Psyllid ID: psy4754
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 304 | 2.2.26 [Sep-21-2011] | |||||||
| Q6PNB6 | 353 | Guanine nucleotide-bindin | yes | N/A | 0.723 | 0.623 | 0.407 | 3e-41 | |
| P62882 | 353 | Guanine nucleotide-bindin | yes | N/A | 0.723 | 0.623 | 0.411 | 3e-41 | |
| Q5RDY7 | 353 | Guanine nucleotide-bindin | yes | N/A | 0.723 | 0.623 | 0.407 | 3e-41 | |
| Q80ZD0 | 353 | Guanine nucleotide-bindin | N/A | N/A | 0.723 | 0.623 | 0.407 | 3e-41 | |
| P62881 | 395 | Guanine nucleotide-bindin | no | N/A | 0.723 | 0.556 | 0.411 | 4e-41 | |
| O14775 | 395 | Guanine nucleotide-bindin | no | N/A | 0.723 | 0.556 | 0.407 | 4e-41 | |
| Q20636 | 356 | Guanine nucleotide-bindin | yes | N/A | 0.654 | 0.558 | 0.428 | 7e-37 | |
| P54313 | 340 | Guanine nucleotide-bindin | no | N/A | 0.657 | 0.588 | 0.410 | 2e-34 | |
| P62880 | 340 | Guanine nucleotide-bindin | no | N/A | 0.657 | 0.588 | 0.410 | 2e-34 | |
| P62879 | 340 | Guanine nucleotide-bindin | no | N/A | 0.657 | 0.588 | 0.410 | 2e-34 |
| >sp|Q6PNB6|GBB5_RABIT Guanine nucleotide-binding protein subunit beta-5 OS=Oryctolagus cuniculus GN=GNB5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 137/270 (50%), Gaps = 50/270 (18%)
Query: 4 NHCRLFDLRADK-EVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59
N C ++ L DK E KK S+ ++ F+ S + D T +WD
Sbjct: 127 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 186
Query: 60 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
+ GH V CL ++P
Sbjct: 187 LLQSFHGHGADVLCLDLAP----------------------------------------- 205
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
S +G +G D VWD V HE+ ++ ++ P G AF+SGS D T
Sbjct: 206 ---SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT 262
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239
CRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+
Sbjct: 263 --CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGARVSI 320
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 321 LFGHENRVSTLRVSPDGTAFCSGSWDHTLR 350
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Oryctolagus cuniculus (taxid: 9986) |
| >sp|P62882|GBB5_RAT Guanine nucleotide-binding protein subunit beta-5 OS=Rattus norvegicus GN=Gnb5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 137/270 (50%), Gaps = 50/270 (18%)
Query: 4 NHCRLFDLRADK-EVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59
N C ++ L DK E KK S+ ++ F+ S + D T +WD
Sbjct: 127 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 186
Query: 60 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
+ GH V CL ++P
Sbjct: 187 LLQSFHGHGADVLCLDLAP----------------------------------------- 205
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
S +G +G D VWD V HE+ V+ ++ P G AF+SGS D T
Sbjct: 206 ---SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 262
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239
CRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+
Sbjct: 263 --CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 320
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 321 LFGHENRVSTLRVSPDGTAFCSGSWDHTLR 350
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Rattus norvegicus (taxid: 10116) |
| >sp|Q5RDY7|GBB5_PONAB Guanine nucleotide-binding protein subunit beta-5 OS=Pongo abelii GN=GNB5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 137/270 (50%), Gaps = 50/270 (18%)
Query: 4 NHCRLFDLRADK-EVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59
N C ++ L DK E KK S+ ++ F+ S + D T +WD
Sbjct: 127 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 186
Query: 60 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
+ GH V CL ++P
Sbjct: 187 LLQSFHGHGADVLCLDLAP----------------------------------------- 205
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
S +G +G D VWD V HE+ ++ ++ P G AF+SGS D T
Sbjct: 206 ---SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT 262
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239
CRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+
Sbjct: 263 --CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 320
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 321 LFGHENRVSTLRVSPDGTAFCSGSWDHTLR 350
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Pongo abelii (taxid: 9601) |
| >sp|Q80ZD0|GBB5_TAMST Guanine nucleotide-binding protein subunit beta-5 OS=Tamias striatus GN=GNB5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 137/270 (50%), Gaps = 50/270 (18%)
Query: 4 NHCRLFDLRADK-EVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59
N C ++ L DK E KK S+ ++ F+ S + D T +WD
Sbjct: 127 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 186
Query: 60 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
+ GH V CL ++P
Sbjct: 187 LLQSFHGHGADVLCLDLAP----------------------------------------- 205
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
S +G +G D VWD V HE+ ++ ++ P G AF+SGS D T
Sbjct: 206 ---SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT 262
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239
CRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+
Sbjct: 263 --CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 320
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 321 LFGHENRVSTLRVSPDGTAFCSGSWDHTLR 350
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Tamias striatus (taxid: 45474) |
| >sp|P62881|GBB5_MOUSE Guanine nucleotide-binding protein subunit beta-5 OS=Mus musculus GN=Gnb5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 137/270 (50%), Gaps = 50/270 (18%)
Query: 4 NHCRLFDLRADK-EVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59
N C ++ L DK E KK S+ ++ F+ S + D T +WD
Sbjct: 169 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 228
Query: 60 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
+ GH V CL ++P
Sbjct: 229 LLQSFHGHGADVLCLDLAP----------------------------------------- 247
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
S +G +G D VWD V HE+ V+ ++ P G AF+SGS D T
Sbjct: 248 ---SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 304
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239
CRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+
Sbjct: 305 --CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 362
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 363 LFGHENRVSTLRVSPDGTAFCSGSWDHTLR 392
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Mus musculus (taxid: 10090) |
| >sp|O14775|GBB5_HUMAN Guanine nucleotide-binding protein subunit beta-5 OS=Homo sapiens GN=GNB5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 137/270 (50%), Gaps = 50/270 (18%)
Query: 4 NHCRLFDLRADK-EVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59
N C ++ L DK E KK S+ ++ F+ S + D T +WD
Sbjct: 169 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 228
Query: 60 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
+ GH V CL ++P
Sbjct: 229 LLQSFHGHGADVLCLDLAP----------------------------------------- 247
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
S +G +G D VWD V HE+ ++ ++ P G AF+SGS D T
Sbjct: 248 ---SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT 304
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239
CRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+
Sbjct: 305 --CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 362
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 363 LFGHENRVSTLRVSPDGTAFCSGSWDHTLR 392
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Homo sapiens (taxid: 9606) |
| >sp|Q20636|GBB2_CAEEL Guanine nucleotide-binding protein subunit beta-2 OS=Caenorhabditis elegans GN=gpb-2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 119/203 (58%), Gaps = 4/203 (1%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H + +SC +GS D+T C ++D+ + + + + + A V +G
Sbjct: 155 HTSYMSCCTFLRSDNLILTGSGDST--CAIWDVESGQLIQNFHGHTGDVFAIDVPKCDTG 212
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+ D VWD V GHE ++ ++ P+G AF++GS D T CRLFD
Sbjct: 213 NTFISAGADKHSLVWDIRSGQCVQSFEGHEADINTVRFHPNGDAFATGSDDAT--CRLFD 270
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD++V Y+K+SILF VDFS+SGR+LFAGY DY + VWDSLKC R + L GHENR
Sbjct: 271 LRADRQVCVYEKESILFPVNGVDFSLSGRILFAGYGDYRVGVWDSLKCARHSVLYGHENR 330
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
+SCL+ SPDGTA S SWD T+R
Sbjct: 331 ISCLRTSPDGTAVCSASWDCTIR 353
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Caenorhabditis elegans (taxid: 6239) |
| >sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + S S+
Sbjct: 138 ELPGHTGYLSCCRFLDDNQIITS-SGDTT--CALWDIETGQQTVGFAGHS--GDVMSLSL 192
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ GR +G D +I +WD +GHE+ ++ + P+G AF++GS D T C
Sbjct: 193 APDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDAT--C 250
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ N+WD++K R L G
Sbjct: 251 RLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAG 310
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLK 337
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Rattus norvegicus (taxid: 10116) |
| >sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Mus musculus GN=Gnb2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + S S+
Sbjct: 138 ELPGHTGYLSCCRFLDDNQIITS-SGDTT--CALWDIETGQQTVGFAGHS--GDVMSLSL 192
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ GR +G D +I +WD +GHE+ ++ + P+G AF++GS D T C
Sbjct: 193 APDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDAT--C 250
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ N+WD++K R L G
Sbjct: 251 RLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAG 310
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLK 337
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Mus musculus (taxid: 10090) |
| >sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Homo sapiens GN=GNB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + S S+
Sbjct: 138 ELPGHTGYLSCCRFLDDNQIITS-SGDTT--CALWDIETGQQTVGFAGHS--GDVMSLSL 192
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ GR +G D +I +WD +GHE+ ++ + P+G AF++GS D T C
Sbjct: 193 APDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDAT--C 250
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ N+WD++K R L G
Sbjct: 251 RLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAG 310
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLK 337
|
Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 304 | ||||||
| 91087273 | 353 | PREDICTED: similar to guanine nucleotide | 0.763 | 0.657 | 0.454 | 6e-45 | |
| 242015145 | 354 | Guanine nucleotide-binding protein subun | 0.763 | 0.655 | 0.45 | 8e-45 | |
| 156549788 | 349 | PREDICTED: guanine nucleotide-binding pr | 0.763 | 0.664 | 0.454 | 3e-44 | |
| 383860345 | 349 | PREDICTED: guanine nucleotide-binding pr | 0.763 | 0.664 | 0.433 | 1e-43 | |
| 321478362 | 349 | guanine nucleotide binding protein, beta | 0.819 | 0.713 | 0.415 | 2e-43 | |
| 307180980 | 350 | Guanine nucleotide-binding protein subun | 0.759 | 0.66 | 0.439 | 5e-43 | |
| 380027739 | 349 | PREDICTED: guanine nucleotide-binding pr | 0.763 | 0.664 | 0.425 | 6e-43 | |
| 66544556 | 349 | PREDICTED: guanine nucleotide-binding pr | 0.763 | 0.664 | 0.425 | 6e-43 | |
| 332023249 | 349 | Guanine nucleotide-binding protein subun | 0.654 | 0.570 | 0.477 | 1e-42 | |
| 322785966 | 349 | hypothetical protein SINV_03419 [Solenop | 0.654 | 0.570 | 0.477 | 1e-42 |
| >gi|91087273|ref|XP_975542.1| PREDICTED: similar to guanine nucleotide-binding protein beta 5 (g protein beta5) [Tribolium castaneum] gi|270009547|gb|EFA05995.1| hypothetical protein TcasGA2_TC008821 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 143/240 (59%), Gaps = 8/240 (3%)
Query: 34 FSVSGRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ SG L+ G D + V+ D + + H + +SC +GS D
Sbjct: 115 YAPSGNLVACGGLDNKVTVYPLSLDEDVTLKKKTVGTHTSYMSCCIFPNSDQQILTGSGD 174
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+T C L+D+ + + + + S + + S +G +G D + +WD V
Sbjct: 175 ST--CALWDVESGQLLQSFHGHSADVMSIDLAPSETGNTFVSGSCDKMVLIWDMRSGQCV 232
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GHE+ V+ ++ P G A ++GS D T CRLFDLRADKEVA Y K+SI+FG SVD
Sbjct: 233 QSFEGHESDVNSVKFHPSGDAVATGSDDAT--CRLFDLRADKEVAVYSKESIIFGVNSVD 290
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
FSVSGRLLFAGYNDYT+NVWD+LKC RV L GHENRVSCLQVSPDGTA S+GSWD TLR
Sbjct: 291 FSVSGRLLFAGYNDYTVNVWDTLKCVRVCLLYGHENRVSCLQVSPDGTALSTGSWDYTLR 350
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242015145|ref|XP_002428234.1| Guanine nucleotide-binding protein subunit beta, putative [Pediculus humanus corporis] gi|212512795|gb|EEB15496.1| Guanine nucleotide-binding protein subunit beta, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 146/240 (60%), Gaps = 8/240 (3%)
Query: 34 FSVSGRLLFAGYNDYTINVWD-SLK---CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ SG L+ G D + V+ SL+ + + H + SC +GS D
Sbjct: 116 YAPSGNLVACGGLDNKVTVYPLSLEEDVTVKKKTVGTHMSYTSCCTFPNSDQQILTGSGD 175
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+T C L+D+ + + + + + + + S +G +G D + +WD V
Sbjct: 176 ST--CALWDVESGQLLQSFHGHNGDVMSLDLAPSETGNTFASGSCDKMVLIWDMRTGQSV 233
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GH++ ++ ++ P G A ++GS D T CRLFDLRADKEVA Y K+SI+FGA SVD
Sbjct: 234 QSFEGHQSDINSVKYHPSGDAVATGSDDAT--CRLFDLRADKEVAIYTKESIIFGANSVD 291
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
FSVSGRLLFAGYNDYTIN+WDSLKC R++ L GHENRVSCLQVSPDGTA S+GSWD TLR
Sbjct: 292 FSVSGRLLFAGYNDYTINIWDSLKCVRISLLYGHENRVSCLQVSPDGTALSTGSWDFTLR 351
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156549788|ref|XP_001606387.1| PREDICTED: guanine nucleotide-binding protein subunit beta-5-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 146/240 (60%), Gaps = 8/240 (3%)
Query: 34 FSVSGRLLFAGYNDYTINVWD-SLK---CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ SG+L+ G D + V+ SL+ + + H + SC +GS D
Sbjct: 111 YAPSGQLVACGGLDNKVTVYPLSLEDDVSAKKKTVGTHTSYTSCCAFPNSDQQVLTGSGD 170
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+T C L+D+ + + + + S + + S +G +G D + +WD V
Sbjct: 171 ST--CALWDVESGQLLQNFHGHSDSVMSIDLAPSETGNTFVSGSCDKLVFIWDMRSGQCV 228
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GHE+ V+ ++ P G A ++GS D T CRLFDLRADKEVA Y K+SI+FGA +VD
Sbjct: 229 QSFEGHESDVNSVRFHPSGDAVATGSDDAT--CRLFDLRADKEVAVYTKESIIFGANAVD 286
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
SVSGRLLFAGYNDYT+NVWD+LKC RV L GHENRVSCL+VSPDGTA S+GSWDTTLR
Sbjct: 287 LSVSGRLLFAGYNDYTVNVWDTLKCQRVALLYGHENRVSCLRVSPDGTALSTGSWDTTLR 346
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383860345|ref|XP_003705651.1| PREDICTED: guanine nucleotide-binding protein subunit beta-5-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 145/240 (60%), Gaps = 8/240 (3%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ SG L+ G D + V+ + R + H + +SC +GS D
Sbjct: 111 YAPSGTLVACGGLDNKVTVYPLSQEDDVSTRKKTVATHTSYMSCCVFPNSDQQILTGSGD 170
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+T C L+D+ + + + + S + + S +G +G D + +WD V
Sbjct: 171 ST--CALWDVESGQLLQSFLGHSSDVMSIDLAPSETGNTFVSGSCDKMVLIWDMRTGQCV 228
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GH++ V+ ++ P G A ++GS D T CRLFDLRAD+E+A Y K+SI+FGA +VD
Sbjct: 229 QSFEGHQSDVNSVKFHPGGDAVATGSDDAT--CRLFDLRADREIAVYGKESIIFGANAVD 286
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
FSVSGRLLFAGYNDYT+N+WD+LKC RV L GHENRVSCL+VSPDGTA S+GSWD+TLR
Sbjct: 287 FSVSGRLLFAGYNDYTVNIWDTLKCQRVAFLYGHENRVSCLRVSPDGTALSTGSWDSTLR 346
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321478362|gb|EFX89319.1| guanine nucleotide binding protein, beta subunit [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 14 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNH---LMGHEN 69
+KE AC + + + F+ SG L+ G D + V+ S++ +N + H +
Sbjct: 94 NKEHACTMPTTWVM---TCAFAPSGNLVACGGLDNKVTVYPLSMEDDPINKRKTVGTHTS 150
Query: 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL 129
+SC +GS D+T C L+D+ + + + + S + + S +G
Sbjct: 151 YMSCCLFPNSDQQILTGSGDST--CALWDVESGQLLQSFHGHSADVMSIDLAPSETGNTF 208
Query: 130 FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 189
+G D T +WD +V GH+ ++ ++ P G A ++GS D T CRLFDLRA
Sbjct: 209 VSGGCDRTALIWDMRTGQKVQAFEGHDADINSVKFYPSGEAIATGSDDAT--CRLFDLRA 266
Query: 190 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 249
D+EVA Y K+SI+FG +VDFSVSGR+LFAGYNDYT+NVWD+LKC R+ L GHENRVSC
Sbjct: 267 DREVAVYTKESIIFGVNAVDFSVSGRILFAGYNDYTVNVWDTLKCSRITMLYGHENRVSC 326
Query: 250 LQVSPDGTAFSSGSWDTTLR 269
L+VSPDGTA +GSWD TLR
Sbjct: 327 LKVSPDGTAICTGSWDFTLR 346
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307180980|gb|EFN68760.1| Guanine nucleotide-binding protein subunit beta-5 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 147/241 (60%), Gaps = 10/241 (4%)
Query: 34 FSVSGRLLFAGYND-----YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 88
+ SG L+ G D YT+++ D + + + H + +SC +GS
Sbjct: 112 YGPSGTLVACGGLDNKVTVYTLSLEDDVSAHK-KTVGTHTSYMSCCAFPNSDQQILTGSG 170
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 148
D+T C L+D+ + + + ++ S + + S +G +G D + +WD
Sbjct: 171 DST--CGLWDVESGQLLQSFQGHSSDVMSIDLAPSETGNTFVSGGCDKLVLIWDMRSGQC 228
Query: 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSV 208
V GH++ V+ ++ P G A ++GS D T CRLFDLRAD+EVA Y K+SI+FGA +V
Sbjct: 229 VQSFEGHQSDVNSVRFHPGGDAVATGSDDAT--CRLFDLRADREVAVYAKESIIFGANAV 286
Query: 209 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268
D SVSGRLLFAGYNDYT+NVWD+LKC RV L GHENRVSCL+VSPDGTA S+GSWD+TL
Sbjct: 287 DLSVSGRLLFAGYNDYTVNVWDTLKCQRVALLYGHENRVSCLRVSPDGTALSTGSWDSTL 346
Query: 269 R 269
R
Sbjct: 347 R 347
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380027739|ref|XP_003697576.1| PREDICTED: guanine nucleotide-binding protein subunit beta-5-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 144/240 (60%), Gaps = 8/240 (3%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ SG L+ G D + V+ + R + H + +SC +GS D
Sbjct: 111 YAPSGALVACGGLDNKVTVYPLSQEDDVSTRKKTVATHTSYMSCCVFPNSDQQILTGSGD 170
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+T C L+D+ + + + + S + + S +G +G D + +WD V
Sbjct: 171 ST--CALWDVESGQLLQSFLGHSSDVMSIDLAPSETGNTFVSGSCDKMVLIWDMRTGQCV 228
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GH++ V+ ++ P G A ++GS D T CRLFDLRAD+E+A Y K+SI+FGA +VD
Sbjct: 229 QSFEGHQSDVNSVKFHPGGDAVATGSDDAT--CRLFDLRADREIAVYAKESIIFGANAVD 286
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
S+SGRLLFAGYNDYT+N+WD+LKC RV L GHENRVSCL+VSPDGTA S+GSWD+TLR
Sbjct: 287 LSISGRLLFAGYNDYTVNIWDTLKCQRVAFLYGHENRVSCLRVSPDGTALSTGSWDSTLR 346
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66544556|ref|XP_392638.2| PREDICTED: guanine nucleotide-binding protein subunit beta-5 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 144/240 (60%), Gaps = 8/240 (3%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ SG L+ G D + V+ + R + H + +SC +GS D
Sbjct: 111 YAPSGALVACGGLDNKVTVYPLSQEDDVSTRKKTVATHTSYMSCCVFPNSDQQILTGSGD 170
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+T C L+D+ + + + + S + + S +G +G D + +WD V
Sbjct: 171 ST--CALWDVESGQLLQSFLGHSSDVMSIDLAPSETGNTFVSGSCDKMVLIWDMRTGQCV 228
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GH++ V+ ++ P G A ++GS D T CRLFDLRAD+E+A Y K+SI+FGA +VD
Sbjct: 229 QSFEGHQSDVNSVKFHPGGDAVATGSDDAT--CRLFDLRADREIAVYAKESIIFGANAVD 286
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
S+SGRLLFAGYNDYT+N+WD+LKC RV L GHENRVSCL+VSPDGTA S+GSWD+TLR
Sbjct: 287 LSISGRLLFAGYNDYTVNIWDTLKCQRVAFLYGHENRVSCLRVSPDGTALSTGSWDSTLR 346
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023249|gb|EGI63504.1| Guanine nucleotide-binding protein subunit beta-5 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 130/203 (64%), Gaps = 4/203 (1%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H + +SC +GS D+T C L+D+ + + + ++ S + + S +G
Sbjct: 148 HTSYMSCCAFPNSDQQILTGSGDST--CGLWDVESGQLLQSFQGHSSDVMSIDLAPSETG 205
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D + +WD V GH++ V+ ++ P G A ++GS D T CRLFD
Sbjct: 206 NTFVSGGCDKLVLIWDMRSGQCVQSFEGHQSDVNSVRFHPGGDAVATGSDDAT--CRLFD 263
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA +VD S+SGRLLFAGYNDYT+NVWD+LKC RV L GHENR
Sbjct: 264 LRADREVAVYAKESIIFGANAVDLSISGRLLFAGYNDYTVNVWDTLKCQRVALLYGHENR 323
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VSCL+VSPDGTA S+GSWD TLR
Sbjct: 324 VSCLRVSPDGTALSTGSWDATLR 346
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322785966|gb|EFZ12582.1| hypothetical protein SINV_03419 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 130/203 (64%), Gaps = 4/203 (1%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H + +SC +GS D+T C L+D+ + + + ++ S + + S +G
Sbjct: 148 HTSYMSCCAFPNSDQQILTGSGDST--CGLWDVESGQLLQSFQGHSSDVMSIDLAPSETG 205
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D + +WD V GH++ V+ ++ P G A ++GS D T CRLFD
Sbjct: 206 NTFVSGGCDKLVLIWDMRSGQCVQSFEGHQSDVNSVRFHPGGDAVATGSDDAT--CRLFD 263
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA +VD S+SGRLLFAGYNDYT+NVWD+LKC RV L GHENR
Sbjct: 264 LRADREVAVYTKESIIFGANAVDLSISGRLLFAGYNDYTVNVWDTLKCQRVALLYGHENR 323
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VSCL+VSPDGTA S+GSWD TLR
Sbjct: 324 VSCLRVSPDGTALSTGSWDATLR 346
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 304 | ||||||
| MGI|MGI:101848 | 395 | Gnb5 "guanine nucleotide bindi | 0.654 | 0.503 | 0.487 | 2.2e-41 | |
| RGD|620759 | 353 | Gnb5 "guanine nucleotide bindi | 0.654 | 0.563 | 0.487 | 2.2e-41 | |
| UNIPROTKB|Q6PNB6 | 353 | GNB5 "Guanine nucleotide-bindi | 0.654 | 0.563 | 0.482 | 2.2e-41 | |
| UNIPROTKB|F1RZC0 | 396 | GNB5 "Uncharacterized protein" | 0.654 | 0.502 | 0.485 | 2.2e-41 | |
| UNIPROTKB|I3LLQ2 | 354 | GNB5 "Uncharacterized protein" | 0.654 | 0.562 | 0.485 | 2.2e-41 | |
| UNIPROTKB|A5PJS1 | 353 | GNB5 "GNB5 protein" [Bos tauru | 0.654 | 0.563 | 0.482 | 2.8e-41 | |
| UNIPROTKB|O14775 | 395 | GNB5 "Guanine nucleotide-bindi | 0.654 | 0.503 | 0.482 | 2.8e-41 | |
| UNIPROTKB|E1BVN4 | 395 | GNB5 "Uncharacterized protein" | 0.654 | 0.503 | 0.472 | 5.9e-41 | |
| ZFIN|ZDB-GENE-070112-342 | 355 | gnb5a "guanine nucleotide bind | 0.651 | 0.557 | 0.485 | 5.9e-41 | |
| FB|FBgn0030011 | 358 | Gbeta5 "Gbeta5" [Drosophila me | 0.763 | 0.648 | 0.404 | 1.6e-40 |
| MGI|MGI:101848 Gnb5 "guanine nucleotide binding protein (G protein), beta 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 99/203 (48%), Positives = 124/203 (61%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N +S + + S D T C L+D+ + + + + + S +G
Sbjct: 194 HTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSETG 251
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D VWD V HE+ V+ ++ P G AF+SGS D T CRL+D
Sbjct: 252 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT--CRLYD 309
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHENR
Sbjct: 310 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 369
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VS L+VSPDGTAF SGSWD TLR
Sbjct: 370 VSTLRVSPDGTAFCSGSWDHTLR 392
|
|
| RGD|620759 Gnb5 "guanine nucleotide binding protein (G protein), beta 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 99/203 (48%), Positives = 124/203 (61%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N +S + + S D T C L+D+ + + + + + S +G
Sbjct: 152 HTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSETG 209
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D VWD V HE+ V+ ++ P G AF+SGS D T CRL+D
Sbjct: 210 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT--CRLYD 267
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHENR
Sbjct: 268 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 327
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VS L+VSPDGTAF SGSWD TLR
Sbjct: 328 VSTLRVSPDGTAFCSGSWDHTLR 350
|
|
| UNIPROTKB|Q6PNB6 GNB5 "Guanine nucleotide-binding protein subunit beta-5" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 98/203 (48%), Positives = 124/203 (61%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N +S + + S D T C L+D+ + + + + + S +G
Sbjct: 152 HTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSETG 209
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D VWD V HE+ ++ ++ P G AF+SGS D T CRL+D
Sbjct: 210 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT--CRLYD 267
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHENR
Sbjct: 268 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGARVSILFGHENR 327
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VS L+VSPDGTAF SGSWD TLR
Sbjct: 328 VSTLRVSPDGTAFCSGSWDHTLR 350
|
|
| UNIPROTKB|F1RZC0 GNB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 99/204 (48%), Positives = 126/204 (61%)
Query: 67 HENRVS-CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
H N +S C + D + S D T C L+D+ + + + + + S +
Sbjct: 194 HTNYLSACSFTNSDMQQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSET 251
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G +G D VWD + HE+ ++ ++ P G AF+SGS D T CRL+
Sbjct: 252 GNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDAT--CRLY 309
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHEN
Sbjct: 310 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 369
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLR 269
RVS L+VSPDGTAF SGSWD TLR
Sbjct: 370 RVSTLRVSPDGTAFCSGSWDHTLR 393
|
|
| UNIPROTKB|I3LLQ2 GNB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 99/204 (48%), Positives = 126/204 (61%)
Query: 67 HENRVS-CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
H N +S C + D + S D T C L+D+ + + + + + S +
Sbjct: 152 HTNYLSACSFTNSDMQQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSET 209
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G +G D VWD + HE+ ++ ++ P G AF+SGS D T CRL+
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDAT--CRLY 267
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHEN
Sbjct: 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLR 269
RVS L+VSPDGTAF SGSWD TLR
Sbjct: 328 RVSTLRVSPDGTAFCSGSWDHTLR 351
|
|
| UNIPROTKB|A5PJS1 GNB5 "GNB5 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 98/203 (48%), Positives = 124/203 (61%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N +S + + S D T C L+D+ + + + + + S +G
Sbjct: 152 HTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSETG 209
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D VWD V HE+ ++ ++ P G AF+SGS D T CRL+D
Sbjct: 210 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT--CRLYD 267
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHENR
Sbjct: 268 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 327
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VS L+VSPDGTAF SGSWD TLR
Sbjct: 328 VSTLRVSPDGTAFCSGSWDHTLR 350
|
|
| UNIPROTKB|O14775 GNB5 "Guanine nucleotide-binding protein subunit beta-5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 98/203 (48%), Positives = 124/203 (61%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N +S + + S D T C L+D+ + + + + + S +G
Sbjct: 194 HTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSETG 251
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D VWD V HE+ ++ ++ P G AF+SGS D T CRL+D
Sbjct: 252 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT--CRLYD 309
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHENR
Sbjct: 310 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 369
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VS L+VSPDGTAF SGSWD TLR
Sbjct: 370 VSTLRVSPDGTAFCSGSWDHTLR 392
|
|
| UNIPROTKB|E1BVN4 GNB5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 96/203 (47%), Positives = 124/203 (61%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N +S + + S D T C L+D+ + + + + + S +G
Sbjct: 194 HTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSETG 251
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186
+G D VWD + H++ ++ ++ P G AF+SGS D T CRL+D
Sbjct: 252 NTFVSGGCDKKAMVWDMRSGQCIQSFETHDSDINSVRYYPSGDAFASGSDDAT--CRLYD 309
Query: 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246
LRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+ L GHENR
Sbjct: 310 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 369
Query: 247 VSCLQVSPDGTAFSSGSWDTTLR 269
VS L+VSPDGTAF SGSWD TLR
Sbjct: 370 VSTLRVSPDGTAFCSGSWDHTLR 392
|
|
| ZFIN|ZDB-GENE-070112-342 gnb5a "guanine nucleotide binding protein (G protein), beta 5a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 99/204 (48%), Positives = 127/204 (62%)
Query: 67 HENRVS-CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
H N +S C + D +S S D T C L+D+ + + + + + + S +
Sbjct: 154 HTNYLSACCFTNSDMQILTS-SGDGT--CALWDVESGQMLQSFHGHAADVLCLDLAPSET 210
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G +G D VWD V H++ ++ ++ P G AF+SGS D T CRL+
Sbjct: 211 GNTFVSGGCDKKACVWDMRTGQCVQSFESHDSDINSVRYYPSGDAFASGSDDAT--CRLY 268
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLF GYNDYTINVWD LK RV+ L GHEN
Sbjct: 269 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFGGYNDYTINVWDVLKGARVSILFGHEN 328
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLR 269
RVS L+VSPDGTAF SGSWD TLR
Sbjct: 329 RVSTLRVSPDGTAFCSGSWDHTLR 352
|
|
| FB|FBgn0030011 Gbeta5 "Gbeta5" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 97/240 (40%), Positives = 141/240 (58%)
Query: 34 FSVSGRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ SG + G D + V+ D + + H + +SC +GS D
Sbjct: 120 YAPSGNFVACGGLDNKVTVYPITSDEEMAAKKRTVGTHTSYMSCCIYPNSDQQILTGSGD 179
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+T C L+D+ + + + + S A + + +G +G D +WD V
Sbjct: 180 ST--CALWDVESGQLLQSFHGHSGDVMAIDLAPNETGNTFVSGSCDRMAFIWDMRSGHVV 237
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GH++ V+ ++ P G A ++GS D++ CRL+D+RAD+EVA + K+SI+FG SVD
Sbjct: 238 QSFEGHQSDVNSVKFHPCGDAIATGSDDSS--CRLYDMRADREVAVFAKESIIFGVNSVD 295
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
FSVSGRLLFAGYNDYT+N+WD+LK RV L GHEN+VSC+QVSPDGTA S+GSWD T+R
Sbjct: 296 FSVSGRLLFAGYNDYTVNLWDTLKSERVCLLYGHENKVSCVQVSPDGTALSTGSWDYTIR 355
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6PNB6 | GBB5_RABIT | No assigned EC number | 0.4074 | 0.7236 | 0.6232 | yes | N/A |
| Q5RDY7 | GBB5_PONAB | No assigned EC number | 0.4074 | 0.7236 | 0.6232 | yes | N/A |
| P62882 | GBB5_RAT | No assigned EC number | 0.4111 | 0.7236 | 0.6232 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 304 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-50 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-37 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-15 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 3e-50
Identities = 88/244 (36%), Positives = 114/244 (46%), Gaps = 16/244 (6%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
V S G L +G +D TI +WD V L GH + VS + SPDG SS S D
Sbjct: 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 90 TTLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLK 145
T +++D+ K + + D + SV FS G + + D TI +WD + K
Sbjct: 115 KT--IKVWDVETGKCLTTLRGHTDWV----NSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168
Query: 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 205
C L GH V+ + SPDG S S D T +L+DL K + + G
Sbjct: 169 CVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGT--IKLWDLSTGKCLGTLRGHEN--GV 222
Query: 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
SV FS G LL +G D TI VWD V L GH N V+ L SPDG +SGS D
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282
Query: 266 TTLR 269
T+R
Sbjct: 283 GTIR 286
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-37
Identities = 96/248 (38%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
T V FS G+LL G D TI VWD + L GH V + S DGT +SGS D
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72
Query: 90 TTLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLK 145
T RL+DL + V + +SV FS GR+L + D TI VWD + K
Sbjct: 73 KT--IRLWDLETGECVRTLTGHTSYV----SSVAFSPDGRILSSSSRDKTIKVWDVETGK 126
Query: 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILF 203
C L GH + V+ + SPDGT +S S D T+ +L+DLR K VA +
Sbjct: 127 CLTT--LRGHTDWVNSVAFSPDGTFVASSSQDGTI--KLWDLRTGKCVATLTGHTGEV-- 180
Query: 204 GATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261
SV FS G L + +D TI +WD + KC L GHEN V+ + SPDG +S
Sbjct: 181 --NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLAS 236
Query: 262 GSWDTTLR 269
GS D T+R
Sbjct: 237 GSEDGTIR 244
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-35
Identities = 68/215 (31%), Positives = 99/215 (46%), Gaps = 20/215 (9%)
Query: 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGAT 118
L GH V+C+ SPDG ++GS D T+ +++DL + + K +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTI--KVWDLETGELLRTLKGHTGPV----R 55
Query: 119 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 178
V S G L +G +D TI +WD V L GH + VS + SPDG SS S D
Sbjct: 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK 115
Query: 179 TLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKC 234
T +++D+ K + + D + SV FS G + + D TI +WD + KC
Sbjct: 116 T--IKVWDVETGKCLTTLRGHTDWV----NSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169
Query: 235 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GH V+ + SPDG S S D T++
Sbjct: 170 VAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-32
Identities = 63/180 (35%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 6 CRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRV 61
+++D+ K + + D + SV FS G + + D TI +WD + KC
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWV----NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172
Query: 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 121
L GH V+ + SPDG S S D T +L+DL K + + G SV
Sbjct: 173 --LTGHTGEVNSVAFSPDGEKLLSSSSDGT--IKLWDLSTGKCLGTLRGHEN--GVNSVA 226
Query: 122 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
FS G LL +G D TI VWD V L GH N V+ L SPDG +SGS D T+R
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 7e-31
Identities = 84/233 (36%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 6 CRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRV 61
RL+DL + V + +SV FS GR+L + D TI VWD + KC
Sbjct: 75 IRLWDLETGECVRTLTGHTSYV----SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130
Query: 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGATS 119
L GH + V+ + SPDGT +S S D T++ L+DLR K VA + S
Sbjct: 131 --LRGHTDWVNSVAFSPDGTFVASSSQDGTIK--LWDLRTGKCVATLTGHTGEV----NS 182
Query: 120 VDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177
V FS G L + +D TI +WD + KC L GHEN V+ + SPDG +SGS D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSED 240
Query: 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
T R++DLR + V + TS+ +S G+ L +G D TI +WD
Sbjct: 241 GT--IRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 8e-24
Identities = 100/273 (36%), Positives = 138/273 (50%), Gaps = 18/273 (6%)
Query: 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWD-SLKCCR 60
+L+DLR K ++ + +S+ FS G LL A +D TI +WD S
Sbjct: 177 DGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234
Query: 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATS 119
+ L GH + V SPDG+ +SGS D T RL+DLR+ + S S
Sbjct: 235 RSTLSGHSDSVVSS-FSPDGSLLASGSSDGT--IRLWDLRSSSSLLRTLSGHS--SSVLS 289
Query: 120 VDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSW 176
V FS G+LL +G +D T+ +WD + K L GHE VS L SPDG S GS
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236
D T+R L+DLR K + + S SV FS GR++ +G D T+ +WD
Sbjct: 350 DGTIR--LWDLRTGKPLKTLEGHS---NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ +L GH +RV+ L SPDG + +SGS D T+R
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.2 bits (204), Expect = 8e-18
Identities = 83/246 (33%), Positives = 118/246 (47%), Gaps = 11/246 (4%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQV-SPDGTAFSSG 86
TS+ FS G LL +G +D TI +WD + + H++ VS L + SPDG +
Sbjct: 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 87 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLK 145
S +L+DL ++ + TS+ FS G+LL +G D TI +WD
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESV-TSLAFSPDGKLLASGSSLDGTIKLWDLRT 187
Query: 146 CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 204
++ L GH + VS L SPDG +SGS D T+ RL+DL K +
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI--RLWDLSTGKLLRSTLSGHS--D 243
Query: 205 ATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263
+ FS G LL +G +D TI +WD + L GH + V + SPDG +SGS
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 264 WDTTLR 269
D T+R
Sbjct: 304 SDGTVR 309
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.8 bits (203), Expect = 1e-17
Identities = 73/211 (34%), Positives = 99/211 (46%), Gaps = 9/211 (4%)
Query: 33 DFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91
FS G LL +G +D TI +WD + L GH + V + SPDG +SGS D T
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVN 150
+R L+DL K ++ +S+ FS G L+ G +D TI +WD +
Sbjct: 308 VR--LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 210
L GH N V + SPDG SSGS D T RL+DL + D TS+DF
Sbjct: 366 TLEGHSN-VLSVSFSPDGRVVSSGSTDGT--VRLWDLSTGSLL--RNLDGHTSRVTSLDF 420
Query: 211 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241
S G+ L +G +D TI +WD +
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.6 bits (192), Expect = 2e-16
Identities = 77/213 (36%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Query: 4 NHCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCR 60
RL+DLR+ + S SV FS G+LL +G +D T+ +WD + K
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320
Query: 61 VNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
L GHE VS L SPDG S GS D T+R L+DLR K + + S S
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR--LWDLRTGKPLKTLEGHS---NVLS 375
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
V FS GR++ +G D T+ +WD + +L GH +RV+ L SPDG + +SGS D T
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSV 212
+ RL+DL+ + + D + + S D SV
Sbjct: 436 I--RLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 2e-15
Identities = 74/241 (30%), Positives = 107/241 (44%), Gaps = 14/241 (5%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
S SG LL A +D +++ D L GHE+ ++ + SPDG SGS D T++
Sbjct: 35 SSESGILLLALLSDSLVSLPDL----SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIK 90
Query: 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWD-SLKCCRVNH 151
D + ++ +L A D T+ +WD S +
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 152 LMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 210
L GH V+ L SPDG S S D T+ +L+DLR K ++ + +S+ F
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTI--KLWDLRTGKPLSTLAGHTD--PVSSLAF 206
Query: 211 SVSGRLLFAGY-NDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268
S G LL A +D TI +WD S + L GH + V SPDG+ +SGS D T+
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265
Query: 269 R 269
R
Sbjct: 266 R 266
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-15
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
+L+DL K + + G SV FS G LL +G D TI VWD V
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
L GH N V+ L SPDG +SGS D T+R
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 6e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 58 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
+ L GH V+ + SPDG +SGS D T+R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 6e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
+ L GH V+ + SPDG +SGS D T+R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 6e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 234 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ L GH V+ + SPDG +SGS D T+R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
+ L GH V+ + SPDG +SGS D T++
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ L GH V+ + SPDG +SGS D T++
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ L GH V+ + SPDG +SGS D T++
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIK 37
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 304 | |||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0643|consensus | 327 | 100.0 | ||
| KOG0288|consensus | 459 | 100.0 | ||
| KOG0313|consensus | 423 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0640|consensus | 430 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0289|consensus | 506 | 100.0 | ||
| KOG0313|consensus | 423 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG1446|consensus | 311 | 99.98 | ||
| KOG0274|consensus | 537 | 99.98 | ||
| KOG0275|consensus | 508 | 99.98 | ||
| KOG0292|consensus | 1202 | 99.98 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0296|consensus | 399 | 99.97 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0283|consensus | 712 | 99.97 | ||
| KOG0647|consensus | 347 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| KOG1407|consensus | 313 | 99.97 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0641|consensus | 350 | 99.97 | ||
| KOG1407|consensus | 313 | 99.97 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| KOG0268|consensus | 433 | 99.97 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| KOG0274|consensus | 537 | 99.96 | ||
| KOG1036|consensus | 323 | 99.96 | ||
| KOG1446|consensus | 311 | 99.96 | ||
| KOG0299|consensus | 479 | 99.96 | ||
| KOG0301|consensus | 745 | 99.96 | ||
| KOG0973|consensus | 942 | 99.95 | ||
| KOG0277|consensus | 311 | 99.95 | ||
| KOG1539|consensus | 910 | 99.95 | ||
| KOG2096|consensus | 420 | 99.95 | ||
| KOG0300|consensus | 481 | 99.95 | ||
| KOG0308|consensus | 735 | 99.95 | ||
| KOG0278|consensus | 334 | 99.95 | ||
| KOG0772|consensus | 641 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG2096|consensus | 420 | 99.95 | ||
| KOG0641|consensus | 350 | 99.95 | ||
| KOG0299|consensus | 479 | 99.95 | ||
| KOG2106|consensus | 626 | 99.95 | ||
| KOG0973|consensus | 942 | 99.95 | ||
| KOG0647|consensus | 347 | 99.95 | ||
| KOG0288|consensus | 459 | 99.95 | ||
| KOG0268|consensus | 433 | 99.94 | ||
| KOG1408|consensus | 1080 | 99.94 | ||
| KOG1274|consensus | 933 | 99.94 | ||
| KOG0772|consensus | 641 | 99.94 | ||
| KOG0308|consensus | 735 | 99.94 | ||
| KOG0289|consensus | 506 | 99.94 | ||
| KOG0264|consensus | 422 | 99.94 | ||
| KOG0269|consensus | 839 | 99.94 | ||
| KOG0267|consensus | 825 | 99.94 | ||
| KOG0282|consensus | 503 | 99.94 | ||
| KOG0267|consensus | 825 | 99.94 | ||
| KOG1036|consensus | 323 | 99.93 | ||
| KOG0646|consensus | 476 | 99.93 | ||
| KOG4283|consensus | 397 | 99.93 | ||
| KOG0294|consensus | 362 | 99.93 | ||
| KOG1332|consensus | 299 | 99.93 | ||
| KOG0639|consensus | 705 | 99.93 | ||
| KOG0283|consensus | 712 | 99.93 | ||
| KOG0300|consensus | 481 | 99.93 | ||
| KOG0293|consensus | 519 | 99.93 | ||
| KOG2445|consensus | 361 | 99.92 | ||
| KOG0646|consensus | 476 | 99.92 | ||
| KOG0640|consensus | 430 | 99.92 | ||
| KOG0301|consensus | 745 | 99.92 | ||
| KOG0643|consensus | 327 | 99.92 | ||
| KOG0639|consensus | 705 | 99.92 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG0275|consensus | 508 | 99.91 | ||
| KOG0305|consensus | 484 | 99.91 | ||
| KOG1273|consensus | 405 | 99.91 | ||
| KOG2055|consensus | 514 | 99.91 | ||
| KOG0321|consensus | 720 | 99.91 | ||
| KOG1539|consensus | 910 | 99.91 | ||
| KOG1332|consensus | 299 | 99.91 | ||
| KOG1063|consensus | 764 | 99.91 | ||
| KOG2048|consensus | 691 | 99.9 | ||
| KOG4378|consensus | 673 | 99.9 | ||
| KOG0642|consensus | 577 | 99.9 | ||
| KOG2106|consensus | 626 | 99.9 | ||
| KOG1274|consensus | 933 | 99.89 | ||
| KOG0264|consensus | 422 | 99.89 | ||
| KOG1063|consensus | 764 | 99.89 | ||
| KOG1408|consensus | 1080 | 99.89 | ||
| KOG4328|consensus | 498 | 99.89 | ||
| KOG0302|consensus | 440 | 99.88 | ||
| KOG1034|consensus | 385 | 99.88 | ||
| KOG2055|consensus | 514 | 99.88 | ||
| KOG1538|consensus | 1081 | 99.87 | ||
| KOG0269|consensus | 839 | 99.87 | ||
| KOG4283|consensus | 397 | 99.87 | ||
| KOG2048|consensus | 691 | 99.86 | ||
| KOG0270|consensus | 463 | 99.86 | ||
| KOG1009|consensus | 434 | 99.86 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG0307|consensus | 1049 | 99.86 | ||
| KOG4378|consensus | 673 | 99.85 | ||
| KOG0322|consensus | 323 | 99.85 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG2919|consensus | 406 | 99.83 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG0650|consensus | 733 | 99.83 | ||
| KOG0270|consensus | 463 | 99.83 | ||
| KOG2919|consensus | 406 | 99.82 | ||
| KOG4328|consensus | 498 | 99.82 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| KOG0771|consensus | 398 | 99.82 | ||
| KOG0649|consensus | 325 | 99.81 | ||
| KOG0650|consensus | 733 | 99.81 | ||
| KOG0302|consensus | 440 | 99.81 | ||
| KOG1517|consensus | 1387 | 99.81 | ||
| KOG0321|consensus | 720 | 99.81 | ||
| KOG2445|consensus | 361 | 99.8 | ||
| KOG1273|consensus | 405 | 99.79 | ||
| KOG1188|consensus | 376 | 99.79 | ||
| KOG1538|consensus | 1081 | 99.79 | ||
| KOG0307|consensus | 1049 | 99.78 | ||
| KOG2110|consensus | 391 | 99.78 | ||
| KOG1963|consensus | 792 | 99.78 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG0303|consensus | 472 | 99.77 | ||
| KOG1445|consensus | 1012 | 99.77 | ||
| KOG1007|consensus | 370 | 99.76 | ||
| KOG4227|consensus | 609 | 99.76 | ||
| KOG1587|consensus | 555 | 99.75 | ||
| KOG1009|consensus | 434 | 99.75 | ||
| KOG0303|consensus | 472 | 99.75 | ||
| KOG0644|consensus | 1113 | 99.74 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG1034|consensus | 385 | 99.73 | ||
| KOG2110|consensus | 391 | 99.73 | ||
| KOG1007|consensus | 370 | 99.73 | ||
| KOG0771|consensus | 398 | 99.72 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG0642|consensus | 577 | 99.7 | ||
| KOG1523|consensus | 361 | 99.7 | ||
| KOG1523|consensus | 361 | 99.69 | ||
| KOG2394|consensus | 636 | 99.68 | ||
| KOG2111|consensus | 346 | 99.68 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG2139|consensus | 445 | 99.66 | ||
| KOG1524|consensus | 737 | 99.66 | ||
| KOG0644|consensus | 1113 | 99.65 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.64 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1524|consensus | 737 | 99.63 | ||
| KOG1445|consensus | 1012 | 99.63 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.63 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1963|consensus | 792 | 99.63 | ||
| KOG1587|consensus | 555 | 99.62 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG1517|consensus | 1387 | 99.61 | ||
| KOG0290|consensus | 364 | 99.61 | ||
| KOG1240|consensus | 1431 | 99.6 | ||
| KOG0322|consensus | 323 | 99.59 | ||
| KOG0290|consensus | 364 | 99.59 | ||
| KOG1240|consensus | 1431 | 99.59 | ||
| KOG1272|consensus | 545 | 99.59 | ||
| KOG1310|consensus | 758 | 99.59 | ||
| KOG2111|consensus | 346 | 99.57 | ||
| KOG1188|consensus | 376 | 99.56 | ||
| KOG4497|consensus | 447 | 99.56 | ||
| KOG1310|consensus | 758 | 99.56 | ||
| KOG1334|consensus | 559 | 99.55 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.55 | |
| KOG1272|consensus | 545 | 99.55 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.54 | |
| KOG4497|consensus | 447 | 99.53 | ||
| KOG0649|consensus | 325 | 99.53 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.53 | |
| KOG0974|consensus | 967 | 99.52 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG3881|consensus | 412 | 99.5 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.5 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.49 | |
| KOG2139|consensus | 445 | 99.48 | ||
| KOG3881|consensus | 412 | 99.48 | ||
| KOG1354|consensus | 433 | 99.46 | ||
| KOG2321|consensus | 703 | 99.45 | ||
| KOG1334|consensus | 559 | 99.45 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.45 | |
| KOG2394|consensus | 636 | 99.44 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG4547|consensus | 541 | 99.4 | ||
| KOG4547|consensus | 541 | 99.39 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG4227|consensus | 609 | 99.36 | ||
| KOG1409|consensus | 404 | 99.34 | ||
| KOG2315|consensus | 566 | 99.32 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.29 | |
| KOG2321|consensus | 703 | 99.28 | ||
| KOG2314|consensus | 698 | 99.28 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.27 | |
| KOG0974|consensus | 967 | 99.27 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.21 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.2 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.19 | |
| KOG0280|consensus | 339 | 99.19 | ||
| KOG1064|consensus | 2439 | 99.18 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.15 | |
| KOG4190|consensus | 1034 | 99.14 | ||
| KOG1409|consensus | 404 | 99.14 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.12 | |
| KOG1064|consensus | 2439 | 99.11 | ||
| KOG1354|consensus | 433 | 99.11 | ||
| KOG2314|consensus | 698 | 99.1 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.06 | |
| KOG1832|consensus | 1516 | 99.05 | ||
| KOG0280|consensus | 339 | 99.02 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.0 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.96 | |
| KOG4190|consensus | 1034 | 98.95 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.95 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.93 | |
| KOG4532|consensus | 344 | 98.92 | ||
| KOG0309|consensus | 1081 | 98.92 | ||
| KOG4532|consensus | 344 | 98.9 | ||
| KOG2315|consensus | 566 | 98.88 | ||
| KOG3914|consensus | 390 | 98.88 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.88 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.87 | |
| KOG3914|consensus | 390 | 98.86 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.85 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.85 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.83 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.8 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.79 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.78 | |
| KOG2041|consensus | 1189 | 98.75 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.74 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.7 | |
| KOG0882|consensus | 558 | 98.66 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.65 | |
| KOG0309|consensus | 1081 | 98.65 | ||
| KOG4714|consensus | 319 | 98.63 | ||
| KOG2066|consensus | 846 | 98.61 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.61 | |
| KOG0882|consensus | 558 | 98.59 | ||
| KOG1275|consensus | 1118 | 98.58 | ||
| KOG2114|consensus | 933 | 98.54 | ||
| KOG1275|consensus | 1118 | 98.53 | ||
| KOG2695|consensus | 425 | 98.53 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.51 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.46 | |
| KOG1920|consensus | 1265 | 98.45 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.44 | |
| KOG4714|consensus | 319 | 98.43 | ||
| KOG2041|consensus | 1189 | 98.41 | ||
| KOG2695|consensus | 425 | 98.35 | ||
| KOG1912|consensus | 1062 | 98.31 | ||
| KOG1912|consensus | 1062 | 98.28 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.27 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.16 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.15 | |
| KOG1645|consensus | 463 | 98.05 | ||
| KOG2114|consensus | 933 | 98.04 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.03 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.97 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.95 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.94 | |
| KOG3617|consensus | 1416 | 97.93 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.93 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.91 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.87 | |
| KOG2066|consensus | 846 | 97.82 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.79 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.76 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.75 | |
| KOG1832|consensus | 1516 | 97.73 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.67 | |
| KOG1008|consensus | 783 | 97.6 | ||
| KOG3621|consensus | 726 | 97.57 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.57 | |
| KOG1645|consensus | 463 | 97.54 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.51 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.51 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.47 | |
| KOG1920|consensus | 1265 | 97.4 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.33 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.3 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.3 | |
| KOG2444|consensus | 238 | 97.3 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.24 | |
| KOG3617|consensus | 1416 | 97.23 | ||
| KOG3621|consensus | 726 | 97.21 | ||
| KOG4649|consensus | 354 | 97.2 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.17 | |
| KOG4640|consensus | 665 | 97.13 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.12 | |
| KOG4640|consensus | 665 | 97.08 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.07 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.04 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.03 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.01 | |
| KOG4441|consensus | 571 | 96.97 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.92 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.84 | |
| KOG2079|consensus | 1206 | 96.71 | ||
| KOG1008|consensus | 783 | 96.66 | ||
| KOG4499|consensus | 310 | 96.65 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.62 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.61 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.55 | |
| KOG2444|consensus | 238 | 96.46 | ||
| KOG2395|consensus | 644 | 96.45 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.43 | |
| KOG2079|consensus | 1206 | 96.36 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 96.35 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.34 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.21 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.05 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.03 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.02 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.0 | |
| PRK10115 | 686 | protease 2; Provisional | 95.97 | |
| KOG2395|consensus | 644 | 95.93 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.92 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.79 | |
| KOG4441|consensus | 571 | 95.78 | ||
| KOG4649|consensus | 354 | 95.7 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.48 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.38 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.32 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.25 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.19 | |
| KOG4499|consensus | 310 | 94.81 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.76 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.47 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.38 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.24 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 93.76 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.7 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.47 | |
| KOG4659|consensus | 1899 | 93.46 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.07 | |
| KOG1916|consensus | 1283 | 92.56 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.95 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.91 | |
| PRK10115 | 686 | protease 2; Provisional | 91.86 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 91.73 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.58 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.42 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.77 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 90.42 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.36 | |
| KOG1916|consensus | 1283 | 90.32 | ||
| KOG3630|consensus | 1405 | 90.08 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 89.82 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 89.67 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 89.58 | |
| KOG4460|consensus | 741 | 89.18 | ||
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.93 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 88.77 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.5 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.37 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.34 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.33 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 88.12 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 88.05 | |
| KOG3630|consensus | 1405 | 87.93 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.86 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.51 | |
| KOG1897|consensus | 1096 | 87.21 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 86.88 | |
| KOG2280|consensus | 829 | 86.64 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 86.36 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 86.18 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 85.76 | |
| KOG2247|consensus | 615 | 85.54 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 85.41 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 85.39 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 85.11 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.9 | |
| KOG2247|consensus | 615 | 84.48 | ||
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 84.3 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 84.07 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 83.87 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.83 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.82 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 83.68 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.63 | |
| KOG4460|consensus | 741 | 83.43 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 83.42 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 82.86 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 82.55 | |
| KOG1983|consensus | 993 | 80.72 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 80.45 | |
| KOG2280|consensus | 829 | 80.45 |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=321.26 Aligned_cols=260 Identities=25% Similarity=0.381 Sum_probs=236.3
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCC--CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
++.+++|+..+.+.+.++. .|...+.++.|+|. +.-+|||+.||++++|+...-.++..+.+|...|..++|+|+|
T Consensus 196 sG~~kvW~~~~~~~~~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 196 SGLVKVWSVPQCNLLQTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred CCceeEeecCCcceeEEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 5779999999987665544 44455999999997 5689999999999999999888999999999999999999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
++|.|++.|.+. ++||+.++.++..-+.+ ..++.+++|++||..+++|+-|..-+|||++++.++..+.+|..+|.
T Consensus 274 ~~L~TasfD~tW--RlWD~~tk~ElL~QEGH--s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~ 349 (459)
T KOG0272|consen 274 KFLGTASFDSTW--RLWDLETKSELLLQEGH--SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL 349 (459)
T ss_pred ceeeecccccch--hhcccccchhhHhhccc--ccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee
Confidence 999999999995 79999998877544444 34678999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
+|+|+|+|.++||||.|+++ ++||++.-+.+..+.++. .-|+.+.|+| .|.+|++++.|++++||...++.++++
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~--kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTC--KVWDLRMRSELYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred eEeECCCceEEeecCCCCcE--EEeeecccccceeccccc--chhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence 99999999999999999995 699999888888887776 3578999998 789999999999999999999999999
Q ss_pred eeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 240 ~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+.||++.|.+++++||+..++|+|.|++||+|.
T Consensus 426 LaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 426 LAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999996
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=309.67 Aligned_cols=272 Identities=26% Similarity=0.369 Sum_probs=231.6
Q ss_pred CCCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-eeecCCcCcEEEEEECC-
Q psy4754 1 MGKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSP- 78 (304)
Q Consensus 1 ~~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~- 78 (304)
.||.|+|+||+.+-.++.... .|.+=|.|++|+|||+.||+|+.||+|++||+.+|+++ +.+.+|..+|++|+|.|
T Consensus 134 sGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred CCCceEEeeccCCCCcceeec--CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence 389999999999986654433 33334999999999999999999999999999988654 67899999999999986
Q ss_pred ----CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC
Q psy4754 79 ----DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 154 (304)
Q Consensus 79 ----d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 154 (304)
.+++|+|+|.|+++ ++||+..++.+.++..+. .+++++.+.-++ ++++|+.|++|++|+...+...+++.+
T Consensus 212 hl~p~~r~las~skDg~v--rIWd~~~~~~~~~lsgHT--~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSV--RIWDTKLGTCVRTLSGHT--ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG 286 (480)
T ss_pred ccCCCccceecccCCCCE--EEEEccCceEEEEeccCc--cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc
Confidence 46799999999995 799999999988877754 468899887654 899999999999999988888899999
Q ss_pred cccceeEEEEc-----------CCC-------------------------cEEEEeecCCceEEEEeeecCCc-eEEEee
Q psy4754 155 HENRVSCLQVS-----------PDG-------------------------TAFSSGSWDTTLRCRLFDLRADK-EVACYK 197 (304)
Q Consensus 155 h~~~v~~v~~s-----------p~~-------------------------~~las~s~d~~i~i~~~d~~~~~-~~~~~~ 197 (304)
|...|+.++++ |.+ +.+++||.|.++ .+|+....+ ++....
T Consensus 287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl--flW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL--FLWNPFKSKKPITRMT 364 (480)
T ss_pred cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE--EEecccccccchhhhh
Confidence 99999999877 222 359999999996 589865433 343333
Q ss_pred cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 198 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
++. .-|+.+.||||++++|+++-|+.|++|+..+|+.+.++.||.+.|+.++||.|.+.|+|||.|.++++|+.+...
T Consensus 365 gHq--~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 365 GHQ--ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred chh--hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 333 457999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhheee
Q psy4754 278 MQYLLR 283 (304)
Q Consensus 278 ~~~~~~ 283 (304)
+.+-+-
T Consensus 443 l~~DLp 448 (480)
T KOG0271|consen 443 LKQDLP 448 (480)
T ss_pred ecccCC
Confidence 555444
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=291.34 Aligned_cols=261 Identities=39% Similarity=0.617 Sum_probs=238.3
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeeeeecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC------CRVNHLMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~------~~~~~~~~h~~~V~~l~~ 76 (304)
|+++-|||.-+.+.+..++.+. -=|-.++|+|.|+++|+|+.|...-||++.+. ...+.+.+|.+.+.|+.|
T Consensus 76 DGklIvWDs~TtnK~haipl~s--~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f 153 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF 153 (343)
T ss_pred CCeEEEEEcccccceeEEecCc--eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEE
Confidence 7889999999987776666442 12889999999999999999999999999743 345668899999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
-+ ..+|+|+|.|.+ |.+||+.+++.+..+..|. ..+.+++++| +++.+++|+-|+..++||++.+.+.++|.+|
T Consensus 154 ~d-D~~ilT~SGD~T--CalWDie~g~~~~~f~GH~--gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 154 LD-DNHILTGSGDMT--CALWDIETGQQTQVFHGHT--GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred cC-CCceEecCCCce--EEEEEcccceEEEEecCCc--ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence 87 458899999999 6899999999998887654 3467889999 9999999999999999999999999999999
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
...|++|.|.|+|.-|++||.|++ +|+||+|..+.+..|.......++++++||-.|++|++|..|.++.+||...++
T Consensus 229 esDINsv~ffP~G~afatGSDD~t--cRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDAT--CRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccccceEEEccCCCeeeecCCCce--eEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 999999999999999999999999 589999999999999988888999999999999999999999999999999999
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 236 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 236 ~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
.+..+.||+++|+||..+|||..++|||+|.++|+|.
T Consensus 307 ~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999994
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=298.97 Aligned_cols=263 Identities=23% Similarity=0.329 Sum_probs=233.5
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
+..+.|+.+++.|||||.+|.+++|+..++..+.+|++|...|.++.|+|. +..++||+.|+++ ++|++.+..++.
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv--klw~~~~e~~l~ 255 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV--KLWKLSQETPLQ 255 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCce--eeeccCCCcchh
Confidence 889999999999999999999999999999999999999999999999996 5699999999996 789999888887
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
.++.+. .-+..++|+|+|++|++++.|.+-++||+.+...+....||...|.+++|.|||..++|||.|..- ++||
T Consensus 256 ~l~gH~--~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~--RvWD 331 (459)
T KOG0272|consen 256 DLEGHL--ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG--RVWD 331 (459)
T ss_pred hhhcch--hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh--heee
Confidence 776654 346789999999999999999999999999998888889999999999999999999999999985 7999
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc-CCCEEEEeecC
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWD 265 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D 265 (304)
+++++++..+.++. ..|.+++|+|+|..||+|+.|++++|||+....++.++.+|..-|+.|.|+| .|.+|+|+|.|
T Consensus 332 lRtgr~im~L~gH~--k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHI--KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cccCcEEEEecccc--cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 99999988887654 5789999999999999999999999999999889999999999999999999 78999999999
Q ss_pred CeeeeccccccchhheeeccccCC-ceeEEEEEecCCcc
Q psy4754 266 TTLRDEESKNRYMQYLLRSRITKP-TQGLTVYFQDRGRS 303 (304)
Q Consensus 266 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 303 (304)
+++++|....-.+... .-.+ .+=+-|.+++++|-
T Consensus 410 ~t~kiWs~~~~~~~ks----LaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKS----LAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cceeeecCCCcccchh----hcCCccceEEEEeccCCce
Confidence 9999997655332221 2222 22477888888764
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=287.89 Aligned_cols=260 Identities=27% Similarity=0.423 Sum_probs=222.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcC-----CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSV-----SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-----~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 77 (304)
|++|++||+.++++... ....|...|++++|.| ..++||+++.||.|+|||+.-+.++..+.+|..+|+|+.|-
T Consensus 178 dg~I~lwdpktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred CCeEEEecCCCCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 68899999999976421 1223334499999987 45799999999999999999999999999999999999997
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeE-----------EcCCC--------------------
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD-----------FSVSG-------------------- 126 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~-------------------- 126 (304)
-+ .+++|||.|++| ++|+...+...+.++.+.+ .++.++ |.|.+
T Consensus 257 G~-gliySgS~DrtI--kvw~a~dG~~~r~lkGHah--wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 257 GE-GLIYSGSQDRTI--KVWRALDGKLCRELKGHAH--WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred CC-ceEEecCCCceE--EEEEccchhHHHhhcccch--heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 54 389999999996 6899988777776665543 223332 22333
Q ss_pred -----CEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc
Q psy4754 127 -----RLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS 200 (304)
Q Consensus 127 -----~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~ 200 (304)
+.+++|+.|+++.+|+-... +++..+.+|..-|+.+.||||++++|++|-|++| ++|+.++++.+..++++-
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV--kLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV--KLWDGRTGKFLASFRGHV 409 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccce--eeeeCCCcchhhhhhhcc
Confidence 35999999999999996544 4677889999999999999999999999999996 699999999998887664
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
..|..++|+.|.++|++|+.|.++++|++.+.+....+.||...|.++.|+|||..+++|+.|+.+|+|.
T Consensus 410 --~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 --AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 5789999999999999999999999999999888888999999999999999999999999999999995
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=261.70 Aligned_cols=263 Identities=24% Similarity=0.322 Sum_probs=221.7
Q ss_pred CceeEEeeccccce---EeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 3 KNHCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 3 ~~~v~~wd~~~~~~---~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
|+++-+|++..+.. .+.-....|.|.|+.++.++||++.++++.|+++++||+.+++..+.|.+|..-|.+++|++|
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d 116 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD 116 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC
Confidence 77899999887632 223334456777999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccccceeccCccc
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
.+.++|||.|+++ .+||........ ...+....-++++.|+|+ +..+++++.|++|++||+++.+....+.+|++
T Consensus 117 n~qivSGSrDkTi--klwnt~g~ck~t-~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~ 193 (315)
T KOG0279|consen 117 NRQIVSGSRDKTI--KLWNTLGVCKYT-IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG 193 (315)
T ss_pred CceeecCCCccee--eeeeecccEEEE-EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc
Confidence 9999999999996 689988654443 333322335789999998 67899999999999999999888888999999
Q ss_pred ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 158 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
+++.+++||||...++|+.|+.+ .+||++.++.+..+.+.. .+.+++|+|+.-.|+.+. +..|+|||+.++..+
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~--~LwdL~~~k~lysl~a~~---~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEA--MLWDLNEGKNLYSLEAFD---IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV 267 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceE--EEEEccCCceeEeccCCC---eEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence 99999999999999999999985 799999999887776654 578999999987776665 557999999887766
Q ss_pred EEee----cc-----ccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 238 NHLM----GH-----ENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 238 ~~~~----~h-----~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.+++ +. .-.-.+++||+||..|.+|=.|+.||+|+..
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 5543 22 2345778999999999999999999999764
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=255.94 Aligned_cols=269 Identities=20% Similarity=0.232 Sum_probs=223.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d 79 (304)
+|.|||+|...+|.+-..++.. ...|+.+...|++++||+|+.- .||+||+.++. ++.++.+|...|.++.|..|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~--dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHP--DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD 94 (311)
T ss_pred CcceeeeeehhcCeEEEEEecC--ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeec
Confidence 6899999999999998887744 2349999999999999988765 79999998775 57889999999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-cCcccc
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENR 158 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~ 158 (304)
|+.++|||.|+++ ++||++.....+.++... .++++..+|+...|++|..+|.|++||+....+-.++ .....+
T Consensus 95 grWMyTgseDgt~--kIWdlR~~~~qR~~~~~s---pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 95 GRWMYTGSEDGTV--KIWDLRSLSCQRNYQHNS---PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred CeEEEecCCCceE--EEEeccCcccchhccCCC---CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 9999999999995 789999866666666543 5789999999999999999999999999876544332 344467
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCc------eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
|.++...|||..++.+..-|. +.+|++-... ++..++.+. ..+..+.+|||+++||+++.|.+++||+.+
T Consensus 170 i~sl~v~~dgsml~a~nnkG~--cyvW~l~~~~~~s~l~P~~k~~ah~--~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGN--CYVWRLLNHQTASELEPVHKFQAHN--GHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred eeeEEEcCCCcEEEEecCCcc--EEEEEccCCCccccceEhhheeccc--ceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 999999999999998887777 5789876543 233444443 346788999999999999999999999987
Q ss_pred Cc-eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc--hhhee
Q psy4754 233 KC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY--MQYLL 282 (304)
Q Consensus 233 ~~-~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~--~~~~~ 282 (304)
+- +....+.+|..+++..+||.||++|+|||.|.+.|+|++..+. ++|..
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 76 3445688999999999999999999999999999999887655 44443
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=296.21 Aligned_cols=245 Identities=27% Similarity=0.413 Sum_probs=225.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-------------------------------ceeeeeecCCcCcEEEEE
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLK-------------------------------CCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-------------------------------~~~~~~~~~h~~~V~~l~ 75 (304)
.+++|+.|++|+++||.|-.|..|++|.+.. ....+.+.||.++|..++
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 3589999999999999999999999999741 112455789999999999
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
|+|+.++|+|+|.|.++ |+|.+.+...+..++.+ .+++..+.|+|-|-+||+++.|++.++|......+++.+.+|
T Consensus 459 FsPd~rfLlScSED~sv--RLWsl~t~s~~V~y~GH--~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSV--RLWSLDTWSCLVIYKGH--LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred ecccccceeeccCCcce--eeeecccceeEEEecCC--CcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence 99999999999999995 89999999999988854 457888999999999999999999999998888889999999
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
...|.|+.|+|+..++|+||.|+++ |+||..++..+..+.+|. .++.+++|||+|.+|++|+.|+.|++||+..+.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tV--RlWDv~~G~~VRiF~GH~--~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTV--RLWDVSTGNSVRIFTGHK--GPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred ccccceEEECCcccccccCCCCceE--EEEEcCCCcEEEEecCCC--CceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 9999999999999999999999995 799999999999998765 578999999999999999999999999999999
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 236 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 236 ~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
.+..+.+|.+.|.+|.||.||..||+|+.|++|++||..+.+..
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999999999999999998876655
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=250.89 Aligned_cols=272 Identities=25% Similarity=0.369 Sum_probs=225.0
Q ss_pred cccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCC-----CceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEE
Q psy4754 23 DSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSL-----KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~-----~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~ 96 (304)
+.|..-|++++..+.+ ..+++++.|.++.+|++. .|...+.+.||+..|..+..++||++.+|+|+|+++ ++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l--rl 89 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL--RL 89 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE--EE
Confidence 3444449999998874 588999999999999975 466788999999999999999999999999999995 89
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc-CcccceeEEEEcCC--CcEEEE
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPD--GTAFSS 173 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~sp~--~~~las 173 (304)
||+.+++..+.+..+.. .+.+++|++|+..+++|+.|.+|++|+....+...... ++.+.|+|+.|+|+ .-++++
T Consensus 90 WDl~~g~~t~~f~GH~~--dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTK--DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEecCCcEEEEEEecCC--ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 99999888777766543 57899999999999999999999999987655443222 23789999999998 578999
Q ss_pred eecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEc
Q psy4754 174 GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 253 (304)
Q Consensus 174 ~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s 253 (304)
+|+|+++ ++||+++.+....+.++. ..++.+++||||.++++|+.||.+.+||+..++.+..+ +|...|.+++|+
T Consensus 168 ~s~Dktv--KvWnl~~~~l~~~~~gh~--~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 168 ASWDKTV--KVWNLRNCQLRTTFIGHS--GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred ccCCceE--EEEccCCcchhhcccccc--ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence 9999996 689999988877777665 35799999999999999999999999999998887655 689999999999
Q ss_pred cCCCEEEEeecCCeeeeccccccchhheeeccccC------CceeEEEEEecCCccC
Q psy4754 254 PDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITK------PTQGLTVYFQDRGRSI 304 (304)
Q Consensus 254 p~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 304 (304)
|+ ++.+....+..||+|++..+..-..++-.... ++.-+-|++++|||-|
T Consensus 243 pn-rywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 243 PN-RYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred CC-ceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 97 55556667888999999887655544422222 3445889999999854
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=246.28 Aligned_cols=245 Identities=22% Similarity=0.334 Sum_probs=208.2
Q ss_pred CCCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 1 MGKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 1 ~~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
+|-.+||+||+++++..|....+.+...|+++.|..+|++++|||.||++||||+..-.+.+ +..|..+|.++..+|+.
T Consensus 58 a~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR-~~~~~spVn~vvlhpnQ 136 (311)
T KOG0315|consen 58 AGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR-NYQHNSPVNTVVLHPNQ 136 (311)
T ss_pred ccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch-hccCCCCcceEEecCCc
Confidence 36789999999999998888888888889999999999999999999999999998744444 44588999999999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc------ccceeccC
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC------CRVNHLMG 154 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~------~~~~~~~~ 154 (304)
..|++|-.++.| |+||+......+.+.++.. ..+.++.+.|||.+++++.+.|..++|++.+. .++..+..
T Consensus 137 teLis~dqsg~i--rvWDl~~~~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 137 TELISGDQSGNI--RVWDLGENSCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred ceEEeecCCCcE--EEEEccCCccccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 999999888885 8999988766655544432 35789999999999999999999999997643 34566789
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
|+..+..+.+|||++++|++|.|+++ ++|+.++. +....+..+. --+..++||.||+||++|++|+.+++|++..
T Consensus 214 h~~~il~C~lSPd~k~lat~ssdktv--~iwn~~~~~kle~~l~gh~--rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSDKTV--KIWNTDDFFKLELVLTGHQ--RWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCCceE--EEEecCCceeeEEEeecCC--ceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 99999999999999999999999996 58988775 2222333332 3478999999999999999999999999999
Q ss_pred ceeeEEeeccccceEEEEEc
Q psy4754 234 CCRVNHLMGHENRVSCLQVS 253 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~s 253 (304)
+++++.+.+|.....|++..
T Consensus 290 ~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 290 GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeeecCCcccccEEEEee
Confidence 99999999999998888764
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=263.39 Aligned_cols=265 Identities=25% Similarity=0.351 Sum_probs=219.6
Q ss_pred CCceeEEeecccc----ceE----eeee---cc-ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC
Q psy4754 2 GKNHCRLFDLRAD----KEV----ACYK---KD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~----~~~----~~~~---~~-~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~ 69 (304)
++.+-|+|++.-+ ... +.+. .. .....|++++|+.+|.+||+|+.||.++||+.. |..+.++..|++
T Consensus 199 ~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hkg 277 (524)
T KOG0273|consen 199 GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKG 277 (524)
T ss_pred CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCC
Confidence 5677899998751 111 1110 01 112348999999999999999999999999984 677888999999
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
||.+|.|+.+|++|+|++-|+++ .+||..+++....++.+.. +...+.|-. ...|++.+.|+.|+++.+....++
T Consensus 278 PI~slKWnk~G~yilS~~vD~tt--ilwd~~~g~~~q~f~~~s~--~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~ 352 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVDGTT--ILWDAHTGTVKQQFEFHSA--PALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPV 352 (524)
T ss_pred ceEEEEEcCCCCEEEeccCCccE--EEEeccCceEEEeeeeccC--CccceEEec-CceEeecCCCceEEEEEecCCCcc
Confidence 99999999999999999999996 6899988887777766543 223566654 457899999999999998888899
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC---------CEEEEE
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG---------RLLFAG 220 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g---------~~l~sg 220 (304)
.++.+|.++|.+|.|+|.+.+|+|||.|+++ ++|..........+..+. ..+..+.|+|+| -.++++
T Consensus 353 ~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl--kiWs~~~~~~~~~l~~Hs--kei~t~~wsp~g~v~~n~~~~~~l~sa 428 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNPTGSLLASCSDDGTL--KIWSMGQSNSVHDLQAHS--KEIYTIKWSPTGPVTSNPNMNLMLASA 428 (524)
T ss_pred eeeecccCceEEEEECCCCceEEEecCCCee--EeeecCCCcchhhhhhhc--cceeeEeecCCCCccCCCcCCceEEEe
Confidence 9999999999999999999999999999996 589977666666555554 245677788764 468999
Q ss_pred eCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+.|++|++||+..+.+++.++.|..+|++|+|||+|+++|+|+.|+.|-+|..+.+
T Consensus 429 s~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 429 SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred ecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 99999999999999999999999999999999999999999999999999976553
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=258.26 Aligned_cols=248 Identities=27% Similarity=0.326 Sum_probs=213.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC-Cee
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKE 104 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~-~~~ 104 (304)
...|+.+-|+|+..++++++.|++|++||..+++..+.++||.+.|..++|...|++|+++|.|-. +.+||+.+ .++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~--~~LWd~~~~~~c 185 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS--AKLWDFDTFFRC 185 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc--hhheeHHHHHHH
Confidence 334888999999999999999999999999999999999999999999999999999999999987 47899875 223
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
+.....+ ...+.++.|-|.|.++++++.|.+|+.||..++.++.++.+|...|..+..+.||.++|+|+.|.++ ++
T Consensus 186 ~ks~~gh--~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl--~v 261 (406)
T KOG0295|consen 186 IKSLIGH--EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL--RV 261 (406)
T ss_pred HHHhcCc--ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE--EE
Confidence 3222222 2356789999999999999999999999999999999999999999999999999999999999996 57
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEE
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVS---------------GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 249 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~---------------g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~ 249 (304)
|-+.+.++...+..+. .++-+++|.|. ++++++++.|++|++||+.++.++-++.||.++|..
T Consensus 262 W~~~t~~~k~~lR~hE--h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 262 WVVATKQCKAELREHE--HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEeccchhhhhhhccc--cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 8777765544454444 24556666442 369999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 250 LQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 250 l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
++|+|.|++|+|++.|+++|+||+++..+...
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 99999999999999999999999987664433
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=253.72 Aligned_cols=262 Identities=24% Similarity=0.340 Sum_probs=236.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeeeecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
-|.+|++||..+++....++ .|..++..++|+..|+++|+++.|=.+++||..+ .++++.+.+|+..|.++.|-|.|
T Consensus 128 ~d~tikv~D~~tg~~e~~Lr--GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g 205 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLR--GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG 205 (406)
T ss_pred CCceEEEEEccchhhhhhhh--ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC
Confidence 37899999999998865544 3445599999999999999999999999999987 57888899999999999999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
.+++|++.|.+| +.|++.++-++..+..+.. -+..+..+.||..+++++.|.++++|=..+.++...+.+|+.+|.
T Consensus 206 d~ilS~srD~ti--k~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 206 DHILSCSRDNTI--KAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred Ceeeecccccce--eEEecccceeEEeccCchH--hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 999999999996 6899999999988887654 457788999999999999999999999988888888999999999
Q ss_pred EEEEcCC---------------CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 161 CLQVSPD---------------GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 161 ~v~~sp~---------------~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
+++|-|. ++.+.++|+|++| ++||+.++.++.++.++. ..|..++|+|.|+||+++.+|++
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI--k~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI--KIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceE--EEEeccCCeEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCc
Confidence 9998772 2589999999996 689999999988887765 57899999999999999999999
Q ss_pred EEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 226 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 226 i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+++||+.++++++.+..|+.-+++++|..+..+++|||-|.++++|+-
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999963
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=241.80 Aligned_cols=243 Identities=22% Similarity=0.316 Sum_probs=211.5
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK- 103 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~- 103 (304)
|...|.++.|++|.+.|+++|+||.+.|||.-+....+.+.....||..++|+|.|++++.|+.|.. |-++++....
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~--Csiy~ls~~d~ 131 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK--CSIYPLSTRDA 131 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce--eEEEecccccc
Confidence 3444999999999999999999999999999998888888888999999999999999999999987 5789987431
Q ss_pred -----eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEeecC
Q psy4754 104 -----EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWD 177 (304)
Q Consensus 104 -----~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d 177 (304)
..+.+..+... ..++.|-. ..++++++.|.++.+||+++++.+..|.+|.+.|.+++++| ++++|++|+.|
T Consensus 132 ~g~~~v~r~l~gHtgy--lScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGY--LSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred cccceeeeeecCccce--eEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 11222222221 35677877 45789999999999999999999999999999999999999 99999999999
Q ss_pred CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc--ccceEEEEEccC
Q psy4754 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH--ENRVSCLQVSPD 255 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~ 255 (304)
++. ++||+|.+...+.|..+. ..++++.|.|+|.-+++|++|+++++||++..+++..+... ..+|++++||..
T Consensus 209 ~~a--klWD~R~~~c~qtF~ghe--sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 209 KSA--KLWDVRSGQCVQTFEGHE--SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred cce--eeeeccCcceeEeecccc--cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 996 699999999999998876 46799999999999999999999999999999888877632 358999999999
Q ss_pred CCEEEEeecCCeeeecccccc
Q psy4754 256 GTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 256 g~~lasgs~D~~i~~~~~~~~ 276 (304)
|++|.+|-.|.++-+||.-++
T Consensus 285 GRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ccEEEeeecCCceeEeecccc
Confidence 999999999999999987543
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=274.57 Aligned_cols=264 Identities=34% Similarity=0.473 Sum_probs=230.0
Q ss_pred CCceeEEeeccccc--eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeC-CCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS-LKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~-~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.++.+++|++.+.+ ++..+ ..+...|+.++|+|+++++++|+.|++++|||+ ..+..++++++|...|++++|+|
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred CCCcEEEeecccccchhhccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 36789999997776 33332 456667999999999999999999999999999 55688899999999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceeccCcc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHE 156 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~ 156 (304)
++++++||+.|++| ++||+++++....++.+.. .++.++|++++.++++++.|+.|++||+.++. +...+.++.
T Consensus 257 ~g~~i~Sgs~D~tv--riWd~~~~~~~~~l~~hs~--~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 332 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTV--RIWDVRTGECVRKLKGHSD--GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE 332 (456)
T ss_pred CCCEEEEecCCCcE--EEEeccCCeEEEeeeccCC--ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC
Confidence 99999999999995 7999999999888887654 67899999999999999999999999999888 456666666
Q ss_pred cc--eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee-eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 157 NR--VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-FGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 157 ~~--v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
.. ++++.|+|++.++++++.|+++ ++||++.++....+..+... ....+..+++.++++++|+.|+.|++||..+
T Consensus 333 ~~~~~~~~~fsp~~~~ll~~~~d~~~--~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 333 NSAPVTSVQFSPNGKYLLSASLDRTL--KLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCceeEEEECCCCcEEEEecCCCeE--EEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 55 9999999999999999999996 69999998887777665432 2234455688999999999999999999999
Q ss_pred ceeeEEeecc-ccceEEEEEccCCCEEEEee--cCCeeeeccc
Q psy4754 234 CCRVNHLMGH-ENRVSCLQVSPDGTAFSSGS--WDTTLRDEES 273 (304)
Q Consensus 234 ~~~~~~~~~h-~~~i~~l~~sp~g~~lasgs--~D~~i~~~~~ 273 (304)
+..+..+.+| ...+..++++|...++++++ .|+.|++|..
T Consensus 411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 9889999999 89999999999999999998 7999999964
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=263.16 Aligned_cols=268 Identities=24% Similarity=0.382 Sum_probs=223.8
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 84 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~ 84 (304)
-+-+|++.+. .+.+....|...+++++++|||+++|||+.||+|||||...+-++.+|..|...|+.+.|+.+|+.++
T Consensus 331 QLlVweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 331 QLLVWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLL 408 (893)
T ss_pred eEEEEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEE
Confidence 3678998875 45555566677799999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-CeEEEecCCccccceeccCcccceeEEE
Q psy4754 85 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-YTINVWDSLKCCRVNHLMGHENRVSCLQ 163 (304)
Q Consensus 85 sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~v~ 163 (304)
|.|.||++ |.||+...+..+++..... ....+++..|.|..+++|+.| ..|.+|++.+++.+..+.||+++|.+++
T Consensus 409 ssSLDGtV--RAwDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 409 SSSLDGTV--RAWDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred EeecCCeE--EeeeecccceeeeecCCCc-eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 99999995 7899998888887764332 234688889999999998876 7899999999999999999999999999
Q ss_pred EcCCCcEEEEeecCCceEEEEeeecCCc-eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec
Q psy4754 164 VSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 164 ~sp~~~~las~s~d~~i~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
|+|++..+|++|+|.+| ++||+-... .+.++. +...+..++|+|+|+.|+++..||.|.+||......+..+.|
T Consensus 486 f~~~~~~LaS~SWDkTV--RiW~if~s~~~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTV--RIWDIFSSSGTVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EccccCeEEeccccceE--EEEEeeccCceeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 99999999999999996 689975432 233332 224678999999999999999999999999776554433322
Q ss_pred --------------------cccceEEEEEccCCCEEEEeecCCeeeeccccccchhhee
Q psy4754 243 --------------------HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLL 282 (304)
Q Consensus 243 --------------------h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~ 282 (304)
.....+.|.||+||..+++|+.-+.|.+++.+++-....+
T Consensus 561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 561 RKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred hhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 1257899999999999999999999999887665443333
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=250.15 Aligned_cols=255 Identities=24% Similarity=0.312 Sum_probs=199.0
Q ss_pred eeccccccc--eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec---CCcCcEEEEEECCCCCeEEEEeCCCceEE
Q psy4754 20 YKKDSILFG--ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDGTAFSSGSWDTTLRC 94 (304)
Q Consensus 20 ~~~~~~~~~--i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~s~d~~~l~sgs~D~~i~~ 94 (304)
|....+.|. |+|+.|+|||.++||++.||++.+||-.+|+.+..+. +|++.|.+|+|+||++.++|+|.|+++
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~-- 259 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTI-- 259 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceE--
Confidence 333444455 9999999999999999999999999999999998887 899999999999999999999999995
Q ss_pred EEeeeCCCeeEeEEecc--------------c---------------------------eeeceeeeEEcCCCCEEEEEe
Q psy4754 95 RLFDLRADKEVACYKKD--------------S---------------------------ILFGATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~--------------~---------------------------~~~~~~~~~~s~~~~~l~sg~ 133 (304)
++||+.+.+.+..+... . +.-+++++..++++.++++|+
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS 339 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec
Confidence 78999765444333210 0 011377889999999999999
Q ss_pred CCCeEEEecCCccccceec-cCcc--------------------------------------------------------
Q psy4754 134 NDYTINVWDSLKCCRVNHL-MGHE-------------------------------------------------------- 156 (304)
Q Consensus 134 ~dg~i~iwd~~~~~~~~~~-~~h~-------------------------------------------------------- 156 (304)
.||.|.-||..++..-+-. .+|.
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 9999999996543211000 0111
Q ss_pred ------------------------cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC
Q psy4754 157 ------------------------NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV 212 (304)
Q Consensus 157 ------------------------~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 212 (304)
....+++++|++..+|.|++|+.+ .+|.+.............+...++.++|||
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkv--hvysl~g~~l~ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKV--HVYSLSGDELKEEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceE--EEEEecCCcccceeeeecccCCceEEEECC
Confidence 122367888999999999999885 578776655332222223335689999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeEE-eeccccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
|+.|||+|...+.+-+||..+.+.... +.-|.++|.||+|+|+..++||||.|..|.+|..+++-.
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 999999999999999999988776433 444999999999999999999999999999998877653
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=231.06 Aligned_cols=258 Identities=24% Similarity=0.301 Sum_probs=202.8
Q ss_pred CCceeEEeecccc-c--eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRAD-K--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~-~--~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~ 76 (304)
+|+.||+|+...+ . +...+ .+.|.-+|.+++|+|.|++||+||.|.++-||.-..+ +++.+++||.++|.|++|
T Consensus 35 ~Dk~vriw~~~~~~s~~ck~vl-d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaw 113 (312)
T KOG0645|consen 35 TDKAVRIWSTSSGDSWTCKTVL-DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAW 113 (312)
T ss_pred CCceEEEEecCCCCcEEEEEec-cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEE
Confidence 5788999999952 2 22111 1345556999999999999999999999999997644 678899999999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE---eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC---ccccce
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACY---KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---KCCRVN 150 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~---~~~~~~ 150 (304)
+++|++|+++|.|+++ |+|.+..+.+..+. +.+ ...+..+.|+|...+|++++.|.+|++|+-. ...+..
T Consensus 114 s~sG~~LATCSRDKSV--WiWe~deddEfec~aVL~~H--tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~ 189 (312)
T KOG0645|consen 114 SASGNYLATCSRDKSV--WIWEIDEDDEFECIAVLQEH--TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ 189 (312)
T ss_pred cCCCCEEEEeeCCCeE--EEEEecCCCcEEEEeeeccc--cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEE
Confidence 9999999999999995 89999866655443 333 2345678999999999999999999999754 346788
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
++.+|+..|.+++|+|.|..+++|+.|++++ +|-.... +... +.-.+..++|. ...|++++.|+.|++|.
T Consensus 190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~--Iw~~~~~-----~~~~-~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVS--IWRLYTD-----LSGM-HSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred EecCccceEEEEEecCCCceEEEecCCcceE--eeeeccC-----cchh-cccceEeeeec--ccceEeccCCCEEEEEE
Confidence 8999999999999999999999999999974 6754321 1110 11134567777 56889999999999996
Q ss_pred CCCc------eee-EEeeccccceEEEEEccC-CCEEEEeecCCeeeecccc
Q psy4754 231 SLKC------CRV-NHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 231 ~~~~------~~~-~~~~~h~~~i~~l~~sp~-g~~lasgs~D~~i~~~~~~ 274 (304)
.... ..+ +.-..|...|+++.|+|. ..+|++||.|++|++|.+.
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4321 111 123458999999999994 7899999999999999763
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=264.16 Aligned_cols=246 Identities=34% Similarity=0.449 Sum_probs=215.0
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee-CCC
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL-RAD 102 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~-~~~ 102 (304)
..+|+++.|+++|+.+++++.|+.+++|+....+ ..+.+.+|...|..++|+|+++++++++.|+++ ++||+ ...
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti--riwd~~~~~ 236 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL--RIWDLKDDG 236 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE--EEeeccCCC
Confidence 3458999999999999999999999999997777 677778999999999999999999999999996 78999 444
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
..+.+++.+.. .+++++|+|+++++++|+.|++|++||++++++...+.+|.+.|++++|+++++.+++++.|+.+
T Consensus 237 ~~~~~l~gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i-- 312 (456)
T KOG0266|consen 237 RNLKTLKGHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI-- 312 (456)
T ss_pred eEEEEecCCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE--
Confidence 77777776543 46899999999999999999999999999999999999999999999999999999999999985
Q ss_pred EEeeecCCc--eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccc---eEEEEEccCCC
Q psy4754 183 RLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR---VSCLQVSPDGT 257 (304)
Q Consensus 183 ~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~---i~~l~~sp~g~ 257 (304)
++||+.+++ +...+........++++.|+|++.+++++..|+++++||+..+..+..+.+|... +.+..+++++.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 699999988 3344433322115799999999999999999999999999999999999998874 45556688999
Q ss_pred EEEEeecCCeeeeccccccc
Q psy4754 258 AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~ 277 (304)
.+.+|+.|+.|.+|++..+.
T Consensus 393 ~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred eEEEEeCCceEEEEeCCccc
Confidence 99999999999999987543
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=253.81 Aligned_cols=259 Identities=22% Similarity=0.337 Sum_probs=218.2
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEECCCCCe
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTA 82 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~ 82 (304)
+.+-+||..+-.- ......|...|+++.|+++|.++++|+.+|.||+|+.+-. .++.+.+| ...|++++|+|+...
T Consensus 118 GEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 118 GEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSK 194 (464)
T ss_pred ccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCce
Confidence 5577888754321 1222345556999999999999999999999999998754 34445554 589999999998889
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
++|+|.|++| ++||....++...+..+. ..+.+++|+|...++++|+.|..|++||.++++++.++.+|+..|..+
T Consensus 195 F~t~SdDg~i--kiWdf~~~kee~vL~GHg--wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~ 270 (464)
T KOG0284|consen 195 FLTCSDDGTI--KIWDFRMPKEERVLRGHG--WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAV 270 (464)
T ss_pred eEEecCCCeE--EEEeccCCchhheeccCC--CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEE
Confidence 9999999996 689998777766665543 357899999999999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCceeeEEe-
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHL- 240 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~~~~~~~~- 240 (304)
.|+|++++|+|+|.|..+ +++|+++.+.+.+++++. ..+++++|+|-. .+|.+|+.||.|..|.+...+++..+
T Consensus 271 ~f~~n~N~Llt~skD~~~--kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 271 KFNPNGNWLLTGSKDQSC--KVFDIRTMKELFTYRGHK--KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred EEcCCCCeeEEccCCceE--EEEehhHhHHHHHhhcch--hhheeeccccccccceeeccCCCceEEEeccccccccCCC
Confidence 999999999999999985 699999888888887665 367999999975 56677999999999998755565554
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.+|...|++++|+|-|.+|++||.|+++|+|..
T Consensus 347 ~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 347 PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccccceeeeeccccceeEeecCCCcceeeecc
Confidence 469999999999999999999999999999954
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=256.81 Aligned_cols=243 Identities=23% Similarity=0.368 Sum_probs=211.2
Q ss_pred cccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCC-ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 23 DSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 23 ~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
..|..+|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|..++|+++|..++|+|.|+.+ ++||+.
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l--KlwDtE 288 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL--KLWDTE 288 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee--eeeccc
Confidence 34556699999999 788999999999999999865 88999999999999999999999999999999996 699999
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+++.+..+..+.. +.++.|+|++ +.|++|+.|+.|+-||+++++.++++..|-+.|..+.|-++++.|++.+.|++
T Consensus 289 TG~~~~~f~~~~~---~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 289 TGQVLSRFHLDKV---PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred cceEEEEEecCCC---ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 9999998877653 4689999998 78999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCceEE--------------------------------Eee--------------cCceeeeeeEEEEcCC
Q psy4754 180 LRCRLFDLRADKEVA--------------------------------CYK--------------KDSILFGATSVDFSVS 213 (304)
Q Consensus 180 i~i~~~d~~~~~~~~--------------------------------~~~--------------~~~~~~~~~~~~~s~~ 213 (304)
+ ++|+.+....+. .+. ++........+.||||
T Consensus 366 ~--riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 366 V--RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred E--EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 6 578765432111 000 0111112457899999
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC-CCEEEEeecCCeeeecc
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-g~~lasgs~D~~i~~~~ 272 (304)
|.+|++|+.||.+.+||-.+...+..++.|.+++..+.|+|. .+.+||++.||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999999999999999994 57899999999999996
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=243.38 Aligned_cols=245 Identities=26% Similarity=0.334 Sum_probs=220.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
|.|+++.|.+.+++||+.|++++|||+.+++...++.||...|+.+++|+..-||++++.|+.|+ -||+...+.++.|
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK--CwDLe~nkvIR~Y 231 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK--CWDLEYNKVIRHY 231 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE--EEechhhhhHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999976 4999988877766
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
..+ +-++.+++.+|.-+.+++|+.|.++++||+++...+..+.||..+|..|.+.|-.-.+++||.|++| ++||++
T Consensus 232 hGH--lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv--rlWDl~ 307 (460)
T KOG0285|consen 232 HGH--LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV--RLWDLR 307 (460)
T ss_pred ccc--cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE--EEeeec
Confidence 543 4467899999999999999999999999999999999999999999999999877789999999996 799999
Q ss_pred CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 189 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
.++.+.++-.+. ..+.+++.+|....+|+++.| .|+-|++..+..+..+.+|++.|++++...|| ++++|+..+.|
T Consensus 308 agkt~~tlt~hk--ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~ 383 (460)
T KOG0285|consen 308 AGKTMITLTHHK--KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSI 383 (460)
T ss_pred cCceeEeeeccc--ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEE
Confidence 999887765554 357899999999999999877 79999999999998899999999999999875 67799999999
Q ss_pred eeccccccchhheee
Q psy4754 269 RDEESKNRYMQYLLR 283 (304)
Q Consensus 269 ~~~~~~~~~~~~~~~ 283 (304)
-+||++.++..+.+.
T Consensus 384 ~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRGQ 398 (460)
T ss_pred EEEecCcCccccccc
Confidence 999999988655554
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=263.96 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=182.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|...|..+.|+|+.++|+++|.|+++|+|++.+...+-..+||..||+.+.|+|.|-+++|+|.|++ .++|......+
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t--ArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT--ARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce--eeeeecccCCc
Confidence 4444999999999999999999999999999999888889999999999999999999999999999 58999988777
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
++.+..+. ..+.++.|+|+..++++|+.|.+|++||..++..++.|.||+++|.+|+|||+|+++++|+.|+.| .+
T Consensus 528 lRifaghl--sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I--~i 603 (707)
T KOG0263|consen 528 LRIFAGHL--SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI--KI 603 (707)
T ss_pred hhhhcccc--cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE--EE
Confidence 77665542 346789999999999999999999999999999999999999999999999999999999999986 69
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
||+.+++.+..+..+. ..+.++.|+.+|..||+|+.|.+|++||+..
T Consensus 604 WDl~~~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCcchhhhhccc--CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999998887777763 4679999999999999999999999999654
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=254.64 Aligned_cols=263 Identities=24% Similarity=0.377 Sum_probs=226.3
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC-CceEEEEeeeCCCeeEe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVA 106 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D-~~i~~~~wd~~~~~~~~ 106 (304)
.++|++|++.-.+||+|-..|...+|.+.....++.+.--..+|..++|+..|.+|+-|+.. +. +.+|+...+.-+
T Consensus 267 kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQ--LlVweWqsEsYV- 343 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQ--LLVWEWQSESYV- 343 (893)
T ss_pred ceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccce--EEEEEeecccee-
Confidence 48999999999999999999999999999999999988778899999999999999988754 34 457777654433
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
++.+.+...+++++++|||+++++|+.||.|++||...+.++.++..|+..|+.+.|+..++.+.+.|-||+| +.||
T Consensus 344 -lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtV--RAwD 420 (893)
T KOG0291|consen 344 -LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTV--RAWD 420 (893)
T ss_pred -eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeE--Eeee
Confidence 3444445567899999999999999999999999999999999999999999999999999999999999996 7999
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
+..++...++..... ....+++..|.|..+.+|+.|. .|++|++.+|+.+..+.||++||.+++|+|+|..|||||+|
T Consensus 421 lkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred ecccceeeeecCCCc-eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 999988888755443 3567899999999999999885 69999999999999999999999999999999999999999
Q ss_pred CeeeeccccccchhheeeccccCC----ceeEEEEEecCCccC
Q psy4754 266 TTLRDEESKNRYMQYLLRSRITKP----TQGLTVYFQDRGRSI 304 (304)
Q Consensus 266 ~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 304 (304)
++||+|+.-.. ++..++ .....|.|+|+|..|
T Consensus 500 kTVRiW~if~s-------~~~vEtl~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 500 KTVRIWDIFSS-------SGTVETLEIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred ceEEEEEeecc-------CceeeeEeeccceeEEEEcCCCCeE
Confidence 99999975222 122233 346889999988753
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=245.69 Aligned_cols=248 Identities=23% Similarity=0.307 Sum_probs=191.3
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 101 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~ 101 (304)
|...|--+.||++|++||||+.|.+..||.+..- +..+++.+|..+|.-+.||||.++|++|+.|.. +++||+.+
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~--~~lwDv~t 300 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV--LSLWDVDT 300 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh--eeeccCCc
Confidence 3444888999999999999999999999997543 347788999999999999999999999999988 48999999
Q ss_pred CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc-cceeEEEEcCCCcEEEEeecCCce
Q psy4754 102 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+...+.++.. ..+++.+++|.||+..+++|+.|+++..||+..+. +....+-. ..|.+++.++||+++++...|..+
T Consensus 301 gd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i 378 (519)
T KOG0293|consen 301 GDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKI 378 (519)
T ss_pred chhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccce
Confidence 8887777654 34567899999999999999999999999975321 22222221 235566666666655555555543
Q ss_pred E---------------------------------------EEEeeecCCceEEEeecCceeeeeeEEEEcC-CCCEEEEE
Q psy4754 181 R---------------------------------------CRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAG 220 (304)
Q Consensus 181 ~---------------------------------------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg 220 (304)
. +.+||++..+.+..+.++.....+..-+|.- +..++++|
T Consensus 379 ~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG 458 (519)
T KOG0293|consen 379 RLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG 458 (519)
T ss_pred eeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEec
Confidence 1 1355555444444444443323333444553 45899999
Q ss_pred eCCCcEEEEeCCCceeeEEeeccccceEEEEEcc-CCCEEEEeecCCeeeecccccc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~~~~ 276 (304)
++|+.|+||+-.++.++..+.||...|+||+|+| +..++||+|.|++||+|.+.+.
T Consensus 459 SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 459 SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999999 5678999999999999987654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=236.31 Aligned_cols=260 Identities=34% Similarity=0.467 Sum_probs=223.9
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
+++|++||..+++...... .+...+..+.|+|+++++++++.||.|++||..+++.+..+..|...|.++.|++++++
T Consensus 30 ~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 30 DGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred CcEEEEEEeeCCCcEEEEe--cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 7889999999887544433 33445789999999999999999999999999988888888899999999999999889
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
+++++.|+.+ .+||+...+....+..+. ..+.++.|+|++.++++++.++.|++||+.+.+.+..+..|...+.++
T Consensus 108 ~~~~~~~~~i--~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 183 (289)
T cd00200 108 LSSSSRDKTI--KVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183 (289)
T ss_pred EEEecCCCeE--EEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE
Confidence 9998888885 789998777766665332 246789999998888888889999999998888888888898999999
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
.|+|+++.+++++.|+.+ ++||++..+.+..+..+. ..+.++.|+|++.++++++.|+.|++||..++..+..+.+
T Consensus 184 ~~~~~~~~l~~~~~~~~i--~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 184 AFSPDGEKLLSSSSDGTI--KLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred EECCCcCEEEEecCCCcE--EEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 999999999999989885 689998877766664332 3578899999999999888899999999998888888989
Q ss_pred cccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
|...|.+++|+|++..|++++.|+.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999999999995
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=254.74 Aligned_cols=243 Identities=26% Similarity=0.345 Sum_probs=219.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
+...|.+++|+|..++++++-..|.|.|||.++...++.+..-+-||++.+|-+..+++++|+.|..| |+++.++...
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~I--rVfnynt~ek 89 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQI--RVFNYNTGEK 89 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceE--EEEeccccee
Confidence 45569999999999999999999999999999999999998888999999999999999999999985 7899999999
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-cccceeccCcccceeEEEEcC-CCcEEEEeecCCceEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRC 182 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i 182 (304)
+..++.|+. =+.+++.+|...++++++.|.+|++||... ..+.+++.||+..|++++|.| |.+.||++|-|++|
T Consensus 90 V~~FeAH~D--yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV-- 165 (794)
T KOG0276|consen 90 VKTFEAHSD--YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV-- 165 (794)
T ss_pred eEEeecccc--ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE--
Confidence 998887653 368999999999999999999999999765 456778999999999999999 56899999999997
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCC--CEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSG--RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
++|.+.+..+-.++.++. .+|+++.|-+.| +||++|++|.+|+|||..+..++.++.||...|.++.|+|.=..++
T Consensus 166 KVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred EEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 589998888777777654 578999997665 7999999999999999999999999999999999999999999999
Q ss_pred EeecCCeeeeccccc
Q psy4754 261 SGSWDTTLRDEESKN 275 (304)
Q Consensus 261 sgs~D~~i~~~~~~~ 275 (304)
|||+|+++|+|+...
T Consensus 244 sgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKT 258 (794)
T ss_pred EecCCccEEEecCcc
Confidence 999999999998644
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=255.02 Aligned_cols=264 Identities=23% Similarity=0.328 Sum_probs=225.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
+.+.+++||..+.++..++... -+.+..|-|.++++++|...|.+.+||+.....+.+.++|.+.|++++.+||++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 3468999999999998776633 378899999999999999999999999999988888999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCee-----EeEEe--ccc---eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKE-----VACYK--KDS---ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~-----~~~~~--~~~---~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
.+++||.|+++ ++||+.-... -..++ ... ....+.++.+|||+++++.+--|.+|++|=+.+.+..-+
T Consensus 468 g~vT~saDktV--kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls 545 (888)
T KOG0306|consen 468 GFVTGSADKTV--KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS 545 (888)
T ss_pred ceEEecCCcEE--EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee
Confidence 99999999996 6888742211 11111 000 012367899999999999999999999998888777778
Q ss_pred ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 152 ~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+.||.-||.||.++||++.++|||.|+.|+ +|-+.-+.+...+-+|+ -.+.++.|-|+..++++++.|+.|+-||.
T Consensus 546 LYGHkLPV~smDIS~DSklivTgSADKnVK--iWGLdFGDCHKS~fAHd--DSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISPDSKLIVTGSADKNVK--IWGLDFGDCHKSFFAHD--DSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ecccccceeEEeccCCcCeEEeccCCCceE--Eeccccchhhhhhhccc--CceeEEEEcccceeEEEecCcceEEeech
Confidence 999999999999999999999999999975 78666666655544433 24689999999999999999999999999
Q ss_pred CCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 232 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 232 ~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
..-+.+.++.+|...|+|++.+|+|.+++|+|+|.+||+|+-..
T Consensus 622 ~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 622 EKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999997544
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=245.64 Aligned_cols=241 Identities=21% Similarity=0.292 Sum_probs=209.1
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
.+.|..+.|.|+|+-|++|++.|.+.+|+......-.-+.+|+.+|+++.|++++.+++||..|+.| +.|+......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i--KyWqpnmnnV- 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMI--KYWQPNMNNV- 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceE--Eecccchhhh-
Confidence 4558999999999999999999999999986655444467899999999999999999999999996 5788764332
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEe
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~ 185 (304)
..++.+. ...+++++|+|+...|++++.||+|+|||....+.-..+.||...|.+++|+|..-.+|++|.|..| ++|
T Consensus 173 k~~~ahh-~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV--KlW 249 (464)
T KOG0284|consen 173 KIIQAHH-AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV--KLW 249 (464)
T ss_pred HHhhHhh-hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCcee--Eee
Confidence 2222221 1357899999999999999999999999988777666789999999999999999999999999975 699
Q ss_pred eecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc-CCCEEEEeec
Q psy4754 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSW 264 (304)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~ 264 (304)
|.++++++.++..+. .-|..+.|+|++++|++++.|..++++|+.+-+++..+++|...|++++|+| ...+|++|+.
T Consensus 250 DprSg~cl~tlh~HK--ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 250 DPRSGSCLATLHGHK--NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred cCCCcchhhhhhhcc--ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 999999988887665 3578999999999999999999999999998888999999999999999999 5578999999
Q ss_pred CCeeeecccc
Q psy4754 265 DTTLRDEESK 274 (304)
Q Consensus 265 D~~i~~~~~~ 274 (304)
|+.|..|...
T Consensus 328 Dgsvvh~~v~ 337 (464)
T KOG0284|consen 328 DGSVVHWVVG 337 (464)
T ss_pred CCceEEEecc
Confidence 9999988765
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=232.79 Aligned_cols=260 Identities=20% Similarity=0.294 Sum_probs=223.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
+|.+++|||+.+++....+. .+...|..+++++-..|+.+++.|+.|+-||++.++.++...||-..|.||+.+|.-.
T Consensus 171 ~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLTLT--GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred CCceeEEEEcccCeEEEeec--chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 68999999999998765544 3344589999999999999999999999999999999999999999999999999989
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
.|+||+.|.++ |+||+++..++.++..+.. .+.++.+.|.+..+++|+.|++|++||++.++...++..|+..|.+
T Consensus 249 vl~t~grDst~--RvWDiRtr~~V~~l~GH~~--~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvra 324 (460)
T KOG0285|consen 249 VLVTGGRDSTI--RVWDIRTRASVHVLSGHTN--PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRA 324 (460)
T ss_pred eEEecCCcceE--EEeeecccceEEEecCCCC--cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeE
Confidence 99999999994 8999999999988876543 5678888888889999999999999999988888889999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe-
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL- 240 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~- 240 (304)
++.+|....||++|.|.. +-|++..++.+..+..+.. .+++++...|| ++++|++.|.+-+||-.++-.....
T Consensus 325 l~lhP~e~~fASas~dni---k~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 325 LCLHPKENLFASASPDNI---KQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred EecCCchhhhhccCCccc---eeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc
Confidence 999999999999999984 6899998887777666553 35677766665 6788999999999997765433222
Q ss_pred --e-----ccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 241 --M-----GHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 241 --~-----~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
. ..+..|++.+|...|..|+||..|++|++|.-
T Consensus 399 t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 399 TIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred ccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 1 13568999999999999999999999999953
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=220.13 Aligned_cols=258 Identities=21% Similarity=0.280 Sum_probs=218.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|.+||+||+..+.++..+. .|++.|..++.+.|+..+++|+.|..|.+||+++|+..+.+++|.+.|..++|+.+..
T Consensus 37 sdrtvrLWNp~rg~liktYs--ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS 114 (307)
T KOG0316|consen 37 SDRTVRLWNPLRGALIKTYS--GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS 114 (307)
T ss_pred CCceEEeecccccceeeeec--CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcce
Confidence 37789999999998876543 4566699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCC--CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccce
Q psy4754 82 AFSSGSWDTTLRCRLFDLRA--DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
.++|||.|.++ ++||-++ .++++.+.. ...++.++.+. +..+++|+.||+++.||++.++....+.+| +|
T Consensus 115 Vv~SgsfD~s~--r~wDCRS~s~ePiQilde--a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pi 186 (307)
T KOG0316|consen 115 VVASGSFDSSV--RLWDCRSRSFEPIQILDE--AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PI 186 (307)
T ss_pred EEEecccccee--EEEEcccCCCCccchhhh--hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cc
Confidence 99999999995 7898764 344444332 23456666654 578999999999999999998877667776 69
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
++++|+||++....++.|+++ ++.|-.+++.+..++++.....-..++++.....+++|++||.|++||+.....+..
T Consensus 187 t~vs~s~d~nc~La~~l~stl--rLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTL--RLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred eeEEecCCCCEEEEeecccee--eecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence 999999999999999999996 799999999988888776555556778899999999999999999999999888888
Q ss_pred eeccccc-eEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 240 LMGHENR-VSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 240 ~~~h~~~-i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+..|... |.++++.|.-..|+++. ++.+..|.
T Consensus 265 ~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 265 LSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eccCCceeEEeeecccCccceeEec-CCceecee
Confidence 8888877 89999999776666653 56777774
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=265.22 Aligned_cols=261 Identities=19% Similarity=0.236 Sum_probs=207.9
Q ss_pred CCceeEEeeccccc----e--EeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADK----E--VACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~----~--~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 74 (304)
.|++|+|||..+.. . .+..... ....+.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|.+.|+++
T Consensus 503 ~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l 581 (793)
T PLN00181 503 VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSI 581 (793)
T ss_pred CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEE
Confidence 37899999986421 0 0111111 123488999987 47899999999999999999999899999999999999
Q ss_pred EECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEc-CCCCEEEEEeCCCeEEEecCCccc-ccee
Q psy4754 75 QVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLKCC-RVNH 151 (304)
Q Consensus 75 ~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~-~~~~ 151 (304)
+|+| ++.+|+||+.|+++ ++||+.+...+..+.... .+.++.|+ +++.++++|+.|+.|++||+++.. .+..
T Consensus 582 ~~~p~~~~~L~Sgs~Dg~v--~iWd~~~~~~~~~~~~~~---~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 582 DYSSADPTLLASGSDDGSV--KLWSINQGVSIGTIKTKA---NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred EEcCCCCCEEEEEcCCCEE--EEEECCCCcEEEEEecCC---CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE
Confidence 9997 78999999999995 789999887776665432 35678884 578999999999999999998754 4667
Q ss_pred ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC------ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD------KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 152 ~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
+.+|...|.++.|. ++..+++++.|+++ ++||++.. +.+..+..+. ..+..++|+|++.+|++|+.|+.
T Consensus 657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~i--kiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTL--KLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred ecCCCCCEEEEEEe-CCCEEEEEECCCEE--EEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCE
Confidence 78999999999997 67799999999996 68998743 3444554443 34678899999999999999999
Q ss_pred EEEEeCCCceeeEEe-------------eccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 226 INVWDSLKCCRVNHL-------------MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 226 i~iwd~~~~~~~~~~-------------~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
|++|+.....++..+ ..|...|.+++|+|++..|++|+.|++|++|+.
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999997654333221 235567999999999999999999999999975
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=245.05 Aligned_cols=260 Identities=25% Similarity=0.353 Sum_probs=223.7
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~~ 81 (304)
+..|.+|+-.+++........ ...|+++.|+++|.+||.|..+|.|.|||..+...++.+.+ |...|-+++|. +.
T Consensus 196 g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS 271 (484)
T ss_pred cceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--Cc
Confidence 346899999999866554443 45699999999999999999999999999999999999988 99999999998 67
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeE-EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
.+.+|+.|+.| ..+|++..+.... +..+ ...++.+.|++|+.++|+|+.|+.+.|||.....+..++..|.+.|.
T Consensus 272 ~lssGsr~~~I--~~~dvR~~~~~~~~~~~H--~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 272 VLSSGSRDGKI--LNHDVRISQHVVSTLQGH--RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred eEEEecCCCcE--EEEEEecchhhhhhhhcc--cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 89999999996 5789987665544 3333 23478999999999999999999999999987788889999999999
Q ss_pred EEEEcC-CCcEEEEeec--CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEE--EeCCCcEEEEeCCCce
Q psy4754 161 CLQVSP-DGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA--GYNDYTINVWDSLKCC 235 (304)
Q Consensus 161 ~v~~sp-~~~~las~s~--d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s--g~~d~~i~iwd~~~~~ 235 (304)
+++|+| +...||+|+. |++ |++||..+++.+....... .|+++.|++..+-|++ |..++.|.||+..+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~--i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRC--IKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred EeeeCCCccCceEEcCCCcccE--EEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc
Confidence 999999 5568998874 666 4799999988877765553 5789999999876666 5677899999999988
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 236 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 236 ~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
++..+.+|..+|..+++||||..+++|+.|.++|+|+.-+
T Consensus 423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999999999999999999999999999999999997644
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=251.79 Aligned_cols=261 Identities=25% Similarity=0.310 Sum_probs=221.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce----eeeeecCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~s~ 78 (304)
..++|+|+..+..+. -.+.|...|.+++...+|.+|+|||.|.++++|.++++. ++....+|.+.|.+++++.
T Consensus 345 s~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred CCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc
Confidence 356999999887764 234445558889866678899999999999999875443 3455678999999999977
Q ss_pred CC-CeEEEEeCCCceEEEEeeeCCCeeEe---EE----eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce
Q psy4754 79 DG-TAFSSGSWDTTLRCRLFDLRADKEVA---CY----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 79 d~-~~l~sgs~D~~i~~~~wd~~~~~~~~---~~----~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
.+ ..|+|+|.|.++ ++|++...++.. .+ ....+.-.+++++++|+...+++|+.|.++++|++...+...
T Consensus 422 ~~asffvsvS~D~tl--K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTL--KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred cCccEEEEecCCceE--EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE
Confidence 55 489999999996 579987522211 11 000111137899999999999999999999999999888888
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
++.||+..|.+|.|+|..+.+||+|.|.+| ++|.+.+.+++.++.++. ..|..+.|-.+|+.|++++.||-|++|+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv--KIW~is~fSClkT~eGH~--~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTV--KIWSISTFSCLKTFEGHT--SAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceE--EEEEeccceeeeeecCcc--ceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 999999999999999999999999999996 589999999999998776 4678899999999999999999999999
Q ss_pred CCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 231 SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 231 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+.+.+++.++.+|+.+|++++.+|+..+++||+.|+.|.+|.
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999999999993
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=224.22 Aligned_cols=263 Identities=25% Similarity=0.337 Sum_probs=225.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT- 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~- 81 (304)
|.-|-+|+.....++. +....|...|..+.|.+|++.++++|.|.+++.||+++|+.++.+++|..-|.++.-+.-|-
T Consensus 68 Dr~I~LWnv~gdceN~-~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENF-WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred cceEEEEeccccccce-eeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCe
Confidence 5669999998876653 23335555699999999999999999999999999999999999999999999888544443
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
++.||+.|+++ ++||++....+..++.. +..+++.|..++..+.+|+-|+.|++||+++.....++.||.++|+.
T Consensus 147 lv~SgsdD~t~--kl~D~R~k~~~~t~~~k---yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~ 221 (338)
T KOG0265|consen 147 LVCSGSDDGTL--KLWDIRKKEAIKTFENK---YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITG 221 (338)
T ss_pred EEEecCCCceE--EEEeecccchhhccccc---eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceee
Confidence 67789999995 79999988777766443 34578999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCC----ceEEEeecCceee--eeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRAD----KEVACYKKDSILF--GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~----~~~~~~~~~~~~~--~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
+..+|+|..+.+-+.|.++ ++||.+.. +++..+..+.+.+ +...++|+|++.++.+|+.|+.+++||.....
T Consensus 222 lsls~~gs~llsnsMd~tv--rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 222 LSLSRYGSFLLSNSMDNTV--RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred EEeccCCCccccccccceE--EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc
Confidence 9999999999999999996 68998753 3356665544332 34578899999999999999999999998878
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 236 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 236 ~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.+..+.||.+.|.+++|+|....|.+++.|++|.+-++
T Consensus 300 ~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 300 ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 88899999999999999999999999999999987653
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=240.18 Aligned_cols=257 Identities=24% Similarity=0.338 Sum_probs=212.7
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
-|.||+|||.++-.++.. ...|..+|.|+.|. .+.+++||+|.+|++||++++++++++.+|-+.|..+.|+ ..
T Consensus 215 rDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng 288 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NG 288 (499)
T ss_pred ccCceEEeccccHHHHHh--hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CC
Confidence 378999999999877654 34555669999984 5699999999999999999999999999999999999998 45
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEe-ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
+++|+|.|.++ .+||+.....+.+.. ..++..+++.+.|+ .+++++++.|.+|++|++.+...++++.+|+..|-
T Consensus 289 ~mvtcSkDrsi--aVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIA 364 (499)
T KOG0281|consen 289 YMVTCSKDRSI--AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA 364 (499)
T ss_pred EEEEecCCcee--EEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccce
Confidence 99999999996 789998655432211 11223346666665 57999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce-----
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----- 235 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~----- 235 (304)
|+.+ .++++++||.|.+| ++||+..+.++..++++.- -+.++.| +.+.+++|..||+|+|||+.++.
T Consensus 365 ClQY--r~rlvVSGSSDntI--Rlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 365 CLQY--RDRLVVSGSSDNTI--RLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred ehhc--cCeEEEecCCCceE--EEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccccCCccc
Confidence 9987 57899999999996 7999999998888776653 3566666 67889999999999999976543
Q ss_pred ----eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 236 ----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 236 ----~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
++.++..|.++|..+.| |...++++|+|.+|-+||..++.+
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 35667789999999999 678999999999999999877653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=228.76 Aligned_cols=245 Identities=38% Similarity=0.491 Sum_probs=212.4
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|...|++++|+|+++++++++.||.+++|+..+++....+..|...+..+.|+|+++.|++++.|+.+ .+||+...+.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i--~i~~~~~~~~ 85 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTI--RLWDLETGEC 85 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeE--EEEEcCcccc
Confidence 34559999999999999999999999999999888788888999999999999999999999999995 7899987666
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
+..+..+. ..+.++.|++++.++++++.++.+.+||+.+.+....+..|...|.++.|+|+++++++++.|+.+ ++
T Consensus 86 ~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i--~i 161 (289)
T cd00200 86 VRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI--KL 161 (289)
T ss_pred eEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE--EE
Confidence 65555432 246788999998888888889999999998777777788899999999999999899988878885 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeec
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~ 264 (304)
||++..+.+..+..+. ..+.++.|+|+++.+++++.++.|++||..++..+..+..|..+|.+++|+|++.++++++.
T Consensus 162 ~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 162 WDLRTGKCVATLTGHT--GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEccccccceeEecCc--cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 9998877766665443 35789999999999999999999999999988888888889999999999999999999999
Q ss_pred CCeeeeccccccc
Q psy4754 265 DTTLRDEESKNRY 277 (304)
Q Consensus 265 D~~i~~~~~~~~~ 277 (304)
|+.|++|+...+.
T Consensus 240 ~~~i~i~~~~~~~ 252 (289)
T cd00200 240 DGTIRVWDLRTGE 252 (289)
T ss_pred CCcEEEEEcCCce
Confidence 9999999986543
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=257.82 Aligned_cols=258 Identities=20% Similarity=0.271 Sum_probs=218.3
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.+...|..++|+|..++++++-..|.|++||-.-+..+..|..|+++|+.++|+|++-+++|||.|..| ++|+..+.+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykI--kVWnYk~rr 84 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKI--KVWNYKTRR 84 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEE--EEEecccce
Confidence 444568999999999999999999999999999899999999999999999999999999999999986 679988877
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
++.++..+ ..=+..+.|++.-.++++++.|.+|+||+..++.++..+.||..+|+|..|+|....++|+|-|++| |
T Consensus 85 clftL~GH--lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV--R 160 (1202)
T KOG0292|consen 85 CLFTLLGH--LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV--R 160 (1202)
T ss_pred ehhhhccc--cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE--E
Confidence 77655443 2336788999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred EeeecCCceE---------------------------EEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce-
Q psy4754 184 LFDLRADKEV---------------------------ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC- 235 (304)
Q Consensus 184 ~~d~~~~~~~---------------------------~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~- 235 (304)
+||+..-+.. ..+-...+.-+|+-++|+|.-+++++|++|+.|++|....-+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 9997532110 001011122367889999999999999999999999864322
Q ss_pred -eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeecccc
Q psy4754 236 -RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRIT 287 (304)
Q Consensus 236 -~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~ 287 (304)
++.+..||.++|.|+-|+|...+++|.|+|++||+||..++..-..++....
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend 293 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND 293 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC
Confidence 4566789999999999999999999999999999999988776666654433
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=240.84 Aligned_cols=259 Identities=17% Similarity=0.233 Sum_probs=223.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
+.++|.|||-++...+..++.. .-.|.++.|-+-.+++++|+.|..||+|+.++++.++.|.+|.+.|++++.+|..-
T Consensus 33 ynG~V~IWnyetqtmVksfeV~--~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P 110 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVS--EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP 110 (794)
T ss_pred ecCeeEEEecccceeeeeeeec--ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCC
Confidence 4688999999999887776644 23488999999889999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
+++|+|.|.+||+|.|+.. ..+...++.|.+. +.+++|.| |.+.+++++-|++|++|.+.+..+..++.+|...|+
T Consensus 111 ~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~Hy--VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN 187 (794)
T KOG0276|consen 111 YVLTSSDDMTIKLWDWENE-WACEQTFEGHEHY--VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVN 187 (794)
T ss_pred eEEecCCccEEEEeeccCc-eeeeeEEcCcceE--EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcc
Confidence 9999999999876666643 4455666666542 56888988 466899999999999999999889999999999999
Q ss_pred EEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 161 CLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 161 ~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
||.+-| |..+++||+.|.++ ++||..+.++++++.++. .+++.+.|+|.-+.+++|++||+++||+..+=+...
T Consensus 188 ~Vdyy~~gdkpylIsgaDD~ti--KvWDyQtk~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 188 CVDYYTGGDKPYLISGADDLTI--KVWDYQTKSCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred eEEeccCCCcceEEecCCCceE--EEeecchHHHHHHhhccc--ccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 999976 44689999999996 589999999988887765 467899999999999999999999999987766666
Q ss_pred EeeccccceEEEEEccCCCEEEEeecCCeee
Q psy4754 239 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 239 ~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
++.-..++|+|++-.+.+..++.|...+.|.
T Consensus 264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred hhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 6666778999999999989999998777664
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=233.03 Aligned_cols=234 Identities=24% Similarity=0.375 Sum_probs=198.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
..+|+|+.+. ...+++|..|.+|+|||.++.++++.+.||.+.|.|+.+- .+.++|||.|.++ ++||+.+++++
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTv--rvWDv~tge~l 270 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTV--RVWDVNTGEPL 270 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceE--EEEeccCCchh
Confidence 4569999984 4578899999999999999999999999999999999985 5699999999995 78999999888
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc---ceeccCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
.++-.+.. .+..+.|+ +.++++++.|.++.+||+..... ...+.||...|+.|.|+ .++++++|.|.++
T Consensus 271 ~tlihHce--aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi-- 342 (499)
T KOG0281|consen 271 NTLIHHCE--AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI-- 342 (499)
T ss_pred hHHhhhcc--eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE--
Confidence 76654432 34456665 57999999999999999876543 23568999999999995 5599999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
++|+..+.+.+.++.++... +-+ .--.|+++++|++|.+|++||...|.+++.+.||++-|.|+.| |.+.++||
T Consensus 343 kvW~~st~efvRtl~gHkRG--IAC--lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSG 416 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRG--IAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 416 (499)
T ss_pred EEEeccceeeehhhhccccc--cee--hhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeec
Confidence 68999999988888777632 222 2346899999999999999999999999999999999999999 56899999
Q ss_pred ecCCeeeeccccccchh
Q psy4754 263 SWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 263 s~D~~i~~~~~~~~~~~ 279 (304)
+.||+||+||+....++
T Consensus 417 aYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDP 433 (499)
T ss_pred cccceEEEEecccccCC
Confidence 99999999999887766
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=255.78 Aligned_cols=262 Identities=18% Similarity=0.265 Sum_probs=206.5
Q ss_pred ceeEEeeccccceEeeeec---cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----e----eeeeecCCcCcEE
Q psy4754 4 NHCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----C----RVNHLMGHENRVS 72 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~---~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----~----~~~~~~~h~~~V~ 72 (304)
+-+++|+..+-+....+.. ..+...|.+++|+|+|+++|+|+.|++|+||+.... . +...+ .+...|.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCcee
Confidence 4467777776544322221 123444999999999999999999999999997531 1 11222 2456899
Q ss_pred EEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccce
Q psy4754 73 CLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 73 ~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
+++|++ ++++|++++.|++| ++||+.+.+.+..+..+. ..+.+++|+| ++.+|++|+.|+.|++||+.+...+.
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v--~lWd~~~~~~~~~~~~H~--~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVV--QVWDVARSQLVTEMKEHE--KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeE--EEEECCCCeEEEEecCCC--CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 999987 47899999999995 789999887777665543 3578999996 78899999999999999998887777
Q ss_pred eccCcccceeEEEEc-CCCcEEEEeecCCceEEEEeeecCCc-eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEE
Q psy4754 151 HLMGHENRVSCLQVS-PDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 228 (304)
Q Consensus 151 ~~~~h~~~v~~v~~s-p~~~~las~s~d~~i~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~i 228 (304)
++..+ ..|.++.|+ +++..+++|+.|+.| ++||++..+ .+..+..+. ..+..+.|. ++.+|++++.|++|++
T Consensus 613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I--~iwD~~~~~~~~~~~~~h~--~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 613 TIKTK-ANICCVQFPSESGRSLAFGSADHKV--YYYDLRNPKLPLCTMIGHS--KTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEecC-CCeEEEEEeCCCCCEEEEEeCCCeE--EEEECCCCCccceEecCCC--CCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 76644 679999994 578999999999986 689998765 344444433 356888886 7889999999999999
Q ss_pred EeCCC------ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 229 WDSLK------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 229 wd~~~------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
||+.. ...+..+.+|...+.+++|+|++.+||+|+.|++|++|+...+
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 99864 3567889999999999999999999999999999999986543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=222.92 Aligned_cols=250 Identities=21% Similarity=0.286 Sum_probs=214.2
Q ss_pred cccccc--eeEEEEcC---CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEe
Q psy4754 23 DSILFG--ATSVDFSV---SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 23 ~~~~~~--i~~~~~~~---~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~w 97 (304)
..++|. |-.++|+| +|-+|++++.||.-.+-+-.+|.-+.+|.+|++.|++.....+...-+|++.|-+- ++|
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadfta--kvw 86 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTA--KVW 86 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchh--hhh
Confidence 334444 88899985 78899999999999999999999999999999999999999888899999999885 689
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
|.-++..+..++..-. +..++|+.|.++|++|+.+..++++|+.... +..++.+|++.|..+.|.-..+.|++.+.
T Consensus 87 ~a~tgdelhsf~hkhi---vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHI---VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhhhhe---eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 9998888887765322 4689999999999999999999999987654 56678999999999999888888888899
Q ss_pred CCceEEEEeeecCCceEEEeecCce-------------------------------------eeeeeEEEEcCCCCEEEE
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSI-------------------------------------LFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~s~~g~~l~s 219 (304)
|++| |+||.++++.++.+..... +..|.+...+|+...+++
T Consensus 164 d~tV--RLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 164 DKTV--RLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA 241 (334)
T ss_pred CCce--EEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEe
Confidence 9995 7999999877665542211 124667778899999999
Q ss_pred EeCCCcEEEEeCCCceeeEEe-eccccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 220 GYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
|++|..++.||..+++.+..+ ++|.++|.||.|+|||...|+||.|++||||...+++.+
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999999999999999998886 899999999999999999999999999999987766633
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=212.88 Aligned_cols=249 Identities=25% Similarity=0.373 Sum_probs=212.5
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|.-.++.+.+..+|.+|.+++.|.++.+|-...|+.+.++.||.+.|+|+++..+.++|+||+.|.++ ++||+.++++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~--kLWDv~tGk~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTA--KLWDVETGKQ 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecccccee--EEEEcCCCcE
Confidence 33458999999999999999999999999999999999999999999999999999999999999995 7999999999
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEE-----eCCCeEEEecCC-------ccccceeccCcccceeEEEEcCCCcEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAG-----YNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg-----~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~la 172 (304)
+..++... .+..+.|++++++++.. +..+.|.++|++ ..+++..+..+...++.+.|.|-++.++
T Consensus 87 la~~k~~~---~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 87 LATWKTNS---PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred EEEeecCC---eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 98887654 45789999999988775 345789999987 3445666677888899999999999999
Q ss_pred EeecCCceEEEEeeecCCceEEE-eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe-----------
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL----------- 240 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~----------- 240 (304)
+|..|+.| ..||+++++.+.. ...+. ..++.+.++||..++++++.|.+.++||..+.+.++++
T Consensus 164 ~Ghe~G~i--s~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aai 239 (327)
T KOG0643|consen 164 AGHEDGSI--SIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAI 239 (327)
T ss_pred EecCCCcE--EEEEcccCceeeechhhhc--cccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceec
Confidence 99999996 6899999765433 22232 36789999999999999999999999997654443333
Q ss_pred --------------------------------------------eccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 241 --------------------------------------------MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 241 --------------------------------------------~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+||-+||++|+|+|+|+.++||++|+.||+-..+..
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 389999999999999999999999999999988888
Q ss_pred chhhee
Q psy4754 277 YMQYLL 282 (304)
Q Consensus 277 ~~~~~~ 282 (304)
|....+
T Consensus 320 YF~~~~ 325 (327)
T KOG0643|consen 320 YFDFKF 325 (327)
T ss_pred hhheEe
Confidence 866544
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=232.51 Aligned_cols=260 Identities=22% Similarity=0.282 Sum_probs=214.2
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|-.|++||....+.-..-.......+|++++|.+++..+++++.|+.+++|++...+...++.+|.+.|+++.|......
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR 275 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc
Confidence 44699999998863222222334445999999999999999999999999999999999999999999999999987777
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
+++|+.|.++ ++||+....+...+-... .+..+..+ ...+++|..|++|++||++...+..+...+. .|++|
T Consensus 276 vVsgs~DRti--K~WDl~k~~C~kt~l~~S---~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl 347 (459)
T KOG0288|consen 276 VVSGSADRTI--KLWDLQKAYCSKTVLPGS---QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSL 347 (459)
T ss_pred eeeccccchh--hhhhhhhhheeccccccc---cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeE
Confidence 9999999996 689998765554322111 12233333 5678899999999999999988888877774 99999
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee--eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL--FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
..++++..+.+++.|.++ .+.|+++.+...++...... ...+.+.|||++.|+++|+.||.|+||++.+++....+
T Consensus 348 ~ls~~g~~lLsssRDdtl--~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDTL--KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred eeccCCeEEeeecCCCce--eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 999999999999999996 58999998877777654322 34678999999999999999999999999999888887
Q ss_pred ecccc--ceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 241 MGHEN--RVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 241 ~~h~~--~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
..... .|++++|+|-|.+|++++.++.+++|.
T Consensus 426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 76544 499999999999999999999999994
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=225.87 Aligned_cols=246 Identities=25% Similarity=0.352 Sum_probs=194.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC---CeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG---TAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~---~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
|+++... ++.++||+.||++++||.. |+.++.+.||.++|.+++|.... ..|+++|.|.+++++.|+......-
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~ 184 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK 184 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh
Confidence 6667665 6789999999999999984 77888899999999988875433 3599999999986655555432111
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC-------------------------ccccceeccCccccee
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-------------------------KCCRVNHLMGHENRVS 160 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~-------------------------~~~~~~~~~~h~~~v~ 160 (304)
......++..++.++...+++..+++|+.|.++.+|+.. ++.++.++.||+.+|.
T Consensus 185 ~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs 264 (423)
T KOG0313|consen 185 ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS 264 (423)
T ss_pred HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee
Confidence 111111233457789999999999999999999999821 1223456789999999
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce---ee
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RV 237 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~---~~ 237 (304)
+|.|++ ...+.++|+|++| +.||+.+++......... ..++++++|..++|++|+.|..|++||.+++. ..
T Consensus 265 ~V~w~d-~~v~yS~SwDHTI--k~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 265 SVVWSD-ATVIYSVSWDHTI--KVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred eEEEcC-CCceEeecccceE--EEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence 999997 6689999999996 689999988876665543 45899999999999999999999999987653 35
Q ss_pred EEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccc-hhheee
Q psy4754 238 NHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRY-MQYLLR 283 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~-~~~~~~ 283 (304)
.++.+|.++|.++.|+|.. .+|++||+|+++++||.+... ..|-..
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 6789999999999999955 678999999999999988755 344333
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=211.53 Aligned_cols=240 Identities=22% Similarity=0.289 Sum_probs=210.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
...|.++.|.-+|+|.+|+++|.+||+|++..+..+++..+|..+|..++.+.|...+++|+.|+.+ .+||+.+++.+
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v--~vwDV~TGkv~ 94 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV--QVWDVNTGKVD 94 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE--EEEEcccCeee
Confidence 3459999999999999999999999999999999999999999999999999999999999999995 78999999999
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc--cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
+.+..+.. .++.+.|+.+...+++|+-|..+++||-++ .++++.+....+.|.++... +..+++||.|+++ |
T Consensus 95 Rr~rgH~a--qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv--R 168 (307)
T KOG0316|consen 95 RRFRGHLA--QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV--R 168 (307)
T ss_pred eecccccc--eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE--E
Confidence 98877643 578999999999999999999999999765 45677788888999999886 4578999999995 7
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE--EEEEccCCCEEEE
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS--CLQVSPDGTAFSS 261 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~--~l~~sp~g~~las 261 (304)
.||++.+.....+-. .+++++.|++++++.++++-|+++++.|-.+++.+..++||...=. ...++....++++
T Consensus 169 tydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 169 TYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 999998877655433 3679999999999999999999999999999999999999976433 3355666689999
Q ss_pred eecCCeeeeccccccc
Q psy4754 262 GSWDTTLRDEESKNRY 277 (304)
Q Consensus 262 gs~D~~i~~~~~~~~~ 277 (304)
||+|+.+.+|++.+..
T Consensus 245 gSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDET 260 (307)
T ss_pred ccCCceEEEEEeccce
Confidence 9999999999986654
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=219.39 Aligned_cols=260 Identities=19% Similarity=0.230 Sum_probs=208.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
||+.=.||++.++..+. .+..|..+|+++.|+.+|.+||||+.+|.|+||...++.....+..--+.+.=+.|+|.+.
T Consensus 84 gDD~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 84 GDDLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred CCceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 67788999999998543 4556677799999999999999999999999999999876666644445566689999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC-------
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG------- 154 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------- 154 (304)
.|+.|+.|+.+ |+|.+..+.....+..+.. .+++=.|.|+|+.++++..||+|++||..+++++..+.+
T Consensus 162 illAG~~DGsv--Wmw~ip~~~~~kv~~Gh~~--~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~ 237 (399)
T KOG0296|consen 162 ILLAGSTDGSV--WMWQIPSQALCKVMSGHNS--PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELP 237 (399)
T ss_pred EEEeecCCCcE--EEEECCCcceeeEecCCCC--CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCC
Confidence 99999999995 8999988766666665442 456667999999999999999999999988776544330
Q ss_pred --------------------------------------------cccceeEEEEcC---CCcEEEEeecCCceEEEEeee
Q psy4754 155 --------------------------------------------HENRVSCLQVSP---DGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 155 --------------------------------------------h~~~v~~v~~sp---~~~~las~s~d~~i~i~~~d~ 187 (304)
+...+.+|.+.| .=.++|+|+-|++| .+||+
T Consensus 238 ~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i--~iyD~ 315 (399)
T KOG0296|consen 238 CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI--AIYDL 315 (399)
T ss_pred ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE--EEEec
Confidence 111112222222 33457888899986 58998
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
...+........ .+|+.+-|-+ ..+|++++.+|+|+.||.++|+.+.++.||...|.+++++|+.+.++|+|.|++
T Consensus 316 a~~~~R~~c~he---~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 316 AASTLRHICEHE---DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred ccchhheeccCC---CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 776544433333 3578999999 889999999999999999999999999999999999999999999999999999
Q ss_pred eeeccc
Q psy4754 268 LRDEES 273 (304)
Q Consensus 268 i~~~~~ 273 (304)
.++++.
T Consensus 392 a~VF~v 397 (399)
T KOG0296|consen 392 ALVFEV 397 (399)
T ss_pred EEEEec
Confidence 998864
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=221.93 Aligned_cols=244 Identities=23% Similarity=0.274 Sum_probs=204.8
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC------------c------eeeeeecCCcCcEEEEEECCCCCeEEEE
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK------------C------CRVNHLMGHENRVSCLQVSPDGTAFSSG 86 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~------------~------~~~~~~~~h~~~V~~l~~s~d~~~l~sg 86 (304)
|...+.+.+|++||.++||||.|..|+|.|++. + -.++++..|.++|.++.|+|....|+||
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 333478999999999999999999999999751 1 2478889999999999999999999999
Q ss_pred eCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee---ccCcccceeEEE
Q psy4754 87 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH---LMGHENRVSCLQ 163 (304)
Q Consensus 87 s~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~v~ 163 (304)
+.|+++ +++|+......+.++.-.....+.++.|+|.|++++.|...-++++||+.+.++... -.+|++.|++|.
T Consensus 191 srD~tv--KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 191 SRDNTV--KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR 268 (430)
T ss_pred cCCCeE--EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence 999996 688986432221111111123568999999999999999999999999999877543 357999999999
Q ss_pred EcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee--
Q psy4754 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-- 241 (304)
Q Consensus 164 ~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~-- 241 (304)
+++.+++.+++|.||.| ++||--+++++.++........+++..|..+|+|+++.+.|..+++|.+.++.++.++.
T Consensus 269 Ys~t~~lYvTaSkDG~I--klwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 269 YSSTGSLYVTASKDGAI--KLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ecCCccEEEEeccCCcE--EeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 99999999999999996 69999988888777544334568899999999999999999999999988877776655
Q ss_pred -----------------------------------------------ccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 242 -----------------------------------------------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 242 -----------------------------------------------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
||++.+..+.=||.+..++|+|.|..+|+|=
T Consensus 347 g~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 347 GTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 7889999999999999999999999999993
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=209.91 Aligned_cols=208 Identities=27% Similarity=0.353 Sum_probs=174.6
Q ss_pred eeeeecCCcCcEEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCeeEeEE--eccceeeceeeeEEcCCCCEEEEEeCCC
Q psy4754 60 RVNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACY--KKDSILFGATSVDFSVSGRLLFAGYNDY 136 (304)
Q Consensus 60 ~~~~~~~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~sg~~dg 136 (304)
.++.+.+|.+.|..++|+|- |..|+|||.|+.| ++|+........+. -.+.+...+.+++++|.|++|++|+.|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~v--riw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAV--RIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceE--EEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 45668899999999999997 8899999999995 78998753332222 1223334688999999999999999999
Q ss_pred eEEEecCC--ccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc---eEEEeecCceeeeeeEEEEc
Q psy4754 137 TINVWDSL--KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK---EVACYKKDSILFGATSVDFS 211 (304)
Q Consensus 137 ~i~iwd~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~s 211 (304)
++.||.-. ..+++..+.||..+|.+++|+++|++||+||.|+++ ++|...++. +..++..+. ..|..+.|+
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV--WiWe~deddEfec~aVL~~Ht--qDVK~V~WH 159 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV--WIWEIDEDDEFECIAVLQEHT--QDVKHVIWH 159 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE--EEEEecCCCcEEEEeeecccc--ccccEEEEc
Confidence 99999744 346788899999999999999999999999999995 899887543 344555554 467889999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC---CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 212 VSGRLLFAGYNDYTINVWDSL---KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 212 ~~g~~l~sg~~d~~i~iwd~~---~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
|...+|++++.|.+|++|+-. ..+++.++.+|+..|++++|+|.|..|++++.|+++++|.+
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 999999999999999999644 45678999999999999999999999999999999999974
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=223.22 Aligned_cols=264 Identities=22% Similarity=0.273 Sum_probs=226.9
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|+++-++|-..++.+..++ .+...|+.+.|+|+...+++++.|..|++|...........+.|..+|+.+..+|.|+|
T Consensus 240 d~~av~~d~~s~q~l~~~~--Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeY 317 (506)
T KOG0289|consen 240 DKTAVLFDKPSNQILATLK--GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEY 317 (506)
T ss_pred CCceEEEecchhhhhhhcc--CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcE
Confidence 4578888888888776655 33445899999999999999999999999999887777778899999999999999999
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
|++++.|+++ ...|+.++.++.....+......++..|+|||..|.+|..|+.|++||+.....+..|.+|+++|..+
T Consensus 318 llsAs~d~~w--~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 318 LLSASNDGTW--AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred EEEecCCceE--EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE
Confidence 9999999995 57888888887766554333456899999999999999999999999999988888999999999999
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC--CCceeeEEe
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVNHL 240 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~--~~~~~~~~~ 240 (304)
+|+.+|-++|++..|+.| ++||+|..+...++..... .++.++.|.+.|.+|+.+++|=.|++++- ....++.++
T Consensus 396 ~FsENGY~Lat~add~~V--~lwDLRKl~n~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSV--KLWDLRKLKNFKTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EeccCceEEEEEecCCeE--EEEEehhhcccceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 999999999999999985 6999999888777765543 36899999999999999987766666652 256678888
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..|.+..+++.|..+.++++++|.|+.+|++.+
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEeec
Confidence 889999999999999999999999999888743
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=220.10 Aligned_cols=262 Identities=24% Similarity=0.363 Sum_probs=205.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCC---CEEEEeeCCCcEEEEeCCCcee----eeeecCCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG---RLLFAGYNDYTINVWDSLKCCR----VNHLMGHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g---~~l~tg~~dg~v~iwd~~~~~~----~~~~~~h~~~V~~l 74 (304)
||+++|+||...+.. .+...+...|.+++|.... ..++++|.|.++++|..+.++. ++.-+||...|.++
T Consensus 123 YDg~~riWd~~Gk~~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 123 YDGTSRIWDLKGKSI---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred cCCeeEEEecCCceE---EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 799999999988643 3344555558888875433 3699999999999999877643 23335999999999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCC--eeEeEE---------------------eccceeeceeeeEEcCCCCEEEE
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRAD--KEVACY---------------------KKDSILFGATSVDFSVSGRLLFA 131 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~--~~~~~~---------------------~~~~~~~~~~~~~~s~~~~~l~s 131 (304)
+..++|..++|||+|.++ .+|+.... ..+... ...++...+.++.|++ ...+++
T Consensus 200 sv~~sgtr~~SgS~D~~l--kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS 276 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTML--KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS 276 (423)
T ss_pred EecCCCCeEEeeccccee--eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence 999999999999999996 57884321 111100 0111223467888877 778999
Q ss_pred EeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce---EEEeecCceeeeeeEE
Q psy4754 132 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSV 208 (304)
Q Consensus 132 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~ 208 (304)
++.|.+|+.||+.++....++.+. .+..++.++|..+++|+|+.|..+ ++||.+.+.- ...+..|. .-|.++
T Consensus 277 ~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~i--rl~DPR~~~gs~v~~s~~gH~--nwVssv 351 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHI--RLWDPRTGDGSVVSQSLIGHK--NWVSSV 351 (423)
T ss_pred ecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCce--eecCCCCCCCceeEEeeecch--hhhhhe
Confidence 999999999999998887776654 578999999999999999999985 7999987642 33343443 467899
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEeCCCce-eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 209 DFSVSGRL-LFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 209 ~~s~~g~~-l~sg~~d~~i~iwd~~~~~-~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.++|...+ |++|+.|+++++||++... ++..+.+|...|.++.|+ ++..++||+.|++||++...+
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999876 6679999999999998877 899999999999999997 578999999999999986543
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=212.40 Aligned_cols=255 Identities=23% Similarity=0.311 Sum_probs=206.4
Q ss_pred eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC-CceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEE
Q psy4754 18 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 18 ~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~ 96 (304)
+......+...|..+.|+|+|.+||||+.|..|.+|++. ..+-.-.+++|++.|..+.|.+|++.++|+|.|+++ +.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v--~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV--RG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE--EE
Confidence 444445555559999999999999999999999999964 445556678999999999999999999999999995 78
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEee
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
||..+++.++.++.+... ++++..+. ...++.+|+.|+++++||+++...++++. .+.+++++.|.-++..+.+|+
T Consensus 117 wD~~tG~~~rk~k~h~~~--vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSF--VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred Eecccceeeehhccccce--eeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence 999999998877665432 23333222 23467789999999999999877776643 457899999999999999999
Q ss_pred cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----ceeeEEeeccc----cce
Q psy4754 176 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHE----NRV 247 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~----~~~~~~~~~h~----~~i 247 (304)
-|+.| ++||++....+.+..++. -.++.+..+|+|.++.+-+-|.++++||+.. ..++..+.+|. ...
T Consensus 194 Idn~i--kvWd~r~~d~~~~lsGh~--DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 194 IDNDI--KVWDLRKNDGLYTLSGHA--DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ccCce--eeeccccCcceEEeeccc--CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 99996 589999988888877664 3579999999999999999999999999753 33477777753 345
Q ss_pred EEEEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 248 SCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 248 ~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
..++|||+++.+..||.|+.+.+||....-..|.
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK 303 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEE
Confidence 6779999999999999999999998766443443
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=218.22 Aligned_cols=260 Identities=18% Similarity=0.275 Sum_probs=223.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|+-+|||+...+... . ...|...|.++.|+.+|.+|++++.|+++.+||..+++....+.-|+.+-..+.|-.+ .
T Consensus 255 ~~G~~riw~~~G~l~~-t--l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~ 330 (524)
T KOG0273|consen 255 EDGEARIWNKDGNLIS-T--LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-D 330 (524)
T ss_pred cCcEEEEEecCchhhh-h--hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-c
Confidence 4778999999887432 2 2345556999999999999999999999999999999999999889988777888654 4
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
.+++++.|+.| +++.+....+...+..|.. .+..+.|.|.+.+|++++.|+++++|.+........+.+|...|..
T Consensus 331 ~F~ts~td~~i--~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 331 EFATSSTDGCI--HVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred eEeecCCCceE--EEEEecCCCcceeeecccC--ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 68888999996 5777777777777766432 5788999999999999999999999998888888889999999999
Q ss_pred EEEcCCC---------cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 162 LQVSPDG---------TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 162 v~~sp~~---------~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
+.|+|++ ..+++++.|+++ ++||+..+.++.++-.+. .+|.+++|+|+|+|+|+|+.||.|.+|+..
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV--~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTV--KLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeE--EEEEccCCceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 9999954 369999999996 699999999999885554 478999999999999999999999999999
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+++.++.+.+ .+.|..|.|+.+|.+|..+..|+.+.+-|++
T Consensus 483 ~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 483 TGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred chheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9998888765 5679999999999999999999999987764
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=208.15 Aligned_cols=265 Identities=19% Similarity=0.292 Sum_probs=214.2
Q ss_pred CCCceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCC-ceeeeeecCCcCcEEEEEECC
Q psy4754 1 MGKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 1 ~~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|.+++-|.++...+-+..++...-..++..++|+++. ..+++++-||+++|||... ..+++.++.|..+|.++.|++
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccc
Confidence 37788999999755444444444445568899999875 5788999999999999653 357888899999999999998
Q ss_pred -CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 79 -DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 79 -d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
+++.++++|||++| ++|+....+.+.++..+.. -+-...|+|. ++.+++++.|+++++||++...+...+..|.
T Consensus 115 ~~r~~~ltsSWD~Ti--KLW~~~r~~Sv~Tf~gh~~--~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTI--KLWDPNRPNSVQTFNGHNS--CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred ccceeEEeeccCCce--EeecCCCCcceEeecCCcc--EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc
Confidence 56688889999996 6899998888888776532 3456778874 6789999999999999988766666688999
Q ss_pred cceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCC
Q psy4754 157 NRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 157 ~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~ 233 (304)
.+|.++.|+. +...++||+.|+.| +.||++..+. +..+..+. ..|..+.|||.. ..||+++.|-+++|||.+.
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~v--r~wDir~~r~pl~eL~gh~--~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLV--RGWDIRNLRTPLFELNGHG--LAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceE--EEEehhhccccceeecCCc--eEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 9999999986 66789999999996 7999998653 44444443 568899999985 6789999999999999875
Q ss_pred cee-eEEeeccccceEEEEEcc-CCCEEEEeecCCeeeeccc
Q psy4754 234 CCR-VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 234 ~~~-~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~ 273 (304)
+.. +.+...|.+-+..+.||+ ++.++|+.++|..+.+|++
T Consensus 267 ~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 267 QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 443 445667999999999998 6789999999999999974
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-30 Score=218.85 Aligned_cols=266 Identities=21% Similarity=0.294 Sum_probs=212.4
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC----CCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----DYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.++|||||......+.+-+..-....|..++|+++++.|++-+. -|.+.+||. |..+..+.||+..|.+++|-|
T Consensus 80 sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 80 SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC--CCccceeeccceeEeeeeccC
Confidence 47899999998765544444434444999999999987765543 267778884 566777899999999999998
Q ss_pred CCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc---C
Q psy4754 79 DGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---G 154 (304)
Q Consensus 79 d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~ 154 (304)
..- .++|||.|.++ -+++-.--+--..++.|.. =+.++.|+|||.+|++++.||++.+||-.+++.+..+. +
T Consensus 158 sRPfRi~T~sdDn~v--~ffeGPPFKFk~s~r~Hsk--FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTV--AFFEGPPFKFKSSFREHSK--FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred CCceEEEeccCCCeE--EEeeCCCeeeeeccccccc--ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence 543 79999999996 4565332222222223322 26799999999999999999999999999998888876 8
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee-eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-FGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
|++.|.+++|+||++.|+|+|.|.++ ++||+.+.+.+.++.-.... -.-..+.|- ...|++.+.+|+|.+++...
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~--KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTI--KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceE--EEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccC
Confidence 99999999999999999999999996 68999999888887543321 111233343 67888999999999999988
Q ss_pred ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 234 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+..+..+.||...|++|+.+||+.+|.|||+|+.|--|+...++.
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 889999999999999999999999999999999999999877663
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=231.74 Aligned_cols=270 Identities=19% Similarity=0.275 Sum_probs=217.8
Q ss_pred CceeEEeeccccceEeeeeccccccc--eeEEEEc-CCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFG--ATSVDFS-VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~--i~~~~~~-~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
++++.+||..+.+... ...++. |..+.|- |+.++||.+++.+.+|+|+..+..+. -+.||.+.|.+++...+
T Consensus 302 eQnl~l~d~~~l~i~k----~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVK----QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSS 376 (775)
T ss_pred cceEEEEEccccEEeh----hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeeccc
Confidence 6778889887765432 222333 7888875 67789999999999999998776544 57899999999997777
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeE-eEE-eccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCcccc-----c--
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEV-ACY-KKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCR-----V-- 149 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~-~~~-~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~-----~-- 149 (304)
|.+|+|||.|+++ ++|.++..... .++ +...+...+.+++++.. ..+|++++.|.++++|++...+. .
T Consensus 377 g~llat~sKD~sv--ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 377 GDLLATGSKDKSV--ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred CcEEEEecCCceE--EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 8899999999995 78987432221 111 11222223556666543 34789999999999999876211 1
Q ss_pred --eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEE
Q psy4754 150 --NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 227 (304)
Q Consensus 150 --~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~ 227 (304)
.+...|...|++|+++|+.+++||||.|++. ++|+++......++.+|.. ++.++.|+|..+.++++|.|++|+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta--KiW~le~~~l~~vLsGH~R--Gvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTA--KIWDLEQLRLLGVLSGHTR--GVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccce--eeecccCceEEEEeeCCcc--ceEEEEeccccceeEeccCCceEE
Confidence 1235799999999999999999999999996 5899998888888888764 689999999999999999999999
Q ss_pred EEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 228 VWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 228 iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
||.+.+..+++++.||...|.-+.|-.+|+.|+|++.||.||+|+.++.-+...+.
T Consensus 531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 99999999999999999999999999999999999999999999998877766555
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=205.56 Aligned_cols=260 Identities=23% Similarity=0.295 Sum_probs=212.2
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
|++++|||..+++.+.... .+.+++..+.|......++.++. |.+||.-++.+++.++.|.||.+.|.+|+.+|-+
T Consensus 35 dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~ 112 (311)
T KOG1446|consen 35 DDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD 112 (311)
T ss_pred CCeEEEEEcCCCceeeEee--cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC
Confidence 6789999999998876644 55678888999765555555555 8999999999999999999999999999999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceecc---Cc
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLM---GH 155 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~---~h 155 (304)
+.++|+|.|++| ++||++..++...+.... -..++|.|+|-.+|++.....|++||++... +..++. +-
T Consensus 113 d~FlS~S~D~tv--rLWDlR~~~cqg~l~~~~----~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~ 186 (311)
T KOG1446|consen 113 DTFLSSSLDKTV--RLWDLRVKKCQGLLNLSG----RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND 186 (311)
T ss_pred CeEEecccCCeE--EeeEecCCCCceEEecCC----CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC
Confidence 999999999995 799999877776554322 2357899999999999888899999988652 333332 34
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceee-eeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF-GATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
..+.+.|.|||||+.+..+...+.+ .+.|.-.+.....+....... ......|+||++++++|+.||+|++|++.++
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~--~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFI--YLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcE--EEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 5678999999999998887777764 578888888777765443222 1246789999999999999999999999999
Q ss_pred eeeEEeec-cccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 235 CRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 235 ~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
..+..+++ +.+++.|+.|+|.-.++||++ ..+-+|-+.
T Consensus 265 ~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 265 KKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred cEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 99999999 799999999999888888774 578888554
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=235.36 Aligned_cols=259 Identities=25% Similarity=0.369 Sum_probs=222.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
++.++++||..++.+... +...|..+|.+++|...+.++++|+.|.++++||..+|++.+.+.+|...|+++... ..
T Consensus 226 ~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~ 302 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PF 302 (537)
T ss_pred CCceeEEeecccceEEEe-eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--Cc
Confidence 578899999999987654 234556679999998778899999999999999999999999999999999998876 45
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
.+++||.|.+| ++|++.++..+..+..+ ...+.++.++ +.++++|+.|++|++||..+.+++.++.+|..+|.+
T Consensus 303 ~~~sgs~D~tV--kVW~v~n~~~l~l~~~h--~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~s 376 (537)
T KOG0274|consen 303 LLVSGSRDNTV--KVWDVTNGACLNLLRGH--TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYS 376 (537)
T ss_pred eEeeccCCceE--EEEeccCcceEEEeccc--cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEE
Confidence 88899999996 68999998888877753 3456777665 789999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
+.+.+. ..+++|+.|++| ++||+++. +++.++..+... + -.+...+++|++++.|++|++||..+++++..+
T Consensus 377 l~~~~~-~~~~Sgs~D~~I--kvWdl~~~~~c~~tl~~h~~~--v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 377 LIVDSE-NRLLSGSLDTTI--KVWDLRTKRKCIHTLQGHTSL--V--SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred EEecCc-ceEEeeeeccce--EeecCCchhhhhhhhcCCccc--c--cccccccceeEeccccccEEEeecccCceeeee
Confidence 988764 799999999986 68999998 787777666431 2 234567899999999999999999999999999
Q ss_pred ec-cccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 241 MG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 241 ~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
.+ |...|+++++. ...+++++.|+++++||++.+.+
T Consensus 450 ~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 450 EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 99 77899999887 46788999999999999877553
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=221.91 Aligned_cols=239 Identities=20% Similarity=0.240 Sum_probs=208.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee--------eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~--------~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
+-|..|+|||++|++|+.||-|.+||..+|+..+ .+..|+++|.|+.|+.|.+.|+||+.||.| ++|.+.
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI--KvWri~ 293 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI--KVWRIE 293 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE--EEEEEe
Confidence 6789999999999999999999999988875433 344688999999999999999999999996 689999
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
++.+++.+... +..+++++.||.|+..+++++.|.++++--+.+++++.++.||...|+...|++||.+++++|.|+++
T Consensus 294 tG~ClRrFdrA-HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 294 TGQCLRRFDRA-HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred cchHHHHhhhh-hccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 99998877632 23478999999999999999999999999999999999999999999999999999999999999996
Q ss_pred EEEEeeecCCceEEEeecCcee---------------------------------------------eeeeEEEEcCCCC
Q psy4754 181 RCRLFDLRADKEVACYKKDSIL---------------------------------------------FGATSVDFSVSGR 215 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~s~~g~ 215 (304)
++|+..+.+++.+++..... ....+.+.+|.|+
T Consensus 373 --kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 373 --KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred --EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc
Confidence 58998776655544321100 1234567899999
Q ss_pred EEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 216 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 216 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
++-+.++|+.++-|...++...+++.-|+..|..++-+|..+.||+=|+|+.+++|.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999998899999999999999999999999999999999995
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=234.17 Aligned_cols=258 Identities=22% Similarity=0.301 Sum_probs=214.8
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
.+.|++||-.=+.++..|. .|...|..++|+|.++++++|+.|.+|++|+..+..++.++.||-+.|+++.|++.--+
T Consensus 30 sG~IQlWDYRM~tli~rFd--eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFD--EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred CceeeeehhhhhhHHhhhh--ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence 4679999999887655433 45566999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-------c--------
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-------C-------- 147 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-------~-------- 147 (304)
++|+|.|.|| ++|+..+.+++.++..+.+. +.+..|+|....+++++-|.+|++||+..- .
T Consensus 108 IlSASDDQTI--rIWNwqsr~~iavltGHnHY--VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 108 ILSASDDQTI--RIWNWQSRKCIAVLTGHNHY--VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred EEEccCCCeE--EEEeccCCceEEEEecCceE--EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 9999999996 67888888999998887753 468899999999999999999999996410 0
Q ss_pred ------c-------c-eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC
Q psy4754 148 ------R-------V-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 213 (304)
Q Consensus 148 ------~-------~-~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~ 213 (304)
. + ..+.||...|+-++|+|.-..++||+.|..|++|-|+....-.+-+..++ ..+|.++.|+|.
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH--~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH--YNNVSSVLFHPH 261 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc--cCCcceEEecCc
Confidence 0 0 12457888899999999999999999999986444333222223333333 357899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
.+++++.++|++|+|||+.+.+.+.++..-+++-+.++-+|..+.+|.|-..|.+
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence 9999999999999999999999999998888999999999999999887544433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=226.88 Aligned_cols=249 Identities=18% Similarity=0.210 Sum_probs=192.0
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-------------eeecCCcCcEEEEEECC-CCCeEEEEeCCCceE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-------------NHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLR 93 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-------------~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~ 93 (304)
.|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|+||+.|++|
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI- 100 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI- 100 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE-
Confidence 3666777778777788888888888886433211 23678999999999999 88999999999996
Q ss_pred EEEeeeCCCe-------eEeEEeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEc
Q psy4754 94 CRLFDLRADK-------EVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 165 (304)
Q Consensus 94 ~~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~s 165 (304)
++||+.... .+..+..+ ...+.++.|+|++ .+|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 101 -kIWdi~~~~~~~~~~~~l~~L~gH--~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 101 -MGWGIPEEGLTQNISDPIVHLQGH--TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred -EEEecCCCccccccCcceEEecCC--CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 689987542 23333333 2356789999985 689999999999999999888888888999999999999
Q ss_pred CCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe----CCCcEEEEeCCCce-eeEEe
Q psy4754 166 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----NDYTINVWDSLKCC-RVNHL 240 (304)
Q Consensus 166 p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~----~d~~i~iwd~~~~~-~~~~~ 240 (304)
|++..|++++.|+++ ++||+++++.+..+..+... ....+.|.+++..+++++ .|+.|++||+.+.. ++...
T Consensus 178 pdG~lLatgs~Dg~I--rIwD~rsg~~v~tl~~H~~~-~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 178 LDGSLLCTTSKDKKL--NIIDPRDGTIVSSVEAHASA-KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred CCCCEEEEecCCCEE--EEEECCCCcEEEEEecCCCC-cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 999999999999996 69999998877766554321 234567889888877643 47899999987643 33333
Q ss_pred ec-cccceEEEEEccCCCEEEEeec-CCeeeeccccccchhheee
Q psy4754 241 MG-HENRVSCLQVSPDGTAFSSGSW-DTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 241 ~~-h~~~i~~l~~sp~g~~lasgs~-D~~i~~~~~~~~~~~~~~~ 283 (304)
.. +...+....|+|++..|++|+. |+.||+|++.++...+..+
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 32 3345667789999999998875 9999999998766544443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=226.02 Aligned_cols=243 Identities=15% Similarity=0.157 Sum_probs=186.9
Q ss_pred EeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCee--------EeEEeccce
Q psy4754 43 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKE--------VACYKKDSI 113 (304)
Q Consensus 43 tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~--------~~~~~~~~~ 113 (304)
.|+.++.+++|+..+...+..+.+|.++|.+++|+|+ +++|+||+.|++| ++||+..... +..+..+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtI--rIWDi~t~~~~~~~i~~p~~~L~gH-- 124 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTI--RVWEIPHNDESVKEIKDPQCILKGH-- 124 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeE--EEEECCCCCccccccccceEEeecC--
Confidence 3678899999998887788889999999999999996 7899999999995 7899975321 1222222
Q ss_pred eeceeeeEEcCCCCEE-EEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce
Q psy4754 114 LFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 114 ~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~ 192 (304)
...+.++.|+|++..+ ++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.+ ++||+++++.
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~I--rIwD~Rsg~~ 201 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHM--HIIDPRKQEI 201 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEE--EEEECCCCcE
Confidence 2347899999998764 688999999999999887665554 66789999999999999999999985 7999999888
Q ss_pred EEEeecCceee---eeeEEEEcCCCCEEEEEeCCC----cEEEEeCCC-ceeeEEee--ccccceEEEEEccCCCEEEEe
Q psy4754 193 VACYKKDSILF---GATSVDFSVSGRLLFAGYNDY----TINVWDSLK-CCRVNHLM--GHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 193 ~~~~~~~~~~~---~~~~~~~s~~g~~l~sg~~d~----~i~iwd~~~-~~~~~~~~--~h~~~i~~l~~sp~g~~lasg 262 (304)
+..+..+.... .+....|++++.+|++++.++ .|+|||+.+ ..++..+. .+.+.+...-..++|.+|++|
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 77776554211 123345679999999977664 799999884 44454432 334444455556679999999
Q ss_pred ecCCeeeeccccccchhheeeccccCCcee
Q psy4754 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQG 292 (304)
Q Consensus 263 s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~ 292 (304)
+.|++||+|++..++..++.......|..|
T Consensus 282 kGD~tIr~~e~~~~~~~~l~~~~s~~p~~g 311 (568)
T PTZ00420 282 KGDGNCRYYQHSLGSIRKVNEYKSCSPFRS 311 (568)
T ss_pred ECCCeEEEEEccCCcEEeecccccCCCccc
Confidence 999999999998888777776665555445
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=208.68 Aligned_cols=248 Identities=19% Similarity=0.275 Sum_probs=205.7
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...|.+++.+|+.++++||+.|..-.+|+..+++....+.+|++.|+++.|+.||.+|+||..++.+ ++|+..++.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v--~v~~~stg~ 139 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV--LVFKVSTGG 139 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE--EEEEcccCc
Confidence 345569999999999999999999999999999999888899999999999999999999999999985 789998877
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
....+... ...+-=+.|+|-+..|++|+.||.+.+|.+.+....+.+.||+.++++-.|.|+|+.++++..|++| +
T Consensus 140 ~~~~~~~e--~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti--~ 215 (399)
T KOG0296|consen 140 EQWKLDQE--VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI--I 215 (399)
T ss_pred eEEEeecc--cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE--E
Confidence 76655311 1123346799999999999999999999998876677889999999999999999999999999996 6
Q ss_pred EeeecCCceEEEeecCcee-------------------------------------e---------------eeeEEEEc
Q psy4754 184 LFDLRADKEVACYKKDSIL-------------------------------------F---------------GATSVDFS 211 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~-------------------------------------~---------------~~~~~~~s 211 (304)
+||+.+++++......... . .+-++.++
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 8999998877665411000 0 01123344
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 212 ~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
..=++.|+|+-||+|.|||.... .+++...|...|..+.|-+ ..+|+++..|+.||.||.+.+.+.
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAAS-TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccchhhcccccceEEEEecccc-hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 45567889999999999998775 4666778999999999998 789999999999999999887743
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=224.79 Aligned_cols=245 Identities=15% Similarity=0.187 Sum_probs=184.0
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCce--------eeeeecCCcCcEEEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCC--------RVNHLMGHENRVSCL 74 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~--------~~~~~~~h~~~V~~l 74 (304)
+.|++|+..+...+..+ ..|...|.+++|+|+ +.+||||+.||+|+|||+.++. ++..+.+|...|.++
T Consensus 54 gvI~L~~~~r~~~v~~L--~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKL--KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred eEEEeeecCCCceEEEE--cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 56888888776554433 345556999999997 7899999999999999987532 234578899999999
Q ss_pred EECCCCCe-EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc
Q psy4754 75 QVSPDGTA-FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 75 ~~s~d~~~-l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
+|+|++.. |+|++.|+++ ++||+.+.+....+... ..+.++.|+++|.+|++++.|+.|++||+++++.+.++.
T Consensus 132 af~P~g~~iLaSgS~DgtI--rIWDl~tg~~~~~i~~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFV--NIWDIENEKRAFQINMP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EECCCCCeEEEEEeCCCeE--EEEECCCCcEEEEEecC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99998875 5799999995 78999988766555432 246799999999999999999999999999988888888
Q ss_pred CcccceeE-----EEEcCCCcEEEEeecCCc--eEEEEeeecC-CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 154 GHENRVSC-----LQVSPDGTAFSSGSWDTT--LRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 154 ~h~~~v~~-----v~~sp~~~~las~s~d~~--i~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
+|.+.+.. ..|++++..+++++.|+. -.+++||++. .+.+.....+.....+...-..++|.++++|..|++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 99876543 335689889998887751 1257999985 444544433322111122223566999999999999
Q ss_pred EEEEeCCCceeeEEeec--cccceEEEEEccCC
Q psy4754 226 INVWDSLKCCRVNHLMG--HENRVSCLQVSPDG 256 (304)
Q Consensus 226 i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g 256 (304)
|++|++..+. +..+.. +..++.+++|.|.-
T Consensus 287 Ir~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 287 CRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 9999987653 333322 66789999999973
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=230.27 Aligned_cols=243 Identities=21% Similarity=0.277 Sum_probs=194.4
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC----------------------------------------------
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK---------------------------------------------- 57 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~---------------------------------------------- 57 (304)
.|..+|-++.|++||+|||+||.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 3445599999999999999999999999999643
Q ss_pred --------------ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEc
Q psy4754 58 --------------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123 (304)
Q Consensus 58 --------------~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s 123 (304)
-+++..+.||.+.|..|+|+. .++|+|+|+|+|+ |||++....++.++..... ++|++|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTV--RLWh~~~~~CL~~F~Hndf---VTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTV--RLWHPGRKECLKVFSHNDF---VTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccE--EeecCCCcceeeEEecCCe---eEEEEec
Confidence 012445679999999999997 4699999999995 8999999999999987654 6899999
Q ss_pred C-CCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEee-----
Q psy4754 124 V-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK----- 197 (304)
Q Consensus 124 ~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~----- 197 (304)
| |.+||++|+=|+.|++|++...+.+. ...-..-|++++|+|||+..+.|+.+|. |++|+.+..+....+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~--C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGY--CRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccE--EEEEEccCCeEEEeeeEeecc
Confidence 8 67799999999999999987655432 3333478999999999999999999998 5799988766544332
Q ss_pred cCcee-eeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCceeeEEeeccc--cceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 198 KDSIL-FGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHE--NRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 198 ~~~~~-~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..... ..|+.+.|.|... .+++.+.|..|+|||..+...+..++|+. ..-....|+.||++|+++|.|..|.+|..
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 11111 1478888887654 46666789999999997777888888753 23345689999999999999999999986
Q ss_pred cc
Q psy4754 274 KN 275 (304)
Q Consensus 274 ~~ 275 (304)
+.
T Consensus 576 ~~ 577 (712)
T KOG0283|consen 576 DS 577 (712)
T ss_pred CC
Confidence 44
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=201.75 Aligned_cols=249 Identities=19% Similarity=0.302 Sum_probs=195.8
Q ss_pred CceeEEeecccc-ceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~-~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
|++||+|+++.. ...++.+ ..+...|.+++|+.||..+++|+-|+.+++||+.+++ ...+..|+++|.++.|-+...
T Consensus 49 D~tVR~wevq~~g~~~~ka~-~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQ-QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN 126 (347)
T ss_pred CCceEEEEEecCCcccchhh-hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC
Confidence 789999999984 4444322 2334449999999999999999999999999999985 455788999999999988665
Q ss_pred --eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC----c
Q psy4754 82 --AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----H 155 (304)
Q Consensus 82 --~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----h 155 (304)
.|+|||||+++ +.||.+..+++..++.... +.+......+++.+..++.|.+|+++.... ++.. -
T Consensus 127 ~~cl~TGSWDKTl--KfWD~R~~~pv~t~~LPeR-----vYa~Dv~~pm~vVata~r~i~vynL~n~~t--e~k~~~SpL 197 (347)
T KOG0647|consen 127 YQCLVTGSWDKTL--KFWDTRSSNPVATLQLPER-----VYAADVLYPMAVVATAERHIAVYNLENPPT--EFKRIESPL 197 (347)
T ss_pred cceeEecccccce--eecccCCCCeeeeeeccce-----eeehhccCceeEEEecCCcEEEEEcCCCcc--hhhhhcCcc
Confidence 89999999996 6899999888877665432 233344456888899999999999865322 2222 2
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce---EEEeec----CceeeeeeEEEEcCCCCEEEEEeCCCcEEE
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYKK----DSILFGATSVDFSVSGRLLFAGYNDYTINV 228 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~---~~~~~~----~~~~~~~~~~~~s~~g~~l~sg~~d~~i~i 228 (304)
+..+.||+..+|...+|.||.+|.+-|.-.|-...+. +.+++. ..-...|++++|+|--..|+++++||+..+
T Consensus 198 k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 198 KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF 277 (347)
T ss_pred cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEE
Confidence 3458899999999889999999997655555432232 333332 111456899999999999999999999999
Q ss_pred EeCCCceeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
||.....++.+...|.++|+|.+|+.+|.++|-+
T Consensus 278 WDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 278 WDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9998888899999999999999999999999865
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=202.97 Aligned_cols=245 Identities=18% Similarity=0.251 Sum_probs=199.1
Q ss_pred EeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC--eEEEEeCCCceEE
Q psy4754 17 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRC 94 (304)
Q Consensus 17 ~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~--~l~sgs~D~~i~~ 94 (304)
.+.|..+.|..++++++. +|.++|+||+|.+|+|||+.+...+..+..|.+.|++|.|.++-. +|+||+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i-- 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI-- 109 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE--
Confidence 456666777777999997 589999999999999999999988888999999999999998764 99999999996
Q ss_pred EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-cCcccceeEEEEcCCCcEEEE
Q psy4754 95 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSS 173 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las 173 (304)
.+|+......+..++.+.. .++.++++|.+++.++.+.|+.++.||+.+++.-..+ ..+. ...|.|+|.|.+|+.
T Consensus 110 ~iw~~~~W~~~~slK~H~~--~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKG--QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeeeeccccc--ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEE
Confidence 7899999988888887654 3789999999999999999999999998766532221 2232 344899999999999
Q ss_pred eecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEE-
Q psy4754 174 GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV- 252 (304)
Q Consensus 174 ~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~- 252 (304)
++.++. -+|.+++.+.+....... .+.++.| -++.+|++|.+++.|++||.....++..+.+|..+|..+.+
T Consensus 186 ~~~~~i---~i~q~d~A~v~~~i~~~~---r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 186 SGRNKI---DIYQLDNASVFREIENPK---RILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASY 258 (362)
T ss_pred EeccEE---EEEecccHhHhhhhhccc---cceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEE
Confidence 887773 578887766544332221 1233333 35678889999999999999988899999999999999984
Q ss_pred -ccCCCEEEEeecCCeeeecccccc
Q psy4754 253 -SPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 253 -sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
.|++.+|+|+|.||.|++|+.+-.
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 567899999999999999987443
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=198.89 Aligned_cols=235 Identities=22% Similarity=0.258 Sum_probs=196.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee--eecCCcCcEEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
..+.+++|..+|..|++|+.|+++++|++....... ..++|.+.|-.++|+|. ...+++++.|+++ ++||++..+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i--r~wd~r~~k 98 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI--RIWDIRSGK 98 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceE--EEEEeccCc
Confidence 348999999999999999999999999998775443 34789999999999984 5689999999995 799999999
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
+.......... ..+.++|++++++.++.|..|.+.|.++.+...+. .....+..++|+-++..|...+..|+|.
T Consensus 99 ~~~~i~~~~en---i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~-- 172 (313)
T KOG1407|consen 99 CTARIETKGEN---INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVE-- 172 (313)
T ss_pred EEEEeeccCcc---eEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEecCCceEE--
Confidence 88776554332 35789999999999999999999999887655443 3446678888887776666556677865
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
+......+++..++++. .++.++.|+|+|+|+|+|+.|-.+.+||+....+++.+..|.-+|..|.||-||++||+||
T Consensus 173 ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 44555677787777775 4678999999999999999999999999999889999999999999999999999999999
Q ss_pred cCCeeeec
Q psy4754 264 WDTTLRDE 271 (304)
Q Consensus 264 ~D~~i~~~ 271 (304)
+|..|.+=
T Consensus 251 EDh~IDIA 258 (313)
T KOG1407|consen 251 EDHFIDIA 258 (313)
T ss_pred ccceEEeE
Confidence 99998643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=219.13 Aligned_cols=224 Identities=19% Similarity=0.187 Sum_probs=176.8
Q ss_pred cccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-------eeeeeecCCcCcEEEEEECCCC-CeEEEEeCCCceEEE
Q psy4754 25 ILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC-------CRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCR 95 (304)
Q Consensus 25 ~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~ 95 (304)
|...|.+++|+| ++.+|++|+.||+|++||+.++ +.+..+.+|...|.+++|+|++ ++|+||+.|++| +
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV--r 151 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV--N 151 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE--E
Confidence 344599999999 8889999999999999998764 3466788999999999999985 699999999995 7
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc-eeEEEEcCCCcEEEEe
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-VSCLQVSPDGTAFSSG 174 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~las~ 174 (304)
+||+.+.+.+..+..+. ..+.+++|+|++.++++++.|+.|++||+++++.+.++.+|... +..+.|.|++..++++
T Consensus 152 IWDl~tg~~~~~l~~h~--~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHS--DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEECCCCeEEEEEcCCC--CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 99999887776665433 24789999999999999999999999999998888888888765 3467788887777765
Q ss_pred e----cCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCceeeEEeec-cccce
Q psy4754 175 S----WDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMG-HENRV 247 (304)
Q Consensus 175 s----~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~~~~~~~-h~~~i 247 (304)
+ .|+.+ ++||+++... +.....+. ...+....|++++++|++|+ .|+.|++||+.++..+..... +..++
T Consensus 230 G~s~s~Dr~V--klWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 230 GCSKSQQRQI--MLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred ecCCCCCCeE--EEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 4 36775 6999987543 32222121 12344567899999998877 599999999998877665433 55678
Q ss_pred EEEEEccC
Q psy4754 248 SCLQVSPD 255 (304)
Q Consensus 248 ~~l~~sp~ 255 (304)
..++|.|.
T Consensus 307 ~g~~~~pk 314 (493)
T PTZ00421 307 KGLCMMPK 314 (493)
T ss_pred cceEeccc
Confidence 88999885
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=188.96 Aligned_cols=245 Identities=23% Similarity=0.313 Sum_probs=193.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---------------eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKC---------------CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---------------~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~ 93 (304)
|.+++|+|.|.+.+.|+...+.+|.....- -..+..+.|.+.|.|.+|+|+|++|++||.|++|+
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 789999999999999999999999874211 11233457899999999999999999999999988
Q ss_pred EEEeeeCCCeeE---eEEeccceeeceeeeEEcC----CCCEEEEEeC-CCeEEEecCCccccceeccCcccceeEEEEc
Q psy4754 94 CRLFDLRADKEV---ACYKKDSILFGATSVDFSV----SGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHENRVSCLQVS 165 (304)
Q Consensus 94 ~~~wd~~~~~~~---~~~~~~~~~~~~~~~~~s~----~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~s 165 (304)
+.-++..+-+.. -.+..+. ..+..++|-. .+..+++++. |-.|++=|-.+++.+.-+.+|++.|.++. +
T Consensus 115 ~l~fn~dt~~~~g~dle~nmhd--gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-s 191 (350)
T KOG0641|consen 115 VLPFNADTCNATGHDLEFNMHD--GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-S 191 (350)
T ss_pred EEecccccccccCcceeeeecC--CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-E
Confidence 765655433221 1112211 1245666643 3456676543 66777778888888888999999998874 3
Q ss_pred CCCcEEEEeecCCceEEEEeeecCCceEEEeecCce-----eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 166 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-----LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 166 p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
=++-.|++||+|++| +.||++-..++.++..... ...|.+++..|.|++|++|..|...-+||+..+.++..+
T Consensus 192 wn~~m~~sgsqdkti--rfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 192 WNGAMFASGSQDKTI--RFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred ecCcEEEccCCCceE--EEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence 467799999999996 7999998877766532211 134788999999999999999999999999999999999
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
..|...|.|+.|||...++.++|.|..||+-|++.++.
T Consensus 270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred CCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 99999999999999999999999999999998876653
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=192.40 Aligned_cols=253 Identities=18% Similarity=0.234 Sum_probs=209.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
-|+++++|++.....+.......+...|-.+.|+|.. ..+++++.|.+|++||...++++.....-.+.+ -+.|+|+|
T Consensus 40 ~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g 118 (313)
T KOG1407|consen 40 FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDG 118 (313)
T ss_pred cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCC
Confidence 4789999999998655444444555558889998764 589999999999999999998887776555555 47999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
++++.++.|..| ...|.+..+.....+... -+.-+.|+.++++|+....-|.|.|-.-..-+++.++..|+....
T Consensus 119 ~~~~~~~kdD~i--t~id~r~~~~~~~~~~~~---e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi 193 (313)
T KOG1407|consen 119 EYIAVGNKDDRI--TFIDARTYKIVNEEQFKF---EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI 193 (313)
T ss_pred CEEEEecCcccE--EEEEecccceeehhcccc---eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE
Confidence 999999998885 578887766655444322 235677888888888777779999988777788999999999999
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
|+.|+|+|++||+|+.|..+ .+||+.+.-++.++.... .+|..+.||-+|++||+|++|.-|-|=++++|.++.++
T Consensus 194 cI~f~p~GryfA~GsADAlv--SLWD~~ELiC~R~isRld--wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALV--SLWDVDELICERCISRLD--WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred EEEECCCCceEeecccccee--eccChhHhhhheeecccc--CceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 99999999999999999985 699999877777776554 57899999999999999999999999999999999888
Q ss_pred eccccceEEEEEccCCCEEEEeecC
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
. ++++...|+|+|...+||-+..|
T Consensus 270 ~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 270 P-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred e-ccCCceeEEecCCCceeeEEecC
Confidence 6 88999999999999999876654
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=208.55 Aligned_cols=257 Identities=20% Similarity=0.257 Sum_probs=201.5
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT- 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~- 81 (304)
..+|.||+..+-.....+ ......++++.|..||++||+|+..|.|++||..+...++.+.+|..+|..+.|+|+++
T Consensus 47 S~rvqly~~~~~~~~k~~--srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t 124 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTF--SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNT 124 (487)
T ss_pred ccEEEEEecchhhhhhhH--HhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCe
Confidence 456888888876443211 12223489999999999999999999999999777667888999999999999999655
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCcc-ccceeccCcccce
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKC-CRVNHLMGHENRV 159 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v 159 (304)
.|++|+.|+.+ ++||+.+.... +....+..-+.+.+++|.+. .+++|+.||.|++||++.. ..+.+ ..|..+|
T Consensus 125 ~l~s~sDd~v~--k~~d~s~a~v~--~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pV 199 (487)
T KOG0310|consen 125 MLVSGSDDKVV--KYWDLSTAYVQ--AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPV 199 (487)
T ss_pred EEEecCCCceE--EEEEcCCcEEE--EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCce
Confidence 67777777764 78999887643 23323334467888888755 7889999999999999876 33444 4688899
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
..|.+-|.|..+|+++... +++||+.++..+.+.... +...|+|+.+..++..|++|+-|+.+++||..+-+.++.
T Consensus 200 e~vl~lpsgs~iasAgGn~---vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 200 ESVLALPSGSLIASAGGNS---VKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred eeEEEcCCCCEEEEcCCCe---EEEEEecCCceehhhhhc-ccceEEEEEeecCCceEeecccccceEEEEccceEEEEe
Confidence 9999999999999998554 479999866544332221 224689999999999999999999999999877776666
Q ss_pred eeccccceEEEEEccCCCEEEEeecCCeeeec
Q psy4754 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 240 ~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~ 271 (304)
+. ..++|.+++++|+++.++.|-.|+.+-.-
T Consensus 276 ~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 276 WK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ee-cccceeeEEecCCCceEEEecccceeeee
Confidence 54 67899999999999999999999887543
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=211.44 Aligned_cols=255 Identities=18% Similarity=0.235 Sum_probs=206.2
Q ss_pred ccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 22 KDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 22 ~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
...|..+|.|++=+|.. ..+++|+.||.|+|||+...+++.++.+|.+.|..|++.. +.++++|.|++++ .|.+.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK--~wk~~ 137 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK--QWKID 137 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee--eeecc
Confidence 35677789999999987 7899999999999999999999999999999999999986 7899999999975 56654
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeecCCc
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTT 179 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~ 179 (304)
. .+.+.+-.+... ..+..+..+..+++++ ..|.|||.....++.++.--.+.|.++.|+|-.+ .|++|+.|++
T Consensus 138 ~-~p~~tilg~s~~---~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 138 G-PPLHTILGKSVY---LGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred C-Ccceeeeccccc---cccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 3 255555444433 3445555566777775 4799999888888888887778999999999764 6778888999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc-eeeEEeeccccceEEEEEccCCCE
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTA 258 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~ 258 (304)
| .+||++..+++....... ..+.++|+|.+-.+++|++|..++.||+... .++..+++|...|.+++|||.|+.
T Consensus 212 I--vLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 212 I--VLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred e--EEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 6 599999998876553322 3478999997777888999999999997653 356778899999999999999999
Q ss_pred EEEeecCCeeeeccccccchhheeeccccCCceeEEEEE
Q psy4754 259 FSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYF 297 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (304)
|+|||.|++||++..+.+- ||.+-+.++|+-+|
T Consensus 287 fvsgsyDksIRIf~~~~~~------SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGH------SRDIYHTKRMQHVF 319 (433)
T ss_pred hccccccceEEEeecCCCc------chhhhhHhhhheee
Confidence 9999999999999876665 77776766665554
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=211.54 Aligned_cols=277 Identities=20% Similarity=0.310 Sum_probs=210.7
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCE-EEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 84 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~-l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~ 84 (304)
++.|+-.+.-+++ .....|++++|+|..++ +|.. ..-.+.||+..+....+++.-.++-|.++.|-.||++|+
T Consensus 11 ~~~w~~~~~~~~~-----ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 11 IRYWRQETFPPVH-----KEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred chhhhhhcccccc-----cccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEE
Confidence 5667666653322 22334999999997763 3333 334799999998888888877889999999999999999
Q ss_pred EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceeccCcccceeEEE
Q psy4754 85 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 163 (304)
Q Consensus 85 sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~ 163 (304)
.|...|. ++++|..+...++.+..+. .++..+.|+|.++ .+++|++|+.+++||+.+.....++.+|+++|.|.+
T Consensus 85 aGD~sG~--V~vfD~k~r~iLR~~~ah~--apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGH--VKVFDMKSRVILRQLYAHQ--APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCc--EEEeccccHHHHHHHhhcc--CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 9977777 4789966544555555443 3566788988654 677799999999999988776668899999999999
Q ss_pred EcCCC-cEEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE-e
Q psy4754 164 VSPDG-TAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-L 240 (304)
Q Consensus 164 ~sp~~-~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~-~ 240 (304)
++|.. ..++|||.|+.| ++||.+.. ..+..+..+ .++.++.+-|.|..+++++ ...|+|||+.+|..+.. +
T Consensus 161 ~~~~~~hivvtGsYDg~v--rl~DtR~~~~~v~elnhg---~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKV--RLWDTRSLTSRVVELNHG---CPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCCeEEEecCCCceE--EEEEeccCCceeEEecCC---CceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh
Confidence 99965 478899999996 79999987 455555443 4678899999999999986 46899999986655544 4
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (304)
..|...|+||++..+++.|.|||.|+.+++++.. .| -..++-..|..=+-++++|+.|
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t-~~---Kvv~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT-NY---KVVHSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEcc-ce---EEEEeeecccceeeEEecCCCc
Confidence 4499999999999999999999999999999842 22 2334444444446666666554
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=215.94 Aligned_cols=176 Identities=20% Similarity=0.240 Sum_probs=146.0
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 83 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 83 (304)
..|.+||+.+++....+........++|+.-+++...||.|..||.|+||+....+.+-++.+|+..|+++.|...|..|
T Consensus 43 E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 43 EQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred ccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceE
Confidence 45899999999433222222222458999988999999999999999999999888888899999999999999999999
Q ss_pred EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEE
Q psy4754 84 SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 163 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~ 163 (304)
+|||.|+.| .+||+-.+.-+..++.|. ..++..-|..+..++++.+.|++|++||+.+..++.+...|++.+++++
T Consensus 123 aSGskDt~I--IvwDlV~E~Gl~rL~GHk--d~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 123 ASGSKDTDI--IVWDLVGEEGLFRLRGHK--DSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred eecCCCccE--EEEEeccceeeEEeecch--HHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 999999996 589998766665555533 3566777888788999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEeecCCceEEEEeee
Q psy4754 164 VSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 164 ~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
+.+ +.+++++.|+.+ ++|++
T Consensus 199 ~~~--~~lvt~~~dse~--~v~~L 218 (888)
T KOG0306|consen 199 LDE--KLLVTAGTDSEL--KVWEL 218 (888)
T ss_pred Eec--ceEEEEecCCce--EEEEe
Confidence 987 577777888876 46766
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=218.25 Aligned_cols=243 Identities=26% Similarity=0.350 Sum_probs=209.1
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
.+.+.+..|. ..++++++.|.++++||..++..+.. +.+|.+.|+++++..-+..|++|+.|+++ ++||..++.+
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~--rvWd~~sg~C 283 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTE--RVWDCSTGEC 283 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcE--EeEecCCCcE
Confidence 3447888887 56788999999999999999988887 99999999999998878899999999995 7899999999
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
...+..+.. .+.+ +......+++|+.|.+|++|++.++..+..+.+|.++|.+|.++ +..+++|+.|++| ++
T Consensus 284 ~~~l~gh~s--tv~~--~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v--~V 355 (537)
T KOG0274|consen 284 THSLQGHTS--SVRC--LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV--KV 355 (537)
T ss_pred EEEecCCCc--eEEE--EEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE--EE
Confidence 988876543 2233 34456678889999999999999999999988999999999997 6799999999985 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc-eeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
||..+.+.+..+.++. ..|.++.+.+. +.+++|+.|++|++||+.+. +++.++.+|.+-+..+.+ .+++|++++
T Consensus 356 W~~~~~~cl~sl~gH~--~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHT--GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred EEhhhceeeeeecCCc--ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence 9999999998888765 46788877666 89999999999999999999 899999999999877655 678999999
Q ss_pred cCCeeeeccccccchhheeecc
Q psy4754 264 WDTTLRDEESKNRYMQYLLRSR 285 (304)
Q Consensus 264 ~D~~i~~~~~~~~~~~~~~~~~ 285 (304)
.|++|++||...+......+++
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred ccccEEEeecccCceeeeeccC
Confidence 9999999998777766666665
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=192.80 Aligned_cols=250 Identities=20% Similarity=0.340 Sum_probs=196.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|+++|+||...+.....+. +.+.+.+++|.++ ..+++|+.||.|+.+|+++++... +..|..+|+|+..++-...
T Consensus 34 DgslrlYdv~~~~l~~~~~---~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~ 108 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFK---HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGC 108 (323)
T ss_pred cCcEEEEeccchhhhhhee---cCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCe
Confidence 7899999999986544333 3456899999874 577899999999999999876443 5679999999999998889
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec--cCccccee
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVS 160 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~ 160 (304)
+++||||++| ++||.+.......+.... .+-+ .+..++.|+.|+.+..|.+||+++.....+. ..-+..+.
T Consensus 109 vIsgsWD~~i--k~wD~R~~~~~~~~d~~k---kVy~--~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR 181 (323)
T KOG1036|consen 109 VISGSWDKTI--KFWDPRNKVVVGTFDQGK---KVYC--MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTR 181 (323)
T ss_pred EEEcccCccE--EEEeccccccccccccCc---eEEE--EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEE
Confidence 9999999996 689998754444333222 2223 3455788999999999999999876543322 34556799
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCC--ce---EEEee----cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRAD--KE---VACYK----KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~--~~---~~~~~----~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
||++-|+++-++.+|-||.+.+-.+|.... +. ..+++ ......+|++++|+|--..++||+.||.|.+||+
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 999999999999999999987655565421 11 22221 1123468999999999999999999999999999
Q ss_pred CCceeeEEeeccccceEEEEEccCCCEEEEeec
Q psy4754 232 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264 (304)
Q Consensus 232 ~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~ 264 (304)
.+.+++..+..-+..|.+++|+.||..||.++.
T Consensus 262 ~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 262 FNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999988877788999999999999999873
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=187.63 Aligned_cols=251 Identities=20% Similarity=0.218 Sum_probs=203.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCe
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADK 103 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~ 103 (304)
...|.++.|+++|..+++++.|.+++|||..++.+.+++..++-.|..+.|....+.++.++. |.+| |.-++.+.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI--ryLsl~dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI--RYLSLHDNK 91 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce--EEEEeecCc
Confidence 345999999999999999999999999999999999999888888999999887777776665 8885 678998888
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
-++.+..|.. .++++..+|-++.+++++.|++|++||++...+..-+. ...-...+|.|+|-.||.+..... |+
T Consensus 92 ylRYF~GH~~--~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~--Ik 165 (311)
T KOG1446|consen 92 YLRYFPGHKK--RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFALANGSEL--IK 165 (311)
T ss_pred eEEEcCCCCc--eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEEecCCCe--EE
Confidence 9998887654 46889999999999999999999999998655443322 223345789999999999887765 57
Q ss_pred EeeecCCc--eEEEeecC-ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccce---EEEEEccCCC
Q psy4754 184 LFDLRADK--EVACYKKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV---SCLQVSPDGT 257 (304)
Q Consensus 184 ~~d~~~~~--~~~~~~~~-~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i---~~l~~sp~g~ 257 (304)
+||+|... +..++... ......+.+.|||||++|+.+...+.+++.|.-+|..+.++.+|...- ....|+||++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 99998752 34444322 112345789999999999999999999999999999999998876432 5678999999
Q ss_pred EEEEeecCCeeeeccccccchhheeec
Q psy4754 258 AFSSGSWDTTLRDEESKNRYMQYLLRS 284 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~~~~~~~~ 284 (304)
++++|+.|++|-+|+...+..-..++.
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999999999999999877664444443
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=202.54 Aligned_cols=268 Identities=22% Similarity=0.334 Sum_probs=210.3
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-----------------eee-cCCcCcEEEEEECCCCCeEEEE
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----------------NHL-MGHENRVSCLQVSPDGTAFSSG 86 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-----------------~~~-~~h~~~V~~l~~s~d~~~l~sg 86 (304)
|..++.+++++|+.++.++++.||+|.-|++.++... +.- ++|...+.+++.++||++|++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 4455899999999999999999999999998765421 111 2788899999999999999999
Q ss_pred eCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC
Q psy4754 87 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 166 (304)
Q Consensus 87 s~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp 166 (304)
+.|..+ .+|+..+.+.+.+++.+.. .+.+++|......+++++.|+.|++|++.....+.++.+|++.|..+....
T Consensus 221 g~d~~v--~Iw~~~t~ehv~~~~ghr~--~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 221 GRDRHV--QIWDCDTLEHVKVFKGHRG--AVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred CCCceE--EEecCcccchhhccccccc--ceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence 999985 6899999988887766543 567889998888999999999999999998888999999999999999887
Q ss_pred CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-c--
Q psy4754 167 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-H-- 243 (304)
Q Consensus 167 ~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h-- 243 (304)
-++.+..|+.|.++ ++|++....++ .+..+. ..+-+++|-. ...+++|+.+|.|.+|++.+..++.+..- |
T Consensus 297 reR~vtVGgrDrT~--rlwKi~eesql-ifrg~~--~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 297 RERCVTVGGRDRTV--RLWKIPEESQL-IFRGGE--GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred ccceEEecccccee--EEEecccccee-eeeCCC--CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 77777778899996 79999655443 344332 1335555544 45678999999999999988777665432 2
Q ss_pred ---------ccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCc
Q psy4754 244 ---------ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 244 ---------~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (304)
+.+|++|+..|...++||||.++.||+|...+++.+.+.--.+--.-+=..|.|+++|.
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 23899999999999999999999999999888875444333332222235566666654
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=205.85 Aligned_cols=253 Identities=22% Similarity=0.271 Sum_probs=197.6
Q ss_pred CceeEEeeccccceEeeeecccc-ccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI-LFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~-~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
|+++|+|+-..++-+.....+.+ ++-...+++.+ ++..+++|+.|+.+.+|.....+++..+++|+..|.+++...++
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~ 113 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG 113 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC
Confidence 78999999987765443222221 12123366664 45568899999999999999999999999999999999998888
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
. ++|||||.+. ++|-...-. ...+.| ..++-.+..-|++ .+++|+.|.+|++|.- ++.+.++.+|++.|.
T Consensus 114 ~-~iSgSWD~Ta--kvW~~~~l~--~~l~gH--~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR 183 (745)
T KOG0301|consen 114 T-LISGSWDSTA--KVWRIGELV--YSLQGH--TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR 183 (745)
T ss_pred c-eEecccccce--EEecchhhh--cccCCc--chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhhee
Confidence 7 9999999996 578765322 223333 2345567666766 7899999999999975 567889999999999
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
.+++-|+. .|++|+.|+.| ++|++ +++.+..+.++. ..+.++....++..++++++|++++||+.. +++..+
T Consensus 184 gL~vl~~~-~flScsNDg~I--r~w~~-~ge~l~~~~ght--n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 184 GLAVLDDS-HFLSCSNDGSI--RLWDL-DGEVLLEMHGHT--NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred eeEEecCC-CeEeecCCceE--EEEec-cCceeeeeeccc--eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 99998765 69999999996 69999 556777666665 456888888899999999999999999876 456666
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.-....|+++.+-++|.. ++|+.|+.||+|...
T Consensus 256 ~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred ecCccceEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 545569999999988765 567779999999654
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=214.75 Aligned_cols=266 Identities=18% Similarity=0.186 Sum_probs=199.9
Q ss_pred CCceeEEeecccc----------ceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC--------------
Q psy4754 2 GKNHCRLFDLRAD----------KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-------------- 57 (304)
Q Consensus 2 ~~~~v~~wd~~~~----------~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-------------- 57 (304)
+|+.++||+...= .+.+.++...|...|+|+.|+|||++||+||.|..|.||.-..
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 4677889976541 0122333455666699999999999999999999999999662
Q ss_pred ----ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe
Q psy4754 58 ----CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 58 ----~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~ 133 (304)
-+....+++|...|..++|+|++.+|+|+|.|++| .+||..+...+..++.+.. .+..+.|.|-|++|++-+
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV--iiwn~~tF~~~~vl~~H~s--~VKGvs~DP~Gky~ASqs 190 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV--IIWNAKTFELLKVLRGHQS--LVKGVSWDPIGKYFASQS 190 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceE--EEEccccceeeeeeecccc--cccceEECCccCeeeeec
Confidence 12456788999999999999999999999999996 6899988877777766543 356789999999999999
Q ss_pred CCCeEEEecCCccccceeccCcc------cceeEEEEcCCCcEEEEeec--CCceEEEEeeecCCceEEEeecCceeeee
Q psy4754 134 NDYTINVWDSLKCCRVNHLMGHE------NRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGA 205 (304)
Q Consensus 134 ~dg~i~iwd~~~~~~~~~~~~h~------~~v~~v~~sp~~~~las~s~--d~~i~i~~~d~~~~~~~~~~~~~~~~~~~ 205 (304)
.|++|++|++.+......+.++. .....+.|||||++|++... .+.-.+.+.+-.+-+.-..+-+|. .++
T Consensus 191 dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~--~p~ 268 (942)
T KOG0973|consen 191 DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS--APV 268 (942)
T ss_pred CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC--Cce
Confidence 99999999976655444433332 34678999999999998753 111112355544444334444444 367
Q ss_pred eEEEEcCC------C-------C----EEEEEeCCCcEEEEeCCCceeeEEeec-cccceEEEEEccCCCEEEEeecCCe
Q psy4754 206 TSVDFSVS------G-------R----LLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 206 ~~~~~s~~------g-------~----~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
..+.|+|. . + .+|+|+.|++|.||.....+++..... -...|..++|+|||..|..+|.|++
T Consensus 269 evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 269 EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 88889873 1 1 678899999999999877666643322 3578999999999999999999999
Q ss_pred eeeccc
Q psy4754 268 LRDEES 273 (304)
Q Consensus 268 i~~~~~ 273 (304)
|.+...
T Consensus 349 V~~i~F 354 (942)
T KOG0973|consen 349 VALIHF 354 (942)
T ss_pred EEEEEc
Confidence 986654
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=184.83 Aligned_cols=240 Identities=25% Similarity=0.318 Sum_probs=188.2
Q ss_pred eeEEEEcC--CCCEEEEee------CCCcEEEEeCCCceeeeeec--CCcCcEEEEEECCCC-CeEEEEeCCCceEEEEe
Q psy4754 29 ATSVDFSV--SGRLLFAGY------NDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 29 i~~~~~~~--~g~~l~tg~------~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~w 97 (304)
=.++.||| ++++.++++ -.|++.|-++.....+..+. .-.+.+..++|++.. +.+++++.||++ ++|
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSL--rl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSL--RLF 88 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceE--EEe
Confidence 47889998 455444332 36889999986444333322 346889999999975 478899999996 789
Q ss_pred eeC-CCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEe
Q psy4754 98 DLR-ADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSG 174 (304)
Q Consensus 98 d~~-~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~ 174 (304)
|.. ...++.+++++.. -+-++.+++. ...+++++-|++|++|+......+.++.||..-|...+|+| ..+.|+++
T Consensus 89 d~~~~s~Pi~~~kEH~~--EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 89 DLTMPSKPIHKFKEHKR--EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred ccCCCCcchhHHHhhhh--heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 974 3457777776543 3457778764 44677889999999999888888999999999999999999 45799999
Q ss_pred ecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCC-ceeeEEeeccccceEEEEE
Q psy4754 175 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 175 s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~l~~ 252 (304)
|.|++. ++||++.......+..+. ..+.++.|+.- ...+++|+.|+.|++||+.. .+++..+.+|.-.|..|+|
T Consensus 167 Sgd~~l--~lwdvr~~gk~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 167 SGDGTL--RLWDVRSPGKFMSIEAHN--SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred cCCceE--EEEEecCCCceeEEEecc--ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence 999995 699998765444466665 35688899854 56788899999999999865 3468889999999999999
Q ss_pred ccC-CCEEEEeecCCeeeecccccc
Q psy4754 253 SPD-GTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 253 sp~-g~~lasgs~D~~i~~~~~~~~ 276 (304)
||. ...|||+|.|.++|+|++..+
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred CcchhhHhhhccccceEEecccccc
Confidence 995 468999999999999987643
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=206.54 Aligned_cols=292 Identities=24% Similarity=0.339 Sum_probs=236.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d 79 (304)
.+++|-++|+..++.+..|+.+ -..|++++|..||. .+|+|...|.+-+||+++...+..++ .|.+.|....|-|.
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ 299 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG 299 (910)
T ss_pred cCceEEEEEcccCcEEEEEEcc--ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence 4789999999999999998865 23599999999986 67888888999999999887777665 79899999999998
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCe--e-------------EeEE----------ecc-----------------------
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADK--E-------------VACY----------KKD----------------------- 111 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~--~-------------~~~~----------~~~----------------------- 111 (304)
.-.|+|++.|..++++++|...+. . ++.+ ..+
T Consensus 300 epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~ 379 (910)
T KOG1539|consen 300 EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK 379 (910)
T ss_pred CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence 889999999999999999922110 0 0000 000
Q ss_pred -----------------c-------------------------------------------------eeeceeeeEEcCC
Q psy4754 112 -----------------S-------------------------------------------------ILFGATSVDFSVS 125 (304)
Q Consensus 112 -----------------~-------------------------------------------------~~~~~~~~~~s~~ 125 (304)
. ....+++++.++.
T Consensus 380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C 459 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC 459 (910)
T ss_pred cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence 0 0011567788899
Q ss_pred CCEEEEEeCCCeEEEecCCccccceec---cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
|++.+.|+..|.|.+|++.++-....+ ..|..+|.+++...-++.+++++.+|.+ ..||..+...+..+....
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil--kfw~f~~k~l~~~l~l~~-- 535 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL--KFWDFKKKVLKKSLRLGS-- 535 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE--EEEecCCcceeeeeccCC--
Confidence 999999999999999999988766666 5899999999998888899999999986 589998766555554332
Q ss_pred eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhhee
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLL 282 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~ 282 (304)
.+..+.++.....++.+.+|-.|+++|..+.+.++.+.||.++|++++|||||+.|++++.|++||.||+..+++-
T Consensus 536 -~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI--- 611 (910)
T KOG1539|consen 536 -SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI--- 611 (910)
T ss_pred -CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee---
Confidence 4567778888899999999999999999999999999999999999999999999999999999999999887732
Q ss_pred eccccCCceeEEEEEecCCccC
Q psy4754 283 RSRITKPTQGLTVYFQDRGRSI 304 (304)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~ 304 (304)
..+--......|-|+|+|+.|
T Consensus 612 -D~~~vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 612 -DGLLVDSPCTSLSFSPNGDFL 632 (910)
T ss_pred -eeEecCCcceeeEECCCCCEE
Confidence 222223446788899999875
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=191.58 Aligned_cols=248 Identities=21% Similarity=0.276 Sum_probs=185.1
Q ss_pred EEEEeCCCcee-----eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC--eeEeEEeccceeeceeeeEE
Q psy4754 50 INVWDSLKCCR-----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDSILFGATSVDF 122 (304)
Q Consensus 50 v~iwd~~~~~~-----~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~--~~~~~~~~~~~~~~~~~~~~ 122 (304)
..-|+...... ...+++|.+.|++++|+.||+.|+|++.|++| ++|+++.- +.-++++.+....+.+.+.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~I--r~w~~~DF~~~eHr~~R~nve~dhpT~V~F 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSI--RLWDVRDFENKEHRCIRQNVEYDHPTRVVF 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceE--EEEecchhhhhhhhHhhccccCCCceEEEE
Confidence 44566554433 23478999999999999999999999999996 78999752 22233333333345688999
Q ss_pred cCCCCEE-EEEeCCCeEEEecCCcccc---------ce---eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecC
Q psy4754 123 SVSGRLL-FAGYNDYTINVWDSLKCCR---------VN---HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 189 (304)
Q Consensus 123 s~~~~~l-~sg~~dg~i~iwd~~~~~~---------~~---~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~ 189 (304)
.||.+-+ ++.....++++|.+.+.+. .. -...|.-.+..+-....+.++++++.|..| .+|+++
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i--~lw~lk- 217 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI--CLWDLK- 217 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcE--EEEecC-
Confidence 9997754 5566778999997644221 11 112466667777777788999999999986 599998
Q ss_pred CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC--------CceeeEEeeccccceEEEEEccCCCEEEE
Q psy4754 190 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--------KCCRVNHLMGHENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~--------~~~~~~~~~~h~~~i~~l~~sp~g~~las 261 (304)
++.+..+.+... .-...+.||+|+++++++-.-.|++|.+- .-.++-+++||...|+.++|||+++.++|
T Consensus 218 Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 218 GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 677777655543 23567899999999999988899999742 23345678999999999999999999999
Q ss_pred eecCCeeeecccccc----chhheeecc-ccCC---ceeEEEEEecCCccC
Q psy4754 262 GSWDTTLRDEESKNR----YMQYLLRSR-ITKP---TQGLTVYFQDRGRSI 304 (304)
Q Consensus 262 gs~D~~i~~~~~~~~----~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 304 (304)
.|.|+++|+||.+-+ .++++++.. +-.+ .++|+|.++|.|++|
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~l 346 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSL 346 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEE
Confidence 999999999987654 456666644 3333 336999999999986
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=190.21 Aligned_cols=260 Identities=23% Similarity=0.347 Sum_probs=212.4
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeC------CC-------------------
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS------LK------------------- 57 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~------~~------------------- 57 (304)
|.|-+||.+++++++..+. .|..+|+++.|++.+.++++++.|++..||.. ..
T Consensus 169 DhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~ 246 (481)
T KOG0300|consen 169 DHTARIWSLESGACLATYT--GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH 246 (481)
T ss_pred ccceeEEeeccccceeeec--ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence 6789999999999987765 44566999999999999999999999999982 00
Q ss_pred -----------c----eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEE
Q psy4754 58 -----------C----CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122 (304)
Q Consensus 58 -----------~----~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (304)
+ .++..+.+|...|.+..|-..|+.++++|||++- .+||+.++..+..+..+.... +.+.-
T Consensus 247 ~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA--nlwDVEtge~v~~LtGHd~EL--tHcst 322 (481)
T KOG0300|consen 247 NRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA--NLWDVETGEVVNILTGHDSEL--THCST 322 (481)
T ss_pred ccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc--eeeeeccCceeccccCcchhc--ccccc
Confidence 0 1344577999999999999999999999999994 799999999888777665433 44567
Q ss_pred cCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc-eEEEeecCc
Q psy4754 123 SVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDS 200 (304)
Q Consensus 123 s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~-~~~~~~~~~ 200 (304)
+|..+++++.+.|-+.++||.+.. ..+..|+||++.|+++.|.-+. .+++||.|.++ ++||+++.+ ++.++....
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTv--KvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTV--KVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceE--EEeeeccccCcceeeecCC
Confidence 899999999999999999998742 2355689999999999998765 68999999996 589999876 366666654
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE-----eeccccceEEEEEccCC--CEEEEeecCCeeeeccc
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-----LMGHENRVSCLQVSPDG--TAFSSGSWDTTLRDEES 273 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~-----~~~h~~~i~~l~~sp~g--~~lasgs~D~~i~~~~~ 273 (304)
+++.++.+-.++.++.-.+.+.|++||+.. .++.. -.+|..-|.|++|+.+. .-|.+++.|+.+.-|..
T Consensus 400 ---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 400 ---PANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ---ccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 568889999999999998889999999753 34433 34799999999998664 45778899999999966
Q ss_pred cc
Q psy4754 274 KN 275 (304)
Q Consensus 274 ~~ 275 (304)
..
T Consensus 476 n~ 477 (481)
T KOG0300|consen 476 NT 477 (481)
T ss_pred cc
Confidence 44
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=208.58 Aligned_cols=249 Identities=23% Similarity=0.324 Sum_probs=203.0
Q ss_pred EEEEc-CCCCEEEEeeCCCcEEEEeCCCc--e----eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 31 SVDFS-VSGRLLFAGYNDYTINVWDSLKC--C----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 31 ~~~~~-~~g~~l~tg~~dg~v~iwd~~~~--~----~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
++..+ |++++|+|||.||.|++|+...- + .+..++.|.+||..+....+++.|+|+|.|-+| ++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV--K~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV--KVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE--EEeecccCc
Confidence 55554 56778999999999999997532 1 356788999999999999999999999999996 689987653
Q ss_pred --eEeEEeccceeeceeeeEE-cCCCCEEEEEeCCCeEEEecCCcccc--c--------eecc-CcccceeEEEEcCCCc
Q psy4754 104 --EVACYKKDSILFGATSVDF-SVSGRLLFAGYNDYTINVWDSLKCCR--V--------NHLM-GHENRVSCLQVSPDGT 169 (304)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~-s~~~~~l~sg~~dg~i~iwd~~~~~~--~--------~~~~-~h~~~v~~v~~sp~~~ 169 (304)
.+.++..|.. =+.++++ -++...+|+|+-|+.|.+||+.++.. + ..+. |+..+|.+++-++.+.
T Consensus 107 ~~c~stir~H~D--YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 107 TFCMSTIRTHKD--YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred chhHhhhhcccc--hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence 3333433322 2467777 67788899999999999999886522 1 2233 8899999999999999
Q ss_pred EEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEE
Q psy4754 170 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 249 (304)
Q Consensus 170 ~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~ 249 (304)
.+++|+.++.+ ++||.++.+.+..+.+|. -+|..+..++||..++++++||+|++||+....++.++..|...|++
T Consensus 185 ~ivsGgtek~l--r~wDprt~~kimkLrGHT--dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 185 IIVSGGTEKDL--RLWDPRTCKKIMKLRGHT--DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred EEEecCcccce--EEeccccccceeeeeccc--cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 99999999985 799999998888777664 46788999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce
Q psy4754 250 LQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ 291 (304)
Q Consensus 250 l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~ 291 (304)
+..+|+=.++.+|+.|+.|..-++.+. .-...+|++.+
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~----~~~tlick~da 298 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNP----AKSTLICKEDA 298 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCc----hhheEeecCCC
Confidence 999999999999999999987776553 22345555544
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=188.44 Aligned_cols=218 Identities=22% Similarity=0.339 Sum_probs=182.7
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-eeeeecCCcCcEEEEEECCCCCe
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
=+-++||.-++-+++.++ |.|-|.+++|+.|..+|+||+.+..+||||++.-+ +...+.+|.+.|+.+-|-...+.
T Consensus 81 ftakvw~a~tgdelhsf~---hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~ 157 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFE---HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC 157 (334)
T ss_pred chhhhhhhhhhhhhhhhh---hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce
Confidence 356899999998877665 34568999999999999999999999999997643 45667899999999999888888
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
++|++.|++| |+||.++++.+..+..+. +++++.++++|+++.++ ..+.|.+||..+...+..+. -+..|.+.
T Consensus 158 iLSSadd~tV--RLWD~rTgt~v~sL~~~s---~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SA 230 (334)
T KOG0278|consen 158 ILSSADDKTV--RLWDHRTGTEVQSLEFNS---PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESA 230 (334)
T ss_pred EEeeccCCce--EEEEeccCcEEEEEecCC---CCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-Cccccccc
Confidence 9999999995 899999999988877654 46899999999876654 56899999998877776644 34678889
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
+++|+...++.|+.|..+ +.||..++..+..+... +..+|.++.|+|+|+..++|++||+|++|....+
T Consensus 231 SL~P~k~~fVaGged~~~--~kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKV--YKFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cccCCCceEEecCcceEE--EEEeccCCceeeecccC-CCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999999875 68999999888776322 3367899999999999999999999999986543
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=199.34 Aligned_cols=266 Identities=21% Similarity=0.272 Sum_probs=203.0
Q ss_pred CCceeEEeeccccc-eEeeeec--cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee------------eeeecC
Q psy4754 2 GKNHCRLFDLRADK-EVACYKK--DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR------------VNHLMG 66 (304)
Q Consensus 2 ~~~~v~~wd~~~~~-~~~~~~~--~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~------------~~~~~~ 66 (304)
.|-+|++||.+.=. -+..|.. ....|.|.+++|++.|..|+..+.....+|+|-...+. +...+|
T Consensus 187 ~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKG 266 (641)
T KOG0772|consen 187 LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKG 266 (641)
T ss_pred ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCC
Confidence 47789999998731 1111211 34456799999999999888888888999999543221 223468
Q ss_pred CcCcEEEEEECCCC-CeEEEEeCCCceEEEEeeeCCC-eeEeEEecc---ceeeceeeeEEcCCCCEEEEEeCCCeEEEe
Q psy4754 67 HENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRAD-KEVACYKKD---SILFGATSVDFSVSGRLLFAGYNDYTINVW 141 (304)
Q Consensus 67 h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~-~~~~~~~~~---~~~~~~~~~~~s~~~~~l~sg~~dg~i~iw 141 (304)
|...++|.+|+|+. +.++|++.|+++ |+||+... .+..+++.. .....++.++|+++++++|+|..||.|.+|
T Consensus 267 Hia~lt~g~whP~~k~~FlT~s~Dgtl--RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNKEEFLTCSYDGTL--RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred ceeeeeccccccCcccceEEecCCCcE--EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 99999999999965 589999999995 78998653 344444322 222357889999999999999999999999
Q ss_pred cCCccccc---eeccCccc--ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCC
Q psy4754 142 DSLKCCRV---NHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGR 215 (304)
Q Consensus 142 d~~~~~~~---~~~~~h~~--~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~ 215 (304)
+....... ..-..|.. .|+||+||+||++|++=|.|.++ ++||++..+. +.+...--..++-+.++|||+.+
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL--KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL--KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce--eeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence 97554322 22357877 89999999999999999999996 5899997653 33332222234457889999999
Q ss_pred EEEEEeC------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeec
Q psy4754 216 LLFAGYN------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 216 ~l~sg~~------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~ 271 (304)
+|++|.+ -+++.+||..+-+.+.++.-....|..+.|+|-=+.|..|+.|+++.++
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 9999854 3679999999888888877678889999999988888888899999865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=187.06 Aligned_cols=263 Identities=14% Similarity=0.160 Sum_probs=192.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
.|++|++||+.+++....+... ..+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+.. +..++|+|++
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~---~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g 84 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG---QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNG 84 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC---CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCC
Confidence 4789999999999876665532 236789999999866 6778899999999998887776655444 4678999999
Q ss_pred CeEEE-EeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC-eEEEecCCccccceeccCcccc
Q psy4754 81 TAFSS-GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 81 ~~l~s-gs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
+.++. ++.|+. +++||+.+.+.+..++... .+..+.|+|++.+++++..++ .+.+||..+........ ....
T Consensus 85 ~~l~~~~~~~~~--l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~ 158 (300)
T TIGR03866 85 KILYIANEDDNL--VTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQR 158 (300)
T ss_pred CEEEEEcCCCCe--EEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCC
Confidence 87654 456777 4789998877665554221 245789999999999888764 56778987765544332 2234
Q ss_pred eeEEEEcCCCcEEE-EeecCCceEEEEeeecCCceEEEeecCc-----eeeeeeEEEEcCCCCEEEE-EeCCCcEEEEeC
Q psy4754 159 VSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDS-----ILFGATSVDFSVSGRLLFA-GYNDYTINVWDS 231 (304)
Q Consensus 159 v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~ 231 (304)
+.+++|+|+++.++ ++..++.+ .+||+++++.+..+.... .......++|+|++++++. ...++.+.+||.
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTV--SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEE--EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 67899999999875 44457775 689999877655443211 0112346889999998655 445678999999
Q ss_pred CCceeeEEeeccccceEEEEEccCCCEEEEe-ecCCeeeeccccccc
Q psy4754 232 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDTTLRDEESKNRY 277 (304)
Q Consensus 232 ~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg-s~D~~i~~~~~~~~~ 277 (304)
.+++.+..+. +...+.+++|+|+|.+|+++ +.+++|++||...+.
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 8877665543 45579999999999999876 468999999987755
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=187.13 Aligned_cols=263 Identities=19% Similarity=0.223 Sum_probs=189.6
Q ss_pred eeEEeeccccceEeeeec---cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc-----------------------
Q psy4754 5 HCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----------------------- 58 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~---~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----------------------- 58 (304)
+.+-|+.+..+-.+.+.. ..|...|++++|+.||++|||++.|++|++|++.+.
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 345566665543322222 234455999999999999999999999999996221
Q ss_pred -------------eeeee-----------------------ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 59 -------------CRVNH-----------------------LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 59 -------------~~~~~-----------------------~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..+.. -+.|.-.|..+-+...+++|+|++.|..| .+|+++ +
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i--~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI--CLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcE--EEEecC-C
Confidence 00100 01244567777777888899999999885 799998 6
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC---c-----cccceeccCcccceeEEEEcCCCcEEEEe
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---K-----CCRVNHLMGHENRVSCLQVSPDGTAFSSG 174 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~---~-----~~~~~~~~~h~~~v~~v~~sp~~~~las~ 174 (304)
+.+..+..+.. .-...++||+|+++++++..-.|++|+.- . -.++.++.||...|..++|+|+.+.++|.
T Consensus 219 q~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 QLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 66655443321 22356799999999999988999999842 1 12456788999999999999999999999
Q ss_pred ecCCceEEEEeeecC----C---ceEEEee--cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-cc
Q psy4754 175 SWDTTLRCRLFDLRA----D---KEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HE 244 (304)
Q Consensus 175 s~d~~i~i~~~d~~~----~---~~~~~~~--~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~ 244 (304)
|.|++. ++||..- + +.+.... .+........++++|.|+.||... ..++++|..++++....+.. |.
T Consensus 297 SkDG~w--riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 297 SKDGKW--RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred ecCCcE--EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhc
Confidence 999995 6887531 1 1111111 111112345899999999988765 56899999888877666644 99
Q ss_pred cceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 245 NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 245 ~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
..|.||+|+|+|+++||++ |+.+|+....++
T Consensus 374 ~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred CceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999999999999999997 788888764343
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=171.79 Aligned_cols=239 Identities=23% Similarity=0.290 Sum_probs=190.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCC--Cceee---eeecCCcCcEEEEEECCC----CCeEEEEeCCCceEEEEee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRV---NHLMGHENRVSCLQVSPD----GTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--~~~~~---~~~~~h~~~V~~l~~s~d----~~~l~sgs~D~~i~~~~wd 98 (304)
+|+|.+|+|+|+++++|+.|.+|++-..+ +++.. ..+..|.+.|+.++|-.+ +..|+|++... .++.+-|
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd-c~iy~td 169 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD-CKIYITD 169 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc-ceEEEee
Confidence 49999999999999999999999997754 33222 135679999999999764 35788877533 2356777
Q ss_pred eCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--c-----ccceeEEEEcCCCcEE
Q psy4754 99 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--H-----ENRVSCLQVSPDGTAF 171 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h-----~~~v~~v~~sp~~~~l 171 (304)
-..++..+.+..+.. ++.+ -++-++-++++|+.|.+|++||++-..++.++.. | ...|.+|+..|.|+++
T Consensus 170 c~~g~~~~a~sghtg--hila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 170 CGRGQGFHALSGHTG--HILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred cCCCCcceeecCCcc--cEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 778887777766542 2322 3667788999999999999999987776655421 1 2468999999999999
Q ss_pred EEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc----eeeEEeeccccce
Q psy4754 172 SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRV 247 (304)
Q Consensus 172 as~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~~~i 247 (304)
++|-.|.+ +.+||++.++.++.+..+. ..+.++.|+|...||++++.|..|++=|+... .++-....|...+
T Consensus 247 ~sg~~dss--c~lydirg~r~iq~f~phs--adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 247 ASGHADSS--CMLYDIRGGRMIQRFHPHS--ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred eeccCCCc--eEEEEeeCCceeeeeCCCc--cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 99999998 5799999999999988776 36789999999999999999999999886531 1222345699999
Q ss_pred EEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 248 SCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 248 ~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
..+.|+|+.--+++.|.|+++.+|.++
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999999999999864
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=192.28 Aligned_cols=251 Identities=20% Similarity=0.257 Sum_probs=193.5
Q ss_pred CceeEEeeccccceE-eeeecc---------------ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC
Q psy4754 3 KNHCRLFDLRADKEV-ACYKKD---------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~-~~~~~~---------------~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~ 66 (304)
+++|--|+..+++.. +.++.+ .|...+.+++.++||+|||+|+.|..|.||+..+.+.++.+.+
T Consensus 163 ~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g 242 (479)
T KOG0299|consen 163 DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG 242 (479)
T ss_pred CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc
Confidence 567888888888643 222221 2233389999999999999999999999999999999999999
Q ss_pred CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc
Q psy4754 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 67 h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 146 (304)
|.+.|.+++|......|+++|.|+++ ++|++.....+..+=.+. ..+..+....-++.+-.|+.|+++++|++...
T Consensus 243 hr~~V~~L~fr~gt~~lys~s~Drsv--kvw~~~~~s~vetlyGHq--d~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee 318 (479)
T KOG0299|consen 243 HRGAVSSLAFRKGTSELYSASADRSV--KVWSIDQLSYVETLYGHQ--DGVLGIDALSRERCVTVGGRDRTVRLWKIPEE 318 (479)
T ss_pred cccceeeeeeecCccceeeeecCCce--EEEehhHhHHHHHHhCCc--cceeeechhcccceEEeccccceeEEEecccc
Confidence 99999999999888899999999996 689987654443322211 12445555555666666779999999998544
Q ss_pred ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc-e---------eeeeeEEEEcCCCCE
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-I---------LFGATSVDFSVSGRL 216 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~---------~~~~~~~~~s~~g~~ 216 (304)
. ...+.+|.+.+-|++|-. ..+|++||.||.| .+|++-..+++.+.+... . ..-+++++..|...+
T Consensus 319 s-qlifrg~~~sidcv~~In-~~HfvsGSdnG~I--aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL 394 (479)
T KOG0299|consen 319 S-QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSI--ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDL 394 (479)
T ss_pred c-eeeeeCCCCCeeeEEEec-ccceeeccCCceE--EEeeecccCceeEeeccccccCCccccccccceeeeEecccCce
Confidence 3 335788999999999974 4589999999996 699998888877654211 1 114789999999999
Q ss_pred EEEEeCCCcEEEEeCCCc----eeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 217 LFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~----~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
+++|+.+|.|++|.+..+ .++..+. -.+.|++|+|+++|+.+++|
T Consensus 395 ~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 395 LASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 999999999999988766 2333333 56899999999999966665
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-25 Score=187.11 Aligned_cols=282 Identities=18% Similarity=0.168 Sum_probs=206.5
Q ss_pred CCceeEEeeccccce---EeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~---~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
|++|+.+|++.++.. ...+.+..+ ..|.|+.|.++|+.+ ||.++|.|.||+..++...+...+|.+.|.+|....
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGDVI-TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred CCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCCEE-eecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence 789999999999843 455555555 559999999998766 999999999999988887777779999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
+|++|- |+.|+.| .+|| ..-+.++..+.....-.+..++ +...-++.|...+.|.-=.+..+.. ....+|.+.
T Consensus 298 ~GtllS-GgKDRki--~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f~-~~v~gh~de 370 (626)
T KOG2106|consen 298 DGTLLS-GGKDRKI--ILWD-DNYRKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGFT-LTVQGHGDE 370 (626)
T ss_pred CccEee-cCccceE--Eecc-ccccccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCce-EEEEecccc
Confidence 997655 9999985 6899 3333333332221111233332 3333378888777776655544332 245789999
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
...++.+|+.+.++||++|+++ ++|+ ..+..-.... ..++.++.|+|.| .+|.|...|...+.|.++...+.
T Consensus 371 lwgla~hps~~q~~T~gqdk~v--~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQDKHV--RLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred eeeEEcCCChhheeeccCcceE--EEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccceeEE
Confidence 9999999999999999999996 6898 3333222221 2356899999999 99999999999999999976666
Q ss_pred EeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCc
Q psy4754 239 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 239 ~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (304)
.... ++++++++|+|+|.+||.||+|..|.++........|-... .+....=-.|-+++|+|
T Consensus 443 ~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-k~~gs~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 443 IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-KCSGSPITHLDWSSDSQ 504 (626)
T ss_pred EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-eecCceeEEeeecCCCc
Confidence 5555 89999999999999999999999999997766543343332 22222223355555554
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=209.36 Aligned_cols=239 Identities=22% Similarity=0.272 Sum_probs=188.6
Q ss_pred eeEEEEcCCCCEEEEee--CCCcEEEEeCCC------------ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEE
Q psy4754 29 ATSVDFSVSGRLLFAGY--NDYTINVWDSLK------------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~--~dg~v~iwd~~~------------~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~ 94 (304)
|.+++.+|+|..+|||+ .||.++||+... ...+-+...|.+.|.|+.|+|||++|++||.|+.+
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v-- 93 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV-- 93 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE--
Confidence 89999999999999999 999999999642 12233456799999999999999999999999886
Q ss_pred EEeeeCC------------------CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 95 RLFDLRA------------------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 95 ~~wd~~~------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
.+|+... .+....+..+. ..+..+.|+|++.++++++.|++|.+|+..+...+..+.+|.
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~--~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD--SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCC--CccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 5677652 01122222222 236788999999999999999999999999998899999999
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeec----CceeeeeeEEEEcCCCCEEEEEe----CCCcEEE
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK----DSILFGATSVDFSVSGRLLFAGY----NDYTINV 228 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~~l~sg~----~d~~i~i 228 (304)
..|..+.|.|-|++||+-+.|+++ ++|...+-.....+.+ -.....+..+.|||||++|++.. ...++.|
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrti--kvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTL--KVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccceEECCccCeeeeecCCceE--EEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 999999999999999999999997 5787544222222211 11112357899999999999952 3356888
Q ss_pred EeCCCceeeEEeeccccceEEEEEccC-----CC------------EEEEeecCCeeeeccc
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVSPD-----GT------------AFSSGSWDTTLRDEES 273 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~sp~-----g~------------~lasgs~D~~i~~~~~ 273 (304)
.+-.+...-..+.||.+++.+++|+|- .. .+|+||.|++|-+|..
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 877777666778999999999999984 11 6899999999999975
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=180.42 Aligned_cols=242 Identities=17% Similarity=0.164 Sum_probs=178.5
Q ss_pred ccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCC-ceee-eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 26 LFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK-CCRV-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 26 ~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~-~~~~-~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..+|++++||| ...++++||.||+||+|++.. |... +....|.++|.+++|+.||..+++|+.|+.+ ++||+.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~--k~wDL~S~ 104 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA--KLWDLASG 104 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCce--EEEEccCC
Confidence 44699999999 456777999999999999876 3332 3445799999999999999999999999995 79999988
Q ss_pred eeEeEEeccceeeceeeeEEcCCCC--EEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGR--LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+....-..+. ++..+.|-+... .|++|+.|.++++||++...++.++. -+..+.++..-. ..++.+..++.|
T Consensus 105 Q~~~v~~Hd~---pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~--pm~vVata~r~i 178 (347)
T KOG0647|consen 105 QVSQVAAHDA---PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLY--PMAVVATAERHI 178 (347)
T ss_pred Ceeeeeeccc---ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccC--ceeEEEecCCcE
Confidence 6554433332 455666655444 89999999999999999877766543 345666665432 255666667775
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc--eeeEEeecccc---------ceEE
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHEN---------RVSC 249 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~--~~~~~~~~h~~---------~i~~ 249 (304)
.+|+++++.....-........+.+++..++.+..+.|+-.|.+.|..+..+ ..--+++-|.. .|++
T Consensus 179 --~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 179 --AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred --EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 5899876543222111112345688999999888899999999999876654 33334555652 5788
Q ss_pred EEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 250 LQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 250 l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|+|+|.-..|+|.+.||++-+||.+...
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhh
Confidence 9999999999999999999999865543
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=193.91 Aligned_cols=266 Identities=20% Similarity=0.264 Sum_probs=216.0
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
+.|...+..+.|-++...|++|+.|..|++|++... +.+.++.|-.++|+.+.|-++++++++++.|+.. ++|++.
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~--r~Wnvd 249 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL--RLWNVD 249 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce--eeeecc
Confidence 455556899999999899999999999999998654 4778888889999999999999999999999994 799999
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
..+...++..|. ..++++.|......+++|+.|.+|+.||+.+..+..++.- ...+..+..+ ...+++|-.|+.+
T Consensus 250 ~~r~~~TLsGHt--dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 250 SLRLRHTLSGHT--DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred chhhhhhhcccc--cceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccce
Confidence 888887777654 3567888887777799999999999999988766665431 2345556655 4478899899985
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc----ccceEEEEEccCC
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH----ENRVSCLQVSPDG 256 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h----~~~i~~l~~sp~g 256 (304)
+.||.++.......+.++ .++++..+++|..+.+.+.|.++.+.|+.+.+....+... ....+.+.|||++
T Consensus 325 --RfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 325 --RFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred --EEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 799999988887776664 5799999999999999999999999999887766665532 2347889999999
Q ss_pred CEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCC
Q psy4754 257 TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRG 301 (304)
Q Consensus 257 ~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (304)
.|+|+||.|+.|.+|+...+.++..+..+-..+ +-..+.+.|-|
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~sG 443 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPSG 443 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCCC
Confidence 999999999999999999999888887665554 33445555543
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=190.86 Aligned_cols=255 Identities=17% Similarity=0.231 Sum_probs=196.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|+-|+|||+.+.++...+..+ ..-|..+.+.. ..++++++|.+|+.|...- .+.+++.+ +..+..+.-+..+.
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH--~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAH--EGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNS 160 (433)
T ss_pred cCceEEEEehhhhhhhheeecc--cCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccc
Confidence 6899999999999887666533 33488888875 5677999999999999754 35555432 45677788777778
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCE-EEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
.++|||.+ |-+||.....++..++... ..+.++.|+|.... |+++..|+.|.+||+++.+++..+. -...-+
T Consensus 161 ~FaTcGe~----i~IWD~~R~~Pv~smswG~--Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN 233 (433)
T KOG0268|consen 161 VFATCGEQ----IDIWDEQRDNPVSSMSWGA--DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTN 233 (433)
T ss_pred cccccCce----eeecccccCCccceeecCC--CceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecccc
Confidence 89999876 4689998888887765532 34678999997665 5556689999999999988876543 224567
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
.++|+|++-.|.+++.|..+ ..+|.+..+. +.++..+ ...|.+++|||.|+-+++|+.|++|+||....+..-..
T Consensus 234 ~IswnPeafnF~~a~ED~nl--Y~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNL--YTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred ceecCccccceeeccccccc--eehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 79999977789999999985 6899887543 4444443 35689999999999999999999999998765432211
Q ss_pred e-eccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 240 L-MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 240 ~-~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+ ....+.|.|+.||.|.++++|||.|+.||+|-.
T Consensus 310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 310 YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 1 112468999999999999999999999999954
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=200.85 Aligned_cols=243 Identities=21% Similarity=0.244 Sum_probs=198.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC---CCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d---~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
+++.+++.+|+|+.||+|..-|++++|++...+.+-.+.+|..+|.||.++.. .++|+|+|.|+.| .++|+...-
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlI--HV~Dv~rny 537 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLI--HVYDVKRNY 537 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceE--EEEeccccc
Confidence 45789999999999999999999999999988888888999999999999863 4689999999996 579986543
Q ss_pred e-EeEEeccceeeceeeeEEcCCC--CEEEEEeCCCeEEEecCCccccceeccCc-----ccceeEEEEcCCCcEEEEee
Q psy4754 104 E-VACYKKDSILFGATSVDFSVSG--RLLFAGYNDYTINVWDSLKCCRVNHLMGH-----ENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~s~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~las~s 175 (304)
. +..+..+ ..+++++.|-..+ ..++++++|..|.+--..+......+..| ...+..|+..|..+++++++
T Consensus 538 ~l~qtld~H--SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 538 DLVQTLDGH--SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred chhhhhccc--ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 2 2333332 3467899998776 67889999998876433322222223322 24577899999999999999
Q ss_pred cCCceEEEEeeecCCceEEEeecCce-eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 176 WDTTLRCRLFDLRADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
+|..| ++||+.+++....++.... ......+...|.|.|+++...|+++-++|..+++++.++.||.+.|+.+.|++
T Consensus 616 QDrni--rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 616 QDRNI--RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred cccce--EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 99985 7999999999888875432 13345678899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeecCCeeeeccccc
Q psy4754 255 DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~~~~~ 275 (304)
|-++|++.|-|+-|-+|.+.-
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999997743
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-25 Score=198.85 Aligned_cols=247 Identities=18% Similarity=0.193 Sum_probs=198.4
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc-eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 101 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~ 101 (304)
..|..+-+.+.|.|+|.+|++++.||.|++|+...- +...++..+...|.+++.. +++|++|+.++++ ..+.+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv--~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTV--LRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceE--EEeeCCC
Confidence 345556899999999999999999999999997655 4445554477788877754 6699999999996 5677665
Q ss_pred CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceE
Q psy4754 102 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
+..-..+.. ...+++.++|+.+|++++.|+.|-.|++-++........+.+|.++|.+|.|+|+++++|+.+.||.+
T Consensus 86 ~~~~~iL~R--ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v- 162 (933)
T KOG1274|consen 86 GEEDTILAR--FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV- 162 (933)
T ss_pred CCccceeee--eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE-
Confidence 443221111 12356789999999999999999999999988888888899999999999999999999999999996
Q ss_pred EEEeeecCCceEEEeecCc----e--eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec--cccceEEEEEc
Q psy4754 182 CRLFDLRADKEVACYKKDS----I--LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVS 253 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~----~--~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s 253 (304)
++||+.+......+..-. . ...++.++|+|+|-.++.-..|+.|++|+...++....+.. |...+.++.||
T Consensus 163 -~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 163 -QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred -EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 689998876544432111 0 12357889999987777877899999999988888777654 55669999999
Q ss_pred cCCCEEEEeecCCeeeeccccccc
Q psy4754 254 PDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 254 p~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|+|.|||+++.|+.|-+||.+..+
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccch
Confidence 999999999999999999988744
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=196.52 Aligned_cols=237 Identities=24% Similarity=0.338 Sum_probs=185.5
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee-Ee---EEeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE-VA---CYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~-~~---~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
.+.+|...|.++++-|.|-.|+|||.|.++ ++||+..... .+ .+... ....+.++.|++.+..++..+....+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v--~~wDf~gMdas~~~fr~l~P~-E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTV--KFWDFQGMDASMRSFRQLQPC-ETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceE--EEEecccccccchhhhccCcc-cccccceeeecCCCCeEEEEecCcce
Confidence 467888999999999999999999999996 6899964321 11 11111 11246899999999999999889999
Q ss_pred EEecCCcccc---------c---eeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCc-eEEEeecC---ce
Q psy4754 139 NVWDSLKCCR---------V---NHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADK-EVACYKKD---SI 201 (304)
Q Consensus 139 ~iwd~~~~~~---------~---~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~-~~~~~~~~---~~ 201 (304)
+++|-...+. + ....||...++|.+|+|+. +.|+||+.|+++ |+||+...+ ...+++.. ..
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl--RiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL--RIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE--EEEecCCchhheeEEeeccCCCc
Confidence 9999432211 1 1236899999999999975 579999999996 799987654 34444322 22
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee---eEEeecccc--ceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---VNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~--~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
..++++++|+|+|+.||+|..||.|.+|+...... ...-..|.. .|+||+||+||++|+|-+.|.++|+||++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 24688999999999999999999999999643221 122245776 8999999999999999999999999999998
Q ss_pred chhheeeccccCCceeEEEEEecCCccC
Q psy4754 277 YMQYLLRSRITKPTQGLTVYFQDRGRSI 304 (304)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (304)
..+.+-++.+..++.+-...|+|+.++|
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEE
Confidence 8888888999999999899999987754
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=200.84 Aligned_cols=265 Identities=21% Similarity=0.326 Sum_probs=215.4
Q ss_pred CceeEEeeccccceEeeee--ccccccc--eeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYK--KDSILFG--ATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~--~~~~~~~--i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~ 76 (304)
|+.||+|+....+-.+.-+ .....|. |+.++...+|+.|+++|.|-+|++|+...+ -++.+++.|.+.|.||+.
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~ 125 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAY 125 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeee
Confidence 7889999998875421111 1222333 788888889999999999999999999877 578889999999999999
Q ss_pred -CCCCCeEEEEeCCCceEEEEeeeCCCee--EeEEe---cc----ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc
Q psy4754 77 -SPDGTAFSSGSWDTTLRCRLFDLRADKE--VACYK---KD----SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 77 -s~d~~~l~sgs~D~~i~~~~wd~~~~~~--~~~~~---~~----~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 146 (304)
.++...++|||.|+.| .+||+..+.. +..+. .. +...++-+++..+.+..+++|+..+.+++||-++.
T Consensus 126 ~ak~~~lvaSgGLD~~I--flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 126 IAKNNELVASGGLDRKI--FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred cccCceeEEecCCCccE--EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 8888899999999996 6899986633 21111 00 12234567888888889999999999999999999
Q ss_pred ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcE
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 226 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i 226 (304)
.++..+.||++.|.++..++||+.++++|.|++| ++||+..-+++.++..+. -.++++..+|+-.++.+|+.|+.|
T Consensus 204 ~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI--rlWdLgqQrCl~T~~vH~--e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 204 KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI--RLWDLGQQRCLATYIVHK--EGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cceeeeeccccceEEEEEcCCCCeEeecCCCceE--EeeeccccceeeeEEecc--CceEEEeeCCCcceEEecCCCCcE
Confidence 9999999999999999999999999999999996 799999888888887665 358999999999999999999999
Q ss_pred EEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 227 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 227 ~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..=|+.+.....-+.....+|..+..+....-+-.++.|..|+=|-.
T Consensus 280 ~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 280 YRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred EecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 98888775544445556778888988866566677889999998854
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=185.87 Aligned_cols=238 Identities=19% Similarity=0.283 Sum_probs=201.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
.+++++...|..+.++||+.|.++.++|-..++.+..++||...|..+.++|+...+++++.|..| ++|.........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i--~vws~~~~s~~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEII--RVWSVPLSSEPT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceE--EeeccccccCcc
Confidence 348889988887899999999999999999999999999999999999999999999999999985 789987655444
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--cccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
....+. ..++.+..+|.|+||++++.|++..+.|++++..+..... ..-.+++.+|+|||.+|.+|..|+.+ ++
T Consensus 298 ~~~~h~--~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v--ki 373 (506)
T KOG0289|consen 298 SSRPHE--EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV--KI 373 (506)
T ss_pred cccccc--ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceE--EE
Confidence 333322 3567888999999999999999999999998776654332 12248899999999999999999986 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-ccceEEEEEccCCCEEEEee
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~lasgs 263 (304)
||+.+...+..|..+. .++..+.|+.+|-+|+++.+|+.|++||++..+-..++.-. ..+|.++.|.+.|.+|+.++
T Consensus 374 wdlks~~~~a~Fpght--~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHT--GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEcCCccccccCCCCC--CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999988888888765 57899999999999999999999999999887777666543 24799999999999999999
Q ss_pred cCCeeeecc
Q psy4754 264 WDTTLRDEE 272 (304)
Q Consensus 264 ~D~~i~~~~ 272 (304)
.|-+|.+..
T Consensus 452 ~~l~Vy~~~ 460 (506)
T KOG0289|consen 452 SDLQVYICK 460 (506)
T ss_pred ceeEEEEEe
Confidence 887776554
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=187.39 Aligned_cols=242 Identities=20% Similarity=0.229 Sum_probs=186.6
Q ss_pred cccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCce----------eeeeecCCcCcEEEEEECCCCC-eEEEEeCCCce
Q psy4754 25 ILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCC----------RVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTL 92 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~----------~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i 92 (304)
+...|+-+...|..+ ++|+++..+.|.|||..+.. +-..+.+|.+.-.+|+|++..+ .|++|+.|.++
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 333477788888765 67788999999999975432 1126789999888999999655 89999999995
Q ss_pred EEEEeeeCCCee-------EeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCC--ccccceeccCcccceeEE
Q psy4754 93 RCRLFDLRADKE-------VACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 93 ~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~v 162 (304)
++||+..... ...+..+ ...+..++|++- ...|++++.|+.+.|||++ +.+......+|.++|.|+
T Consensus 203 --~lwdi~~~~~~~~~~~p~~~~~~h--~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 203 --CLWDINAESKEDKVVDPKTIFSGH--EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred --EEEeccccccCCccccceEEeecC--CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 7999975433 1122222 224667888875 4467889999999999999 455556678999999999
Q ss_pred EEcC-CCcEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCC------
Q psy4754 163 QVSP-DGTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK------ 233 (304)
Q Consensus 163 ~~sp-~~~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~------ 233 (304)
+|+| ++..|||||.|+++ .+||+|+... +..+..+. -.+..+.|+|.. ..||+++.|+.+.|||+..
T Consensus 279 ~fnp~~~~ilAT~S~D~tV--~LwDlRnL~~~lh~~e~H~--dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTV--ALWDLRNLNKPLHTFEGHE--DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred EeCCCCCceEEeccCCCcE--EEeechhcccCceeccCCC--cceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 9999 55689999999996 6999998653 55554443 467899999985 5678888999999999753
Q ss_pred --------ceeeEEeeccccceEEEEEccCC-CEEEEeecCCeeeecccc
Q psy4754 234 --------CCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 234 --------~~~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~ 274 (304)
.+.+....||...|..+.|+|+- -.|+|.+.|+.+++|...
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23346677899999999999975 467788999999999764
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=200.21 Aligned_cols=260 Identities=20% Similarity=0.312 Sum_probs=200.7
Q ss_pred CCCceeEEeeccccc----eEeeee-ccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCC---ceeeeeecCCcCcE
Q psy4754 1 MGKNHCRLFDLRADK----EVACYK-KDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK---CCRVNHLMGHENRV 71 (304)
Q Consensus 1 ~~~~~v~~wd~~~~~----~~~~~~-~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~---~~~~~~~~~h~~~V 71 (304)
+|..+.+||..+... +...+. +.....++..+.|.. ..++|||++..|.|-+||+.. ...+..|..|.-.|
T Consensus 57 AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~ 136 (839)
T KOG0269|consen 57 AGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSA 136 (839)
T ss_pred ecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccce
Confidence 466677888666542 221111 122233356677763 467999999999999999987 45566778899999
Q ss_pred EEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccc-c
Q psy4754 72 SCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCC-R 148 (304)
Q Consensus 72 ~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~-~ 148 (304)
.++.|++ ..++|+|||.|++| +.||++.......+..+. .++..|.|+|. +..|+++...|.+.+||++... +
T Consensus 137 ~~ldfh~tep~iliSGSQDg~v--K~~DlR~~~S~~t~~~nS--ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~ 212 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTV--KCWDLRSKKSKSTFRSNS--ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC 212 (839)
T ss_pred eeeeeccCCccEEEecCCCceE--EEEeeecccccccccccc--hhhhceeeccCCCceEEEecCCceEEEeeccCchhH
Confidence 9999998 45799999999996 579999877776665543 36788999985 6678999999999999998754 4
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc--eEEEeecCceeeeeeEEEEcCCCCE-EEEEe--CC
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRL-LFAGY--ND 223 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~-l~sg~--~d 223 (304)
...+.+|.++|.|+.|+|++.+|||||.|+.+ ++||..+.+ .+.++... .++..+.|-|+-++ |++++ .|
T Consensus 213 ~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v--kiWd~t~~~~~~~~tInTi---apv~rVkWRP~~~~hLAtcsmv~d 287 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPNREWLATGGRDKMV--KIWDMTDSRAKPKHTINTI---APVGRVKWRPARSYHLATCSMVVD 287 (839)
T ss_pred HHHhhcccCceEEEeecCCCceeeecCCCccE--EEEeccCCCccceeEEeec---ceeeeeeeccCccchhhhhhcccc
Confidence 56788999999999999999999999999996 578876544 34444433 46789999999765 55543 57
Q ss_pred CcEEEEeCCCce-eeEEeeccccceEEEEEcc-CCCEEEEeecCCeee
Q psy4754 224 YTINVWDSLKCC-RVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLR 269 (304)
Q Consensus 224 ~~i~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~ 269 (304)
..|+|||+.++- +..++..|...++.++|.. |-..|.++|.|+++-
T Consensus 288 tsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 288 TSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 789999998764 4567888999999999965 557888999999885
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=207.95 Aligned_cols=230 Identities=28% Similarity=0.402 Sum_probs=203.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.+.++..-..++.+++|+.|..+-+|...+-..+..+.+|..+|.+|.|+++..+|+.|+.||+| ++||+.....++.
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsasgti--K~wDleeAk~vrt 107 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTI--KVWDLEEAKIVRT 107 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCce--eeeehhhhhhhhh
Confidence 36777776678899999999999999998888888899999999999999999999999999996 6899998776665
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
+..+ ...+.++.|+|-+.++++|+.|..+.+||++...+...+.+|..-|..+.|+|+|+++++++.|.++ ++||+
T Consensus 108 Ltgh--~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv--ki~d~ 183 (825)
T KOG0267|consen 108 LTGH--LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV--KIWDL 183 (825)
T ss_pred hhcc--ccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee--eeecc
Confidence 5433 3457789999999999999999999999999888888899999999999999999999999999996 68999
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
..++.+..|+.+. ..+.++.|+|..-++++|+.|+++++||+++-+.+.........|.|++|+|++..+++|-.+
T Consensus 184 ~agk~~~ef~~~e--~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHE--GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccccccccccc--ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9998888887665 356788999999999999999999999999888888777778899999999999999998543
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=196.52 Aligned_cols=235 Identities=20% Similarity=0.387 Sum_probs=192.9
Q ss_pred eeeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCC-CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 60 RVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 60 ~~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
.+.++.+|...|+++.|.| .+.+|+|++.|+.| .+|++.. ...++.+..+.. ++..+.|+.+|..|++++.|+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~v--klW~vy~~~~~lrtf~gH~k--~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLV--KLWNVYDDRRCLRTFKGHRK--PVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceE--EEEEEecCcceehhhhcchh--hhhhhhccccCCeeeeeeccee
Confidence 4667889999999999999 78899999999996 6899865 677888877643 6788999999999999999999
Q ss_pred EEEecCCccccceeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 138 INVWDSLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 138 i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
+++||.++++++..+.. ...+.|+.|.||+ +.|++|+.|+.| +.||.|+++.++.+..+- ..+..+.|-++|+.
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki--~~wDiRs~kvvqeYd~hL--g~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKI--RQWDIRSGKVVQEYDRHL--GAILDITFVDEGRR 356 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcE--EEEeccchHHHHHHHhhh--hheeeeEEccCCce
Confidence 99999999988766532 2357899999998 789999999986 699999998777665443 46789999999999
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeec-cccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce---e
Q psy4754 217 LFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ---G 292 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~---~ 292 (304)
+++.++|++++||+...+..+.-+.. +.-...|+..+|++..++.=|.|..|-++...+.| +.+.+-+-+++.. +
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYS 435 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCce
Confidence 99999999999999887766654433 23356799999999999999999999999877777 3334444444432 5
Q ss_pred EEEEEecCCccC
Q psy4754 293 LTVYFQDRGRSI 304 (304)
Q Consensus 293 ~~~~~~~~~~~~ 304 (304)
|++.|+|||+-|
T Consensus 436 ~~v~fSpDG~~l 447 (503)
T KOG0282|consen 436 CQVDFSPDGRTL 447 (503)
T ss_pred eeEEEcCCCCeE
Confidence 999999999854
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=207.65 Aligned_cols=225 Identities=26% Similarity=0.420 Sum_probs=194.7
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceee
Q psy4754 36 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 115 (304)
Q Consensus 36 ~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~ 115 (304)
|.+.+++.+..+-.+++||... +-+|...|.++..-..++.+++|++|..+ -||.+.....+-.+..+. .
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~--~L~~i~kp~~i~S~~~he--s 71 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKV--NLWAIGKPNAITSLTGHE--S 71 (825)
T ss_pred Ccccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceee--ccccccCCchhheeeccC--C
Confidence 3445566777777888998643 45788999999987788999999999764 689887666555444432 3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEE
Q psy4754 116 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 195 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~ 195 (304)
+|.++.|+++...+++|+++|+|++||+.....++++.+|...+.+|+|+|-+.++|+|+.|... .+||.+...+...
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~--~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDL--KIWDIRKKGCSHT 149 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccc--eehhhhccCceee
Confidence 57899999999999999999999999999988899999999999999999999999999999986 5899998778777
Q ss_pred eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 196 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+..+. ..+..+.|+|+|+++++|++|.+++|||...++.+.+|.+|++.|.++.|+|....+++||.|+++++|++.
T Consensus 150 ~~s~~--~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 150 YKSHT--RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ecCCc--ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 76643 457889999999999999999999999999999999999999999999999999999999999999999975
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=170.35 Aligned_cols=245 Identities=20% Similarity=0.230 Sum_probs=188.7
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
..+|+++.|+|.+..|+.+++||++++||....+... ...|..++.+++|.+ -..+++|+.|+.| +.+|+.+++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-~~~~~~plL~c~F~d-~~~~~~G~~dg~v--r~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-KFKHGAPLLDCAFAD-ESTIVTGGLDGQV--RRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-heecCCceeeeeccC-CceEEEeccCceE--EEEEecCCcce
Confidence 3459999999999999999999999999998874333 345999999999987 4578899999995 78999887765
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEe
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~ 185 (304)
.....+ .++.++.+.+....+++|+.|++|++||.+.......+. ....|.++..+ +..|+.|..|..+ .+|
T Consensus 89 ~igth~---~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v--~iy 160 (323)
T KOG1036|consen 89 QIGTHD---EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKV--LIY 160 (323)
T ss_pred eeccCC---CceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceE--EEE
Confidence 444333 357889999888899999999999999988644444432 33478888775 5578888888886 589
Q ss_pred eecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc----eeeEEeeccc---------cceEEEEE
Q psy4754 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHE---------NRVSCLQV 252 (304)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~---------~~i~~l~~ 252 (304)
|+++...............+.++++-|+++=+++++-||.|.+=..... .+.-.++-|. -||++|+|
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 9998765443334444456789999999998999999999887333222 2233455564 38999999
Q ss_pred ccCCCEEEEeecCCeeeeccccccchhhee
Q psy4754 253 SPDGTAFSSGSWDTTLRDEESKNRYMQYLL 282 (304)
Q Consensus 253 sp~g~~lasgs~D~~i~~~~~~~~~~~~~~ 282 (304)
+|-...||||+.||.|-+||+.+....+++
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhc
Confidence 999999999999999999998776655444
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=182.67 Aligned_cols=262 Identities=23% Similarity=0.326 Sum_probs=203.7
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEe-eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 83 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg-~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 83 (304)
+|++||+.+|..+..+.......+-..-+. .+.+++++ .....+.+|...+........--.++|.+|+-+|+|.+|
T Consensus 19 ~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 19 NCIVWDLRTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred ceeEEecCCCceeEEecCcccccchhhhhh--chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 499999999987766654321111111111 23555555 445689999987765443222235789999999999999
Q ss_pred EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC---------ccccceeccC
Q psy4754 84 SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---------KCCRVNHLMG 154 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~---------~~~~~~~~~~ 154 (304)
+.|.--+.+ .+|.+.++..+..+..|. ..++++.|+.|+.++++|+.||.|.+|.+. +..++..+..
T Consensus 97 ~ag~i~g~l--YlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 97 LAGTISGNL--YLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred EeecccCcE--EEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 988777775 799999999887776654 468999999999999999999999999742 2345677889
Q ss_pred cccceeEEEEcCCC--cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 155 HENRVSCLQVSPDG--TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 155 h~~~v~~v~~sp~~--~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
|+-+|+.+...+.+ ..++|+|.|+++ ++||+..+..+..+.... .+.+++..|.+..+.+|.++|.|.+.++.
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~--k~wdlS~g~LLlti~fp~---si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTI--KLWDLSLGVLLLTITFPS---SIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceE--EEEEeccceeeEEEecCC---cceeEEEcccccEEEecCCcceEEeeehh
Confidence 99999999987653 579999999995 699999988777664433 45899999999999999999999987643
Q ss_pred C----------------ceeeEEeecccc--ceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 233 K----------------CCRVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 233 ~----------------~~~~~~~~~h~~--~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+ +.....+.||.+ .|+||+++-||..|++|+.|+.+.+||....+
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 2 334566889988 99999999999999999999999999976544
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=172.39 Aligned_cols=242 Identities=24% Similarity=0.326 Sum_probs=185.6
Q ss_pred cccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCce------------e---eeeecCCcCcEEEEEECC-CCCeEEEEe
Q psy4754 25 ILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCC------------R---VNHLMGHENRVSCLQVSP-DGTAFSSGS 87 (304)
Q Consensus 25 ~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~------------~---~~~~~~h~~~V~~l~~s~-d~~~l~sgs 87 (304)
|..+|+++...+ .|+++++|+.||.|.+||++... + ..+-.+|+-.|.++.|-| |.-.+.|+|
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 455699999987 58999999999999999986422 1 112236778899999999 556889999
Q ss_pred CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC---CCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEE
Q psy4754 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 164 (304)
Q Consensus 88 ~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 164 (304)
-|.++ ++||..+-+....++.+..++ +-++|| ...++|+|..+-.|++.|+.++..-.++.||.+.|.+|.|
T Consensus 122 FDhtl--KVWDtnTlQ~a~~F~me~~VY---shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 122 FDHTL--KVWDTNTLQEAVDFKMEGKVY---SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ccceE--EEeecccceeeEEeecCceee---hhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 99996 689999988888887766554 333444 2457888899999999999999998999999999999999
Q ss_pred cCCCcE-EEEeecCCceEEEEeeecCC-ceEEEeecCc------------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 165 SPDGTA-FSSGSWDTTLRCRLFDLRAD-KEVACYKKDS------------ILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 165 sp~~~~-las~s~d~~i~i~~~d~~~~-~~~~~~~~~~------------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
+|..++ +|+||.|+.+ ++||++.. .++.++..+. +...++.++|+.++.++++.+.|..+++|+
T Consensus 197 sp~~e~vLatgsaDg~i--rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAI--RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ccCceeEEEecCCCceE--EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 998775 7899999995 79999865 3333332111 123478999999999999999999999997
Q ss_pred CCC-----------------------------------------------ceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 231 SLK-----------------------------------------------CCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 231 ~~~-----------------------------------------------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
... +..++.+.+|...|.|.+|-|+=+..-+|+
T Consensus 275 ~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 543 233444556666777777777777777777
Q ss_pred cCCeeeeccc
Q psy4754 264 WDTTLRDEES 273 (304)
Q Consensus 264 ~D~~i~~~~~ 273 (304)
.|+.|..|-+
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 7777777744
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=170.20 Aligned_cols=238 Identities=20% Similarity=0.270 Sum_probs=181.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCC--EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR--LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
.|.||+|||+.+.+.+..+- .|...|+++.|.++-. .|++|+.||.|.+|+...-+.+.++++|.+.|+.|+++|.
T Consensus 61 sDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred CCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence 47899999999998765433 3455699999998865 8999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccce
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
+++-+|.+.|+.+ ++||+-.++.-.+..... -.+.+.|+|.|.+++.+.. ..|-+|.+.+.....++ ..+..+
T Consensus 139 ~KLALsVg~D~~l--r~WNLV~Gr~a~v~~L~~---~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i-~~~~r~ 211 (362)
T KOG0294|consen 139 GKLALSVGGDQVL--RTWNLVRGRVAFVLNLKN---KATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREI-ENPKRI 211 (362)
T ss_pred CceEEEEcCCcee--eeehhhcCccceeeccCC---cceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhh-hccccc
Confidence 9999999999995 799998776655544322 1346899999998888775 46899987665443332 233567
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEE--EcCCCCEEEEEeCCCcEEEEeCCCc---
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD--FSVSGRLLFAGYNDYTINVWDSLKC--- 234 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~~g~~l~sg~~d~~i~iwd~~~~--- 234 (304)
.++.|. ++..+++|+.|..+ .+||..+..+...+.++. ..|..+. -.|++.+|+++++||.|+|||+...
T Consensus 212 l~~~~l-~~~~L~vG~d~~~i--~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 212 LCATFL-DGSELLVGGDNEWI--SLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred eeeeec-CCceEEEecCCceE--EEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 777776 45688899999885 689988877766665554 2344554 2588999999999999999998654
Q ss_pred --eeeEEeeccccceEEEEEcc
Q psy4754 235 --CRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 235 --~~~~~~~~h~~~i~~l~~sp 254 (304)
+.+..+.- ..+++|++...
T Consensus 287 ~~~~l~e~n~-~~RltCl~~~~ 307 (362)
T KOG0294|consen 287 RPTLLAELNT-NVRLTCLRVKL 307 (362)
T ss_pred CcceeEEeec-CCccceeeehh
Confidence 33444332 45677776543
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=170.36 Aligned_cols=239 Identities=17% Similarity=0.183 Sum_probs=176.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEEEECC--CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.|..+...--|+.|||+++|++|||+.+..+ ..+..|.||.+||+.++|.. -|++|+|++.|+.+ .+|.-..+
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV--IiWke~~g 90 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV--IIWKEENG 90 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE--EEEecCCC
Confidence 3554554445899999999999999998654 45677899999999999976 78999999999996 57886655
Q ss_pred eeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCcc---ccceeccCcccceeEEEEcCC---C------
Q psy4754 103 KEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSPD---G------ 168 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~v~~sp~---~------ 168 (304)
+-...+....+..++++++|.|. |-.|+.++.||.|.+.+.... ..-.....|+-.|+++++.|. |
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence 32222222222345788888875 557888999999999886543 122345789999999999985 4
Q ss_pred -----cEEEEeecCCceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCC----CEEEEEeCCCcEEEEeCCCce--
Q psy4754 169 -----TAFSSGSWDTTLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSG----RLLFAGYNDYTINVWDSLKCC-- 235 (304)
Q Consensus 169 -----~~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g----~~l~sg~~d~~i~iwd~~~~~-- 235 (304)
+.|++|+.|..++ +|+..+++- ...+..+. --+..+++.|.- .+||++++||++.||......
T Consensus 171 ~~~~~krlvSgGcDn~Vk--iW~~~~~~w~~e~~l~~H~--dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCDNLVK--IWKFDSDSWKLERTLEGHK--DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccccceeeccCCcccee--eeecCCcchhhhhhhhhcc--hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 5699999999975 787766532 22233332 246788888873 579999999999999654210
Q ss_pred -eeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 236 -RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 236 -~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+..-+..-...++.+.||+.|..|+.+.-|..+.+|-
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1111223457899999999999999999999999993
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=186.60 Aligned_cols=238 Identities=25% Similarity=0.341 Sum_probs=192.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
|.++.++...+.++||+.- -|+|||+... .++..+. ...+.|+++...|||+.|++|+.-.++ -+||+...+
T Consensus 422 VcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl--siWDLAapT 498 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL--SIWDLAAPT 498 (705)
T ss_pred EEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee--eeeeccCCC
Confidence 7788899888999999765 6999998642 2333333 246789999999999999999987775 689998765
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
.....+....-..+-.++++||.+..+++..||.|.|||+.....++++.||++.+.|+.+++||..+-||+-|.++ |
T Consensus 499 prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv--R 576 (705)
T KOG0639|consen 499 PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV--R 576 (705)
T ss_pred cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce--e
Confidence 43222221111223467899999999999999999999999999999999999999999999999999999999996 6
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
.||+++++.+..+.- ...+.++-++|.+..++.|.+.+.+.|-.....+ ...+.-|+.-|.+|.|++.|+.+++-+
T Consensus 577 cWDlregrqlqqhdF---~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 577 CWDLREGRQLQQHDF---SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ehhhhhhhhhhhhhh---hhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecC
Confidence 899999877654322 2346788899999999999999999888765543 344566999999999999999999999
Q ss_pred cCCeeeeccccc
Q psy4754 264 WDTTLRDEESKN 275 (304)
Q Consensus 264 ~D~~i~~~~~~~ 275 (304)
.|..+-.|....
T Consensus 653 kDnlLnawrtPy 664 (705)
T KOG0639|consen 653 KDNLLNAWRTPY 664 (705)
T ss_pred chhhhhhccCcc
Confidence 999999996433
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=194.89 Aligned_cols=195 Identities=22% Similarity=0.301 Sum_probs=157.5
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
.|..+.|+.+ .+|+++|.|.|||||++...++++.| .|.+-|+|++|+| |.++++|||.|+. ||+|++...+...
T Consensus 371 DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K--vRiWsI~d~~Vv~ 446 (712)
T KOG0283|consen 371 DILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK--VRLWSISDKKVVD 446 (712)
T ss_pred hheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccc--eEEeecCcCeeEe
Confidence 3788899866 68889999999999999998999876 4999999999999 7889999999998 5899998766554
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec---------cCcccceeEEEEcCCC-cEEEEeec
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL---------MGHENRVSCLQVSPDG-TAFSSGSW 176 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~v~~sp~~-~~las~s~ 176 (304)
-...+ .-|+++.|.|||+..+.|+.+|.+++|+....+..... ..|. .|+++.|.|.. ..++..+.
T Consensus 447 W~Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 447 WNDLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred ehhhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecC
Confidence 33333 34789999999999999999999999997765443221 1233 79999998744 34666678
Q ss_pred CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
|..| ||+|.+....+..+++......-....|++||++|+++++|..|+||+..
T Consensus 523 DSrI--RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 523 DSRI--RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred CCce--EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 8885 79999887777777755443334577899999999999999999999863
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=174.71 Aligned_cols=246 Identities=21% Similarity=0.285 Sum_probs=194.3
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee-----
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD----- 98 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd----- 98 (304)
.|..+|-.++-....+++.+++.|.+.+||.++++.++.++.||.+.|.+++|++.+.+++++|.|.+-+ +|.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH--IW~~av~~ 223 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH--IWKAAVNW 223 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH--HHHHhhcC
Confidence 4455577787766667899999999999999999999999999999999999999999999999999964 554
Q ss_pred -eCCC---------eeEeEEec-----------c------------ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 99 -LRAD---------KEVACYKK-----------D------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 99 -~~~~---------~~~~~~~~-----------~------------~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
+... .+..+-.+ + .+...+.++.|-..++.+++++.|.+..+||.++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 3220 00000000 0 0011134556777899999999999999999999
Q ss_pred cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC
Q psy4754 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 224 (304)
Q Consensus 146 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~ 224 (304)
+..+..+.||....+.++-+|..+++++.|.|.+. ++||++.. ..+.+|+++. -.|++..|..+.+ +++|++|.
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTF--RLWDFReaI~sV~VFQGHt--dtVTS~vF~~dd~-vVSgSDDr 378 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTF--RLWDFREAIQSVAVFQGHT--DTVTSVVFNTDDR-VVSGSDDR 378 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCcee--Eeccchhhcceeeeecccc--cceeEEEEecCCc-eeecCCCc
Confidence 99999999999999999999999999999999994 79999854 2355666654 3578888877654 67999999
Q ss_pred cEEEEeCCCc-eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 225 TINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 225 ~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+|++||+.+- .++.++. -..+++-++.+..+..||.--.++.||++|++..-
T Consensus 379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 9999998753 3455554 45788999999988899988888999999985543
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=180.78 Aligned_cols=218 Identities=21% Similarity=0.297 Sum_probs=176.9
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEECCCCCe
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTA 82 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~ 82 (304)
.-+++||..++.....++.. +++++++++|.|||.-+++|+.|+++..||+... .+..-++- ...|.++++.+||++
T Consensus 291 e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcE
Confidence 34899999999887776655 5678999999999999999999999999999644 33333433 356999999999999
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc--ee
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR--VS 160 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~ 160 (304)
+++...|..+ ++++..+.......+.+ .++++..+|.++++++.--.+..+++||+..+..+..+.||+.. +.
T Consensus 369 vl~v~~d~~i--~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 369 VLLVTVDKKI--RLYNREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEecccce--eeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence 9999999885 68887654443333333 35788999999999999999999999999988888888898754 44
Q ss_pred EEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q psy4754 161 CLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSL 232 (304)
Q Consensus 161 ~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~ 232 (304)
.-+|-. +..++|+||.|+.| ++|+..+++.+.++.++. ..|++++|+|... ++|+|++||+|+||...
T Consensus 444 rSCFgg~~~~fiaSGSED~kv--yIWhr~sgkll~~LsGHs--~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKV--YIWHRISGKLLAVLSGHS--KTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EeccCCCCcceEEecCCCceE--EEEEccCCceeEeecCCc--ceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 445654 55789999999985 799999999999998876 4689999999875 57889999999999754
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-23 Score=165.55 Aligned_cols=242 Identities=16% Similarity=0.200 Sum_probs=175.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCC----ceeeeeecCCcCcEEEEEECC--CCCeEEEEeCCCceEEEEeeeCC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRA 101 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~~ 101 (304)
-|.++.|.+-|+.+|||+.|++|+|||..+ -.+....+.|.+.|..+.|.+ -|+.++++|.|+++ .+|.-..
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv--~iWEE~~ 92 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV--SIWEEQE 92 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce--eeeeecc
Confidence 389999999999999999999999999543 245666789999999999976 48999999999996 5787521
Q ss_pred C--ee-----EeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCcc------ccceecc-------Ccccce
Q psy4754 102 D--KE-----VACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKC------CRVNHLM-------GHENRV 159 (304)
Q Consensus 102 ~--~~-----~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~------~~~~~~~-------~h~~~v 159 (304)
. +. ..+-......-.++.+.|.|. |-.+++++.||.++||+.... +...++. .+..+-
T Consensus 93 ~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 93 KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 1 11 111111111224678889885 668899999999999986432 2222222 466778
Q ss_pred eEEEEcCC---CcEEEEeecCC---ceEEEEeeecCCc--eEEEeecCceeeeeeEEEEcCC----CCEEEEEeCCCcEE
Q psy4754 160 SCLQVSPD---GTAFSSGSWDT---TLRCRLFDLRADK--EVACYKKDSILFGATSVDFSVS----GRLLFAGYNDYTIN 227 (304)
Q Consensus 160 ~~v~~sp~---~~~las~s~d~---~i~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~----g~~l~sg~~d~~i~ 227 (304)
.||.|+|. ...||.|+.+. .-++.||...... ....-...++..++..++|.|. -.+||+++.|| |+
T Consensus 173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~ 251 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR 251 (361)
T ss_pred eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence 89999984 35688888761 1113466554332 2222222234457899999997 35789999999 99
Q ss_pred EEeCCC--------------------ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 228 VWDSLK--------------------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 228 iwd~~~--------------------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
||.+.. -+.+..+.+|++.|+.+.|+--|..|+|.+.||.+|+|.
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 998652 234556778999999999999999999999999999994
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=181.56 Aligned_cols=248 Identities=18% Similarity=0.247 Sum_probs=189.0
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEE
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 85 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s 85 (304)
+.+|.+....... +..-....+.|++-+|+|.+|+.|.-.|.+++|.+.+|..+..+.+|-..|+||.|+.||.+|+|
T Consensus 63 l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT 140 (476)
T KOG0646|consen 63 LHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT 140 (476)
T ss_pred ccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe
Confidence 5667766553322 12222223899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEeeeCC---------CeeEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceeccC
Q psy4754 86 GSWDTTLRCRLFDLRA---------DKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMG 154 (304)
Q Consensus 86 gs~D~~i~~~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 154 (304)
||.|+.| .+|.+.. ..++..+..| ..+++.+...+ ...++++++.|.++++||+..+..+.++.
T Consensus 141 gskDg~V--~vW~l~~lv~a~~~~~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 141 GSKDGAV--LVWLLTDLVSADNDHSVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred cCCCccE--EEEEEEeecccccCCCccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 9999996 5787632 2233333333 34566555544 45689999999999999998887766543
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC----------------ceEEEeecCceeeeeeEEEEcCCCCEEE
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD----------------KEVACYKKDSILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 218 (304)
.+.++.+++.+|-++.+..|+.++.|. +.++... ..+..+.++.....+++++++-||.+|+
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~--~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIF--QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEE--eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 456899999999999999999999864 4443221 1222333333324789999999999999
Q ss_pred EEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 219 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 219 sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
+|+.||++.|||+...+.++++....++|+.+.+.|--+....+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILF 337 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecc
Confidence 99999999999999988888887678899999997754444443
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=174.67 Aligned_cols=208 Identities=22% Similarity=0.329 Sum_probs=164.6
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC------Cee------------EeEEeccceeeceeeeEEcC
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA------DKE------------VACYKKDSILFGATSVDFSV 124 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~------~~~------------~~~~~~~~~~~~~~~~~~s~ 124 (304)
.+..|+.++++-+|++||.++++||.|.+| ++.|+.. .++ ++.+= .+...++.+.|+|
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SI--Kildvermlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHP 182 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASI--KILDVERMLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHP 182 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceE--EEeehhhhhhhcchhhhccCCcccCCceEeehh--hccCcccceeecc
Confidence 356799999999999999999999999997 5678751 111 11110 1123478899999
Q ss_pred CCCEEEEEeCCCeEEEecCCccccc--eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe-ecCce
Q psy4754 125 SGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY-KKDSI 201 (304)
Q Consensus 125 ~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~-~~~~~ 201 (304)
....|++|+.|++|+++|..+...- ........+|.++.|+|.|++++.|..-.+ +++||+.+.++...- +..++
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~--~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT--LRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc--eeEEeccceeEeeecCccccc
Confidence 9999999999999999998764321 222334568999999999999998875555 489999998774432 33344
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-cc-cceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HE-NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~-~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
...++++.+++.|++.++|+.||.|++||.-..+++.++.. |. ..|.+..|..+|+++.|.++|.++++|++..+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 45689999999999999999999999999888888888754 64 57999999999999999999999999988653
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=186.27 Aligned_cols=229 Identities=21% Similarity=0.283 Sum_probs=186.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee--eeecCCcCcEEE-EEECC-CCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSC-LQVSP-DGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~--~~~~~h~~~V~~-l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|..+++.++ ..++++|.||++++|+....+.+ +.+.+|.+.|.. +++.+ ++..|++|+.|.++ .+|...+..+
T Consensus 17 Vr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i--~v~~~~~~~P 93 (745)
T KOG0301|consen 17 VRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI--IVFKLSQAEP 93 (745)
T ss_pred hheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE--EEEecCCCCc
Confidence 777776544 57889999999999998655543 456788898877 88875 55579999999996 5899988888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
+..++.|.. .++++....++. +++|+.|.++++|-. ++....+.+|+.+|+++++-|+. .++|||.|++| ++
T Consensus 94 ~~~LkgH~s--nVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI--kl 165 (745)
T KOG0301|consen 94 LYTLKGHKS--NVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI--KL 165 (745)
T ss_pred hhhhhcccc--ceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee--ee
Confidence 877776643 467776666666 899999999999965 34566789999999999999987 89999999996 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeec
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~ 264 (304)
|.- ++.+.++++|. --|..+++-|++.+ ++++.||.|+.|++ +++.+.++.||..-|++++..+++..++|+++
T Consensus 166 Wk~--~~~l~tf~gHt--D~VRgL~vl~~~~f-lScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 166 WKG--GTLLKTFSGHT--DCVRGLAVLDDSHF-LSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred ccC--Cchhhhhccch--hheeeeEEecCCCe-EeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 976 45566666653 23677888887765 57888999999998 78889999999999999998889999999999
Q ss_pred CCeeeecccc
Q psy4754 265 DTTLRDEESK 274 (304)
Q Consensus 265 D~~i~~~~~~ 274 (304)
|+++|+|...
T Consensus 240 DrtlriW~~~ 249 (745)
T KOG0301|consen 240 DRTLRIWKKD 249 (745)
T ss_pred CceEEEeecC
Confidence 9999999754
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=164.22 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=169.7
Q ss_pred ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 64 ~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
+.||..+++.+.++.+|.+|.|++.|.+. -+|--..+..+..+..+.. .+-+++++.+.+++++|++|.++++||.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~--~vw~s~nGerlGty~GHtG--avW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTP--TVWYSLNGERLGTYDGHTG--AVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCc--eEEEecCCceeeeecCCCc--eEEEEEecCCcceeeeccccceeEEEEc
Confidence 67899999999999999999999999996 5777767788888877653 5678889999999999999999999999
Q ss_pred CccccceeccCcccceeEEEEcCCCcEEEEeecCC---ceEEEEeeecC-------CceEEEeecCceeeeeeEEEEcCC
Q psy4754 144 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT---TLRCRLFDLRA-------DKEVACYKKDSILFGATSVDFSVS 213 (304)
Q Consensus 144 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~---~i~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~s~~ 213 (304)
.+++.+.++. -..+|..+.|+++|++++.+..+. +-.+.++|++. .++...+.... ..++..-|+|-
T Consensus 82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l 158 (327)
T KOG0643|consen 82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPL 158 (327)
T ss_pred CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeeccc
Confidence 9998887654 346899999999998877766433 22346888873 33444444333 34688889999
Q ss_pred CCEEEEEeCCCcEEEEeCCCceee-EEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~-~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+++|++|.+||.|.+||..++.++ .....|...|+.+.++||..+++|||.|.+-++||...
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 999999999999999999997554 44577999999999999999999999999999998743
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=180.81 Aligned_cols=260 Identities=19% Similarity=0.270 Sum_probs=201.6
Q ss_pred CCceeEEeecccc-ceEeeeeccc--cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-e-eecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRAD-KEVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-N-HLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~-~~~~~~~~~~--~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-~-~~~~h~~~V~~l~~ 76 (304)
|++-|+|||+... ...+..+++. +..-|.+|...|||+.|++|+.-.++-|||+..-.+. + .+..-.....+|++
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 6778999999874 2223333332 3333899999999999999999999999998754322 1 12223356788999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
+||.+..+++..||.| .+||+.+...++.++.+ ..++.++.+++||..|-+|+-|++|+.||++++..+.+. ...
T Consensus 518 spDakvcFsccsdGnI--~vwDLhnq~~VrqfqGh--tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~ 592 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNI--AVWDLHNQTLVRQFQGH--TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFS 592 (705)
T ss_pred CCccceeeeeccCCcE--EEEEcccceeeecccCC--CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhh
Confidence 9999999999999995 79999998888877765 357889999999999999999999999999886654331 234
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
..|.++..+|++.+++.|=..+.+ ++-.....+.......+ .-|.++.|.+.|+++++.+.|+-+..|...-+..
T Consensus 593 SQIfSLg~cP~~dWlavGMens~v--evlh~skp~kyqlhlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNV--EVLHTSKPEKYQLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred hhheecccCCCccceeeecccCcE--EEEecCCccceeecccc---cEEEEEEecccCceeeecCchhhhhhccCccccc
Confidence 579999999999999999877774 34433333222222222 3468999999999999999999999999888877
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+...+ ....|+|+.+|.|.++++|||-|+...+++
T Consensus 668 iFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 668 IFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred eeecc-ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 76665 356899999999999999999998877664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=168.49 Aligned_cols=227 Identities=16% Similarity=0.169 Sum_probs=166.9
Q ss_pred CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccceeec
Q psy4754 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 116 (304)
Q Consensus 38 g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~ 116 (304)
+.++++++.|+.+++||+.+++.+..+..|.. +.+++|+|+++.+ ++++.|+.+ ++||..+.+....+.... .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v--~~~d~~~~~~~~~~~~~~---~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTI--QVIDLATGEVIGTLPSGP---D 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeE--EEEECCCCcEEEeccCCC---C
Confidence 35788999999999999999888888776544 6789999999876 566777775 789998877665444322 2
Q ss_pred eeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEE
Q psy4754 117 ATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 195 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~ 195 (304)
...+.++|+++.++++ ..++.+++||+.+.+.+..+.. ...+.+++|+|+++.+++++.++.. +..||.++.+....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~-~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM-AHFIDTKTYEIVDN 152 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe-EEEEeCCCCeEEEE
Confidence 3467899999977665 5689999999987666555442 2356889999999999998877654 35678877665443
Q ss_pred eecCceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEeeccc-----c--ceEEEEEccCCCEEE-EeecCC
Q psy4754 196 YKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHE-----N--RVSCLQVSPDGTAFS-SGSWDT 266 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~~h~-----~--~i~~l~~sp~g~~la-sgs~D~ 266 (304)
..... .+..++|+|+|++|+++ ..++.|++||..+++.+..+..+. . ....++|+|+++++. +.+.+.
T Consensus 153 ~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 153 VLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 32221 24678999999988654 468999999999887776654321 1 234688999999854 445567
Q ss_pred eeeeccccc
Q psy4754 267 TLRDEESKN 275 (304)
Q Consensus 267 ~i~~~~~~~ 275 (304)
.|.+||.+.
T Consensus 230 ~i~v~d~~~ 238 (300)
T TIGR03866 230 RVAVVDAKT 238 (300)
T ss_pred eEEEEECCC
Confidence 899998754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=176.52 Aligned_cols=220 Identities=19% Similarity=0.268 Sum_probs=161.6
Q ss_pred CceeEEeeccccceEe----e--eeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVA----C--YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~----~--~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~ 75 (304)
|+-|.+||-.+|+... . -........|.|+.|+.|...+|+|+.||.|++|.+.+|.+++.|. +|...|+|+.
T Consensus 234 DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~ 313 (508)
T KOG0275|consen 234 DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLS 313 (508)
T ss_pred cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEE
Confidence 6779999999997521 1 1112345569999999999999999999999999999999999985 8999999999
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc--
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-- 153 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-- 153 (304)
|+.|+..++|+|.|.++ |+-.+++++.+..++.+... ++...|+++|.++++++.||+|++|+..+.+++.++.
T Consensus 314 FSrD~SqiLS~sfD~tv--RiHGlKSGK~LKEfrGHsSy--vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 314 FSRDNSQILSASFDQTV--RIHGLKSGKCLKEFRGHSSY--VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred EccCcchhhcccccceE--EEeccccchhHHHhcCcccc--ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 99999999999999995 78899999988888776532 5678899999999999999999999988877766553
Q ss_pred CcccceeEEEE---------------------------------------------cCCCcEEEEeecCCceEEEEeeec
Q psy4754 154 GHENRVSCLQV---------------------------------------------SPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 154 ~h~~~v~~v~~---------------------------------------------sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
+...+|+++-. +|.|+++.+.+.|+.+ +.+...
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vl--YCF~~~ 467 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVL--YCFSVL 467 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEE--EEEEee
Confidence 22234444443 4444444444444432 233333
Q ss_pred CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 189 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
+++...++..+. ..+..++-+|..+.||+=++||.+++|.
T Consensus 468 sG~LE~tl~VhE--kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 468 SGKLERTLPVHE--KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCceeeeeeccc--ccccccccCcccchhhhhcccchhhhcC
Confidence 333322222111 1345666778888888877888888774
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=177.56 Aligned_cols=257 Identities=19% Similarity=0.265 Sum_probs=200.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK 109 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~ 109 (304)
.-++|+. ...||.| ....|.+|+..++.......-+.+.|+++.|+++|.+|+.|..++++ .+||....+.++.+.
T Consensus 181 nlldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v--~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTV--QIWDVKEQKKTRTLR 256 (484)
T ss_pred hHhhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeE--EEEehhhcccccccc
Confidence 4477873 3456555 45579999999887655544458999999999999999999999995 789998877777665
Q ss_pred c-cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee-ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 110 K-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 110 ~-~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
. +.. -+.++++. +..+.+|+.++.|..+|++..+.... +.+|...|..++|++|++.+|+|+.|+.+ .+||.
T Consensus 257 ~~h~~--rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~--~Iwd~ 330 (484)
T KOG0305|consen 257 GSHAS--RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV--FIWDG 330 (484)
T ss_pred CCcCc--eeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccce--EeccC
Confidence 5 332 34567776 66788999999999999988776555 78999999999999999999999999996 68999
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCC-CCEEEEE--eCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEe--
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVS-GRLLFAG--YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-- 262 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg--~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg-- 262 (304)
....+...+..+. ..|.+++|+|- ..+||+| +.|+.|++||..++..+..+.. ...|.+|.|++..+.|+++
T Consensus 331 ~~~~p~~~~~~H~--aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 331 LSPEPKFTFTEHT--AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CCccccEEEeccc--eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecC
Confidence 7777766666554 46899999997 4577774 5789999999999998887653 4689999999998877765
Q ss_pred ecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 263 s~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
-.+..|++|.+.... .......+.. =+-|+.+|+|+-
T Consensus 408 ~s~n~i~lw~~ps~~----~~~~l~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 408 YSENQITLWKYPSMK----LVAELLGHTSRVLYLALSPDGET 445 (484)
T ss_pred CCCCcEEEEeccccc----eeeeecCCcceeEEEEECCCCCE
Confidence 357789999876622 2233344444 377888888753
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=167.42 Aligned_cols=240 Identities=18% Similarity=0.204 Sum_probs=186.5
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
..|+.|++.|.+||.|..||.|.|||..+...-+++.+|-.+|++++||+||+.|+|+|.|..+ .+||+..+..+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si--~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI--KLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee--EEEeccCCCceeEE
Confidence 7899999999999999999999999999988888899999999999999999999999999985 79999877766554
Q ss_pred eccceee--------------------------------------------ceeeeEEcCCCCEEEEEeCCCeEEEecCC
Q psy4754 109 KKDSILF--------------------------------------------GATSVDFSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 109 ~~~~~~~--------------------------------------------~~~~~~~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
+.++... ......|.+.|+++++|...|.+.++|..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 3322100 01122366779999999999999999998
Q ss_pred ccccceeccCcc-cceeEEEEcCCCcEEEEeecCCceEEEEeeecCC-------ceEEEeecCcee--eeeeEEEEcCCC
Q psy4754 145 KCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVACYKKDSIL--FGATSVDFSVSG 214 (304)
Q Consensus 145 ~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~-------~~~~~~~~~~~~--~~~~~~~~s~~g 214 (304)
+.+++..+.--. ..|..+-++-.|+.|+.-+.|..| |.|+.+.. +....++.++.. ..=.++.|+.+|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvI--R~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVI--RTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceE--EEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 877776654333 568888899999999999999985 68886521 111111111111 112478899999
Q ss_pred CEEEEEeCC-CcEEEEeCCCceeeEEeeccc-cceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 215 RLLFAGYND-YTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 215 ~~l~sg~~d-~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.|+++|+.. ..++||....|..++.+.|.. .....+.|.|-...+++- .-+.+++|..
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 999998754 569999999999999888866 567889999988888887 4588888843
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=172.78 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=209.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLK--CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
+|+++.|+|..++|++|+.|++++||-+.. ...++.+.--.-+|.+..|+|+|+ .+++++.-+- ...||+.+.+.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky--~ysyDle~ak~ 292 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY--LYSYDLETAKV 292 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceE--EEEeecccccc
Confidence 399999999999999999999999999853 345555555567999999999999 8888876655 47899976654
Q ss_pred EeEEeccce-eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 105 VACYKKDSI-LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
...-+.... ........+++++++++..+..|.|.+-...+.+.+.++. -++.|..++|+.|++.+..++.++. |+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge--V~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGE--VY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCce--EE
Confidence 332221111 1124566789999999999999999999988887776654 4578999999999999888888887 47
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC------CceeeEEeeccccceEEEEEccCCC
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL------KCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~------~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+||++...++..+..++.. .-++++.+++|.|+|+|+..|-|.|||.. +++++..+..-...|+++.|+||++
T Consensus 370 v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 9999999888888665543 34788899999999999999999999843 4567777777778999999999999
Q ss_pred EEEEeec--CCeeeeccccccchhheeeccccCCceeEEEEEecCCc
Q psy4754 258 AFSSGSW--DTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 258 ~lasgs~--D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (304)
.||-+|. +..+||-..+.----.++-.+.++-..---++|+|++-
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence 9998874 67788877665443455555666655556678888653
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=180.71 Aligned_cols=270 Identities=22% Similarity=0.203 Sum_probs=188.6
Q ss_pred CceeEEeeccccceE---eeeec-cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee--ecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRADKEV---ACYKK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH--LMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~---~~~~~-~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~--~~~h~~~V~~l~~ 76 (304)
++.|.++|....+.. ..+.. ..|...|-.+.|.|....|++++-|.+++.||+++.+.... +.||...|.+++|
T Consensus 73 ~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf 152 (720)
T KOG0321|consen 73 DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECF 152 (720)
T ss_pred CCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhh
Confidence 678999998876432 11111 12334488999999667899999999999999998887766 8899999999999
Q ss_pred CCCC-CeEEEEeCCCceEEEEeeeCCCeeEe----------EEec---cc------------eeeceee---eEEcCCCC
Q psy4754 77 SPDG-TAFSSGSWDTTLRCRLFDLRADKEVA----------CYKK---DS------------ILFGATS---VDFSVSGR 127 (304)
Q Consensus 77 s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~----------~~~~---~~------------~~~~~~~---~~~s~~~~ 127 (304)
.|+. ..+++|+.|+.+ .+||.+....-. .... .. ....+.+ +.+..|..
T Consensus 153 ~~~n~~vF~tGgRDg~i--llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 153 MPTNPAVFCTGGRDGEI--LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred ccCCCcceeeccCCCcE--EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 9954 588999999996 689986322000 0000 00 0001222 45667888
Q ss_pred EEEEEeC-CCeEEEecCCcccccee--------ccCc---ccceeEEEEcCCCcE-EEEeecCCceEEEEeeecCCce--
Q psy4754 128 LLFAGYN-DYTINVWDSLKCCRVNH--------LMGH---ENRVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADKE-- 192 (304)
Q Consensus 128 ~l~sg~~-dg~i~iwd~~~~~~~~~--------~~~h---~~~v~~v~~sp~~~~-las~s~d~~i~i~~~d~~~~~~-- 192 (304)
.|++++. |+.|+|||+++...... +.-| .-.+.++.....|.+ +|+|. |++| .+|++.+...
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sI--y~ynm~s~s~sP 307 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSI--YFYNMRSLSISP 307 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcE--EEEeccccCcCc
Confidence 9999877 99999999987543321 1122 223566667666665 55555 8885 6899887543
Q ss_pred EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce-eeEEeeccccceEEEEEccC-CCEEEEeecCCeeee
Q psy4754 193 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRD 270 (304)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~-~~~~~~~h~~~i~~l~~sp~-g~~lasgs~D~~i~~ 270 (304)
+..+..+........-..+|+++++++|+.|...++|.+...+ ....+.||...|++++|.|- -.-+||+|.|-++++
T Consensus 308 ~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 308 VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 3334333222222344579999999999999999999887654 34557899999999999884 345777799999999
Q ss_pred ccccccc
Q psy4754 271 EESKNRY 277 (304)
Q Consensus 271 ~~~~~~~ 277 (304)
|++.++.
T Consensus 388 W~l~~~l 394 (720)
T KOG0321|consen 388 WRLSNGL 394 (720)
T ss_pred EeccCch
Confidence 9984433
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=183.38 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=185.7
Q ss_pred CCCceeEEeeccccce-Eeeeecc---ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee---cCCcCcEEE
Q psy4754 1 MGKNHCRLFDLRADKE-VACYKKD---SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSC 73 (304)
Q Consensus 1 ~~~~~v~~wd~~~~~~-~~~~~~~---~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~---~~h~~~V~~ 73 (304)
+|+..++.|+...+.. ...+... .....+++++.++.|++.+.|++.|+|-+|++..|...+.+ ..|+.+|++
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~g 498 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTG 498 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeE
Confidence 4677899999988743 2222211 12234899999999999999999999999999999888777 589999999
Q ss_pred EEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc
Q psy4754 74 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 74 l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
++.-.-++.++|++.||.+ ..||+.....+..++... ++..+.++.....++.+..|-.|+++|+.+...++.+.
T Consensus 499 la~D~~n~~~vsa~~~Gil--kfw~f~~k~l~~~l~l~~---~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGADGIL--KFWDFKKKVLKKSLRLGS---SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred EEecCCCceEEEccCcceE--EEEecCCcceeeeeccCC---CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 9998888899999999986 689998877665554432 34567778888899999999999999999999999999
Q ss_pred CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-CcEEEEeC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-YTINVWDS 231 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-~~i~iwd~ 231 (304)
||.+.|++++|||||+++++++.|++| ++||+.++..+-.+.... +++++.|+|+|.+||+...| .-|.+|.-
T Consensus 574 gh~nritd~~FS~DgrWlisasmD~tI--r~wDlpt~~lID~~~vd~---~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISASMDSTI--RTWDLPTGTLIDGLLVDS---PCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ccccceeeeEeCCCCcEEEEeecCCcE--EEEeccCcceeeeEecCC---cceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 999999999999999999999999996 799999998887776553 56899999999999999988 66999963
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=159.46 Aligned_cols=226 Identities=16% Similarity=0.208 Sum_probs=164.0
Q ss_pred CCceeEEeeccccce-EeeeeccccccceeEEEEcC--CCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKE-VACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~-~~~~~~~~~~~~i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
.|++|||+....+.. .....+..|...|..++|.. -|.+||+++.||.|.||.-..++ .......|+..|.+++|
T Consensus 31 SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~w 110 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAW 110 (299)
T ss_pred CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecc
Confidence 488999999988743 33334445555599999975 58999999999999999988774 33345679999999999
Q ss_pred CCCC--CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC---C-----------CEEEEEeCCCeEEE
Q psy4754 77 SPDG--TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS---G-----------RLLFAGYNDYTINV 140 (304)
Q Consensus 77 s~d~--~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~---~-----------~~l~sg~~dg~i~i 140 (304)
.|.+ -.|+.++.||.|.+.-++-..+.... .....+..+++++.+.|. | +.|++|+-|+.|+|
T Consensus 111 apheygl~LacasSDG~vsvl~~~~~g~w~t~-ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 111 APHEYGLLLACASSDGKVSVLTYDSSGGWTTS-KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKI 189 (299)
T ss_pred cccccceEEEEeeCCCcEEEEEEcCCCCccch-hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceee
Confidence 9964 47889999999754434333111111 111123456788888775 3 46999999999999
Q ss_pred ecCCccc--cceeccCcccceeEEEEcCCC----cEEEEeecCCceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcC
Q psy4754 141 WDSLKCC--RVNHLMGHENRVSCLQVSPDG----TAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSV 212 (304)
Q Consensus 141 wd~~~~~--~~~~~~~h~~~v~~v~~sp~~----~~las~s~d~~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~ 212 (304)
|+....+ .-.++.+|.+.|..+++.|.- ..+|+||+|+++ .+|..+.. ....++.. ..+..+..+.||+
T Consensus 190 W~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v--iIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 190 WKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV--IIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSL 266 (299)
T ss_pred eecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE--EEEEecCccCcccccccc-cCCcceEEEEEec
Confidence 9876532 234588999999999999954 369999999997 46765422 11112111 1223578999999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q psy4754 213 SGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~ 231 (304)
.|+.|+.++.|+.|.+|..
T Consensus 267 sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cccEEEEecCCcEEEEEEe
Confidence 9999999999999999963
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=175.85 Aligned_cols=277 Identities=20% Similarity=0.245 Sum_probs=200.5
Q ss_pred CceeEEeeccccce----Eeeeeccc-cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEE
Q psy4754 3 KNHCRLFDLRADKE----VACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCL 74 (304)
Q Consensus 3 ~~~v~~wd~~~~~~----~~~~~~~~-~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l 74 (304)
|+++-+|.+..+.- ........ ...+...+-|+|++..+++-+..|..++|..... .....+.||-+.|+.+
T Consensus 288 DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv 367 (764)
T KOG1063|consen 288 DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDV 367 (764)
T ss_pred CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceee
Confidence 78899998887621 12222121 1223688999999999999999999999994331 2344568999999999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeC-CCeeEeEE-eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc------
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLR-ADKEVACY-KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC------ 146 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~-~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~------ 146 (304)
+|.|.|++|+|.|.|.|- |++--. ....-+.+ ++.-+-+..++++|-+....|++|.+...+|+++..+.
T Consensus 368 ~W~psGeflLsvs~DQTT--RlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 368 DWDPSGEFLLSVSLDQTT--RLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred eecCCCCEEEEeccccce--eeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence 999999999999999995 454322 11111211 11112234567777776667888888888888863200
Q ss_pred -------------------------------------cc---------------------------------ceeccCcc
Q psy4754 147 -------------------------------------CR---------------------------------VNHLMGHE 156 (304)
Q Consensus 147 -------------------------------------~~---------------------------------~~~~~~h~ 156 (304)
.. +..+.||.
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 00 01234788
Q ss_pred cceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
..|.+++.+|+++++||+...+. --|++|+..+-.....+..|+ ..|+.++|||||++|++.+.|+++.+|...+
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS--LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc--eEEEEEEECCCCcEEEEeecCceEEeeeeec
Confidence 99999999999999999875443 126899988776666666665 4689999999999999999999999997643
Q ss_pred cee----eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 234 CCR----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 234 ~~~----~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
... ....+.|..-|++..|+|++.+|||+|+|+++++|...+.-..|+-+
T Consensus 604 ~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 604 DIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred ccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 321 23366799999999999999999999999999999765543344443
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=171.98 Aligned_cols=256 Identities=18% Similarity=0.219 Sum_probs=199.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee-ecCC-cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGH-ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~-~~~h-~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.-.|.++||+.+.+.||.+-.||.|.||++..+..... +.++ +..|.+|+|+ ++..|+|.+.+++| .-||+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i--~EwDl~~lk 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSI--TEWDLHTLK 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceE--EEEecccCc
Confidence 33589999999999999999999999999988765443 4555 4579999999 46678888889985 689999988
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc--eeccCcccceeEEEEcCCCcEEEEeecCCceE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
+...+..... .+-+++.+|.+..++.|+.||.+...+....... ..+...+++|.+++|+|++..+++|+.|+.|
T Consensus 102 ~~~~~d~~gg--~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I- 178 (691)
T KOG2048|consen 102 QKYNIDSNGG--AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI- 178 (691)
T ss_pred eeEEecCCCc--ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE-
Confidence 8776655432 4668889999999999999998888776554322 2345567899999999999999999999975
Q ss_pred EEEeeecCCceEEEe-----ecCc-eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 182 CRLFDLRADKEVACY-----KKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 182 i~~~d~~~~~~~~~~-----~~~~-~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
++||+..+..+... .... ...-++++.|-.+ ..|++|.+-|+|.+||...+..+..+.-|.+.|.||+.+++
T Consensus 179 -riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 179 -RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred -EEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 79999888765511 1111 1234678888844 56789999999999999999999999999999999999999
Q ss_pred CCEEEEeecCCeeeeccccccchhheeeccccCC
Q psy4754 256 GTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKP 289 (304)
Q Consensus 256 g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~ 289 (304)
+.++.+++.|+.|.-+-......++...++-..+
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h 290 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH 290 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCC
Confidence 9999999999988765444443344444443333
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=171.89 Aligned_cols=247 Identities=17% Similarity=0.233 Sum_probs=189.9
Q ss_pred CCCceeEEeeccccc-eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 1 MGKNHCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 1 ~~~~~v~~wd~~~~~-~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
.||+.+++|.=.... +++...+.. .....|++......++++|+..+.|+|||+......+.+++|...|+++.++..
T Consensus 54 ~gdk~~~~~~K~g~~~~Vp~~~k~~-gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~ 132 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGKTPEVPRVRKLT-GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT 132 (673)
T ss_pred CCceeEEEecccCCCCccceeeccc-cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC
Confidence 378889999766541 122222221 112344444444589999999999999999866677788999999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEE-EEeCCCeEEEecCCccccceec-cCccc
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLKCCRVNHL-MGHEN 157 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~-~~h~~ 157 (304)
..+|++++..|.| .+..+.++.....+.... ...+.-+.|++..++++ +++.+|.|.+||.....++..+ ..|..
T Consensus 133 DeyiAsvs~gGdi--iih~~~t~~~tt~f~~~s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA 209 (673)
T KOG4378|consen 133 DEYIASVSDGGDI--IIHGTKTKQKTTTFTIDS-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA 209 (673)
T ss_pred cceeEEeccCCcE--EEEecccCccccceecCC-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence 9999999998886 467777666555554432 12345788999877655 4888999999998877776664 57999
Q ss_pred ceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-Cce
Q psy4754 158 RVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCC 235 (304)
Q Consensus 158 ~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~ 235 (304)
+...++|+|.. .+|++.+.|..| .+||.+.-+...++-.. .+..+++|+++|.+|++|...|.|..||++ +..
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki--~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKI--NIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred CcCcceecCCccceEEEecccceE--EEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 99999999954 678899999985 68999876555444333 245899999999999999999999999986 456
Q ss_pred eeEEeeccccceEEEEEccCC
Q psy4754 236 RVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 236 ~~~~~~~h~~~i~~l~~sp~g 256 (304)
++..+..|...|++|+|-|-.
T Consensus 285 Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 285 PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEeeecccceeEEEeeecc
Confidence 788888999999999998864
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-23 Score=177.06 Aligned_cols=259 Identities=19% Similarity=0.253 Sum_probs=184.1
Q ss_pred eeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC--------ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCc
Q psy4754 20 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91 (304)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~--------~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~ 91 (304)
+...++...|++++|+|....|++|+.||++++|++.+ .+++.+|++|.++|.|+++++++++++||+.|++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 33445555689999999999999999999999999832 3578889999999999999999999999999999
Q ss_pred eEEEEeeeCCC-eeEeEEec-------cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc--ceeccCcccceeE
Q psy4754 92 LRCRLFDLRAD-KEVACYKK-------DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLMGHENRVSC 161 (304)
Q Consensus 92 i~~~~wd~~~~-~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~ 161 (304)
| +.|++... .+...+.. .++...+-.+++|+....|++++.||+++.|+.....+ ......| +...+
T Consensus 368 I--~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~-g~Pls 444 (577)
T KOG0642|consen 368 I--RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH-GYPLS 444 (577)
T ss_pred e--eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcccc-CCcce
Confidence 6 57876521 11111100 01112345778999999999999999999999766555 2122223 34456
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce-----eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-----LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
|++-...-..+..+..... --+++....+.+..+..... ...++.+..+|.+.+.+++.+|++|+++|..++..
T Consensus 445 vd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred EeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 6664332111111111100 01334444444443322111 12356788899999999999999999999999999
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeec
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRS 284 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~ 284 (304)
++....|...++++++.|+|.+|++|++|+.+++|.++... +..++
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~--~~~es 569 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT--CVLES 569 (577)
T ss_pred chheeeccceecceeecCCCceEEeecCCceeehhhccchh--eeecc
Confidence 99999999999999999999999999999999999765443 44444
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=162.17 Aligned_cols=213 Identities=22% Similarity=0.229 Sum_probs=163.4
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-------------------------
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK------------------------- 57 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~------------------------- 57 (304)
+++|-||+..+.+...... .|..+|.++....+|.+|- |+.|..|..||-.-
T Consensus 266 ~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di 342 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDI 342 (626)
T ss_pred CceEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcE
Confidence 5789999998887655444 6677799999998987775 99999999999310
Q ss_pred -----------ce----eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEE
Q psy4754 58 -----------CC----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122 (304)
Q Consensus 58 -----------~~----~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (304)
|. ......+|.++.+.++.+|+.++++|++.|+.+ ++|+ ..+.+..... .+++.+++|
T Consensus 343 ~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v--~lW~--~~k~~wt~~~---~d~~~~~~f 415 (626)
T KOG2106|consen 343 LVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHV--RLWN--DHKLEWTKII---EDPAECADF 415 (626)
T ss_pred EEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceE--EEcc--CCceeEEEEe---cCceeEeec
Confidence 00 011234788899999999999999999999995 7899 4445444332 234678999
Q ss_pred cCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE-EeecCce
Q psy4754 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA-CYKKDSI 201 (304)
Q Consensus 123 s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~-~~~~~~~ 201 (304)
+|.| .++.|+..|...+.|.++...+..... +.++++|.|+|+|.+||.||.|+.|. +|-+....... .......
T Consensus 416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iy--iy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIY--IYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEE--EEEECCCCcEEEEeeeecC
Confidence 9999 899999999999999988665554444 78999999999999999999999974 56554333222 2222222
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.+++.+.||+|++++.+.+.|-.|..|.
T Consensus 492 -s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 492 -SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred -ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 5678999999999999999999999995
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=175.67 Aligned_cols=246 Identities=17% Similarity=0.191 Sum_probs=188.7
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|+.||+|+.....+.|..... ....|.+++ ..+..|++|+.+++|.+|....++.-..+.-..-++++++++.+|++
T Consensus 34 dg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~ 110 (933)
T KOG1274|consen 34 DGDIRKWKTNSDEEEPETIDI-SGELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKM 110 (933)
T ss_pred CCceEEeecCCcccCCchhhc-cCceeEEEe--ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcE
Confidence 567999999998544322211 122255554 45668999999999999998877654334445678999999999999
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--------
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-------- 154 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------- 154 (304)
++.||.|-.| ++-+..+..+...++.+. ..+.++.|+|.+++||+.+-||.|++||+.++....++.+
T Consensus 111 iaagsdD~~v--K~~~~~D~s~~~~lrgh~--apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 111 IAAGSDDTAV--KLLNLDDSSQEKVLRGHD--APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred EEeecCceeE--EEEeccccchheeecccC--CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 9999999986 467777776666666544 3578999999999999999999999999987765544432
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
....+..++|+|++..++....|+.| .+|+..+.+....+........++.+.|+|.|+|||++.-||.|.|||..+-
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~~V--kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDNTV--KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCCeE--EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 12345678999998888888889996 5899888888777776655455789999999999999999999999998872
Q ss_pred eeeEEeeccccceEEEEEccCCCEEEE
Q psy4754 235 CRVNHLMGHENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~sp~g~~las 261 (304)
++ ......|.|++|-|+...+-.
T Consensus 265 ~~----~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 265 ER----HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred hh----ccccceeEEEecCCCCCeeEE
Confidence 11 123468999999999876543
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=168.38 Aligned_cols=224 Identities=20% Similarity=0.268 Sum_probs=163.0
Q ss_pred CceeEEeeccccce--------EeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCce-------eeeeecC
Q psy4754 3 KNHCRLFDLRADKE--------VACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCC-------RVNHLMG 66 (304)
Q Consensus 3 ~~~v~~wd~~~~~~--------~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~-------~~~~~~~ 66 (304)
.+.|.|||...-.- .|.+....|...-+++.|++.. -.|++|+.|++|++||+.... +...+.+
T Consensus 146 ~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~ 225 (422)
T KOG0264|consen 146 SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG 225 (422)
T ss_pred CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec
Confidence 34578888766421 1222222222225679998864 478899999999999986432 2345679
Q ss_pred CcCcEEEEEECCCC-CeEEEEeCCCceEEEEeeeCC--CeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEec
Q psy4754 67 HENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRA--DKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWD 142 (304)
Q Consensus 67 h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd 142 (304)
|.+.|..++|++-. ..+.+++.|+.+ .+||+++ .+.....+.+ ...+.+++|+|-+. .||+|+.|++|.+||
T Consensus 226 h~~~VeDV~~h~~h~~lF~sv~dd~~L--~iwD~R~~~~~~~~~~~ah--~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 226 HEDVVEDVAWHPLHEDLFGSVGDDGKL--MIWDTRSNTSKPSHSVKAH--SAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred CCcceehhhccccchhhheeecCCCeE--EEEEcCCCCCCCccccccc--CCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 99999999999954 578889999885 6899995 3333333333 23578999998655 567789999999999
Q ss_pred CCcc-ccceeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEE------------EeecCceeeeeeEE
Q psy4754 143 SLKC-CRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVA------------CYKKDSILFGATSV 208 (304)
Q Consensus 143 ~~~~-~~~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~------------~~~~~~~~~~~~~~ 208 (304)
+++. .++.++.+|.+.|..|.|+|.. ..+|+++.|+.+ .+||+......+ .|...++...|+.+
T Consensus 302 lRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl--~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 302 LRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL--NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF 379 (422)
T ss_pred chhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE--EEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence 9874 4677899999999999999975 578899999996 589985432211 12233334568899
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEeCC
Q psy4754 209 DFSVSGRL-LFAGYNDYTINVWDSL 232 (304)
Q Consensus 209 ~~s~~g~~-l~sg~~d~~i~iwd~~ 232 (304)
.|+|.... |++.++|+.+.||+..
T Consensus 380 sWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCCCCCeEEEEecCCceEEEeecc
Confidence 99999886 6668899999999865
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=170.59 Aligned_cols=270 Identities=22% Similarity=0.266 Sum_probs=197.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCC---EEEEeeCCCcEEEEeCCCce---------------------
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR---LLFAGYNDYTINVWDSLKCC--------------------- 59 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~---~l~tg~~dg~v~iwd~~~~~--------------------- 59 (304)
..|.+|.-.+++.........|..-|.+++|...+. +||++|+|..||||.+.-+.
T Consensus 169 ~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~ 248 (764)
T KOG1063|consen 169 FVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFM 248 (764)
T ss_pred eEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceee
Confidence 346677666666655555566665699999986543 88999999999999953111
Q ss_pred ---eee-------eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe-----ccceeeceeeeEEcC
Q psy4754 60 ---RVN-------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK-----KDSILFGATSVDFSV 124 (304)
Q Consensus 60 ---~~~-------~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~s~ 124 (304)
.+. .+.||.+||.++.|+|.+..|+|+|.|++. -+|.....+-+..-. ......+.-..-|+|
T Consensus 249 ~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksm--iiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~ 326 (764)
T KOG1063|consen 249 ILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSM--IIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP 326 (764)
T ss_pred eeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcce--EEEecCCccceEEEEEEeecccccccceeeEEEcC
Confidence 111 234999999999999999999999999995 688876654333221 111111234677999
Q ss_pred CCCEEEEEeCCCeEEEecCCc---cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeec-------------
Q psy4754 125 SGRLLFAGYNDYTINVWDSLK---CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR------------- 188 (304)
Q Consensus 125 ~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~------------- 188 (304)
++..+++-+..|..++|.... ........||.+.|..|+|+|.|+++.+.|.|++-+ ++-.-
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTR--lFa~wg~q~~wHEiaRPQ 404 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTR--LFARWGRQQEWHEIARPQ 404 (764)
T ss_pred CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccccee--eecccccccceeeecccc
Confidence 999999999999999997322 123344679999999999999999999999999853 33211
Q ss_pred ----------------------CCceEEEeecC-----------------------------------------------
Q psy4754 189 ----------------------ADKEVACYKKD----------------------------------------------- 199 (304)
Q Consensus 189 ----------------------~~~~~~~~~~~----------------------------------------------- 199 (304)
..+.+..+...
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 00011111100
Q ss_pred --------------------------------------ceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCcee
Q psy4754 200 --------------------------------------SILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCCR 236 (304)
Q Consensus 200 --------------------------------------~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~~ 236 (304)
.+...+.+++.+|+|+++|++..- --|++|+..+...
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 000247789999999999997643 2488999988888
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+..+.+|.-.|+.|+|||||++|++.|+|+++.+|...++.
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence 88899999999999999999999999999999999765544
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=172.55 Aligned_cols=267 Identities=19% Similarity=0.263 Sum_probs=188.8
Q ss_pred CCceeEEeeccccceEeeeecc-ccccceeEEEE------------cCCCCEEEEeeCCCcEEEEeCCCce---e-----
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD-SILFGATSVDF------------SVSGRLLFAGYNDYTINVWDSLKCC---R----- 60 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~-~~~~~i~~~~~------------~~~g~~l~tg~~dg~v~iwd~~~~~---~----- 60 (304)
+|..+.|||+.+-+.+.+.... .|...|..+.- -|.+ -++|+++|++||+|++..+. .
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNi 422 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNI 422 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeeccc
Confidence 5778999999885433211110 11111222221 1223 47799999999999975421 0
Q ss_pred -----ee------------------------eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc
Q psy4754 61 -----VN------------------------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 111 (304)
Q Consensus 61 -----~~------------------------~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~ 111 (304)
++ ........|++++++|+|++|++|-.-|++ +++++..-..+...+.+
T Consensus 423 ls~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl--rVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 423 LSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL--RVYDLQELEYTCFMEAH 500 (1080)
T ss_pred chhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCce--EEEEehhhhhhhheecc
Confidence 00 000122469999999999999999877775 78999765554444443
Q ss_pred ceeeceeeeEEcC---CCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCC--cEEEEeecCCceEEEEe
Q psy4754 112 SILFGATSVDFSV---SGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDG--TAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 112 ~~~~~~~~~~~s~---~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~--~~las~s~d~~i~i~~~ 185 (304)
.. -+.++.|+. ..++|++++.|..|+++|...+ ..+.++-+|...|++|.|-..| ..+++|+.|+.+ +|
T Consensus 501 es--EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi---mF 575 (1080)
T KOG1408|consen 501 ES--EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI---MF 575 (1080)
T ss_pred cc--eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh---he
Confidence 32 356788874 3568999999999999997653 4567889999999999998776 679999999986 34
Q ss_pred eecC-CceEEEeecCc---eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec---cccceEEEEEccCCCE
Q psy4754 186 DLRA-DKEVACYKKDS---ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVSCLQVSPDGTA 258 (304)
Q Consensus 186 d~~~-~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~---h~~~i~~l~~sp~g~~ 258 (304)
+... ......+..+. .......++..|..+++++++.|++|+||++..++..+.|+| |++....+.+.|.|.|
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY 655 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE
Confidence 3322 00011111110 012246788999999999999999999999999999999887 6677888999999999
Q ss_pred EEEeecCCeeeecccccc
Q psy4754 259 FSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~ 276 (304)
||+.-.|+++-++|+-.+
T Consensus 656 ~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 656 LATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEEeecCCceEEEEeccc
Confidence 999999999999987553
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=166.81 Aligned_cols=245 Identities=23% Similarity=0.251 Sum_probs=185.6
Q ss_pred ceeEEEEcCCC--CEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEECCCC-CeEEEEeCCCceEEEEeeeC
Q psy4754 28 GATSVDFSVSG--RLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 28 ~i~~~~~~~~g--~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~ 100 (304)
.|++++|+|.. +++|+|+.-|+|=+||..+. ..+..+..|..+|.++.|+|.. ..+++.|.||+| ++-|+.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti--R~~D~~ 265 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI--RLQDFE 265 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee--eeeeec
Confidence 38999999975 58899999999999999532 2344566899999999999954 589999999996 678887
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-ceeccCcccceeEEEEcCCC-cEEEEeecCC
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSPDG-TAFSSGSWDT 178 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~sp~~-~~las~s~d~ 178 (304)
.......+..+.......++.|+.+...++.+..=|...+||.++... ...+.-|...|.+|+++|.. ..+||+|.|+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 654433343322233456788999999999998888999999987654 55667788899999999965 5699999999
Q ss_pred ceEEEEeeecCCceEE--EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC----CCceeeEEeeccc----cc--
Q psy4754 179 TLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS----LKCCRVNHLMGHE----NR-- 246 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~----~~~~~~~~~~~h~----~~-- 246 (304)
+. ++||+|...... .+..-.+...|++..|||++-.|++.+.|..|+|||. ....++.++. |+ .+
T Consensus 346 T~--kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT 422 (498)
T KOG4328|consen 346 TA--KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLT 422 (498)
T ss_pred ce--eeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccccccc
Confidence 96 589998643222 1222222346789999999888999999999999997 3333333332 32 22
Q ss_pred eEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 247 VSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 247 i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
....+|.|+-.+++.|-+-+.|.+++...+.
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 3445899999999999999999999876655
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-22 Score=163.40 Aligned_cols=208 Identities=20% Similarity=0.307 Sum_probs=154.8
Q ss_pred CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC----------------eeEeEEeccceeeceeeeEEcCC-CCE
Q psy4754 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD----------------KEVACYKKDSILFGATSVDFSVS-GRL 128 (304)
Q Consensus 66 ~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~----------------~~~~~~~~~~~~~~~~~~~~s~~-~~~ 128 (304)
+|.+.+..+..++-++-.++++|.-.-+|.+||+... +++..+..+.. -.-.++|||- ...
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~--EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG--EGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc--cceeeecccccccc
Confidence 5777777777777777677777766666789998631 11111111111 1236788883 224
Q ss_pred EEEEeCCCeEEEecCCccc---cceeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeee
Q psy4754 129 LFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 204 (304)
Q Consensus 129 l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~ 204 (304)
+++|.-.+.|++|...++. -...+.+|+.+|..++|||.. ..|||||.|++| ++||+|.+....+.....+...
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI--rIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI--RIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE--EEEEecCCCccceeEeeccCCc
Confidence 7888888999999876643 123467899999999999966 579999999996 7999998743222222333357
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCC---ceeeEEeeccccceEEEEEcc-CCCEEEEeecCCeeeeccccccc
Q psy4754 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLK---CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|+.+.|+....+||+|+.||+++|||++. ++++.+++.|..+|+||.|+| +...|++++.|..|.+||+.-+-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 89999999999999999999999999753 567889999999999999999 45788899999999999985433
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=158.68 Aligned_cols=267 Identities=19% Similarity=0.196 Sum_probs=196.2
Q ss_pred CCCceeEEeeccccceEeeeec---cccccceeEEEEcCC----CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEE
Q psy4754 1 MGKNHCRLFDLRADKEVACYKK---DSILFGATSVDFSVS----GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 73 (304)
Q Consensus 1 ~~~~~v~~wd~~~~~~~~~~~~---~~~~~~i~~~~~~~~----g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 73 (304)
.|++++-+|+...+-....+|. +.+.-....++|+-+ ..++|+|+.-|.|+|.|+.+++..+.+.+|.+.|..
T Consensus 61 vG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINe 140 (385)
T KOG1034|consen 61 VGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINE 140 (385)
T ss_pred eCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchh
Confidence 3788899998888753333333 223334677777653 468999999999999999999999999999999999
Q ss_pred EEECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEec-cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc----
Q psy4754 74 LQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---- 147 (304)
Q Consensus 74 l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~---- 147 (304)
|.+.|+. ++++|+|.|.++ |+|++.+...+..+-. +.+...+.+++|++++.++++++.|..+++|++...+
T Consensus 141 ik~~p~~~qlvls~SkD~sv--RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSASKDHSV--RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred hhcCCCCCcEEEEecCCceE--EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 9999964 799999999995 7999999988877642 2233457899999999999999999999999986211
Q ss_pred ---------------------cce---eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecC-Cce----------
Q psy4754 148 ---------------------RVN---HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKE---------- 192 (304)
Q Consensus 148 ---------------------~~~---~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~-~~~---------- 192 (304)
.+. +-.-|..+|-|+.|- |+++++=|.++.|. .|.... .+.
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~--~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIV--CWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEE--EEecchhhhhhhccCCCccc
Confidence 000 112477788888775 46888888888864 665521 111
Q ss_pred ---EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee--EEeec--cccceEEEEEccCCCEEEEeecC
Q psy4754 193 ---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMG--HENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 193 ---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~--~~~~~--h~~~i~~l~~sp~g~~lasgs~D 265 (304)
+..+.......-....+|.|-++.||.|.+.|+|.+||+...++. .++.- -...|...+||.||..|+..-.|
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 111111111111234456788999999999999999998765552 22221 23678999999999999999999
Q ss_pred Ceeeeccc
Q psy4754 266 TTLRDEES 273 (304)
Q Consensus 266 ~~i~~~~~ 273 (304)
++|-=||.
T Consensus 375 ~~Vwrwdr 382 (385)
T KOG1034|consen 375 GTVWRWDR 382 (385)
T ss_pred CcEEEEEe
Confidence 99988864
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=162.58 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=178.4
Q ss_pred eEEeeccccceEeeeecccc-ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE
Q psy4754 6 CRLFDLRADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 84 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~ 84 (304)
...||+.+.++...-+.... ...+.....+|++++|+..+..|.|.+-...+++.+.+++ -.+.|..+.|+.|++.|+
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELL 360 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEE
Confidence 45789888765432222211 2236677889999999999999999999999999888875 467899999999999999
Q ss_pred EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc------cccceeccCcccc
Q psy4754 85 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK------CCRVNHLMGHENR 158 (304)
Q Consensus 85 sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~------~~~~~~~~~h~~~ 158 (304)
.++.+|. |++||++....++.+..+..+ +.++++.++++.+||+|+..|.|.|||..+ .+++.++..-...
T Consensus 361 ~~~~~Ge--V~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 361 ASGGTGE--VYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEcCCce--EEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 8888987 589999999888888877654 456788899999999999999999999543 4566677777789
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc-eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
|++|+|+||.+++|.||.-..=.+++.-+.+......|+... ....+++++|||.+-+||.|..+|.+.+|.+
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 999999999999998886443335788887777666665432 2345899999999999999999999999964
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=166.81 Aligned_cols=255 Identities=15% Similarity=0.249 Sum_probs=194.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
-++++-+||++.|..+-.+. .|...|+|++|+.||+.+|+|+.|..|.+|+..---.+ -..|.+.|.|+.|+|-..
T Consensus 31 Ag~rlliyD~ndG~llqtLK--gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h 106 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITH 106 (1081)
T ss_pred cCCEEEEEeCCCcccccccc--cccceEEEEEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHH
Confidence 36789999999997764433 44556999999999999999999999999997421111 146999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc--ceeccCcccce
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLMGHENRV 159 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v 159 (304)
.|+|++...- .+|...+.... +.....-+++++|..||++++.|..+|+|.+-+...... +....|.+.+|
T Consensus 107 ~LasCsLsdF---glWS~~qK~V~----K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 107 QLASCSLSDF---GLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPI 179 (1081)
T ss_pred Hhhhcchhhc---cccChhhhhHH----hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCc
Confidence 9999986543 57876554322 222233467899999999999999999999987543333 33345678899
Q ss_pred eEEEEcCCC-----cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 160 SCLQVSPDG-----TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 160 ~~v~~sp~~-----~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
.+++|+|.. .+++...+.+++. .+.+.. +.+.. .....+...++.+.|+|+|++.|+.|+.+++|. ..|
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLS--Fy~LsG-~~Igk--~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G 253 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLS--FYQLSG-KQIGK--DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG 253 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeE--EEEecc-eeecc--cccCCCCchhheeccCCcEEEEccCCCceEEEe-ecC
Confidence 999999953 3577777777753 444432 22221 122234567899999999999999999999996 667
Q ss_pred eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 235 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.++.+......+|+.++..|+++.++.|-.|++|.-+++
T Consensus 254 vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 888888778889999999999999999999999975544
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=175.71 Aligned_cols=245 Identities=15% Similarity=0.209 Sum_probs=181.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee----eecCCc---CcEEEEEECC-CCCeEEEEeCCCceEEEEeeeC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN----HLMGHE---NRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~----~~~~h~---~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
+.++...++-..++.++.. .++||..+...... .++.-. -....++|.. +.++|++++..|.| -+||+.
T Consensus 42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i--~vWdln 118 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI--SVWDLN 118 (839)
T ss_pred cceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE--EEEecC
Confidence 5677777877777766655 78888876432111 111111 1234567765 56899999999986 589997
Q ss_pred C---CeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEee
Q psy4754 101 A---DKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 175 (304)
Q Consensus 101 ~---~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s 175 (304)
. .+++..+..+ ...++++.|++. ..+|++|++||+|++||++......++.+...+|..|+|+| .+..|+++.
T Consensus 119 k~~rnk~l~~f~EH--~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEH--ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccchhhhHhhhh--ccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 5 3333334333 346789999875 45788999999999999998888888888889999999999 457899988
Q ss_pred cCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee--eEEeeccccceEEEEE
Q psy4754 176 WDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLMGHENRVSCLQV 252 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~--~~~~~~h~~~i~~l~~ 252 (304)
..|.+ .+||+|.... ...+.++. .+|.++.|+|++.+||+|+.|++|+|||....+. +.++. -..+|.+|+|
T Consensus 197 dsG~l--qlWDlRqp~r~~~k~~AH~--GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkW 271 (839)
T KOG0269|consen 197 DSGYL--QLWDLRQPDRCEKKLTAHN--GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKW 271 (839)
T ss_pred CCceE--EEeeccCchhHHHHhhccc--CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeee
Confidence 88885 6999997653 33333443 5789999999999999999999999999764432 33332 3479999999
Q ss_pred ccCC-CEEEEeec--CCeeeeccccccchhheee
Q psy4754 253 SPDG-TAFSSGSW--DTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 253 sp~g-~~lasgs~--D~~i~~~~~~~~~~~~~~~ 283 (304)
-|+. .+||++|+ |..|.+||.+.+|.+|..-
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceee
Confidence 9975 46888875 8899999999999888654
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=154.29 Aligned_cols=204 Identities=22% Similarity=0.308 Sum_probs=156.6
Q ss_pred cCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEe---------E----EeccceeeceeeeEEcC-CCCEE
Q psy4754 65 MGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVA---------C----YKKDSILFGATSVDFSV-SGRLL 129 (304)
Q Consensus 65 ~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~---------~----~~~~~~~~~~~~~~~s~-~~~~l 129 (304)
+.|.+.|.+|.+-+ .|++++||+.|+.+ -+||+....... + -..+.+.+++.++.|-| |...|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi--~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSI--AVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccE--EEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 45889999999987 68999999999996 689997544211 1 11233446677777665 56688
Q ss_pred EEEeCCCeEEEecCCccccceeccCcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeee
Q psy4754 130 FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGAT 206 (304)
Q Consensus 130 ~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~ 206 (304)
.+++.|.++++||..+-+....|. .++.|.+-+++|= ..++|+|..|.. |++-|+.++.....+.++. .+|.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~--VrLCDi~SGs~sH~LsGHr--~~vl 192 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQ--VRLCDIASGSFSHTLSGHR--DGVL 192 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCc--EEEEeccCCcceeeecccc--CceE
Confidence 889999999999998876655443 3456666677773 446778877766 5799999999888887776 4689
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEeCCCc-ee--------------eEEeeccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 207 SVDFSVSGRL-LFAGYNDYTINVWDSLKC-CR--------------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 207 ~~~~s~~g~~-l~sg~~d~~i~iwd~~~~-~~--------------~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
++.|+|..++ |++|+.||.|++||+.+. .+ +.+-..|.+.|+.++|+.||.++++.+.|..+|+
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9999999987 667999999999997643 11 2223358889999999999999999999999999
Q ss_pred ccccc
Q psy4754 271 EESKN 275 (304)
Q Consensus 271 ~~~~~ 275 (304)
|+..+
T Consensus 273 wn~~~ 277 (397)
T KOG4283|consen 273 WNMES 277 (397)
T ss_pred eeccc
Confidence 98754
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=157.92 Aligned_cols=259 Identities=17% Similarity=0.149 Sum_probs=192.9
Q ss_pred CceeEEeeccccceE-eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEV-ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~-~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
|++|.|||+..+=.+ +.++. -..-.|-+++|++.++ |.+.+-+|+|.-||+.++++...+..-.+.|++++.+|.+.
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENT 123 (691)
T ss_pred CCcEEEEccCCCceeeEEEec-CCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccc
Confidence 678999999997332 22222 1122389999996555 55788999999999999999888888889999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee----c---cC
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH----L---MG 154 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~---~~ 154 (304)
.++-|+.||.+ ...+...+.............-+.++.|++++..+++|+.||.|++||..++..+.. + ..
T Consensus 124 ~l~IgcddGvl--~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 124 ILAIGCDDGVL--YDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK 201 (691)
T ss_pred eEEeecCCceE--EEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence 99999999953 455555443322111111112356899999999999999999999999988765541 1 11
Q ss_pred -cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 155 -HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 155 -h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
-..-|++|.|-.++ .+++|...|+| ..||...+..++.++.+. ..|.+++..+++.++++++-|++|.-|...+
T Consensus 202 ~~~~iVWSv~~Lrd~-tI~sgDS~G~V--~FWd~~~gTLiqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 202 REPTIVWSVLFLRDS-TIASGDSAGTV--TFWDSIFGTLIQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred CCceEEEEEEEeecC-cEEEecCCceE--EEEcccCcchhhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 22347888887666 67877666665 689999888776665554 4679999999999999999999988887554
Q ss_pred ce----eeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 234 CC----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 234 ~~----~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
.. .......|...|.+++..++ .+.+|+.|.++.+-=
T Consensus 277 ~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 277 NKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred CccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 42 23334568889999999887 899999999987653
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=159.60 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=151.3
Q ss_pred eeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCee-E
Q psy4754 29 ATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKE-V 105 (304)
Q Consensus 29 i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~-~ 105 (304)
|-+++|..+ ...||+||.|.+|++||+.++++..++..|.++|.+++|+| ....|++||.|+++ .+.|.+.... .
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V--~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTV--ALKDCRDPSNSG 323 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceE--EeeeccCccccC
Confidence 567777654 46899999999999999999999999999999999999999 46799999999995 6889884222 2
Q ss_pred eEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCC-cEEEEeecCCceEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRC 182 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i 182 (304)
..++... .+-.++|.+... .++++..||+|+-+|++.. +++.++..|.++|.++++++.. ..++|+|.|+.++
T Consensus 324 ~~wk~~g---~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk- 399 (463)
T KOG0270|consen 324 KEWKFDG---EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK- 399 (463)
T ss_pred ceEEecc---ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE-
Confidence 2233222 244677777544 5677888999999999876 7788999999999999998865 4788999999974
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCceee
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~sg~~d~~i~iwd~~~~~~~ 237 (304)
+|++.......+....-......+.++.|+-.+ |+.|+..+.++|||+.+...+
T Consensus 400 -lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 -LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred -EEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 777655443222211111112356677787665 666888888999998776544
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=155.82 Aligned_cols=154 Identities=22% Similarity=0.229 Sum_probs=122.5
Q ss_pred ccccc-eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCce---------eeeeecCCcCcEEEEEECCCCCeEEEEeCCCce
Q psy4754 24 SILFG-ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCC---------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 92 (304)
Q Consensus 24 ~~~~~-i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i 92 (304)
.|.+. +.++.|.++.. .++||+.|..|+||-++.++ ....+..|...|.++.|+|+|+.|+||+.++.+
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 33444 89999998876 99999999999999976432 344567899999999999999999999999996
Q ss_pred EEEEeeeCCCee------------EeEEec--cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 93 RCRLFDLRADKE------------VACYKK--DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 93 ~~~~wd~~~~~~------------~~~~~~--~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
.+|-....+. .+...+ ..+...+-.++|++++.++++++-|..+++||+..++.+..+.+|...
T Consensus 90 --~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 90 --FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred --EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 5787652111 011000 000112346789999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCcEEEEeecCCc
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~ 179 (304)
|..++|.|-++++++-|.|..
T Consensus 168 vqgvawDpl~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRH 188 (434)
T ss_pred cceeecchhhhhhhhhccCcc
Confidence 999999999999999888884
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-18 Score=150.96 Aligned_cols=265 Identities=12% Similarity=0.135 Sum_probs=168.7
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEe-eCCCcEEEEeCC-Cce--eeeeecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSL-KCC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg-~~dg~v~iwd~~-~~~--~~~~~~~h~~~V~~l~~s 77 (304)
.+++|++||+.++..+...+.-........++++|++++|+++ ..++.|.+|+.. ++. ...... ..+....++|+
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~ 88 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTD 88 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEEC
Confidence 4788999999753222111111122347789999999987655 568999999986 332 222222 23346689999
Q ss_pred CCCCeEEEEeC-CCceEEEEeeeCCCe----eEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCccccce-
Q psy4754 78 PDGTAFSSGSW-DTTLRCRLFDLRADK----EVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVN- 150 (304)
Q Consensus 78 ~d~~~l~sgs~-D~~i~~~~wd~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~- 150 (304)
|++++|++++. ++. +.+|++.... .+..... ......+.++|+++++++++ .++.|.+||+.+...+.
T Consensus 89 ~~g~~l~v~~~~~~~--v~v~~~~~~g~~~~~~~~~~~---~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 89 HQGRFLFSASYNANC--VSVSPLDKDGIPVAPIQIIEG---LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred CCCCEEEEEEcCCCe--EEEEEECCCCCCCCceeeccC---CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 99999888775 555 4689886422 1111111 12345678999999886654 56999999987633221
Q ss_pred ------eccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecC--Cc--eEEEeecC--c--eeeeeeEEEEcCCCC
Q psy4754 151 ------HLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRA--DK--EVACYKKD--S--ILFGATSVDFSVSGR 215 (304)
Q Consensus 151 ------~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~--~~--~~~~~~~~--~--~~~~~~~~~~s~~g~ 215 (304)
... .......+.|+|++++++++.. ++++ .+|++.. ++ .+..+... . .......+.++|+|+
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v--~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSV--DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEE--EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 111 1234578999999999887766 6665 5788763 22 22222110 0 001123588999999
Q ss_pred EEEEEeC-CCcEEEEeCCCceeeEEeeccc---cceEEEEEccCCCEEEEeec-CCeeeeccccc
Q psy4754 216 LLFAGYN-DYTINVWDSLKCCRVNHLMGHE---NRVSCLQVSPDGTAFSSGSW-DTTLRDEESKN 275 (304)
Q Consensus 216 ~l~sg~~-d~~i~iwd~~~~~~~~~~~~h~---~~i~~l~~sp~g~~lasgs~-D~~i~~~~~~~ 275 (304)
+++++.. ++.|.+|++.+.....++.+|. .....++|+|||++|+++.. +++|.+|+.+.
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9888754 6889999875433222222221 24567999999999987765 89999997653
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=179.55 Aligned_cols=243 Identities=19% Similarity=0.223 Sum_probs=187.1
Q ss_pred eeEEEEcCCCC----EEEEeeCCCcEEEEeCCC---c---eeeeeecCCcCcEEEEEECCCC-CeEEEEeCCCceEEEEe
Q psy4754 29 ATSVDFSVSGR----LLFAGYNDYTINVWDSLK---C---CRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 29 i~~~~~~~~g~----~l~tg~~dg~v~iwd~~~---~---~~~~~~~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~w 97 (304)
.+.++|.+.|. +||.|..||.|-+||... + +.+.+...|.+.|..|.|++.+ ++|+||+.|+.| ++|
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI--~iW 144 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI--LIW 144 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE--EEe
Confidence 57899998765 489999999999999865 2 3456677899999999999965 599999999995 799
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCccc--ceeEEEEcCCCc-EEEE
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN--RVSCLQVSPDGT-AFSS 173 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~v~~sp~~~-~las 173 (304)
|+..-+..-.+.......-|.+++|+.. ...|++++.+|.+.|||++..+.+..+..|.. .+..++|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 9976433222211111223567888755 34578899999999999998887777766654 467899999874 4555
Q ss_pred eecC-CceEEEEeeecCCc-eEEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEE
Q psy4754 174 GSWD-TTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 250 (304)
Q Consensus 174 ~s~d-~~i~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l 250 (304)
++.| +.-.|.+||+|... .+..+..|. -++.++.|++.+ .+|++++.|+.|.+|+..+++.+.++..-..++..+
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~--~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv 302 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQ--RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV 302 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccc--cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee
Confidence 5544 43346799998754 344554443 467899999887 889999999999999999999999998888999999
Q ss_pred EEccCC-CEEEEeecCCeeeeccccc
Q psy4754 251 QVSPDG-TAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 251 ~~sp~g-~~lasgs~D~~i~~~~~~~ 275 (304)
.|.|.. ..++.+|-|+.|.++.+..
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeec
Confidence 999955 4888999999999886543
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=157.43 Aligned_cols=270 Identities=16% Similarity=0.123 Sum_probs=201.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~ 78 (304)
+.++++|||..+.+..+.+-.+...+++.++.|..... .+++.+.|..+++|.-... +....-+.-.+.-.|++...
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 56789999999987776666666677899999987654 3456677889999985322 22211111223445666666
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc-cc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-EN 157 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~ 157 (304)
...++++|+..+++ .+||++.....+.++.+. ..++++.+.....++|+++..|.|.+-.+.+...-.++... ..
T Consensus 90 ~S~y~~sgG~~~~V--kiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 90 QSLYEISGGQSGCV--KIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ 165 (673)
T ss_pred cceeeeccCcCcee--eehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC
Confidence 67899999999995 689999655555444443 35789999999999999999999999998887766665433 34
Q ss_pred ceeEEEEcCCCcE-EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCce
Q psy4754 158 RVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 158 ~v~~v~~sp~~~~-las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~~~ 235 (304)
.|.-+.|+|..++ +.+++.+|.| .+||+....+...+... +..++..++|+|..+ +|++.+.|..|.+||.....
T Consensus 166 svRll~ys~skr~lL~~asd~G~V--tlwDv~g~sp~~~~~~~-HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAV--TLWDVQGMSPIFHASEA-HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred eEEEeecccccceeeEeeccCCeE--EEEeccCCCcccchhhh-ccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 5668899998875 5588888886 59999887766554322 224667899999865 56778899999999988665
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 236 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 236 ~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
....+. ...|...|+|+++|.+|+.|+..+.|..||.+....+
T Consensus 243 s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 243 STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 555443 5668999999999999999999999999988654433
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=148.69 Aligned_cols=238 Identities=20% Similarity=0.232 Sum_probs=172.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
.++++-|-.++. |.+|...|.|++|++.+......++ .|...|+.+..-|+ ..|.+-+.|..+ .+|++....-+.
T Consensus 16 ~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L--~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 16 SVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL--ILWTIAYSAFIS 91 (323)
T ss_pred hheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE--EEEEccCcceEE
Confidence 388999987765 7799999999999999887777777 57788999998886 567777888875 678876421111
Q ss_pred E---------------------------Eeccc------------------------eeeceeeeEEc-CCCC--EEEEE
Q psy4754 107 C---------------------------YKKDS------------------------ILFGATSVDFS-VSGR--LLFAG 132 (304)
Q Consensus 107 ~---------------------------~~~~~------------------------~~~~~~~~~~s-~~~~--~l~sg 132 (304)
. +..+. .+..+.+..+. .++. ++++|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 0 00000 00001111111 1122 56778
Q ss_pred eCCCeEEEecCCccccce----------eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC--ce-EE-Eeec
Q psy4754 133 YNDYTINVWDSLKCCRVN----------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD--KE-VA-CYKK 198 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~~~----------~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~--~~-~~-~~~~ 198 (304)
.++|.+.+||+.++..+. ....|..+|.++.|.+....=++|+.+..+ ..|.+... .. +. ....
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl--~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL--VMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc--eeeeeccccCcccccceEEe
Confidence 889999999998764332 335799999999998866566677766664 35655432 21 11 1111
Q ss_pred CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 199 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 199 ~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.. .++..+..-||++.+|+++=|+.|+||.-.+..++..++-|.+.|.+++|+|+...+|++|+|.+|.+|.+
T Consensus 250 kn--pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KN--PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cC--CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 11 35678889999999999999999999999999999999999999999999999999999999999999975
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-17 Score=148.02 Aligned_cols=265 Identities=33% Similarity=0.485 Sum_probs=201.2
Q ss_pred CceeEEeeccccc-eEeeeeccccccceeEEEE-cCCCC-EEEEeeC-CCcEEEEeCCC-ceeeeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADK-EVACYKKDSILFGATSVDF-SVSGR-LLFAGYN-DYTINVWDSLK-CCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~-~~~~~~~~~~~~~i~~~~~-~~~g~-~l~tg~~-dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s 77 (304)
++.+.+|+...+. ....+..... ..+..+.+ .+++. +++..+. |+.+++|+... ......+..|...|..++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 164 (466)
T COG2319 86 DGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164 (466)
T ss_pred CCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC
Confidence 7789999999986 4444433221 24555665 78887 5555445 99999999987 77778889999999999999
Q ss_pred CCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccce-eccC
Q psy4754 78 PDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVN-HLMG 154 (304)
Q Consensus 78 ~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~-~~~~ 154 (304)
|+++.+++++. |+.+ ++|++.....+..+..+ ...+..++++|++. .+++++.|+.|++||......+. .+.+
T Consensus 165 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~ 240 (466)
T COG2319 165 PDGKLLASGSSLDGTI--KLWDLRTGKPLSTLAGH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240 (466)
T ss_pred CCCCEEEecCCCCCce--EEEEcCCCceEEeeccC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence 99998888875 8885 78999876666555542 23567889999988 55555899999999887666666 5788
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
|...+ ...|+|++..+++++.|+.+ ++|+.+.... ......+ ...+.++.|+|++..+++++.|+.+.+|+..+
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 241 HSDSV-VSSFSPDGSLLASGSSDGTI--RLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred CCcce-eEeECCCCCEEEEecCCCcE--EEeeecCCCcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 88775 44899999888899999996 6899987664 3333222 24567889999999988898888899999887
Q ss_pred ceeeEEee--ccccceEEEEEccCCCEEEEe-ecCCeeeeccccccc
Q psy4754 234 CCRVNHLM--GHENRVSCLQVSPDGTAFSSG-SWDTTLRDEESKNRY 277 (304)
Q Consensus 234 ~~~~~~~~--~h~~~i~~l~~sp~g~~lasg-s~D~~i~~~~~~~~~ 277 (304)
........ .|...+..+.|.+++..++.+ ..|+.+++|+.....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77666665 788889999994343555555 788999999775554
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=144.88 Aligned_cols=237 Identities=21% Similarity=0.278 Sum_probs=172.9
Q ss_pred eeEEEEc-------CCCCEEEEeeCCCcEEEEeCCCceeeeeecC--CcCcE---EEEEECCCCCeEEEEeCCCceEEEE
Q psy4754 29 ATSVDFS-------VSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRV---SCLQVSPDGTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 29 i~~~~~~-------~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~--h~~~V---~~l~~s~d~~~l~sgs~D~~i~~~~ 96 (304)
|....|- |+..++|+.+.|.-|++||..+|+....+++ |.+.+ .+|+|+|||++|+.|- .++ +++
T Consensus 107 vydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krc--irv 183 (406)
T KOG2919|consen 107 VYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRC--IRV 183 (406)
T ss_pred EEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cce--EEE
Confidence 5555554 5677999999999999999999976655543 55544 4899999999999874 445 478
Q ss_pred eee-CCCeeEeEE---ec--cceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc
Q psy4754 97 FDL-RADKEVACY---KK--DSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 169 (304)
Q Consensus 97 wd~-~~~~~~~~~---~~--~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 169 (304)
+|+ +.++.-..+ .+ ....--+.+++|+|... .++.|+....+-+|.-..+.++..+.+|.+.|+.+.|.++|+
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence 998 333222111 11 11111245788998655 788899988888888777888888899999999999999999
Q ss_pred EEEEeecCCceEEEEeeecCCce-EEEeecCce-eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceeeEEeeccccc
Q psy4754 170 AFSSGSWDTTLRCRLFDLRADKE-VACYKKDSI-LFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENR 246 (304)
Q Consensus 170 ~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~-~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~ 246 (304)
.|.+|+.-.. +|..||+|..+. +..+..+.. ...-.-....|++++|++|+.||.|++||+.+ +..+..+..|...
T Consensus 264 ~lfsGaRk~d-kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 264 KLFSGARKDD-KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred eecccccCCC-eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 9999986322 256899997653 222211111 11123455679999999999999999999987 6667777789999
Q ss_pred eEEEEEccCCCEEEEeecCCeee
Q psy4754 247 VSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 247 i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
++.++++|-=.++|++|-.+..+
T Consensus 343 vNgvslnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQRIFK 365 (406)
T ss_pred ccceecCcccceeeeccCceeec
Confidence 99999999988899887544433
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-17 Score=147.34 Aligned_cols=244 Identities=36% Similarity=0.493 Sum_probs=189.5
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-eeeeecCCcC-cEEEEEE-CCCCC-eEEEEeC-CCceEEEEeee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHEN-RVSCLQV-SPDGT-AFSSGSW-DTTLRCRLFDL 99 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-~~~~~~~h~~-~V~~l~~-s~d~~-~l~sgs~-D~~i~~~~wd~ 99 (304)
+...+.++.|.+.+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++. .++..+. |+. +.+||+
T Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~ 141 (466)
T COG2319 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT--VKLWDL 141 (466)
T ss_pred ccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc--EEEEEe
Confidence 34448999999999999999999999999998876 6666666443 7777777 88887 5555444 777 478999
Q ss_pred CC-CeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeec
Q psy4754 100 RA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSW 176 (304)
Q Consensus 100 ~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~ 176 (304)
.. ......+..+.. .+..+.|+|++..+++++. ++.+++|+..+...+..+.+|...|.+++|+|++. .+++++.
T Consensus 142 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 142 STPGKLIRTLEGHSE--SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred cCCCeEEEEEecCcc--cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 86 455554444332 3457999999998888885 99999999988777777888999999999999998 5666688
Q ss_pred CCceEEEEeeecCCceEE-EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee-eEEeeccccceEEEEEcc
Q psy4754 177 DTTLRCRLFDLRADKEVA-CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~i~~l~~sp 254 (304)
|+.+ .+||........ .+..+... . ...|+|++.++++++.|+.+++|+...... +..+.+|...|.++.|+|
T Consensus 220 d~~i--~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 220 DGTI--RLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred CCcE--EEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 9987 488887665555 34433321 1 127999999999999999999999876554 444568899999999999
Q ss_pred CCCEEEEeecCCeeeeccccccc
Q psy4754 255 DGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
++..+++++.|+.+++|+.....
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCc
Confidence 99999999999889999665443
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=152.77 Aligned_cols=259 Identities=20% Similarity=0.233 Sum_probs=190.5
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCC--EEEEeeCCCcEEEEeCCCc----------------------
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR--LLFAGYNDYTINVWDSLKC---------------------- 58 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~l~tg~~dg~v~iwd~~~~---------------------- 58 (304)
|++||||.+.|+.|+..++... .|.|++|+|.+. +||.+ ....+.|-+..=|
T Consensus 421 DGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~ 496 (733)
T KOG0650|consen 421 DGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPD 496 (733)
T ss_pred CCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCc
Confidence 7899999999999998877553 489999999765 44444 3333555553110
Q ss_pred --------------e-eeeeecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEE
Q psy4754 59 --------------C-RVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDF 122 (304)
Q Consensus 59 --------------~-~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (304)
+ -+.....|...|..+.|+.+|.||++...|+ .-.+.+.++.......-+++.. ..+..+.|
T Consensus 497 ~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~F 574 (733)
T KOG0650|consen 497 AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKF 574 (733)
T ss_pred ccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEe
Confidence 0 0122335788999999999999999876543 3334566665443333332222 13568899
Q ss_pred cCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC-ceEEEeecCce
Q psy4754 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSI 201 (304)
Q Consensus 123 s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~ 201 (304)
+|...+|+.++ ...|++||+.+...+..+......|..++++|.|..++.++.|+.+ .-+|+.-. ++...+..+.
T Consensus 575 HPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~--~WfDldlsskPyk~lr~H~- 650 (733)
T KOG0650|consen 575 HPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM--CWFDLDLSSKPYKTLRLHE- 650 (733)
T ss_pred cCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee--EEEEcccCcchhHHhhhhh-
Confidence 99998888776 5789999998877777776677789999999999999999999986 24576543 2333333332
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEe------CC---CceeeEEeeccccc----eEEEEEccCCCEEEEeecCCee
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWD------SL---KCCRVNHLMGHENR----VSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd------~~---~~~~~~~~~~h~~~----i~~l~~sp~g~~lasgs~D~~i 268 (304)
..+.+++|++.-.++++|+.|+++.||- +. --.+++.+.+|... |....|+|....|.|++.|++|
T Consensus 651 -~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 651 -KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred -hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 3468999999999999999999999983 21 13467888999876 9999999999999999999999
Q ss_pred eecc
Q psy4754 269 RDEE 272 (304)
Q Consensus 269 ~~~~ 272 (304)
|+|.
T Consensus 730 rlfT 733 (733)
T KOG0650|consen 730 RLFT 733 (733)
T ss_pred EeeC
Confidence 9984
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-19 Score=148.68 Aligned_cols=229 Identities=21% Similarity=0.272 Sum_probs=168.5
Q ss_pred CCEEEEeeCCCcEEEEeCCC---------------------ceeeeeecCCcCcEEEEEECCC-CCeEEEEeCCCceEEE
Q psy4754 38 GRLLFAGYNDYTINVWDSLK---------------------CCRVNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCR 95 (304)
Q Consensus 38 g~~l~tg~~dg~v~iwd~~~---------------------~~~~~~~~~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~ 95 (304)
|+++|.|..|..|.|||+.= +..-..-.+|.+.|..|+|+.. .+.|+|||.|.+| .
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV--~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV--K 269 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE--E
Confidence 57999999999999999621 1111112369999999999875 4589999999996 6
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEE
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSS 173 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las 173 (304)
+||+.++++...+..+.. .+.++.|+|. ...+++|+.|++|.+.|.+..........-.+.|..++|.|... .|.+
T Consensus 270 lWD~~~g~p~~s~~~~~k--~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGK--KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEcCCCCcceehhhcCC--ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 999999998887765433 4678999875 56789999999999999885322222233456799999998664 5667
Q ss_pred eecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCcee--eEEeeccccceEE
Q psy4754 174 GSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCR--VNHLMGHENRVSC 249 (304)
Q Consensus 174 ~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~~~~--~~~~~~h~~~i~~ 249 (304)
+..||++ +-+|+|.. +++...+.|. .++.++++++.-+ ++++++.|+.+++|++..... +..-.--.++..|
T Consensus 348 ~tddG~v--~~~D~R~~~~~vwt~~AHd--~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 348 STDDGTV--YYFDIRNPGKPVWTLKAHD--DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred ecCCceE--EeeecCCCCCceeEEEecc--CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 7788985 68999987 5666666665 3678898887754 677799999999998653222 2211112345778
Q ss_pred EEEccCC-CEEEEeecCCeeeecccc
Q psy4754 250 LQVSPDG-TAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 250 l~~sp~g-~~lasgs~D~~i~~~~~~ 274 (304)
.++.|+- -.||.|+..+.+|+|+..
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecc
Confidence 8888864 567888888899999863
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=142.05 Aligned_cols=239 Identities=24% Similarity=0.349 Sum_probs=174.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCC-----c--ee-----eeeec-CCcCcEEEEEEC-------CCCCeEEEEeC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLK-----C--CR-----VNHLM-GHENRVSCLQVS-------PDGTAFSSGSW 88 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-----~--~~-----~~~~~-~h~~~V~~l~~s-------~d~~~l~sgs~ 88 (304)
...+.|+|||..|++-+.|..+++|++.. . .. ...++ .-..-|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 46799999999999999999999999742 1 00 01111 122456677776 56778899999
Q ss_pred CCceEEEEeeeCCCeeEeEEec---cceeeceeeeEEcCCCCEEEEEeCCCeEEEecC-Ccccc--cee-----ccCccc
Q psy4754 89 DTTLRCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYNDYTINVWDS-LKCCR--VNH-----LMGHEN 157 (304)
Q Consensus 89 D~~i~~~~wd~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~-~~~~~--~~~-----~~~h~~ 157 (304)
|.-| .+||..+++....++. .....+..++.|+|||.+|++|. ...|+++|+ +.+.. +.. ..+..+
T Consensus 132 ~~PI--h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPI--HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCce--eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9886 6899988876555432 22234567999999999999775 679999998 33321 211 234467
Q ss_pred ceeEEEEcCC-CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-c
Q psy4754 158 RVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLK-C 234 (304)
Q Consensus 158 ~v~~v~~sp~-~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~~-~ 234 (304)
-+.+++|+|- .+.+|.++.-+++- +|.-...+++..+..+. .+|+.+.|.++|+.|++|.. |-.|..||++. .
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~g--iy~~~~~~pl~llggh~--gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVG--IYNDDGRRPLQLLGGHG--GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred eeeeeeccCCCCcceeeecccceee--eEecCCCCceeeecccC--CCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 7899999995 45899999888865 45444455665554443 57899999999999999875 45799999864 3
Q ss_pred eeeEEeecccc----ceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 235 CRVNHLMGHEN----RVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 235 ~~~~~~~~h~~----~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.++-.+.+|.+ +|. ..+.|+|+.||+|+.|+.|++||++.
T Consensus 285 ~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred chhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCC
Confidence 45556666654 444 56789999999999999999999866
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=148.12 Aligned_cols=262 Identities=17% Similarity=0.201 Sum_probs=185.2
Q ss_pred ceeEEeeccccce----EeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeee--eecCCcCcEEEEEE
Q psy4754 4 NHCRLFDLRADKE----VACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVN--HLMGHENRVSCLQV 76 (304)
Q Consensus 4 ~~v~~wd~~~~~~----~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~~ 76 (304)
+.|-+||+.+.++ +..+ .-+...|+++.|+|.. ..+++.|.||+|++=|.+++..-. .+..-..++..+.|
T Consensus 210 G~VG~Wn~~~~~~d~d~v~~f--~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~ 287 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKDKDGVYLF--TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDF 287 (498)
T ss_pred CcEEEEecCCCCCccCceEEe--ccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccc
Confidence 5699999964322 2222 2333449999999965 578899999999999998764332 23234567788999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCee-EeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccc----cce
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCC----RVN 150 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~----~~~ 150 (304)
+.+...++.+..=|. ..+||.+.... ...+..+.. .|++++++|... ++++++.|++++|||++.-. ++.
T Consensus 288 ~~e~~~vl~~~~~G~--f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l 363 (498)
T KOG4328|consen 288 SAESRSVLFGDNVGN--FNVIDLRTDGSEYENLRLHKK--KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL 363 (498)
T ss_pred cCCCccEEEeecccc--eEEEEeecCCccchhhhhhhc--ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcce
Confidence 887766666654444 46899987554 333333332 578999998755 57889999999999987532 234
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeec----CCceEEEeecCcee---eeeeEEEEcCCCCEEEEEeCC
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR----ADKEVACYKKDSIL---FGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~----~~~~~~~~~~~~~~---~~~~~~~~s~~g~~l~sg~~d 223 (304)
....|...|.+..|||.+-.++|.+.|..| ++||.. .......+.+.... ......+|.|+..++++|-.-
T Consensus 364 st~~HrrsV~sAyFSPs~gtl~TT~~D~~I--Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~ 441 (498)
T KOG4328|consen 364 STLPHRRSVNSAYFSPSGGTLLTTCQDNEI--RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP 441 (498)
T ss_pred ecccccceeeeeEEcCCCCceEeeccCCce--EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC
Confidence 456899999999999998889999999995 789973 33333333222110 112356799999999999988
Q ss_pred CcEEEEeCCCceeeEEeecccc-ceEEE-EEccCCCEEEEe-ecCCeeeeccc
Q psy4754 224 YTINVWDSLKCCRVNHLMGHEN-RVSCL-QVSPDGTAFSSG-SWDTTLRDEES 273 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~h~~-~i~~l-~~sp~g~~lasg-s~D~~i~~~~~ 273 (304)
..|-|+|...++.+.++.+... .|.++ .|+|-+..+++| +.-+.|.+|..
T Consensus 442 r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 442 RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 8999999988887887766554 55554 899988755555 45677777754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=154.62 Aligned_cols=235 Identities=17% Similarity=0.103 Sum_probs=161.7
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---CcEEEEeCCCcee--eeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCR--VNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s 77 (304)
+.+|.+||........ + ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++. +..+.+| ...++|+
T Consensus 183 ~~~i~i~d~dg~~~~~-l--t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQFI-V--NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCceE-e--ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC
Confidence 4689999987765322 1 2223348899999999988877654 4799999987753 4334444 3468999
Q ss_pred CCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCccccceeccCc
Q psy4754 78 PDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 78 ~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h 155 (304)
|||+.|+.++ .|+...+++||+..+.... +..+. .......|+||++.++..+ .++...+|++...........+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~--~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~ 333 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTSGA--GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG 333 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeEe-eccCC--CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC
Confidence 9999887764 6888777778876654332 22221 1245788999999877655 5788888875432211122233
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC--CC
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LK 233 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~--~~ 233 (304)
.. ....|+|||+.++..+.++. ..||+.+++........ ...++.|+|+|++|+.++.++.+.+|++ .+
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~i---~~~Dl~~g~~~~lt~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDNV---VKQDLTSGSTEVLSSTF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCCE---EEEECCCCCeEEecCCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 33 35689999999988877653 46898877643222211 1245779999999999999998888875 35
Q ss_pred ceeeEEeeccccceEEEEEccC
Q psy4754 234 CCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
+..+..+.+|.+.+...+|+|-
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEccCCCCCCCCcccCCC
Confidence 6677888889988999999984
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=149.44 Aligned_cols=196 Identities=23% Similarity=0.257 Sum_probs=151.7
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK 109 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~ 109 (304)
.+++|+++|..+++|+.||++|+|+....+.+..+..|...|.+|.|+|||+.|++-+.| . +++|+..++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~--~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S--ARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-c--eEEEEeccCchhhhcC
Confidence 579999999999999999999999977777777778899999999999999999999999 3 5899999886665544
Q ss_pred ccceeeceeeeEEcCCC-----CEEEEEeCCCeEEEecCCcccc-----ceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 110 KDSILFGATSVDFSVSG-----RLLFAGYNDYTINVWDSLKCCR-----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 110 ~~~~~~~~~~~~~s~~~-----~~l~sg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+....+....+.|+.++ ..++....-+.|+.||+..... ..+...-...|++++.+++|+++|.|+.|+.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 32223345678888877 3334445567888877543221 2222223357999999999999999999999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
| -+++..+.+.++..+.. +..-|+.+.|+|+.+++++-+.|..+.+..+
T Consensus 305 V--ai~~~~~lq~~~~vk~a-H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 305 V--AIYDAKSLQRLQYVKEA-HLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred E--EEEEeceeeeeEeehhh-heeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 6 58998887776554432 3347899999999999999888888887754
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-18 Score=133.47 Aligned_cols=238 Identities=16% Similarity=0.103 Sum_probs=174.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCC---------c-eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLK---------C-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~---------~-~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd 98 (304)
|.+-+++|.+++|++|..+|+|.+.+++. + .++-.+++|+++|..++|. ..+|++|+ ||.++-|.|+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 66678999999999999999999999743 2 2344568999999999998 45788877 5888877887
Q ss_pred eCCC----eeEeEEe----c-cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc
Q psy4754 99 LRAD----KEVACYK----K-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 169 (304)
Q Consensus 99 ~~~~----~~~~~~~----~-~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 169 (304)
-..+ +++...+ . ......++++-..|..+-++.++.|+.++-||+++++...++.||+++|.++.-....-
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 4322 1111111 1 01112356777777777777777899999999999998899999999999999855445
Q ss_pred EEEEeecCCceEEEEeeecCCceEEEeecCcee------eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc
Q psy4754 170 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243 (304)
Q Consensus 170 ~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 243 (304)
.+.+|+.|+++ |+||.++.+.+..+...... .+-+..+..-+...|++|+ ...+.+|.++..++...+. -
T Consensus 170 qilsG~EDGtv--RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp-i 245 (325)
T KOG0649|consen 170 QILSGAEDGTV--RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-I 245 (325)
T ss_pred ceeecCCCccE--EEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe-c
Confidence 68999999995 79999999887766433221 1122345556778888875 4689999998776666554 3
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.+++..+.|-. ..+++++..+.+.-|.+..
T Consensus 246 pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 246 PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 46778888854 4677777777888777643
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=152.61 Aligned_cols=237 Identities=16% Similarity=0.144 Sum_probs=175.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe-EEEEeCCCceEEEEeeeCCCee--
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADKE-- 104 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~-l~sgs~D~~i~~~~wd~~~~~~-- 104 (304)
.|.++...|.|.+|++|+.||+||||.+.+|.+++++. ..+.|.|++|+|.+.. ++..+.+..+ .+-+-.-+..
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~--~ivnp~~G~~~e 478 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV--LIVNPIFGDRLE 478 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCce--EEeCccccchhh
Confidence 38999999999999999999999999999999998865 4568999999998763 3333334332 2222211100
Q ss_pred --------------------EeEEecc---c----------eeeceeeeEEcCCCCEEEEEeC---CCeEEEecCCcccc
Q psy4754 105 --------------------VACYKKD---S----------ILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCR 148 (304)
Q Consensus 105 --------------------~~~~~~~---~----------~~~~~~~~~~s~~~~~l~sg~~---dg~i~iwd~~~~~~ 148 (304)
+..+... . +.-.+..+.|+..|.||++... ...|.|.++.+...
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 0011100 0 0012567899999999999754 46788888877665
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEE
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 228 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~i 228 (304)
..-|..-.+.|.++.|+|...+|..+++.. +++||+.....+..+.... .-+.+++.+|.|..|+.|+.|+.+-.
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq~~---vRiYdL~kqelvKkL~tg~--kwiS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQRS---VRIYDLSKQELVKKLLTGS--KWISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEeccc---eEEEehhHHHHHHHHhcCC--eeeeeeeecCCCCeEEEecCCCeeEE
Confidence 555656667899999999988887776544 4799987755444333322 24678999999999999999999998
Q ss_pred EeCCCc-eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 229 WDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 229 wd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
||+.-. ++.++++-|...+.+|+|++-=..|++||.|+++.++.
T Consensus 634 fDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 634 FDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 998643 45667888999999999999999999999999998763
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=148.22 Aligned_cols=183 Identities=20% Similarity=0.316 Sum_probs=135.7
Q ss_pred CceeEEeecccc--------------ceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCce---eeeee
Q psy4754 3 KNHCRLFDLRAD--------------KEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCC---RVNHL 64 (304)
Q Consensus 3 ~~~v~~wd~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~---~~~~~ 64 (304)
.++|+|||+..- +..+.+....+...=++++|||-. ..|+||.--+.|++|.+.++. -.+.+
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf 253 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF 253 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc
Confidence 467999988652 111222222222224789999943 247799888999999998763 12456
Q ss_pred cCCcCcEEEEEECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 65 MGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 65 ~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
.+|...|..|+|||.. ..|+|||.|++| ++||++.+....++....+...++-+.|+....+||+|+.||+++|||+
T Consensus 254 ~gH~~SVEDLqWSptE~~vfaScS~DgsI--rIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 254 TGHTKSVEDLQWSPTEDGVFASCSCDGSI--RIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred cccccchhhhccCCccCceEEeeecCceE--EEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 7899999999999964 589999999996 7899998743333221112224677889888889999999999999998
Q ss_pred Cc---cccceeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecC
Q psy4754 144 LK---CCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRA 189 (304)
Q Consensus 144 ~~---~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~ 189 (304)
++ ++++.++.-|+.+|++|.|+|.. ..|++++.|..+ .+||+.-
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi--tiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI--TIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE--EEEEeec
Confidence 75 45678899999999999999965 467788888886 5899854
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=160.02 Aligned_cols=267 Identities=18% Similarity=0.235 Sum_probs=184.8
Q ss_pred CceeEEeeccccceEeeeeccccccc-eeEEEEcC--CCCEEEEeeCCCcEEEEeCC-----Cceeeee---ecC----C
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFG-ATSVDFSV--SGRLLFAGYNDYTINVWDSL-----KCCRVNH---LMG----H 67 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~-i~~~~~~~--~g~~l~tg~~dg~v~iwd~~-----~~~~~~~---~~~----h 67 (304)
..+|++||.+.++.+..|........ |+.+.+-. |..++++|+.||.||||+-- +.+.+.. +.+ -
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 46799999999998777666543333 99999865 45689999999999999942 1222211 111 1
Q ss_pred cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEc-CCCCEEEEEeCCCeEEEecCCcc
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~ 146 (304)
.+.-.-++|.....+|+++|.-+. |++||...+....-+..... -.++++.-+ ..|+.+++|..||.|++||.+..
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~--IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRS--IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeE--EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccC
Confidence 122234578776666666554333 68999987776654433221 123333222 33789999999999999997653
Q ss_pred ---ccceeccCcccc--eeEEEEcCCCc-EEEEeecCCceEEEEeeecCCce--EEEeecCcee-eeeeEEEEcCCCCEE
Q psy4754 147 ---CRVNHLMGHENR--VSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKE--VACYKKDSIL-FGATSVDFSVSGRLL 217 (304)
Q Consensus 147 ---~~~~~~~~h~~~--v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~~~-~~~~~~~~s~~g~~l 217 (304)
..+.....|++. |..+.+.++|- .+++|+.||.| .+||+|.... ......+... ...+++..++....+
T Consensus 1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I--~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI--QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred CccccceeecccCCcccceeEEeecCCCcceeeeccCCeE--EEEecccCcccccceeeeccccCccceeeeeccCCCee
Confidence 345667788888 99999988775 49999999996 6899987421 1111111100 126889999999999
Q ss_pred EEEeCCCcEEEEeCCCceeeEEeec-------cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 218 FAGYNDYTINVWDSLKCCRVNHLMG-------HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 218 ~sg~~d~~i~iwd~~~~~~~~~~~~-------h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
|+|+. +.|+||++. |+.+..++. ..+.+.|++|+|.--++|.|+.|.+|-++...++
T Consensus 1320 AsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99998 899999964 333443332 2357899999999999999999999999966554
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=149.77 Aligned_cols=239 Identities=21% Similarity=0.249 Sum_probs=168.3
Q ss_pred EEEEcCC---CCEEEEeeCCCcEEEEeCCCcee------eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC
Q psy4754 31 SVDFSVS---GRLLFAGYNDYTINVWDSLKCCR------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 101 (304)
Q Consensus 31 ~~~~~~~---g~~l~tg~~dg~v~iwd~~~~~~------~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~ 101 (304)
++.|++. ..+||.+..||.|.++|...... ++...+|.+.|..++|.|....|++++.|.++ +.||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~--r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI--RPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee--eeeeecc
Confidence 4667642 35899999999999999864322 34456899999999999955689999999996 7899998
Q ss_pred CeeEeE--EeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccc--c-----c--------------------ee
Q psy4754 102 DKEVAC--YKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCC--R-----V--------------------NH 151 (304)
Q Consensus 102 ~~~~~~--~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~--~-----~--------------------~~ 151 (304)
.+.... +.. +...+.+++|.+.+. .|++|+.||.|.|||++... . . ..
T Consensus 132 s~l~G~~~~~G--H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 132 SRLVGGRLNLG--HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ceeecceeecc--cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 776654 222 233567888888655 67889999999999976322 0 0 01
Q ss_pred ccCcccceeE---EEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEe--------ecC-ceeeeeeEEEEcCCCCEEE
Q psy4754 152 LMGHENRVSC---LQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACY--------KKD-SILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 152 ~~~h~~~v~~---v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~--------~~~-~~~~~~~~~~~s~~g~~l~ 218 (304)
-..|...|.+ +.+..|+.+||++|. |+.| ++||++..+..... ..+ ....++.++.....|.+|+
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~i--KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTI--KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcce--EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 1123334444 555668889999988 8886 68999876432211 111 1123567788888899999
Q ss_pred EEeCCCcEEEEeCCCc--eeeEEeecccc---ceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 219 AGYNDYTINVWDSLKC--CRVNHLMGHEN---RVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 219 sg~~d~~i~iwd~~~~--~~~~~~~~h~~---~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+.+.|+.|++|++..- .++..+.+|.. .|. -..+||+.++++|+.|....+|.....
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCc
Confidence 9888999999997642 23444444432 222 247899999999999999999976553
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=133.42 Aligned_cols=224 Identities=16% Similarity=0.278 Sum_probs=154.0
Q ss_pred CCceeEEeeccccceEeeeec--cccccceeEEEEcCC--CCEEEEeeCCCcEEEEeCCCc---------eeeeeecCCc
Q psy4754 2 GKNHCRLFDLRADKEVACYKK--DSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKC---------CRVNHLMGHE 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~--~~~~~~i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~~---------~~~~~~~~h~ 68 (304)
.|++|+|||...+...-.... ..+..+|-.+.|.+. |+.+|+++.|+++.||.-..- ....++..-.
T Consensus 33 sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr 112 (361)
T KOG2445|consen 33 SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR 112 (361)
T ss_pred CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC
Confidence 488999999765533211111 233445888999754 899999999999999996211 1234455667
Q ss_pred CcEEEEEECCC--CCeEEEEeCCCceEEEEeeeCCCeeEeEE------e-----ccceeeceeeeEEcCC---CCEEEEE
Q psy4754 69 NRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKEVACY------K-----KDSILFGATSVDFSVS---GRLLFAG 132 (304)
Q Consensus 69 ~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~~~------~-----~~~~~~~~~~~~~s~~---~~~l~sg 132 (304)
..|+.++|.|. |-.|++++.||++ |+++....-.+..+ + .........++.|++. ..+++.|
T Consensus 113 ssV~DV~FaP~hlGLklA~~~aDG~l--RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 113 SSVTDVKFAPKHLGLKLAAASADGIL--RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred cceeEEEecchhcceEEEEeccCcEE--EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence 89999999995 5589999999996 67776543222221 1 0011122456777753 4567777
Q ss_pred eCC-----CeEEEecCC----ccccceeccCcccceeEEEEcCC----CcEEEEeecCCceEEEEeeecCCc--------
Q psy4754 133 YND-----YTINVWDSL----KCCRVNHLMGHENRVSCLQVSPD----GTAFSSGSWDTTLRCRLFDLRADK-------- 191 (304)
Q Consensus 133 ~~d-----g~i~iwd~~----~~~~~~~~~~h~~~v~~v~~sp~----~~~las~s~d~~i~i~~~d~~~~~-------- 191 (304)
+.+ +.+.||.-. +...+.++.+|+++|..++|.|+ -..+|+++.|| | ++|.++...
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v--~I~~v~~~~s~i~~ee~ 267 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V--RIFKVKVARSAIEEEEV 267 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E--EEEEEeeccchhhhhcc
Confidence 655 488888633 34456788899999999999995 34699999999 4 678776311
Q ss_pred ---------eEEEe-ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 192 ---------EVACY-KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 192 ---------~~~~~-~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.+... ...++...|..+.|+-.|..|++.+.||.|++|.
T Consensus 268 ~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 268 LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 11111 1233345789999999999999999999999996
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=136.72 Aligned_cols=195 Identities=19% Similarity=0.257 Sum_probs=148.4
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
-.|+.|++-|.+|+.|..||.+ .+||+.+-..-+.+..+ ..++++++||++|+.|++++.|..|.+||+..+.++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~v--vI~D~~T~~iar~lsaH--~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRV--VIYDFDTFRIARMLSAH--VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcE--EEEEccccchhhhhhcc--ccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 6789999999999999999996 68999877655555554 3468999999999999999999999999999988776
Q ss_pred eccCcccceeEEEEcCCCc--EEEEeecCCceEEEEeeecCCceEEEeecC---ceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 151 HLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~--~las~s~d~~i~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
.+ ....+|+...|+|-.. .+|+--.... .+.++...+. ..+... +.........|.+.|+++.+|...|.
T Consensus 102 ri-rf~spv~~~q~hp~k~n~~va~~~~~sp---~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 102 RI-RFDSPVWGAQWHPRKRNKCVATIMEESP---VVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred EE-EccCccceeeeccccCCeEEEEEecCCc---EEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 54 3557899999999543 3333333332 2344433221 111111 11111223358899999999999999
Q ss_pred EEEEeCCCceeeEEeeccc-cceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 226 INVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 226 i~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+.++|..+.+++..++--. ..|..+.|+-.|+.|+.-+.|+.||.++..
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999999988888776555 789999999999999999999999988764
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=139.82 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=155.3
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC--CCCeEEEEeCCCceEEEEeeeCCCeeEeEEecccee-e
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-F 115 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~-~ 115 (304)
..+|++-+.|+|++||..+++.+..+++|.+.+..+.|.. ....++||+.||+| ++||++...+...+...... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~V--r~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTV--RLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeE--EEEEeecchhhhheeccCCCCC
Confidence 4688999999999999999999999999999888888877 35689999999996 78999876655444322111 1
Q ss_pred ceeeeEEcCCCCEEEEEe----CCCeEEEecCCcccc-ceec-cCcccceeEEEEcCC-CcEEEEeecCCceEEEEeeec
Q psy4754 116 GATSVDFSVSGRLLFAGY----NDYTINVWDSLKCCR-VNHL-MGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~~-~~~~-~~h~~~v~~v~~sp~-~~~las~s~d~~i~i~~~d~~ 188 (304)
+..+++....++.++.|. .+-.|.+||++..+. +..+ ..|.+.|++|.|+|. .+.++|||.||-+ .+||+.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv--nlfD~~ 196 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV--NLFDTK 196 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE--EeeecC
Confidence 234555555667777763 477899999998765 4443 579999999999995 4789999999986 689875
Q ss_pred CCce----EEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCC-------------------------------
Q psy4754 189 ADKE----VACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSL------------------------------- 232 (304)
Q Consensus 189 ~~~~----~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~------------------------------- 232 (304)
.... +.++... ..+..+.|..++ +.|.+-+..++..+|++.
T Consensus 197 ~d~EeDaL~~viN~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~ 273 (376)
T KOG1188|consen 197 KDNEEDALLHVINHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH 273 (376)
T ss_pred CCcchhhHHHhhccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence 4311 1111111 112233333332 122333333333333321
Q ss_pred ------------------------------CceeeEEeec-cccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 233 ------------------------------KCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 233 ------------------------------~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..+.+..+.| |.+-|.++.|...+..+.||++|+.+.+|..
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 1222333444 6677888888888899999999999999964
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=148.48 Aligned_cols=234 Identities=16% Similarity=0.224 Sum_probs=170.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
|.|..++|.|||..|+.+. +..+.+||+++|..++++++|++-|.|++|+.||+.++||+.|+.+ .+|.-.-+..+.
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~V--I~W~~klEG~Lk 89 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSV--IIWTSKLEGILK 89 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeE--EEecccccceee
Confidence 3588899999998776553 4479999999999999999999999999999999999999999995 589865444333
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
+.. ...+.++.|.|-...+++++-. ..-+|........ ......++.+.+|..||++++-|-.||+|.++ +
T Consensus 90 -YSH---~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtnDGqylalG~~nGTIsiR--N 160 (1081)
T KOG1538|consen 90 -YSH---NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTNDGQYLALGMFNGTISIR--N 160 (1081)
T ss_pred -ecc---CCeeeEeecCchHHHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeecCCCcEEEEeccCceEEee--c
Confidence 222 2357899999999999987532 3456764322111 11223568889999999999999999998654 4
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCC-----CEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEE
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSG-----RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g-----~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~las 261 (304)
-........-.......++.+++|+|.. ..++...=..++.++.+. |+.+..-..-.-...|+.+-|+|.++..
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE
Confidence 3332333333334444678999999873 456666556677777653 3444333333445689999999999999
Q ss_pred eecCCeeeeccc
Q psy4754 262 GSWDTTLRDEES 273 (304)
Q Consensus 262 gs~D~~i~~~~~ 273 (304)
|+.|+.+.++..
T Consensus 240 GGsdk~L~~fTR 251 (1081)
T KOG1538|consen 240 GGSDKQLSLFTR 251 (1081)
T ss_pred ccCCCceEEEee
Confidence 999999988863
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=162.95 Aligned_cols=227 Identities=17% Similarity=0.193 Sum_probs=172.2
Q ss_pred CCceeEEeeccc---cc-eEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEE
Q psy4754 2 GKNHCRLFDLRA---DK-EVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~---~~-~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l 74 (304)
-|++|-+||... +. +....+...|...|..++|++... +||+|++||.|.|||+++-+...+.. .-.+.|.+|
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 378899999987 32 222333345555599999999755 99999999999999998755443332 245789999
Q ss_pred EECCC-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCC---CeEEEecCCcc-cc
Q psy4754 75 QVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYND---YTINVWDSLKC-CR 148 (304)
Q Consensus 75 ~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~d---g~i~iwd~~~~-~~ 148 (304)
+|+.. ...|+|++.++.. .+||++..+++..+........+..+.|+|+.. .+++++.| -.|.+||++.. .+
T Consensus 168 sWNrkvqhILAS~s~sg~~--~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRA--VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCc--eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 99874 4578888888763 689999887776555444333467899999854 45555443 57899998753 46
Q ss_pred ceeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcE
Q psy4754 149 VNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTI 226 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i 226 (304)
++++.+|...|.+|.|++.+ .+++|++.|+.+ .+|+..+++.+..+.... .-+..+.|.|... .+++++-||+|
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i--i~wN~~tgEvl~~~p~~~--nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI--ICWNPNTGEVLGELPAQG--NWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCe--eEecCCCceEeeecCCCC--cceeeeeecCCCcchhhhheeccce
Confidence 77788999999999999966 789999999996 589999999888876643 3457788999987 77778999999
Q ss_pred EEEeCCCc
Q psy4754 227 NVWDSLKC 234 (304)
Q Consensus 227 ~iwd~~~~ 234 (304)
.||.+...
T Consensus 322 ~I~sl~~~ 329 (1049)
T KOG0307|consen 322 SIYSLQGT 329 (1049)
T ss_pred eeeeeecC
Confidence 99986543
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-16 Score=127.82 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=146.4
Q ss_pred CCEEEEeeCCC--cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc-cee
Q psy4754 38 GRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-SIL 114 (304)
Q Consensus 38 g~~l~tg~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~-~~~ 114 (304)
..++|..+.+. .+++.+..+...+-.+. ...+|.++.++. +.|+.+=.+. +.++|+++.+.++.+... ...
T Consensus 56 SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~---IyIydI~~MklLhTI~t~~~n~ 129 (391)
T KOG2110|consen 56 SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES---IYIYDIKDMKLLHTIETTPPNP 129 (391)
T ss_pred cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc---EEEEecccceeehhhhccCCCc
Confidence 45565554443 48888887765553322 356888999874 4555554443 478999999988877543 222
Q ss_pred eceeeeEEcCCCCEEEE-Ee-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce
Q psy4754 115 FGATSVDFSVSGRLLFA-GY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 115 ~~~~~~~~s~~~~~l~s-g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~ 192 (304)
.+...+.+++.+.+++- ++ ..|.|.+||..+-+.+..+..|.+++-+++|+|+|+.+||+|..|+| ||++.+.+++.
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV-IRVf~v~~G~k 208 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV-IRVFSVPEGQK 208 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE-EEEEEcCCccE
Confidence 33455555566668776 33 36999999999988888899999999999999999999999999999 79999999999
Q ss_pred EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 193 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
+..++.......+.+++|+|++++|++.++.++|+||.+.
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9999877767778999999999999999999999999754
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=144.38 Aligned_cols=275 Identities=17% Similarity=0.167 Sum_probs=175.1
Q ss_pred ceeEEeeccccceEeeeecc--ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC--ce--eeeeecCCcCcEEEEEEC
Q psy4754 4 NHCRLFDLRADKEVACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--CC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~s 77 (304)
+.+-+|+............. .|.+.+++.++||+++++|+|..||.|.+|.-.. .. ..+.+.=|.++|.+++|+
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence 45677888775432222222 2333379999999999999999999999999543 21 222344488999999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC---
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--- 154 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--- 154 (304)
++|.+|+|||+.+.+ -+|.+.++.+....+... .+..+.+|||+.+.+....|+.|.+..+.+.....++.+
T Consensus 261 ~~G~~LlSGG~E~VL--v~Wq~~T~~kqfLPRLgs---~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVL--VLWQLETGKKQFLPRLGS---PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred cCCceEeecccceEE--EEEeecCCCcccccccCC---eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 999999999999885 589998876433333322 357888999999999999999999987644332222221
Q ss_pred --------cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEee-----------------------------
Q psy4754 155 --------HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK----------------------------- 197 (304)
Q Consensus 155 --------h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~----------------------------- 197 (304)
..+=.+.+.++|--+.++-.+.-++++ +||+-+.+.+..+.
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ--~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQ--FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEE--EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 122234555666444455555555542 44443322211110
Q ss_pred ---------------------------------------cCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCC-----
Q psy4754 198 ---------------------------------------KDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSL----- 232 (304)
Q Consensus 198 ---------------------------------------~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~----- 232 (304)
.+... .+..+.++|... ..++++.||.++||-+.
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~-~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA-FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce-eEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 11110 112222334333 78899999999999651
Q ss_pred -----CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc-cchhheeecccc
Q psy4754 233 -----KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN-RYMQYLLRSRIT 287 (304)
Q Consensus 233 -----~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~-~~~~~~~~~~~~ 287 (304)
...+...-.-|..++.+++|+.||..| +.|.|.+|.+||+.+ .-+.+...++..
T Consensus 493 ~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~~~l~~~~~~~~~ 552 (792)
T KOG1963|consen 493 YKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTKNELLCTEGSRNW 552 (792)
T ss_pred CcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCChhhhhcccccccc
Confidence 122222222388999999999999666 556789999999988 444444444433
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-16 Score=134.54 Aligned_cols=226 Identities=15% Similarity=0.194 Sum_probs=146.8
Q ss_pred EEEeeCCCcEEEEeCCC-c--eeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeec
Q psy4754 41 LFAGYNDYTINVWDSLK-C--CRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFG 116 (304)
Q Consensus 41 l~tg~~dg~v~iwd~~~-~--~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~ 116 (304)
+++...|+.|.+|++.+ + +.++.+. +.+....++++|++++|+.++. ++. +..|++.....+...........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~--i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFR--VLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCc--EEEEEECCCCceEEeeeecCCCC
Confidence 45557899999999963 3 2445554 3455678899999998877655 555 46788863222211111111113
Q ss_pred eeeeEEcCCCCEEEEEeC-CCeEEEecCCccc----cceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCC
Q psy4754 117 ATSVDFSVSGRLLFAGYN-DYTINVWDSLKCC----RVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRAD 190 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~----~~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~ 190 (304)
...+.++|+++++++++. ++.|.+|++.+.. .+..+. +...+.+++++|+++++++++ .++.| ++||+.+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v--~v~d~~~~ 158 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRI--RLFTLSDD 158 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEE--EEEEECCC
Confidence 457899999999888764 8999999986422 122222 223467788999998876544 45664 78998763
Q ss_pred ceEE-------EeecCceeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC--c--eeeEEeecc------ccceEEEEE
Q psy4754 191 KEVA-------CYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLK--C--CRVNHLMGH------ENRVSCLQV 252 (304)
Q Consensus 191 ~~~~-------~~~~~~~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~~--~--~~~~~~~~h------~~~i~~l~~ 252 (304)
..+. ..... ..+..++|+|+|++++++.. +++|.+|++.. + +.+..+..+ ......+.|
T Consensus 159 g~l~~~~~~~~~~~~g---~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 159 GHLVAQEPAEVTTVEG---AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CcccccCCCceecCCC---CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 3221 11111 23467899999999988765 89999999863 2 223333222 123346899
Q ss_pred ccCCCEEEEee-cCCeeeeccccc
Q psy4754 253 SPDGTAFSSGS-WDTTLRDEESKN 275 (304)
Q Consensus 253 sp~g~~lasgs-~D~~i~~~~~~~ 275 (304)
+|+|++|.++. .+++|.+|+.+.
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeC
Confidence 99999888874 478999998754
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=137.87 Aligned_cols=222 Identities=20% Similarity=0.294 Sum_probs=164.6
Q ss_pred eecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCee-------EeEEeccceeeceeeeEEcCC-CCEEEEEe
Q psy4754 63 HLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKE-------VACYKKDSILFGATSVDFSVS-GRLLFAGY 133 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~ 133 (304)
.+.||.++|..++|.| +.+.++|||.|.++ .+|.+..... +..+..+.. .+..+.|+|. .+.|++++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v--~vW~IPe~~l~~~ltepvv~L~gH~r--rVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKV--MVWQIPENGLTRDLTEPVVELYGHQR--RVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceE--EEEECCCcccccCcccceEEEeecce--eEEEEeecccchhhHhhcc
Confidence 4568999999999999 55689999999985 6899865332 223333222 2456788886 44678899
Q ss_pred CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC
Q psy4754 134 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 213 (304)
Q Consensus 134 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~ 213 (304)
.|.+|.+||..+++.+.++. |.+-|.++.|+.||..+++.+.|+.| |+||.+.++.+..-..+.. .......|-.+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkv--Rv~dpr~~~~v~e~~~heG-~k~~Raifl~~ 227 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKV--RVIDPRRGTVVSEGVAHEG-AKPARAIFLAS 227 (472)
T ss_pred CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccccee--EEEcCCCCcEeeecccccC-CCcceeEEecc
Confidence 99999999999998887766 99999999999999999999999985 7999999988766533322 22356678899
Q ss_pred CCEEEEEe---CCCcEEEEeCCC---ceeeEEeeccccceEEEEEccCCCEEE-EeecCCeeeeccccc--cchhheeec
Q psy4754 214 GRLLFAGY---NDYTINVWDSLK---CCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRDEESKN--RYMQYLLRS 284 (304)
Q Consensus 214 g~~l~sg~---~d~~i~iwd~~~---~~~~~~~~~h~~~i~~l~~sp~g~~la-sgs~D~~i~~~~~~~--~~~~~~~~~ 284 (304)
|.++.+|- +++.+-+||... +..+.++...+ .|.-==|.||...+. +|--|+.||-++..+ +|.+|+..=
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence 99666664 467899998543 33344454433 444345778776554 566699999886644 779999988
Q ss_pred cccCCceeE
Q psy4754 285 RITKPTQGL 293 (304)
Q Consensus 285 ~~~~~~~~~ 293 (304)
+.++|-.||
T Consensus 307 ~S~epQRG~ 315 (472)
T KOG0303|consen 307 SSKEPQRGM 315 (472)
T ss_pred ccCCccccc
Confidence 887776665
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-17 Score=142.60 Aligned_cols=164 Identities=22% Similarity=0.275 Sum_probs=118.8
Q ss_pred eCCCeEEEecCCcccccee--cc--CcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCc-------eEEEeecCc
Q psy4754 133 YNDYTINVWDSLKCCRVNH--LM--GHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADK-------EVACYKKDS 200 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~~~~--~~--~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~-------~~~~~~~~~ 200 (304)
+..|.|-||+++...++.. +. -....|+.+.|.| |.+.+|.++.|+.| ++|.+..+. ....+..+.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i--~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQI--NLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceE--EEEEeccCCCCcccCCcceeeeccc
Confidence 4568888888776443321 11 1234688999998 66789999999986 578764321 111222221
Q ss_pred eeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc-cch
Q psy4754 201 ILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN-RYM 278 (304)
Q Consensus 201 ~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~-~~~ 278 (304)
-.++++.|+|= ...|++++.|.+|++||+.+...-..+.+|.+.|..++|||||+.+||...|++||+++.+. +..
T Consensus 678 --eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 678 --EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred --ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 24689999997 56888999999999999999988888999999999999999999999999999999998876 333
Q ss_pred hheeeccccCCceeEEEEEecCCc
Q psy4754 279 QYLLRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ 302 (304)
-|..++-. +..|.++.+.-+|+
T Consensus 756 v~Eg~gpv--gtRgARi~wacdgr 777 (1012)
T KOG1445|consen 756 VYEGKGPV--GTRGARILWACDGR 777 (1012)
T ss_pred cccCCCCc--cCcceeEEEEecCc
Confidence 34333322 23466666665554
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=127.59 Aligned_cols=243 Identities=22% Similarity=0.261 Sum_probs=173.5
Q ss_pred eeEEEEcCC-CCEEEEeeCC-------CcEEEEeCCCc---------eeeeeec-CCcCcEEEEEECCCCCeEEEEeCCC
Q psy4754 29 ATSVDFSVS-GRLLFAGYND-------YTINVWDSLKC---------CRVNHLM-GHENRVSCLQVSPDGTAFSSGSWDT 90 (304)
Q Consensus 29 i~~~~~~~~-g~~l~tg~~d-------g~v~iwd~~~~---------~~~~~~~-~h~~~V~~l~~s~d~~~l~sgs~D~ 90 (304)
|..++-+|- ..+|+|+..+ -.+.||.+.+. +++..+. .+-+.|.|+.|.|++..|++-. |.
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn 144 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DN 144 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC
Confidence 778888884 4577777553 34779997542 2233332 3456899999999999988765 65
Q ss_pred ceEEEEeeeCCCeeE-eEEec-c--ceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceec-cCcccceeEEE
Q psy4754 91 TLRCRLFDLRADKEV-ACYKK-D--SILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQ 163 (304)
Q Consensus 91 ~i~~~~wd~~~~~~~-~~~~~-~--~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~ 163 (304)
.| .+|++.....+ ..... . ......++-+|+| +++.+++ ..|+++..||+++..+...+ ..|...|..+.
T Consensus 145 ~i--~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD 221 (370)
T KOG1007|consen 145 NI--VLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD 221 (370)
T ss_pred ce--EEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeecc
Confidence 64 68999876552 22211 0 1112234566777 5666665 56899999999987665443 47888899999
Q ss_pred EcCCCc-EEEEeecCCceEEEEeeecCCc-eEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCC-------
Q psy4754 164 VSPDGT-AFSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLK------- 233 (304)
Q Consensus 164 ~sp~~~-~las~s~d~~i~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~------- 233 (304)
|+|+.+ ++++|+.|+.+ ++||.|..+ ++...+.+. .-++++.|+|. .+++++|++|..|.+|....
T Consensus 222 fNpnkq~~lvt~gDdgyv--riWD~R~tk~pv~el~~Hs--HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 222 FNPNKQHILVTCGDDGYV--RIWDTRKTKFPVQELPGHS--HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred CCCCceEEEEEcCCCccE--EEEeccCCCccccccCCCc--eEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence 999886 47899999985 799998765 355555554 46899999997 67888999999999994210
Q ss_pred ----------------------ceeeEEeeccccceEEEEEcc-CCCEEEEeecCCeeeeccccccchh
Q psy4754 234 ----------------------CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 234 ----------------------~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
...+.++..|+..|++++||. |.=.||+-|+||.+.+-...+.+++
T Consensus 298 ~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~~ky 366 (370)
T KOG1007|consen 298 EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRFLKY 366 (370)
T ss_pred ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChhhhh
Confidence 112446778999999999987 5568899999999998876655543
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=132.55 Aligned_cols=249 Identities=14% Similarity=0.153 Sum_probs=173.1
Q ss_pred eeeccccccc--eeEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeeeeec-CCcCcEEEEEECCCCCeEEEEeCC
Q psy4754 19 CYKKDSILFG--ATSVDFSVSGRLLFAGYNDYTINVWDSLKC------CRVNHLM-GHENRVSCLQVSPDGTAFSSGSWD 89 (304)
Q Consensus 19 ~~~~~~~~~~--i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~------~~~~~~~-~h~~~V~~l~~s~d~~~l~sgs~D 89 (304)
.++++...|. |.++.|+.++++|++|+.|-.+++|.+... +++.... .|...|.||+|....+.|+||+.+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3444444444 899999999999999999999999997532 3343332 356899999999988999999999
Q ss_pred CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-ccee--ccCcccceeEEEEcC
Q psy4754 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNH--LMGHENRVSCLQVSP 166 (304)
Q Consensus 90 ~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~--~~~h~~~v~~v~~sp 166 (304)
+++ .+-|+.+.+.+..+..+.....+-.+..+|..+.|++.+.++.|.+||.+..+ ++.- ..........+-|+|
T Consensus 127 ~~V--I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 127 GTV--IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred cee--EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 996 58999998888777655433334567788988999999999999999988655 2211 112233345667888
Q ss_pred CC-cEEEEeecCCceEEEEeeecCCce------------------------------------------------EEEee
Q psy4754 167 DG-TAFSSGSWDTTLRCRLFDLRADKE------------------------------------------------VACYK 197 (304)
Q Consensus 167 ~~-~~las~s~d~~i~i~~~d~~~~~~------------------------------------------------~~~~~ 197 (304)
.. .++++.+..+-+ .+||.+..+. ..+++
T Consensus 205 ~~P~Li~~~~~~~G~--~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 205 ETPALILVNSETGGP--NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred CCceeEEeccccCCC--CceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 55 456666654443 4677653210 00111
Q ss_pred cCcee------eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------------------ceeeEEeeccccceE
Q psy4754 198 KDSIL------FGATSVDFSVSGRLLFAGYNDYTINVWDSLK-----------------------CCRVNHLMGHENRVS 248 (304)
Q Consensus 198 ~~~~~------~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-----------------------~~~~~~~~~h~~~i~ 248 (304)
..... ..+.+++|..| ..+++|+.+-.|++|.+.. ...+..++||..-+.
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 11000 01223444333 3488999999999997542 112455789999999
Q ss_pred EEEEccCCCEEEEeecCCeeeecc
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
.+.|+|...+|++.+-.+.+++|-
T Consensus 362 QVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 362 QVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ceeecCCcceEeccchhhheeccc
Confidence 999999999999999999999993
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-16 Score=141.12 Aligned_cols=265 Identities=18% Similarity=0.142 Sum_probs=182.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCcee--eee----ecCCcCcEEEEEEC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCR--VNH----LMGHENRVSCLQVS 77 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~--~~~----~~~h~~~V~~l~~s 77 (304)
.+-+||+..... |..-.+. .-.|.|+.|+|.. .++|.|..+|+|.+||+..+.. ... .-.|..+|+.+.|-
T Consensus 223 ~~~vW~~~~p~~-Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 223 VLLVWSLKNPNT-PELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred eEEEEecCCCCC-ceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 477899888721 2222121 1248999999964 5788999999999999876654 221 23588999999998
Q ss_pred CCCCe--EEEEeCCCceEEEEeeeCCCeeE-eE--E--ec-----cceeeceeeeEEcCC-CCEEEEEeCCCeEEEec--
Q psy4754 78 PDGTA--FSSGSWDTTLRCRLFDLRADKEV-AC--Y--KK-----DSILFGATSVDFSVS-GRLLFAGYNDYTINVWD-- 142 (304)
Q Consensus 78 ~d~~~--l~sgs~D~~i~~~~wd~~~~~~~-~~--~--~~-----~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd-- 142 (304)
.+... ++|+|.||.| ..|+++.-... .. . .. .....+++++.|.+. ...|+.|+.+|.|..-.
T Consensus 301 ~~~~~~~f~s~ssDG~i--~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSI--CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ccCCCCceEEEecCCcE--eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 75544 9999999996 57887632221 10 0 11 011235678888874 45688899999998833
Q ss_pred -CCcc-----ccceeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeec-CCceEEEeecCceeeeeeEEEEcCCC
Q psy4754 143 -SLKC-----CRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLR-ADKEVACYKKDSILFGATSVDFSVSG 214 (304)
Q Consensus 143 -~~~~-----~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~g 214 (304)
.... +.+..+..|.++|.++.++|-+. .|.+++ |-++ ++|... ...++..+... ...+++++|||.-
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~v--riWs~~~~~~Pl~~~~~~--~~~v~~vaWSptr 453 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTV--RIWSEDVIASPLLSLDSS--PDYVTDVAWSPTR 453 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-ccee--EeccccCCCCcchhhhhc--cceeeeeEEcCcC
Confidence 2211 12446678899999999999764 455655 7775 689876 44454443322 2347899999997
Q ss_pred CE-EEEEeCCCcEEEEeCCCc--eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 215 RL-LFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 215 ~~-l~sg~~d~~i~iwd~~~~--~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
.- ++++..||.+.+||+... .++.+..-+....+.+.|+++|+.|+.|...|++.++++.....
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence 64 556777999999997543 33444444566778888899999999999999999999866553
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=134.11 Aligned_cols=139 Identities=20% Similarity=0.260 Sum_probs=109.6
Q ss_pred CCceeEEeeccccc-------eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC--------C--------c
Q psy4754 2 GKNHCRLFDLRADK-------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--------K--------C 58 (304)
Q Consensus 2 ~~~~v~~wd~~~~~-------~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--------~--------~ 58 (304)
||..||||-++.+. ..+..-+..|...|+++.|+|+|.+||+|+.+|+|.+|-.. + -
T Consensus 34 ~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w 113 (434)
T KOG1009|consen 34 GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKW 113 (434)
T ss_pred CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccce
Confidence 68899999888763 22333334555569999999999999999999999999976 2 1
Q ss_pred eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
...+.+++|...|..++|+||++++++++.|.++ ++||+..++.......+.+ -+..+++.|-++++++-+.|...
T Consensus 114 ~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~--~l~Dv~~G~l~~~~~dh~~--yvqgvawDpl~qyv~s~s~dr~~ 189 (434)
T KOG1009|consen 114 VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSV--RLWDVHAGQLLAILDDHEH--YVQGVAWDPLNQYVASKSSDRHP 189 (434)
T ss_pred EEEEEecccccchhhhhccCCCceeeeeeccceE--EEEEeccceeEeecccccc--ccceeecchhhhhhhhhccCccc
Confidence 2345678899999999999999999999999994 7999999988776655543 24677888888888888777766
Q ss_pred EEecCC
Q psy4754 139 NVWDSL 144 (304)
Q Consensus 139 ~iwd~~ 144 (304)
+.+.+.
T Consensus 190 ~~~~~~ 195 (434)
T KOG1009|consen 190 EGFSAK 195 (434)
T ss_pred ceeeee
Confidence 666543
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=133.44 Aligned_cols=220 Identities=18% Similarity=0.246 Sum_probs=159.2
Q ss_pred ceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-------eeeeeecCCcCcEEEEEECCCC-CeEEEEeCCCceEEEEee
Q psy4754 28 GATSVDFSV-SGRLLFAGYNDYTINVWDSLKC-------CRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 28 ~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd 98 (304)
.|..++|+| +...||+||.|.+|.||.+..+ +++..|.+|...|--++|+|.. +.|+|+|.|.++ .+||
T Consensus 83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v--~iWn 160 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV--SIWN 160 (472)
T ss_pred cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE--EEEe
Confidence 377789998 4568999999999999998654 3456678999999999999964 688999999996 6899
Q ss_pred eCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc-eeEEEEcCCCcEEEEee--
Q psy4754 99 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-VSCLQVSPDGTAFSSGS-- 175 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~las~s-- 175 (304)
+.++..+..+... ..+.++.|+.+|.++++.+.|..|+|||.++++.+.+-.+|.+. ...+.|-.++..+.||-
T Consensus 161 v~tgeali~l~hp---d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr 237 (472)
T KOG0303|consen 161 VGTGEALITLDHP---DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSR 237 (472)
T ss_pred ccCCceeeecCCC---CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccc
Confidence 9999887776632 24678999999999999999999999999999888777778763 44556777888555553
Q ss_pred -cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCcee----eEEeeccccceEE
Q psy4754 176 -WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCR----VNHLMGHENRVSC 249 (304)
Q Consensus 176 -~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~sg~~d~~i~iwd~~~~~~----~~~~~~h~~~i~~ 249 (304)
.+.. +-+||....+.-..+..-+...++.--=|.||... +++|-.|+.|+-|.+....+ +.++. ...+-..
T Consensus 238 ~seRq--~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG 314 (472)
T KOG0303|consen 238 MSERQ--IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRG 314 (472)
T ss_pred ccccc--eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc-cCCcccc
Confidence 2444 46898765443222221111123333336777665 56677899999998876543 22232 2345566
Q ss_pred EEEccC
Q psy4754 250 LQVSPD 255 (304)
Q Consensus 250 l~~sp~ 255 (304)
+.|.|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 777774
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-18 Score=153.46 Aligned_cols=231 Identities=20% Similarity=0.306 Sum_probs=177.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.|+|+.|.-.|.++++|+.|..++||++.++.++...+||.+.|+.++.+.+...++++|.|..| ++|.+..+.++..
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI--rvWrl~~~~pvsv 269 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI--RVWRLPDGAPVSV 269 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceE--EEEecCCCchHHH
Confidence 39999999999999999999999999999999999999999999999999988899999999885 7899999888776
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-----cCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-----MGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
+..+. .++++++|+|-. +.+.||++++||.+- ..+... ..-..-+.++.|...+..++|++.|+.-
T Consensus 270 Lrght--gavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea-- 340 (1113)
T KOG0644|consen 270 LRGHT--GAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA-- 340 (1113)
T ss_pred Hhccc--cceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCccc--
Confidence 66553 357899999844 778899999999761 111110 1122456677788888899999999874
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC-CCEEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD-GTAFS 260 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-g~~la 260 (304)
..|...-.. ++... ...+.++.+ ..+.+++-.+..+.+|++.++..++-+.+|...+..|.++|- .+...
T Consensus 341 ~n~e~~~l~----~~~~~----lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 341 RNHEFEQLA----WRSNL----LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred ccchhhHhh----hhccc----eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 455442211 11111 111112222 255666767778889999999999999999999999999994 45566
Q ss_pred EeecCCeeeeccccccc
Q psy4754 261 SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 261 sgs~D~~i~~~~~~~~~ 277 (304)
++++|+.+.+||.-++-
T Consensus 413 sag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred hccCCCceEeeecccCC
Confidence 89999999999886643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-16 Score=140.32 Aligned_cols=213 Identities=16% Similarity=0.090 Sum_probs=144.1
Q ss_pred CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC
Q psy4754 47 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125 (304)
Q Consensus 47 dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 125 (304)
+.+|.+||..... .+.+..|...+...+|+|||+.|+..+.+. .-.+++||+.+++......... ......|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 5799999986443 455667888999999999999998877543 2235899997764322211111 1235789999
Q ss_pred CCEEEEEe-CCCeEEEe--cCCccccceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCce
Q psy4754 126 GRLLFAGY-NDYTINVW--DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 126 ~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~ 201 (304)
++.++.+. .+|.+.+| |+.++. ...+..+...+....|+|||+.++..+ .++...++.++..+... ... ...
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~- 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGR- 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCC-
Confidence 99888764 67776665 554443 445566777788899999999877655 46666544444443322 112 111
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
. ....|+|+|++|+..+.++ +.+||+.++........+ ...++.|+|||++|+.++.|+.+++|..
T Consensus 335 --~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 335 --G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred --C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 1 3467999999998887654 556998877543222222 3356789999999999999998887764
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=131.33 Aligned_cols=222 Identities=17% Similarity=0.259 Sum_probs=153.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeee---cCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s~ 78 (304)
-+.|||.|+.+++....+ ..|+..|+.+.|+|+. +++++||.|.+||+|++.+..++-.+ ++|.+.|.++.|++
T Consensus 114 ~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred eeEEEEEecchhhhccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 367999999998764332 3455569999999986 58899999999999999998876654 67999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEe------EEeccce---------eece-eeeEEcC--------CCCEEEEEeC
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVA------CYKKDSI---------LFGA-TSVDFSV--------SGRLLFAGYN 134 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~------~~~~~~~---------~~~~-~~~~~s~--------~~~~l~sg~~ 134 (304)
+|.+++|++.|.++ .+|++...+-.. .+..+.. .+.. +.-..+. -|+++++=+-
T Consensus 192 ~gd~i~ScGmDhsl--k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSL--KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceE--EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeeccc
Confidence 99999999999996 689987322111 0111100 0000 0111111 1678888888
Q ss_pred CCeEEEecCCc-ccc-------------ceeccCcccceeEEE--EcCCCcEEEEeecCCceEEEEeeecCCceE--EEe
Q psy4754 135 DYTINVWDSLK-CCR-------------VNHLMGHENRVSCLQ--VSPDGTAFSSGSWDTTLRCRLFDLRADKEV--ACY 196 (304)
Q Consensus 135 dg~i~iwd~~~-~~~-------------~~~~~~h~~~v~~v~--~sp~~~~las~s~d~~i~i~~~d~~~~~~~--~~~ 196 (304)
++.|..|...+ .+. +.++.-....|+-+. |.|-.+.+|.|.+.+.+ .+||++...+. .++
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v--~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV--YVWDLDNNEPPKCTTL 347 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE--EEEECCCCCCccCceE
Confidence 88999997521 111 112222334455555 45667889999999985 68999876552 122
Q ss_pred ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 197 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
........+...+|+.||.+|+...+|++|==||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2222223467889999999999999999987776
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.7e-15 Score=122.09 Aligned_cols=237 Identities=13% Similarity=0.106 Sum_probs=167.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.+....|..+...|..|+.|| -++|+.+..........-...|.-.-|+ ..+++-.+.+..-++++.+++....+..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEE
Confidence 355566888888999999887 6888887654422221112233333444 4566655555554567788887776655
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc---CcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
+.-.. .+.++.+. .+.++.+-.+. |.|||+++.+.+.++. .+...+.++++++.+.++|--+.-..-.|.+
T Consensus 84 ~~fpt---~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 84 IFFPT---SILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EecCC---ceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 43322 23455554 45677666554 9999999988877654 3455576777777766877443322333579
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCceeeEEeecc--ccceEEEEEccCCCEEEE
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-INVWDSLKCCRVNHLMGH--ENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~-i~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~las 261 (304)
||+.+.+.+..+..|. ..+-+++|+|+|.+||++++.|+ ||||.+.+++++.++..- ...|.+|+|+|++.+|++
T Consensus 158 ~d~~nl~~v~~I~aH~--~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHK--GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEcccceeeeEEEecC--CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999988888887766 35689999999999999999998 899999999999998763 357999999999999999
Q ss_pred eecCCeeeeccccc
Q psy4754 262 GSWDTTLRDEESKN 275 (304)
Q Consensus 262 gs~D~~i~~~~~~~ 275 (304)
.|.-.+|-++-+..
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 99999998775533
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=126.57 Aligned_cols=223 Identities=20% Similarity=0.265 Sum_probs=157.9
Q ss_pred CCCcEEEEeCCCc--e-eeeeecCCcCcEEEEEECC-CCCeEEEEeCC-----CceEEEEeeeCCCeeE------eEE-e
Q psy4754 46 NDYTINVWDSLKC--C-RVNHLMGHENRVSCLQVSP-DGTAFSSGSWD-----TTLRCRLFDLRADKEV------ACY-K 109 (304)
Q Consensus 46 ~dg~v~iwd~~~~--~-~~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D-----~~i~~~~wd~~~~~~~------~~~-~ 109 (304)
.|..|.+-+.... + ..+.|..|.+.|+.|+-+| |.+.|+|+-.| ..-...+|.+...... .+. .
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3677777776543 2 2345777899999999999 45566666432 1223468888643221 111 0
Q ss_pred cc-ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-ceec-----cCcccceeEEEEcC--CCcEEEEeecCCce
Q psy4754 110 KD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-VNHL-----MGHENRVSCLQVSP--DGTAFSSGSWDTTL 180 (304)
Q Consensus 110 ~~-~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~-----~~h~~~v~~v~~sp--~~~~las~s~d~~i 180 (304)
.+ ..+..+.++.|.|++..+++.. |..|.+|++..... +..+ .+|+...++-+|+| |++.+++.+ |+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcE
Confidence 11 1122467999999999888765 89999999876554 2222 24566778888999 778888765 6674
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC-ceeeEEeeccccceEEEEEccC-CC
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPD-GT 257 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~-g~ 257 (304)
+.||+|+.+....+.... ...+..+.|+|+-+ +|+++++|+.|+|||.+. ..++.++.+|.-+|+++.|+|. .+
T Consensus 196 --~~~D~RT~~~~~sI~dAH-gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 196 --QFWDLRTMKKNNSIEDAH-GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred --EEEEccchhhhcchhhhh-cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 789999877655553221 23578999999966 577899999999999864 4568889999999999999995 46
Q ss_pred EEEEeecCCeeeeccc
Q psy4754 258 AFSSGSWDTTLRDEES 273 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~ 273 (304)
.|.|||.|..|-+|-.
T Consensus 273 LiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCA 288 (370)
T ss_pred EEEecCCCceeEEEec
Confidence 7889999999998843
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=133.36 Aligned_cols=201 Identities=21% Similarity=0.201 Sum_probs=142.1
Q ss_pred EEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 72 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 72 ~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
.+++|+.+|..|++|+.|+++ |+|+..+...+.....+ ...+.++.|+||++.+++-+.| ..+||+..++.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~l--Rv~~~Ps~~t~l~e~~~--~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTL--RVWEWPSMLTILEEIAH--HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceE--EEEecCcchhhhhhHhh--cCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 678999999999999999996 78887665554433332 2246789999999999999999 999999988866554
Q ss_pred cc--CcccceeEEEEcCCC---cEEEEeecCCceEEEEeeecCCce---EEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 152 LM--GHENRVSCLQVSPDG---TAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 152 ~~--~h~~~v~~v~~sp~~---~~las~s~d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
.. +-......+-|+.|+ .+++.++....-.++.+++..-+. +...+.-.....+++++.+++|++++.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 33 222234556677665 333333322222234555432111 1111111111257899999999999999999
Q ss_pred CcEEEEeCCCceeeEEee-ccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 224 YTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|.|.|++..+.+++...+ .|..-|+.|.|+||.+++++-|.|.++++.-+.-++
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 999999998887776654 499999999999999999999999998877554433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-15 Score=133.28 Aligned_cols=238 Identities=13% Similarity=0.034 Sum_probs=154.6
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee---CCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~---~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
.++.+||....+..... .....+.+.+|+|||+.|+..+ .+..+.+|++.+++... +....+.+...+|+|||
T Consensus 179 ~~l~~~d~dg~~~~~lt---~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCEEee---cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCC
Confidence 36888888776543321 1223478999999999887543 34579999998775322 22223334568999999
Q ss_pred CeEEEE-eCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-CeEEEe--cCCccccceeccCcc
Q psy4754 81 TAFSSG-SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-YTINVW--DSLKCCRVNHLMGHE 156 (304)
Q Consensus 81 ~~l~sg-s~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-g~i~iw--d~~~~~~~~~~~~h~ 156 (304)
+.|+.. +.++...+++||+.+++........ .......|+||++.++..+.+ +...+| |+.++. ...+..+.
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~---~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-~~~lt~~~ 330 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-PQRITWEG 330 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCC---CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-eEEeecCC
Confidence 977744 4566555789999876544322221 124567899999988776654 444454 655443 22333333
Q ss_pred cceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc---EEEEeCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT---INVWDSL 232 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~---i~iwd~~ 232 (304)
.......|+|||+.++..+. ++...+++||+.+++... +.... ......|+|||++|+..+.++. +.++++
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 45567889999998887654 333446788987765432 22111 1245679999999999887764 566666
Q ss_pred CceeeEEeeccccceEEEEEcc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp 254 (304)
++.....+.+|.+.+...+|+|
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEECccCCCCcCCcccCC
Confidence 3445666778888899999987
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=136.65 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=159.8
Q ss_pred CceeEEeeccc---c---ceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----------eeeeeecC
Q psy4754 3 KNHCRLFDLRA---D---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----------CRVNHLMG 66 (304)
Q Consensus 3 ~~~v~~wd~~~---~---~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----------~~~~~~~~ 66 (304)
|+++++|+++. . ...+.+....|...|.|++..+++..+++|+.||+|+.|++... ....++.|
T Consensus 315 d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G 394 (577)
T KOG0642|consen 315 DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG 394 (577)
T ss_pred ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence 67899999932 1 22344444556666999999999999999999999999965421 23456789
Q ss_pred CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCc
Q psy4754 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 67 h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~ 145 (304)
|.+.|+.+++|+....|++++.|+++ ++|+.....+ ..+.......-..++++-... ...++...-+.-.++++..
T Consensus 395 htdavw~l~~s~~~~~Llscs~DgTv--r~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 395 HTDAVWLLALSSTKDRLLSCSSDGTV--RLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred cccceeeeeecccccceeeecCCceE--EeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 99999999999999999999999995 7999876655 222211111112344443222 1222222222222333333
Q ss_pred cccceecc--C-----cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEE
Q psy4754 146 CCRVNHLM--G-----HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 146 ~~~~~~~~--~-----h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 218 (304)
.+.+..+. . -...+.-+..+|..-+..++..|..| +++|..+++.+.....+. -.++++++.|+|.+|+
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I--r~~dn~~~~~l~s~~a~~--~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI--RFFDNKTGKILHSMVAHK--DSVTSLAIDPNGPYLM 547 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce--ecccccccccchheeecc--ceecceeecCCCceEE
Confidence 33222221 1 12346778889988899999999986 689988887765544433 3578999999999999
Q ss_pred EEeCCCcEEEEeCCCceeeEEeeccc
Q psy4754 219 AGYNDYTINVWDSLKCCRVNHLMGHE 244 (304)
Q Consensus 219 sg~~d~~i~iwd~~~~~~~~~~~~h~ 244 (304)
+|+.|+.+++|......++.....|.
T Consensus 548 s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 548 SGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecCCceeehhhccchheeecccccc
Confidence 99999999999987766666665554
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-15 Score=121.58 Aligned_cols=238 Identities=16% Similarity=0.103 Sum_probs=173.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC-
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD- 102 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~- 102 (304)
..|+|.+|++|+..+|.+-+...|.||..... +..+++..|...|++++|+|.++.|++|+.|+. ..+|....+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn--ayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN--AYVWTQPSGG 88 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC--ccccccCCCC
Confidence 45999999999999999999999999998765 467888999999999999999999999999988 468987432
Q ss_pred e---eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc----eeccCcccceeEEEEcCCCcEEEEee
Q psy4754 103 K---EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV----NHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 103 ~---~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
+ .+..++. ...++++.|+|.++.|+.|+....|.+|-.+.+..- ....-+...|.+++|+|++-++++||
T Consensus 89 ~WkptlvLlRi---NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 89 TWKPTLVLLRI---NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred eeccceeEEEe---ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 1 1222222 235689999999999999999999999875543211 11234567899999999999999999
Q ss_pred cCCceEEEEeee-----cC-------------CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce-e
Q psy4754 176 WDTTLRCRLFDL-----RA-------------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-R 236 (304)
Q Consensus 176 ~d~~i~i~~~d~-----~~-------------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~-~ 236 (304)
.|+.. +++.. ++ ++.+..+. .....+..+.|+|+|+.|+-.+.|.++.+=|...+. .
T Consensus 166 ~D~k~--rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 166 TDGKC--RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cCcce--eEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 99974 56642 11 01111111 112347889999999999999999999998866553 2
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+.......-+-.++.|-.+ ..++.+++|+.-.++...
T Consensus 242 v~~~~~~~lP~ls~~~ise-~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE-NSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred ccchhhccCCceeeEeecC-CceeecCCCCCceEEEec
Confidence 3333333467788888765 445566677665555443
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=122.95 Aligned_cols=207 Identities=17% Similarity=0.165 Sum_probs=157.8
Q ss_pred cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC-CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK- 145 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~- 145 (304)
..+|+|-+|++|+..++.+-....+.|.-++-.+ .+..++++.+.. .++.++++|..+.+++++.|...++|....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~--~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK--IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc--ceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 4789999999999999998887776544343333 445666666543 467899999999999999999999998733
Q ss_pred --cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 146 --CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 146 --~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
..+...+..|+..+++|.|+|.++.||+||.-+.|.|..|+-++.--+..+-...+...|++++|+|++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 345556778899999999999999999999988876655555544333332222233457999999999999999999
Q ss_pred CcEEEEeC-----CC-------------ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 224 YTINVWDS-----LK-------------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 224 ~~i~iwd~-----~~-------------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+..+||.. ++ ++.+.++..-.++|..+.|+|.|..|+=.++|.++.+-|...+
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999852 11 2233344345689999999999999999999999987766544
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=130.56 Aligned_cols=221 Identities=21% Similarity=0.267 Sum_probs=150.3
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCceeeeee--cC--CcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeEEe
Q psy4754 35 SVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MG--HENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYK 109 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~--~~--h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~ 109 (304)
.|.+--++.|-.-|.|.+.|....+..+.+ .. -+..|+|+.|-|.+. .++.+-+++.+ .++|.. +.+-.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnl--yly~~~----~~~~~ 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNL--YLYDKE----IVCGA 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCce--EEeecc----ccccC
Confidence 345667889999999999998763322212 11 247899999999554 55555667774 466651 11111
Q ss_pred ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecC
Q psy4754 110 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 189 (304)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~ 189 (304)
.+ .+....+++..+.....-+ -.+..++....--++.|...+|+|||+++|+.|+|+.+ |+||..+
T Consensus 256 t~------p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfL--RvF~fdt 321 (636)
T KOG2394|consen 256 TA------PSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFL--RIFDFDT 321 (636)
T ss_pred CC------CcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceE--EEeeccH
Confidence 11 1122234455444332110 01112333222234578999999999999999999996 6888877
Q ss_pred CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc---------------
Q psy4754 190 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--------------- 254 (304)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp--------------- 254 (304)
.+.+...+.- ..+..+++|||||+||++|++|--|.||.+..++.+..-.||..+|+.|+|.|
T Consensus 322 ~eLlg~mkSY--FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~ 399 (636)
T KOG2394|consen 322 QELLGVMKSY--FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMD 399 (636)
T ss_pred HHHHHHHHhh--ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccccccc
Confidence 6655443321 23468999999999999999999999999999999999999999999999983
Q ss_pred ----------------C----C-------------CEEEEeecCCeeeeccccccc
Q psy4754 255 ----------------D----G-------------TAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 255 ----------------~----g-------------~~lasgs~D~~i~~~~~~~~~ 277 (304)
+ + -.|.|.+.|..+-|||+..+-
T Consensus 400 ~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 400 STFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 1 1 157788899999999986643
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-14 Score=116.65 Aligned_cols=178 Identities=16% Similarity=0.221 Sum_probs=133.0
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC-CCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~-~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
..|.|||=.+..++..+. ...+|.++.++++. |+..- ... +.+|.+. +.+.++++......-+.+++.-+.+.
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r--iVvvl-~~~--I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR--IVVVL-ENK--IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe--EEEEe-cCe--EEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 579999966666665543 56889999998763 43332 334 4688886 45566655433212233333333333
Q ss_pred CEEEE-EeCCCeEEEecCCcccc--ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceee
Q psy4754 127 RLLFA-GYNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 203 (304)
Q Consensus 127 ~~l~s-g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~ 203 (304)
..||. |..-|.|.+-|+..... ...+.+|...|.||+++-+|..+||+|..|++ ||+||.++++.+..++......
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL-IRIFdt~~g~~l~E~RRG~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL-IRIFDTEDGTLLQELRRGVDRA 227 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE-EEEEEcCCCcEeeeeecCCchh
Confidence 34443 66789999999865443 35678999999999999999999999999999 7999999999999887766566
Q ss_pred eeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 204 GATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
.+.+++|||++.+|+++|+.|+++||.+.
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 78999999999999999999999999754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-14 Score=129.62 Aligned_cols=217 Identities=16% Similarity=0.074 Sum_probs=142.3
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
.+|.+||.. +...+.+..|...+.+.+|+|||+.|+..+.+. .-.+++||+..++......... ......|+||+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g---~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG---INGAPSFSPDG 259 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC---CccCceECCCC
Confidence 469999985 444445666778899999999999988877432 2336789997765433221111 12357899999
Q ss_pred CEEEE-EeCCC--eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCcee
Q psy4754 127 RLLFA-GYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 127 ~~l~s-g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
+.++. .+.++ .|.+||+.+++ ...+..+.......+|+||++.++..+. ++...++++|+.+++.........
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~-- 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN-- 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC--
Confidence 97754 45555 59999987654 3445556555667899999998887664 445455677776655322211111
Q ss_pred eeeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC-C--eeeecccc
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDY---TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-T--TLRDEESK 274 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~---~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D-~--~i~~~~~~ 274 (304)
.....+|+|+|++|+..+.++ .|.+||..++... .+. +........|+|||+.|+..+.+ + .|.+++..
T Consensus 337 -~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 -YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred -CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 124678999999988765432 5899998776543 343 33345567999999998877764 2 34455543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-13 Score=118.69 Aligned_cols=269 Identities=18% Similarity=0.166 Sum_probs=164.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
++++|.+.|..+.+.+..++..... -..+.|+|||++++.++.||.|.++|+.+.+.+..++.-. .-.++++++||+
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~--h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~ 90 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP--HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGK 90 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE--EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc--eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCC
Confidence 5789999999999888776643221 2447799999999999999999999999999888886543 457899999999
Q ss_pred eEEEEe-CCCceEEEEeeeCCCeeEeEEecccee-----eceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccce-ecc
Q psy4754 82 AFSSGS-WDTTLRCRLFDLRADKEVACYKKDSIL-----FGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVN-HLM 153 (304)
Q Consensus 82 ~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~-~~~ 153 (304)
+++.+. .++.+ .++|..+.+.+..+...... ..+..+..++....++.. -+.+.|.+-|......+. ...
T Consensus 91 ~~~v~n~~~~~v--~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 91 YVYVANYEPGTV--SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp EEEEEEEETTEE--EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred EEEEEecCCCce--eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 988775 46664 68999888777766433211 123456667777755544 445888887765543322 222
Q ss_pred CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce--------------------------------
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-------------------------------- 201 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-------------------------------- 201 (304)
..........|+|++++++.+..... ++-++|.++.+.+........
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn-~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSN-KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGT-EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred cccccccccccCcccceeeecccccc-eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 23345677899999998776543222 234666655443322210000
Q ss_pred --------------------eeeeeEEEEcCCCCEEEEE----eCCCcEEEEeCCCceeeEEeeccc-cceEEEEEccCC
Q psy4754 202 --------------------LFGATSVDFSVSGRLLFAG----YNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDG 256 (304)
Q Consensus 202 --------------------~~~~~~~~~s~~g~~l~sg----~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g 256 (304)
..+...+..+|+++++.+. ....+|.++|..+.+.+.++.... .++..+.|++||
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG 327 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG 327 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS
T ss_pred CCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC
Confidence 0011346779999999987 445789999999987777765322 369999999999
Q ss_pred CEEEEeecCC--eeeecccccc
Q psy4754 257 TAFSSGSWDT--TLRDEESKNR 276 (304)
Q Consensus 257 ~~lasgs~D~--~i~~~~~~~~ 276 (304)
+++-.+.+|+ .|.++|...-
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTT
T ss_pred CEEEEEEecCCCEEEEEECCCc
Confidence 9877665554 5999986543
|
... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-14 Score=128.55 Aligned_cols=238 Identities=16% Similarity=0.074 Sum_probs=152.3
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
.+|.+||..+.+.... ......+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+...+.+|+|||
T Consensus 184 ~~l~i~D~~g~~~~~l---t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNPQTI---LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCCceEe---ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC
Confidence 4688999876543322 1223347889999999988876643 469999998775432 33344455678999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CCe--EEEecCCccccceeccCcc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYT--INVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~--i~iwd~~~~~~~~~~~~h~ 156 (304)
+.|+ +.+.++.-.+++||+.+++... +..+.. ......|+||+++++..+. ++. |.++|+.+++. ..+..+.
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g 335 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQG 335 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-CccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCC
Confidence 8664 6666666567889998765432 222211 1246789999998887664 444 66667655432 2222233
Q ss_pred cceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC---CcEEEEeCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSL 232 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d---~~i~iwd~~ 232 (304)
......+|+|||+.++..+. ++...+.+||+.+++.. .+.... ......|+|+|++++..+.+ ..+.+++..
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 34556899999999887654 33345678998776543 222211 12456899999988776543 357777774
Q ss_pred CceeeEEeeccccceEEEEEcc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp 254 (304)
. .....+..+.+.+...+|+|
T Consensus 412 g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 G-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C-CceEEcccCCCCCCCCccCC
Confidence 3 34455555667777788876
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-13 Score=114.18 Aligned_cols=258 Identities=21% Similarity=0.279 Sum_probs=162.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCc----eeee----------eecC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKC----CRVN----------HLMG 66 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~----~~~~----------~~~~ 66 (304)
.|..||+||-+. ++..+++... .-.|+|++|-|.+ +.|+.|...| |.+|....- ..++ .-.+
T Consensus 118 nddvVriy~kss-t~pt~Lks~s-QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pg 194 (445)
T KOG2139|consen 118 NDDVVRIYDKSS-TCPTKLKSVS-QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPG 194 (445)
T ss_pred cCcEEEEeccCC-CCCceecchh-hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCC
Confidence 588999999988 5555555433 2349999999965 5677776665 889996421 1111 1124
Q ss_pred CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEec-CCc
Q psy4754 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLK 145 (304)
Q Consensus 67 h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd-~~~ 145 (304)
| .+|+++.|++||..|++++.+..- +.+||..++..+...... ..+++-+.||||+.+++++.-|+..++|. .++
T Consensus 195 h-~pVtsmqwn~dgt~l~tAS~gsss-i~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 195 H-NPVTSMQWNEDGTILVTASFGSSS-IMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred C-ceeeEEEEcCCCCEEeecccCcce-EEEEcCCCCCcccccccC--CCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 4 789999999999999999976543 589999987766544222 23456789999999999999999999994 333
Q ss_pred cccceeccCcccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCce------------EE---Eee-----cC--cee
Q psy4754 146 CCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKE------------VA---CYK-----KD--SIL 202 (304)
Q Consensus 146 ~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~------------~~---~~~-----~~--~~~ 202 (304)
....+-..+ .++|..-+|+|+|..+. +++.... +|.+...+. +. .++ +. ..-
T Consensus 271 wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~----lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~c 345 (445)
T KOG2139|consen 271 WTKERWILG-SGRVQTACWSPCGSFLLFACSGSPR----LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCC 345 (445)
T ss_pred ceecceecc-CCceeeeeecCCCCEEEEEEcCCce----EEEEeecCCCccccCcccceeeeeeccchhhhhhcCccccc
Confidence 333332222 34899999999998655 5554443 343322110 00 000 00 001
Q ss_pred eeeeEEEEcCCCCEEEEEeCCC--------cEEEEeCCCceeeEE-eecc--ccceEEEEEcc---CCCEEEEeecCCee
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDY--------TINVWDSLKCCRVNH-LMGH--ENRVSCLQVSP---DGTAFSSGSWDTTL 268 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~--------~i~iwd~~~~~~~~~-~~~h--~~~i~~l~~sp---~g~~lasgs~D~~i 268 (304)
.++.+++|.|.|++||+--..+ .|.+||....-.+.- +.|. ......+.|+| ++..|..+-.-+.|
T Consensus 346 geaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGri 425 (445)
T KOG2139|consen 346 GEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRI 425 (445)
T ss_pred CccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCce
Confidence 2457899999999999965433 366787654322211 1121 11234566665 45666666555666
Q ss_pred eec
Q psy4754 269 RDE 271 (304)
Q Consensus 269 ~~~ 271 (304)
.=+
T Consensus 426 q~y 428 (445)
T KOG2139|consen 426 QRY 428 (445)
T ss_pred Eee
Confidence 544
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-15 Score=128.07 Aligned_cols=226 Identities=14% Similarity=0.216 Sum_probs=148.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEE------EEEC--CCCCeEEEEeCCCceEEEEeeeC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC------LQVS--PDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~------l~~s--~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
+.|+.|+.+...+.+++.+..++-||+.+ .....+....+-|.. ..-- .....|+.++.||.+.+ .+ +
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i--l~-k 92 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI--LN-K 92 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE--ec-c
Confidence 67899988877776665554444444432 221111111111111 1111 11235777778887532 22 1
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
.++..+....+. ..+.+-.|+|||.-+++++.||.|++|. +++....++.....+|.|++|.|+.+.++-|..++.
T Consensus 93 ~~rVE~sv~AH~--~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~- 168 (737)
T KOG1524|consen 93 SARVERSISAHA--AAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI- 168 (737)
T ss_pred cchhhhhhhhhh--hhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeE-
Confidence 222222222222 2355678999999999999999999998 444433445556678999999999887777665553
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
.+=.+.-...+..++.++. -+.++.|+|..+++++|++|-..+|||.. |..+..-..|+-+|++++|+|+ ..++
T Consensus 169 --~IKpL~~n~k~i~WkAHDG--iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 169 --SIKPLAANSKIIRWRAHDG--LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred --EEeecccccceeEEeccCc--EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-ccee
Confidence 3445554455666777764 46899999999999999999999999964 4566666679999999999999 8888
Q ss_pred EeecCCeee
Q psy4754 261 SGSWDTTLR 269 (304)
Q Consensus 261 sgs~D~~i~ 269 (304)
.+|. .+.|
T Consensus 243 v~S~-nt~R 250 (737)
T KOG1524|consen 243 LWSY-NTAR 250 (737)
T ss_pred eeee-eeee
Confidence 8886 4555
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-16 Score=141.08 Aligned_cols=249 Identities=20% Similarity=0.209 Sum_probs=173.7
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|--||||..++..+++..+. |...|+.++.+.++.+++++|.|..|++|.+.++.++..+++|.+.|++|+|+|-.
T Consensus 211 d~lvKiwS~et~~~lAs~rG--hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-- 286 (1113)
T KOG0644|consen 211 DRLVKIWSMETARCLASCRG--HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-- 286 (1113)
T ss_pred cceeeeeeccchhhhccCCC--CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--
Confidence 44599999999988876553 33458999999888999999999999999999999999999999999999999954
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEE---eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccce
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACY---KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
+.+.|+++ ++||.+-.-.+... +... ...+.++-|-..+..+++|+.|+....|.+.. +..+...+
T Consensus 287 --sss~dgt~--~~wd~r~~~~~y~prp~~~~~-~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~------l~~~~~~l 355 (1113)
T KOG0644|consen 287 --SSSDDGTC--RIWDARLEPRIYVPRPLKFTE-KDLVDSILFENNGDRFLTGSRDGEARNHEFEQ------LAWRSNLL 355 (1113)
T ss_pred --cCCCCCce--EeccccccccccCCCCCCccc-ccceeeeeccccccccccccCCcccccchhhH------hhhhccce
Confidence 77889995 67877621111110 0000 01134566677788899999999988887542 22233333
Q ss_pred eEEEEcCCCc-EEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceee
Q psy4754 160 SCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 160 ~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~ 237 (304)
.-+.++.|-. +.+++-.+ +...+|++-++...+....+. -.+..+.++|-...+ .+++.||...|||+..+.++
T Consensus 356 if~t~ssd~~~~~~~ar~~--~~~~vwnl~~g~l~H~l~ghs--d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARND--HRLCVWNLYTGQLLHNLMGHS--DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred EEEeccccccccceeeeee--eEeeeeecccchhhhhhcccc--cceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 3344443332 23333223 234688888776655544333 245778899987654 45889999999999999888
Q ss_pred EEe-eccccceEEEEEccCCCEEEEeecCCeeeec
Q psy4754 238 NHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 238 ~~~-~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~ 271 (304)
+.+ .+| ..+..-+||+||+.++..-.=+.+.+.
T Consensus 432 k~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 432 KHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred eeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 765 455 456667999999988876555556554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-13 Score=121.76 Aligned_cols=218 Identities=13% Similarity=0.035 Sum_probs=141.0
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
..|.+||..... .+.+..+...+...+|+|||+.|+..+. .+.-.+++||+..++......... ......|+|||
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCC
Confidence 378888876443 3334446678999999999998876543 222336789987664332211111 12357899999
Q ss_pred CEEEEE-eCCC--eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCceEEEeecCcee
Q psy4754 127 RLLFAG-YNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 127 ~~l~sg-~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
+.++.. ..++ .|.+||+.++.. ..+..+...+....|+|||+.++..+.+ +...++.+|+.+++.... ....
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~-- 330 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWEG-- 330 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecCC--
Confidence 988765 3344 588899876543 3444455567889999999988877654 444556667766543222 1111
Q ss_pred eeeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe---eeeccccc
Q psy4754 203 FGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRDEESKN 275 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~---i~~~~~~~ 275 (304)
.......|+|||++|+..+.+ ..|.+||+.++.. ..+... .......|+|||+.|+..+.|+. +.+++.+.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 123467899999998886543 3588899877653 334321 22346789999999999998875 45555543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=124.61 Aligned_cols=239 Identities=16% Similarity=0.079 Sum_probs=146.5
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
..+.++|..+...... ......+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||
T Consensus 176 ~~L~~~D~dG~~~~~l---~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSA---LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEe---ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence 4566677644332211 1122347889999999988766543 459999998876433 33334556788999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CCeEEEecC--CccccceeccCcc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDS--LKCCRVNHLMGHE 156 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~--~~~~~~~~~~~h~ 156 (304)
+.|+ +.+.|+...++++|+..+. ...+..+.. ......|+|||+.++..+. ++...+|.+ .++. ...+..+.
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCC
Confidence 8776 5677887666666665443 222222211 1245679999998876654 466666653 3322 22222122
Q ss_pred cceeEEEEcCCCcEEEEeecCC-ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC-c--EEEEeCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-T--INVWDSL 232 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~-~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-~--i~iwd~~ 232 (304)
......+|+|||+.++..+.++ ...+.+||+.+++....... . ......|+|+|++|+..+.++ . +.+.+.
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T---RDESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C---CccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 3344678999999988766543 23467899887654332221 1 125678999999988876543 2 444454
Q ss_pred CceeeEEeeccccceEEEEEccC
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
.+.....+..+.+.+...+|+|-
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCceEEeecCCCCCCCCccCCC
Confidence 34444455556677777888873
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=124.42 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=136.1
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC-CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D-~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
..+.++|. ++...+.+..+...+.+.+|+|||+.|+..+.+ +.-.+++||+.+++......... ......|+||+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g---~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG---SNSAPAWSPDG 251 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC---CccceEECCCC
Confidence 46777776 344445555677889999999999988877643 33346899998775543221211 23467899999
Q ss_pred CEEEE-EeCCCeEEEec--CCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCcee
Q psy4754 127 RLLFA-GYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 127 ~~l~s-g~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
+.++. .+.++...+|. +... ....+..+........|+|||+.++..+. ++...++..++.+++.........
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~-- 328 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS-- 328 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC--
Confidence 98864 56777767765 3332 34445555555667889999998886664 455544555555544322211111
Q ss_pred eeeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDY---TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~---~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
.....+|+|+|++|+..+.++ .|.+||+.+++.. .+..+ .......|+|||++|+..+.++
T Consensus 329 -~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 329 -YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 123568999999998866543 5999998876543 33322 3446789999999999887654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=126.90 Aligned_cols=181 Identities=15% Similarity=0.258 Sum_probs=130.2
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...+.+-.|+|||.-|+|++.||.|++|+-.. -...++.....+|+|++|.|+++.++-+..+. + .+=.+....
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h-~--~IKpL~~n~ 177 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQGGH-I--SIKPLAANS 177 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEecCCe-E--EEeeccccc
Confidence 3444588999999999999999999999999642 22223444568999999999987665554443 2 222333333
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
.+-.++.+.. -+.++.|++.++.+++|+.|-..++||.. ++.+.+-..|..+|++++|.|+ +.++.+|..-. |
T Consensus 178 k~i~WkAHDG--iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~---R 250 (737)
T KOG1524|consen 178 KIIRWRAHDG--LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTA---R 250 (737)
T ss_pred ceeEEeccCc--EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeeeee---e
Confidence 3334454443 25789999999999999999999999954 5566677789999999999999 77777764321 2
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEE
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 228 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~i 228 (304)
+-.. .. ..+..++|||||..+++|...|.+.+
T Consensus 251 ~~~p---------~~----GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 251 FSSP---------RV----GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ecCC---------Cc----cceEEEEEcCCCceeeccccCceEEE
Confidence 1111 11 24578899999999999988887654
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=128.99 Aligned_cols=236 Identities=18% Similarity=0.226 Sum_probs=158.6
Q ss_pred EEcCCCCEEE--EeeCCCcEEEEeCCCcee-----eeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 33 DFSVSGRLLF--AGYNDYTINVWDSLKCCR-----VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 33 ~~~~~g~~l~--tg~~dg~v~iwd~~~~~~-----~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
-|+.+...+| -++.-|.|-||++.+--. +-.+. ....|+.+.|.| |.+.|+.++.|+.| ++|.+..+..
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i--~lWr~~a~gl 662 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQI--NLWRLTANGL 662 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceE--EEEEeccCCC
Confidence 3555555544 456789999999864221 11221 245799999999 77899999999985 7899864322
Q ss_pred E-------eEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 105 V-------ACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 105 ~-------~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
. ..+..+ ...|+++.|+|- .+.|++++.|.+|++||+.+......+.+|++.|..++|||||+.+|+.+.
T Consensus 663 ~e~~~tPe~~lt~h--~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 663 PENEMTPEKILTIH--GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CcccCCcceeeecc--cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence 1 122222 234788999984 457888999999999999998888889999999999999999999999999
Q ss_pred CCceEEEEeeecCCceEEEeecCcee-eeeeEEEEcCCCCEEEEEeCC----CcEEEEeCCCce--eeEEeeccc-cceE
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSIL-FGATSVDFSVSGRLLFAGYND----YTINVWDSLKCC--RVNHLMGHE-NRVS 248 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~sg~~d----~~i~iwd~~~~~--~~~~~~~h~-~~i~ 248 (304)
|+++ ++|+.++.+. ..+...... ..--.+.|.-+|+++++.+-| +.|.+||..+.. .+.+..--. -.+.
T Consensus 741 Dg~~--rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L 817 (1012)
T KOG1445|consen 741 DGTL--RVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL 817 (1012)
T ss_pred CceE--EEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc
Confidence 9996 6898876542 122221111 112356688899998876544 568888865421 222111000 0111
Q ss_pred EEEEccC-CCEEEEeecCCeeeecccccc
Q psy4754 249 CLQVSPD-GTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 249 ~l~~sp~-g~~lasgs~D~~i~~~~~~~~ 276 (304)
-=.|.+| +..|+||--|.+|-+++.-.+
T Consensus 818 vP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 818 VPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cccccCCCceEEEecCCCceEEEEEecCC
Confidence 1123444 457789989999999976443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-14 Score=112.91 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=87.5
Q ss_pred cccceeEEEEcCCCcEEEEee--cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC---CcEEEE
Q psy4754 155 HENRVSCLQVSPDGTAFSSGS--WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVW 229 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s--~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d---~~i~iw 229 (304)
..++|.+++|+|+++.||.+. .+.. +.+||++ .+.+..+... ..+.+.|+|+|++|++++.+ |.+.+|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~--v~lyd~~-~~~i~~~~~~----~~n~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAK--VTLYDVK-GKKIFSFGTQ----PRNTISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcc--cEEEcCc-ccEeEeecCC----CceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence 345799999999999877654 3444 5799997 5555555432 34789999999999998643 679999
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEEEeec------CCeeeecccccc
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW------DTTLRDEESKNR 276 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~------D~~i~~~~~~~~ 276 (304)
|..+.+++.+.. |. .++.++|||||++|++++. |..+++|+....
T Consensus 131 d~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 131 DVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999888887654 43 5789999999999999874 788899987544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-13 Score=122.56 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=152.0
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC---CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~---dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
..|.++|..+...... ..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||
T Consensus 182 ~~l~~~d~dg~~~~~l---t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGANVRYL---TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCCcEEE---ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence 3688888866543221 122334889999999998876653 478999999887543 344566677889999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CC--eEEEecCCccccceeccCcc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DY--TINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~ 156 (304)
+.|+ +.+.++...+++||+..+.... +..... ......|+||++.++..+. ++ .|.++|+.... ...+..+.
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~ 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGG 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEE-ccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCC
Confidence 8764 6677777667888987665433 222211 1345789999998887664 33 67888876543 23333344
Q ss_pred cceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC------CcEEEE
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND------YTINVW 229 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d------~~i~iw 229 (304)
..+....|+|||+.++..+.+ +...+.+||+.+... ..+... .......|+|||++|+....+ ..+.++
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 556678899999998876653 334467888755433 222221 124567899999988775442 246667
Q ss_pred eCCCceeeEEeeccccceEEEEEcc
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
|+..+.. ..+. ..+.+...+|+|
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCC
Confidence 7654433 3333 234456667766
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-14 Score=127.97 Aligned_cols=244 Identities=18% Similarity=0.202 Sum_probs=164.1
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC---eEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT---AFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~---~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
....|++|+++++.... ..|.||...++++++.+.+|..++.++.+.|... ++++++.||+| ++||...+..+.
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I--~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTI--RVWDWSDGELLK 96 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccE--EEecCCCcEEEE
Confidence 45679999998876644 4899999999999999999999999999988543 67899999996 689999888887
Q ss_pred EEeccceeeceeeeEEc-------------CCCCEEEE---EeCCCeEEEecCCccc--cceeccCcccceeEEEEcCCC
Q psy4754 107 CYKKDSILFGATSVDFS-------------VSGRLLFA---GYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s-------------~~~~~l~s---g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~ 168 (304)
.+..+.... ...+. .+....++ ....+.++-+.+.+.. +.....+|.. -.++.+++.+
T Consensus 97 t~~~~~~v~---~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~g 172 (792)
T KOG1963|consen 97 TFDNNLPVH---ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSG 172 (792)
T ss_pred EEecCCcee---EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCc
Confidence 776543221 11111 11111111 1111222222222111 1111223332 4567888888
Q ss_pred cEEEEeecCCceEEEEeeecCCceEEEee--cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----ceeeEEeec
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMG 242 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~----~~~~~~~~~ 242 (304)
+.....-.++. .+|...+........ ...+..+.++.++||.++++|+|..||.|.+|.-.. ......+.-
T Consensus 173 e~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 173 EFKGIVHMCKI---HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred eEEEEEEeeeE---EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 87777665553 467766543211111 111224468899999999999999999999995221 122344566
Q ss_pred cccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
|...|.+++|+++|.+|.||++.+-+-+|....+-++++-|
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPR 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPR 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccc
Confidence 99999999999999999999999999999887777666654
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-14 Score=126.58 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=152.2
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCee--EeEE--eccceeeceeeeEE
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKE--VACY--KKDSILFGATSVDF 122 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~--~~~~--~~~~~~~~~~~~~~ 122 (304)
+.+.+|++...........-..+|+++.|+|. .++++.|..+|.| .+||++.... .... ..+.+...+..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV--~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQV--VLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceE--EEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 57999998755222222224578999999994 5678888889995 7999986544 2221 22222334455555
Q ss_pred cCC--CCEEEEEeCCCeEEEecCCcccc-c-----eecc------CcccceeEEEEcC-CCcEEEEeecCCceEE-EEee
Q psy4754 123 SVS--GRLLFAGYNDYTINVWDSLKCCR-V-----NHLM------GHENRVSCLQVSP-DGTAFSSGSWDTTLRC-RLFD 186 (304)
Q Consensus 123 s~~--~~~l~sg~~dg~i~iwd~~~~~~-~-----~~~~------~h~~~v~~v~~sp-~~~~las~s~d~~i~i-~~~d 186 (304)
-.+ +..|++++.||.|..|+++.... . .... .-...+++++|.| +-..|+.|+.+|.|.. .-.+
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 443 34599999999999998654221 1 0111 1224578899987 4468999999998632 1112
Q ss_pred ecCCceEEEeecC----ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CceeeEEeeccccceEEEEEccC-CCEEE
Q psy4754 187 LRADKEVACYKKD----SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRVNHLMGHENRVSCLQVSPD-GTAFS 260 (304)
Q Consensus 187 ~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~-g~~la 260 (304)
.+... ...++.+ .+..++.++.++|-+..++..+.|-+++||... ...++..+..+...+++++|||- ...|+
T Consensus 380 ~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 380 YTPAP-EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred Ccccc-cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 22111 0111111 123467899999998877776669999999876 56677778888889999999995 46899
Q ss_pred EeecCCeeeeccccccc
Q psy4754 261 SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 261 sgs~D~~i~~~~~~~~~ 277 (304)
++..|+.|-+||+....
T Consensus 459 ~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDD 475 (555)
T ss_pred EEcCCCceehhhhhccc
Confidence 99999999999986644
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-13 Score=119.81 Aligned_cols=208 Identities=15% Similarity=0.064 Sum_probs=137.4
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC-CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D-~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
..|.++|.. +...+.+..|...+.+.+|+|||+.|+..+.. +.-.+++||+.+++......... .+....|+|||
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g---~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG---MTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC---cccCcEECCCC
Confidence 478888874 44455566788899999999999988876642 22336899998765432211111 23467899999
Q ss_pred CEEE-EEeCCCe--EEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCcee
Q psy4754 127 RLLF-AGYNDYT--INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 127 ~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
+.++ +.+.++. |.+||+.++. ...+..+........|+|||+.++..+. ++...++++|+.+++........
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~--- 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG--- 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC---
Confidence 9875 4555554 7777877654 3445566666777899999998887663 44445678887765443322211
Q ss_pred eeeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 203 FGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
.......|+|+|++|+....+ ..|.+||...+. ...+. ....+....|+|||+.|+..+.+
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 123557899999999886543 357888875443 23332 23356788999999998866543
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=128.44 Aligned_cols=243 Identities=22% Similarity=0.278 Sum_probs=171.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc---CcEEEEEECC--CCCeEEEEeCCCceEEEEeeeCCC--
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE---NRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRAD-- 102 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~---~~V~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~~~-- 102 (304)
..+-|+|=...++++.....|++||-++++.+..|..+. ..|+.+.+-. |..+|++|+.||.| |+|+--..
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvI--RIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVI--RIWKDYADKW 1145 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceE--EEeccccccc
Confidence 567888888889999888899999999998887775543 5788888865 44589999999996 67875321
Q ss_pred e--eEeE-Eec-cceee---c-eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc-CcccceeEEEEc-CCCcEEE
Q psy4754 103 K--EVAC-YKK-DSILF---G-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVS-PDGTAFS 172 (304)
Q Consensus 103 ~--~~~~-~~~-~~~~~---~-~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s-p~~~~la 172 (304)
+ .+.. +.. .+... + -.-++|.....+|++++.-..|+|||..++.....+. +-...|+++.-+ +.|+.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 1 1111 110 00000 0 1234566666778887778999999998877665543 444556776543 3468999
Q ss_pred EeecCCceEEEEeeecCCc---eEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCceee--EEeeccc--
Q psy4754 173 SGSWDTTLRCRLFDLRADK---EVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRV--NHLMGHE-- 244 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~~~~~--~~~~~h~-- 244 (304)
.|-.||++ ++||.|... .+..++.+.-..++..+.+-+.|- .|++|+.+|.|++||+...... .++..|-
T Consensus 1226 AGfaDGsv--RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1226 AGFADGSV--RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EeecCCce--EEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 99999996 799987643 355666665444577788887654 4999999999999998763221 2233343
Q ss_pred c-ceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 245 N-RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 245 ~-~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+ ..+++..+++...+|||+. ..|++|++..++
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 3 5899999999999999998 999999875443
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-14 Score=113.49 Aligned_cols=212 Identities=17% Similarity=0.242 Sum_probs=145.8
Q ss_pred CceeEEeeccc--cceE----eeeecccccc-ceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCcee---eeeecCCcCcE
Q psy4754 3 KNHCRLFDLRA--DKEV----ACYKKDSILF-GATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCR---VNHLMGHENRV 71 (304)
Q Consensus 3 ~~~v~~wd~~~--~~~~----~~~~~~~~~~-~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~---~~~~~~h~~~V 71 (304)
++-.|+|.+.. ++.. ..-.+..+.. .+++.+|.. +-+++.+.|-|-+..|||++++.. ...+.+|+.+|
T Consensus 120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 45589999884 2221 1111122222 378999975 456888999999999999998733 44578999999
Q ss_pred EEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeE-EeccceeeceeeeEEcCC-CCEEEE-EeCCCeEEEecCCcc-
Q psy4754 72 SCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVS-GRLLFA-GYNDYTINVWDSLKC- 146 (304)
Q Consensus 72 ~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~s~~-~~~l~s-g~~dg~i~iwd~~~~- 146 (304)
..++|..++. .++|.|.||++ |++|++....... ++..........+++++. .+++|+ +.....|.+-|++..
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSv--RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSV--RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC 277 (364)
T ss_pred eEEEeccCccceEEEecCCCcE--EEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC
Confidence 9999998664 88999999995 7999986543222 232221222234555543 445665 445678999998864
Q ss_pred ccceeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCce------EEEeecCceeeeeeEEEEcCC-CCEEE
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKE------VACYKKDSILFGATSVDFSVS-GRLLF 218 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~s~~-g~~l~ 218 (304)
.++.++.+|++.|++++|.|.. .+++||+.|... .+||+.+.-. +..+... ..|+.+.|+|. +..++
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa--liWDl~q~~~~~~~dPilay~a~---~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA--LIWDLQQMPRENGEDPILAYTAG---GEVNQIQWSSSQPDWIA 352 (364)
T ss_pred cceehhhcCcccccceEecCCCCceeeecCCcceE--EEEecccccccCCCCchhhhhcc---ceeeeeeecccCCCEEE
Confidence 4678899999999999999965 689999999885 5899865321 2223322 35788888854 56676
Q ss_pred EEe
Q psy4754 219 AGY 221 (304)
Q Consensus 219 sg~ 221 (304)
.+.
T Consensus 353 i~~ 355 (364)
T KOG0290|consen 353 ICF 355 (364)
T ss_pred EEe
Confidence 665
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-13 Score=126.76 Aligned_cols=248 Identities=16% Similarity=0.189 Sum_probs=158.3
Q ss_pred cccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCce-------eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEE
Q psy4754 23 DSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCC-------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~-------~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~ 94 (304)
+.|...+..++.++. +.+++|||.||+||+|+..+-+ ..-++.--...+.++.+-+.++.++.++.||.++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~- 1123 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR- 1123 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE-
Confidence 333344667777655 5999999999999999975421 1112222356788899989999999999999974
Q ss_pred EEeeeCC--CeeEeEE---eccceeec--eeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceec--cCcccceeEEE
Q psy4754 95 RLFDLRA--DKEVACY---KKDSILFG--ATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVSCLQ 163 (304)
Q Consensus 95 ~~wd~~~--~~~~~~~---~~~~~~~~--~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~ 163 (304)
+.++.. ....... ..+....+ +...+|.. ....++.+..-+.|..||+++....-.+ .--.+.|++++
T Consensus 1124 -~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1124 -VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred -EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 555543 1111111 11111111 11112221 1236777888899999998875433222 22337899999
Q ss_pred EcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC---CCCEEEEEe--CCCcEEEEeCCCceeeE
Q psy4754 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGRLLFAGY--NDYTINVWDSLKCCRVN 238 (304)
Q Consensus 164 ~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~sg~--~d~~i~iwd~~~~~~~~ 238 (304)
.+|.++++++|+..|.+ .+||+|-...+..++.... .++..+..+| .....++++ ..+-|.+|++.++.+..
T Consensus 1203 idp~~~WlviGts~G~l--~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQL--VLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred ecCCceEEEEecCCceE--EEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999999999999885 5999998888777754432 3444454444 345555544 45679999998886655
Q ss_pred Eeecc-cc-------------------ceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 239 HLMGH-EN-------------------RVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 239 ~~~~h-~~-------------------~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
.+... .. .+.| .+..-+..+.+|+.|..||.||...+
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~-~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISC-GVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceee-ecccCCceeeecCCccceeeccCCCc
Confidence 54432 11 1122 22223467889999999999987553
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-15 Score=117.80 Aligned_cols=155 Identities=22% Similarity=0.238 Sum_probs=119.0
Q ss_pred eeEEEEcC-CCC--EEEEeeCCCcEEEEeCCCce----------eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEE
Q psy4754 29 ATSVDFSV-SGR--LLFAGYNDYTINVWDSLKCC----------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 95 (304)
Q Consensus 29 i~~~~~~~-~g~--~l~tg~~dg~v~iwd~~~~~----------~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~ 95 (304)
+.|..+.. +++ ++++|.++|.|.+||++++. .......|..+|.++.+.+....=++|+.+..+ .
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl--~ 230 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL--V 230 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc--e
Confidence 55665432 333 67799999999999999873 233345799999999999876677788877665 4
Q ss_pred EeeeCCCe--eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEE
Q psy4754 96 LFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 173 (304)
Q Consensus 96 ~wd~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 173 (304)
.|.+.... ........-...++..+.+.||++.+|+++.|+.|++|..++..++..+.-|.+.|++++|+||.+.+|.
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAA 310 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhh
Confidence 67765431 1110000001225678889999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceEEEEeee
Q psy4754 174 GSWDTTLRCRLFDL 187 (304)
Q Consensus 174 ~s~d~~i~i~~~d~ 187 (304)
+|.|.+| .+|++
T Consensus 311 askD~rI--SLWkL 322 (323)
T KOG0322|consen 311 ASKDARI--SLWKL 322 (323)
T ss_pred ccCCceE--Eeeec
Confidence 9999996 58875
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=115.02 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=168.1
Q ss_pred ceeEEEEc--CCC-CEEEEeeC----CCcEEEEeC--CCceeeee-ecCCcCcEEEEEECCCCC-----eEEEEeCCCce
Q psy4754 28 GATSVDFS--VSG-RLLFAGYN----DYTINVWDS--LKCCRVNH-LMGHENRVSCLQVSPDGT-----AFSSGSWDTTL 92 (304)
Q Consensus 28 ~i~~~~~~--~~g-~~l~tg~~----dg~v~iwd~--~~~~~~~~-~~~h~~~V~~l~~s~d~~-----~l~sgs~D~~i 92 (304)
.+.++.|+ ++. -.||.|+- ...|.|-.+ .+++.+.. -..|.-+++.+.|.|+.+ +|+|++ |.
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D~-- 122 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-DF-- 122 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-Ce--
Confidence 36788887 333 36777754 244555443 33443321 135888999999999874 566654 43
Q ss_pred EEEEeeeCCCeeEeEEe------ccc-eeeceeeeEEc-CCCCEEEEEeCCCeEEEecCCcccc---ceeccCcccceeE
Q psy4754 93 RCRLFDLRADKEVACYK------KDS-ILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLKCCR---VNHLMGHENRVSC 161 (304)
Q Consensus 93 ~~~~wd~~~~~~~~~~~------~~~-~~~~~~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~ 161 (304)
+|+|.+..+......+ ++. .-.+.++..|. .+.+++.+.+-|-+..|||++++.. -.++..|..+|..
T Consensus 123 -LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 123 -LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred -EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 4899987432211111 110 01134555555 3566888888899999999988643 3457899999999
Q ss_pred EEEcCCC-cEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCC-CEEEEE-eCCCcEEEEeCCC-cee
Q psy4754 162 LQVSPDG-TAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSG-RLLFAG-YNDYTINVWDSLK-CCR 236 (304)
Q Consensus 162 v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g-~~l~sg-~~d~~i~iwd~~~-~~~ 236 (304)
++|...+ +.||++|.||++ |+||+|..+- ...+.......+...+++++.. ++||+- .....|.|-|++- +.+
T Consensus 202 Iaf~~~s~~~FASvgaDGSv--RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSV--RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred EEeccCccceEEEecCCCcE--EEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 9999865 589999999995 7999997654 2333333322345678888665 567774 3446688999864 456
Q ss_pred eEEeeccccceEEEEEccC-CCEEEEeecCCeeeeccccccch
Q psy4754 237 VNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~-g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+.++.+|.+.|+.++|.|. +.+|.|++.|...-+||+....+
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 8889999999999999996 47899999999999999866553
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-13 Score=127.87 Aligned_cols=268 Identities=12% Similarity=0.054 Sum_probs=169.8
Q ss_pred CCceeEEeeccccc---eEeeeecc--ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc-------eeeeeecCCc-
Q psy4754 2 GKNHCRLFDLRADK---EVACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-------CRVNHLMGHE- 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~---~~~~~~~~--~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~-------~~~~~~~~h~- 68 (304)
-|++||+||+..-. ........ .....+.++.+.+.+..+|.|+.||.|++.++.-. +..+....+.
T Consensus 1069 ~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~ 1148 (1431)
T KOG1240|consen 1069 DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD 1148 (1431)
T ss_pred CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC
Confidence 48999999987632 11111111 13344889999999999999999999999998641 1122222232
Q ss_pred CcEE-EEEECCC-CC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 69 NRVS-CLQVSPD-GT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 69 ~~V~-~l~~s~d-~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
+.|. ..++... +. .|+-+..-+. +..||++.....+..+.+.....+++++.+|.++++++|+..|.+.+||++-
T Consensus 1149 g~vv~m~a~~~~~~S~~lvy~T~~~~--iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1149 GVVVSMHAFTAIVQSHVLVYATDLSR--IVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CceEEeecccccccceeEEEEEeccc--eEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 3333 3344332 23 3444433333 4689998766665555443334578999999999999999999999999987
Q ss_pred cccceec-cCcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCceEEEeecC-cee----------------ee
Q psy4754 146 CCRVNHL-MGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-SIL----------------FG 204 (304)
Q Consensus 146 ~~~~~~~-~~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-~~~----------------~~ 204 (304)
+.++... ..+..+++.|..+|- ....++++..+.--+-+|++.++.+..++... ... ..
T Consensus 1227 ~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~ 1306 (1431)
T KOG1240|consen 1227 RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLA 1306 (1431)
T ss_pred CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccc
Confidence 6666543 234467777776653 33455444422222468999887665555432 100 01
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee-----------------------------------------------
Q psy4754 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV----------------------------------------------- 237 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~----------------------------------------------- 237 (304)
.....+...+.++.+|+.|..|+.||....+..
T Consensus 1307 ~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~ 1386 (1431)
T KOG1240|consen 1307 GISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRE 1386 (1431)
T ss_pred ceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhccc
Confidence 123344455778899999999999995432211
Q ss_pred -E--------EeeccccceEEEEEccC-CCEEEEeecCCeeeec
Q psy4754 238 -N--------HLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRDE 271 (304)
Q Consensus 238 -~--------~~~~h~~~i~~l~~sp~-g~~lasgs~D~~i~~~ 271 (304)
. .-..|..+|+++++-.. ..+|++++.||.|++|
T Consensus 1387 ~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1387 NQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred ccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 0 00047778888887653 4588899999999999
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-15 Score=125.91 Aligned_cols=234 Identities=15% Similarity=0.171 Sum_probs=185.0
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
....++-+.+.++.+|..|+.|+.-|.+-.+|..++.....+. -...|..+.|-.+.++++.+-... +.+||- .+
T Consensus 126 ~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y---~yvYD~-~G 200 (545)
T KOG1272|consen 126 SLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKY---VYVYDN-NG 200 (545)
T ss_pred cccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhce---EEEecC-CC
Confidence 3445666789999999999999999999999998876554432 246788899988888888775443 367884 47
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
.+++|++.+. .+..+.|-|-.=+|++++..|.++.-|+.+++.+..+..-.+.+..|.-+|-...+-+|...|+|
T Consensus 201 tElHClk~~~---~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtV-- 275 (545)
T KOG1272|consen 201 TELHCLKRHI---RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTV-- 275 (545)
T ss_pred cEEeehhhcC---chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceE--
Confidence 8899988754 35678898877778888999999999999999888887777888899999988889999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
.+|.....+++..+..+. .+|.++++.++|.|++|.+-|..++|||+..-..+.++.. .-+...++||.-| ++..
T Consensus 276 SlWSP~skePLvKiLcH~--g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHR--GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred EecCCCCcchHHHHHhcC--CCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 589887766654443333 4689999999999999999999999999988777776654 3466778887543 5556
Q ss_pred ecCCeeeec
Q psy4754 263 SWDTTLRDE 271 (304)
Q Consensus 263 s~D~~i~~~ 271 (304)
|....+.+|
T Consensus 351 ~~G~~v~iw 359 (545)
T KOG1272|consen 351 SYGDHVQIW 359 (545)
T ss_pred ecCCeeeee
Confidence 677788888
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=123.47 Aligned_cols=208 Identities=21% Similarity=0.333 Sum_probs=143.6
Q ss_pred ccccc--eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee-cCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEee
Q psy4754 24 SILFG--ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 24 ~~~~~--i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd 98 (304)
..+|. |.|++|+.+|.+|++||.|-.+.|||+...+.++.+ .+|.+.|.+++|-|. .+.++||+.|+.| +++|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i--~lfd 123 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI--KLFD 123 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE--EEEe
Confidence 33444 999999999999999999999999999887777766 489999999999994 4588999999985 6899
Q ss_pred eCCCee----------EeEEeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCccc--cc--------eeccCccc
Q psy4754 99 LRADKE----------VACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCC--RV--------NHLMGHEN 157 (304)
Q Consensus 99 ~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~--~~--------~~~~~h~~ 157 (304)
+...+. .+++.-+ ...+..++.-|++ ..+.+++.||+++=+|++... .. ..+...--
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~ch--t~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCH--TDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred cccccccccccCccchhhhhhhh--hhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 874322 2222211 1123455666776 678889999999999987621 11 11112223
Q ss_pred ceeEEEEcCCC-cEEEEeecCCceEEEEeeecCC--------c----------eEEEeecCce----------eeeeeEE
Q psy4754 158 RVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRAD--------K----------EVACYKKDSI----------LFGATSV 208 (304)
Q Consensus 158 ~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~--------~----------~~~~~~~~~~----------~~~~~~~ 208 (304)
...++.++|.. .+||.|+.|--. ++||.+.. . ++.-+..... ..-++-+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfa--rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFA--RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchh--hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 46788999965 578888888764 78984321 0 1222211111 0125678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 209 DFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 209 ~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
+|+|+|.-|+.......|+++|+..++..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 89999987777666779999998765543
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-12 Score=105.07 Aligned_cols=236 Identities=11% Similarity=0.117 Sum_probs=153.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEE-EeCC----CceEEEEeeeCCCe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS-GSWD----TTLRCRLFDLRADK 103 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s-gs~D----~~i~~~~wd~~~~~ 103 (304)
..+++|.-|..-++.|..+ -.|||+.+......+..-+.+.+.-+.+--..++|+- ||.. ...++.+||-...+
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 3458999888888777655 4999998764332222222233222233334555553 3322 13456799966666
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-cccceec--cCcccceeEEEEcCCCcEEEEee-cCCc
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHL--MGHENRVSCLQVSPDGTAFSSGS-WDTT 179 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~--~~h~~~v~~v~~sp~~~~las~s-~d~~ 179 (304)
++.++.... .+..+.++++ .++... .+.|.+|.... .+.+..+ ...+..+.+++-+-+...+|.-| .-|.
T Consensus 87 ~i~el~f~~---~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 87 CIIELSFNS---EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred EEEEEEecc---ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 666655443 3567777654 455443 67899998653 2333222 12233354544444445566444 3455
Q ss_pred eEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCceeeEEeec--cccceEEEEEcc
Q psy4754 180 LRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-INVWDSLKCCRVNHLMG--HENRVSCLQVSP 254 (304)
Q Consensus 180 i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~-i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp 254 (304)
+.+.|+...+. -..+++|. ..+.+++.+-+|.++|+++..|+ |||||..+++++.++.. -.+.|.|++|||
T Consensus 161 --vQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 161 --VQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred --EEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 46788776544 23445554 35688999999999999999998 99999999999998875 346899999999
Q ss_pred CCCEEEEeecCCeeeeccccc
Q psy4754 255 DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~~~~~ 275 (304)
|+.+||.+|.-+|+-++.+..
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999998886644
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-14 Score=116.51 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=118.8
Q ss_pred CEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCce-ee
Q psy4754 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-LF 203 (304)
Q Consensus 127 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-~~ 203 (304)
..+|++...|.|++||..+++.+..+.+|+..++.+.|.. ....+.+|+.||+| ++||+|.......+..... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~V--r~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTV--RLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeE--EEEEeecchhhhheeccCCCCC
Confidence 4678888899999999999999999999999999999976 45679999999996 6999998765544432222 23
Q ss_pred eeeEEEEcCCCCEEEEEeC----CCcEEEEeCCCcee-eEEe-eccccceEEEEEcc-CCCEEEEeecCCeeeecccccc
Q psy4754 204 GATSVDFSVSGRLLFAGYN----DYTINVWDSLKCCR-VNHL-MGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~----d~~i~iwd~~~~~~-~~~~-~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+..+++....++.+++|.. +-.+.+||.+..+. +..+ ..|...|++|.|+| +...|+|||-||.|-++|...+
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 4567777778889998864 45688999987666 5554 34999999999999 5689999999999999987654
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-12 Score=104.16 Aligned_cols=255 Identities=18% Similarity=0.151 Sum_probs=167.4
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
|..|.+|++..-+=-.+++ ....++.++.|+|||+ +|.+..-|-.|.+|++.+..... +.-.+..+..++|+|||+
T Consensus 70 ~~~vqvwsl~Qpew~ckId--eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKID--EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred cceEEEEEeecceeEEEec--cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence 3479999999865433333 3345689999999995 66788889999999998765432 333355678899999999
Q ss_pred eEEEEeC-----------------------------------CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 82 AFSSGSW-----------------------------------DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 82 ~l~sgs~-----------------------------------D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
+.+-++. |+.. +.+||..-+-.+-.++- ..++..++++|.+
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~-laVwd~~Leykv~aYe~---~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW-LAVWDNVLEYKVYAYER---GLGLKFVEWSPCN 222 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE-EEEecchhhheeeeeee---ccceeEEEecccc
Confidence 8765541 2221 12344322111111111 1246678999999
Q ss_pred CEEEEEeCCCeEEEecCCccccce------------------------------------eccCcc--------------
Q psy4754 127 RLLFAGYNDYTINVWDSLKCCRVN------------------------------------HLMGHE-------------- 156 (304)
Q Consensus 127 ~~l~sg~~dg~i~iwd~~~~~~~~------------------------------------~~~~h~-------------- 156 (304)
++++.|+.|+++++-+-.+.+.+. .+..|.
T Consensus 223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP 302 (447)
T ss_pred ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence 999999999999985422111100 000111
Q ss_pred ----------------cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 157 ----------------NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 157 ----------------~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
-.+.-++|++|.+++||-...---.+++||++..+....+.-. .++....|.|....|+..
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk---~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK---HPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc---cceeEEEeCCCCceEEEE
Confidence 1233578999998888765432223689999886654433221 356888999999998888
Q ss_pred eCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
.....+++|...-...+. ..+..-.|..+.|.-+|..++-.+.|..-
T Consensus 380 tg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 380 TGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred cCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 777789999865543332 33344689999999999999999998753
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-14 Score=122.53 Aligned_cols=214 Identities=25% Similarity=0.314 Sum_probs=152.5
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEE
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINV 140 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~i 140 (304)
.+.||.+-|.||.|+.||.+|+|||.|-.+ .+||....+.++.+.. .+...|.++.|-| ++..+++|..|..|++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~--ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRL--IVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceE--Eeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 467999999999999999999999999764 6899987777766543 2334467888876 4668899999999999
Q ss_pred ecCCc----------cccceeccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEE----------EeecC
Q psy4754 141 WDSLK----------CCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVA----------CYKKD 199 (304)
Q Consensus 141 wd~~~----------~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~----------~~~~~ 199 (304)
+|+.. .....-+..|...|..++..|++ ..|.+++.||++ +-+|+++..... .+...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti--rQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI--RQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce--eeecccCCccCCccccccHHHHHhchh
Confidence 99863 12233456799999999999998 789999999996 789998743210 11111
Q ss_pred ceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC--------c----------eeeEEe-eccc-----------cceE
Q psy4754 200 SILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK--------C----------CRVNHL-MGHE-----------NRVS 248 (304)
Q Consensus 200 ~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~--------~----------~~~~~~-~~h~-----------~~i~ 248 (304)
.....++.++|... +|+.|++|--+++||... + .++.-+ .+|. .-++
T Consensus 200 --lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 --LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred --hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 13456888999865 677899999999998221 0 012222 1232 1256
Q ss_pred EEEEccCCCEEEEeecCCeeeeccccc--cchhheee
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEESKN--RYMQYLLR 283 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~~~~--~~~~~~~~ 283 (304)
-+.|+|+|..|...-..-.|.+++... .+++|++.
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 789999998877655555788886654 45555554
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=121.18 Aligned_cols=265 Identities=20% Similarity=0.258 Sum_probs=182.6
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCC--CCEEEEeeCCCcEEEEeCCC-c--eeeeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLK-C--CRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~-~--~~~~~~~~h~~~V~~l~~s 77 (304)
|..|-+||+.+.+....+. ..|...|-...|-|. -..+++++.||.|++=.+.. + +..+.+..|.++|..++.-
T Consensus 163 D~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~ 241 (559)
T KOG1334|consen 163 DLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVE 241 (559)
T ss_pred cceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeec
Confidence 4568999999997765544 233344666678774 35789999999999987543 2 2244566799999999999
Q ss_pred CCC-CeEEEEeCCCceEEEEeeeCCCeeEe---EEeccce-eeceeeeEEcCCCC-EEEEEeCCCeEEEecCCcccc---
Q psy4754 78 PDG-TAFSSGSWDTTLRCRLFDLRADKEVA---CYKKDSI-LFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCR--- 148 (304)
Q Consensus 78 ~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~---~~~~~~~-~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~--- 148 (304)
|+. +-|.|++.|+.+ .-.|++...+.. +.+.+.. ......++..|-+. ++++|+.|..+++||.+....
T Consensus 242 p~sp~~f~S~geD~~v--~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~ 319 (559)
T KOG1334|consen 242 PDSPKPFLSCGEDAVV--FHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN 319 (559)
T ss_pred CCCCCcccccccccce--eeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc
Confidence 965 578999999985 467876544322 2222111 12334667777655 788899999999999764221
Q ss_pred ---ceecc------CcccceeEEEEcCCC-cEEEEeecCCceEEEEeee--cCC----------ceE-EEeecCceeeee
Q psy4754 149 ---VNHLM------GHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDL--RAD----------KEV-ACYKKDSILFGA 205 (304)
Q Consensus 149 ---~~~~~------~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~--~~~----------~~~-~~~~~~~~~~~~ 205 (304)
+.++- ...-.|++++|+.++ +++++-+ |-.| +++.- ..+ ..+ .+|+++...--|
T Consensus 320 n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~I--YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 320 NGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDI--YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred cchhhhcCCccccccCcccceeEEecCCccceeeeec-ccce--EEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 12211 223458999999554 5666655 4443 46632 112 111 225554432234
Q ss_pred eEEE-EcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 206 TSVD-FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 206 ~~~~-~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..+. |.|..+|+++|+.=|.|.||+-.+++.+.-+.+-..-|+||.-+|--..|||++-|..||+|.+
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 4555 4799999999998899999999988888777775559999999999999999999999999987
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-10 Score=99.84 Aligned_cols=266 Identities=16% Similarity=0.159 Sum_probs=161.7
Q ss_pred ceeEEeec--cccceEeeeeccccccceeEEEEcCCCCEEEEeeC----CCcEEEEeCCC--ce--eeeeecCCcCcEEE
Q psy4754 4 NHCRLFDL--RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----DYTINVWDSLK--CC--RVNHLMGHENRVSC 73 (304)
Q Consensus 4 ~~v~~wd~--~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----dg~v~iwd~~~--~~--~~~~~~~h~~~V~~ 73 (304)
+.|.+|++ .+++... ..........+.++++|++++|++... +|.|..|++.. ++ .+.........-..
T Consensus 13 ~gI~~~~~d~~~g~l~~-~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTL-VQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEE-EEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceE-eeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 56788877 4443322 221222333678999999999888766 57999999765 32 33333322334457
Q ss_pred EEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeE----Eec--------cceeeceeeeEEcCCCCEEEEEeC-CCeEE
Q psy4754 74 LQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVAC----YKK--------DSILFGATSVDFSVSGRLLFAGYN-DYTIN 139 (304)
Q Consensus 74 l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~----~~~--------~~~~~~~~~~~~s~~~~~l~sg~~-dg~i~ 139 (304)
++++|++++|+.+.. ++++ .++++.....+.. ... .....+.+++.++|+++++++... ...|.
T Consensus 92 i~~~~~g~~l~vany~~g~v--~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSV--SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEECTTSSEEEEEETTTTEE--EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEecCCCEEEEEEccCCeE--EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 899999999988875 6664 6788876322221 110 011123568999999998887643 56899
Q ss_pred EecCCcccc-c---eec-cCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeec--CCc--eEEEeecC--c--eeeee
Q psy4754 140 VWDSLKCCR-V---NHL-MGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLR--ADK--EVACYKKD--S--ILFGA 205 (304)
Q Consensus 140 iwd~~~~~~-~---~~~-~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~--~~~--~~~~~~~~--~--~~~~~ 205 (304)
+|++..... + ..+ .........+.|+|+++++.... .+++| .++++. .++ .+...... . .....
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v--~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV--SVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEE--EEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcE--EEEeecccCCceeEEEEeeeccccccccCCc
Confidence 998765431 2 111 12334578899999998876555 45665 456665 332 22222211 0 01135
Q ss_pred eEEEEcCCCCEEEEEe-CCCcEEEEeCC--Cc--eeeEEeeccccceEEEEEccCCCEEEEee-cCCeeeecccc
Q psy4754 206 TSVDFSVSGRLLFAGY-NDYTINVWDSL--KC--CRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRDEESK 274 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~-~d~~i~iwd~~--~~--~~~~~~~~h~~~i~~l~~sp~g~~lasgs-~D~~i~~~~~~ 274 (304)
..+.++|||++|.++. ...+|.+|++. ++ +.+..+.........++++|+|++|+.+. .++.|.+++.+
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 7889999999977765 45679999983 22 23333433344578999999999988776 56789988664
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=124.59 Aligned_cols=195 Identities=17% Similarity=0.192 Sum_probs=154.7
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
-..+.++.+|++|+.|+.-|.+ -.+|..+.+....+.... .+..+.|-.+.+++| ......+.|||- .+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHl--Aa~Dw~t~~L~~Ei~v~E---tv~Dv~~LHneq~~A-VAQK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHL--AAFDWVTKKLHFEINVME---TVRDVTFLHNEQFFA-VAQKKYVYVYDN-NGTELH 204 (545)
T ss_pred CeeeeecCCccEEEecCCccce--eeeecccceeeeeeehhh---hhhhhhhhcchHHHH-hhhhceEEEecC-CCcEEe
Confidence 3568999999999999988885 577877777665544322 345677776666555 456788999994 445454
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
-+..| ..|..+.|-|-.-+|++++..+.+ +--|+..++.+..+..... ....+.-+|-...+-.|...|+|.+|.
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L--~Y~DVS~GklVa~~~t~~G--~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFL--KYQDVSTGKLVASIRTGAG--RTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCce--EEEeechhhhhHHHHccCC--ccchhhcCCccceEEEcCCCceEEecC
Confidence 44444 678999999998889999988875 4568888887766655442 335567789999999999999999999
Q ss_pred CCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 231 SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 231 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
....+++..+.-|.++|.+|++.++|+++||.+.|+.+++||++.-+
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 98888888888999999999999999999999999999999998766
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-12 Score=114.63 Aligned_cols=209 Identities=17% Similarity=0.096 Sum_probs=134.4
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
..|.++|..+.+...... ....+...+|+|||+.|+.++.+ ..|++||+.+++... +..+...+.+++|+|||
T Consensus 170 ~~l~~~d~~g~~~~~l~~---~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDGANPQTITR---SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCCCCCEEeec---CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence 457777776544322211 12237788999999988876544 489999998875432 33455667789999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-C--eEEEecCCccccceeccCcc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-Y--TINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~h~ 156 (304)
+.|+ +.+.++...+++||+.++.......... ......|+|+++.++..+.. + .|.++|+.+.. ...+..+.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~ 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPG---IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRG 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCC---CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCC
Confidence 8665 5555665557889987654432211111 12356789999988776543 3 57777876543 23344445
Q ss_pred cceeEEEEcCCCcEEEEeecCC-ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 224 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~-~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~ 224 (304)
..+....|+|+++.++.++.++ ...+.++|+.+.... .+.... ......|+|+|++|+..+.++
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 5677889999999988877664 344678888775432 222211 123457999999988876654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=114.17 Aligned_cols=219 Identities=18% Similarity=0.203 Sum_probs=143.5
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEE-eCCCceEEEEeeeCCCeeEeEEec
Q psy4754 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDTTLRCRLFDLRADKEVACYKK 110 (304)
Q Consensus 32 ~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sg-s~D~~i~~~~wd~~~~~~~~~~~~ 110 (304)
+.|+|+|+++|+++.- .+.|-|.++.+..+.+.. -+.|.-+.|..|+.+++.+ ..|+. +.+|++.+..-...+..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~--vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPK--VQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccce--EEEEEeecceeEEEecc
Confidence 7899999999999766 888999888765543332 4678889999998876655 45656 47899976544333333
Q ss_pred cceeeceeeeEEcCCCCEEEE-EeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecC
Q psy4754 111 DSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 189 (304)
Q Consensus 111 ~~~~~~~~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~ 189 (304)
. ..+..++.+||||+.++. ..-+-.|.+|.+.+.... .+.-.+..+..++|+|||++.+.++.-... -.+.+-.
T Consensus 90 g--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk--dyv~i~~ 164 (447)
T KOG4497|consen 90 G--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCK--DYVQISS 164 (447)
T ss_pred C--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHH--HHHHHHh
Confidence 2 345678899999976655 555899999998765432 122223456889999999998887643221 0111111
Q ss_pred C---ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 190 D---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 190 ~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
. ..+..+.... ...+.+.|+|||+.||. ||..-.-.+-.+ .-.-.+..++|+|.++.|+.||.|+
T Consensus 165 c~~W~ll~~f~~dT--~DltgieWsPdg~~laV---------wd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 165 CKAWILLKEFKLDT--IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred hHHHHHHHhcCCCc--ccccCceECCCCcEEEE---------ecchhhheeeee-eeccceeEEEeccccceEEeeccch
Confidence 1 1122223332 23478899999988775 432111111111 1124678899999999999999999
Q ss_pred eeeec
Q psy4754 267 TLRDE 271 (304)
Q Consensus 267 ~i~~~ 271 (304)
++|+-
T Consensus 233 ~lrvl 237 (447)
T KOG4497|consen 233 MLRVL 237 (447)
T ss_pred hhhhh
Confidence 99854
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=108.55 Aligned_cols=162 Identities=17% Similarity=0.089 Sum_probs=119.9
Q ss_pred eeEEcCCCCEEEEEeCCCeEEEecCCc---------c-ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 119 SVDFSVSGRLLFAGYNDYTINVWDSLK---------C-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 119 ~~~~s~~~~~l~sg~~dg~i~iwd~~~---------~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
.-+++|.+++|++|+.+|.|.+..+.+ + .++..+.+|.++|..++|.. .++.+|+ |+.|+-+.|+-.
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeehhh
Confidence 446789999999999999999997642 1 12344579999999999983 3777776 588766666432
Q ss_pred CCce--EEEe------ecC-ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEE
Q psy4754 189 ADKE--VACY------KKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 259 (304)
Q Consensus 189 ~~~~--~~~~------~~~-~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 259 (304)
.... ...+ +.+ .....++++-..|..+-++.++.|+.++-||+++++...+++||...|.+++--.....+
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence 2110 0001 111 112346888889888777777789999999999999999999999999999995556678
Q ss_pred EEeecCCeeeeccccccchhheee
Q psy4754 260 SSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
.||++|+++|+||.+.+..-.+.+
T Consensus 172 lsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred eecCCCccEEEEeccccceeEEec
Confidence 899999999999987766444443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=111.30 Aligned_cols=210 Identities=17% Similarity=0.073 Sum_probs=136.5
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
..|.++|... ...+.+..+...+...+|+|||++|+..+.++ .-.+++||+.+++......... ......|+|++
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~---~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG---MNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC---CccceEECCCC
Confidence 3577888753 33445556677889999999999988766432 3346889998765433222211 23457899999
Q ss_pred CEEEE-EeCCC--eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCcee
Q psy4754 127 RLLFA-GYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 127 ~~l~s-g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
+.++. .+.++ .|.+||+.+.. ...+..+........|+||++.++..+. ++...++++|+.+++........
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~--- 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG--- 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---
Confidence 87764 44443 58888887653 2334445445556789999998876654 44445677888766543222111
Q ss_pred eeeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDY---TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~---~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.......|+|+|++++....++ .|.+||+.++.. ..+... ......+|+|||+.|+..+.++.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCC
Confidence 1235678999999999887765 788899876533 223322 23455689999999988877653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=122.26 Aligned_cols=254 Identities=14% Similarity=0.121 Sum_probs=175.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEc-------CCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEEC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFS-------VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~-------~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 77 (304)
-|.+||...+..+..++. ...+.++ ..+.+++++..-+.+..=+.. .+.+ ..-.++|....+.
T Consensus 27 ~i~~yd~~s~~li~~~~~------~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~-~~~~---~~~s~wi~g~~l~ 96 (967)
T KOG0974|consen 27 EILVYDLSSGCLIRHLIQ------SKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEAS-NQII---ERFSDWIFGAKLF 96 (967)
T ss_pred ceEEeeCCchhHhhhhhh------hcccccccccccceeccceEEEEEeecceeecchh-hhhh---hhccccccccchh
Confidence 377888887754332221 1122222 123455555554444332221 1112 2234667766676
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc--ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
.+.+.++.+..+..+ .+||............. ...+....+.++++.-++++|+.-+.|.+|+.........+.+|
T Consensus 97 ~e~k~i~l~~~~ns~--~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 97 EENKKIALVTSRNSL--LIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred hhcceEEEEEcCceE--EEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence 777778877777774 67887765544333221 12333445567888889999999999999997633222247899
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE-EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA-CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
.+.|.++.++-||.+++++|.|.++ |+|++++.+... +.-.+ ...+..+.|+|. .+++++.|-+.++|+. .+
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsi--RlW~i~s~~~~~~~~fgH--saRvw~~~~~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSI--RLWPIDSREVLGCTGFGH--SARVWACCFLPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcce--eeeecccccccCcccccc--cceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence 9999999999999999999999996 799998877654 11122 245788999999 9999999999999964 45
Q ss_pred eeeEEeeccc-cceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 235 CRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 235 ~~~~~~~~h~-~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
..+..+.+|. ..|+.++..++...++|++.|+.+|+|++....
T Consensus 248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 5666888886 469999999999999999999999999875544
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=110.97 Aligned_cols=237 Identities=16% Similarity=0.028 Sum_probs=143.1
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
++.++|..+++...... ....+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+
T Consensus 180 ~l~~~d~~g~~~~~l~~---~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQ---SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCceEEec---CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC
Confidence 46677777654432221 12237889999999988765443 368889998775432 322334455789999999
Q ss_pred eEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CC--eEEEecCCccccceeccCccc
Q psy4754 82 AFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DY--TINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 82 ~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~~ 157 (304)
.|+ +.+.++.-.++++|+.++.... +..... ......|+||++.++..+. ++ .|.++|+.+++.. .+.....
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-cccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence 776 5555665556788988765432 222111 1245679999998776654 33 5777777655422 2211112
Q ss_pred ceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-C--cEEEEeCCC
Q psy4754 158 RVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-Y--TINVWDSLK 233 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-~--~i~iwd~~~ 233 (304)
......|+||++.++..+. ++...+.++|+.+++...... .. ......|+|+|++++..+.+ + .+.+++...
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3345689999999887664 343346788988765432211 11 11245799999998876543 3 355666543
Q ss_pred ceeeEEeeccccceEEEEEcc
Q psy4754 234 CCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp 254 (304)
.....+..+.+.+...+|+|
T Consensus 408 -~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 408 -RVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CceEECcCCCCCcCCCccCC
Confidence 33334444556667777776
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=111.71 Aligned_cols=237 Identities=14% Similarity=0.054 Sum_probs=141.5
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
++.++|..+.+..... .....+.+..|+|||+.|+..+. ++ .|.+||+.+++... +....+.....+|+|||+
T Consensus 199 ~l~i~d~dG~~~~~l~---~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNEQMLL---RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCceEee---cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC
Confidence 4555566554332111 11223678999999998875543 33 58888987765422 221223344689999999
Q ss_pred eEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CC--eEEEecCCccccceeccCccc
Q psy4754 82 AFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DY--TINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 82 ~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~~ 157 (304)
.|+ +.+.++...++++|+.+++... +..+. .......|+||++.++..+. ++ .|.++|+.+++. ..+.....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~--~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHR--AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-CccCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCC
Confidence 775 5566777667888987665432 22211 11245789999998876553 33 466667665442 22221222
Q ss_pred ceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC-CCc--EEEEeCCC
Q psy4754 158 RVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYT--INVWDSLK 233 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~-d~~--i~iwd~~~ 233 (304)
.....+|+|||+.++..+. ++...+.++|+.+++... +..... .....|+|+|++|+.... ++. +.+++. +
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~---d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRL---DESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCC---CCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 3345689999998876655 344455677887765432 221111 123479999998877554 333 666675 4
Q ss_pred ceeeEEeeccccceEEEEEcc
Q psy4754 234 CCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp 254 (304)
+.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 445555666666777888887
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-12 Score=107.90 Aligned_cols=239 Identities=14% Similarity=0.169 Sum_probs=168.4
Q ss_pred ceeEEEEcCCCC--EEEEeeCCCcEEEEeCCCceeeee------ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 28 GATSVDFSVSGR--LLFAGYNDYTINVWDSLKCCRVNH------LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 28 ~i~~~~~~~~g~--~l~tg~~dg~v~iwd~~~~~~~~~------~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.++++.|..+++ .+...+.|-.+..++..+...... ...-..+|..++-. ...|++|-.+|.+ .+|..
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l--~~~~~ 132 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNL--QVRHD 132 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcE--EEEec
Confidence 478888987654 666776777888888776654433 23345677777665 2367777777775 67887
Q ss_pred CCCe----eEeEEeccceeeceeeeEEcCCCC-EEEEEeCC--CeEEEecCCccccceecc-------C--cccceeEEE
Q psy4754 100 RADK----EVACYKKDSILFGATSVDFSVSGR-LLFAGYND--YTINVWDSLKCCRVNHLM-------G--HENRVSCLQ 163 (304)
Q Consensus 100 ~~~~----~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~d--g~i~iwd~~~~~~~~~~~-------~--h~~~v~~v~ 163 (304)
..+. .+..+..... ...+.-++... .+++|+.. ..+++||+...+.+-+-. + -+-.++++.
T Consensus 133 k~~d~hss~l~~la~g~g---~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPG---LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred cCCccccccceeeecCCc---eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 6322 2222222111 22333334333 55568888 899999988764432211 1 122456778
Q ss_pred EcCC--CcEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE-
Q psy4754 164 VSPD--GTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH- 239 (304)
Q Consensus 164 ~sp~--~~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~- 239 (304)
|-|. ...||+++.-+.+ ++||.+..+. +..+.-. ..+++++...|+|+++.+|..-+.+..||...+..+..
T Consensus 210 Fl~g~~~~~fat~T~~hqv--R~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQV--RLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ecCCCCCceEEEEecceeE--EEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 8887 7899999988774 7999986543 4444322 24678899999999999999999999999999887766
Q ss_pred eeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 240 ~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+.+-.+.|.+|..+|.++++|+++.|+.+|++|.+...
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 78888999999999999999999999999999987743
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-11 Score=109.07 Aligned_cols=207 Identities=14% Similarity=0.063 Sum_probs=132.4
Q ss_pred cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC-CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC
Q psy4754 49 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 127 (304)
Q Consensus 49 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D-~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 127 (304)
.|.++|...+. .+.+..+...+...+|+|||+.|+..+.+ +.-.+++||+.+++......... ......|+||++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g---~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG---LNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC---CcCCeEECCCCC
Confidence 47777876443 44455677889999999999988776644 33346889998765433222111 123578999999
Q ss_pred EEEE-EeCCC--eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceee
Q psy4754 128 LLFA-GYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILF 203 (304)
Q Consensus 128 ~l~s-g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~ 203 (304)
.++. ...++ .|.+||+.++. ...+..+........|+||++.++..+. ++...++++|+.+++.........
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~--- 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN--- 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---
Confidence 8874 44454 58888987654 3345555555667889999998776553 445456677877665432211111
Q ss_pred eeeEEEEcCCCCEEEEEeCC-C--cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 204 GATSVDFSVSGRLLFAGYND-Y--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d-~--~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
......|+|+|++|+....+ + .|.+||+.+++. ..+. +........|+|||+.++-.+.+
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceECCCCCEEEEEEec
Confidence 12356799999998876643 3 477889877643 2232 22222356899999999877654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.6e-12 Score=100.62 Aligned_cols=148 Identities=19% Similarity=0.357 Sum_probs=100.7
Q ss_pred eEEEEcCCCCEEEEeeC----------CCcEEEEeCC-CceeeeeecC-CcCcEEEEEECCCCCeEEE--EeCCCceEEE
Q psy4754 30 TSVDFSVSGRLLFAGYN----------DYTINVWDSL-KCCRVNHLMG-HENRVSCLQVSPDGTAFSS--GSWDTTLRCR 95 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~----------dg~v~iwd~~-~~~~~~~~~~-h~~~V~~l~~s~d~~~l~s--gs~D~~i~~~ 95 (304)
..+.|+++|.+|+.-.. -|...+|-+. .......+.- ..++|.+++|+|+|+.++. |..+.. +.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~--v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK--VT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc--cE
Confidence 34788899986653322 1345555552 2233444432 3457999999999997654 445564 58
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la 172 (304)
+||++ .+.+..+... ..+.+.|+|+|++++.++. .|.+.+||..+.+.+.+.. |. .+..++|+|||++|+
T Consensus 87 lyd~~-~~~i~~~~~~----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFGTQ----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeecCC----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEE
Confidence 99997 4455444332 3467999999999999864 4679999999877776543 43 478999999999999
Q ss_pred Eeec------CCceEEEEeeec
Q psy4754 173 SGSW------DTTLRCRLFDLR 188 (304)
Q Consensus 173 s~s~------d~~i~i~~~d~~ 188 (304)
+++. |.. +++|+..
T Consensus 160 ta~t~~r~~~dng--~~Iw~~~ 179 (194)
T PF08662_consen 160 TATTSPRLRVDNG--FKIWSFQ 179 (194)
T ss_pred EEEeccceecccc--EEEEEec
Confidence 8875 344 3577764
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=102.67 Aligned_cols=227 Identities=16% Similarity=0.214 Sum_probs=148.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECCCC-CeEEEEeCCCceEEEEeeeCCC----
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRAD---- 102 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~---- 102 (304)
+..++|++--.-+|.+..|-.|++|+-+.- ....++. -...|+|++|.|.+ +.|+.|...+ +.+|.....
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~g---IciW~~s~tln~~ 176 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG---ICIWSDSRTLNAN 176 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecce---eEEEEcCcccccc
Confidence 467899875556788899999999998763 3323332 34679999999965 4666666554 368877421
Q ss_pred eeEe--------EEeccceeeceeeeEEcCCCCEEEEEeC-CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEE
Q psy4754 103 KEVA--------CYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 173 (304)
Q Consensus 103 ~~~~--------~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 173 (304)
..++ .++.. ....++++.+.+||..+++++. |..|.+||..+++.+.-...-.+.++-+.||||+..+..
T Consensus 177 r~~~~~s~~~~qvl~~p-gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDP-GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCC-CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1111 11111 1235789999999999999765 789999999887765544344467888999999999999
Q ss_pred eecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC----Cce-----------eeE
Q psy4754 174 GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL----KCC-----------RVN 238 (304)
Q Consensus 174 ~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~----~~~-----------~~~ 238 (304)
++.|... ++|+.........+.... ..+....|+|+|.+|+...... =++|.+. ... .+.
T Consensus 256 At~davf--rlw~e~q~wt~erw~lgs--grvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 256 ATCDAVF--RLWQENQSWTKERWILGS--GRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred eccccee--eeehhcccceecceeccC--CceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeec
Confidence 9999984 789554332222222222 1467788999999877765432 2334211 100 000
Q ss_pred Ee------ec---cccceEEEEEccCCCEEEEeecC
Q psy4754 239 HL------MG---HENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 239 ~~------~~---h~~~i~~l~~sp~g~~lasgs~D 265 (304)
.+ .+ --+++.+++|.|.|.+||.-=..
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 01 01 13578999999999999986443
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-12 Score=105.02 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=153.2
Q ss_pred CEEEEeeCCCcEEEEeCCCce----eeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccce
Q psy4754 39 RLLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 113 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~ 113 (304)
..|++|-.+|.+.+|....+. .+..+..+ .++..+.-.+... .+++||..+..-+.+||+.+.+++...+....
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence 467788999999999987432 22223333 4566666666544 55568887333357899998877765432110
Q ss_pred -------eeceeeeEEcCC--CCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 114 -------LFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 114 -------~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
..-++.+.|-+. ...|++++.-+.+++||.+.. .++.++.--+.+++++...|+++.+++|..-+.+ .
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l--~ 272 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL--A 272 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh--h
Confidence 112567888887 788999999999999998754 4566666567789999999999999999888875 5
Q ss_pred EeeecCCceEEE-eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 184 LFDLRADKEVAC-YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 184 ~~d~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
.||.+.++...+ ++.. ...+.++-.+|.++++++++-|+.++|+|..+.+.+.... -...+++|.+.++
T Consensus 273 ~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred eecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 899999887655 3322 2457889999999999999999999999999866654422 2356677877664
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=101.72 Aligned_cols=247 Identities=19% Similarity=0.297 Sum_probs=165.5
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-----eeeeecCCc------------CcEEEEEECCCCC--eEEEEeCC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-----RVNHLMGHE------------NRVSCLQVSPDGT--AFSSGSWD 89 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-----~~~~~~~h~------------~~V~~l~~s~d~~--~l~sgs~D 89 (304)
|+++.|...|.+||||..+|.|-++.-.... ....+..|. ..|..+.|.++++ .++....|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 7999999999999999999999999854321 223344454 3578899998775 56666789
Q ss_pred CceEEEEeeeCCCee------------------Ee--EEe--------------ccceeeceeeeEEcCCCCEEEEEeCC
Q psy4754 90 TTLRCRLFDLRADKE------------------VA--CYK--------------KDSILFGATSVDFSVSGRLLFAGYND 135 (304)
Q Consensus 90 ~~i~~~~wd~~~~~~------------------~~--~~~--------------~~~~~~~~~~~~~s~~~~~l~sg~~d 135 (304)
+++ ++|-+..... ++ ... .+.+.++++++.++.|.+.++++ .|
T Consensus 108 kti--KlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 108 KTI--KLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred cce--eeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 997 5677642111 00 000 12234568899999999888876 47
Q ss_pred CeEEEecCCccc-c--ceecc-----CcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEE----Eee--cC-
Q psy4754 136 YTINVWDSLKCC-R--VNHLM-----GHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVA----CYK--KD- 199 (304)
Q Consensus 136 g~i~iwd~~~~~-~--~~~~~-----~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~----~~~--~~- 199 (304)
=.|.+|++.-.. . +-.+. .-+.-|++-.|+|.. +.|+-.|.-|+| ++-|+|.....- .+. .+
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI--rLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI--RLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE--EEeechhhhhhcchhhhhccccCC
Confidence 889999875321 1 11111 222346777899964 566666667785 689988532111 010 00
Q ss_pred -------ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC-CCceeeEEeecccc------------c---eEEEEEccCC
Q psy4754 200 -------SILFGATSVDFSVSGRLLFAGYNDYTINVWDS-LKCCRVNHLMGHEN------------R---VSCLQVSPDG 256 (304)
Q Consensus 200 -------~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~-~~~~~~~~~~~h~~------------~---i~~l~~sp~g 256 (304)
.+...+..+-|++.|+||++-. --+|++||+ +...++.++.-|.. . =.-++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 0123467789999999999874 368999998 56667777766641 1 2557899999
Q ss_pred CEEEEeecCCeeeeccccccchhhe
Q psy4754 257 TAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 257 ~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
.+++|||.....|+++...+..+-.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred ceEecccccceEEEecCCCCcceee
Confidence 9999999999999998655544433
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-11 Score=107.12 Aligned_cols=262 Identities=14% Similarity=0.127 Sum_probs=171.3
Q ss_pred ceeEEeeccccceEeeeeccc----------------------cccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCcee
Q psy4754 4 NHCRLFDLRADKEVACYKKDS----------------------ILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCR 60 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~----------------------~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~ 60 (304)
+-|+||++..++-+|.|-... +....+.+..+|||+|+ |||-.-..|++||+..-.
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS- 85 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS- 85 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce-
Confidence 358999999887665554310 11124778999999975 788899999999987532
Q ss_pred eeeecCCc--CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 61 VNHLMGHE--NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 61 ~~~~~~h~--~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
-.|.-|- ..|.-.-.+.|-..++--..|++|.. -..-+..... +. .. ....+.++.-..-++.++....|
T Consensus 86 -LKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief---Hak~G~hy~~-RI--P~-~GRDm~y~~~scDly~~gsg~ev 157 (703)
T KOG2321|consen 86 -LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF---HAKYGRHYRT-RI--PK-FGRDMKYHKPSCDLYLVGSGSEV 157 (703)
T ss_pred -eeeeecccccceeEEEeccchhhheEeecCceeee---hhhcCeeeee-ec--Cc-CCccccccCCCccEEEeecCcce
Confidence 1233332 33444444444222222234555421 1111111100 00 00 12345555445556677777788
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc---------eeeeeeEEE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---------ILFGATSVD 209 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~ 209 (304)
+-.++..++-+..+....+.++++..++-..++++|+.|+.+ -.||.+.-+.+..+.... ....|+++.
T Consensus 158 YRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V--EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~ 235 (703)
T KOG2321|consen 158 YRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV--EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK 235 (703)
T ss_pred EEEEccccccccccccccccceeeeecCccceEEecccCceE--EEecchhhhhheeeecccccCCCccccccCcceEEE
Confidence 888999888787777777899999999999999999999986 589998766555443221 112389999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc--ccceEEEEEccCCCEEEEeecC-Ceeeeccccccc
Q psy4754 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH--ENRVSCLQVSPDGTAFSSGSWD-TTLRDEESKNRY 277 (304)
Q Consensus 210 ~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~lasgs~D-~~i~~~~~~~~~ 277 (304)
|+.+|=.+++|...|.+.|||+.+.+++. .+.| .-+|..+.|.+.+..=...|.| ..+|+|+...+.
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 99999999999999999999999877764 2334 4689999998864333333345 567999875543
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=111.84 Aligned_cols=249 Identities=19% Similarity=0.181 Sum_probs=173.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee-cCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeeeCCC
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..-|..+.|...|..|++||.|-.|.+||...+.....+ .+|...|..-.|-|. ..-+++++.|+.+++-..... +
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t-~ 220 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET-G 220 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc-c
Confidence 333899999999999999999999999999888766555 579999988889884 357999999999764433322 2
Q ss_pred eeEeEEeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCcccccee---ccCccc---ceeEEEEcCCCc-EEEEe
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNH---LMGHEN---RVSCLQVSPDGT-AFSSG 174 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~---~~~h~~---~v~~v~~sp~~~-~las~ 174 (304)
..........+.-++..++.-|+. .-|++++.|+.+.-.|+++..+-.. ...+.. ....++..|-.. .||++
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 221111111122245566666654 3588999999999999887543222 223333 456788888654 79999
Q ss_pred ecCCceEEEEeeecCCceE------EEeecC----ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC--Cc--------
Q psy4754 175 SWDTTLRCRLFDLRADKEV------ACYKKD----SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KC-------- 234 (304)
Q Consensus 175 s~d~~i~i~~~d~~~~~~~------~~~~~~----~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~--~~-------- 234 (304)
+.|... ++||.+..... ..+..+ .....+++++|+.++.-|.+...|-.|++|... .+
T Consensus 301 G~dqf~--RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 301 GSDQFA--RVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred Chhhhh--hhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence 999985 78997754321 122111 122357899999887777777788899999522 12
Q ss_pred --eeeEE-eecccc--ceEEEEE-ccCCCEEEEeecCCeeeeccccccc
Q psy4754 235 --CRVNH-LMGHEN--RVSCLQV-SPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 235 --~~~~~-~~~h~~--~i~~l~~-sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
..++. ++||.. .|..+-| -|...+++|||.=|.|-+|+.....
T Consensus 379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 23344 888863 5778876 6888999999988999999876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-10 Score=100.68 Aligned_cols=188 Identities=21% Similarity=0.228 Sum_probs=125.5
Q ss_pred EEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeee
Q psy4754 41 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSV 120 (304)
Q Consensus 41 l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~ 120 (304)
+++-..++.|.+.|..+.+.+..+....+.-..+.++|||++++.++.|+.+ .++|+.+.+.+..++... ....+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~v--sviD~~~~~~v~~i~~G~---~~~~i 83 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTV--SVIDLATGKVVATIKVGG---NPRGI 83 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEE--EEEETTSSSEEEEEE-SS---EEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeE--EEEECCcccEEEEEecCC---CcceE
Confidence 4566778999999999999888887654444567899999999999999985 789999998887776533 24678
Q ss_pred EEcCCCCEEEEEe-CCCeEEEecCCccccceeccC-------cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce
Q psy4754 121 DFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMG-------HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 121 ~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~ 192 (304)
++|+||++++++. ..+.+.++|..+.+.+.++.. ....+.++..+|....++..-.|.- .+++.|....+.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~-~I~vVdy~d~~~ 162 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG-EIWVVDYSDPKN 162 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT-EEEEEETTTSSC
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC-eEEEEEeccccc
Confidence 9999999998875 589999999998887766542 2346788888998887777776643 246667665543
Q ss_pred E--EEeecCceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceee
Q psy4754 193 V--ACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRV 237 (304)
Q Consensus 193 ~--~~~~~~~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~ 237 (304)
+ ..+.... ......|+|+++|++++ .....|-++|..+++.+
T Consensus 163 ~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 163 LKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred cceeeecccc---cccccccCcccceeeecccccceeEEEeeccceEE
Confidence 3 2222222 23567899999987664 34556777776655443
|
... |
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=114.46 Aligned_cols=136 Identities=21% Similarity=0.300 Sum_probs=103.5
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEeCCC--------------ceee--eeecC------------CcCcEEEEEEC
Q psy4754 27 FGATSVDFSVSGR-LLFAGYNDYTINVWDSLK--------------CCRV--NHLMG------------HENRVSCLQVS 77 (304)
Q Consensus 27 ~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~--------------~~~~--~~~~~------------h~~~V~~l~~s 77 (304)
..++|+.|-|.++ .++.+-.+|.+.+||..- +... .+-+. -.+.|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 3489999998654 666778999999997421 1100 00011 12467889999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
|||++|++.|.|+.+ |++|+.+...+...+. ...+..++.|||||+++++|++|..|.||.+..++.+..-.+|+.
T Consensus 300 ~DG~~LA~VSqDGfL--RvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS 375 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFL--RIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS 375 (636)
T ss_pred CCCceEEEEecCceE--EEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccc
Confidence 999999999999996 6788876544332221 122457999999999999999999999999988888888899999
Q ss_pred ceeEEEEcC
Q psy4754 158 RVSCLQVSP 166 (304)
Q Consensus 158 ~v~~v~~sp 166 (304)
+|+.|+|.|
T Consensus 376 WVs~VaFDp 384 (636)
T KOG2394|consen 376 WVSVVAFDP 384 (636)
T ss_pred ceeeEeecc
Confidence 999999997
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-10 Score=104.45 Aligned_cols=214 Identities=15% Similarity=0.072 Sum_probs=132.6
Q ss_pred cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC
Q psy4754 49 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 127 (304)
Q Consensus 49 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 127 (304)
.+.++|..... .+.+..+...+.+..|+|||+.|+-.+. ++...+++||+.+++......... ......|+||++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCC
Confidence 66677765433 3344556778889999999998876554 445557889987665432211111 123578999999
Q ss_pred EEEE-EeCCCe--EEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEE-eecCcee
Q psy4754 128 LLFA-GYNDYT--INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVAC-YKKDSIL 202 (304)
Q Consensus 128 ~l~s-g~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~-~~~~~~~ 202 (304)
.++. ...++. |.++|+.+++ ...+..+.......+|+||++.++..+. ++...++++|+.+++.... +...
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--- 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--- 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC---
Confidence 8765 455664 7777876654 3344555556677899999998776553 4555567778876654322 2111
Q ss_pred eeeeEEEEcCCCCEEEEEeC-CCc--EEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC-Ce--eeeccc
Q psy4754 203 FGATSVDFSVSGRLLFAGYN-DYT--INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TT--LRDEES 273 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~-d~~--i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D-~~--i~~~~~ 273 (304)
.....+|+|||++|+..+. ++. |.++|+.++.. ..+... .......|+|||+.|+-.+.+ +. +.+++.
T Consensus 351 -~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 351 -QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred -CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1234689999999877654 343 45567766543 223222 122345799999988876643 33 444444
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-11 Score=108.25 Aligned_cols=209 Identities=16% Similarity=0.126 Sum_probs=148.2
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC-eeEeEEeccce
Q psy4754 35 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSI 113 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~-~~~~~~~~~~~ 113 (304)
.|...++|....||.+|+|+..+++....+ .|.-. ++|+. + ...|.+..+ .++......
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~------------~p~~~--~s~t~--~--~~~w~L~~~~s~~k~~~~~-- 61 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF------------APIAS--LSGTC--T--YTKWGLSADYSPMKWLSLE-- 61 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeee------------ccchh--ccCcc--e--eEEEEEEeccchHHHHhHH--
Confidence 355679999999999999999887644333 12100 01110 1 123443211 111100000
Q ss_pred eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc
Q psy4754 114 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 191 (304)
Q Consensus 114 ~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~ 191 (304)
.....+.+...++-|...|.|.+|+...++....+ ..|.+.|.++..+.+-..|.|++.|..+ -.|+.....
T Consensus 62 ----~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v--~~~~~~~~~ 135 (541)
T KOG4547|consen 62 ----KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKV--VYILEKEKV 135 (541)
T ss_pred ----HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeE--EEEecccce
Confidence 01123445567888999999999998877655444 4799999999988888899999999885 589998888
Q ss_pred eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC-----CCEEEEe-ecC
Q psy4754 192 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD-----GTAFSSG-SWD 265 (304)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-----g~~lasg-s~D 265 (304)
.++.++... ..+.+++.+|||..+++++ +.|++||+.+.+.+.+|.||.++|.+++|-.+ |.++.++ ..+
T Consensus 136 ~~~~~~~~~--~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 136 IIRIWKEQK--PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred eeeeeccCC--CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 887777654 3568899999999999997 68999999999999999999999999999887 6666654 456
Q ss_pred Ceeeeccc
Q psy4754 266 TTLRDEES 273 (304)
Q Consensus 266 ~~i~~~~~ 273 (304)
..|..|-.
T Consensus 212 r~i~~w~v 219 (541)
T KOG4547|consen 212 RGITVWVV 219 (541)
T ss_pred cceeEEEE
Confidence 66666743
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=102.59 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=130.5
Q ss_pred CCceeEEeeccccceEeeeeccccccc-eeEEEE------cC--------------CCCEEEEeeCCCcEEEEeCCCcee
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFG-ATSVDF------SV--------------SGRLLFAGYNDYTINVWDSLKCCR 60 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~-i~~~~~------~~--------------~g~~l~tg~~dg~v~iwd~~~~~~ 60 (304)
+|+++||||...++..--+.-..+.-+ .++..| +| +-..++-|-.-|.|.+|++..++.
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 789999999999965322222111111 222222 22 334778888999999999999988
Q ss_pred eeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 61 VNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 61 ~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
...+. +|.+.|.++.++.+-..|.|++.|+.+ ..|+....+.++.++.... .+.++.++||+..+++++ +.|
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v--~~~~~~~~~~~~~~~~~~~--~~~sl~is~D~~~l~~as--~~i 166 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKV--VYILEKEKVIIRIWKEQKP--LVSSLCISPDGKILLTAS--RQI 166 (541)
T ss_pred EEEEecCCCCCcceeeecccccCceEecCCceeE--EEEecccceeeeeeccCCC--ccceEEEcCCCCEEEecc--ceE
Confidence 77765 699999999999999999999999874 6899998888877765543 346788999999998875 799
Q ss_pred EEecCCccccceeccCcccceeEEEEcCC-----CcEEEEee
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPD-----GTAFSSGS 175 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~las~s 175 (304)
++||+.+.+.+.+|.||.++|++++|.-+ |.+|.+.-
T Consensus 167 k~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 167 KVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred EEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence 99999999999999999999999999776 66666543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-09 Score=90.76 Aligned_cols=260 Identities=11% Similarity=0.046 Sum_probs=152.7
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCCc-----
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGHE----- 68 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h~----- 68 (304)
++|-+.|..+.+.+..++.-...+ .+ ++|||+.|+.+. .+..|.+||+.+.+.+..+..-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 789999999998877766544333 24 999999776554 48899999999998887765311
Q ss_pred --CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-
Q psy4754 69 --NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK- 145 (304)
Q Consensus 69 --~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~- 145 (304)
..-..++++|||++|+....+..-.+-+.|+.+.+.+..+.-... ..-...+. ..+. .-+.||......+.+
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e-~~~~-~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTAN-DTFF-MHCRDGSLAKVGYGTK 177 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecC-CccE-EEeecCceEEEEecCC
Confidence 123368999999998877654222357899998887765543111 00111111 1111 112233322221111
Q ss_pred cc-ccee--c-cCcccceeEE-EEcC-CCcEEEEeecCCceEEEEeeecCCc-----eEEEeecC-----ceeeeeeEEE
Q psy4754 146 CC-RVNH--L-MGHENRVSCL-QVSP-DGTAFSSGSWDTTLRCRLFDLRADK-----EVACYKKD-----SILFGATSVD 209 (304)
Q Consensus 146 ~~-~~~~--~-~~h~~~v~~v-~~sp-~~~~las~s~d~~i~i~~~d~~~~~-----~~~~~~~~-----~~~~~~~~~~ 209 (304)
++ ...+ + ..-..++..= .|.+ +++.+..... +++ .+.|+...+ ....+... -...+..-++
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V--~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKI--FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeE--EEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 00 0000 0 0100111000 3445 7776655444 775 567753322 11111100 0112223489
Q ss_pred EcCCCCEEEEEe----------CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEEee-cCCeeeecccccc
Q psy4754 210 FSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGS-WDTTLRDEESKNR 276 (304)
Q Consensus 210 ~s~~g~~l~sg~----------~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs-~D~~i~~~~~~~~ 276 (304)
++|+++.+.... ..+.|.++|..+++.+..+.- ..++..++|+||++ +|.+.. .++.|.+.|....
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 999999887742 224799999999999888763 35889999999999 766554 5788888886544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-10 Score=99.82 Aligned_cols=223 Identities=13% Similarity=-0.009 Sum_probs=130.5
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe--E-EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA--F-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV 124 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~--l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~ 124 (304)
..|.+.|...+. .+.+......+.+-+|+|||+. + +....++.-.+++.++..++......... ......|||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECC
Confidence 356666765443 3334334455677899999974 2 24444555556788887665433222211 123468999
Q ss_pred CCCEEEEEeC-----CCeEEEecCCcc--ccceecc-CcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecC-CceEE
Q psy4754 125 SGRLLFAGYN-----DYTINVWDSLKC--CRVNHLM-GHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRA-DKEVA 194 (304)
Q Consensus 125 ~~~~l~sg~~-----dg~i~iwd~~~~--~~~~~~~-~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~-~~~~~ 194 (304)
||+.++..+. +-.+..|++..+ .....+. ++.......+|+|||+.++..+ .++...++++++.. +....
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9998887543 223444665542 1222222 2223446679999999877665 45655455555532 11122
Q ss_pred EeecCceeeeeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeec---CCee
Q psy4754 195 CYKKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW---DTTL 268 (304)
Q Consensus 195 ~~~~~~~~~~~~~~~~s~~g~~l~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~---D~~i 268 (304)
.+.... ..+....|+|||+.|+....+ ..|.+||+.+++. ..+......+....|+|||+.|+-.+. ...|
T Consensus 321 ~lt~~~--~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 321 LLTKKY--RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred EeccCC--CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 221111 123567899999998876543 4689999887754 334433446678999999998875433 2456
Q ss_pred eeccccccc
Q psy4754 269 RDEESKNRY 277 (304)
Q Consensus 269 ~~~~~~~~~ 277 (304)
.++++..+.
T Consensus 398 ~~vdl~~g~ 406 (428)
T PRK01029 398 YLISLITKK 406 (428)
T ss_pred EEEECCCCC
Confidence 666665544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=99.20 Aligned_cols=242 Identities=12% Similarity=0.010 Sum_probs=140.2
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCE---EEEeeCCC--cEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL---LFAGYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~---l~tg~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
.+.+.|..+++.... ......+.+-+|+|||+. +++...+| .|.+.++.+++..+ +....+.....+|+||
T Consensus 166 ~l~~~d~dG~~~~~l---t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 166 ELWSVDYDGQNLRPL---TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPR 241 (428)
T ss_pred eEEEEcCCCCCceEc---ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCC
Confidence 456666666544321 111222566799999973 33444444 56666777664332 2223444556899999
Q ss_pred CCeEEEEeC-CC--ceEEEEeeeCCC---eeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEe--cCCc-cccc
Q psy4754 80 GTAFSSGSW-DT--TLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVW--DSLK-CCRV 149 (304)
Q Consensus 80 ~~~l~sgs~-D~--~i~~~~wd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iw--d~~~-~~~~ 149 (304)
|+.|+-.+. ++ .+.+.+|++..+ ........... ......|+|||+.++..+ .+|...+| ++.. ....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~--~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG--TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 998775542 22 333445776542 22222211111 123568999999877765 46655555 4332 2223
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC---CCc
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYT 225 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~---d~~ 225 (304)
..+..+...+....|+|||+.++..+.+ +.-.+++||+.+++........ ..+....|+|||++|+.... ...
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESE 396 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCce
Confidence 3344444567788999999988866543 3334678999877654332221 13456889999998875432 346
Q ss_pred EEEEeCCCceeeEEeeccccceEEEEEccCC
Q psy4754 226 INVWDSLKCCRVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 226 i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 256 (304)
|.++|+..++. ..+....+.+...+|+|-.
T Consensus 397 L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKT-RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCE-EEeecCCCcccCceecCCC
Confidence 88888876543 3343345556677888753
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=101.68 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=139.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEecCCc------cccceecc-CcccceeEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 116 GATSVDFSVSGRLLFAGYNDYTINVWDSLK------CCRVNHLM-GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
.++.+.|+.++++|++|+.|..+++|++.. .+++.... -|...|.|++|....+.+.+|..++++ .+-|++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V--I~HDiE 135 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV--IKHDIE 135 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee--Eeeecc
Confidence 367889999999999999999999998642 23343322 244789999999888999999999996 478999
Q ss_pred CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce-eeE--EeeccccceEEEEEccC-CCEEEEeec
Q psy4754 189 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVN--HLMGHENRVSCLQVSPD-GTAFSSGSW 264 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~-~~~--~~~~h~~~i~~l~~sp~-g~~lasgs~ 264 (304)
+.+.+.++........|..+..+|..+.+++.+.++.|.+||..... ... -..........+.|+|. ...|++.+.
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence 98888887766555568899999999999999999999999976543 111 12223456788999995 567888888
Q ss_pred CCeeeeccccccchhheeeccccCCce----eEEEEEecCCccC
Q psy4754 265 DTTLRDEESKNRYMQYLLRSRITKPTQ----GLTVYFQDRGRSI 304 (304)
Q Consensus 265 D~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 304 (304)
-+-+-+||.+.+..+.+.++.....++ =|-+-++|.|-+|
T Consensus 216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee
Confidence 899999998776554444444333322 2666777766553
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-10 Score=95.71 Aligned_cols=218 Identities=17% Similarity=0.280 Sum_probs=147.5
Q ss_pred CceeEEeeccc-cceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC----ceeeeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~l~~s 77 (304)
|-|+|||--.+ ++--|.+. +.....++++++.++...|+.|-..|++.-+.+.. ...++....|...|..+-|+
T Consensus 45 drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~ 123 (404)
T KOG1409|consen 45 DRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS 123 (404)
T ss_pred cceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec
Confidence 56789984433 32222211 22334489999999999999999999999998753 34556667899999999999
Q ss_pred CCCCeEEEEeCCCceEEEEeee-CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC--CccccceeccC
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDL-RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVNHLMG 154 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~~ 154 (304)
...+++++.+.|+.+ .|-- +.++.+..+.... ..+...+... +.+.|...|.|..-.+ .....+.++.+
T Consensus 124 ~~~e~V~s~~~dk~~---~~hc~e~~~~lg~Y~~~~---~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~ 195 (404)
T KOG1409|consen 124 LTHEWVLSTGKDKQF---AWHCTESGNRLGGYNFET---PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNG 195 (404)
T ss_pred CCceeEEEeccccce---EEEeeccCCcccceEeec---cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcC
Confidence 999999999999885 3432 3333332222111 0111112111 5556666677666543 33456778899
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
|.+.+.+++|.|....+.+|..|..+ .+||+...+-+ .+........|..+...+--+.+++++.||.|-+|+..
T Consensus 196 h~~~~~~l~Wd~~~~~LfSg~~d~~v--i~wdigg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 196 HTGEVTCLKWDPGQRLLFSGASDHSV--IMWDIGGRKGT-AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cccceEEEEEcCCCcEEEeccccCce--EEEeccCCcce-eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999999999999986 48998654332 22222222345666666777889999999999999743
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-10 Score=98.03 Aligned_cols=265 Identities=15% Similarity=0.202 Sum_probs=159.7
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC--e
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--A 82 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~--~ 82 (304)
.+++|+++++.....++..... --+..|++|..+.| --..+.+.+|+......+.+ +-|...|..+.++|... .
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCce
Confidence 4789999996554444443322 14788988865432 22345899999876433322 34678899999999644 3
Q ss_pred EEE-----EeCCCceEEEEeeeCCCeeEeEEeccceeecee--eeEEcCCCCE-EEEE-----------eCCCeEEEecC
Q psy4754 83 FSS-----GSWDTTLRCRLFDLRADKEVACYKKDSILFGAT--SVDFSVSGRL-LFAG-----------YNDYTINVWDS 143 (304)
Q Consensus 83 l~s-----gs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~-l~sg-----------~~dg~i~iwd~ 143 (304)
+++ +|.-.. +++|......+-.. ......+... ...|.+-+.- |+.+ ....++++.++
T Consensus 182 vAvyvPe~kGaPa~--vri~~~~~~~~~~~-~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 182 VAVYVPEKKGAPAS--VRIYKYPEEGQHQP-VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred EEEEccCCCCCCcE--EEEeccccccccch-hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 332 233334 46777652211100 0000011111 2233333332 1111 12346666666
Q ss_pred CccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 144 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 144 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
........+ .-.++|.++.|+|+++-|+.+-.=---++.++|++. ..+..+... +-+.+-|+|.|++++.++-+
T Consensus 259 ~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~eg----pRN~~~fnp~g~ii~lAGFG 332 (566)
T KOG2315|consen 259 QGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEG----PRNTAFFNPHGNIILLAGFG 332 (566)
T ss_pred cCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCC----CccceEECCCCCEEEEeecC
Confidence 533332222 235899999999999888766432222356888874 445444332 34778899999998886654
Q ss_pred ---CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee------cCCeeeeccccc-cchhheeec
Q psy4754 224 ---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS------WDTTLRDEESKN-RYMQYLLRS 284 (304)
Q Consensus 224 ---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs------~D~~i~~~~~~~-~~~~~~~~~ 284 (304)
|.|.|||+.+.+++..+..- .-+-..|+|||++|+|++ -|..+++|++.. .+..+++++
T Consensus 333 NL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s 401 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS 401 (566)
T ss_pred CCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH
Confidence 78999999987777776543 345679999999999987 367889998754 444555554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-08 Score=87.25 Aligned_cols=253 Identities=16% Similarity=0.150 Sum_probs=144.1
Q ss_pred CcEEEEeC--CCcee--eeeecCCcCcEEEEEECCCCCeEEEEeCC--CceEEEEeeeCCC-eeEeEEeccc-eeeceee
Q psy4754 48 YTINVWDS--LKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWD--TTLRCRLFDLRAD-KEVACYKKDS-ILFGATS 119 (304)
Q Consensus 48 g~v~iwd~--~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~sgs~D--~~i~~~~wd~~~~-~~~~~~~~~~-~~~~~~~ 119 (304)
+.|..|+. .+++. +..+. -...-.-|+++|++++|.+.... ..-.+..|++... ..+....... .-...+.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 67888777 33432 22221 22344568899999999988764 2222456666543 2222221111 1123467
Q ss_pred eEEcCCCCEEEEEeC-CCeEEEecCCcccccee---cc-----------CcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 120 VDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNH---LM-----------GHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 120 ~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~---~~-----------~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
+.+++++++++++.. +|.|.++++.....+.. .. .-.....++.++|+++++++...... +|++
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D-~v~~ 170 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD-RVYV 170 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT-EEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC-EEEE
Confidence 889999999999875 89999999876322211 11 11234678999999998877653222 2567
Q ss_pred eeecCCc--eE--EEeecCceeeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCC--Cce--eeEEeecc------ccceEE
Q psy4754 185 FDLRADK--EV--ACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSL--KCC--RVNHLMGH------ENRVSC 249 (304)
Q Consensus 185 ~d~~~~~--~~--~~~~~~~~~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~--~~~--~~~~~~~h------~~~i~~ 249 (304)
|++.... .. ..+... ...+...++|+|+++++.. ...+++|.+++.. ++. .+..+... ......
T Consensus 171 ~~~~~~~~~l~~~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEE-TTS-TEEEEEEEECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEeCCCceEEEeeccccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 8876544 21 112111 1134678999999998765 4556789999876 332 22222211 125788
Q ss_pred EEEccCCCEEEEee-cCCeeeecccccc-chhheeeccccCCceeEEEEEecCCcc
Q psy4754 250 LQVSPDGTAFSSGS-WDTTLRDEESKNR-YMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 250 l~~sp~g~~lasgs-~D~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
|+++|||++|..+. .+.+|-+++++.. ........-.+....+-.+.++|+|+.
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 99999999876654 5678999987432 222222222233344556667777764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=102.47 Aligned_cols=184 Identities=13% Similarity=0.140 Sum_probs=140.7
Q ss_pred EEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce-------
Q psy4754 41 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI------- 113 (304)
Q Consensus 41 l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~------- 113 (304)
|+.++....|.-++++.|..+..+....+++.++.+++-..+|+.|+.|+.+ -.||.+.......+.....
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V--EfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV--EFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE--EEecchhhhhheeeecccccCCCccc
Confidence 4455556678899999999999998888999999999988899999999985 6899987655444332211
Q ss_pred --eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC
Q psy4754 114 --LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 190 (304)
Q Consensus 114 --~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~ 190 (304)
...++++.|+.+|-.++.|+.+|.|.+||+++.+++..- .+...+|..+.|.+.++.=...|.|..+ +++||-.++
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~-~kiWd~~~G 304 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRI-LKIWDECTG 304 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHH-hhhcccccC
Confidence 123789999999999999999999999999988876532 2344578888887653332333457776 689999998
Q ss_pred ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 191 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
+.+..+... ..++.+++-|++-+++++-++..+..|=
T Consensus 305 k~~asiEpt---~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 305 KPMASIEPT---SDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred Cceeecccc---CCcCceeeecCCceEEEecCCCcceeEE
Confidence 887766443 2467888999999999998888877663
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-10 Score=96.75 Aligned_cols=275 Identities=12% Similarity=0.113 Sum_probs=164.4
Q ss_pred CceeEEeeccccceEeeeeccccccc-eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFG-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~-i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.++++|||+.+|.+...|........ -.-..||.|++++|.-..+ .|.||+..+...+..-.--...|...+|+|.++
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSN 359 (698)
T ss_pred CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcc
Confidence 36799999999988777665321222 2457899999999877665 699999876544322222346788999999988
Q ss_pred eEEEEe---CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE----------eCCCeEEEecCCcccc
Q psy4754 82 AFSSGS---WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG----------YNDYTINVWDSLKCCR 148 (304)
Q Consensus 82 ~l~sgs---~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg----------~~dg~i~iwd~~~~~~ 148 (304)
.|+-=. .+---++.+..+.+.+.++...... .+-+.+-|..+|.+|+.- +.-..+.|+.++....
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 776321 1112223456666666655432211 112345566677777652 1111334444433222
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecC-Cc---eEEEeecCceeeeeeEEEEcCCCCEEEEE---
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRA-DK---EVACYKKDSILFGATSVDFSVSGRLLFAG--- 220 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~-~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~sg--- 220 (304)
.-....-...|...+|-|.|..|++-+. +....+..|.+.+ .. .+..+.. ..++.+-|+|.|++++.+
T Consensus 438 pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEec
Confidence 1122334567888999999988775543 3333456676652 11 1222222 235788999999998885
Q ss_pred eCCCcEEEEeCCC--ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCC
Q psy4754 221 YNDYTINVWDSLK--CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKP 289 (304)
Q Consensus 221 ~~d~~i~iwd~~~--~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~ 289 (304)
+..|.+.++|..- .+... ...|. .-+.+.|.|.|++++|+|.-...+ .+.+|.-+.+++++-+.
T Consensus 514 s~~g~l~F~D~~~a~~k~~~-~~eh~-~at~veWDPtGRYvvT~ss~wrhk---~d~GYri~tfqGrll~~ 579 (698)
T KOG2314|consen 514 SRRGDLEFYDTDYADLKDTA-SPEHF-AATEVEWDPTGRYVVTSSSSWRHK---VDNGYRIFTFQGRLLKE 579 (698)
T ss_pred ccccceEEEecchhhhhhcc-Ccccc-ccccceECCCCCEEEEeeehhhhc---cccceEEEEeecHHHHH
Confidence 4568899999763 22111 22343 446789999999999998533222 13466666666665544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-09 Score=102.21 Aligned_cols=241 Identities=16% Similarity=0.143 Sum_probs=153.4
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecC--C------------cCcEEEEEECCCCCeEEEEeCCCceEE
Q psy4754 30 TSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMG--H------------ENRVSCLQVSPDGTAFSSGSWDTTLRC 94 (304)
Q Consensus 30 ~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~--h------------~~~V~~l~~s~d~~~l~sgs~D~~i~~ 94 (304)
..+++++ ++.++++-+..+.|++||... ..+..+.+ . -..-..+++.++++.|+.+...+. ++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~-~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH-AL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc-eE
Confidence 3578876 466888888899999999753 33333321 1 122468899998876655443332 25
Q ss_pred EEeeeCCCeeEeEEecc---------------ceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceecc-----
Q psy4754 95 RLFDLRADKEVACYKKD---------------SILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLM----- 153 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~---------------~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~----- 153 (304)
+.+|..+.. +..+... ........++++++ +..+++...++.|++||..++.. ..+.
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-RVFSGDGYE 726 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-EEEecCCcc
Confidence 678876543 2222110 00112356889994 55556666789999999765432 1111
Q ss_pred ----C------cccceeEEEEcCCCcEE-EEeecCCceEEEEeeecCCceEEEeecC-------------------ceee
Q psy4754 154 ----G------HENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKD-------------------SILF 203 (304)
Q Consensus 154 ----~------h~~~v~~v~~sp~~~~l-as~s~d~~i~i~~~d~~~~~~~~~~~~~-------------------~~~~ 203 (304)
+ .-.....|+++|+++.+ ++-+.++. |++||+.++......... ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~--Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS--IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe--EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1 11345679999998744 45555566 478998765432111000 0112
Q ss_pred eeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec--------------cccceEEEEEccCCCEEEEeecCCeee
Q psy4754 204 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--------------HENRVSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~--------------h~~~i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
....++++++|.++++-..++.|++||..++... ++.+ .-.....|+++++|+.+++-+.+..||
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 3468899999999999888999999998776543 2322 123578899999999999999999999
Q ss_pred eccccccc
Q psy4754 270 DEESKNRY 277 (304)
Q Consensus 270 ~~~~~~~~ 277 (304)
+|++..+.
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99986643
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=108.55 Aligned_cols=178 Identities=20% Similarity=0.184 Sum_probs=132.0
Q ss_pred CceeEEeeccccceEeeeeccccccce--eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGA--TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
++.+-+||+..+.++...+...+..-. .-+.++++.-++++|+.-+.|.+|+...-+....+.+|.+.+..+.++.||
T Consensus 108 ~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg 187 (967)
T KOG0974|consen 108 RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG 187 (967)
T ss_pred CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC
Confidence 566778888887666555544332222 234456677799999999999999988544444688999999999999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccc-ce
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RV 159 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-~v 159 (304)
.+++|.|.|+++ |+|++.+.+...+.-. .+...+-.+.|.|. .+++++.|-+.++|+.. ...+..+.+|.. .+
T Consensus 188 ~~i~s~SdDRsi--RlW~i~s~~~~~~~~f-gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~i 261 (967)
T KOG0974|consen 188 RYIASVSDDRSI--RLWPIDSREVLGCTGF-GHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGI 261 (967)
T ss_pred cEEEEEecCcce--eeeecccccccCcccc-cccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcce
Confidence 999999999995 7999988766542110 01112345667776 89999999999999643 333446677764 58
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
..++..++....+|++.|+.+ ++|++.
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~l--k~~~l~ 288 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTL--KLWDLN 288 (967)
T ss_pred eEEEEcCCceEEEeeccCcch--hhhhhh
Confidence 999999999999999999996 577753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-07 Score=77.77 Aligned_cols=274 Identities=15% Similarity=0.111 Sum_probs=163.0
Q ss_pred CceeEEeeccccc-eEeeeeccccccceeEEEEcCCCCEEEEeeC---CCcEEEEeCCC--cee--eeeecCCcCcEEEE
Q psy4754 3 KNHCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLK--CCR--VNHLMGHENRVSCL 74 (304)
Q Consensus 3 ~~~v~~wd~~~~~-~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~---dg~v~iwd~~~--~~~--~~~~~~h~~~V~~l 74 (304)
++-|.+|++.+.. ++...+.-......+-++|+|+++.|+++-. +|.|.-|.... |+. +.....-..+-.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3458899988542 2222222233334788999999998887744 58888887764 432 22211122233678
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEe----EEecc-------ceeeceeeeEEcCCCCEEEEEeC-CCeEEEec
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA----CYKKD-------SILFGATSVDFSVSGRLLFAGYN-DYTINVWD 142 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~----~~~~~-------~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd 142 (304)
+++++|++|+++...... +.++-++..-.+. ..... ....++....+.|+++++++.+- .-.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~-v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGS-VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCce-EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 999999999999865432 4666664422111 11110 01112567889999999888632 35788888
Q ss_pred CCcccccee---ccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCc--eEEEe---ecC-ceeeeeeEEEEcC
Q psy4754 143 SLKCCRVNH---LMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADK--EVACY---KKD-SILFGATSVDFSV 212 (304)
Q Consensus 143 ~~~~~~~~~---~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~--~~~~~---~~~-~~~~~~~~~~~s~ 212 (304)
+..+..-.. ...-......|.|+|++++...... +++|.++-++-..++ .++.+ +.. ......-.+..+|
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 774432111 1122345678999999998776554 777654444432121 22222 111 0112345788999
Q ss_pred CCCEEEEEeCC-CcEEEEeCCC--ce--eeEEeeccccceEEEEEccCCCEEEEeecC-Ceeeeccccccc
Q psy4754 213 SGRLLFAGYND-YTINVWDSLK--CC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRDEESKNRY 277 (304)
Q Consensus 213 ~g~~l~sg~~d-~~i~iwd~~~--~~--~~~~~~~h~~~i~~l~~sp~g~~lasgs~D-~~i~~~~~~~~~ 277 (304)
||++|-+.... ..|-+|.+.. ++ .+.....+........|+|.|++|+.+..| ..|.++..++..
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99998886543 3577776543 22 122233344557889999999999888764 568888665554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-08 Score=80.94 Aligned_cols=221 Identities=17% Similarity=0.223 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCEEEEee-CCCcEEEEeCCC-ceeee--eecCCcCc----------EEEEEECCCCCeEEEEeCCCceEE
Q psy4754 29 ATSVDFSVSGRLLFAGY-NDYTINVWDSLK-CCRVN--HLMGHENR----------VSCLQVSPDGTAFSSGSWDTTLRC 94 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~-~dg~v~iwd~~~-~~~~~--~~~~h~~~----------V~~l~~s~d~~~l~sgs~D~~i~~ 94 (304)
-+-++++++|++++++. ..|.|.++.+.+ |.... .+..|.+. +-...+.|++++|++... |+=++
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-G~Dri 169 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-GTDRI 169 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-CCceE
Confidence 36789999999888774 568999999854 43211 12234444 778899999999998753 23345
Q ss_pred EEeeeCCCeeEeEEecc-ceeeceeeeEEcCCCCEEEEEeC-CCeEEEecCCcc-ccceecc---------CcccceeEE
Q psy4754 95 RLFDLRADKEVACYKKD-SILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKC-CRVNHLM---------GHENRVSCL 162 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~-~~~~~~~---------~h~~~v~~v 162 (304)
.++++..+......+.. ..-.+..-+.|+|++++++...+ +++|.+|+.... ..+.+++ .-.....++
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 78998854432211100 11234678999999999988777 899999986552 2222221 123456778
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCC--ceE--EEeecCceeeeeeEEEEcCCCCEEEEEeCCC-cEEEEe--CCCce
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRAD--KEV--ACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWD--SLKCC 235 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~--~~~--~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-~i~iwd--~~~~~ 235 (304)
.++|||++|..+..-... |.+|.+... +.. .....+. .......|+|+|++|+++.++. +|.+|. ..+++
T Consensus 250 his~dGrFLYasNRg~ds-I~~f~V~~~~g~L~~~~~~~teg--~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 250 HISPDGRFLYASNRGHDS-IAVFSVDPDGGKLELVGITPTEG--QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EECCCCCEEEEecCCCCe-EEEEEEcCCCCEEEEEEEeccCC--cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 899999999987653322 356655433 221 1112222 1246788999999999988764 588885 44554
Q ss_pred eeEEee-ccccceEEEEEc
Q psy4754 236 RVNHLM-GHENRVSCLQVS 253 (304)
Q Consensus 236 ~~~~~~-~h~~~i~~l~~s 253 (304)
.-.... .+.....||.|.
T Consensus 327 L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 327 LTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEecccccCCCCcEEEEEc
Confidence 322222 244556777775
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-07 Score=82.35 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=138.2
Q ss_pred CCceeEEeeccccceEeeeecccc-----ccceeEEEEcCCCCEEEEee-C-CCcEEEEeCCCceeeeeecCCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI-----LFGATSVDFSVSGRLLFAGY-N-DYTINVWDSLKCCRVNHLMGHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~g~~l~tg~-~-dg~v~iwd~~~~~~~~~~~~h~~~V~~l 74 (304)
.++.|.+||+.+.++...++.... ...-..++++|||++|+... . +..|-+.|+.+++.+..+.-- +...-.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEE
Confidence 357799999999998766664322 11245789999999888665 4 799999999999888766532 222222
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEe--E---EeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCcc--
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA--C---YKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC-- 146 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~--~---~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~-- 146 (304)
..++++.. +- +.|+... ...+....... . +..+......+. .|.+ ++++++.... |.|.+.|+...
T Consensus 154 ~t~e~~~~-~~-~~Dg~~~--~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~ 227 (352)
T TIGR02658 154 PTANDTFF-MH-CRDGSLA--KVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDA 227 (352)
T ss_pred EecCCccE-EE-eecCceE--EEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcc
Confidence 33322222 22 2354431 11111111111 1 001000000112 3445 7777766555 99999995332
Q ss_pred ---ccceeccC-------cccceeEEEEcCCCcEEEEeec--------CCceEEEEeeecCCceEEEeecCceeeeeeEE
Q psy4754 147 ---CRVNHLMG-------HENRVSCLQVSPDGTAFSSGSW--------DTTLRCRLFDLRADKEVACYKKDSILFGATSV 208 (304)
Q Consensus 147 ---~~~~~~~~-------h~~~v~~v~~sp~~~~las~s~--------d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
..+..+.. ..+.+.-++++|+++.+..... +..=.++++|..+.+.+..+.... .+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~i 304 (352)
T TIGR02658 228 KFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSI 304 (352)
T ss_pred eecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeE
Confidence 22221110 2233344899999987776331 111235899999998888776553 46889
Q ss_pred EEcCCCC-EEEEEe-CCCcEEEEeCCCceeeEEe
Q psy4754 209 DFSVSGR-LLFAGY-NDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 209 ~~s~~g~-~l~sg~-~d~~i~iwd~~~~~~~~~~ 240 (304)
+++||++ +|.+.. .++.|.++|..+++.++++
T Consensus 305 avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 305 NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999 766655 5788999999999888876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-08 Score=83.70 Aligned_cols=260 Identities=17% Similarity=0.128 Sum_probs=158.3
Q ss_pred CceeEEeeccccceEe--eeeccccccceeEEEEc---CCCC-EEEEeeCCCcEEEEeCCCceeeeeecCC---cCc---
Q psy4754 3 KNHCRLFDLRADKEVA--CYKKDSILFGATSVDFS---VSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGH---ENR--- 70 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~--~~~~~~~~~~i~~~~~~---~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h---~~~--- 70 (304)
.+++-+|+++..+..+ ..+...+ .++..+.|. .+|. .++-+..+|.|.++....-+...++++= .-.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 4678889998887654 1221111 114444554 3555 5677888999999997655544444432 112
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE--eEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCc-c
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV--ACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK-C 146 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~--~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~-~ 146 (304)
-.++.|++.+..++++-.++.+. .-+....... ..++.+. +.+-.+.|+. +.+.+++|+.|+.+..||++- .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~--~v~~t~~~le~vq~wk~He--~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSIS--GVYETEMVLEKVQTWKVHE--FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEE--EEecceeeeeecccccccc--eeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 34788999888888887777754 2222222111 1233332 2233345553 456889999999999999883 2
Q ss_pred ccce-eccCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCC--EEEEEe
Q psy4754 147 CRVN-HLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGR--LLFAGY 221 (304)
Q Consensus 147 ~~~~-~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~--~l~sg~ 221 (304)
+.+. ...-|...|.++.-+| .+..++||+.|..+ ++||.|+. +++..- ....+|+.+..+|.-. .|+++-
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i--~~~DtRnm~kPl~~~---~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI--RVLDTRNMGKPLFKA---KVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccce--eeeehhcccCccccC---ccccceEEEEecchhhhHHHHHHH
Confidence 2332 2467888999998876 56789999999996 69999964 333222 2235788888888744 333332
Q ss_pred CCCcEEEEeCCCc--e---eeEEeeccccceEEEEEccCCCEEEEee-cCCeee-eccc
Q psy4754 222 NDYTINVWDSLKC--C---RVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLR-DEES 273 (304)
Q Consensus 222 ~d~~i~iwd~~~~--~---~~~~~~~h~~~i~~l~~sp~g~~lasgs-~D~~i~-~~~~ 273 (304)
. +-.+|-+.... + .+...+.|.+-...-.|......|||+| +|+.|+ +|-.
T Consensus 275 h-~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 275 H-NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred h-cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 2 22344433221 1 3445566776555555644446789876 688866 7743
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=114.25 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=158.5
Q ss_pred EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceee
Q psy4754 40 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~ 119 (304)
.+.....++...-|...-+.. .++.|-..|.++.-+|..-+.+||+.|+.+ ++|....++++.+++.... ..++.
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv--~~~~w~~~~~v~~~rt~g~-s~vtr 2256 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSV--RMFEWGHGQQVVCFRTAGN-SRVTR 2256 (2439)
T ss_pred cCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceE--EEEeccCCCeEEEeeccCc-chhhh
Confidence 344444455555555432222 234466788998889988899999999996 5666677788888876544 45678
Q ss_pred eEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec---CCceEEEEeeecCC-ceEEE
Q psy4754 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW---DTTLRCRLFDLRAD-KEVAC 195 (304)
Q Consensus 120 ~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~---d~~i~i~~~d~~~~-~~~~~ 195 (304)
+.|+.+|+.+..+..||.+.+|.+. ..+....+.|........|-. ..+++++. ++. +.+||.--. ..-..
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n--~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRN--VCLWDTLLPPMNSLV 2331 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCc--ccchhcccCccccee
Confidence 8899999999999999999999876 455666778888888888765 45666543 334 468985321 11112
Q ss_pred eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 196 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
...+ ..+++.+++-|..+.|++|+.+|.|.+||+...+..++++. +. .-.+|++|+.-+.|++|+...
T Consensus 2332 ~~~H--~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2332 HTCH--DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred eeec--CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence 2222 24679999999999999999999999999987665544432 34 567899999999999999876
Q ss_pred cchhheeec
Q psy4754 276 RYMQYLLRS 284 (304)
Q Consensus 276 ~~~~~~~~~ 284 (304)
....+-+.+
T Consensus 2400 ~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2400 FGLLHTFPS 2408 (2439)
T ss_pred cchhhcCch
Confidence 554444443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-07 Score=76.13 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=139.2
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEEC-CCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 31 SVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS-PDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 31 ~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s-~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
+..|.+ ++.++++--..+.|..|+..+++... +... . ...+++. ++++++++ ..++. .++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~-~~~~~---~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVA-DSGGI---AVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEE-ETTCE---EEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEE-EcCce---EEEecCCCcEEEEe
Confidence 467887 77788888889999999998876543 2211 1 5567777 66555555 44443 45588776544333
Q ss_pred ec--cc-eeeceeeeEEcCCCCEEEEEeCC--------CeEEEecCCccccceeccCcccceeEEEEcCCCcEEE-Eeec
Q psy4754 109 KK--DS-ILFGATSVDFSVSGRLLFAGYND--------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSW 176 (304)
Q Consensus 109 ~~--~~-~~~~~~~~~~s~~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~ 176 (304)
.. .. .....+.+++.++|++.++.... |.|..++.. ++ .......-...+.++|+|+++.|. +-+.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccc
Confidence 32 11 23456789999999977765433 557777765 22 222333345678999999998766 4455
Q ss_pred CCceEEEEeeecCCce----EEEe-ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEE
Q psy4754 177 DTTLRCRLFDLRADKE----VACY-KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 251 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~----~~~~-~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~ 251 (304)
.+. |+.+++..... ...+ .........-.+++.++|++.++....+.|.+++.. ++.+..+.-....+++++
T Consensus 155 ~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 555 45677753221 1112 111111125678999999999998888999999976 778877776656899999
Q ss_pred Ec-cCC-CEEEEee
Q psy4754 252 VS-PDG-TAFSSGS 263 (304)
Q Consensus 252 ~s-p~g-~~lasgs 263 (304)
|. |+. .+++|.+
T Consensus 232 fgg~~~~~L~vTta 245 (246)
T PF08450_consen 232 FGGPDGKTLYVTTA 245 (246)
T ss_dssp EESTTSSEEEEEEB
T ss_pred EECCCCCEEEEEeC
Confidence 94 554 4555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-08 Score=85.46 Aligned_cols=258 Identities=14% Similarity=0.189 Sum_probs=164.1
Q ss_pred CceeEEeeccccceEeeeecccccccee-EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGAT-SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~-~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~ 80 (304)
++++.+||..++..++.+.......... -+.|+.+.+++|=- ....+.|+++...-....+.. ....|+..+|+|.+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 5679999999999888777654433233 68898887776533 334699999732211111111 13678889999975
Q ss_pred Ce--EEE-----EeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-----------eCCCeEEEec
Q psy4754 81 TA--FSS-----GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-----------YNDYTINVWD 142 (304)
Q Consensus 81 ~~--l~s-----gs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-----------~~dg~i~iwd 142 (304)
+. |+. .+.++. +++|.+...+.+.....- ...-..+.|.+.|++++.- .....+.+++
T Consensus 186 n~~~la~~tPEk~~kpa~--~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 186 NHDELAYWTPEKLNKPAM--VRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCceEEEEccccCCCCcE--EEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 42 332 345666 468888765555432110 0112356777777766542 1234567777
Q ss_pred CCccccceeccCcccceeEEEEcCCCcEEEEee--cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 143 SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS--WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 143 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s--~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
+..... .....-.++|...+|.|.+..|++++ .+.. +.++|++.. ....+.... -+.+.|+|.+++++.+
T Consensus 262 ~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~--~s~~~lr~N-l~~~~Pe~~----rNT~~fsp~~r~il~a 333 (561)
T COG5354 262 ITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS--VSVFDLRGN-LRFYFPEQK----RNTIFFSPHERYILFA 333 (561)
T ss_pred eccccc-ceeccccccceeeeecccCCceeEEecccccc--eeecccccc-eEEecCCcc----cccccccCcccEEEEe
Confidence 654332 22225578999999999999888776 4555 468998875 322222221 2567799999999886
Q ss_pred eCC---CcEEEEeCCCceeeE-EeeccccceEEEEEccCCCEEEEee------cCCeeeeccccc
Q psy4754 221 YND---YTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGS------WDTTLRDEESKN 275 (304)
Q Consensus 221 ~~d---~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~lasgs------~D~~i~~~~~~~ 275 (304)
+-| |.|.+||......+. .+.+-+ ..-+.|+||++++.+.- -|..|++|+...
T Consensus 334 gF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 334 GFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred cCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 655 679999977655444 555533 34568999999988764 478899997643
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-11 Score=103.29 Aligned_cols=214 Identities=17% Similarity=0.217 Sum_probs=150.3
Q ss_pred eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC-------eeEeEEeccceeeceeeeEEcCCCCEEEEEe
Q psy4754 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVACYKKDSILFGATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 61 ~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~ 133 (304)
+..+.||...|+.++--.+.+-++|+|.|+++ ++|.++.+ .+..+|+.+. .+++++.|-.+.++++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTV--KLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTV--KLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceE--EEEEeccccCccccceeeeEhhhcc--Ccccceeeeeccceeeec-
Confidence 44567999999998877778899999999996 68998642 2334455443 356788888888887765
Q ss_pred CCCeEEEecCCccccceeccC--cccceeEEEEcC--CCcE-EEEeecCCceEEEEeeecCCceEEEeecC---ceeeee
Q psy4754 134 NDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSP--DGTA-FSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGA 205 (304)
Q Consensus 134 ~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~sp--~~~~-las~s~d~~i~i~~~d~~~~~~~~~~~~~---~~~~~~ 205 (304)
|+.|++||..-+..+.++.. ..+.+..+..-| +..+ +|-|+...++ +++|.+..+.+..++.- .....+
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTV--Kl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTV--KLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhh--eeeecccccceeeEEeccCCCCchhe
Confidence 89999999765555543321 112233333333 3333 4445778886 58999998876665432 122336
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeee-ccccccchhheee
Q psy4754 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRD-EESKNRYMQYLLR 283 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~-~~~~~~~~~~~~~ 283 (304)
.+++..|.|+.++++-+.|.|.+.|..+|..++.+...+-....++ .|..+.|+....|.++.+ |....+-++|..+
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 7889999999999999999999999999988887765554444444 355678888888999887 8777777777665
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=89.90 Aligned_cols=210 Identities=18% Similarity=0.208 Sum_probs=154.1
Q ss_pred eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
..++.++||.+.|.....-|...-+++.+.|.++ |+|--++..+...--.+...-+++.+.+.++...|+.|-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtv--rv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTV--RVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEcccccee--eeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 4566678999999887777877889999999996 56655443332211111111245678888888899999999999
Q ss_pred EEecC----CccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeec-CCc----------------------
Q psy4754 139 NVWDS----LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADK---------------------- 191 (304)
Q Consensus 139 ~iwd~----~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~-~~~---------------------- 191 (304)
.-+.+ ++...++....|...|..+-|+-..+++++.+.|..+. |... .+.
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~---~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA---WHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE---EEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 88753 34445666788999999999998888999999998752 3211 000
Q ss_pred -------------------eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc-eeeEEeeccccceEEEE
Q psy4754 192 -------------------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQ 251 (304)
Q Consensus 192 -------------------~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~ 251 (304)
.+..++ .+...+.++.|.|....|++|.+|..+.+||+.-. .....+.+|...|..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 011111 11235678899999999999999999999997533 23556889999999999
Q ss_pred EccCCCEEEEeecCCeeeeccccc
Q psy4754 252 VSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 252 ~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+.+--+.+.+++.|+.|-+|+.+.
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhheeeeeccCCCeEEEEeccc
Confidence 999999999999999999997643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-07 Score=94.73 Aligned_cols=228 Identities=13% Similarity=0.142 Sum_probs=142.3
Q ss_pred CCceeEEeeccccceEeeeeccc------------cccceeEEEEcCCCCEEE-EeeCCCcEEEEeCCCceeeeeecC--
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDS------------ILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLKCCRVNHLMG-- 66 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~------------~~~~i~~~~~~~~g~~l~-tg~~dg~v~iwd~~~~~~~~~~~~-- 66 (304)
+.+.|++||..+... ..+.... ....-..+++.+++..|+ +-...+.|+++|..++. +.++.+
T Consensus 588 ~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G 665 (1057)
T PLN02919 588 NHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNG 665 (1057)
T ss_pred CCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccC
Confidence 567899999876533 2222110 111247899998877554 44456789999987653 322211
Q ss_pred C---------------cCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc-------------ceeece
Q psy4754 67 H---------------ENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-------------SILFGA 117 (304)
Q Consensus 67 h---------------~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~-------------~~~~~~ 117 (304)
. -..-..++++| ++..+++.+.++. +++||...+... .+..+ ......
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~--I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P 742 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ--IWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQP 742 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe--EEEEECCCCeEE-EEecCCccccCCCCccccccccCc
Confidence 0 01235789999 5666677766666 478887654332 11111 011224
Q ss_pred eeeEEcCCCCEEEEE-eCCCeEEEecCCccccce-------------eccC--------cccceeEEEEcCCCcEEEEee
Q psy4754 118 TSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVN-------------HLMG--------HENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~-------------~~~~--------h~~~v~~v~~sp~~~~las~s 175 (304)
..++++|+++.++.+ ..++.|++||+.++.... .+.. .-....+++++|+|+.+++-+
T Consensus 743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs 822 (1057)
T PLN02919 743 SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS 822 (1057)
T ss_pred cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC
Confidence 568999999865554 557999999987543110 0000 112346889999999888888
Q ss_pred cCCceEEEEeeecCCceEEEeecC-----------ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 176 WDTTLRCRLFDLRADKEVACYKKD-----------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
.++.| ++||..+.......... .....+..++++++|+.+++-..++.|++||+.+++.
T Consensus 823 ~N~rI--rviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 823 YNHKI--KKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEE--EEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 88875 68998776543322111 0112357899999999999988899999999887643
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-10 Score=109.72 Aligned_cols=195 Identities=16% Similarity=0.261 Sum_probs=141.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
..+|.++.-+|...+.+||+.||.|++|....++.+-.++ +-...|+.+.|+.+|+.+..+-.||-+ .+|... .++
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l--~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDL--SLWQAS-PKP 2284 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCce--eecccC-Ccc
Confidence 3457778888989999999999999999988777665554 223789999999999988877778885 688876 333
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEE---eCCCeEEEecCCcc--ccceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAG---YNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg---~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
...++-+.. +.+...|-. ..++++ +.++.+.+||.... .-... ..|...++++++-|..+.|++||.+|.
T Consensus 2285 ~~s~qchnk--~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNK--ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred eeccccCCc--cccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc
Confidence 333332221 223344432 344443 45789999995432 11122 789999999999999999999999999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
+ .+||++.-+..+.++. +. ...++++|+..|.|+||++.....++++..
T Consensus 2360 v--~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2360 V--CLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred E--EEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 6 5999987666555532 33 578899999999999999887766666543
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=85.27 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=134.1
Q ss_pred eeEEEEcCCCC--EEEEeeCCCcEEEEeCCCce-----------------------------------eeeee-cCCcCc
Q psy4754 29 ATSVDFSVSGR--LLFAGYNDYTINVWDSLKCC-----------------------------------RVNHL-MGHENR 70 (304)
Q Consensus 29 i~~~~~~~~g~--~l~tg~~dg~v~iwd~~~~~-----------------------------------~~~~~-~~h~~~ 70 (304)
|..+.|.+++. .++....|.+|++|.+.... +.+.+ .+|.--
T Consensus 87 inkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 87 INKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYH 166 (433)
T ss_pred hhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeE
Confidence 57789987654 56666799999999963210 11111 246677
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee---EeEEeccce---eeceeeeEEcCCCC-EEEEEeCCCeEEEecC
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSI---LFGATSVDFSVSGR-LLFAGYNDYTINVWDS 143 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~---~~~~~~~~~---~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~ 143 (304)
|.+|+++.|++.++|+- | +++-+|++.-..+ +.-+++... ...+++..|+|... .|+-.+..|+|++.|+
T Consensus 167 iNSIS~NsD~Et~lSAD-d--LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD-D--LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eeeeeecCccceEeecc-c--eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 89999999999999863 3 5678999864332 222222211 12367888998744 5555778999999998
Q ss_pred Cccc------ccee----------ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee-cCCceEEEeecCc------
Q psy4754 144 LKCC------RVNH----------LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL-RADKEVACYKKDS------ 200 (304)
Q Consensus 144 ~~~~------~~~~----------~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~-~~~~~~~~~~~~~------ 200 (304)
+... .+.+ +.+--.+|..+.|+++|+++++= | .+.+++||+ ...+++.+++.+.
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR--D-yltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR--D-YLTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe--c-cceeEEEeccccCCcceEEeehHhHHHHH
Confidence 8421 1111 11233568899999999999874 2 233579998 4555665554322
Q ss_pred -------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 201 -------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 201 -------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
..+.-..++|+.++.++++|+...-.++|+...+.
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 22334578899999999999999999999965543
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-08 Score=87.09 Aligned_cols=241 Identities=12% Similarity=0.134 Sum_probs=150.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCc---------eEEEE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---------LRCRL 96 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~---------i~~~~ 96 (304)
..+-+-+.|||-|.||+|--.-| |.+|--.+...++.+. | ..|.-+.|||..++|+|=|.--. -++++
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred cceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 34457799999999999987776 8899987777777664 4 56889999999999998663111 13689
Q ss_pred eeeCCCeeEeEEeccc-eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEee
Q psy4754 97 FDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
||+.++...+.+..-. ....-.-..||.|++++|-... ..|.||+..+...+....-....|....|+|.++.+|-=+
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 9999988776654311 1111234679999999887654 6899999776544433222334577788999988777432
Q ss_pred c---CCceEEEEeeecCCceEEEeecCceeeeee--EEEEcCCCCEEEEEeC----------CCcEEEEeCCCceeeEEe
Q psy4754 176 W---DTTLRCRLFDLRADKEVACYKKDSILFGAT--SVDFSVSGRLLFAGYN----------DYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 176 ~---d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~s~~g~~l~sg~~----------d~~i~iwd~~~~~~~~~~ 240 (304)
. +.-..+.+-.+.+.+.+.+-... +|. .+-|-..|.+|+.--. -..+.|+.+.....--..
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlf----nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLF----NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccce----eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 1 11222334445444444332221 222 2335566777765321 123445554432211111
Q ss_pred eccccceEEEEEccCCCEEEEeec---CCeeeecccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSW---DTTLRDEESK 274 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~---D~~i~~~~~~ 274 (304)
..-...|...+|-|.|..++.-+- -.+++++...
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 234578999999999998876542 2467777654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-07 Score=84.08 Aligned_cols=185 Identities=10% Similarity=-0.012 Sum_probs=114.9
Q ss_pred cEEEEEECCCCCe-EEEEeCC-CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eC--CCeEEEecCC
Q psy4754 70 RVSCLQVSPDGTA-FSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YN--DYTINVWDSL 144 (304)
Q Consensus 70 ~V~~l~~s~d~~~-l~sgs~D-~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~--dg~i~iwd~~ 144 (304)
....-.|+|||+. ++..+.+ +.-.++++|+.+++......... ......|+|||+.++.. +. +..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g---~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG---MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC---cEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 6778999999984 6644544 34457889987765544333221 12346799999877653 32 3567777876
Q ss_pred ccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 145 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
++. ...+..+......-.|+|||+.++-.+. .+...+.+.|+.+++......... ....|+|+|++|+.....
T Consensus 266 ~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 266 TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcC
Confidence 554 3334434333344579999987776553 444456778887766533222111 123799999998876543
Q ss_pred ---------CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 224 ---------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 224 ---------~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
..|.+.|+.++.. ..+... .......|+|||+.|+-.+.+
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 2577778776643 334332 233357899999988766543
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-10 Score=105.90 Aligned_cols=208 Identities=17% Similarity=0.223 Sum_probs=149.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEE-EeCCCceEEEEeeeCC-CeeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS-GSWDTTLRCRLFDLRA-DKEV 105 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s-gs~D~~i~~~~wd~~~-~~~~ 105 (304)
..+|++|+.+...|+.|+..|.|++|++.+|....+..+|..+|+-+.=+.||..+++ +++..-+ ..+|+... ....
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl-saLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL-SALWDASSTGGPR 1181 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch-HHHhccccccCcc
Confidence 3699999999999999999999999999999988889999999999999999886554 4444423 35899864 2333
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc----CcccceeEEEEcCCCcEEEEeecCCceE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM----GHENRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
+.+..+ .++.|+.....-+.|.....+.+||+.++.++.++. +....-++..|+|+.+++. +||-
T Consensus 1182 Hsf~ed------~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv-- 1250 (1516)
T KOG1832|consen 1182 HSFDED------KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV-- 1250 (1516)
T ss_pred cccccc------ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCce--
Confidence 444332 467888776666777777889999999988776632 2334457788999988776 3563
Q ss_pred EEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEE
Q psy4754 182 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 259 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 259 (304)
+||.+..+.+..+..-.. -..-.|+|.|..++..++ |||+.+-..+++...- .-..+.|+..|..+
T Consensus 1251 --LWDvR~~~aIh~FD~ft~---~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L--dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1251 --LWDVRIPEAIHRFDQFTD---YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL--DQCAVTFNSTGDVM 1316 (1516)
T ss_pred --eeeeccHHHHhhhhhhee---cccccccCCCceEEeech-----hhhhHHHHHHhcCccc--cceEEEeccCccch
Confidence 899998876665532221 123359999999887763 7998887666544322 22456777766543
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-08 Score=79.29 Aligned_cols=145 Identities=19% Similarity=0.117 Sum_probs=100.8
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCe-eE
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADK-EV 105 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~-~~ 105 (304)
.++.|++.+..++++-++|.+.+=+.... +..+..++|.-+.+..+|+.. -+.+.+||.|+.+ .-||++..+ .+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l--~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL--SCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceE--EEEEecCCccee
Confidence 47889999999999999999985554333 233467889999999999863 4688999999996 569998332 22
Q ss_pred eEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCC--cEEEEeecCC
Q psy4754 106 ACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDG--TAFSSGSWDT 178 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~--~~las~s~d~ 178 (304)
..- ...+..++.++.-+| .+.++++|+.|..|++||.+.. +++.. ..-.+.|+.+..+|.- ..+++|=..|
T Consensus 203 ~~n-~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 203 WHN-SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eec-ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-CccccceEEEEecchhhhHHHHHHHhcC
Confidence 221 111223566665554 5779999999999999998853 34432 2334789999999853 3455554555
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=63.21 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=36.5
Q ss_pred ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 234 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
++++.++.+|.++|++|+|+|++.+|+||+.|++|++|+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357888999999999999999999999999999999996
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.9e-07 Score=73.89 Aligned_cols=223 Identities=19% Similarity=0.129 Sum_probs=134.3
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
+++|..||+.+++++-............+. ..+++..+++++.++.+..||..+|+.+-.... ...+..... .++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccc
Confidence 688999999999987555432111112211 333566777778999999999999987655443 121111111 23455
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEE-eccceee-ceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc--
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACY-KKDSILF-GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-- 158 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~-~~~~~~~-~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-- 158 (304)
++.++.|+. +..+|..+++.+... ....... ..........++.++.+..++.|..+|+.+++.+-.......+
T Consensus 79 v~v~~~~~~--l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 79 VYVGTSDGS--LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEEEETTSE--EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccceee--eEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 666667775 478999899888873 3221100 1112223334788888988999999999988876554433211
Q ss_pred --------eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 159 --------VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 159 --------v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
+..-.+..++ .+..++.++.+ +.+ |+++++.+ +.... ..... ...+++..|+.++.++.+..||
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~-~~~-d~~tg~~~--w~~~~--~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRV-VAV-DLATGEKL--WSKPI--SGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSE-EEE-ETTTTEEE--EEECS--S-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeE-EEE-ECCCCCEE--EEecC--CCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 55555556643 234 98888754 22221 11111 1457788888887999999999
Q ss_pred CCCceeeE
Q psy4754 231 SLKCCRVN 238 (304)
Q Consensus 231 ~~~~~~~~ 238 (304)
..+++.+-
T Consensus 229 ~~tG~~~W 236 (238)
T PF13360_consen 229 LKTGKVVW 236 (238)
T ss_dssp TTTTEEEE
T ss_pred CCCCCEEe
Confidence 99988653
|
... |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.3e-09 Score=92.90 Aligned_cols=234 Identities=14% Similarity=0.181 Sum_probs=155.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-------ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLK-------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
.|.+++--.+.+-+++++.|.+|++|++.. ..+.-+...|+.+|..+-|-.+-++++|+ |+.+ .+||.-
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi--HlWDPF 812 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI--HLWDPF 812 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc--eeeccc
Confidence 356665545666788999999999999742 22444667899999999999988888765 7775 689987
Q ss_pred CCeeEeEEeccceeeceeeeEE--cCCCCEEEEE-eCCCeEEEecCCccccceec-----cCcccceeEEEEcCCCcEEE
Q psy4754 101 ADKEVACYKKDSILFGATSVDF--SVSGRLLFAG-YNDYTINVWDSLKCCRVNHL-----MGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~la 172 (304)
.++.+..............+.. +.+...+.+| +...+|+++|.+...-..++ .+.+.-+.+++..|.|+++|
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA 892 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLA 892 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence 7666543322221111112222 2234444444 77899999998876543333 45556789999999999999
Q ss_pred EeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEE-EeCCCceeeEEeeccccceEEEE
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV-WDSLKCCRVNHLMGHENRVSCLQ 251 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~i-wd~~~~~~~~~~~~h~~~i~~l~ 251 (304)
.+-..+++ .+.|.++++.+..|+.... ....++ .|..+.|+....|.++.+ |....+....+.+....+-.-
T Consensus 893 a~LSnGci--~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahf-- 965 (1034)
T KOG4190|consen 893 AALSNGCI--AILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHF-- 965 (1034)
T ss_pred HHhcCCcE--EEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhh--
Confidence 99999986 5899999988877654432 112222 477788888888999999 977666655554433333221
Q ss_pred EccCCCEEEEeecCCeeeecc
Q psy4754 252 VSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 252 ~sp~g~~lasgs~D~~i~~~~ 272 (304)
+..-|.-|++......++++.
T Consensus 966 lqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 966 LQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhccCceeEEeccCcEEEEEe
Confidence 122355666766666666664
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=84.10 Aligned_cols=256 Identities=18% Similarity=0.210 Sum_probs=150.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc-----eeeeeecCCc------------CcEEEEEECCCCC--eEEEEeC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKC-----CRVNHLMGHE------------NRVSCLQVSPDGT--AFSSGSW 88 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~-----~~~~~~~~h~------------~~V~~l~~s~d~~--~l~sgs~ 88 (304)
-|+++.|...|.+|+||...|.|.+|.-+.. +....+.+|. ..|..+.|-.++. .++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 3899999999999999999999999986532 1223355565 3577788877653 5666677
Q ss_pred CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE--------EeC-CCeEEEecCCccccceeccCcccce
Q psy4754 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA--------GYN-DYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 89 D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--------g~~-dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
|++| ++|.+...+.... ..+....+ +. +|-+.-+.+ .+. |..|.. +.+++. -..|+..|
T Consensus 108 dkti--KlWKiyeknlk~v-a~nnls~~---~~-~~~~g~~~s~~~l~lprls~hd~iiaa----~p~rvy-aNaH~yhi 175 (460)
T COG5170 108 DKTI--KLWKIYEKNLKVV-AENNLSDS---FH-SPMGGPLTSTKELLLPRLSEHDEIIAA----KPCRVY-ANAHPYHI 175 (460)
T ss_pred Ccee--eeeeeecccchhh-hccccccc---cc-cccCCCcCCHHHhhcccccccceEEEe----ccceec-cccceeEe
Confidence 9996 5898865432211 11111000 00 111100000 000 111111 111111 15688889
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCce---EEEeecCce---eeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSI---LFGATSVDFSVSGR-LLFAGYNDYTINVWDSL 232 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~---~~~~~~~~~---~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~ 232 (304)
.++.|..|.+.+.++. | ++|.+|++.-... +..++.+.. ..-+++..|+|... .+.-.++.|.|++-|++
T Consensus 176 NSiS~NsD~et~lSaD-d--LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 176 NSISFNSDKETLLSAD-D--LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeecCchheeeecc-c--eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 9999999999988752 3 4568998754322 222333221 11257888999865 44557789999999876
Q ss_pred Cc------eeeE----------EeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc-------hhheeeccccCC
Q psy4754 233 KC------CRVN----------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY-------MQYLLRSRITKP 289 (304)
Q Consensus 233 ~~------~~~~----------~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~-------~~~~~~~~~~~~ 289 (304)
.. ..+. -+.+-...|..+.|+++|+++++-+. -++++||.+... ++..++.+++-.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 21 1111 11122357889999999999998765 789999875433 333444555444
Q ss_pred ce------eEEEEEec
Q psy4754 290 TQ------GLTVYFQD 299 (304)
Q Consensus 290 ~~------~~~~~~~~ 299 (304)
++ +..+-|++
T Consensus 332 YEnDaifdkFeisfSg 347 (460)
T COG5170 332 YENDAIFDKFEISFSG 347 (460)
T ss_pred hhccceeeeEEEEecC
Confidence 33 45566665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-06 Score=78.83 Aligned_cols=182 Identities=11% Similarity=-0.004 Sum_probs=110.3
Q ss_pred eeEEEEcCCCCE-EEEeeC---CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCe
Q psy4754 29 ATSVDFSVSGRL-LFAGYN---DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 29 i~~~~~~~~g~~-l~tg~~---dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~ 103 (304)
.....|+|||+. ++-.+. +..|.++|+.+++...- ....+.+....|+|||+.|+ +.+.++.-.++++|+..+.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 567899999973 543322 46789999988765432 22445566788999998654 5554555556788876654
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeC-CC--eEEEecCCccccce-eccCcccceeEEEEcCCCcEEEEeecCC-
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYN-DY--TINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDT- 178 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg--~i~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~d~- 178 (304)
... +..... ......|+|||+.++..+. .+ .|.+.|+.+++..+ +..+. . ...|+|||+.++..+...
T Consensus 269 ~~~-LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 269 LTQ-ITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred EEE-cccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEcCCC
Confidence 332 222211 1124579999998777654 33 57777776554322 11222 1 248999999888666542
Q ss_pred ------ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC
Q psy4754 179 ------TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN 222 (304)
Q Consensus 179 ------~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~ 222 (304)
.-.+.+.|+.++.... +.... ......|+|||+.++....
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~~-LT~~~---~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIRR-LTANG---VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred cccCCCCcEEEEEECCCCCeEE-CCCCC---CcCCeEECCCCCEEEEEEc
Confidence 2345677877765432 22221 1235789999998776543
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-07 Score=73.35 Aligned_cols=185 Identities=16% Similarity=0.031 Sum_probs=117.2
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCc--EEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR--VSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~--V~~l~~s~d~ 80 (304)
++..+|.+.++..... +.+....+|+-+.=..+ ..-+..++.|.++++.++.-+..- +..|... +.++++++|+
T Consensus 94 g~fd~~~~~tn~~h~~-~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~ 170 (344)
T KOG4532|consen 94 GQFDLFACNTNDGHLY-QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDP 170 (344)
T ss_pred ceeeeecccCccccee-eecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCCC
Confidence 4688899888765432 22222222222211112 234567889999999998644222 2234443 7789999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeE-EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-----ceeccC
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-----VNHLMG 154 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~~ 154 (304)
+++++.+.-..| ..+.+........ ........+..+..|+.....+|.+..||++.|||++.... -.+...
T Consensus 171 ~~~~~Vgds~~V--f~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 171 SWGSSVGDSRRV--FRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred ceEEEecCCCcc--eEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence 999998877664 5677765443322 12222334456788999999999999999999999875322 123356
Q ss_pred cccceeEEEEcCCCc---EEEEeecCCceEEEEeeecCCceEEEe
Q psy4754 155 HENRVSCLQVSPDGT---AFSSGSWDTTLRCRLFDLRADKEVACY 196 (304)
Q Consensus 155 h~~~v~~v~~sp~~~---~las~s~d~~i~i~~~d~~~~~~~~~~ 196 (304)
|.+.+..+.|+|-|- +|.+-.. -.+.+.|+|+++..+.+
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhf---s~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHF---SRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCc---ceEEEEEcccCceeeEE
Confidence 999999999998553 3444322 22468899888765443
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=92.10 Aligned_cols=262 Identities=16% Similarity=0.168 Sum_probs=164.6
Q ss_pred cccccceeEEEEcCC--CCEEEEeeCCCcEEEEeCCCc--eee-eeecCCcCcEEEEEECCCC-CeEEEEeCCCceEEEE
Q psy4754 23 DSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKC--CRV-NHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRL 96 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~~--~~~-~~~~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~ 96 (304)
+.....|....|+|. ..+-+...+...-.+|++... +.+ -.+-+|...|+.+-|+|.. ..|++++.|-.+ ..
T Consensus 64 h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~v--h~ 141 (1081)
T KOG0309|consen 64 HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYV--HA 141 (1081)
T ss_pred ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccc--ee
Confidence 333334667788764 334333334556678997532 222 2356899999999999865 488999999885 68
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCC-CcEEEEe
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPD-GTAFSSG 174 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~-~~~las~ 174 (304)
||+++........ ..-.-+...+.++.....+++.+..+.|.+||++.+ .++..+.+|...|..++|..- ...+.++
T Consensus 142 wd~rSp~~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~ 220 (1081)
T KOG0309|consen 142 WDMRSPHRPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSS 220 (1081)
T ss_pred eeccCCCcceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhccc
Confidence 9998654322111 000113457888877777777788899999998875 467788899999999998653 3457889
Q ss_pred ecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE--EEEEeCCCcEEEEeCC----------CceeeEEeec
Q psy4754 175 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL--LFAGYNDYTINVWDSL----------KCCRVNHLMG 242 (304)
Q Consensus 175 s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--l~sg~~d~~i~iwd~~----------~~~~~~~~~~ 242 (304)
+.|++++ .||.......... ......++..-.+.|-|+- +.---.+..+.+++.+ ..++++++.|
T Consensus 221 ~~d~tvk--fw~y~kSt~e~~~-~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G 297 (1081)
T KOG0309|consen 221 SNDGTVK--FWDYSKSTTESKR-TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG 297 (1081)
T ss_pred CCCCcee--eecccccccccce-eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence 9999975 6776543211111 1111134455555665442 2212223344444321 3457899999
Q ss_pred cccceEEEEEccCC----------CEEEEeecCCeeeeccccccchhheeeccccCCc
Q psy4754 243 HENRVSCLQVSPDG----------TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPT 290 (304)
Q Consensus 243 h~~~i~~l~~sp~g----------~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~ 290 (304)
|...|...-|-..+ -.|+|=|.|.++|+|-....-.......+..+-.
T Consensus 298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i~~~~~~Dr~k~v~ 355 (1081)
T KOG0309|consen 298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQIQRLCANDRLKGVD 355 (1081)
T ss_pred cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHHHHhhhcccccChh
Confidence 99988766664433 2799999999999997766554444444444333
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-06 Score=71.50 Aligned_cols=227 Identities=13% Similarity=0.028 Sum_probs=138.9
Q ss_pred eEEEEcC-----CCCEEEEeeCCCcEEEEeCCCceee-eeecCCcCcEEEEEECCCC-CeEEEEeCCCceEEEEeeeCCC
Q psy4754 30 TSVDFSV-----SGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 30 ~~~~~~~-----~g~~l~tg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
+.+.|-| ...+||.|+..|...+|.+.+.+.. .....|...|+-+.=..|. -.+.-++.|.++++..-+.+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 4456655 3458999999999999999866432 2233444444322111122 2355678899987655554433
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-c-ce-eccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-R-VN-HLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~-~~-~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+...-.+. ....++.+++++.++++.+....|-.|.+.... . .. ....-++.=.+..|+.....||++++|++
T Consensus 151 ~~~~h~~~----~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~ 226 (344)
T KOG4532|consen 151 KFAVHNQN----LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT 226 (344)
T ss_pred cceeeccc----cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence 32211111 124688999999999999999999999875432 2 22 11222344467789988899999999999
Q ss_pred eEEEEeeecCCce-EEEe--ecCceeeeeeEEEEcCCCC--EEEEEeCCCcEEEEeCCCceeeEEeec-------cc-cc
Q psy4754 180 LRCRLFDLRADKE-VACY--KKDSILFGATSVDFSVSGR--LLFAGYNDYTINVWDSLKCCRVNHLMG-------HE-NR 246 (304)
Q Consensus 180 i~i~~~d~~~~~~-~~~~--~~~~~~~~~~~~~~s~~g~--~l~sg~~d~~i~iwd~~~~~~~~~~~~-------h~-~~ 246 (304)
+ .+||+|.... +... ....+...+..+.|++.|. +|+....-+.+++-|+++......+.- |. +.
T Consensus 227 ~--~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ 304 (344)
T KOG4532|consen 227 C--AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQH 304 (344)
T ss_pred E--EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccc
Confidence 6 6899987543 2211 1112334567888998775 466555567899999887654433321 22 22
Q ss_pred eEEEEEccCCCEEEEe
Q psy4754 247 VSCLQVSPDGTAFSSG 262 (304)
Q Consensus 247 i~~l~~sp~g~~lasg 262 (304)
|..-.|+.++..+-..
T Consensus 305 ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 305 IFGTNFNNENESNDVK 320 (344)
T ss_pred cccccccCCCcccccc
Confidence 5555666555444333
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-06 Score=75.85 Aligned_cols=236 Identities=16% Similarity=0.216 Sum_probs=147.7
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCC--EEEE-----eeCCCcEEEEeCCCceee-----eeecCCcCc
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR--LLFA-----GYNDYTINVWDSLKCCRV-----NHLMGHENR 70 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~l~t-----g~~dg~v~iwd~~~~~~~-----~~~~~h~~~ 70 (304)
.+.|.+|++...+. .....+.-+|+.+.++|.+. .+|+ +|.=..|+||........ ++|. -.+.
T Consensus 145 ~nev~f~~~~~f~~---~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadk 220 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKT---IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADK 220 (566)
T ss_pred cceEEEEecCCccc---eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccce
Confidence 45688999988543 22233455689999998743 4443 456678999997632211 1221 1244
Q ss_pred EEEEEECCCCC-eEEEEe--CCCc-------eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE--EeCCCeE
Q psy4754 71 VSCLQVSPDGT-AFSSGS--WDTT-------LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA--GYNDYTI 138 (304)
Q Consensus 71 V~~l~~s~d~~-~l~sgs--~D~~-------i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--g~~dg~i 138 (304)
| .+.|++-|+ +|+..+ -|++ -.+.+.++........+.+.+ +|.++.|++++..|+. |..-..+
T Consensus 221 v-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G---PVhdv~W~~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 221 V-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG---PVHDVTWSPSGREFAVVYGFMPAKV 296 (566)
T ss_pred e-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC---CceEEEECCCCCEEEEEEecccceE
Confidence 4 478988777 333332 2331 112345555333333333332 4779999999988766 5556789
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCC-ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL 217 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~-~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 217 (304)
.++|++. ..+..+ -+++=+++-|+|.|++++.++-++ ...+-+||+.+.+.+..+.... .+-++|+|||+++
T Consensus 297 tifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 297 TIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYF 369 (566)
T ss_pred EEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEE
Confidence 9999763 344433 335667889999999988877543 2234699999877777665443 4678999999999
Q ss_pred EEEeC------CCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 218 FAGYN------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 218 ~sg~~------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
+++.. |+.++||+.. |..+..-+-. ...+.+.|-|-
T Consensus 370 lTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~-sEL~qv~W~P~ 411 (566)
T KOG2315|consen 370 LTATTAPRLRVDNGIKIWHYT-GSLLHEKMFK-SELLQVEWRPF 411 (566)
T ss_pred EEEeccccEEecCCeEEEEec-Cceeehhhhh-HhHhheeeeec
Confidence 99764 6889999864 4444322111 14556666653
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.7e-08 Score=83.20 Aligned_cols=159 Identities=16% Similarity=0.220 Sum_probs=95.6
Q ss_pred EEEECCCCCeEEEEeCCCceEEEEeeeCCCe----eEeEEeccceeeceeeeEEcCCCCEEEE---EeCCCeEEEecCCc
Q psy4754 73 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADK----EVACYKKDSILFGATSVDFSVSGRLLFA---GYNDYTINVWDSLK 145 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~s---g~~dg~i~iwd~~~ 145 (304)
.+..++++++|+.+-.++.. .++++.... ...++.... ..+.+.|-.+...... .+....+.+|....
T Consensus 67 ~~~~s~~~~llAv~~~~K~~--~~f~~~~~~~~~kl~~~~~v~~---~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQR--AVFDYRENPKGAKLLDVSCVPK---RPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccCCCceEEEEEeCCCce--EEEEEecCCCcceeeeEeeccc---CcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 44556777777777666653 344443222 121111110 1123333333333333 34456666666554
Q ss_pred cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 146 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
.+.....||-.-+..|+++||.++++++-.|..|++ -.....-.+..+..+. ...|..++.-++ ..|++|+.|++
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRv--s~ypa~f~IesfclGH-~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRV--SRYPATFVIESFCLGH-KEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEE--EecCcccchhhhcccc-HhheeeeeeccC-ceeeecCCCCc
Confidence 344456799999999999999999999999998754 4333333333333211 123556665544 55899999999
Q ss_pred EEEEeCCCceeeEEee
Q psy4754 226 INVWDSLKCCRVNHLM 241 (304)
Q Consensus 226 i~iwd~~~~~~~~~~~ 241 (304)
+++||..++..+.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 9999999988876543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-06 Score=85.05 Aligned_cols=233 Identities=14% Similarity=0.069 Sum_probs=137.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEE----eCCCc--eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVW----DSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 101 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iw----d~~~~--~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~ 101 (304)
.|.++.|-++...++.+..+|.|.+. +..+. +.+.. -+..|.+.+||||++.|+-...++++-+ . .++
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~--m-t~~ 150 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLL--M-TRD 150 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEE--E-ecc
Confidence 48889999998888899999999999 54433 23333 3578999999999999888877877622 1 122
Q ss_pred CeeEeEEeccceeec---eeeeEEcCCCCEEEEEeCCCeE-E-EecCCcc-ccceeccCcccceeEEEEcCCCcEEEEee
Q psy4754 102 DKEVACYKKDSILFG---ATSVDFSVSGRLLFAGYNDYTI-N-VWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~---~~~~~~s~~~~~l~sg~~dg~i-~-iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
-..+.....+...++ .-++.|......|= |+..... + .-|.... .....+. +.+.-..++|..||++||+.+
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~-Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFH-GSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccC-cchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 223322221111111 11222322211110 0000000 0 0000000 0001122 334556789999999999887
Q ss_pred c---CC-ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCceeeEEeec----cc
Q psy4754 176 W---DT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHLMG----HE 244 (304)
Q Consensus 176 ~---d~-~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~---d~~i~iwd~~~~~~~~~~~~----h~ 244 (304)
. ++ .-++++|+-+ +....+-... ..--.+++|.|.|++||+.-. ...|.+|. ++|.+...|.- ..
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v--~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPV--DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccC--CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 5 34 3457889754 3322222111 111257899999999999654 34577776 45555555443 35
Q ss_pred cceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 245 NRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 245 ~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..|..|+|++|+..||.--.|. |++|..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 6899999999999999977666 999975
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-06 Score=80.87 Aligned_cols=241 Identities=14% Similarity=0.077 Sum_probs=148.3
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCC---------------C--------ceeee-------------------
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---------------K--------CCRVN------------------- 62 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~---------------~--------~~~~~------------------- 62 (304)
...+|.+++||||+.+|+....++++.+-+-. . |+.-.
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 34579999999999999988888888876620 0 00000
Q ss_pred ------eecCCcCcEEEEEECCCCCeEEEEeC---CC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE
Q psy4754 63 ------HLMGHENRVSCLQVSPDGTAFSSGSW---DT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 132 (304)
Q Consensus 63 ------~~~~h~~~V~~l~~s~d~~~l~sgs~---D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 132 (304)
.+. +++.-..|+|..||++++..+. ++ .-++|+|+-. +.....-+.... --.+++|.|.|.++|+.
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g--Le~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG--LEGALSWRPSGNLIASS 274 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC--ccCCccCCCCCCEEEEE
Confidence 111 3345567999999999998875 33 3346788754 322221111111 12478899999999886
Q ss_pred eC---CCeEEEecCCccccceec----cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEE--eecCceee
Q psy4754 133 YN---DYTINVWDSLKCCRVNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC--YKKDSILF 203 (304)
Q Consensus 133 ~~---dg~i~iwd~~~~~~~~~~----~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~--~~~~~~~~ 203 (304)
-. ...|.+|+- ++-+..+| ......|..+.|++|+..||..-.|. | .+|...++..-.+ +.-... .
T Consensus 275 q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-v--qLWt~~NYHWYLKqei~~~~~-~ 349 (928)
T PF04762_consen 275 QRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-V--QLWTRSNYHWYLKQEIRFSSS-E 349 (928)
T ss_pred EEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-c--eEEEeeCCEEEEEEEEEccCC-C
Confidence 43 567778873 33332222 13456799999999999999977666 3 6898776643211 111110 1
Q ss_pred eeeEEEEcCCCCE-EEEEeCCCcEEEEe----CCC----------------cee----------------eEEeeccccc
Q psy4754 204 GATSVDFSVSGRL-LFAGYNDYTINVWD----SLK----------------CCR----------------VNHLMGHENR 246 (304)
Q Consensus 204 ~~~~~~~s~~g~~-l~sg~~d~~i~iwd----~~~----------------~~~----------------~~~~~~h~~~ 246 (304)
.+..+.|+|...+ |.....++.+..++ ... |.. ..++ .-..+
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~ 428 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSP 428 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCC
Confidence 1234778876543 44555545554432 110 000 0111 12468
Q ss_pred eEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 247 VSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 247 i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
|.+++|++++..+|.-..|++|.+|.+..
T Consensus 429 v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 429 VNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred cEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 99999999998899999999999887543
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=80.80 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=99.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-ee--eecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-VN--HLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~-~~--~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
.....+++++++|.+..+....+++...... .+ ....-...-+++.|-.+.. .++.-..+....+.+|....+...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 3456778899999998888877777543322 11 1111111122333333222 222222222222234444332222
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee-ccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
..+ .++-.+..++++||+++++++..|..|++-.......+.. +.||+.-|..++.-+ ++.++++|.|+++ ++
T Consensus 146 ~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tl--r~ 219 (390)
T KOG3914|consen 146 PIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTL--RL 219 (390)
T ss_pred hhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcE--EE
Confidence 111 1112256899999999999999999999976554444444 368999999999875 4569999999996 79
Q ss_pred eeecCCceEEEeec
Q psy4754 185 FDLRADKEVACYKK 198 (304)
Q Consensus 185 ~d~~~~~~~~~~~~ 198 (304)
||+++++.+.++..
T Consensus 220 Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 220 WDITSGKLLDTCDL 233 (390)
T ss_pred EecccCCcccccch
Confidence 99999988766543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-06 Score=75.58 Aligned_cols=248 Identities=14% Similarity=0.015 Sum_probs=141.6
Q ss_pred CceeEEeeccccceEeeeeccccccceeE-EEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcE-----EEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATS-VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV-----SCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~-~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V-----~~l~~ 76 (304)
++++.-+|..+++++-..... . .+.+ ... .+..++.+..+|.+..||..+|+.+-.+......+ .+...
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~--~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLS--S-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred CCEEEEEECCCCcEeeeeccC--c-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence 567788888888775332211 1 1111 111 24456677789999999999887654433222111 01111
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecccee--------ece-eeeEEcCCCCEEEEEeCCCeEEEecCCccc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL--------FGA-TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~--------~~~-~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 147 (304)
. +..++.+..++.+ ..+|..+++.+......... ..+ ....+ .+..++.++.+|.+..||..+++
T Consensus 189 ~--~~~v~~~~~~g~v--~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 189 A--DGGVLVGFAGGKL--VALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred E--CCEEEEECCCCEE--EEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc
Confidence 1 2466777777764 56888777766543211000 000 01111 35678888889999999998776
Q ss_pred cceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEE
Q psy4754 148 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 227 (304)
Q Consensus 148 ~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~ 227 (304)
.+-... . ........ ++..++.++.|+.+ ..+|..+++.+-....... ....+.. ..+..+++++.+|.+.
T Consensus 263 ~~W~~~-~-~~~~~p~~--~~~~vyv~~~~G~l--~~~d~~tG~~~W~~~~~~~-~~~ssp~--i~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 263 VLWKRD-A-SSYQGPAV--DDNRLYVTDADGVV--VALDRRSGSELWKNDELKY-RQLTAPA--VVGGYLVVGDFEGYLH 333 (377)
T ss_pred EEEeec-c-CCccCceE--eCCEEEEECCCCeE--EEEECCCCcEEEccccccC-CccccCE--EECCEEEEEeCCCEEE
Confidence 543322 1 11111222 34567777778875 5788887765432211000 0011111 1467888899999999
Q ss_pred EEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeec
Q psy4754 228 VWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 228 iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~ 271 (304)
++|..+++.+.++..+...+..--...+ ..|..++.|+.|..+
T Consensus 334 ~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 334 WLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 9999999999888766654433322233 357788889887644
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-06 Score=67.70 Aligned_cols=228 Identities=13% Similarity=0.067 Sum_probs=127.2
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeee---cCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 32 VDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHL---MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 32 ~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~---~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
++.+.+|++||.- +|..|.|-...+. ..+... +.....-+.++||||+..|+.+...|+| +++|+.. ..+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i--~vfdl~g-~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTI--RVFDLMG-SELF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeE--EEEeccc-ceeE
Confidence 4567888888655 7778888876542 111221 2233456789999999999999888885 7889874 3333
Q ss_pred EEeccce-----eeceeeeEEcCC------CCEEEEEeCCCeEEEecCCc--cc---cce--ecc-CcccceeEEEEcCC
Q psy4754 107 CYKKDSI-----LFGATSVDFSVS------GRLLFAGYNDYTINVWDSLK--CC---RVN--HLM-GHENRVSCLQVSPD 167 (304)
Q Consensus 107 ~~~~~~~-----~~~~~~~~~s~~------~~~l~sg~~dg~i~iwd~~~--~~---~~~--~~~-~h~~~v~~v~~sp~ 167 (304)
.++.... ..++..+.|-.- ...|+....+|.++-|-+.. .+ ... .+. .++..|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 3332110 112334444321 22566667788888776421 12 111 222 24678999999999
Q ss_pred CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC------cEEEEeCCCceeeEEee
Q psy4754 168 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY------TINVWDSLKCCRVNHLM 241 (304)
Q Consensus 168 ~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~------~i~iwd~~~~~~~~~~~ 241 (304)
.+.|+.||....-. ....... .-+..++. +.-+|.-+.+. ..+|. +-.+|.+.+........
T Consensus 159 h~LLlVgG~~~~~~-~~s~a~~-~GLtaWRi---------L~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 159 HRLLLVGGCEQNQD-GMSKASS-CGLTAWRI---------LSDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CCEEEEeccCCCCC-ccccccc-cCceEEEE---------cCCCCcEEEcc-ccCccccccccccceeeccceeeeeccc
Confidence 99888887544310 0110000 00111110 00112222211 11111 11234333221111112
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.-...|..+.+||||+.||+...+|.|-+|+++.
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 2457899999999999999999999999998744
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-06 Score=75.26 Aligned_cols=256 Identities=13% Similarity=0.089 Sum_probs=147.9
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
++.+.-+|..+++++=....... -..... .++..++.++.+|.+..+|..+|+.+-..... +.+.+.... .+..
T Consensus 74 ~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~ 147 (377)
T TIGR03300 74 DGTVVALDAETGKRLWRVDLDER--LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGL 147 (377)
T ss_pred CCeEEEEEccCCcEeeeecCCCC--cccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCE
Confidence 46788889888887533332221 111222 24667778889999999999988766443321 222221111 2445
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeec---eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC-cc--
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG---ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HE-- 156 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~-- 156 (304)
++.++.|+.+ ..+|..+++.+...+....... ..+..+. +..++.+..++.+..+|..+++.+-+... ..
T Consensus 148 v~v~~~~g~l--~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g 223 (377)
T TIGR03300 148 VVVRTNDGRL--TALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG 223 (377)
T ss_pred EEEECCCCeE--EEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence 6666778775 6789888887776544321110 0111111 34677888889999999887754422110 00
Q ss_pred ----cceeEEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 157 ----NRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 157 ----~~v~~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.....+.-+| .+..+..++.++.+ ..+|.++++.+-...... ... ....+..+..++.++.+..+|
T Consensus 224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l--~a~d~~tG~~~W~~~~~~----~~~--p~~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 224 RTELERLVDVDGDPVVDGGQVYAVSYQGRV--AALDLRSGRVLWKRDASS----YQG--PAVDDNRLYVTDADGVVVALD 295 (377)
T ss_pred CCchhhhhccCCccEEECCEEEEEEcCCEE--EEEECCCCcEEEeeccCC----ccC--ceEeCCEEEEECCCCeEEEEE
Confidence 0000111111 23466667778875 578988876543322111 111 223467777788899999999
Q ss_pred CCCceeeEEeeccc-cceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 231 SLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 231 ~~~~~~~~~~~~h~-~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
..+++.+-...... ....+... .+..|..++.|+.|..++..++-.
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 99888775442211 12222222 466888999999999998766543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-06 Score=73.89 Aligned_cols=212 Identities=17% Similarity=0.146 Sum_probs=136.6
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCceeeeeec-------CCc-----CcEEEEE-ECC-CCCeEEEEeCCCceEEEEeeeC
Q psy4754 35 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-------GHE-----NRVSCLQ-VSP-DGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-------~h~-----~~V~~l~-~s~-d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
+.||+.++ -+.-|.|.+||+.+-.. ..+. ... .+..-+. |++ +|++++..|.........|+
T Consensus 275 nsDGkrIv-Fq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~-- 350 (668)
T COG4946 275 NSDGKRIV-FQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWD-- 350 (668)
T ss_pred CCCCcEEE-EecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCC--
Confidence 44676553 23567799999875321 1111 001 1111121 433 68888888876654333343
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC-eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+-.+...+.. .+.-..+..+++-++.|..|| .+-++|..+++ ...+...-+.|.+|..+|+|+.++.+.....
T Consensus 351 -~~~iqv~~~~----~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 351 -GYSIQVGKKG----GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred -CeeEEcCCCC----ceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence 3333322221 245566777778889999998 99999987654 3445566678999999999998888765544
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC----cEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY----TINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~----~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
++++|+.++.....-+.. ...++.++|+|+++++|-+-.+| .|+++|+..++... .....+.-.+=+|.||
T Consensus 425 --l~vididngnv~~idkS~--~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d 499 (668)
T COG4946 425 --LWVIDIDNGNVRLIDKSE--YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPD 499 (668)
T ss_pred --EEEEEecCCCeeEecccc--cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCC
Confidence 588899988754332222 23468999999999999876654 69999988765433 3334445566789999
Q ss_pred CCEEEE
Q psy4754 256 GTAFSS 261 (304)
Q Consensus 256 g~~las 261 (304)
|++|--
T Consensus 500 ~ryLYf 505 (668)
T COG4946 500 GRYLYF 505 (668)
T ss_pred CcEEEE
Confidence 987654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6e-06 Score=72.23 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=101.5
Q ss_pred ceeEEEEcCCCCEEEEeeCCC-cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
+|.-..+..+++-++.|..|| .+-|+|..+++.- .+...-+.|.+++.+++|+.++.+..... +++.|+.+++...
T Consensus 361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~e--l~vididngnv~~ 437 (668)
T COG4946 361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFE--LWVIDIDNGNVRL 437 (668)
T ss_pred ceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceE--EEEEEecCCCeeE
Confidence 377778887877888999999 9999999887643 35556788999999999999888765555 5889998876543
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccce--eccCcccceeEEEEcCCCcEEEEee
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRVN--HLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
.-+.+ ..-++..+|||+++++|-+..+ ..|+++|+..++... +..+|. .+=+|.||++.+.--|
T Consensus 438 idkS~--~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D---fsPaFD~d~ryLYfLs 507 (668)
T COG4946 438 IDKSE--YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD---FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecccc--cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc---cCcccCCCCcEEEEEe
Confidence 32222 2236788999999999987544 578999988765432 223333 2347888998765443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-06 Score=75.78 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=155.1
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCc---------------EEEEeCCCceeeeeecCCcCc
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT---------------INVWDSLKCCRVNHLMGHENR 70 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~---------------v~iwd~~~~~~~~~~~~h~~~ 70 (304)
|.+|+-.....+..+. ...|.-+.|+|++++|.|=+..+. +.+||..++..+..+.+...+
T Consensus 55 V~~~~g~~~~~l~~~~----~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~ 130 (561)
T COG5354 55 VECWGGPSKAKLVRFR----HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP 130 (561)
T ss_pred eEEccccchhheeeee----cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc
Confidence 6777766665443333 234788999999999999877655 999999999888887765554
Q ss_pred --EE-EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-eeeceeeeEEcCCCC--EEEE-----EeCCCeEE
Q psy4754 71 --VS-CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGR--LLFA-----GYNDYTIN 139 (304)
Q Consensus 71 --V~-~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~--~l~s-----g~~dg~i~ 139 (304)
.+ -+.|+.+.++++--..+ . +.+.++ +.+... ...+. ...++....++|.++ .|+. ....++++
T Consensus 131 ~~~Wp~~k~s~~D~y~ARvv~~-s--l~i~e~-t~n~~~-~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~ 205 (561)
T COG5354 131 YLGWPVLKFSIDDKYVARVVGS-S--LYIHEI-TDNIEE-HPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVR 205 (561)
T ss_pred ccccceeeeeecchhhhhhccC-e--EEEEec-CCcccc-CchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEE
Confidence 44 67899888876543322 2 246665 222111 11110 113455666777533 2222 46788999
Q ss_pred EecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc---------eEEEEeeecCCceEEEeecCceeeeeeEEEE
Q psy4754 140 VWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---------LRCRLFDLRADKEVACYKKDSILFGATSVDF 210 (304)
Q Consensus 140 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---------i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (304)
+|.+.....+.+..-.+..=..+.|.+.|+.+..--...+ -.+.+++++. ..+.+-. ....+|...+|
T Consensus 206 i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~--~~~~pVhdf~W 282 (561)
T COG5354 206 ILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEK--DLKDPVHDFTW 282 (561)
T ss_pred EEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceec--cccccceeeee
Confidence 9988765554432222222345667787776443211110 0123444442 1122211 22246788999
Q ss_pred cCCCCEEEE--EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC---Ceeeeccccccc
Q psy4754 211 SVSGRLLFA--GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRDEESKNRY 277 (304)
Q Consensus 211 s~~g~~l~s--g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D---~~i~~~~~~~~~ 277 (304)
.|.++.+++ |-.+-.+.++|+... +. +....+.=+-+.|||.+++++.++-| +.|-+|+....+
T Consensus 283 ~p~S~~F~vi~g~~pa~~s~~~lr~N--l~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 283 EPLSSRFAVISGYMPASVSVFDLRGN--LR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred cccCCceeEEecccccceeecccccc--eE-EecCCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence 999987666 456778899998765 22 33455555678899999999988766 457777765554
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=84.73 Aligned_cols=230 Identities=11% Similarity=0.030 Sum_probs=146.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---------------eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---------------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---------------~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~ 93 (304)
..|++|.....++|+|+.||.+++-.+.+.. .-+++.||++.|..+.|+.+.+.|-|+-.+|.|
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI- 95 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI- 95 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE-
Confidence 6899999999999999999999999875421 124578999999999999988888888788875
Q ss_pred EEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-eeccCcccceeEEEEcCCCcEEE
Q psy4754 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 94 ~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~la 172 (304)
.+|-+-.++-......+...-.+.++.|..+|..++....||.|.+=.+..+... ..+.+. ....+.|+||.+.+.
T Consensus 96 -iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 96 -IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQAL 172 (1189)
T ss_pred -EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHH
Confidence 5787754432211111111112467889999999999999998877443322110 112221 234678999987766
Q ss_pred EeecCCceEEEEeeecCCc-------eEEEeecCce--eeeeeEEEE--------cCCCCEEEEEeCCCcEEEEeCCC-c
Q psy4754 173 SGSWDTTLRCRLFDLRADK-------EVACYKKDSI--LFGATSVDF--------SVSGRLLFAGYNDYTINVWDSLK-C 234 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~-------~~~~~~~~~~--~~~~~~~~~--------s~~g~~l~sg~~d~~i~iwd~~~-~ 234 (304)
.+-..+.. .++|-...- +.....+... ...+-.+.| -|+-+.|+.+...|.+.|-...+ .
T Consensus 173 f~~ange~--hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 173 FKKANGET--HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred hhhcCCcE--EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 66556654 477754321 1000000000 000112222 36888999999999888764322 2
Q ss_pred eeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 235 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
.++-.-.+ -.|....|+++|..||.++.|.
T Consensus 251 ~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 251 EPVVVDTG--MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCeEEecc--cEeecceecCCCcEEEEccCcc
Confidence 23322222 5788899999999999988653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-05 Score=64.51 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=106.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-------CcCcEEEEEECCCC------CeEEEEeCCCceEEEE
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-------HENRVSCLQVSPDG------TAFSSGSWDTTLRCRL 96 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-------h~~~V~~l~~s~d~------~~l~sgs~D~~i~~~~ 96 (304)
.-++|+||+.+||.+.+.|+|++||+...+ +..+.. -...|..+.|.+-. ..|+.-..+|.++-.+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 569999999999999999999999986432 222221 13566677675532 1344445566554333
Q ss_pred eeeC---CCeeEeEEeccce-eeceeeeEEcCCCCEEEEEeCCCe-----------EEEecCCccccceeccCcccceeE
Q psy4754 97 FDLR---ADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYNDYT-----------INVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 97 wd~~---~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~sg~~dg~-----------i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
..+. ..+..+.+..... ..++.++.++|..+.|+.|+.... +..|.+.. +.+....
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~--------~~Pyyk~- 196 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS--------DSPYYKQ- 196 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC--------CCCcEEE-
Confidence 3322 1223333332211 236888999999888877653211 12222111 1111111
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
+. +.+...-...... .++.+-+.+ +...+.. ....+..+..||||++||+.+..|.|.+|++........+.
T Consensus 197 v~-~~~~~~~~~~~~~-----~~~~~~~~~-~fs~~~~-~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 197 VT-SSEDDITASSKRR-----GLLRIPSFK-FFSRQGQ-EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cc-ccCcccccccccc-----ceeecccee-eeecccc-CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 11 1111111110001 122222111 1111111 11246788999999999999999999999998876666655
Q ss_pred cccc
Q psy4754 242 GHEN 245 (304)
Q Consensus 242 ~h~~ 245 (304)
-++.
T Consensus 269 ~~eq 272 (282)
T PF15492_consen 269 QDEQ 272 (282)
T ss_pred hhhC
Confidence 4443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.3e-08 Score=56.50 Aligned_cols=39 Identities=36% Similarity=0.583 Sum_probs=35.3
Q ss_pred ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee
Q psy4754 58 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 58 ~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd 98 (304)
+++++.+.+|.++|.+++|+|++++|+||+.|+++ ++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i--~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTI--RVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEE--EEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEE--EEEC
Confidence 35678899999999999999999999999999996 6786
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.1e-05 Score=63.30 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=136.9
Q ss_pred eEEEEcCC-CCEEEEeeCCCc-EEEEeCCCceeeeeecCCcCcEE--EEEECCCCCeEEEEeCC---CceEEEEeeeC-C
Q psy4754 30 TSVDFSVS-GRLLFAGYNDYT-INVWDSLKCCRVNHLMGHENRVS--CLQVSPDGTAFSSGSWD---TTLRCRLFDLR-A 101 (304)
Q Consensus 30 ~~~~~~~~-g~~l~tg~~dg~-v~iwd~~~~~~~~~~~~h~~~V~--~l~~s~d~~~l~sgs~D---~~i~~~~wd~~-~ 101 (304)
..++.+|. ...++.+-.-|+ ..+||..+++....+....+.-. .-.|++||++|++.-.| +.-+|.+||.. .
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 34667774 445555555544 46788877766544432222111 25799999999987543 24456899998 4
Q ss_pred CeeEeEEeccceeeceeeeEEcCCCCEEEEEe------------------CCCeEEEecCCcccccee--c--cCcccce
Q psy4754 102 DKEVACYKKDSILFGATSVDFSVSGRLLFAGY------------------NDYTINVWDSLKCCRVNH--L--MGHENRV 159 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~------------------~dg~i~iwd~~~~~~~~~--~--~~h~~~v 159 (304)
-+.+.++.... .+...+.+.||++.|+.+. .+-.+.+-|..+++.+.+ + .-|+.+|
T Consensus 88 ~~ri~E~~s~G--IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 88 YRRIGEFPSHG--IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred cEEEeEecCCC--cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 55555555433 2446677889997777762 112222334445554444 3 3377889
Q ss_pred eEEEEcCCCcEEEEeecCCce-----EEEEeeecCCceEEEeecC-----ceeeeeeEEEEcCCCCEEEEEe-CCCcEEE
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTL-----RCRLFDLRADKEVACYKKD-----SILFGATSVDFSVSGRLLFAGY-NDYTINV 228 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i-----~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~l~sg~-~d~~i~i 228 (304)
..+++.++|..+...-..+.- -+-++ +.++.+..+... .....+-++++++++.++++.+ ..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~--~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALH--RRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEE--cCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 999999998655544333320 01122 222222222111 1113467899999999886655 4567999
Q ss_pred EeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
||..++..+.... -..+..|+-.+++ +++|.+....+++
T Consensus 244 ~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 244 WDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred EECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCccEEEc
Confidence 9999988776543 2455666666666 6666665554443
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=82.18 Aligned_cols=203 Identities=18% Similarity=0.093 Sum_probs=136.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCC---ceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLK---CCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE 104 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~---~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~ 104 (304)
|+-+.- ...+++.+++.||.++.|-... -+.+..+..|...|.+++.+.|+.++.|.+. |..+ +++|+.+-..
T Consensus 12 i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~--KvfDvEn~Dm 88 (558)
T KOG0882|consen 12 ITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSV--KVFDVENFDM 88 (558)
T ss_pred eeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccce--eEEEeeccch
Confidence 444443 3457899999999999999754 2567788899999999999999999999887 9986 5777765444
Q ss_pred EeEEeccceeeceeeeEEcCCC---CEEEEEeCCCeEEEecCCcc--ccceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 105 VACYKKDSILFGATSVDFSVSG---RLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~---~~l~sg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+..++... ..+...+..++.. ...++...++.+.++|-... +......-|..+|..+.+.|-+..+.+.-..+-
T Consensus 89 inmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 89 INMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred hhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence 43333221 1122233333321 23334456899999995432 223334569999999999999988888766666
Q ss_pred eEEEEeeecC------CceEEEeecC-------ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 180 LRCRLFDLRA------DKEVACYKKD-------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 180 i~i~~~d~~~------~~~~~~~~~~-------~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
| .-|.... .+....++.+ .......++.|+|+|..+.+-..|.+|+++...++..+
T Consensus 168 V--EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 168 V--EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred e--EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 4 5787652 1111111111 11123578999999999999889999999987765443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.9e-05 Score=64.27 Aligned_cols=207 Identities=16% Similarity=0.152 Sum_probs=122.7
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC-----CCcEEEEeCC-CceeeeeecCCcCcEEEEEECCC
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-----DYTINVWDSL-KCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~-----dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
.-+||..+++....+......|-----.|++||++|+|.-. .|.|-|||.. +.+.+..+..|.-.--.+.+.||
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD 109 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD 109 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC
Confidence 45789999877654443322222334789999999988744 5899999998 56667666655433345778999
Q ss_pred CCeEEEEe------------------CCCceEEEEeeeCCCeeEeEEec--cceeeceeeeEEcCCCCEEEEEeCCCe--
Q psy4754 80 GTAFSSGS------------------WDTTLRCRLFDLRADKEVACYKK--DSILFGATSVDFSVSGRLLFAGYNDYT-- 137 (304)
Q Consensus 80 ~~~l~sgs------------------~D~~i~~~~wd~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~sg~~dg~-- 137 (304)
|+.|+.+- ++.++ -+-|..+++.+..... +....++.-+++.++|..++..-..|.
T Consensus 110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL--~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 110 GETLVVANGGIETHPDSGRAKLNLDTMQPSL--VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred CCEEEEEcCCCccCcccCceecChhhcCCce--EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 97666542 11121 1233344444443222 222235666777777765554322221
Q ss_pred -----EEEecCCccccce-------eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeee
Q psy4754 138 -----INVWDSLKCCRVN-------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 205 (304)
Q Consensus 138 -----i~iwd~~~~~~~~-------~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~ 205 (304)
|-+++.. +.+. ....-..++-+|++++++..++..|--+.. +.+||..+++.+...... .+
T Consensus 188 ~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~-~~~~d~~tg~~~~~~~l~----D~ 260 (305)
T PF07433_consen 188 DAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR-VAVWDAATGRLLGSVPLP----DA 260 (305)
T ss_pred ccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE-EEEEECCCCCEeeccccC----ce
Confidence 2222211 1111 112344689999999999888776665544 469999998876554432 35
Q ss_pred eEEEEcCCCCEEEEEeC
Q psy4754 206 TSVDFSVSGRLLFAGYN 222 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~ 222 (304)
..++..+++ ++++.+.
T Consensus 261 cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 261 CGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred eeeeecCCc-eEEeCCC
Confidence 677777777 6666543
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=86.97 Aligned_cols=200 Identities=17% Similarity=0.249 Sum_probs=134.6
Q ss_pred cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC-eeEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCC
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~-~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~ 144 (304)
.+++..++++|-|+-++.++.-+. .+.|+... ++.+.+.. .....+..+.|++ ...+-+.........+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl---~i~dld~p~~ppr~l~h-~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL---YIIDLDDPFTPPRWLHH-ITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe---EEEeccCCCCCceeeec-cCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 467888899999988888776554 35565432 22222111 1111122334444 33344444455566788865
Q ss_pred ccc--cce-eccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEE
Q psy4754 145 KCC--RVN-HLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 145 ~~~--~~~-~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
... .+. -+-+|...|+.+.|.|+. ..+|+|+.|..+ ..||+++... +..+..- ......+.|+.....+.+
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~v--h~wd~rSp~~p~ys~~~w--~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYV--HAWDMRSPHRPFYSTSSW--RSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccc--eeeeccCCCcceeeeecc--cccCceeeecccCcchhh
Confidence 432 222 245899999999999876 478999999996 4899988643 3222211 123467888877776667
Q ss_pred EeCCCcEEEEeCCCc-eeeEEeeccccceEEEEEcc-CCCEEEEeecCCeeeeccccc
Q psy4754 220 GYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 220 g~~d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~~~ 275 (304)
.+..+.|++||...+ .++..+++|...|+.++|.. .-..+.+.+.|++++.|++.+
T Consensus 176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 777889999998754 56888999999999999976 346788999999999998855
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=69.98 Aligned_cols=145 Identities=20% Similarity=0.255 Sum_probs=88.2
Q ss_pred CCCEEEEeeCCCcEEEEeCCCcee-eeeec-CCcCcEEEEEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEE
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCR-VNHLM-GHENRVSCLQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~-~~~~~-~h~~~V~~l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~ 108 (304)
-+.-+++++.||.+-+.+...--. .+.+. -|.+.. +.+.-..++.+.++.. |.. ..|+++..+....-
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~---~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNF---YANTLDPIKTLIPS 175 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccce---eeeccccccccccc
Confidence 345688999999999999765211 11111 122221 1222233555665542 211 23444332222111
Q ss_pred eccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCcccc-ceeccCcccceeEEEEcC-CCcEEEEeecCCceEEEEe
Q psy4754 109 KKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~ 185 (304)
++ ...++++++-+|..+ .++.|+.||.+-+||++.... ...+..|+.+++.+-|+| ++..+.+++.||.+ +.|
T Consensus 176 ~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl--w~w 251 (319)
T KOG4714|consen 176 KK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL--WHW 251 (319)
T ss_pred cc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE--EEE
Confidence 11 122355666676544 566688899999999987643 334678999999999998 56889999999995 688
Q ss_pred eecC
Q psy4754 186 DLRA 189 (304)
Q Consensus 186 d~~~ 189 (304)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 8654
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.3e-06 Score=78.12 Aligned_cols=182 Identities=12% Similarity=0.117 Sum_probs=123.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.++|++++ +.+++-|..+|.|++++.... . ++...|+.. ..+|++++|||.||++ .+-.+.+.+....
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv--~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKV--VIGSLFTDDEITQ 108 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcE--EEeeccCCcccee
Confidence 36777776 678999999999999998643 3 445556554 5679999999999986 4566665555544
Q ss_pred EeccceeeceeeeEEcCC-----CCEEEEEeCCCeEEEecCC--ccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 108 YKKDSILFGATSVDFSVS-----GRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~-----~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+..+. .+.+++++|+ .+++++|+..| +.++.-. .......+..-.++|.++.|. |+++|=++.+|.
T Consensus 109 ~df~r---piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv- 181 (846)
T KOG2066|consen 109 YDFKR---PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV- 181 (846)
T ss_pred EecCC---cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc-
Confidence 43322 3568889987 66899999888 7777522 111111234556889999996 669999988884
Q ss_pred EEEEeeecCCceEEEeecCcee----eeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 181 RCRLFDLRADKEVACYKKDSIL----FGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
++||....+.+...+..... .....+.|.++. .|+.|..| +|+|..+.
T Consensus 182 --~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 182 --KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred --EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 79999888777665433211 112345566555 45566655 67777655
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-05 Score=62.88 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=128.7
Q ss_pred CCCcEEEEeCCCceeeeeecC-C-cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEc
Q psy4754 46 NDYTINVWDSLKCCRVNHLMG-H-ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123 (304)
Q Consensus 46 ~dg~v~iwd~~~~~~~~~~~~-h-~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s 123 (304)
.+|+|..||+.+|+.+-.... . .....+.. .++++.++.++.++.+ ..||..+++.+............ ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~l--~~~d~~tG~~~W~~~~~~~~~~~----~~ 73 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPDGGRVYVASGDGNL--YALDAKTGKVLWRFDLPGPISGA----PV 73 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEETTEEEEEETTSEE--EEEETTTSEEEEEEECSSCGGSG----EE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceE-EEeCCEEEEEcCCCEE--EEEECCCCCEEEEeeccccccce----ee
Confidence 368899999988876654432 1 12222112 2346677777778875 67999999988877653321111 12
Q ss_pred CCCCEEEEEeCCCeEEEecCCccccceec-cCcc---cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC
Q psy4754 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHE---NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199 (304)
Q Consensus 124 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~---~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~ 199 (304)
..+..++.+..++.+..+|..+++.+-+. .... ..........++..++.+..++.+ ..+|+++++.+-.+...
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL--VALDPKTGKLLWKYPVG 151 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE--EEEETTTTEEEEEEESS
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcE--EEEecCCCcEEEEeecC
Confidence 33556777778889999998888766552 2211 011112222236677777767775 58898888876555442
Q ss_pred ceee--------eeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 200 SILF--------GATSVDFSVSGRLLFAGYNDYT-INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 200 ~~~~--------~~~~~~~s~~g~~l~sg~~d~~-i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
.... ....-....++ .+..+..++. +.+ |..+++.+-... ...+..+ ..+++..|+.++.|+.|..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEE
T ss_pred CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEE
Confidence 2110 01122223345 6566666665 555 999998663222 2333332 3566777777779999999
Q ss_pred ccccccc
Q psy4754 271 EESKNRY 277 (304)
Q Consensus 271 ~~~~~~~ 277 (304)
+|+..+.
T Consensus 227 ~d~~tG~ 233 (238)
T PF13360_consen 227 LDLKTGK 233 (238)
T ss_dssp EETTTTE
T ss_pred EECCCCC
Confidence 9987654
|
... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=75.26 Aligned_cols=235 Identities=17% Similarity=0.074 Sum_probs=145.7
Q ss_pred CCceeEEeeccccceEeeeeccccccc--eeEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeeeecCCcCcEEE-EEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFG--ATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHENRVSC-LQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~--i~~~~~~~~g~~l~tg~~-dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s 77 (304)
.|++++.|-...-+-. .+-++.+.|. |.+++.+-+|.++.|.+. |..+|++|++....+..++.-.-+=.+ +.-+
T Consensus 28 lDGh~KFWkKs~isGv-EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s 106 (558)
T KOG0882|consen 28 LDGHKKFWKKSRISGV-EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS 106 (558)
T ss_pred cchhhhhcCCCCccce-eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecC
Confidence 4678888876652111 1223333333 778888889999999888 999999998876554433321111111 1112
Q ss_pred C-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-cccc------
Q psy4754 78 P-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRV------ 149 (304)
Q Consensus 78 ~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~------ 149 (304)
+ |..-+++.+.-.+.++.++|-....+...+.+.-+...+..+.+.+.+..+++....|.|..|.... .+..
T Consensus 107 kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~ 186 (558)
T KOG0882|consen 107 KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF 186 (558)
T ss_pred CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccc
Confidence 2 2223344343233335678876655444443332333567888999999999999999999998662 1111
Q ss_pred --------eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce--------------------
Q psy4754 150 --------NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-------------------- 201 (304)
Q Consensus 150 --------~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-------------------- 201 (304)
..+..-+....++.|+|++..+++-+.|..| +++++++++.++.+.....
T Consensus 187 ~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV--R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR 264 (558)
T KOG0882|consen 187 ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV--RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR 264 (558)
T ss_pred cccccchhhcccccccCccceEEccccCcccccCcccEE--EEEEeccchhhhhhhccchhhhhccccccccceeehhhh
Confidence 1122334567899999999999999888775 6788877765443321100
Q ss_pred -----------eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 202 -----------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 202 -----------~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
...-+.+.|...|++|+-|+-- -|++.++.+++.++.+
T Consensus 265 maverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 265 MAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRIL 313 (558)
T ss_pred hhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEe
Confidence 0112456789999999988653 4888888887666544
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-06 Score=80.37 Aligned_cols=183 Identities=18% Similarity=0.220 Sum_probs=125.0
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEee
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
.+|+++.+..+....... + ...+..+++++.+|...|+|.+-|.++.+.+.++..|++.|..+.. +|+.+++||
T Consensus 161 ~~Dl~~~~e~r~~~v~a~--~--v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG 234 (1118)
T KOG1275|consen 161 HIDLNTEKETRTTNVSAS--G--VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCG 234 (1118)
T ss_pred eeecccceeeeeeeccCC--c--eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEee
Confidence 567776665543322111 1 2234567889999999999999999999999999999999987655 688999998
Q ss_pred cCCce-------EEEEeeecCCceEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeC---CCc-eeeEEeecc
Q psy4754 176 WDTTL-------RCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDS---LKC-CRVNHLMGH 243 (304)
Q Consensus 176 ~d~~i-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~---~~~-~~~~~~~~h 243 (304)
..... .+++||+|..+.+.-+. ...+..-+.|.|. ...+++.+..|...+-|. .+. ..+....--
T Consensus 235 ~S~R~~~l~~D~FvkVYDLRmmral~PI~---~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~ 311 (1118)
T KOG1275|consen 235 YSMRRYNLAMDPFVKVYDLRMMRALSPIQ---FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN 311 (1118)
T ss_pred cccccccccccchhhhhhhhhhhccCCcc---cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC
Confidence 54432 23689998876543322 1123345667887 456777888889988883 222 111112222
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccC
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITK 288 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~ 288 (304)
...+..+.+|++|..+|-|-.++.|-+|. +.+..+++..++-+.
T Consensus 312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~Fn~~s~~t~ 355 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQFNEYSRETE 355 (1118)
T ss_pred CCcceeEEecCCCceEEEecccCcEeeec-CCCCCccCCCccccc
Confidence 34599999999999999999999999998 445545555554443
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-05 Score=72.17 Aligned_cols=210 Identities=14% Similarity=0.137 Sum_probs=133.1
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCc-EEEEEECCCCCeEEEEeCCCc---eEEEEeeeCCC--ee-Ee
Q psy4754 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-VSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRAD--KE-VA 106 (304)
Q Consensus 34 ~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~~l~sgs~D~~---i~~~~wd~~~~--~~-~~ 106 (304)
|++++..+|.|+.+|.|-+.+-. .+.++.+.++... |+.+....+.++|++-+-|.. +-+++||+... +. ..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 45788899999999999888753 3444667777777 666666656679999888776 23689998532 11 22
Q ss_pred EE------e-ccc-eeeceeeeEEcCCCCEEEEEeCCCeEEEecC--Cccccceecc--CcccceeEEEEcCCCcEEEEe
Q psy4754 107 CY------K-KDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVNHLM--GHENRVSCLQVSPDGTAFSSG 174 (304)
Q Consensus 107 ~~------~-~~~-~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~ 174 (304)
++ . +.+ ...++++++++.+-+.+|.|..+|.|..+.- ....-.+... .-..+|+++++..+++.+.-.
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 22 2 111 1235678889999899999999999999952 1111112222 234689999998888762222
Q ss_pred ecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee-ccccceEE
Q psy4754 175 SWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSC 249 (304)
Q Consensus 175 s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~i~~ 249 (304)
..-..| .+|.+....+ ..++..++ .+.++.+|++....+++++ +.-+.+|+.....+-..+. ||......
T Consensus 190 ~Tt~~V--~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 190 ATTEQV--MLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred Eeccee--EEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 223443 5777763332 22233333 3557777887766344443 3579999987666666666 66654433
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=80.03 Aligned_cols=169 Identities=19% Similarity=0.271 Sum_probs=117.8
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 84 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~ 84 (304)
++--+|+++.++-....... .+|+-+. -+++++.+|...|+|.+-|+.+.+.++++.+|.+.|..+.. .|+.|+
T Consensus 158 ~li~~Dl~~~~e~r~~~v~a--~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLi 231 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVSA--SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLI 231 (1118)
T ss_pred heeeeecccceeeeeeeccC--CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEE
Confidence 45567788776644333221 1244444 46789999999999999999999999999999999987665 499999
Q ss_pred EEe---------CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccc-c---ce
Q psy4754 85 SGS---------WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCC-R---VN 150 (304)
Q Consensus 85 sgs---------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~-~---~~ 150 (304)
|+| .|.-+ .+||++..+.+.-++.. ++..-+.|+|. ...++.++..|...+-|..+.. + ..
T Consensus 232 tCG~S~R~~~l~~D~Fv--kVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~ 306 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFV--KVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK 306 (1118)
T ss_pred Eeecccccccccccchh--hhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence 998 45554 58999877665433321 12234556665 3467778889999998833211 1 11
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
.+.--...+..++++++++.+|.|-.++.| .+|.
T Consensus 307 ~v~p~~s~i~~fDiSsn~~alafgd~~g~v--~~wa 340 (1118)
T KOG1275|consen 307 MVNPNGSGISAFDISSNGDALAFGDHEGHV--NLWA 340 (1118)
T ss_pred EEccCCCcceeEEecCCCceEEEecccCcE--eeec
Confidence 111222348899999999999999999986 5785
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-07 Score=75.70 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=104.6
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc-----eeeeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-----CRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~s 77 (304)
+..|-+=|++++--.. |+ ....|.++.|+-.++++..|...|.|...|+... ++...+. |...|+++..-
T Consensus 233 sqqv~L~nvetg~~qs-f~---sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~L 307 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQQS-FQ---SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQIL 307 (425)
T ss_pred cceeEEEEeecccccc-cc---cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhh
Confidence 3446666777763322 11 1122788999988899999999999999998543 4444444 88899998887
Q ss_pred C-CCCeEEEEeCCCceEEEEeeeCCCee---EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 78 P-DGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 78 ~-d~~~l~sgs~D~~i~~~~wd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
. ++++|++.+.+++| .+||.+.-+. +..++.|.....-..+.+.+....++++++|-..++|.+..+..+.+.
T Consensus 308 q~s~q~LmaS~M~gki--kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKI--KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred ccccceEeeccCcCce--eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 7 78899999999986 6999986655 666766544333334456677888999999999999998877665554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00043 Score=57.89 Aligned_cols=202 Identities=19% Similarity=0.125 Sum_probs=118.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEc-CCCCEEEEeeCCCcEEEEeCCCceeeeeecC-----CcCcEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-----HENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~-~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-----h~~~V~~l~ 75 (304)
..++|.-||+.+++... +... ....+++. +++.++++. .. .+.++|..+++....... .......++
T Consensus 20 ~~~~i~~~~~~~~~~~~-~~~~----~~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~ 92 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEV-IDLP----GPNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVA 92 (246)
T ss_dssp TTTEEEEEETTTTEEEE-EESS----SEEEEEEECTTSEEEEEE-TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEE
T ss_pred CCCEEEEEECCCCeEEE-EecC----CCceEEEEccCCEEEEEE-cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEE
Confidence 45677888888875432 2211 25677777 676666554 44 456669888754332221 234567899
Q ss_pred ECCCCCeEEEEeCCCc------eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCCeEEEecCCcccc
Q psy4754 76 VSPDGTAFSSGSWDTT------LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCR 148 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~------i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~ 148 (304)
+.++|++.++...... -++..++.. ++...... .....+.++|+|+++.|+. -+..+.|..+++.....
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 9999998887654321 112334433 22222111 1223578999999997764 56678899998743221
Q ss_pred -------ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEE-cCCCCEEEE
Q psy4754 149 -------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF-SVSGRLLFA 219 (304)
Q Consensus 149 -------~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~s 219 (304)
+..+..-.+..-.+++.++|++.++....+.| .+++.+ ++.+..+.... ..+++++| .|+...|..
T Consensus 169 ~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I--~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 169 ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRI--VVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEE--EEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEE
T ss_pred ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEE--EEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEE
Confidence 11222222357889999999887776656664 578877 66666655442 24688899 466555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00069 Score=58.17 Aligned_cols=227 Identities=16% Similarity=0.173 Sum_probs=125.7
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeee--cC-Cc--
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHL--MG-HE-- 68 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~--~~-h~-- 68 (304)
+++.++|..+++.+...+.-. ...+..+|+|+.+++++ ..-.|.+||..+..+...+ .. |.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeeccc----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 478999999998877655333 23367899999887653 3457999999887554422 11 11
Q ss_pred --CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-
Q psy4754 69 --NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK- 145 (304)
Q Consensus 69 --~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~- 145 (304)
.....++++.|+++++.-..--.-.|.+.|+...+-+.++.... +...|...+.-|.+-+.||.+....+..
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-----CWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-----EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-----EEEEEecCCCceEEEecCCceEEEEECCC
Confidence 11224578888887766554444446678887777665544322 2223332334566666677666654331
Q ss_pred cccce--------------------------eccCcccceeEEEEcCCC-------------------------------
Q psy4754 146 CCRVN--------------------------HLMGHENRVSCLQVSPDG------------------------------- 168 (304)
Q Consensus 146 ~~~~~--------------------------~~~~h~~~v~~v~~sp~~------------------------------- 168 (304)
++... -+....+.|..+.++.+.
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 11000 001122233333333221
Q ss_pred --cEEEEe---e-----cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-EEEEE-eCCCcEEEEeCCCcee
Q psy4754 169 --TAFSSG---S-----WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAG-YNDYTINVWDSLKCCR 236 (304)
Q Consensus 169 --~~las~---s-----~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg-~~d~~i~iwd~~~~~~ 236 (304)
+.+..- + .|..-.||++|+.+.+++..+.... ++.++..+.+.+ +|.+. ..++.+.+||..+++.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 111110 0 1111245777888888877776432 456888998877 44443 3578999999999998
Q ss_pred eEEeec
Q psy4754 237 VNHLMG 242 (304)
Q Consensus 237 ~~~~~~ 242 (304)
++++.+
T Consensus 325 ~~~~~~ 330 (342)
T PF06433_consen 325 VRSIEQ 330 (342)
T ss_dssp EEEE--
T ss_pred Eeehhc
Confidence 888764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.4e-05 Score=73.88 Aligned_cols=237 Identities=15% Similarity=0.072 Sum_probs=131.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEE--EeeeCCCeeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR--LFDLRADKEV 105 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~--~wd~~~~~~~ 105 (304)
.|.++.|..+..-++.+..+|.|.+-|+++...- -...-.+.|.+.+|+||.+.++-...+.++-+- .|++-..+++
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 4899999999888888889999999998775321 122346889999999999988877777775221 1222233332
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEee---cCCceEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS---WDTTLRC 182 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s---~d~~i~i 182 (304)
.. .+...-....+.|......| -|+ .|....-+..............+.=..|.|..||++||+.. ..++-++
T Consensus 149 ~~--d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 149 DA--DDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cc--ccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 10 00000001122222211111 111 11111111110000000001112235689999999999843 2333346
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE---eCCCcEEEEeCCCceeeEEe----eccccceEEEEEccC
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG---YNDYTINVWDSLKCCRVNHL----MGHENRVSCLQVSPD 255 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg---~~d~~i~iwd~~~~~~~~~~----~~h~~~i~~l~~sp~ 255 (304)
++||-+ +..-..-.. ....-.+++|-|.|..+++- .+|..|.+|. .+|.+..++ ..-..+|..|+|+.+
T Consensus 225 rV~drE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEeccc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 789865 221111011 11123678999999999984 3456798886 333333322 122344899999999
Q ss_pred CCEEEE---eecCCeeeeccc
Q psy4754 256 GTAFSS---GSWDTTLRDEES 273 (304)
Q Consensus 256 g~~las---gs~D~~i~~~~~ 273 (304)
+..||. ......|++|..
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CCceeeeecccccceEEEEEe
Confidence 999998 444555999975
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-05 Score=71.14 Aligned_cols=223 Identities=17% Similarity=0.106 Sum_probs=129.9
Q ss_pred EEEcCCCCEEE-EeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceE--EEEeeeCCCeeEeEE
Q psy4754 32 VDFSVSGRLLF-AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR--CRLFDLRADKEVACY 108 (304)
Q Consensus 32 ~~~~~~g~~l~-tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~--~~~wd~~~~~~~~~~ 108 (304)
+-++|||+.+. +.-..+.+.+.|..+.+...++..-. .-.-++++++|+++++.+.+...- +...+.........+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 33455665442 33445666677777665555443222 235678899999888776432210 112222111111111
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc----cccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEE
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCR 183 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~ 183 (304)
.... ...+.++|++... .++.|.+.|..+ ...+..+.--......+.++|||++++.++. +.++ .
T Consensus 277 ni~~------iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tV--S 346 (635)
T PRK02888 277 NIAR------IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTV--T 346 (635)
T ss_pred chHH------HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcE--E
Confidence 1100 1134567777665 367899999887 2223333333456788999999998776665 6665 5
Q ss_pred EeeecCCce------------EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------ceeeEEee
Q psy4754 184 LFDLRADKE------------VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----------CCRVNHLM 241 (304)
Q Consensus 184 ~~d~~~~~~------------~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~----------~~~~~~~~ 241 (304)
++|+.+.+. +...+. .......+|.++|..+.+-.-|..|-.|++.+ ...+..+.
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 788876542 111111 12346778999999888888899999999765 23344444
Q ss_pred ccccceEEEE-----EccCCCEEEEe---ecCCee
Q psy4754 242 GHENRVSCLQ-----VSPDGTAFSSG---SWDTTL 268 (304)
Q Consensus 242 ~h~~~i~~l~-----~sp~g~~lasg---s~D~~i 268 (304)
-|.++..-.+ -.|||++|++. |.|+.+
T Consensus 424 V~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl 458 (635)
T PRK02888 424 VHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFL 458 (635)
T ss_pred CCCccceeeecCCCcCCCCCCEEEEcccccccccc
Confidence 4544433222 36899999986 566665
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-07 Score=72.38 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=93.4
Q ss_pred cCCCCEEEEEeCCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEee------cCCceEEEEeeecCCceEE
Q psy4754 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGS------WDTTLRCRLFDLRADKEVA 194 (304)
Q Consensus 123 s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s------~d~~i~i~~~d~~~~~~~~ 194 (304)
+..+..+++++.||.+.+.+.+.-..+... ..|.+. -+.++...++.+.++. .|. .+.|+++..+.+.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~---~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDN---FYANTLDPIKTLI 173 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccc---eeeeccccccccc
Confidence 344667899999999999986542111110 112111 1122333455555443 222 1355554433221
Q ss_pred EeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCcee-eEEeeccccceEEEEEcc-CCCEEEEeecCCeeeec
Q psy4754 195 CYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 195 ~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~ 271 (304)
.-+ .. .-.+.+++-+|..+ .+++|++||.+-+||.+.... ...++.|+.+|+-+.|+| ++..|.++|+|+.+..|
T Consensus 174 ~~~-~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 174 PSK-KA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccc-cc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 111 11 12367888888865 456688999999999876543 334678999999999999 77899999999999999
Q ss_pred cccccc
Q psy4754 272 ESKNRY 277 (304)
Q Consensus 272 ~~~~~~ 277 (304)
+....+
T Consensus 252 das~~~ 257 (319)
T KOG4714|consen 252 DASTTF 257 (319)
T ss_pred cCCCce
Confidence 876433
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-05 Score=70.54 Aligned_cols=243 Identities=12% Similarity=0.083 Sum_probs=151.2
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecC-CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~-h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
+.|..+|.-+.|..+.+.|-|...+|-|.+|=+-++.=.. .+.. .+.-|.+++|+.||..+.-.-.||.+.+.--|
T Consensus 68 eGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-- 145 (1189)
T KOG2041|consen 68 EGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-- 145 (1189)
T ss_pred ccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec--
Confidence 3455558889999988999999999999999987764222 1222 24567899999999887666666665332111
Q ss_pred CCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-----e--e----ccCcccceeEEEE-----
Q psy4754 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----N--H----LMGHENRVSCLQV----- 164 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~-----~--~----~~~h~~~v~~v~~----- 164 (304)
++.+..-+.... ....+.+++|.+.++.+-..|.+.+||....... . + +......|..+.|
T Consensus 146 -GNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 146 -GNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred -cceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 222221111111 1235779999999998989999999995432110 0 0 0111112333332
Q ss_pred ---cCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC---------CcEEEEeCC
Q psy4754 165 ---SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---------YTINVWDSL 232 (304)
Q Consensus 165 ---sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d---------~~i~iwd~~ 232 (304)
-||...+|.|-..|.+.+ +-......++.. ... ..+...-|+++|..|+.++.+ +.|.+|..
T Consensus 223 ~~v~pdrP~lavcy~nGr~Qi-MR~eND~~Pvv~-dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp- 296 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQI-MRSENDPEPVVV-DTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP- 296 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehh-hhhcCCCCCeEE-ecc---cEeecceecCCCcEEEEccCcccccCccccceEEEecc-
Confidence 347778888888887653 222222233221 111 235677899999999998654 24555542
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
-|..+.+++-....|++++|-..|-.+|-+- |..|.+=+.+++|
T Consensus 297 ~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~y 340 (1189)
T KOG2041|consen 297 YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEY 340 (1189)
T ss_pred chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccc
Confidence 3456777777888999999988787777653 6777655544444
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=71.76 Aligned_cols=144 Identities=18% Similarity=0.217 Sum_probs=99.6
Q ss_pred EEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc----cceeccCcccceeEEEEcC-CC
Q psy4754 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSP-DG 168 (304)
Q Consensus 94 ~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~v~~sp-~~ 168 (304)
+.+-|+.++-+.- +...+ .+.+..|...++.+..|...|.|..+|++.+. --.+..-|...|+++..-. ++
T Consensus 236 v~L~nvetg~~qs-f~sks---DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~ 311 (425)
T KOG2695|consen 236 VLLTNVETGHQQS-FQSKS---DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQ 311 (425)
T ss_pred eEEEEeecccccc-cccch---hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhcccc
Confidence 4567766543321 11111 13355677778899999999999999998752 1123345888899988655 67
Q ss_pred cEEEEeecCCceEEEEeeecCCce---EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 243 (304)
+.+.+.+.++.| .+||++-.++ +..+.+|.......-+-..+....++++++|...+||.+..+..+.++.-.
T Consensus 312 q~LmaS~M~gki--kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 312 QKLMASDMTGKI--KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ceEeeccCcCce--eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 788888889986 5999987776 667766543222222234567788999999999999999988888776543
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00014 Score=67.51 Aligned_cols=242 Identities=17% Similarity=0.119 Sum_probs=152.7
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC----------CeEEEEeCCCceEEE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG----------TAFSSGSWDTTLRCR 95 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~----------~~l~sgs~D~~i~~~ 95 (304)
.+.-.+++|+|.| |++-+.-..|-+-|..+.+.+..++.|...|+.+.|+|-. -.++-++.|..-+|.
T Consensus 15 ~sN~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346789999887 3334445578899998899999999999999999999732 234445667777788
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEc---CCC-CEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC-CCcE
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFS---VSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTA 170 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s---~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~ 170 (304)
+||+.....+..++.... ++..+.|- ++. ..+++-.....+.+|+..+++++=..........|+.+.| |.++
T Consensus 93 l~d~~~~s~~~~l~~~~~--~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSND--SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEehhhhhhhhhcCCCc--chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999987666554444322 23444443 234 4566667778999999888877654443334566777877 4455
Q ss_pred EEEeecCCceEEEEee-ecC------CceEEEeecCce---------------------e--eeeeEEEEcCCCCEEEEE
Q psy4754 171 FSSGSWDTTLRCRLFD-LRA------DKEVACYKKDSI---------------------L--FGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 171 las~s~d~~i~i~~~d-~~~------~~~~~~~~~~~~---------------------~--~~~~~~~~s~~g~~l~sg 220 (304)
|..-+..+.+. +-+ +.. ++.++.-..+.- . ..+-.++|+|.-+.++-.
T Consensus 171 ~~~l~s~g~vl--~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi 248 (1062)
T KOG1912|consen 171 FCVLGSKGFVL--SCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI 248 (1062)
T ss_pred EEEEccCceEE--EEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE
Confidence 55555455431 222 111 111111111000 0 012246778876544444
Q ss_pred eCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC--EEEEeecCCeeeeccc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEES 273 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~ 273 (304)
.--+.+.++|++-..++....-..+.+.=+.+-|+++ .|.++-.||.+.+|..
T Consensus 249 ~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 249 TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 4467899999876666766555556666677777764 6888999999999964
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.1e-06 Score=76.17 Aligned_cols=125 Identities=19% Similarity=0.140 Sum_probs=89.3
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCc--------eEEEEeeeCCCeeEeEE--
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT--------LRCRLFDLRADKEVACY-- 108 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~--------i~~~~wd~~~~~~~~~~-- 108 (304)
.++|.|.+.|+|.++|+.++...+.+..|...|.++.|-... .|+|-+.... -++.+-|++++......
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence 478899999999999999998888899999999999998544 3444432111 11245677665443221
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEc
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 165 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~s 165 (304)
++. ...+|..+..|..++|++....+..+.+||+++...++.....-.-++.+.|+
T Consensus 517 ~~~-despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 517 QKP-DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred CCC-CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 222 23357788899999999999999999999998766655433332337888887
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-05 Score=64.22 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=103.3
Q ss_pred CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee---EeEEeccce---eeceeeeEEcCCCCE-EEEEeCCCeE
Q psy4754 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSI---LFGATSVDFSVSGRL-LFAGYNDYTI 138 (304)
Q Consensus 66 ~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~---~~~~~~~~~---~~~~~~~~~s~~~~~-l~sg~~dg~i 138 (304)
+|.--+.+++|+.|.+.++|+- | +++-+|++..... +.-++++.. ...+++..|+|.... +.-.+..|.|
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-d--LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-D--LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred cceeEeeeeeecCchheeeecc-c--eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 4666688999999999888863 3 5578999864322 222222211 123678889987553 4446778999
Q ss_pred EEecCCccc------cce----------eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc-eEEEeec---
Q psy4754 139 NVWDSLKCC------RVN----------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKK--- 198 (304)
Q Consensus 139 ~iwd~~~~~------~~~----------~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~-~~~~~~~--- 198 (304)
++-|++... .+. -+.+-..+|..+.|+|+|+++++-. ...+.+||.+..+ ++.+.+-
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd---yltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD---YLTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec---cceEEEEecccccCCceeechHHH
Confidence 999987421 111 1123345788899999999988743 2335799987654 3444321
Q ss_pred ----------CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 199 ----------DSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 199 ----------~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.+..+.-..+.||.|.+.+++|+..+..-+|.
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 11223345688999999999999887777775
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0019 Score=58.55 Aligned_cols=245 Identities=13% Similarity=0.079 Sum_probs=116.3
Q ss_pred ceeEEeeccccc------eEeeeeccc--cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 4 NHCRLFDLRADK------EVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 4 ~~v~~wd~~~~~------~~~~~~~~~--~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
+.|+.+|+.+.. .++.-.++. .......+.++|+|++++.+ .||.-.|+......... .+.-....
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~v 75 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFV 75 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEE
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEE
Confidence 567888887761 111111111 11125889999999998874 67788888854332221 23344678
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
|.++++ ++.-....+|++. -++... ....++... .+..+ |. |..|...+ ++.|.+||+.+.+.+.++...
T Consensus 76 w~~~n~-yAv~~~~~~I~I~-kn~~~~-~~k~i~~~~---~~~~I-f~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 76 WSSRNR-YAVLESSSTIKIY-KNFKNE-VVKSIKLPF---SVEKI-FG--GNLLGVKS-SDFICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp E-TSSE-EEEE-TTS-EEEE-ETTEE--TT-----SS----EEEE-E---SSSEEEEE-TTEEEEE-TTT--EEEEESS-
T ss_pred EecCcc-EEEEECCCeEEEE-EcCccc-cceEEcCCc---ccceE-Ec--CcEEEEEC-CCCEEEEEhhHcceeeEEecC
Confidence 888555 4444445665431 222211 111122211 12222 22 66555554 448999999988877776533
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeec--------CC-ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcE
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR--------AD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 226 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~--------~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i 226 (304)
+|..|.|+++++++|-.+.+.. .+.-++.. .. ..+..... ....+.+..|..+ -++.+. .. .+
T Consensus 146 --~vk~V~Ws~~g~~val~t~~~i-~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~l 217 (443)
T PF04053_consen 146 --AVKYVIWSDDGELVALVTKDSI-YILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HL 217 (443)
T ss_dssp --E-EEEEE-TTSSEEEEE-S-SE-EEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EE
T ss_pred --CCcEEEEECCCCEEEEEeCCeE-EEEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eE
Confidence 3899999999999999887764 34445544 00 02222221 0123566777766 333333 33 66
Q ss_pred EEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 227 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 227 ~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+-+ ..|+ ...+..-..++.=+.+.|+...+...-.|..|..+.++.
T Consensus 218 kYl--~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 218 KYL--VNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEE--ETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEE--EcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 653 3332 222332356788889999777888888888888776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=66.07 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=60.4
Q ss_pred eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
..+.+++++|+.+.++.|+.||+|.+||..++... +..+.-.++.++|+|+|..++.|+.-|.+++||..-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35789999999999999999999999998776433 334556678999999999999999999999998644
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0038 Score=55.24 Aligned_cols=251 Identities=16% Similarity=0.144 Sum_probs=125.5
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee-ecC-------Cc-------
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMG-------HE------- 68 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~-~~~-------h~------- 68 (304)
+.+-|||+++++..+.... ...+....|+|+|+.+|-. .++.|.+++..+++..+- ..| -.
T Consensus 23 ~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred eeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 4578899999866443322 2347889999999988766 467899999876643321 111 00
Q ss_pred --CcEEEEEECCCCCeEEEEeCCCc-e---------------------------------EEEEeeeCCCeeEeEEec--
Q psy4754 69 --NRVSCLQVSPDGTAFSSGSWDTT-L---------------------------------RCRLFDLRADKEVACYKK-- 110 (304)
Q Consensus 69 --~~V~~l~~s~d~~~l~sgs~D~~-i---------------------------------~~~~wd~~~~~~~~~~~~-- 110 (304)
+.-..+-|||||++|+....|.+ + ++.++|+.+++....-..
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~ 178 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS 178 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc
Confidence 11246789999998877654332 1 112222222221100000
Q ss_pred -cceeeceeeeEEcCCCCEEEE--EeCC---CeEEEecCCcccccee-ccCcccce---eEEEEc-CCCcE-EEEeecCC
Q psy4754 111 -DSILFGATSVDFSVSGRLLFA--GYND---YTINVWDSLKCCRVNH-LMGHENRV---SCLQVS-PDGTA-FSSGSWDT 178 (304)
Q Consensus 111 -~~~~~~~~~~~~s~~~~~l~s--g~~d---g~i~iwd~~~~~~~~~-~~~h~~~v---~~v~~s-p~~~~-las~s~d~ 178 (304)
.....-+..+.|.++++.++. .+.+ ..+.++|..++..... .......| ....|. +++.. +.....|+
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G 258 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG 258 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence 000011345667777773333 3332 2344445544322111 11112222 345554 66654 44445778
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeee-EEEEcCCCCE-EEEEeCC--CcEEEE--eCCCceeeEEeeccccceEEEEE
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGAT-SVDFSVSGRL-LFAGYND--YTINVW--DSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~-l~sg~~d--~~i~iw--d~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
.-++.+++...+... .+-... ..|. .+.++++++. ++++..+ ..-++| ++..+..+..+....+.-..+.|
T Consensus 259 ~~hly~~~~~~~~~~-~lT~G~--~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~ 335 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPR-QLTSGD--WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASF 335 (353)
T ss_dssp SEEEEEEETTSSEEE-ESS-SS--S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE
T ss_pred CcEEEEEccccccee-ccccCc--eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEE
Confidence 777777777766533 221111 2343 3567787665 4455542 234444 45512334444433333368999
Q ss_pred ccCCCEEEE
Q psy4754 253 SPDGTAFSS 261 (304)
Q Consensus 253 sp~g~~las 261 (304)
||+|++++-
T Consensus 336 Spdg~y~v~ 344 (353)
T PF00930_consen 336 SPDGKYYVD 344 (353)
T ss_dssp -TTSSEEEE
T ss_pred CCCCCEEEE
Confidence 999998874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0006 Score=58.82 Aligned_cols=258 Identities=12% Similarity=0.061 Sum_probs=135.3
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eE
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AF 83 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l 83 (304)
|++.+..+-+..-.+ ..++..|..++|+|... ++..++.+.+|+|.|+.+.....++..| .++++++|--|.. ++
T Consensus 175 v~~l~~~~fkssq~l--p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL--PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcc--cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 555555554332111 12222388999999776 7889999999999999999888888877 8899999988765 45
Q ss_pred EEEeCCCceEEEEeeeCCCeeEeE-Eeccceeeceeee------EEcCCCCEEEEEeCCCeEEEecCCc--cccce-ecc
Q psy4754 84 SSGSWDTTLRCRLFDLRADKEVAC-YKKDSILFGATSV------DFSVSGRLLFAGYNDYTINVWDSLK--CCRVN-HLM 153 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~------~~s~~~~~l~sg~~dg~i~iwd~~~--~~~~~-~~~ 153 (304)
..|-..|. |.++|++..+...+ +..+...-++..+ ...+.+.+++.... ....|++.- ..... ...
T Consensus 252 YaGl~nG~--VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 252 YAGLQNGM--VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEeccCce--EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCccccc
Confidence 55555666 47899986443221 1111111112222 12233444444443 244565432 11111 112
Q ss_pred CcccceeEEEEcCCCcE-EEEeecCCc---eE--EEEeeecCCceEEEeecC-----cee-eeeeEEEEcCCCCEEEE-E
Q psy4754 154 GHENRVSCLQVSPDGTA-FSSGSWDTT---LR--CRLFDLRADKEVACYKKD-----SIL-FGATSVDFSVSGRLLFA-G 220 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~-las~s~d~~---i~--i~~~d~~~~~~~~~~~~~-----~~~-~~~~~~~~s~~g~~l~s-g 220 (304)
+.++...++++.+-.++ ++|.-.+.. ++ ..-.|.+.+..+..-+.. ... ..-..+.-.++.++++. |
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 33445555666553333 333322110 00 000111111111110000 000 00112222455566555 5
Q ss_pred eCCCcEEEEeCCCceeeEEeeccccceEEEEEcc-CC-CEEEEeecCCeeeecc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DG-TAFSSGSWDTTLRDEE 272 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g-~~lasgs~D~~i~~~~ 272 (304)
.+.+.+.+||..+.+.+.++.- ..+|..+.... ++ .+|+.- .|..++++.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk 459 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYK 459 (463)
T ss_pred CCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhe-ecceEEEEe
Confidence 5667899999999888887754 47888877654 33 455554 366666653
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00059 Score=64.18 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=121.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE-eEEeccceeeceeeeEEcCCCCEEEEEeCCC-----eEEEecC
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV-ACYKKDSILFGATSVDFSVSGRLLFAGYNDY-----TINVWDS 143 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg-----~i~iwd~ 143 (304)
.|+ +|++.+..++-|+.||.| |=+++.... ..++..... -+..+-...+..+|++.+.|+ .+++||+
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V----~~Ln~s~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRV----VILNSSFQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred cee--EEcCCCceEEEeeccccE----EEecccceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 455 466778899999999875 334433333 444432221 122222223335677765543 5999997
Q ss_pred Cccc------cc--eeccC-----cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEE
Q psy4754 144 LKCC------RV--NHLMG-----HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 210 (304)
Q Consensus 144 ~~~~------~~--~~~~~-----h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (304)
.+.. ++ ..+.. .+.++.+++.+.+-+.+|.|-.+|.|.+.-=|+...+-...--.+....+++.+++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 6431 12 01122 34568889999998899999999987422113221111111111122246899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcee-eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 211 SVSGRLLFAGYNDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 211 s~~g~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
..+++.++-......|.+|.+....+ +..+..|.....|..|++-...|++++ +..+.+++.+.+..+..+.
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 98888733333456899998774442 444667888999999987555355443 4578888877666555444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0056 Score=55.06 Aligned_cols=251 Identities=10% Similarity=-0.067 Sum_probs=131.9
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcE-----EEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV-----SCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V-----~~l~~s 77 (304)
++++.-+|..+++++=..+ .......+... .+..++.+..+|.+.-+|..+|+.+=......... .+-...
T Consensus 129 ~g~l~ald~~tG~~~W~~~--~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTK--VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred CCEEEEEECCCCCCccccc--CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 4678888888887753322 21111111111 13456667788999999999987654432211100 011111
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceee-----ceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccce
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF-----GATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~-----~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
+..++.++.++.+ ...|..+++.+...+...... ....+..+| .+..++.++.++.+..+|..+++.+=
T Consensus 205 --~~~v~~~~~~g~v--~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W 280 (394)
T PRK11138 205 --FGGAIVGGDNGRV--SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW 280 (394)
T ss_pred --CCEEEEEcCCCEE--EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence 2345555666664 446666666554432111000 000001111 24567778889999999988776442
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
+.. ......+.. ++..+..++.++.+ ..+|..+++.+=....... ....+... .+.++..++.+|.++..|
T Consensus 281 ~~~--~~~~~~~~~--~~~~vy~~~~~g~l--~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 281 KRE--YGSVNDFAV--DGGRIYLVDQNDRV--YALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred eec--CCCccCcEE--ECCEEEEEcCCCeE--EEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 211 011111222 34456666677775 4677777654311111000 00111111 256677888999999999
Q ss_pred CCCceeeEEeeccccceEE-EEEccCCCEEEEeecCCeeeecc
Q psy4754 231 SLKCCRVNHLMGHENRVSC-LQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 231 ~~~~~~~~~~~~h~~~i~~-l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
..+++.+.+..-....+.+ -.+ .+..|..++.|+.+..+.
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 9999888776543333332 122 244677778899887654
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.1e-05 Score=43.32 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=33.7
Q ss_pred eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 235 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
.....+..|...|.++.|+|++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.5e-05 Score=67.36 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=65.9
Q ss_pred EEeeccccceEeeeeccccc-cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEE
Q psy4754 7 RLFDLRADKEVACYKKDSIL-FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 85 (304)
Q Consensus 7 ~~wd~~~~~~~~~~~~~~~~-~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s 85 (304)
.+|+...++.....-..... ..+.+++++|+...++.|..||.|.+||...+... +....=....++|+|+|..++.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence 46777777543221111112 23899999999999999999999999998766322 2222334578999999999999
Q ss_pred EeCCCceEEEEeeeCC
Q psy4754 86 GSWDTTLRCRLFDLRA 101 (304)
Q Consensus 86 gs~D~~i~~~~wd~~~ 101 (304)
|+.-|.+ .+||+.-
T Consensus 317 ~s~qGel--Q~FD~AL 330 (545)
T PF11768_consen 317 GSEQGEL--QCFDMAL 330 (545)
T ss_pred EcCCceE--EEEEeec
Confidence 9988885 6799764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.008 Score=52.42 Aligned_cols=138 Identities=13% Similarity=0.103 Sum_probs=76.5
Q ss_pred CEEEEEeCCCeEEEecCCccccceecc--CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeee
Q psy4754 127 RLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 204 (304)
Q Consensus 127 ~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~ 204 (304)
.+++.+. .+.|.+|++...+.+.... .....+.++... +..++.|...+.+.+.-|+... ..+.....+.....
T Consensus 99 ~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~-~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 99 GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN-NKLILVARDYQPRW 174 (321)
T ss_dssp TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT-E-EEEEEEESS-BE
T ss_pred CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC-CEEEEEEecCCCcc
Confidence 3444433 4788888876555222221 122356666554 4588888877777555555432 22333333333345
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------ce-ee---EEeeccccceEEE---EEcc--CCC------EEEEe
Q psy4754 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLK-------CC-RV---NHLMGHENRVSCL---QVSP--DGT------AFSSG 262 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-------~~-~~---~~~~~h~~~i~~l---~~sp--~g~------~lasg 262 (304)
++++.|-++++.++++..+|.+.++.... +. .+ ..+. ....|+++ .+.| .+. .++-+
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~ 253 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYG 253 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEE
Confidence 78888887778999999999999986441 11 22 2222 24567777 5555 222 37778
Q ss_pred ecCCeee
Q psy4754 263 SWDTTLR 269 (304)
Q Consensus 263 s~D~~i~ 269 (304)
+.+|.|-
T Consensus 254 T~~G~Ig 260 (321)
T PF03178_consen 254 TVDGSIG 260 (321)
T ss_dssp ETTS-EE
T ss_pred ecCCEEE
Confidence 8888886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=68.36 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=60.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
++++.|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.||++|+.|+|+-.-+.+ .+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v--~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSV--HLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCcee--EEEEee
Confidence 6789999998899999999999999998877666667899999999999999999999777775 456544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0027 Score=58.89 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=100.2
Q ss_pred EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccceeccCcccceeEEE-------
Q psy4754 95 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRVNHLMGHENRVSCLQ------- 163 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~v~------- 163 (304)
...|..+.+....+..... ...+.++++++++++.+.+ .++..-+..+. + ..+.
T Consensus 218 SvID~etmeV~~qV~Vdgn---pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~----------d--~~vvfni~~ie 282 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGN---LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER----------D--WVVVFNIARIE 282 (635)
T ss_pred EEEECccceEEEEEEeCCC---cccceECCCCCEEEEeccCcccCcceeeeccccC----------c--eEEEEchHHHH
Confidence 3455555444433332221 2356789999998887521 22222222111 1 2222
Q ss_pred -EcCCCcEEEEeecCCceEEEEeeecC-----CceEEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCcee
Q psy4754 164 -VSPDGTAFSSGSWDTTLRCRLFDLRA-----DKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCR 236 (304)
Q Consensus 164 -~sp~~~~las~s~d~~i~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~ 236 (304)
+.++|+....+ ++.| .+.|.++ .+.+..+.... .+..++++|||+++++++ .+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V~--gn~V--~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 283 EAVKAGKFKTIG--GSKV--PVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HhhhCCCEEEEC--CCEE--EEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 34467655542 4554 5889887 33444444332 357889999999977754 578999999876442
Q ss_pred ------------eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 237 ------------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 237 ------------~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
+.+..-- ......+|.++|..+.|-.-|..|--|++.....+|..+
T Consensus 356 ~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~ 413 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGE 413 (635)
T ss_pred hhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccc
Confidence 3333222 233567999999999999999999999988766555443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.015 Score=52.42 Aligned_cols=237 Identities=12% Similarity=0.058 Sum_probs=116.2
Q ss_pred EEEcCCCCEEEEeeCC----------C-cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 32 VDFSVSGRLLFAGYND----------Y-TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 32 ~~~~~~g~~l~tg~~d----------g-~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
++.+|.|..+|....+ . .|+||+.. |+.+..+.=-.+.+.++.|..+ +.|+.-..||++ +++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v--~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTV--RVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEE--EEEeCC
Confidence 4556666655555333 2 49999985 4455544322388999999875 455566779885 678875
Q ss_pred CCeeEeEEeccceeeceee-----eEEcCCCCEEEEEeCCCeEEEec-CCccccce---eccC-----cccc-eeE-EEE
Q psy4754 101 ADKEVACYKKDSILFGATS-----VDFSVSGRLLFAGYNDYTINVWD-SLKCCRVN---HLMG-----HENR-VSC-LQV 164 (304)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~l~sg~~dg~i~iwd-~~~~~~~~---~~~~-----h~~~-v~~-v~~ 164 (304)
... ...+..+.....+.. ..+..+|-.++ ..++.+.+-+ ........ .... |... ... ..+
T Consensus 110 G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 GEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred Cce-eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 333 111111111111111 12222342222 3344444433 22110111 1111 1000 111 123
Q ss_pred cCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-
Q psy4754 165 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH- 243 (304)
Q Consensus 165 sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h- 243 (304)
+.+....+....+..+. +.+....+. ... ..++..++.||+|+++|.-..+|.+.+....-.+.+.++...
T Consensus 187 ~~~~~~~i~~~~g~~i~--~i~~~~~~~---i~~---~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~ 258 (410)
T PF04841_consen 187 SSDRVVEILLANGETIY--IIDENSFKQ---IDS---DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS 258 (410)
T ss_pred ecCcceEEEEecCCEEE--EEEcccccc---ccC---CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence 44444444434444431 122111111 111 125689999999999999888999988865444444444433
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeecc
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSR 285 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~ 285 (304)
..+...+.|--+...++. ....+.+......+..+.....
T Consensus 259 ~~~p~~~~WCG~dav~l~--~~~~l~lvg~~~~~~~~~~~~~ 298 (410)
T PF04841_consen 259 KSPPKQMAWCGNDAVVLS--WEDELLLVGPDGDSISFWYDGP 298 (410)
T ss_pred CCCCcEEEEECCCcEEEE--eCCEEEEECCCCCceEEeccCc
Confidence 346677778544333322 3566777665555444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0046 Score=55.58 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=134.1
Q ss_pred CceeEEeeccccceEeeeecccccc--------ce-eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF--------GA-TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 73 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~--------~i-~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 73 (304)
++.+.-+|..+++++=......... .+ ..+.. .+..++.++.+|.+.-+|..+|+.+=..... +.+.+
T Consensus 78 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~s 154 (394)
T PRK11138 78 AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALS 154 (394)
T ss_pred CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccCC-Cceec
Confidence 3567778888887652222111000 00 01111 2455667788999999999998765433322 22221
Q ss_pred -EEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceee---ceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 74 -LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF---GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 74 -l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
..+. +..++.+..++.+ .-+|..+++.+..++...... ...+-.+ .+..++.++.++.+...|..+++.+
T Consensus 155 sP~v~--~~~v~v~~~~g~l--~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~ 228 (394)
T PRK11138 155 RPVVS--DGLVLVHTSNGML--QALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLI 228 (394)
T ss_pred CCEEE--CCEEEEECCCCEE--EEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhh
Confidence 1111 3355556667764 568888888877665431110 0001111 1345667778888988888776543
Q ss_pred eeccC------cc-cceeEEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 150 NHLMG------HE-NRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 150 ~~~~~------h~-~~v~~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
-+... +. .....+..+| .+..+..++.++.+ ..+|..+++.+=...... ... ....+..+..+
T Consensus 229 W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l--~ald~~tG~~~W~~~~~~----~~~--~~~~~~~vy~~ 300 (394)
T PRK11138 229 WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL--VALDLRSGQIVWKREYGS----VND--FAVDGGRIYLV 300 (394)
T ss_pred heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE--EEEECCCCCEEEeecCCC----ccC--cEEECCEEEEE
Confidence 22110 00 0011111222 23355566677765 567888776532211111 111 12245666777
Q ss_pred eCCCcEEEEeCCCceeeEEeeccc-cceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+.++.+..+|..+++.+-....-. ....+.++ .+..|..++.|+.+...|...+
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 788999999998887654322111 11122222 2456677888999887776554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0013 Score=59.31 Aligned_cols=187 Identities=17% Similarity=0.126 Sum_probs=106.7
Q ss_pred cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEe--c
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVW--D 142 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iw--d 142 (304)
...+..-+|+|+++.++--+- .+.-++.++|+..++........... ..-.|+|||+.++-. ..||...+| |
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 345667789999886544321 22133578888877655544432221 234699999987664 456666555 6
Q ss_pred CCccccceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEE-EeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 143 SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVA-CYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 143 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
+...+. ..+..-.+.-..=.|+|||+.++-.| ..+.-.|.+++.+...... +..... -....++|||++|+..
T Consensus 269 l~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~----~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 269 LDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG----NSNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC----CcCccCCCCCCEEEEE
Confidence 655442 22222222222446899998877554 4666667788877665422 222221 1245689999998886
Q ss_pred eC-CCc--EEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 221 YN-DYT--INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 221 ~~-d~~--i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
+. +|. |-+.|..++.....+ .+......-.++|+|+.++..+
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEec
Confidence 63 344 555665554432222 2333334456788888777554
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00055 Score=63.93 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=104.4
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 196 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~ 196 (304)
+.+++++ +++|+-|+-+|.|++.+.... . .+...|... .-+|++++|||.||++ .+..+-+.+....+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv--~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKV--VIGSLFTDDEITQY 109 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcE--EEeeccCCccceeE
Confidence 3455554 578999999999999985432 2 344455433 5589999999999986 35666555555444
Q ss_pred ecCceeeeeeEEEEcCC-----CCEEEEEeCCCcEEEEeCC---CceeeEEeeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 197 KKDSILFGATSVDFSVS-----GRLLFAGYNDYTINVWDSL---KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~-----g~~l~sg~~d~~i~iwd~~---~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
.-+ .++.+++++|+ .+.+++|+..| +.++.-. ....+ .+..-.++|.++.|. |.++|=++ |--|
T Consensus 110 df~---rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWan-d~Gv 181 (846)
T KOG2066|consen 110 DFK---RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWAN-DDGV 181 (846)
T ss_pred ecC---CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEec-CCCc
Confidence 333 25688999998 56788888777 7776421 11111 244567899999994 66776654 6678
Q ss_pred eeccccccchhheee--ccccCCce-eEEEEEecC
Q psy4754 269 RDEESKNRYMQYLLR--SRITKPTQ-GLTVYFQDR 300 (304)
Q Consensus 269 ~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 300 (304)
|++|...+....+.+ ++..+|.. ++.|-.++.
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~ 216 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE 216 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCC
Confidence 999876554222221 34444422 566666554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.011 Score=51.03 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=124.5
Q ss_pred EEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE--
Q psy4754 32 VDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY-- 108 (304)
Q Consensus 32 ~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~-- 108 (304)
-.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++..-.++..|+++... . ++++...+.....+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~g-~---~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEHG-V---RLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEccc-c---EEEeccCCceeEEecc
Confidence 35666655 5667777889999998866422 122 33445555555555566665433 2 45666443331111
Q ss_pred -eccceeeceeeeEEcCCCCEEEEEeC-----------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 109 -KKDSILFGATSVDFSVSGRLLFAGYN-----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 109 -~~~~~~~~~~~~~~s~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
.........+...+.|+|.+.+.... -|.++.+|. .+....-+..+-..-+.|+||||++.+..+-.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 11111122356677888876665332 133555553 22333334444556688999999987776544
Q ss_pred C-CceEEEEeeecC--C----ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCceeeEEeeccccceE
Q psy4754 177 D-TTLRCRLFDLRA--D----KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHENRVS 248 (304)
Q Consensus 177 d-~~i~i~~~d~~~--~----~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-~i~iwd~~~~~~~~~~~~h~~~i~ 248 (304)
. +.+ +.|++.. + +........ .....-.++...+|.+-+++..+| .|..|+.. ++++..+.-+...++
T Consensus 183 ~~~~i--~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 183 PANRI--HRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred CCCeE--EEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 3 443 3444431 1 111111111 011234566778888876554444 89999987 888888888878899
Q ss_pred EEEEcc-CC-CEEEEeec
Q psy4754 249 CLQVSP-DG-TAFSSGSW 264 (304)
Q Consensus 249 ~l~~sp-~g-~~lasgs~ 264 (304)
+++|-- +. ..++|++.
T Consensus 259 ~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 259 NPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cceEeCCCcCEEEEEecC
Confidence 999954 33 45555544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0041 Score=56.14 Aligned_cols=185 Identities=19% Similarity=0.116 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCEEEEe---eCC-CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCe
Q psy4754 29 ATSVDFSVSGRLLFAG---YND-YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg---~~d-g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~ 103 (304)
+..-+|+|+++.++-- ... ..+.++++.+++....+. -.+.-..-+|+|||+.|+ +...|+...+.+.|+...+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 4556788988754322 222 458999998876443322 223333568999998554 6667888888899988766
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeC-CCe--EEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC-Cc
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYT--INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TT 179 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d-~~ 179 (304)
..+ +...... -..=.|+|||+.++-.+. .|. |.+++....+. ..+.-....-..-.++|||+.++..+.. +.
T Consensus 274 ~~~-Lt~~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 274 LPR-LTNGFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred cee-cccCCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 333 2211111 123458999998877654 444 44445554432 2222111122255789999998877743 33
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
..+.+.|+.++.....+.... ......+.|+|..++..+
T Consensus 350 ~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 350 WDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEec
Confidence 334566665554333332211 112345677777666543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.023 Score=50.82 Aligned_cols=228 Identities=18% Similarity=0.173 Sum_probs=124.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-------------------------------------------eeeee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-------------------------------------------RVNHL 64 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-------------------------------------------~~~~~ 64 (304)
.|+.+.|+++..-|+.|-..|.|-||....++ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998889999999999999842210 01112
Q ss_pred cCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc------eeeceeeeEEc-----CCC---CEEE
Q psy4754 65 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS------ILFGATSVDFS-----VSG---RLLF 130 (304)
Q Consensus 65 ~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~------~~~~~~~~~~s-----~~~---~~l~ 130 (304)
....++|++++.|.= -+++.|..+|.+ .+.|++....+..-.... ....++++.|+ .|+ -.++
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l--~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSL--VVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEE--EEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcE--EEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 234589999999743 488899999985 689998766554422211 01124455554 222 4788
Q ss_pred EEeCCCeEEEecCCc--cccc-----eeccCcccceeEEE-EcCC---------------------CcEEEEeecCCceE
Q psy4754 131 AGYNDYTINVWDSLK--CCRV-----NHLMGHENRVSCLQ-VSPD---------------------GTAFSSGSWDTTLR 181 (304)
Q Consensus 131 sg~~dg~i~iwd~~~--~~~~-----~~~~~h~~~v~~v~-~sp~---------------------~~~las~s~d~~i~ 181 (304)
.|.+.|.+.+|.+.. +... .....+.++|..+. |+.+ ..+++.++ +..+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i- 237 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI- 237 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE-
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce-
Confidence 899999999998642 1111 11124556665554 3221 01344444 3443
Q ss_pred EEEeeecCCceEEEeecCceeeeeeEEEE-----cCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccc----cceEEEEE
Q psy4754 182 CRLFDLRADKEVACYKKDSILFGATSVDF-----SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE----NRVSCLQV 252 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~----~~i~~l~~ 252 (304)
+++...+.+.......... .+..+.+ ...+..|++-..+|.|++|.+...+++....-+. ..+....+
T Consensus 238 -rv~~~~~~k~~~K~~~~~~--~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 238 -RVFKPPKSKGAHKSFDDPF--LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp -EEE-TT---EEEEE-SS-E--EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred -EEEeCCCCcccceeecccc--ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 5777766665444332212 2233334 2357778888899999999999887777665432 34566778
Q ss_pred ccCCCEEEEee
Q psy4754 253 SPDGTAFSSGS 263 (304)
Q Consensus 253 sp~g~~lasgs 263 (304)
+++|..+.-.+
T Consensus 315 s~~Gdi~~~~g 325 (395)
T PF08596_consen 315 SRNGDIFYWTG 325 (395)
T ss_dssp -TTS-EEEE-S
T ss_pred CCCCCEEEEeC
Confidence 99998776554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.3e-05 Score=73.58 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=103.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc-eEEEEeeecCC-ceE
Q psy4754 116 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT-LRCRLFDLRAD-KEV 193 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~-i~i~~~d~~~~-~~~ 193 (304)
..++++|+.+.++++.|+-.|.|++++..++.......+|...|+-+.-+.||....+.+.-.. + ..+|++.+. ...
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl-saLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL-SALWDASSTGGPR 1181 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch-HHHhccccccCcc
Confidence 3579999999999999999999999999999888889999999999999999977665544333 3 358987652 223
Q ss_pred EEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe-ec---cccceEEEEEccCCCEEEE
Q psy4754 194 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MG---HENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 194 ~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~-~~---h~~~i~~l~~sp~g~~las 261 (304)
+.|.. ..++.|+...+.-+.|.....+.+||+.++.++.++ .+ ....=++..|||+...+.-
T Consensus 1182 Hsf~e------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1182 HSFDE------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred ccccc------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 33332 256778877776667776678999999998776652 22 1222377889998776653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.025 Score=47.19 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=100.0
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEec
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd 142 (304)
.+.+-...++.|+|.|+.+.|++-...... +...+. +++.++.++.... ...-.+++..++.++++--.++.+.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~-~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGE-IYELSL-DGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTE-EEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCE-EEEEcC-CCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 344555679999999988777766654432 334443 3556665554321 1134677777776666655688898887
Q ss_pred CCcccc------ceec-----cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecC---CceEEEeec------Ccee
Q psy4754 143 SLKCCR------VNHL-----MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA---DKEVACYKK------DSIL 202 (304)
Q Consensus 143 ~~~~~~------~~~~-----~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~---~~~~~~~~~------~~~~ 202 (304)
+..... ...+ ..++..+..++|+|.++.|..+-..... .++.+.. ...+..... ....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPK--RLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSE--EEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCCh--hhEEEccccCccceeecccccccccccee
Confidence 632111 1111 1244568999999987776666555443 3565543 222211110 1112
Q ss_pred eeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCceeeEEeeccc---------cceEEEEEccCCCEEEEe
Q psy4754 203 FGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHE---------NRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 203 ~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~---------~~i~~l~~sp~g~~lasg 262 (304)
..+.++.++|.. ++++-......+..+| .+++.+..+.-.. ...-.|+|.++|+.++++
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 346788898874 5666677778888898 5666555433211 246789999999887775
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.1e-05 Score=68.43 Aligned_cols=243 Identities=15% Similarity=0.159 Sum_probs=143.9
Q ss_pred eeEEEEcC--CCCEEEEeeCCCcEEEEeCCCcee--eeeecCCcCcEEEEEECC-CCCeEEEEe----CCCceEEEEeee
Q psy4754 29 ATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSP-DGTAFSSGS----WDTTLRCRLFDL 99 (304)
Q Consensus 29 i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~-d~~~l~sgs----~D~~i~~~~wd~ 99 (304)
+.|+++.- +..+++.|..+|.|-+-....-.- -....+|..+.++++|++ |.++|+.|- .|-. +.+||+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~--~~Iwdi 136 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS--LKIWDI 136 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC--ccceec
Confidence 56777654 346889999999999988643211 223456778899999998 667777763 1333 358999
Q ss_pred CCC--eeEe--EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEe
Q psy4754 100 RAD--KEVA--CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSG 174 (304)
Q Consensus 100 ~~~--~~~~--~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~ 174 (304)
.+. .+.. .+.. ....+..++.+-.+.+.+++|.....+.++|++...... ..-.+..+..+..+| .+.++++-
T Consensus 137 ~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceecc
Confidence 765 2211 1111 123345577777888899999999999999987432111 111234567788888 67788876
Q ss_pred ecCCceEEEEee-ecCCce-EEEe--ecCceeeeeeEEEEcCCCC-EEEEEeC-CCcEEEEeCCCc---------eeeEE
Q psy4754 175 SWDTTLRCRLFD-LRADKE-VACY--KKDSILFGATSVDFSVSGR-LLFAGYN-DYTINVWDSLKC---------CRVNH 239 (304)
Q Consensus 175 s~d~~i~i~~~d-~~~~~~-~~~~--~~~~~~~~~~~~~~s~~g~-~l~sg~~-d~~i~iwd~~~~---------~~~~~ 239 (304)
+ |+.+ .+|| .+..+. +... ........+..++|.|... .+++... .++|+.+|+..- ..+..
T Consensus 215 ~-dg~i--AiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 215 S-DGDI--AIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred c-cCce--eeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 6 6664 6899 444332 1111 1111112357889998743 3444444 478999985320 00111
Q ss_pred ee----ccc---cceEEEEEccCC--CEEEEeecCCeeeeccccccch
Q psy4754 240 LM----GHE---NRVSCLQVSPDG--TAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 240 ~~----~h~---~~i~~l~~sp~g--~~lasgs~D~~i~~~~~~~~~~ 278 (304)
.. .|. ..|.+..|++.. .....+....++..++...++.
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e~~~ 339 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHEEVI 339 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccchhhee
Confidence 00 133 356777777644 3445555566666665544443
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=60.85 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=79.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee--E
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE--V 105 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~--~ 105 (304)
+.-=.++..+++++-|++-|.+.+|+-..++... ...+-...+..+..+++..+++.|+..+.| .++-+....+ .
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V--~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRV--SVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceE--EeehhhccCCCcc
Confidence 3333455678999999999999999988775443 233344556677888888888888877765 3444433221 1
Q ss_pred eEEeccc--eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 106 ACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 106 ~~~~~~~--~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
....... +...++++.|++++..+++|...|+|.+-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111111 123478999999999999999999999987765
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.053 Score=48.52 Aligned_cols=218 Identities=18% Similarity=0.180 Sum_probs=137.0
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC---CCceEEEEeeeCCCeeE
Q psy4754 30 TSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW---DTTLRCRLFDLRADKEV 105 (304)
Q Consensus 30 ~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~---D~~i~~~~wd~~~~~~~ 105 (304)
..++.++.+. .+++...+..|.+.|..+....+...--. .-..++++++++.+..+.. +++ +.+.|-.+.+.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~--vsvid~~t~~~~ 153 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNT--VSVIDAATNKVT 153 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCce--EEEEeCCCCeEE
Confidence 4567777776 66677778999999977665555432111 4457899999986665544 344 466777766666
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCccccce-e---ccCcccceeEEEEcCCCcEEEEeecCC-c
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVN-H---LMGHENRVSCLQVSPDGTAFSSGSWDT-T 179 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~-~---~~~h~~~v~~v~~sp~~~~las~s~d~-~ 179 (304)
....... ....++++|+++.++... .++.|.+.|........ + ...-......+.++|+++.+...-... .
T Consensus 154 ~~~~vG~---~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 154 ATIPVGN---TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEecCC---CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 5532211 125788999999777765 68999999965543331 1 112223456788999998655443332 1
Q ss_pred eEEEEeeecCCceEEE-eecCceeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCceeeEEeeccc---cceEEEEEcc
Q psy4754 180 LRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHE---NRVSCLQVSP 254 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~~~~~~~~~~~h~---~~i~~l~~sp 254 (304)
..+...|..+...... ..... . ....+.++|+|.++-+... .+.+.+-|..+........... ..+..+++.+
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred ceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 2245778777665544 22221 1 2356789999998777644 4789999988776665544332 2355666655
Q ss_pred C
Q psy4754 255 D 255 (304)
Q Consensus 255 ~ 255 (304)
.
T Consensus 309 ~ 309 (381)
T COG3391 309 L 309 (381)
T ss_pred e
Confidence 4
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0034 Score=54.34 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=68.4
Q ss_pred EEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC-CC
Q psy4754 50 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GR 127 (304)
Q Consensus 50 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~ 127 (304)
|+..+..+...+.-+.+|...|+.++|+|..+ ++..++.+..| .+.|+.+......+.... .+-+++|..+ .+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nki--ki~dlet~~~vssy~a~~---~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKI--KIMDLETSCVVSSYIAYN---QIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceE--EEEecccceeeeheeccC---CceeeeeccCCcc
Confidence 55555555555554566778899999999877 78888999886 689998877766554432 2456777765 45
Q ss_pred EEEEEeCCCeEEEecCCccc
Q psy4754 128 LLFAGYNDYTINVWDSLKCC 147 (304)
Q Consensus 128 ~l~sg~~dg~i~iwd~~~~~ 147 (304)
+++.|...|.|.+||++..+
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeEEeccCceEEEEEccCCC
Confidence 68889999999999988643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00033 Score=38.88 Aligned_cols=38 Identities=37% Similarity=0.563 Sum_probs=32.0
Q ss_pred eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd 98 (304)
+.+..+..|...|.+++|.++++.+++++.|+.+ ++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~--~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTI--KLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeE--EEcC
Confidence 4455667889999999999999999999999985 6775
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.041 Score=45.87 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=102.2
Q ss_pred cceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-
Q psy4754 27 FGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK- 103 (304)
Q Consensus 27 ~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~- 103 (304)
..++.++|.|+. .+++.....+.|...+. +|+.++.+.-. .+-...|++..++.++++.-.++.+ .+.++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L--~~~~~~~~~~ 98 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRL--YIFTIDDDTT 98 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEE--EEEEE----T
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcE--EEEEEecccc
Confidence 348999999975 57778888899988887 47777665322 2456788888888777776556665 455552211
Q ss_pred --eE---eEEecc---ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc---cccc--------eeccCcccceeEEEE
Q psy4754 104 --EV---ACYKKD---SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK---CCRV--------NHLMGHENRVSCLQV 164 (304)
Q Consensus 104 --~~---~~~~~~---~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~---~~~~--------~~~~~h~~~v~~v~~ 164 (304)
.. ..++.. ....+.-.++|.+.++.|+.+-......+|.+.. ...+ .........+.++++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11 111110 1112345789999888888887776666765432 1111 111123345789999
Q ss_pred cCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc-------eeeeeeEEEEcCCCCEEEEEe
Q psy4754 165 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-------ILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 165 sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~~g~~l~sg~ 221 (304)
+|....+..-|..+.. +..+| .+++.+..+.... .....-.++|.++|.+++++-
T Consensus 179 ~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 179 DPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp ETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred cCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 9976665555655543 34677 4455544443221 122467899999998887764
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.073 Score=47.65 Aligned_cols=258 Identities=14% Similarity=0.161 Sum_probs=147.5
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe-E
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-F 83 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~-l 83 (304)
+-+++..+.+......... ....+...+++..+ ++-.....+..-+............-...-..++.++.++. +
T Consensus 13 ~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR---GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC---CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence 4455666655443333221 34567778888533 33322224555444321111111111122346788888874 4
Q ss_pred EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---CCeEEEecCCccccceeccCccccee
Q psy4754 84 SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
+....+..+ .+.|....+.......-. ....++++++++.++.+.. ++.+.+.|..+...+.+...-..+ .
T Consensus 90 v~~~~~~~v--~vid~~~~~~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~ 163 (381)
T COG3391 90 VTTGDSNTV--SVIDTATNTVLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-T 163 (381)
T ss_pred EecCCCCeE--EEEcCcccceeeEeeecc---CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-c
Confidence 444444554 677866555554433221 2357889999988888765 689999998877766654332233 8
Q ss_pred EEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeec---CceeeeeeEEEEcCCCCEEEEEeCC---CcEEEEeCCC
Q psy4754 161 CLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLK 233 (304)
Q Consensus 161 ~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~sg~~d---~~i~iwd~~~ 233 (304)
.++++|+++.+..+. .++.+ .+.|........ ... .........+.++|+|+++...... +.+...|..+
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v--~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTV--SVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred eEEECCCCCeEEEEecCCCeE--EEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 899999999666555 55554 577866554442 110 1111234678899999965543333 5898899887
Q ss_pred ceeeEE-eeccccceEEEEEccCCCEEEEeec-CCeeeeccccc
Q psy4754 234 CCRVNH-LMGHENRVSCLQVSPDGTAFSSGSW-DTTLRDEESKN 275 (304)
Q Consensus 234 ~~~~~~-~~~h~~~i~~l~~sp~g~~lasgs~-D~~i~~~~~~~ 275 (304)
+..... ...-......++++|+|..+-.... ...+.+-+...
T Consensus 241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 765554 1111114566899999988776633 35666555433
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.013 Score=57.57 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=99.6
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecC--CceE-
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA--DKEV- 193 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~--~~~~- 193 (304)
+.++.|..+...++.+..+|.|.+-|..+.. ......-...|.+++|+||++.++..+.++++.+.-+++.- .+.+
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~ 149 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD 149 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc
Confidence 5678888888889999999999999866532 21222234579999999999999988888876443232110 0011
Q ss_pred ------------------EEeecCc-------------------eeeeeeEEEEcCCCCEEEEE----eCC-CcEEEEeC
Q psy4754 194 ------------------ACYKKDS-------------------ILFGATSVDFSVSGRLLFAG----YND-YTINVWDS 231 (304)
Q Consensus 194 ------------------~~~~~~~-------------------~~~~~~~~~~s~~g~~l~sg----~~d-~~i~iwd~ 231 (304)
..+++.. ....-+++.|--||+++|+. ..+ ++|+|||-
T Consensus 150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr 229 (1265)
T KOG1920|consen 150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR 229 (1265)
T ss_pred cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence 0111000 00112458899999999882 223 78999996
Q ss_pred CCceeeEEeec-cccceEEEEEccCCCEEEEe---ecCCeeeeccccccch
Q psy4754 232 LKCCRVNHLMG-HENRVSCLQVSPDGTAFSSG---SWDTTLRDEESKNRYM 278 (304)
Q Consensus 232 ~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasg---s~D~~i~~~~~~~~~~ 278 (304)
. +. +..... -.+-=.+++|-|.|..+|+- +.|..|.+++. ++..
T Consensus 230 E-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~ 277 (1265)
T KOG1920|consen 230 E-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLR 277 (1265)
T ss_pred c-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcc
Confidence 5 32 222211 12233579999999999975 34567888873 4443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.094 Score=49.56 Aligned_cols=191 Identities=16% Similarity=0.087 Sum_probs=98.0
Q ss_pred ceeEEEEcCCCCEEEEee------CCCcEEEEeCC-CceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC
Q psy4754 28 GATSVDFSVSGRLLFAGY------NDYTINVWDSL-KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~------~dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
.+...+++|+|+.+|.-- .|..-.||=.. .+.......+. ..+.-.|+|||+.|.+.+....+ .++.+-.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~-~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTV-VRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcce-EEEeccC
Confidence 377899999998776443 34444555432 22222222332 36778999999888777643232 2333322
Q ss_pred CCeeEeEEecc------ceeeceeeeEEcCCCCEEEEEeCCCeEEE---ecCCccc-cc---eec-cCcccceeEEEEcC
Q psy4754 101 ADKEVACYKKD------SILFGATSVDFSVSGRLLFAGYNDYTINV---WDSLKCC-RV---NHL-MGHENRVSCLQVSP 166 (304)
Q Consensus 101 ~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~sg~~dg~i~i---wd~~~~~-~~---~~~-~~h~~~v~~v~~sp 166 (304)
...++.....+ .....+..+.+||||..++... ++.|.+ -....+. .+ ..+ .+-...+..+.|.+
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 22222221111 0112478899999999888765 467766 2222222 11 112 12333467889999
Q ss_pred CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcE
Q psy4754 167 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 226 (304)
Q Consensus 167 ~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i 226 (304)
++.++ .+..+....++..++...... .+.......++.+++-+++ . +.....++.+
T Consensus 507 ~~~L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g~~ 562 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-T-VYVTDARAVL 562 (591)
T ss_pred CCEEE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-e-EEEEcCCceE
Confidence 98755 444433322344455433322 1223223345566666653 3 3333444433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.1 Score=49.37 Aligned_cols=212 Identities=15% Similarity=0.094 Sum_probs=108.5
Q ss_pred CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEe------CCCceEEEEeeeCCCeeEeEEeccceeeceeee
Q psy4754 47 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS------WDTTLRCRLFDLRADKEVACYKKDSILFGATSV 120 (304)
Q Consensus 47 dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~ 120 (304)
+|.+.-.+-...+++....+....+...+++|||+.++..- .|..-.+++++..... ....... ....-
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~----~~t~P 402 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH----SLTRP 402 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC----CCCCc
Confidence 66665554333333333333345678899999999776544 2444445666653222 1111111 12456
Q ss_pred EEcCCCCEEEEEeCC------------CeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE-eee
Q psy4754 121 DFSVSGRLLFAGYND------------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL-FDL 187 (304)
Q Consensus 121 ~~s~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~-~d~ 187 (304)
.|+|+++.+.+.... +.+.+.++..+.... .....|..+.|||||..+|... ++.+.+-. ...
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeC
Confidence 799998877666432 222222332221111 2345799999999999888765 45543211 222
Q ss_pred cCCce-EEE---eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceeeEEeec--cccceEEEEEccCCCEEE
Q psy4754 188 RADKE-VAC---YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMG--HENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 188 ~~~~~-~~~---~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~~~~~~--h~~~i~~l~~sp~g~~la 260 (304)
..+.. +.. +.. .....+.+++|.+++.++ .+..++...+|.+.- +.....+.+ ...++.+|+=++. .+++
T Consensus 479 ~~G~~~l~~~~~l~~-~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv 555 (591)
T PRK13616 479 EDGQYALTNPREVGP-GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYV 555 (591)
T ss_pred CCCceeecccEEeec-ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEE
Confidence 23321 100 111 111124678999999965 545555555564321 111111122 3567788877763 4443
Q ss_pred EeecCCeeeec
Q psy4754 261 SGSWDTTLRDE 271 (304)
Q Consensus 261 sgs~D~~i~~~ 271 (304)
+ ..++.+++-
T Consensus 556 ~-~~~g~~~l~ 565 (591)
T PRK13616 556 T-DARAVLQLP 565 (591)
T ss_pred E-cCCceEEec
Confidence 3 445656554
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.056 Score=50.90 Aligned_cols=218 Identities=7% Similarity=0.036 Sum_probs=103.0
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC------CcEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d------g~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
.+..||+.+++-....+....... .+++ ..++.+++.||.+ ..+..||+.+.+ .+..+........ ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EE
Confidence 467789888753221111111111 1222 2367788888864 347788877653 2222211111111 22
Q ss_pred CCCCCeEEEEeCCCce---EEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC------------------
Q psy4754 77 SPDGTAFSSGSWDTTL---RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND------------------ 135 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i---~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d------------------ 135 (304)
.-+++..+.||.++.. .+..||..+.+-...............+ ..++...+.|+.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccc
Confidence 2357777888876431 2456776543221111111011111112 2356666666654
Q ss_pred -----CeEEEecCCcc--ccceeccCcccceeEEEEcCCCcEEEEeecCCc---e-EEEEeeecC-CceEE--EeecCce
Q psy4754 136 -----YTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---L-RCRLFDLRA-DKEVA--CYKKDSI 201 (304)
Q Consensus 136 -----g~i~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i-~i~~~d~~~-~~~~~--~~~~~~~ 201 (304)
..+..||..+. +.+..+.........+++ ++++++.|+.++. . .+..||.++ .+... ..+....
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 34777886553 233322211111112222 5778888876421 1 135688876 44432 2221111
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKC 234 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~--~i~iwd~~~~ 234 (304)
....+ .-+|+.+++|+.++ .+..||..+.
T Consensus 505 --~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 505 --ALHTI--LHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred --cceeE--EECCEEEEEeeecceeehhhcCcccc
Confidence 11111 23788888998777 6777876653
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00089 Score=53.74 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=87.7
Q ss_pred EEEEeCCCeEEEecCCccccceeccCcccceeEE-EEcCCCcEEEEeecCCceEEEEeeecCCce-EEEeecCceeeeee
Q psy4754 129 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL-QVSPDGTAFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGAT 206 (304)
Q Consensus 129 l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v-~~sp~~~~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~ 206 (304)
+..-++++.|+-++++....-.. ....+.++ ....-+..++.|+.|+.+.++.|++..... ........+ .+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r---se~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i---~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR---SERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI---DL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhh---hhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccc---ee
Confidence 34456678887777654321110 01112222 112234578889999998776676433211 111111111 12
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccc-cceEEEEEccCCCEEEEe--ecCCeeeeccccc
Q psy4754 207 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSG--SWDTTLRDEESKN 275 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~lasg--s~D~~i~~~~~~~ 275 (304)
.+.-..++.+..++..++.|+.|+....+.+.....|. .++..+..+..++.++.. |+|+.++.|+..+
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 33334556688889999999999998877777666677 677778788788889988 9999999997643
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.15 Score=46.18 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-------eeeecCCcCcEEEEEEC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-------VNHLMGHENRVSCLQVS 77 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~-------~~~~~~h~~~V~~l~~s 77 (304)
.|+||+..+.. +..+.... ..+-++.|..+..++ .-..||++++||+. |+. +....-....+....+.
T Consensus 62 ~I~iys~sG~l-l~~i~w~~--~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKL-LSSIPWDS--GRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCE-eEEEEECC--CCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC
Confidence 49999988764 44444443 569999998865544 55699999999985 333 11111122223333444
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecccee------e-cee-eeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL------F-GAT-SVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~------~-~~~-~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
.+|-.++++. +.+ ..+-+.......+........ . ... ...++.+....+....++.+.+.+.....
T Consensus 137 ~~GivvLt~~--~~~-~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~-- 211 (410)
T PF04841_consen 137 KNGIVVLTGN--NRF-YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK-- 211 (410)
T ss_pred CCCEEEECCC--CeE-EEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--
Confidence 4565555543 222 122222211011111000000 0 000 12244455555555556666644422211
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEE
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 218 (304)
.+ ...+++..+++||+++++|.-..++.+ ++....-.+....+.... ...+..+.|.-++..++
T Consensus 212 -~i-~~~~~i~~iavSpng~~iAl~t~~g~l--~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 212 -QI-DSDGPIIKIAVSPNGKFIALFTDSGNL--WVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVL 275 (410)
T ss_pred -cc-cCCCCeEEEEECCCCCEEEEEECCCCE--EEEECcccceeEEeecCc-CCCCcEEEEECCCcEEE
Confidence 11 123579999999999999988888885 345433333444443331 11234555655544333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00064 Score=64.00 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=76.8
Q ss_pred EEEcCCCcEEEEee----cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 162 LQVSPDGTAFSSGS----WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 162 v~~sp~~~~las~s----~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
.+|+|...+||.++ ..|++ .+| ++++++.... ..+..+++++|+|..-.|+.|..-|.+.+|...+.+..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSV--tIf-adtGEPqr~V---t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSV--TIF-ADTGEPQRDV---TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceE--EEE-ecCCCCCccc---ccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 35677666666554 23443 344 2233321111 11234578999999999999999999999987776555
Q ss_pred EEeeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 238 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
..-..|..+|..+.|||+|..++|+..=+.+-+|.++
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5556699999999999999999999888999999765
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0038 Score=57.76 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=90.5
Q ss_pred EcCCCCEEEEEeCCCeEEEecCCcccccee-ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc--e-EEE-e
Q psy4754 122 FSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK--E-VAC-Y 196 (304)
Q Consensus 122 ~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~--~-~~~-~ 196 (304)
++..+++++.|+..|.+.+|+-..+..... ..+-.+.+.....+++...+|.|+..+.|. ++-+.... . +.. .
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~--v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVS--VFQLNKELPRDLDYVTP 118 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEE--eehhhccCCCcceeecc
Confidence 456688999999999999998655543322 223334556667899998999999888764 44333221 1 111 1
Q ss_pred ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc----eeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 197 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
....+...|++++|++++..+.+|...|+|..-.+... .....+..-...|..|.+. ++..|++-.
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 11223456899999999999999999999988765541 1122333445677778775 455555543
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.095 Score=43.27 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=44.9
Q ss_pred CceeEEeeccccceEeeeecccccccee-EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGAT-SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~-~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.+.+.+.+.++|+.--++.... .|. .....+++.++..|+.|++...-|..+..++...+.-..-..+-++.|
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~---~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILE---TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred cCcEEEEEecchhheeeeeehh---hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 4556777788875432332211 222 234457899999999999999999988776655543322223344555
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.12 Score=45.71 Aligned_cols=220 Identities=16% Similarity=0.099 Sum_probs=110.5
Q ss_pred cCCCCEEEEe---------eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 35 SVSGRLLFAG---------YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 35 ~~~g~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
|||+++++.. +..+...+||+.+++...... ....+....|+|+|+.++-.. ++. +.+++...+...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~n--ly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNN--LYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTE--EEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCc--eEEEECCCCCeE
Confidence 4667665542 334689999999875443322 256788899999999888775 445 467777665332
Q ss_pred eEEeccc---------------e-eeceeeeEEcCCCCEEEEEe-CCCeEEEecCCccccceeccCcc---cceeEEEEc
Q psy4754 106 ACYKKDS---------------I-LFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHE---NRVSCLQVS 165 (304)
Q Consensus 106 ~~~~~~~---------------~-~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~---~~v~~v~~s 165 (304)
.+..+. . ...-..+-||||+++|+..- ++..|..+.+. ...... ..+..+.+-
T Consensus 77 -~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YP 149 (353)
T PF00930_consen 77 -QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYP 149 (353)
T ss_dssp -ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--
T ss_pred -EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee------ccCCccccCCcccccccC
Confidence 222221 0 11124577999999988753 23444443321 111111 123444432
Q ss_pred CCCcEEEEeecCCceEEEEeeecCCceEEE-ee--cCceeeeeeEEEEcCCCC-EEEE-EeCCC---cEEEEeCCCceee
Q psy4754 166 PDGTAFSSGSWDTTLRCRLFDLRADKEVAC-YK--KDSILFGATSVDFSVSGR-LLFA-GYNDY---TINVWDSLKCCRV 237 (304)
Q Consensus 166 p~~~~las~s~d~~i~i~~~d~~~~~~~~~-~~--~~~~~~~~~~~~~s~~g~-~l~s-g~~d~---~i~iwd~~~~~~~ 237 (304)
.- |...-.+.+.++|+.+++.... .. .......+..+.|.++++ +++. -..+. .+.+.|..++..-
T Consensus 150 k~------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~ 223 (353)
T PF00930_consen 150 KA------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETR 223 (353)
T ss_dssp BT------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCE
T ss_pred CC------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCcee
Confidence 22 2223445567889887765321 11 011123467889999999 4444 33333 3445676554332
Q ss_pred EEee-ccccce---EEEEEc-cCCCEEE-EeecCCeeeec
Q psy4754 238 NHLM-GHENRV---SCLQVS-PDGTAFS-SGSWDTTLRDE 271 (304)
Q Consensus 238 ~~~~-~h~~~i---~~l~~s-p~g~~la-sgs~D~~i~~~ 271 (304)
..+. ...++| ....|. +++..++ ....|+--.++
T Consensus 224 ~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 224 VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred EEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 1121 122333 355554 6665444 44466654444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=57.78 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=66.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEE-EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS-CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
..+.-+.|+|.-.++|++..+|.+.+...+ -+++-++.-|...|+ +++|.|||+.|+.|-.||+| ++.|+..+..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I--~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTI--RLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeE--EEEEccCCCce
Confidence 346779999999999999999999999988 667777776777777 99999999999999999996 68999877665
Q ss_pred eE
Q psy4754 106 AC 107 (304)
Q Consensus 106 ~~ 107 (304)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 43
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.13 Score=43.06 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=89.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
|.+.||.+|+.+++.+...+.+...++ -.++.. ++++..-.-.++...+||..+.+.+.++. ..+.=+.|+ .|++
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~Fg-EGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~ 140 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRYFG-EGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGK 140 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT--E-EEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSS
T ss_pred CcEEEEEEECCCCcEEEEEECCccccc-eeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCC
Confidence 567899999999988766665544443 222222 34566667789999999999988888774 234555666 4565
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEecc---ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec------
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL------ 152 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~------ 152 (304)
.|+.+ ||+-+++.+|..+-+....++.. ......+-+.+- +|...|=.-....|...|..++.....+
T Consensus 141 ~Li~S--DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~ 217 (264)
T PF05096_consen 141 RLIMS--DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLR 217 (264)
T ss_dssp CEEEE---SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHH
T ss_pred EEEEE--CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhh
Confidence 55543 44545678887665554443211 111112334443 3433333444555556666665433211
Q ss_pred ---c---Cc---ccceeEEEEcCCCcE-EEEe
Q psy4754 153 ---M---GH---ENRVSCLQVSPDGTA-FSSG 174 (304)
Q Consensus 153 ---~---~h---~~~v~~v~~sp~~~~-las~ 174 (304)
. .+ .+-.+.+++.|+... ++||
T Consensus 218 ~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 218 PEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred hcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 0 01 234689999887655 4454
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0022 Score=58.60 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=65.3
Q ss_pred eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE-EEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS-CLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~-~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
..+..+.|+|.-.++|.+..+|.+-+.... .+++.++.-|..+++ +++|.|||+.||.|=.||+|++-|..++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 456788999999999999999999998876 778888887888888 99999999999999999999999887654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.02 Score=55.16 Aligned_cols=134 Identities=20% Similarity=0.160 Sum_probs=83.5
Q ss_pred eCCCeEEEecCCccccceeccCcccc-eeEEEEcCCC-------cEEEEeecCCceEEEEeeecCCceEEEe-ec--Cce
Q psy4754 133 YNDYTINVWDSLKCCRVNHLMGHENR-VSCLQVSPDG-------TAFSSGSWDTTLRCRLFDLRADKEVACY-KK--DSI 201 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~-------~~las~s~d~~i~i~~~d~~~~~~~~~~-~~--~~~ 201 (304)
.....++-.|+..++.+.+...|... |..+ .|+. +....|-.+..+ ..||.|-.....+. .. -..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~l--friDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSL--FRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCce--EEeccCCCCCceeecccccccc
Confidence 44678888899999888887766543 4444 4421 223334445554 57998764321111 11 011
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-EeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.....+++-+.+| +||.|+.+|.||+||-. +..-+ .+.+-..+|.+|..+.||++|+.-. +..+-|.+.
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 2235666666666 67889999999999943 23332 3556678999999999999876433 566666653
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.23 Score=44.88 Aligned_cols=116 Identities=20% Similarity=0.205 Sum_probs=70.5
Q ss_pred eeEEEEcCCCCEEEEe-eCC----CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC---------ceEE
Q psy4754 29 ATSVDFSVSGRLLFAG-YND----YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT---------TLRC 94 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg-~~d----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~---------~i~~ 94 (304)
+....++|+|+++|-+ +.. .+++++|+.+++.+..... ...-..+.|.+|++.|+-...|. --++
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4578899999987633 444 4599999999976653211 11122499999998776666544 4446
Q ss_pred EEeeeCCCeeE--eEEeccceeeceeeeEEcCCCCEEEEEeC---C-CeEEEecCCc
Q psy4754 95 RLFDLRADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYN---D-YTINVWDSLK 145 (304)
Q Consensus 95 ~~wd~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---d-g~i~iwd~~~ 145 (304)
+.|.+.+...- ..++.....+-...+..++++++++.... + ..+.+.|+..
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 77888765432 34443322221346778999998776432 2 3466667665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.087 Score=45.91 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=78.7
Q ss_pred ceeEEeecccc----ceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-eeeeec-CCcCcEEEEEEC
Q psy4754 4 NHCRLFDLRAD----KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLM-GHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~~~~----~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-~~~~~~-~h~~~V~~l~~s 77 (304)
+.|.++++... ..+...........|+++.-- ++. |+.| ....|.+|++...+ ....-. ...-.+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 77999999984 222222222223447777654 444 4333 34789999987766 332211 122355666554
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
+++++.|-.-+.+.+.-|+.. ...+.....+.....++++.|-++++.++.+..+|.+.++...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~-~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEE-NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETT-TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred --ccEEEEEEcccCEEEEEEEcc-CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 568888877777655556653 3334333333333346677777566789999999999998643
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.22 Score=44.00 Aligned_cols=252 Identities=20% Similarity=0.151 Sum_probs=98.8
Q ss_pred eeccccceEeeeeccc-cccc--eeEEEEcCCCC-EEEEeeCCCcEEEE--eCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 9 FDLRADKEVACYKKDS-ILFG--ATSVDFSVSGR-LLFAGYNDYTINVW--DSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 9 wd~~~~~~~~~~~~~~-~~~~--i~~~~~~~~g~-~l~tg~~dg~v~iw--d~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
-|..||..+-.+.... +.+. -+.=.|.++|+ +|.++..||.-.+| |+.+++..+--.+-.+......++|+++.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 3777776554333221 1111 23346778886 45566667665555 56676544432322122224566787777
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe----------------------CCCeEEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------------------NDYTINV 140 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~----------------------~dg~i~i 140 (304)
++=-...+.+ +-.|+.+.+....+.......+.-......++..++..- ....|..
T Consensus 95 ~~Yv~~~~~l--~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 95 LYYVKNGRSL--RRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEETTTEE--EEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred EEEEECCCeE--EEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 6544444453 567777766555444332211111122234454443221 0111222
Q ss_pred ecCCccccceeccCcccceeEEEEcCCC-cEEEEee---cCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCC
Q psy4754 141 WDSLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGS---WDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGR 215 (304)
Q Consensus 141 wd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s---~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~ 215 (304)
.|+.+++. ..+..-+..+..+.|+|.. .+++-|- +|. |-.|+|-+++. +.......+.....+.-=-|.|||.
T Consensus 173 idl~tG~~-~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~-Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGER-KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDL-VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--E-EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTT-SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred EECCCCce-eEEEecCccccCcccCCCCCCEEEEeccCCcce-eceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 23333321 2222233456678899854 4555543 232 11145544332 2222222222111122233789998
Q ss_pred EEEEEe-----CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 216 LLFAGY-----NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 216 ~l~sg~-----~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
.|.--+ .+..|.-+|+.+++... +. ...+-..+-.++||+.+|-=+.|.
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~-~~p~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRR-LM-EMPWCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEE-EE-EE-SEEEEEE-TTSSEEEEEE---
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceE-EE-eCCceeeeEEcCCCCEEEecCCCC
Confidence 766522 23356667887765432 22 223455677789999998655553
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.24 Score=46.75 Aligned_cols=222 Identities=16% Similarity=0.214 Sum_probs=110.8
Q ss_pred cCCCCEEEEeeCCC------cEEEEeCCCceee--eeecCCcCcEEEEEECCCCCeEEEEeCC-Cc---eEEEEeeeCCC
Q psy4754 35 SVSGRLLFAGYNDY------TINVWDSLKCCRV--NHLMGHENRVSCLQVSPDGTAFSSGSWD-TT---LRCRLFDLRAD 102 (304)
Q Consensus 35 ~~~g~~l~tg~~dg------~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~d~~~l~sgs~D-~~---i~~~~wd~~~~ 102 (304)
+..+.+++.||.++ .+..||+.+++-. ..+. +.-.-.++++. ++...++||.| +. -.+..+|....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33456778888874 7889998876322 2222 22223344444 35788889888 22 22345666544
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe-----EEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEee
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-----INVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~-----i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
+-....+....... ..++ .-+|...+.|+.||. +..||..+.+ .+..+.......-.+. -+|+..+.||
T Consensus 360 ~W~~~a~M~~~R~~-~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG 435 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSD-FGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGG 435 (571)
T ss_pred ceeccCCccCcccc-ceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcC
Confidence 32211111110000 1111 234666667777754 6667755432 2221111111122222 2788899998
Q ss_pred cCCce----EEEEeeecCCceEEEe--ecCceeeeeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCce--eeEEeec
Q psy4754 176 WDTTL----RCRLFDLRADKEVACY--KKDSILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCC--RVNHLMG 242 (304)
Q Consensus 176 ~d~~i----~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~l~sg~~d~-----~i~iwd~~~~~--~~~~~~~ 242 (304)
.++.- .+..||..+.+....- .......+ .-.-++..++.|+.|+ +|..||..+.+ .+..+..
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g----~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG----VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccce----EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 76653 2346776665542221 11111111 1233677888887665 37778876532 3322322
Q ss_pred cccceEEEEEccCCCEEEEeecCCee
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
....+-..++ ++..++.|+.|+.-
T Consensus 512 ~rs~~g~~~~--~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 512 PRSAVGVVVL--GGKLYAVGGFDGNN 535 (571)
T ss_pred ccccccEEEE--CCEEEEEecccCcc
Confidence 3333333333 67889999988643
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.19 Score=42.03 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=110.7
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
-.+.+.|..++.++-|.+.-+.-+++.+|+.+++...........++ -.++... ++.....-.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg-EGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG-EGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E-EEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc-eeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 35678887788888888887776789999999887766555443333 2333332 334444567899999999887776
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEee---cCceeeeeeEEEEcCCCCEEEEEeCCCcE
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK---KDSILFGATSVDFSVSGRLLFAGYNDYTI 226 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~sg~~d~~i 226 (304)
.++. ..+.=+.++. |++.++.. |++-+++.+|..+-+....+. ........+.+.+- +|...|=......|
T Consensus 124 ~~~~-y~~EGWGLt~--dg~~Li~S--DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 124 GTFP-YPGEGWGLTS--DGKRLIMS--DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEE--SSS--EEEE--CSSCEEEE---SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEe-cCCcceEEEc--CCCEEEEE--CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 6653 3345567764 45555544 333335678876655443332 22222345666664 67766666666677
Q ss_pred EEEeCCCceeeEEeec------------c---ccceEEEEEccC-CCEEEEe
Q psy4754 227 NVWDSLKCCRVNHLMG------------H---ENRVSCLQVSPD-GTAFSSG 262 (304)
Q Consensus 227 ~iwd~~~~~~~~~~~~------------h---~~~i~~l~~sp~-g~~lasg 262 (304)
-..|..+|+.+..+.- + ..-.+.|||.|+ ++.++||
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7788888887665431 1 245789999875 4567777
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.037 Score=50.26 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=75.7
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEe-eecCCceEEE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF-DLRADKEVAC 195 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~-d~~~~~~~~~ 195 (304)
+..+.++|++++++.++ +|.-.++....... ...+.-...+|.+.+ .+|+-...++|. ++ ++.... ...
T Consensus 35 p~~ls~npngr~v~V~g-~geY~iyt~~~~r~-----k~~G~g~~~vw~~~n-~yAv~~~~~~I~--I~kn~~~~~-~k~ 104 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN-----KAFGSGLSFVWSSRN-RYAVLESSSTIK--IYKNFKNEV-VKS 104 (443)
T ss_dssp -SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE-----EEEEE-SEEEE-TSS-EEEEE-TTS-EE--EEETTEE-T-T--
T ss_pred CeeEEECCCCCEEEEEc-CCEEEEEEccCCcc-----cccCceeEEEEecCc-cEEEEECCCeEE--EEEcCcccc-ceE
Confidence 45788999999888854 66666766322211 112445667898855 466666567664 43 332211 111
Q ss_pred eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 196 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
++... .+..+ |. |.+|...+.+ .|.+||..++..++++.- .+|..+.|+++|.++|-.+.| ++.+.+.+.
T Consensus 105 i~~~~---~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 105 IKLPF---SVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ---SS----EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred EcCCc---ccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 21111 12222 33 8888877654 899999999999988863 348999999999999988755 555554444
Q ss_pred c
Q psy4754 276 R 276 (304)
Q Consensus 276 ~ 276 (304)
+
T Consensus 175 ~ 175 (443)
T PF04053_consen 175 E 175 (443)
T ss_dssp H
T ss_pred h
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.4 Score=44.45 Aligned_cols=261 Identities=13% Similarity=0.083 Sum_probs=131.4
Q ss_pred CceeEEeeccccceEeeeecccc---c-cce--eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC-----cE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI---L-FGA--TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-----RV 71 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~---~-~~i--~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~-----~V 71 (304)
++++.-.|..+++++=....... . ..+ ..++.. ++..++.++.+|.|.-+|..+|+.+=.+..... .+
T Consensus 70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i 148 (488)
T cd00216 70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTM 148 (488)
T ss_pred CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEe
Confidence 46677788888877533222111 0 000 011111 225677788899999999999876644322111 01
Q ss_pred E-EEEECCCCCeEEEEeC---------CCceEEEEeeeCCCeeEeEEecccee-ec------------------eeeeEE
Q psy4754 72 S-CLQVSPDGTAFSSGSW---------DTTLRCRLFDLRADKEVACYKKDSIL-FG------------------ATSVDF 122 (304)
Q Consensus 72 ~-~l~~s~d~~~l~sgs~---------D~~i~~~~wd~~~~~~~~~~~~~~~~-~~------------------~~~~~~ 122 (304)
. +..+. +..++.++. ++. +.-.|..+++.+..++..... .. -.+..+
T Consensus 149 ~ssP~v~--~~~v~vg~~~~~~~~~~~~g~--v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~ 224 (488)
T cd00216 149 TGAPTIV--KKLVIIGSSGAEFFACGVRGA--LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTY 224 (488)
T ss_pred cCCCEEE--CCEEEEeccccccccCCCCcE--EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeE
Confidence 1 11222 234444432 344 355677777777765432100 00 012344
Q ss_pred cCCCCEEEEEeCCC------------------eEEEecCCccccceecc--Ccc--------cce-eEEEEcCCCc---E
Q psy4754 123 SVSGRLLFAGYNDY------------------TINVWDSLKCCRVNHLM--GHE--------NRV-SCLQVSPDGT---A 170 (304)
Q Consensus 123 s~~~~~l~sg~~dg------------------~i~iwd~~~~~~~~~~~--~h~--------~~v-~~v~~sp~~~---~ 170 (304)
.+.+..++.++.++ .+...|+.+++..=++. .|. .++ ..+. .-++. .
T Consensus 225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~ 303 (488)
T cd00216 225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPA 303 (488)
T ss_pred eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEE
Confidence 45566777776554 68888988876543221 121 011 0110 01232 4
Q ss_pred EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE-----------------eCCCcEEEEeCCC
Q psy4754 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-----------------YNDYTINVWDSLK 233 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-----------------~~d~~i~iwd~~~ 233 (304)
++.++.++.+ ...|.++++.+=...... ..++.+| +..++.. ..++.+.-.|..+
T Consensus 304 V~~g~~~G~l--~ald~~tG~~~W~~~~~~-----~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 304 IVHAPKNGFF--YVLDRTTGKLISARPEVE-----QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEECCCceE--EEEECCCCcEeeEeEeec-----cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 6677778774 567888877643322110 1122333 2222211 1245666677777
Q ss_pred ceeeEEeecc--c------cce--EEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 234 CCRVNHLMGH--E------NRV--SCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 234 ~~~~~~~~~h--~------~~i--~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
++.+-+.... . .+. ..++. .+..|..++.|+.|..+|.+.+-..
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCcee
Confidence 7665443321 0 111 12222 4567778889999988877665433
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.083 Score=51.65 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=73.0
Q ss_pred CCCEEEEeeCCCcEEEEeCCCcee-eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecccee-
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL- 114 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~- 114 (304)
.+..++.|++.|.+...|+...-. ...-..-..+|++++|+.+|+.++.|-.+|.| .+||...++.++.+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V--~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHV--TVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcE--EEEEccCCcceeeeeecCCcc
Confidence 456789999999999999865411 12222335799999999999999999999985 68999998888877654321
Q ss_pred eceeeeEEcCCCCEEEEEeCCCeEEEec
Q psy4754 115 FGATSVDFSVSGRLLFAGYNDYTINVWD 142 (304)
Q Consensus 115 ~~~~~~~~s~~~~~l~sg~~dg~i~iwd 142 (304)
.++.-+.+..++..++++...|. +|.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 22333445556667888877775 565
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.00069 Score=61.84 Aligned_cols=168 Identities=21% Similarity=0.289 Sum_probs=108.3
Q ss_pred CCEEEEEeCCCeEEEecCCccc--cceeccCcccceeEEEEcC-CCcEEEEeec----CCceEEEEeeecCC----ceEE
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSP-DGTAFSSGSW----DTTLRCRLFDLRAD----KEVA 194 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp-~~~~las~s~----d~~i~i~~~d~~~~----~~~~ 194 (304)
...++.|.++|.|-+-..+..- .-....+|..+.++++|++ |.+++|.|-. |..+ .+||..+. +...
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~--~Iwdi~s~ltvPke~~ 147 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL--KIWDINSLLTVPKESP 147 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCc--cceecccccCCCcccc
Confidence 3467778888999887654321 1223456777889999988 5567777642 3343 58998664 1111
Q ss_pred EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceeeEEeeccccceEEEEEcc-CCCEEEEeecCCeeeecc
Q psy4754 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 195 ~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~ 272 (304)
.+.. ....+..+++|-.+.+++.+|...+.++++|+.. ......+ ....+..+...| .+.++++-+ |+.|.+||
T Consensus 148 ~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 148 LFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeecc
Confidence 1222 1223456788888999999999999999999762 1112112 123445577788 677887766 99999998
Q ss_pred -ccc--cchhheeeccccCCceeEEEEEec
Q psy4754 273 -SKN--RYMQYLLRSRITKPTQGLTVYFQD 299 (304)
Q Consensus 273 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 299 (304)
+.+ .+++...+.-.+||++=.+++-.|
T Consensus 224 ~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 224 TYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred chhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 322 455666667777777767776666
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.28 Score=40.00 Aligned_cols=222 Identities=12% Similarity=0.111 Sum_probs=112.5
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeee-ecCCcCcEEEEEECCCC--CeEEEEeCCCceEEEEeeeCCCe--eEeE---Eec
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDG--TAFSSGSWDTTLRCRLFDLRADK--EVAC---YKK 110 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d~--~~l~sgs~D~~i~~~~wd~~~~~--~~~~---~~~ 110 (304)
.++..-=..|.|.-||..+....+. +.+ .++.++.+.-.+ +..+.+..-+.+ +..||.-... ..++ .+.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~-i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFV-IVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEE-EEEcccccceeeeeeeccccCc
Confidence 4454544567787899876543332 221 223344443333 223332223333 4567744222 1111 111
Q ss_pred cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc--------cceeEEEEcCCCcEEE-EeecCCceE
Q psy4754 111 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE--------NRVSCLQVSPDGTAFS-SGSWDTTLR 181 (304)
Q Consensus 111 ~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~--------~~v~~v~~sp~~~~la-s~s~d~~i~ 181 (304)
+....-.+.-..+|+|++++-..+|..- ..+...+....-+.+|. +--+.++|+.+.+.|. +-+.+-+|.
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 1100112344578999885443333221 11111111111122333 2234678887776655 444455543
Q ss_pred EEEeeecCCc-----eEEEeecCcee--eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 182 CRLFDLRADK-----EVACYKKDSIL--FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 182 i~~~d~~~~~-----~~~~~~~~~~~--~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
.+-||..++. .+..++..+.. ...-.++...+|.+.++.-..++|...|..+++.+.+++-....|+|++|--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 2333354432 23222221100 0123445566899999999999999999999999999999999999999963
Q ss_pred C--CCEEEEeec
Q psy4754 255 D--GTAFSSGSW 264 (304)
Q Consensus 255 ~--g~~lasgs~ 264 (304)
- ..+++|...
T Consensus 264 kn~d~~yvT~aa 275 (310)
T KOG4499|consen 264 KNLDILYVTTAA 275 (310)
T ss_pred CCccEEEEEehh
Confidence 3 234555544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0088 Score=35.80 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=28.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~ 59 (304)
..|++++|+|...+||.|..+|.|.+|.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 34899999999999999999999999998 443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.075 Score=51.36 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=87.6
Q ss_pred CEEE-EeeCCCcEEEEeCCCceeeeeecCCcCc-EEEEEECCCC-------CeEEEEeCCCceEEEEeeeCCCe-eEeEE
Q psy4754 39 RLLF-AGYNDYTINVWDSLKCCRVNHLMGHENR-VSCLQVSPDG-------TAFSSGSWDTTLRCRLFDLRADK-EVACY 108 (304)
Q Consensus 39 ~~l~-tg~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~-------~~l~sgs~D~~i~~~~wd~~~~~-~~~~~ 108 (304)
.+|+ .......+.--|++.|+.+.....|.+. |.. +.|+. ...+.|-.+..+ ..||.+... .+..-
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~l--friDpR~~~~k~v~~ 569 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSL--FRIDPRLSGNKLVDS 569 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCce--EEeccCCCCCceeec
Confidence 3443 4456688999999999998888777654 554 44532 334556566664 679987543 22110
Q ss_pred ec-cce-eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 109 KK-DSI-LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 109 ~~-~~~-~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
+. ... ....++++-+.+| ++|.|+.+|.||+||-.....-..+.+-..+|.+|..+.||++++..+ +..+ .+++
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyL--lLi~ 645 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYL--LLID 645 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceE--EEEE
Confidence 11 000 0113455555554 799999999999999432222233567778999999999999866443 4443 3555
Q ss_pred e
Q psy4754 187 L 187 (304)
Q Consensus 187 ~ 187 (304)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 3
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.17 Score=36.27 Aligned_cols=95 Identities=22% Similarity=0.377 Sum_probs=56.2
Q ss_pred EEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEE-----EEeeeCCCeeEe
Q psy4754 33 DFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-----RLFDLRADKEVA 106 (304)
Q Consensus 33 ~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~-----~~wd~~~~~~~~ 106 (304)
.|..+| ..|+.|+.|..||+|+-.. .+..+. -.+.|++|.-... ..++-+-..|+|.+ |+|.++++.+.
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRiKSK~~~- 83 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRIKSKNQV- 83 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeeeccCCCe-
Confidence 344444 4789999999999999653 333332 2466777776665 56777777888643 34444433322
Q ss_pred EEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEE
Q psy4754 107 CYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINV 140 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~i 140 (304)
.......+..||. .|++|-.+|.|.+
T Consensus 84 --------~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 84 --------TSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --------EEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1122223333332 6888888887754
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0043 Score=49.92 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=81.3
Q ss_pred EEEEeeCCCcEEEEeCCCcee-eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-eEeEEeccceeece
Q psy4754 40 LLFAGYNDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGA 117 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~~~~~ 117 (304)
.+..-+.||.|+-+++..... .+...-|...-..+.+ +.-++.|+.|+.+.++.|++...- ...+...+...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~--- 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID--- 105 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhhcccccce---
Confidence 344556788888777643221 1111112222111222 456888899999887777743211 11111111111
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc-cceeEEEEcCCCcEEEEe--ecCCceEEEEeeecCCc
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSG--SWDTTLRCRLFDLRADK 191 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~--s~d~~i~i~~~d~~~~~ 191 (304)
+.+....++.+.+++..++.|+.|++...+.+.....|+ .++.....+..++.++.. |.|..+ +.|++....
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~--k~W~ve~~~ 180 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVL--KKWNVEKIK 180 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhh--hhcchhhhh
Confidence 122222345578889999999999988777666666676 555555555556666666 667664 477765543
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.066 Score=48.41 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=85.1
Q ss_pred EEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcE-------EEEeecCCceEEEEeeecCC-c-eEEEeecC
Q psy4754 129 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-------FSSGSWDTTLRCRLFDLRAD-K-EVACYKKD 199 (304)
Q Consensus 129 l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-------las~s~d~~i~i~~~d~~~~-~-~~~~~~~~ 199 (304)
+.++.....++--|+..++.+.+..-|.+ |+-+.+.|+.+. -..|-.|..+ .-||.|-. . .+..-+.+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~v--friDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSV--FRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCce--EEecccccCcceeeeeecc
Confidence 34456667777778888887777666655 777788886542 2234455654 46887621 1 11111111
Q ss_pred c--eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-EeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 200 S--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 200 ~--~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+ ......|.+-..+ -++|+|+.+|.|++||- .+...+ .+.+-..+|..|..+.||..|+.- -+..+-+-+.
T Consensus 426 qy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred ccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 1 1122344443333 47889999999999995 333332 366778899999999999977533 3566655544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.46 Score=39.96 Aligned_cols=215 Identities=16% Similarity=0.098 Sum_probs=107.3
Q ss_pred EEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCc-eeeeeecCCcCcEEEEEECCCC
Q psy4754 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 7 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d-----g~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
-++|.++..+..........|----=.|||||.+|++.-.| |.|=|||...+ +.+..+..|.-.--.+.+.+||
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC
Confidence 46777777553333222111111223589999999877554 88999998643 4455555665555578899999
Q ss_pred CeEEEEeCCCceEEE------EeeeCCCeeEeEE---------ecc-----ceeeceeeeEEcCCCCEEEEEeCCCeE--
Q psy4754 81 TAFSSGSWDTTLRCR------LFDLRADKEVACY---------KKD-----SILFGATSVDFSVSGRLLFAGYNDYTI-- 138 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~------~wd~~~~~~~~~~---------~~~-----~~~~~~~~~~~s~~~~~l~sg~~dg~i-- 138 (304)
+.++.+.. -|... --|+.+.++...+ +++ ....++.-++..+||..++.+-..|.-
T Consensus 174 rtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d 251 (366)
T COG3490 174 RTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRND 251 (366)
T ss_pred cEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCcc
Confidence 98776532 12111 1122222221111 111 111234455666666544443211110
Q ss_pred ---EEecCCcccccee-------ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEE
Q psy4754 139 ---NVWDSLKCCRVNH-------LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSV 208 (304)
Q Consensus 139 ---~iwd~~~~~~~~~-------~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
.+=-..+++++.- ......+|-+++.+-+..+++..|-.+... .+||..++..+..-...+ +..+
T Consensus 252 ~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~-vi~da~tG~vv~~a~l~d----aaGv 326 (366)
T COG3490 252 LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA-VIWDAATGAVVSEAALPD----AAGV 326 (366)
T ss_pred CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE-EEEEcCCCcEEecccccc----cccc
Confidence 0000011111111 112335677788887667777777666653 589999987654322111 1122
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q psy4754 209 DFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 209 ~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.+...=++..+.+|.|.++.
T Consensus 327 --a~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 327 --AAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred --eeccCceEEecCCceEEecc
Confidence 22333334444567777663
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.016 Score=56.32 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=67.7
Q ss_pred CcEEEEeecCCceEEEEeeecCCceEE-EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccc
Q psy4754 168 GTAFSSGSWDTTLRCRLFDLRADKEVA-CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 246 (304)
Q Consensus 168 ~~~las~s~d~~i~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 246 (304)
+..++.|+.-+++ ...|.... +. -........+|++++|+.+|..++.|-.+|.|.+||..++..++.+..|..+
T Consensus 99 ~~~ivi~Ts~ghv--l~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHV--LLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeEEEEcCchhh--hhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 3456666666654 45665542 11 1233444568999999999999999999999999999998888887776655
Q ss_pred eEEE---EEccCCCEEEEeecCCe
Q psy4754 247 VSCL---QVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 247 i~~l---~~sp~g~~lasgs~D~~ 267 (304)
...+ .+..++..+.++-.-|.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc
Confidence 4443 44556677778766664
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.26 Score=46.52 Aligned_cols=180 Identities=7% Similarity=-0.066 Sum_probs=87.4
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCce--eeeeecCCcCcEEEEEEC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg-----~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s 77 (304)
++-.||+.+++-....+.........++ ..+|++.+.||.++ ++..||+.+.+ .+..+.........++
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-- 396 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-- 396 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--
Confidence 4777888887422111111111111222 34678888888764 48889987652 2222221111111222
Q ss_pred CCCCeEEEEeCCCc---------------------eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-
Q psy4754 78 PDGTAFSSGSWDTT---------------------LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND- 135 (304)
Q Consensus 78 ~d~~~l~sgs~D~~---------------------i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d- 135 (304)
-+++..+.||.++. -.+..+|..+.+-............ .+++ ..+++..+.|+.+
T Consensus 397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~ 474 (557)
T PHA02713 397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKD 474 (557)
T ss_pred ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCC
Confidence 35777788876532 1133455443321111010000001 1122 2345555556543
Q ss_pred -----CeEEEecCCc---cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce
Q psy4754 136 -----YTINVWDSLK---CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 136 -----g~i~iwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~ 192 (304)
..+..||..+ .+.+..+.........+.+ ++++++.|+.|+...+-.||..+.+.
T Consensus 475 ~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 475 EKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 2467898765 3444444433333333444 77899999988843345677776654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.65 Score=40.72 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeE---Ee-eccccceEEEEEccCCCEEEEeecCCee
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVN---HL-MGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~---~~-~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
.|.++++....+.|...++.+...+. .+ .....++..+++.|||.++++-..++.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 35677776666778777765443322 22 2344589999999999999988777765
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.02 Score=34.23 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=27.9
Q ss_pred eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
..+..++|+|...+||.|..+|.|.++.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 45789999999999999999999999987 444
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.76 Score=39.73 Aligned_cols=141 Identities=14% Similarity=0.077 Sum_probs=75.5
Q ss_pred eeEEEEcCCCCEEEEeeC-----------CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEe-CCCceEEEE
Q psy4754 29 ATSVDFSVSGRLLFAGYN-----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~-----------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs-~D~~i~~~~ 96 (304)
-+-+...|+|.+.++.-. -|.+...|. .+...+.+..|-.--..|+||||++.|+.+- ..+.+ +-
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i--~r 189 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI--HR 189 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE--EE
Confidence 456778888887765433 133444443 3444444444433345799999998666553 33443 33
Q ss_pred eeeCC-----CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC-eEEEecCCccccceeccCcccceeEEEEc-CCCc
Q psy4754 97 FDLRA-----DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHENRVSCLQVS-PDGT 169 (304)
Q Consensus 97 wd~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~ 169 (304)
+++.. .............-..-.++...+|.+.+++..+| .|.+|+.. ++.+..+.-....+++++|- |+.+
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~ 268 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN 268 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence 33331 11110111100000123455667787775544443 89999866 66666665555677888884 4444
Q ss_pred EEEE
Q psy4754 170 AFSS 173 (304)
Q Consensus 170 ~las 173 (304)
.|..
T Consensus 269 ~L~i 272 (307)
T COG3386 269 TLYI 272 (307)
T ss_pred EEEE
Confidence 4443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.87 Score=39.23 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=71.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEE
Q psy4754 116 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 195 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~ 195 (304)
.+..+..++++.+++.+.......-||--...=......-..+|..|.|.|++.+.+.+ ..+.+ +.-+.. .....
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~--~~s~~~--~~~~~ 220 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI--QFSDDP--DDGET 220 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE--EEEE-T--TEEEE
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEE--EEccCC--CCccc
Confidence 35567778999988887766666788743211111122234689999999998876654 66664 233311 11122
Q ss_pred eec-----CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc---eeeEEeeccccceEEEEEccCCCEEEEeec
Q psy4754 196 YKK-----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264 (304)
Q Consensus 196 ~~~-----~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~---~~~~~~~~h~~~i~~l~~sp~g~~lasgs~ 264 (304)
+.. ......+..+++.++++..++|+. |++.. ....+ ++......-.+..+.+.|.++.+-++.|..
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 221 112234678999999988887764 45543 22222 222222223457889999887788888754
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.67 Score=39.91 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=71.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
+..+.-+++|.+++.++.-.-..-||.....-..+.+.-...|..+.|.|++.+.+.+ ..+.+ +.-+... ....+
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~--~~s~~~~--~~~~w 221 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI--QFSDDPD--DGETW 221 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE--EEEE-TT--EEEEE
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEE--EEccCCC--Ccccc
Confidence 6778888999988887555555688865332222234456789999999998876654 66665 3333111 11122
Q ss_pred ec-----cceeeceeeeEEcCCCCEEEEEeCCCeEEE-ecC-CccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 109 KK-----DSILFGATSVDFSVSGRLLFAGYNDYTINV-WDS-LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 109 ~~-----~~~~~~~~~~~~s~~~~~l~sg~~dg~i~i-wd~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
.+ ...-+.+..+++.++++..++|+. |.+.+ =|- .+.++......-...+..|.|.++.+-|+.| .++.+
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~l 298 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVL 298 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEE
Confidence 11 111234568899988877776654 44443 231 2223322222334457778887666667664 46653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.36 Score=40.53 Aligned_cols=99 Identities=21% Similarity=0.142 Sum_probs=60.8
Q ss_pred ceeEEEEcCCCcEEEEee--cCCceEEEEeeecCCceEEEe-ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe-CCC
Q psy4754 158 RVSCLQVSPDGTAFSSGS--WDTTLRCRLFDLRADKEVACY-KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLK 233 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s--~d~~i~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd-~~~ 233 (304)
.+.+.+++++++.+|... .++. .++++. .+...... ... ......|++++...+....+...+++. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~-~L~~~~--~~~~~~~~~~g~----~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGR-SLYVGP--AGGPVRPVLTGG----SLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCC-EEEEEc--CCCcceeeccCC----ccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 678899999999877666 4443 233443 33322222 222 346678999988887777666777763 222
Q ss_pred ceeeE-Eeecc-c-cceEEEEEccCCCEEEEee
Q psy4754 234 CCRVN-HLMGH-E-NRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 234 ~~~~~-~~~~h-~-~~i~~l~~sp~g~~lasgs 263 (304)
+.... ..... . +.|.++++||||..+|--.
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 22111 11111 1 2899999999999888666
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.7 Score=42.15 Aligned_cols=114 Identities=10% Similarity=0.098 Sum_probs=65.8
Q ss_pred cceeEEEEcCCCCEEEEe-----eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC-c---eEEEEe
Q psy4754 27 FGATSVDFSVSGRLLFAG-----YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-T---LRCRLF 97 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg-----~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~---i~~~~w 97 (304)
..+..+.++|||++|+-+ +...++++-|+.++..+........ ..++|++|++.|+-...|. + -+++.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 337788999999987754 2235688888887754322111111 4689999998665544432 2 456788
Q ss_pred eeCCC--eeEeEEeccceeeceeeeEEcCCCCEEEEEe---CCCeEEEecC
Q psy4754 98 DLRAD--KEVACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDS 143 (304)
Q Consensus 98 d~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~---~dg~i~iwd~ 143 (304)
++.+. +....++....... .....+.++++++..+ .++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88776 32333332211111 1333455777765543 3457888874
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.16 Score=46.00 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=85.3
Q ss_pred EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC--eE-----EEEeCCCceEEEEeeeCCCe--eEeEEec
Q psy4754 40 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AF-----SSGSWDTTLRCRLFDLRADK--EVACYKK 110 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~--~l-----~sgs~D~~i~~~~wd~~~~~--~~~~~~~ 110 (304)
+|.++..-..++--|++.|+.+....-|.+ |.-+.+.|+.+ .| +.|=.|..+ .-||.+-.. .+...+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~v--friDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSV--FRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCce--EEecccccCcceeeeeec
Confidence 445777777888889999998887776766 66677888764 22 233345554 558876321 1221121
Q ss_pred ccee--eceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 111 DSIL--FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 111 ~~~~--~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+... ....|.+-.. ..+++.|+.+|.|++||-.....-.-+.+-..+|..|..+.+|++++.. .+..+
T Consensus 425 kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyL 494 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYL 494 (644)
T ss_pred cccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEE
Confidence 1110 0122333333 4589999999999999953222223367777899999999999986643 35554
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.39 Score=34.41 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=62.5
Q ss_pred eeEEEE---cCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 159 VSCLQV---SPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 159 v~~v~~---sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
|++|++ ..|| +.|+.||.|..| |+|+-. +.+..+.... .++++.-... ..++.+...|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~I--Rvf~~~--e~~~Ei~e~~---~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEI--RVFKGD--EIVAEITETD---KVTSLCSLGG-GRFAYALANGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEE--EEEeCC--cEEEEEeccc---ceEEEEEcCC-CEEEEEecCCEEEEEeCc--
Confidence 455554 3344 468899999985 677643 3344443332 3456655555 567888999999999753
Q ss_pred eeeEEeeccccceEEEEEc-cCC---CEEEEeecCCeee
Q psy4754 235 CRVNHLMGHENRVSCLQVS-PDG---TAFSSGSWDTTLR 269 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~s-p~g---~~lasgs~D~~i~ 269 (304)
.++-..+.-.. +.++++. .++ ..|++|-.++.|-
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 34555554333 5555543 343 4789998888764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.88 Score=42.71 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=84.6
Q ss_pred CCCCEEEEeeCCC------cEEEEeCCCceeee--eecCCcCcEEEEEECCCCCeEEEEeCCCce---EEEEeeeCCCee
Q psy4754 36 VSGRLLFAGYNDY------TINVWDSLKCCRVN--HLMGHENRVSCLQVSPDGTAFSSGSWDTTL---RCRLFDLRADKE 104 (304)
Q Consensus 36 ~~g~~l~tg~~dg------~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i---~~~~wd~~~~~~ 104 (304)
.++.+++.||.++ .+..||+.+.+-.. .+.........+. -+++.++.||.+... .+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3566777887653 57788877654221 1111111222222 256777777765321 134566554321
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCC------CeEEEecCCcc--ccceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d------g~i~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
............ .+++ ..++...+.|+.+ ..+..||..+. ..+..+....... +++ ..+++.++.|+.
T Consensus 371 ~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~ 446 (534)
T PHA03098 371 REEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGI 446 (534)
T ss_pred eeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCc
Confidence 111000001111 1122 2345555656521 46788887643 2222221111111 122 235677777775
Q ss_pred CCc------eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q psy4754 177 DTT------LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLK 233 (304)
Q Consensus 177 d~~------i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~ 233 (304)
+.. -.+..||..+.+....-...........+. .+++.++.|+.+ ..+.+||..+
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 321 114678877665432211110001111222 266777776643 3567777654
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.8 Score=41.01 Aligned_cols=218 Identities=16% Similarity=0.202 Sum_probs=102.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC------CcEEEEeCCCce--eeeeecCCcCcEEEEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCC--RVNHLMGHENRVSCLQ 75 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d------g~v~iwd~~~~~--~~~~~~~h~~~V~~l~ 75 (304)
.+|..||+.+++-....+...... -.++++ .++.++++||.| .++..||+.+.+ .+..+...........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEE-ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 458889999884332222222111 233333 356888999999 467778876553 1122221111121112
Q ss_pred ECCCCCeEEEEeCCCceEE---EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC------CeEEEecCCcc
Q psy4754 76 VSPDGTAFSSGSWDTTLRC---RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKC 146 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~---~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d------g~i~iwd~~~~ 146 (304)
-+|...+.||.|+.-.. -.||..+.+--..........+. .+ ...++...++|+.+ ..+..||..+.
T Consensus 379 --l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~-gv-~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 379 --LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH-GV-AVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred --ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeee-EE-EEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 25778888998865321 12443322111000000001111 11 22346666666643 45667776543
Q ss_pred c--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEe--ecCceeeeeeEEEEcCCCCEEEE
Q psy4754 147 C--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACY--KKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 147 ~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+ .+..+..-..... ++. -++.+++.||.|+. -.+..||.++.+....- ..... ..-...-++..+++
T Consensus 455 ~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs----~~g~~~~~~~ly~v 528 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS----AVGVVVLGGKLYAV 528 (571)
T ss_pred ceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc----cccEEEECCEEEEE
Confidence 2 2222221111111 222 26778889988762 12356777776654331 11111 01112235677777
Q ss_pred EeCCC-----cEEEEeCCC
Q psy4754 220 GYNDY-----TINVWDSLK 233 (304)
Q Consensus 220 g~~d~-----~i~iwd~~~ 233 (304)
|+.|+ +|..||..+
T Consensus 529 GG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 529 GGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ecccCccccceeEEcCCCC
Confidence 77665 455565443
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=95.70 E-value=1 Score=37.45 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=75.3
Q ss_pred EEcCCC-CEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEec
Q psy4754 33 DFSVSG-RLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK 110 (304)
Q Consensus 33 ~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~ 110 (304)
-..++. .+++.||..+.+.--|..+|..+= .+- ...+.+-++- -|++++.|...+.+ .+.+++++.+++.+..
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~l--Yfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGL--YFLCVKTGSQIWNFVI 91 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEEccCcE--EEEEecchhheeeeee
Confidence 334443 578899999999998988876442 111 1233332222 26678888887774 6778888877776654
Q ss_pred cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 111 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 111 ~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
.... . ......+++..++.|+.|++.+..|.++..++...
T Consensus 92 ~~~v-k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 92 LETV-K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred hhhh-c-cceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 3221 1 13345678999999999999999999887766543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.3 Score=37.36 Aligned_cols=222 Identities=14% Similarity=0.059 Sum_probs=116.3
Q ss_pred CCCEEEEeeCCCcEEEEeCCC-ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE-----e-
Q psy4754 37 SGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY-----K- 109 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~-----~- 109 (304)
.++.|+.|.++| +.+++... ....+.. +..+|..+...++-+.|+.-+ |+.+ .++++..-...... .
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l--~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQL--YVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCcc--EEEEchhhccccccccccccc
Confidence 467888998888 99999832 2222222 334499999999877666654 5775 57777543222100 0
Q ss_pred ------ccceeeceeeeE--EcCCCCEEEEEeCCCeEEEecCCcc-----ccceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 110 ------KDSILFGATSVD--FSVSGRLLFAGYNDYTINVWDSLKC-----CRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 110 ------~~~~~~~~~~~~--~s~~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
.-....++...+ -...+...+.......|.+|..... ....++ .-...+..++|. ++.++.|..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeC
Confidence 000011122222 1133334444445568888875442 233332 234678889998 446777766
Q ss_pred CCceEEEEeeecCCceEEEeecCcee---------eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE--Eeecccc
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSIL---------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLMGHEN 245 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~~---------~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~--~~~~h~~ 245 (304)
++. .+.|+.++.....+...... .....+---+++++|++- +..-.+.|. .|++.+ .+. -..
T Consensus 157 ~~f---~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~ 229 (275)
T PF00780_consen 157 KGF---YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSS 229 (275)
T ss_pred Cce---EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEE-cCC
Confidence 664 47888765543332211100 111223233456777754 222222332 333332 222 234
Q ss_pred ceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 246 ~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.+.++++. ..+|..-. +..|.+++..++.
T Consensus 230 ~p~~~~~~--~pyli~~~-~~~iEV~~~~~~~ 258 (275)
T PF00780_consen 230 APQSVAYS--SPYLIAFS-SNSIEVRSLETGE 258 (275)
T ss_pred chhEEEEE--CCEEEEEC-CCEEEEEECcCCc
Confidence 55677774 34666554 4669999887763
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.7 Score=40.20 Aligned_cols=185 Identities=10% Similarity=-0.041 Sum_probs=83.1
Q ss_pred CCCCEEEEeeCCC-----cEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 36 VSGRLLFAGYNDY-----TINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 36 ~~g~~l~tg~~dg-----~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
.++.+++.||.++ ++..||+.+++ .+..+.........+ .-+++..+.||.+..-.+..||....+-....
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3456778887653 57778877653 222222111112222 24577777887654323456776543211111
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCC---CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYND---YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
......... ++ ...+++..+.|+.+ ..+..||..+.+ ....+.........++ -++++++.|+. . -
T Consensus 348 ~l~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG~---~--e 418 (480)
T PHA02790 348 SLLKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGRN---A--E 418 (480)
T ss_pred CCCCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECCc---e--E
Confidence 111011111 11 22346666666644 346778765432 2211111111112222 35677777752 2 4
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLK 233 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~ 233 (304)
.||.++.+....-......... ++ ..-+|+.++.|+.+ .++..||..+
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCC
Confidence 6887766543221111000111 11 22366777777643 2455666544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.4 Score=39.36 Aligned_cols=248 Identities=13% Similarity=0.114 Sum_probs=120.7
Q ss_pred CceeEEeeccccceEeeeecccc---cccee-EEEEcCCCCEEEEee---------CCCcEEEEeCCCceeeeeecCC-c
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI---LFGAT-SVDFSVSGRLLFAGY---------NDYTINVWDSLKCCRVNHLMGH-E 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~---~~~i~-~~~~~~~g~~l~tg~---------~dg~v~iwd~~~~~~~~~~~~h-~ 68 (304)
++.|.-+|..+++++=.+..... ...+. +..+. + ..++.++ .+|.+.-+|..+|+.+=.+... .
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~ 196 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEP 196 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCC
Confidence 56788899999988644333221 01111 11221 2 3444443 3678899999888654332211 1
Q ss_pred -------------------CcEE-EEEECCCCCeEEEEeCCCc----------------eEEEEeeeCCCeeEeEEeccc
Q psy4754 69 -------------------NRVS-CLQVSPDGTAFSSGSWDTT----------------LRCRLFDLRADKEVACYKKDS 112 (304)
Q Consensus 69 -------------------~~V~-~l~~s~d~~~l~sgs~D~~----------------i~~~~wd~~~~~~~~~~~~~~ 112 (304)
..|. ..++.+.+..++.++.++. -.+.-.|..+++....++...
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~ 276 (488)
T cd00216 197 DPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP 276 (488)
T ss_pred CcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC
Confidence 1111 2334444556666655541 013457888888877665321
Q ss_pred ee----eceeeeEEc----CCCC---EEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEe-------
Q psy4754 113 IL----FGATSVDFS----VSGR---LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG------- 174 (304)
Q Consensus 113 ~~----~~~~~~~~s----~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~------- 174 (304)
.. .......+. -++. .++.++.+|.+...|..+++.+=+...- ...++.+| +..++..
T Consensus 277 ~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~ 352 (488)
T cd00216 277 HDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGL 352 (488)
T ss_pred CCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccC
Confidence 10 000000111 1232 5777888999999999888765332110 01122233 1111111
Q ss_pred ----------ecCCceEEEEeeecCCceEEEeecCcee------eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 175 ----------SWDTTLRCRLFDLRADKEVACYKKDSIL------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 175 ----------s~d~~i~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
..++. +.-.|+.+++.+=........ .+...-.....+..++.++.|+.++.+|..+++.+-
T Consensus 353 ~~~~~~~~~~~~~G~--l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 353 PPQKKKRCKKPGKGG--LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cccccCCCCCCCceE--EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 01222 223444444432111111000 000000112356788888999999999999999887
Q ss_pred Eeeccccce--EEEEEccCCCEE
Q psy4754 239 HLMGHENRV--SCLQVSPDGTAF 259 (304)
Q Consensus 239 ~~~~h~~~i--~~l~~sp~g~~l 259 (304)
++.-. +.+ .-+.|..+|+.+
T Consensus 431 ~~~~~-~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 431 KFRTP-SGIQATPMTYEVNGKQY 452 (488)
T ss_pred EEECC-CCceEcCEEEEeCCEEE
Confidence 76542 222 223344566443
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.6 Score=38.90 Aligned_cols=142 Identities=16% Similarity=0.095 Sum_probs=76.5
Q ss_pred eeeeEEcCCCCEEEEEe-----------CCC-eEEEecCCcc--c--cceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 117 ATSVDFSVSGRLLFAGY-----------NDY-TINVWDSLKC--C--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~-----------~dg-~i~iwd~~~~--~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
...++|.++|+.+++-. ..+ .|.+++.... . ....+.........+++.+++ .+++. .. .+
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~-~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT-PP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-CC-eE
Confidence 45678888888766642 223 6767654321 1 122333333456889999998 55543 23 23
Q ss_pred EEEEeeecCC-----ce--EE-EeecCc--eeeeeeEEEEcCCCCEEEEEeCC-------------------CcEEEEeC
Q psy4754 181 RCRLFDLRAD-----KE--VA-CYKKDS--ILFGATSVDFSVSGRLLFAGYND-------------------YTINVWDS 231 (304)
Q Consensus 181 ~i~~~d~~~~-----~~--~~-~~~~~~--~~~~~~~~~~s~~g~~l~sg~~d-------------------~~i~iwd~ 231 (304)
.++.|.... +. +. .+.... .....+.+++.|||.++++-+.. +.|.-++.
T Consensus 93 -~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 -LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred -EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 123343221 11 11 122210 11235688999999988874421 33444555
Q ss_pred CCceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 232 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 232 ~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
..++ +..+.........++|+|+|..+++-.
T Consensus 172 dg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence 4433 223332334567899999999988754
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.3 Score=38.31 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=77.5
Q ss_pred eEEcCCCCEEEEEeCCCeEEEecCCcc--ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc-----e
Q psy4754 120 VDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-----E 192 (304)
Q Consensus 120 ~~~s~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~-----~ 192 (304)
+...+++.+++.+.....++-||-... +.+. ..-...+..+.+.+++..++.+ .++.+ ++....++ .
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l---~~S~d~G~~~~~~~ 317 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGL---YVSKGTGLTEEDFD 317 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceE---EEecCCCCcccccc
Confidence 345677777776665555555663221 2221 1223568899999999877665 55654 33333332 1
Q ss_pred EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce---eeEEeeccccceEEEEEccCCCEEEEeec
Q psy4754 193 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDGTAFSSGSW 264 (304)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~---~~~~~~~h~~~i~~l~~sp~g~~lasgs~ 264 (304)
............+..+.|.+++..+++|. .|.+.... ..++ ....-..-..+.+.+.|.++++.+++|..
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 22221111112467888999988877775 56665543 2222 22111223457889999888888888854
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.6 Score=35.84 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=60.1
Q ss_pred EEEECCCCC-eEEEEeCCCceEEEEeeeCCCee-----EeEEecccee--eceeeeEEcCCCCEEEEEeCCCeEEEecCC
Q psy4754 73 CLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKE-----VACYKKDSIL--FGATSVDFSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 73 ~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~-----~~~~~~~~~~--~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
.|+|..|.+ ..+.-+.+.++..+-+|..++.. +.-+++.... .-.-..++..+|.+.++..+.++|...|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 578887766 44556667665333333444322 1111221000 001234456678888999999999999999
Q ss_pred ccccceeccCcccceeEEEEcC
Q psy4754 145 KCCRVNHLMGHENRVSCLQVSP 166 (304)
Q Consensus 145 ~~~~~~~~~~h~~~v~~v~~sp 166 (304)
+++.+.++.-.+..|++++|-.
T Consensus 242 tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecC
Confidence 9999988887888999999954
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.1 Score=37.61 Aligned_cols=225 Identities=15% Similarity=0.036 Sum_probs=108.2
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEE-EeeCC----------CcEEEEeCCCceee--eeecCCcCc
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYND----------YTINVWDSLKCCRV--NHLMGHENR 70 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~-tg~~d----------g~v~iwd~~~~~~~--~~~~~h~~~ 70 (304)
.+++++|+.+++.+.-.- .......+.|.++++.|+ +...+ ..|+.|.+.+...- ..+......
T Consensus 150 ~~l~v~Dl~tg~~l~d~i---~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGI---ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP 226 (414)
T ss_dssp EEEEEEETTTTEEEEEEE---EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT
T ss_pred EEEEEEECCCCcCcCCcc---cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC
Confidence 359999999997754211 111223499999987654 44222 23788887665322 223333333
Q ss_pred --EEEEEECCCCCeEEEEeC-CCc-eEEEEeeeCCC----eeEeEEeccceeeceeeeEEcCCCCEEEEE---eCCCeEE
Q psy4754 71 --VSCLQVSPDGTAFSSGSW-DTT-LRCRLFDLRAD----KEVACYKKDSILFGATSVDFSVSGRLLFAG---YNDYTIN 139 (304)
Q Consensus 71 --V~~l~~s~d~~~l~sgs~-D~~-i~~~~wd~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg---~~dg~i~ 139 (304)
...+..++|+++|+..+. ..+ -.+++.|+... .....+..... ++....-+..+.+++.. ...+.|.
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~--~~~~~v~~~~~~~yi~Tn~~a~~~~l~ 304 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED--GVEYYVDHHGDRLYILTNDDAPNGRLV 304 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS--S-EEEEEEETTEEEEEE-TT-TT-EEE
T ss_pred cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC--ceEEEEEccCCEEEEeeCCCCCCcEEE
Confidence 567899999998764433 333 34677777653 22222222110 11111112233333332 2346666
Q ss_pred EecCCcccc---ceeccCccc--ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC
Q psy4754 140 VWDSLKCCR---VNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 214 (304)
Q Consensus 140 iwd~~~~~~---~~~~~~h~~--~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g 214 (304)
..++..... ...+..|.. .+..+... .+.+++.-..++.-+++++++..+........... ..+..+...+++
T Consensus 305 ~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~ 382 (414)
T PF02897_consen 305 AVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA-GSVSGVSGDFDS 382 (414)
T ss_dssp EEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS-SEEEEEES-TT-
T ss_pred EecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc-eEEeccCCCCCC
Confidence 667665442 113445554 34555543 23456666777777778888882233222222111 123344444555
Q ss_pred CEEEE--EeCC--CcEEEEeCCCce
Q psy4754 215 RLLFA--GYND--YTINVWDSLKCC 235 (304)
Q Consensus 215 ~~l~s--g~~d--~~i~iwd~~~~~ 235 (304)
+.+.. .+-- .++.-||+.+++
T Consensus 383 ~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 383 DELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCC
Confidence 44332 2211 356666666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.8 Score=35.86 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=120.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCC------Ccee-eeeecC-----CcCcEEEEEECCCCCe------------EE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSL------KCCR-VNHLMG-----HENRVSCLQVSPDGTA------------FS 84 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~------~~~~-~~~~~~-----h~~~V~~l~~s~d~~~------------l~ 84 (304)
--.++|+|.+.+-++....+...+||.. ..+. .-++.. -....+.+.|+..... ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4579999999988888888999999986 1111 222221 1235667777643333 56
Q ss_pred EEeCCCceEEEEeeeCCCee-----EeEEec--cceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcc
Q psy4754 85 SGSWDTTLRCRLFDLRADKE-----VACYKK--DSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 85 sgs~D~~i~~~~wd~~~~~~-----~~~~~~--~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
.++.|++| .-|...-... ...+.. ....+.-..+.-...+.+|+.+ ...++|.++|-. ..++..-....
T Consensus 105 f~tEdGTi--saW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~ 181 (336)
T TIGR03118 105 FVTEDGTL--SGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFI 181 (336)
T ss_pred EEeCCceE--EeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCcc
Confidence 67789986 4577422211 112211 1223332333333446677665 457999999842 22221100111
Q ss_pred cc-------------------eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC-----
Q psy4754 157 NR-------------------VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV----- 212 (304)
Q Consensus 157 ~~-------------------v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~----- 212 (304)
++ |+...-.+++.-=+.|..-+. |-+||+.. ..++.+.........+.++..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~--VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY--VNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce--EEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCC
Confidence 11 111111222211111111122 45676653 4444454444445566777654
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCceeeEEeeccc------cceEEEEEcc
Q psy4754 213 -SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE------NRVSCLQVSP 254 (304)
Q Consensus 213 -~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~------~~i~~l~~sp 254 (304)
.|.+|+---.||+|..||..+++.+..+.... ...+.|+|-.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 47788887789999999998888777776643 3467888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.2 Score=37.52 Aligned_cols=101 Identities=23% Similarity=0.212 Sum_probs=65.4
Q ss_pred EEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCc
Q psy4754 161 CLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKC 234 (304)
Q Consensus 161 ~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~ 234 (304)
.++|+|.- ..++.+-.=++. ..++|....+...+......-...-.-.|||||++|-+...| |.|=|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf-~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTF-AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCce-EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 46666643 345555555665 357887766654444322111111223499999998775444 67889998653
Q ss_pred -eeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 235 -CRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 235 -~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
+.+.++..|.-....+.+.+||+.++.+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEe
Confidence 3566777887777889999999998876
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.5 Score=39.35 Aligned_cols=153 Identities=11% Similarity=0.085 Sum_probs=85.5
Q ss_pred ccccceeEEEEcCCCCEEEEee--CCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC----eEEEEeCCCceEEEEe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGY--NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT----AFSSGSWDTTLRCRLF 97 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~----~l~sgs~D~~i~~~~w 97 (304)
...|.+..++|....+.++|.- ..|.++.=|. ..+.. -..|..++|+|-+. .|+.....+. +.+|
T Consensus 17 qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkh--VtVW 87 (671)
T PF15390_consen 17 QAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKH--VTVW 87 (671)
T ss_pred hhhccccceEecCCCEEEEEeeeeeCCccccCCc---cEeec----cceeeeeeecCcccCCCCceEEEeccce--EEEE
Confidence 4456688999974444555652 3444444332 22333 34588999998532 4555555555 4678
Q ss_pred eeCCC-----eeE----eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCC
Q psy4754 98 DLRAD-----KEV----ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPD 167 (304)
Q Consensus 98 d~~~~-----~~~----~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~ 167 (304)
.+... +.+ ..+.. ....-...+.|+|....|+.-..+..-.+.+.... .++.--..-.+-|.|.+|.+|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e-~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIRE-PFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred EeccCccccccceeeeeeeccC-CcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 87521 111 11111 00011346789998887776555544445554322 223222244577999999999
Q ss_pred CcEEEEeecCCceEEEEeee
Q psy4754 168 GTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 168 ~~~las~s~d~~i~i~~~d~ 187 (304)
|+.++.+-. ..++.++||-
T Consensus 167 G~RLVVAvG-SsLHSyiWd~ 185 (671)
T PF15390_consen 167 GQRLVVAVG-SSLHSYIWDS 185 (671)
T ss_pred CCEEEEEeC-CeEEEEEecC
Confidence 988665432 2556678874
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.1 Score=37.14 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=75.9
Q ss_pred EEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCC--CeeEeEEeccceee--ceeeeEEcC
Q psy4754 50 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRA--DKEVACYKKDSILF--GATSVDFSV 124 (304)
Q Consensus 50 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~--~~~~~~~~~~~~~~--~~~~~~~s~ 124 (304)
--+||+.+++........+....+-++-+||++|.+|+. |+.-.+++++... ...-..-....... --.++..-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 348888877543221223344445578899999999986 5554466777543 01111000000000 011344568
Q ss_pred CCCEEEEEeCC-CeEEEecCCcc-cccee--ccCc------ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE
Q psy4754 125 SGRLLFAGYND-YTINVWDSLKC-CRVNH--LMGH------ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194 (304)
Q Consensus 125 ~~~~l~sg~~d-g~i~iwd~~~~-~~~~~--~~~h------~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~ 194 (304)
||+.++.|+.. .+..+|.-... ..... +... ..-=..+...|+|+.|+.+..+.. ++|..+.+.+.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~----i~d~~~n~v~~ 203 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI----IYDYKTNTVVR 203 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE----EEeCCCCeEEe
Confidence 89988887765 34566653211 11111 1100 011124567899999999887653 68887776554
Q ss_pred Ee
Q psy4754 195 CY 196 (304)
Q Consensus 195 ~~ 196 (304)
.+
T Consensus 204 ~l 205 (243)
T PF07250_consen 204 TL 205 (243)
T ss_pred eC
Confidence 44
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.70 E-value=3.1 Score=33.56 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=91.7
Q ss_pred EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-eeeceeeeEEcCCCCEEEE-EeCCCeEEEecCCccccce
Q psy4754 73 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~~~ 150 (304)
.+..- +|.++.|.+.=+.-+++.||+.+++.+..-+... ..++- .+. .-+..+.. .-.+|....+|..+.+.+.
T Consensus 50 GL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgE-Git--~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 50 GLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGE-GIT--KLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred ceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccc-cee--eccceEEEEEeccceeEEEChHHhhhhc
Confidence 34443 4567777776666678999999888876654431 12210 111 11333433 4568889999988766554
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce---EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEE
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 227 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~ 227 (304)
.+. .++.=+.++. |++.+..+....++ ..-|.++-.. +.+--........+.+.| -+|..+|-...+..|-
T Consensus 126 ~~~-y~GeGWgLt~--d~~~LimsdGsatL--~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~ 199 (262)
T COG3823 126 RFS-YEGEGWGLTS--DDKNLIMSDGSATL--QFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIA 199 (262)
T ss_pred ccc-cCCcceeeec--CCcceEeeCCceEE--EecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceE
Confidence 432 2334445543 55555555434443 3334332211 111111111111122222 2455555544444444
Q ss_pred EEeCCCceeeEEee------------ccccceEEEEEccCC-CEEEEe
Q psy4754 228 VWDSLKCCRVNHLM------------GHENRVSCLQVSPDG-TAFSSG 262 (304)
Q Consensus 228 iwd~~~~~~~~~~~------------~h~~~i~~l~~sp~g-~~lasg 262 (304)
..|..+++.+..+. .|..-.+.+|+.|++ +.++||
T Consensus 200 rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 200 RIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 45555554443322 244567889999976 677776
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.1 Score=34.22 Aligned_cols=149 Identities=20% Similarity=0.160 Sum_probs=79.3
Q ss_pred cEEEEEECCCCCeEEEEe--CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEec-CCcc
Q psy4754 70 RVSCLQVSPDGTAFSSGS--WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKC 146 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs--~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd-~~~~ 146 (304)
.+.+.++++|++.++... .++. .+|-...+.......... ....-.|++++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~---~L~~~~~~~~~~~~~~g~---~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGR---SLYVGPAGGPVRPVLTGG---SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCC---EEEEEcCCCcceeeccCC---ccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688899999999776655 4443 334433333332221111 234456888877666666666666663 2222
Q ss_pred ccc-eec--cCcccceeEEEEcCCCcEEEEeec---CCceEEEEeeecCCc---eEEE-ee-cCceeeeeeEEEEcCCCC
Q psy4754 147 CRV-NHL--MGHENRVSCLQVSPDGTAFSSGSW---DTTLRCRLFDLRADK---EVAC-YK-KDSILFGATSVDFSVSGR 215 (304)
Q Consensus 147 ~~~-~~~--~~h~~~v~~v~~sp~~~~las~s~---d~~i~i~~~d~~~~~---~~~~-~~-~~~~~~~~~~~~~s~~g~ 215 (304)
+.. ... ..-...|..+.+||||..+|.... ++.+.+-...-.... .+.. .. .......+..++|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 211 111 111128999999999998776652 344432222111111 1100 00 001123568999999999
Q ss_pred EEEEEeCCC
Q psy4754 216 LLFAGYNDY 224 (304)
Q Consensus 216 ~l~sg~~d~ 224 (304)
+++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 888765443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=93.46 E-value=10 Score=38.94 Aligned_cols=65 Identities=28% Similarity=0.358 Sum_probs=40.4
Q ss_pred eeEEEEcCCCCEEEEEe------------CCCcEEEEeCCC----------cee-----eEEeeccccceEEEEEccCCC
Q psy4754 205 ATSVDFSVSGRLLFAGY------------NDYTINVWDSLK----------CCR-----VNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~------------~d~~i~iwd~~~----------~~~-----~~~~~~h~~~i~~l~~sp~g~ 257 (304)
..+++++++|.++++=+ .||+|.+.-... +.+ ...-..|-..+.+|+.+|||.
T Consensus 595 ~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~ 674 (1899)
T KOG4659|consen 595 QRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD 674 (1899)
T ss_pred hhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence 36789999999887753 345555552110 000 111123556789999999999
Q ss_pred EEEEeecCCeee
Q psy4754 258 AFSSGSWDTTLR 269 (304)
Q Consensus 258 ~lasgs~D~~i~ 269 (304)
.++.-+-+-.||
T Consensus 675 v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 675 VIIADSGNSRIR 686 (1899)
T ss_pred EEEecCCchhhh
Confidence 888766555554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.07 E-value=6.1 Score=35.15 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=76.8
Q ss_pred ceeEEEEcCCCCEEEEee-----------CCC-cEEEEeCCC--ce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCc
Q psy4754 28 GATSVDFSVSGRLLFAGY-----------NDY-TINVWDSLK--CC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~ 91 (304)
...+++|.++|.++++-. ..+ .|.+++-.+ |. ....+...-.....+++.+++ .+++ +.+.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~- 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD- 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe-
Confidence 357899999999887642 223 777777543 22 223333333455789999888 5554 3332
Q ss_pred eEEEEeeeCCC-----eeEeE---Eeccc--eeeceeeeEEcCCCCEEEEEeCC-------------------CeEEEec
Q psy4754 92 LRCRLFDLRAD-----KEVAC---YKKDS--ILFGATSVDFSVSGRLLFAGYND-------------------YTINVWD 142 (304)
Q Consensus 92 i~~~~wd~~~~-----~~~~~---~~~~~--~~~~~~~~~~s~~~~~l~sg~~d-------------------g~i~iwd 142 (304)
| .++.|.... +.... +.... .......+.+.|||.+.++-+.. +.|..+|
T Consensus 92 i-~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 I-LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred E-EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 2 133344221 11111 11110 01124578899998765543311 3444555
Q ss_pred CCccccceec-cCcccceeEEEEcCCCcEEEEeecCC
Q psy4754 143 SLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDT 178 (304)
Q Consensus 143 ~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~d~ 178 (304)
..+.. +..+ .++ .....++|+|+|+++++-..+.
T Consensus 171 pdg~~-~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 171 PDGGK-LRVVAHGF-QNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred cCCCe-EEEEecCc-CCCccceECCCCCEEEEccCCC
Confidence 43322 2222 222 2356899999999888755443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.22 Score=48.10 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=70.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEE-----------ECCCCCeEEEEeCCCceEEEEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ-----------VSPDGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~-----------~s~d~~~l~sgs~D~~i~~~~w 97 (304)
|..+-|.++..++..+-.++++++....+... ..+++|..++..++ .+|||+.++.++.||.+ +.|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v--~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV--GFY 262 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc--cee
Confidence 55666667778888999999999988766543 44566876654433 67999999999999986 455
Q ss_pred eeC-----CCeeEeEEeccceeeceeeeEEcCC---------CCEEEEEe-CCCeEEEecCCccccc
Q psy4754 98 DLR-----ADKEVACYKKDSILFGATSVDFSVS---------GRLLFAGY-NDYTINVWDSLKCCRV 149 (304)
Q Consensus 98 d~~-----~~~~~~~~~~~~~~~~~~~~~~s~~---------~~~l~sg~-~dg~i~iwd~~~~~~~ 149 (304)
.+. ...+++.++.+.....++.+ ++.+ ..++++++ ....+++|.-...+++
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 542 22333444444321112222 2211 12344443 3567888876665555
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.95 E-value=5.5 Score=36.56 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=80.7
Q ss_pred EeCCCeEEEecCCccccceeccCcccceeEEEEcCCC--------cEEEEeecCCceEEEEeeecCCc-eEEEeecCc--
Q psy4754 132 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG--------TAFSSGSWDTTLRCRLFDLRADK-EVACYKKDS-- 200 (304)
Q Consensus 132 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~--------~~las~s~d~~i~i~~~d~~~~~-~~~~~~~~~-- 200 (304)
|.....++--|+..++.+.+..-|..- -|.|.|+. +.++ |-.+..| .-.|.|-.. .+..-...+
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~sv--FrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSV--FRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccce--EEecccccCCceeeeeehhcc
Confidence 555566666677777666666555433 56777743 2343 3334443 234443211 111111110
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhh
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~ 280 (304)
......+ ...-..-|+|+|+..|.|++||-....-...+.+-...|..+..+.+|.++++-. -.++-+-|.+-.|-++
T Consensus 561 tKn~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ik~g~~ 638 (776)
T COG5167 561 TKNKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVPIKYGQP 638 (776)
T ss_pred ccccccc-cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecccccCCc
Confidence 0011112 2233456899999999999998432222223556667899999999998765432 2456666666666556
Q ss_pred eeec
Q psy4754 281 LLRS 284 (304)
Q Consensus 281 ~~~~ 284 (304)
-++-
T Consensus 639 aGr~ 642 (776)
T COG5167 639 AGRD 642 (776)
T ss_pred cccc
Confidence 5554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.91 E-value=8.1 Score=33.77 Aligned_cols=130 Identities=13% Similarity=0.148 Sum_probs=73.8
Q ss_pred EEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE----------eCCCeEEEecCCccccceec--c-Ccc----
Q psy4754 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG----------YNDYTINVWDSLKCCRVNHL--M-GHE---- 156 (304)
Q Consensus 94 ~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg----------~~dg~i~iwd~~~~~~~~~~--~-~h~---- 156 (304)
+.+.|..+++.+..+.... ...+.++|+++.++++ -..-.|.+||..+-.+..++ . +|.
T Consensus 19 v~viD~d~~k~lGmi~~g~----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 19 VYVIDADSGKLLGMIDTGF----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEETTTTEEEEEEEEES----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred EEEEECCCCcEEEEeeccc----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5677877766655443311 1236679999988874 35568999998876544322 1 111
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
......++++|++++......-.-.|.+.|+...+.+..+....+ ...+-....-+.+-+.||++.-..+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-----~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-----WLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-----EEEEEEETTEEEEEETTSCEEEEEET
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-----EEEEecCCCceEEEecCCceEEEEEC
Confidence 223446789999987776654444456889888777666554332 22221112334455567766665544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=13 Score=36.16 Aligned_cols=113 Identities=10% Similarity=0.082 Sum_probs=66.2
Q ss_pred ceeeeEEcCCCCEEEEE-----eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCC-c---eEEEEee
Q psy4754 116 GATSVDFSVSGRLLFAG-----YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-T---LRCRLFD 186 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~-~---i~i~~~d 186 (304)
.+..+.++|++++++.+ +....+++.|+.++..+........ ..++|++|++.|+-...+. + -+++.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 34567789999988775 3345677788876653333222211 4589999998766554432 1 3567788
Q ss_pred ecCC--ceEEEeecCceeeeeeEEEEcCCCCEEEEEeC---CCcEEEEeC
Q psy4754 187 LRAD--KEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDS 231 (304)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~---d~~i~iwd~ 231 (304)
+.++ +....+........ .....+.++++++..+. ++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8877 44444543222121 23344558887666433 346888873
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=12 Score=35.23 Aligned_cols=179 Identities=10% Similarity=0.080 Sum_probs=78.5
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCce--eeeeecCCcCcEEEEEEC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d-----g~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s 77 (304)
.+..||+.+++-..............++. .++.+++.||.+ ..+..||+.+++ ....+....... +.+ .
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~ 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-N 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-E
Confidence 46778888875422211111111122222 367788888876 357778876543 111111111111 112 2
Q ss_pred CCCCeEEEEeCCCc----eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC--------CeEEEecCCc
Q psy4754 78 PDGTAFSSGSWDTT----LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--------YTINVWDSLK 145 (304)
Q Consensus 78 ~d~~~l~sgs~D~~----i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d--------g~i~iwd~~~ 145 (304)
-+++.++.||.+.. -.+..||..+.+-............ .++ ...++...+.|+.+ ..+.+||..+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 35677777774211 1235677654322111111001111 122 22345555555432 2388888765
Q ss_pred cc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCc
Q psy4754 146 CC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADK 191 (304)
Q Consensus 146 ~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~ 191 (304)
.+ .+..+.........+.+ +++.++.|+.+.. -.+..||..+.+
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 32 22222111111122223 6777777775521 113566666544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.58 E-value=10 Score=36.18 Aligned_cols=109 Identities=12% Similarity=0.185 Sum_probs=65.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee--eeecCCcCcEEEEEEC--CCCCeEEEEeCCCceEEEEeee-----
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVS--PDGTAFSSGSWDTTLRCRLFDL----- 99 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s--~d~~~l~sgs~D~~i~~~~wd~----- 99 (304)
.+-+.-+.-++..+.-+...++.|||...+..- ..+ ...+.|..+.|. ||++.+++-|-...|. ++--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~--l~~Q~R~dy 108 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVL--LYTQLRYDY 108 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEE--EEEccchhh
Confidence 344555555666656666778999999877532 222 457889999996 5888888888887753 3322
Q ss_pred C----CCeeEeEEeccce-eeceeeeEEcCCCCEEEEEeCCCeEEEec
Q psy4754 100 R----ADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYNDYTINVWD 142 (304)
Q Consensus 100 ~----~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~sg~~dg~i~iwd 142 (304)
. ....++.+.-... ...+....|.++|..++.. ++.+.++|
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 1 1122222211111 1234566788888655543 46788877
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=12 Score=34.73 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=74.9
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC--CcEEEEeCCCce--eeeeecCCcCcEEEEEECCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d--g~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d 79 (304)
.++..||+.+++-....+..........+ ..+|.+.+.||.+ ..+..||+.+++ .+..+......... ..-+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~--~~~~ 362 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAV--ASIN 362 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEE--EEEC
Confidence 35777898887543222211111112222 2467888888864 358888876542 22222211111112 2235
Q ss_pred CCeEEEEeCCCc-eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc--ccceeccCcc
Q psy4754 80 GTAFSSGSWDTT-LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHE 156 (304)
Q Consensus 80 ~~~l~sgs~D~~-i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~h~ 156 (304)
|+..+.||.++. -.+..||..+.+-............. ++ ...++...+.| |.+.+||..+. +.+..+....
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r 437 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR 437 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc
Confidence 777788776543 11345666543221111111011111 11 23345555555 45778886543 2232222112
Q ss_pred cceeEEEEcCCCcEEEEeecC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d 177 (304)
.....+.+ ++++++.||.+
T Consensus 438 ~~~~~~v~--~~~IYviGG~~ 456 (480)
T PHA02790 438 DNPELIIV--DNKLLLIGGFY 456 (480)
T ss_pred cccEEEEE--CCEEEEECCcC
Confidence 22222222 67788888755
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.77 E-value=7.3 Score=37.15 Aligned_cols=105 Identities=13% Similarity=0.219 Sum_probs=64.2
Q ss_pred cCCCCEEEEEeCCCeEEEecCCccccce-eccCcccceeEEEE--cCCCcEEEEeecCCceEEEEeee-c----CC----
Q psy4754 123 SVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQV--SPDGTAFSSGSWDTTLRCRLFDL-R----AD---- 190 (304)
Q Consensus 123 s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~--sp~~~~las~s~d~~i~i~~~d~-~----~~---- 190 (304)
+.-++..+.-.....+.|||.+....-. +.....+.|..+.| .|+++.+.+.+-.+.|. ++.. + ..
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~--l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVL--LYTQLRYDYTNKGPSW 115 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEE--EEEccchhhhcCCccc
Confidence 3334444444556789999987655322 12244678999987 57899888888888863 5532 1 11
Q ss_pred ceEEEeecCc-eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 191 KEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
..+..+.-.+ ...++....|.++|.+++.. ++.+.|+|-
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1122221111 11346678899999887765 467998874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=90.42 E-value=13 Score=33.59 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=48.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCC--CCE-EEEeeCCCcEEEE-eCCCce----eeeeec--------
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRL-LFAGYNDYTINVW-DSLKCC----RVNHLM-------- 65 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~--g~~-l~tg~~dg~v~iw-d~~~~~----~~~~~~-------- 65 (304)
+..++.+||+.+.+.+-.+..-....-..-+.|..+ ..+ ++.+....+|-.| ....++ .+-.+.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 467899999999988766665432222566788654 332 3333333344443 323321 111111
Q ss_pred ---------CCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCC
Q psy4754 66 ---------GHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRAD 102 (304)
Q Consensus 66 ---------~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~ 102 (304)
.-..-|+.|.+|.|.++|..+.| +|. +|.||+...
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd--vrqYDISDP 344 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD--VRQYDISDP 344 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTE--EEEEE-SST
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCc--EEEEecCCC
Confidence 11244789999999998876665 776 489999753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.36 E-value=12 Score=32.85 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=54.0
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceec----cCcccceeEEEEcCC----CcEEEEeecC------CceE
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHL----MGHENRVSCLQVSPD----GTAFSSGSWD------TTLR 181 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~----~~h~~~v~~v~~sp~----~~~las~s~d------~~i~ 181 (304)
..++|.|+++.++ +...|.|++++..... .+... .........++++|+ +..++..+.. ....
T Consensus 5 ~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 5 RSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred eEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 5789999987665 4669999999832221 12221 234456789999995 4444444422 1111
Q ss_pred EEEeeecCC-------ceEE-Eeec-CceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 182 CRLFDLRAD-------KEVA-CYKK-DSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 182 i~~~d~~~~-------~~~~-~~~~-~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
+.-|..... +.+. .... .........++|.|||.++++.++.
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 223333322 1111 1121 0111234679999999888775543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.48 Score=45.91 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=31.0
Q ss_pred CCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEE-----------EcCCCcEEEEeecCCce
Q psy4754 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ-----------VSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 124 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~-----------~sp~~~~las~s~d~~i 180 (304)
++.-++..+..++.+++-.+.+... .-+.+|...+..++ +||||+.||....||.+
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 4456677777788888766543221 23445766665543 34555555555555543
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.5 Score=42.33 Aligned_cols=137 Identities=13% Similarity=0.001 Sum_probs=78.9
Q ss_pred eeEEcCCCCEEEEE--eCCCeEEEecCCccccce-----------eccCcccceeEEEEcCCCc-EEEEeecCCceEEEE
Q psy4754 119 SVDFSVSGRLLFAG--YNDYTINVWDSLKCCRVN-----------HLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRL 184 (304)
Q Consensus 119 ~~~~s~~~~~l~sg--~~dg~i~iwd~~~~~~~~-----------~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~ 184 (304)
.....+|....+.. .++-.|..||+++.+.-. +......-..++.|.|.-. .++.+..|..+.+
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V-- 182 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV-- 182 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh--
Confidence 34445665544433 334578889987533211 1111122346777888543 3666777877643
Q ss_pred eeecCCc-eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec----cccceEEEEEccCCCEE
Q psy4754 185 FDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----HENRVSCLQVSPDGTAF 259 (304)
Q Consensus 185 ~d~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~----h~~~i~~l~~sp~g~~l 259 (304)
.-+.... ....+. .....++++|+|.|+.++.|-..|++.-|... .+....+.+ ...+|.||.|-..-..+
T Consensus 183 ~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 3222111 111111 12346899999999999999999999888643 232333332 14689999997765555
Q ss_pred EE
Q psy4754 260 SS 261 (304)
Q Consensus 260 as 261 (304)
+.
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 54
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=89.82 E-value=11 Score=31.72 Aligned_cols=197 Identities=14% Similarity=0.053 Sum_probs=101.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee--------------ecCCcCcEEEEE--ECCCCCeEEEEeCCCce
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH--------------LMGHENRVSCLQ--VSPDGTAFSSGSWDTTL 92 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~--------------~~~h~~~V~~l~--~s~d~~~l~sgs~D~~i 92 (304)
|..+...++-+.++.= .|+.+.++++..-..... .......+...+ -...+...+.....+.+
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 8889888876655444 359999999764332220 111223444444 11233334444445576
Q ss_pred EEEEeeeCC--C-eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec--cC----------ccc
Q psy4754 93 RCRLFDLRA--D-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MG----------HEN 157 (304)
Q Consensus 93 ~~~~wd~~~--~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~----------h~~ 157 (304)
.+.-|+... . .....+.... .+..+.|. ++.++.|..++ ..+.|+.+.....-+ .. ...
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~---~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPD---PPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSK 190 (275)
T ss_pred EEEEEECCcccccceeEEEEcCC---CcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCC
Confidence 555565531 2 3334333322 34566676 56677776444 667787754332111 11 112
Q ss_pred ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE--EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 158 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
++..+.. ++++++++- .+-.+ ..|... +... .+.... .+.++++ ..+||++-.. +.|.||++.+++
T Consensus 191 ~~~~~~~-~~~e~Ll~~-~~~g~---fv~~~G-~~~r~~~i~W~~---~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 191 PLGIFQL-SDNEFLLCY-DNIGV---FVNKNG-EPSRKSTIQWSS---APQSVAY--SSPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ceEEEEe-CCceEEEEe-cceEE---EEcCCC-CcCcccEEEcCC---chhEEEE--ECCEEEEECC-CEEEEEECcCCc
Confidence 3333333 345555543 22221 344432 2221 222221 2344555 4568777665 569999999998
Q ss_pred eeEEeeccc
Q psy4754 236 RVNHLMGHE 244 (304)
Q Consensus 236 ~~~~~~~h~ 244 (304)
.+..+..+.
T Consensus 259 lvQ~i~~~~ 267 (275)
T PF00780_consen 259 LVQTIPLPN 267 (275)
T ss_pred EEEEEECCC
Confidence 888776543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=89.67 E-value=12 Score=32.03 Aligned_cols=165 Identities=16% Similarity=0.229 Sum_probs=86.4
Q ss_pred ceeEEeeccccceEeeeecccccc---c-eeEEEEcCC-C----CEE-EEeeCCCcEEEEeCCCceeeeeecC-------
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILF---G-ATSVDFSVS-G----RLL-FAGYNDYTINVWDSLKCCRVNHLMG------- 66 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~---~-i~~~~~~~~-g----~~l-~tg~~dg~v~iwd~~~~~~~~~~~~------- 66 (304)
-++=+||+.+++++..+..+.... + ...+.+... + .++ +|=+..+.+.++|+.+++.-+.+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 367789999999877766642221 2 667777552 1 233 3545567899999988754332221
Q ss_pred ------------CcCcEEEEEECC---CCCeEEEEeCCCceEEEEeeeCCC-----e---------eEeEE-eccceeec
Q psy4754 67 ------------HENRVSCLQVSP---DGTAFSSGSWDTTLRCRLFDLRAD-----K---------EVACY-KKDSILFG 116 (304)
Q Consensus 67 ------------h~~~V~~l~~s~---d~~~l~sgs~D~~i~~~~wd~~~~-----~---------~~~~~-~~~~~~~~ 116 (304)
..+.+..++.+| +++.|.=+..-+. +++.+.+. . ....+ ++. -.
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~---~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~---~~ 187 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR---KLYRVPTSVLRDPSLSDAQALASQVQDLGDKG---SQ 187 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S---EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------S
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC---cEEEEEHHHhhCccccccccccccceeccccC---CC
Confidence 113366666655 5556654443332 23433210 0 00000 100 01
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCcccc---ceecc---CcccceeEEEEcC--CCcEEEEe
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---VNHLM---GHENRVSCLQVSP--DGTAFSSG 174 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~---~h~~~v~~v~~sp--~~~~las~ 174 (304)
....+++++|..+++--..+.|..|+..+.-. ...+. ..--.+..+++.+ +|.+.+.+
T Consensus 188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 24577888898888888899999999765211 11111 1123567777777 66554443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=14 Score=32.48 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=74.4
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEE-ecCC--ccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINV-WDSL--KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 193 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~i-wd~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~ 193 (304)
+..+.+.+++.+++.+. .|.+.. +|.. +.+.+. ..-...+.++.+.|+++.++.+ ..+.+. +-....+..-
T Consensus 175 ~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~--~~s~d~G~sW 248 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIR--FNDPDDLESW 248 (334)
T ss_pred EEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEE--EccCCCCCcc
Confidence 45677888876665554 454433 3321 122221 2233568889999999877665 355531 1112222211
Q ss_pred EEeecC--ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe---eccccceEEEEEccCCCEEEEeecCCee
Q psy4754 194 ACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 194 ~~~~~~--~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~---~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
...... .....+.++.+.|++..+++|. +|.+.. ....++.-... .+-....+.+.|..+++.++.|.. +.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR-GVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC-ceE
Confidence 111110 0112356788999888777664 555543 22222221111 122246788888888888888764 444
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=89.18 E-value=13 Score=34.36 Aligned_cols=29 Identities=17% Similarity=-0.087 Sum_probs=21.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWD 54 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd 54 (304)
.+.|..+..++.|..++-.|.+|.+.++=
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 34466788889999998888898776544
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.93 E-value=13 Score=36.32 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=20.3
Q ss_pred eeceeeeEEcCCCCEEEEEeCCCeEEE
Q psy4754 114 LFGATSVDFSVSGRLLFAGYNDYTINV 140 (304)
Q Consensus 114 ~~~~~~~~~s~~~~~l~sg~~dg~i~i 140 (304)
.+.+..+.++++|.+++..+..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 355678899999999988877654444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=88.77 E-value=6 Score=32.94 Aligned_cols=112 Identities=19% Similarity=0.293 Sum_probs=60.0
Q ss_pred EEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecC--ceeee--eeEEEEcCCCCEEEEEeCCC-cEEEEeCCC-ce
Q psy4754 163 QVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKD--SILFG--ATSVDFSVSGRLLFAGYNDY-TINVWDSLK-CC 235 (304)
Q Consensus 163 ~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~--~~~~~--~~~~~~s~~g~~l~sg~~d~-~i~iwd~~~-~~ 235 (304)
.+-|||+++.+|+. |+.-.+++++.-.......+... ....+ --+...-|||+.|+.|+.+. +..+|.... ..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 57789999999886 44434567765331111111110 00000 12344578999999987664 455665421 11
Q ss_pred ---eeEEeec-----cccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 236 ---RVNHLMG-----HENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 236 ---~~~~~~~-----h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.+.-+.. ....=.-+-+.|+|+.|+.+..+..|..+...
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n 199 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN 199 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence 1111110 01111245668999999999888777766443
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.50 E-value=15 Score=31.50 Aligned_cols=167 Identities=14% Similarity=0.182 Sum_probs=89.2
Q ss_pred eEEEEeeeCCCeeEeEEeccceeec----eeeeEEcCCC-----CEEEEEeC-CCeEEEecCCccccceecc--------
Q psy4754 92 LRCRLFDLRADKEVACYKKDSILFG----ATSVDFSVSG-----RLLFAGYN-DYTINVWDSLKCCRVNHLM-------- 153 (304)
Q Consensus 92 i~~~~wd~~~~~~~~~~~~~~~~~~----~~~~~~s~~~-----~~l~sg~~-dg~i~iwd~~~~~~~~~~~-------- 153 (304)
-|+..||+.+.+.++.+........ ...+.+.... .+++.... .+.+.++|+.+++..+.+.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3567889888888777754322211 2344444321 35555544 4789999988754322111
Q ss_pred -----------CcccceeEEEEcC---CCcEEEEeecCCceEEEEeeecC-----Cc---------eEEEeecCceeeee
Q psy4754 154 -----------GHENRVSCLQVSP---DGTAFSSGSWDTTLRCRLFDLRA-----DK---------EVACYKKDSILFGA 205 (304)
Q Consensus 154 -----------~h~~~v~~v~~sp---~~~~las~s~d~~i~i~~~d~~~-----~~---------~~~~~~~~~~~~~~ 205 (304)
...+.+..++.+| +++++.-+.-.+. ++|.+.+ .. .+..+-... ...
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~---~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~--~~s 188 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR---KLYRVPTSVLRDPSLSDAQALASQVQDLGDKG--SQS 188 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S---EEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC---cEEEEEHHHhhCccccccccccccceeccccC--CCC
Confidence 1122356667655 6666665554443 2343321 10 111111100 134
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCc------eeeEEeeccccceEEEEEcc--CCCEEEEee
Q psy4754 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKC------CRVNHLMGHENRVSCLQVSP--DGTAFSSGS 263 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d~~i~iwd~~~~------~~~~~~~~h~~~i~~l~~sp--~g~~lasgs 263 (304)
..++++++|.++++--..+.|..|+..+. ..+.+-...-.++..+++.+ +|...+..+
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 57788999999999999999999997751 22222222246889999999 777776653
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=19 Score=32.51 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=73.3
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCc-eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-----e
Q psy4754 31 SVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-----E 104 (304)
Q Consensus 31 ~~~~~~~g~~l~tg~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~-----~ 104 (304)
.+..+++|.+++.|..-...+-||...- .... -..-...++.+.+.+++..++.+ .++.+ ++....+. .
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~-~~~~~~~l~~v~~~~dg~l~l~g-~~G~l---~~S~d~G~~~~~~~ 317 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH-NRASARRIQNMGWRADGGLWLLT-RGGGL---YVSKGTGLTEEDFD 317 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEe-cCCCccceeeeeEcCCCCEEEEe-CCceE---EEecCCCCcccccc
Confidence 3455677776665533322333443221 0111 12234568899999998887766 45553 33333322 1
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC--ccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
............+..+.|.+++..+++ +..|.+...... +.+....-..-......+.|.++++.+++| .++.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 111111111123567788877765554 556776665421 222222112223456788888877777775 45543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.34 E-value=6.4 Score=37.95 Aligned_cols=106 Identities=9% Similarity=0.005 Sum_probs=65.6
Q ss_pred CCCCEEEEEeCCCeEEEecCCc-------c----c---------cceeccCcccceeEEEEc--CCCcEEEEeecCCceE
Q psy4754 124 VSGRLLFAGYNDYTINVWDSLK-------C----C---------RVNHLMGHENRVSCLQVS--PDGTAFSSGSWDTTLR 181 (304)
Q Consensus 124 ~~~~~l~sg~~dg~i~iwd~~~-------~----~---------~~~~~~~h~~~v~~v~~s--p~~~~las~s~d~~i~ 181 (304)
-+.+.|+.+.+||.|.+|.+.+ . . +... ..-..++++++++ ...+++|.++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEE
Confidence 3456788899999999995421 0 0 1111 1233578999998 7778888888777776
Q ss_pred EEEeeecCCceEEEeecCceeeeeeEEEEcCCC-----C-EEEEEeCCCcEEEEeC
Q psy4754 182 CRLFDLRADKEVACYKKDSILFGATSVDFSVSG-----R-LLFAGYNDYTINVWDS 231 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g-----~-~l~sg~~d~~i~iwd~ 231 (304)
+..+.+...+. ...+......++.+++|-++. . .+++++=.|.+-+|++
T Consensus 191 VFaf~l~~~r~-~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERF-YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecccccc-ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 55555532221 111122233456777776553 2 7777888898888776
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.33 E-value=2.1 Score=23.94 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=15.9
Q ss_pred ccccceEEEEEccCCCEEEEeec
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSW 264 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~ 264 (304)
...+.-...+|||||+.|+=.+.
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEE
T ss_pred cCCccccCEEEecCCCEEEEEec
Confidence 34556778899999998885553
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=88.12 E-value=7.1 Score=35.31 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=49.1
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEE-EEcC----------------CCCEEEE
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSV-DFSV----------------SGRLLFA 219 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~s~----------------~g~~l~s 219 (304)
-.+.+++.+|++++.|+. |+--+|.++|+..+..+..+++-.-- .+--+ ...+ ...+|+.
T Consensus 308 R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 447789999998877764 55556789999887766666543210 00000 0001 1123444
Q ss_pred -EeCCCcEEEEeCCCceeeEEe
Q psy4754 220 -GYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 220 -g~~d~~i~iwd~~~~~~~~~~ 240 (304)
+-..|.|.||.+..+.++..+
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEE
Confidence 667788999998777666544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=88.05 E-value=24 Score=33.24 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=63.6
Q ss_pred CcccceeEEEEcCCC----cEEEEeecCCceEEEEeeecC-----CceEEEe-ecC--ceeeeeeEEEEcCCCCEEEEEe
Q psy4754 154 GHENRVSCLQVSPDG----TAFSSGSWDTTLRCRLFDLRA-----DKEVACY-KKD--SILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~----~~las~s~d~~i~i~~~d~~~-----~~~~~~~-~~~--~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
|.-..|.++.|.|-+ -.+......+.| .+|.+.. .+.+... ... ....-...+.|+|....|+.=.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhV--tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHV--TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceE--EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 344568999999842 234444555664 5787541 1211110 011 1111234678999999887743
Q ss_pred CCCcEEEE-eCC-CceeeEEeeccccceEEEEEccCCCEEEEee-cCCeeeeccc
Q psy4754 222 NDYTINVW-DSL-KCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRDEES 273 (304)
Q Consensus 222 ~d~~i~iw-d~~-~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs-~D~~i~~~~~ 273 (304)
. ..+.|+ ++. ...+++.-..-.+.|.|.+|.+||++|+.+- .--.-.+||.
T Consensus 132 ~-~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 132 A-RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred c-CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 2 234443 332 1223333224568999999999999877552 2233457754
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=87.93 E-value=7.7 Score=39.09 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=93.5
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCC-------ce---------eeeeecCCc-CcEEEEEECCCCCeEEEE-eCCCce
Q psy4754 31 SVDFSVSGRLLFAGYNDYTINVWDSLK-------CC---------RVNHLMGHE-NRVSCLQVSPDGTAFSSG-SWDTTL 92 (304)
Q Consensus 31 ~~~~~~~g~~l~tg~~dg~v~iwd~~~-------~~---------~~~~~~~h~-~~V~~l~~s~d~~~l~sg-s~D~~i 92 (304)
.++.++.-.++++++..+.+.++-... +. ...+++-|. -++..+...+|++..+.- +..+..
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 355555545555666666666655321 11 112233332 245556666776643322 222443
Q ss_pred EEEEeeeCCCeeEe-------EEe---ccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 93 RCRLFDLRADKEVA-------CYK---KDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 93 ~~~~wd~~~~~~~~-------~~~---~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
|..+|+..-..-. +.. .+...+ ..++.|.|.- ...+....|+.|++.-+.......+-.--....++
T Consensus 126 -v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf-~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Ta 203 (1405)
T KOG3630|consen 126 -VYSFDLEEFSESRYETTVPLKNSATSFEKPVF-QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTA 203 (1405)
T ss_pred -EEEEehHhhhhhhhhhccccccccchhccccc-cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceee
Confidence 5678886321111 000 001111 2345555542 23455677888888765432222222233456899
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcCCCCEEEE
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
++|+|.|+.++.|-..+++. -|..... +.+....... ...|.++.|-....++++
T Consensus 204 v~WSprGKQl~iG~nnGt~v--Qy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEV--QYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred EEeccccceeeEecCCCeEE--EeecccceeecccCCCcCC-CcceeEEEEecceeEEEE
Confidence 99999999999999888863 3432221 1222111111 234677888777777665
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.86 E-value=5.1 Score=32.84 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=39.6
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCceeeee-------ec-------CCcCcEEEEEECCCCCeEEEEeC
Q psy4754 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-------LM-------GHENRVSCLQVSPDGTAFSSGSW 88 (304)
Q Consensus 32 ~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~-------~~-------~h~~~V~~l~~s~d~~~l~sgs~ 88 (304)
+.+..++.+|++-..+|.+++||+.+++.+.. +. .....|..+.+..+|.-+++-+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 44556788999999999999999987754321 11 24456777777777776666553
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.51 E-value=7.4 Score=31.87 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred eeEEcCCCCEEEEEeCCCeEEEecCCccccceec------c--------CcccceeEEEEcCCCcEEEEee
Q psy4754 119 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL------M--------GHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 119 ~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~------~--------~h~~~v~~v~~sp~~~~las~s 175 (304)
.+.+...++++++.+.+|.+++||+.+.+.+..- . .....|..+.++.+|.-+++-+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 3446677889999999999999999876543221 1 2334566666666666555544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=87.21 E-value=34 Score=34.19 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=64.5
Q ss_pred ccceeEEEEcCCC------CEEEEeeCCCcEEEEeC-CCceeeee--ecCC--cCcEEEEEECCCCCeEEEEeCCCceEE
Q psy4754 26 LFGATSVDFSVSG------RLLFAGYNDYTINVWDS-LKCCRVNH--LMGH--ENRVSCLQVSPDGTAFSSGSWDTTLRC 94 (304)
Q Consensus 26 ~~~i~~~~~~~~g------~~l~tg~~dg~v~iwd~-~~~~~~~~--~~~h--~~~V~~l~~s~d~~~l~sgs~D~~i~~ 94 (304)
...|.|++++|-| ++++.|.++..+.+--. .+...+.+ +.+- ...|.-..+-.|..+|..+..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3458999999742 27888877766665442 23322221 1111 123444456556789999999999876
Q ss_pred EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEec
Q psy4754 95 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd 142 (304)
.+.|..++......+..-...++.--.|+..++.-+.+..|.-..+|-
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~ 657 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS 657 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe
Confidence 777776654432211111111223334555555444455566666654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=86.88 E-value=2.3 Score=24.74 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=25.1
Q ss_pred ceeEEEEcCC-C--CEEEEeeCCCcEEEEeCCC
Q psy4754 28 GATSVDFSVS-G--RLLFAGYNDYTINVWDSLK 57 (304)
Q Consensus 28 ~i~~~~~~~~-g--~~l~tg~~dg~v~iwd~~~ 57 (304)
++.++.|+|+ + .+|+-+-.-|.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999985 4 5898888899999999874
|
It contains a characteristic DLL sequence motif. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=86.64 E-value=32 Score=33.30 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=45.6
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee----ecCCcCcEEEEEECCCCC
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH----LMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~----~~~h~~~V~~l~~s~d~~ 81 (304)
|+||+..+... .. .......+-.+.|+.+..+| .-..||++++|+.. |+.+.. +......|..+.+..+|-
T Consensus 66 I~If~~sG~lL-~~--~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 66 IRIFNISGQLL-GR--ILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred EEEEeccccch-HH--HHhcCCCeeeecccCCceEE-EEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 77777766421 11 11111146778898776554 66799999999985 233322 123334566666666776
Q ss_pred eEEEEe
Q psy4754 82 AFSSGS 87 (304)
Q Consensus 82 ~l~sgs 87 (304)
.+++.+
T Consensus 141 avlt~~ 146 (829)
T KOG2280|consen 141 AVLTVS 146 (829)
T ss_pred EEEecC
Confidence 666664
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.36 E-value=4.2 Score=22.90 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=22.3
Q ss_pred CCCCEEEE-EeCCCcEEEEeCCCceeeEEeec
Q psy4754 212 VSGRLLFA-GYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 212 ~~g~~l~s-g~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
|++++|.+ ...+++|.++|..++..+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56665555 44578899999988877776654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=86.18 E-value=3.5 Score=33.39 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=36.4
Q ss_pred CEEEEEeCCCcEEEEeCC--CceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 215 RLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 215 ~~l~sg~~d~~i~iwd~~--~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
..|+.+.....|.+|++. ..+.+.++..- +.|..++++..|.+|+|==
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 455554667889999977 44556666544 7999999999999999854
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=85.76 E-value=32 Score=32.41 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEEEEccCCCEEEE
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSS 261 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~las 261 (304)
.+.+++.+..+|.++.+|..+++++-++.-... .-.-+.|.-+|+.++.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~ 520 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA 520 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence 455777788899999999999999877654321 1122344456765543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.33 Score=43.78 Aligned_cols=216 Identities=10% Similarity=0.086 Sum_probs=118.6
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEe
Q psy4754 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYK 109 (304)
Q Consensus 31 ~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~ 109 (304)
...|.|.+.-++.+.-+-.+..||-........ ...+....++|-.++..+ +.+-.-+. +.+||+.+..... ++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~--n~tg~aldm~wDkegdvlavlAek~~p--iylwd~n~eytqq-LE 113 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILEL--NPTGKALDMAWDKEGDVLAVLAEKTGP--IYLWDVNSEYTQQ-LE 113 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceeccc--CCchhHhhhhhccccchhhhhhhcCCC--eeechhhhhhHHH-Hh
Confidence 456677776677888888999999654322211 122334456666666533 33333444 3689987543211 11
Q ss_pred ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecC
Q psy4754 110 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 189 (304)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~ 189 (304)
... ...-.-..|++....++.+...+.+.+++..+...+.....|..++.++++.+.+ ..+.++.|..+. +-...+
T Consensus 114 ~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~--v~~qeg 189 (615)
T KOG2247|consen 114 SGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS--VTTQEG 189 (615)
T ss_pred ccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHH--Hhhhcc
Confidence 100 0000125678888888999899999999987766665555599999999999876 566677777642 111111
Q ss_pred CceEEEeecCceee-----eeeEEEEcCCCCEEEEEeCCCcEEEE----eCCCceeeEEeeccccceEEEEEccCCC
Q psy4754 190 DKEVACYKKDSILF-----GATSVDFSVSGRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 190 ~~~~~~~~~~~~~~-----~~~~~~~s~~g~~l~sg~~d~~i~iw----d~~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+....+....-.. -...-.|..-|+.+.+.-..+....| ..+...-+ .+..-.+.+.|+.|-.||.
T Consensus 190 -eta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~~~gni~cyrwylDg~ 264 (615)
T KOG2247|consen 190 -ETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQEKYGNIHCYRWYLDGY 264 (615)
T ss_pred -ceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-EeeecCCceeEEEEecccc
Confidence 1111111111000 00111234445555554332222222 12222223 5666678899999988865
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=85.41 E-value=4.6 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=23.5
Q ss_pred eeEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q psy4754 205 ATSVDFSVSG---RLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 205 ~~~~~~s~~g---~~l~sg~~d~~i~iwd~~~ 233 (304)
+.++.|+|+. .+|+....-+.|.|+|+.+
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4678899754 5888888889999999874
|
It contains a characteristic DLL sequence motif. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.39 E-value=22 Score=30.34 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=97.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
++++.|+|+.+.|.+-.....-.+|=..+|+.++++. +-.+ -.+|.+..++++.++--.++++. ++-+...+..-
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~--~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALY--LFTVDADTTVI 164 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEE--EEEEcCCccEE
Confidence 8999999999888877777777788777888887754 3222 23567777777777777777753 34443322111
Q ss_pred EE-----ecc---ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc---ceeccCcc-------cceeEEEEcCCC
Q psy4754 107 CY-----KKD---SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---VNHLMGHE-------NRVSCLQVSPDG 168 (304)
Q Consensus 107 ~~-----~~~---~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~h~-------~~v~~v~~sp~~ 168 (304)
.. +.. ....+.-.+++.|..+.|+.+-...-+.+|....... +.....++ ..|+++.|.+..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 11 100 0012345788999999999888888888886542210 11111121 346788898877
Q ss_pred cEEEEeecCCceEEEEeeecC
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRA 189 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~ 189 (304)
..+..=|++... +...|...
T Consensus 245 ~~LLVLS~ESr~-l~Evd~~G 264 (316)
T COG3204 245 NSLLVLSDESRR-LLEVDLSG 264 (316)
T ss_pred CcEEEEecCCce-EEEEecCC
Confidence 777777776664 23444443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.11 E-value=23 Score=30.26 Aligned_cols=163 Identities=9% Similarity=0.084 Sum_probs=92.6
Q ss_pred CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 66 ~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
+-...|++|.|+|+.+.|++......- .++=-..++.++.+...... ..-.+.+..+++++++--.++.+.++.+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~--iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAA--IVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCce--EEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 334459999999999887776654442 23444556677666543311 123566777777777766788888775433
Q ss_pred cccce-------ec--cCc-ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe----ecCc---eeeeeeEE
Q psy4754 146 CCRVN-------HL--MGH-ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY----KKDS---ILFGATSV 208 (304)
Q Consensus 146 ~~~~~-------~~--~~h-~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~----~~~~---~~~~~~~~ 208 (304)
...+. .+ ..+ +..-..++++|..+.|..+-.-.-+.|..|+... ..+... .... ....+.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~-~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP-SSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC-cccccccccCcccccceEeeccccc
Confidence 21111 11 112 4456789999988877776665565444444211 111110 0000 12346677
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEeCC
Q psy4754 209 DFSVS-GRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 209 ~~s~~-g~~l~sg~~d~~i~iwd~~ 232 (304)
.|++. +.+|+-+.+++.+.-.|..
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecC
Confidence 88865 5556657677766666643
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.90 E-value=41 Score=32.97 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=49.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEE---eeeC----C-CeeEeEE--ecc------ceeeceeeeEEcCC---CCEEE
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRL---FDLR----A-DKEVACY--KKD------SILFGATSVDFSVS---GRLLF 130 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~---wd~~----~-~~~~~~~--~~~------~~~~~~~~~~~s~~---~~~l~ 130 (304)
.|..|.++|+|++|+-.|..+...+.+ |--. . ...+.|- .-+ .....+..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 588899999999998887766543333 2111 0 1122221 111 11123567899986 57899
Q ss_pred EEeCCCeEEEecCCcc
Q psy4754 131 AGYNDYTINVWDSLKC 146 (304)
Q Consensus 131 sg~~dg~i~iwd~~~~ 146 (304)
.-..|+++++||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 9999999999998653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=84.48 E-value=0.12 Score=46.38 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=90.4
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEE-eecCCceEEEEeeecCCceEE-E
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS-GSWDTTLRCRLFDLRADKEVA-C 195 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las-~s~d~~i~i~~~d~~~~~~~~-~ 195 (304)
....+.+.+.-++.+..+..+..||-.. +.... ...++....+++..++..++. +-..+. +.+||+.+..... .
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le-~n~tg~aldm~wDkegdvlavlAek~~p--iylwd~n~eytqqLE 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGP--IYLWDVNSEYTQQLE 113 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecc-cCCchhHhhhhhccccchhhhhhhcCCC--eeechhhhhhHHHHh
Confidence 3456677777788888888888898432 22211 223445566777776654443 333445 3689986532211 1
Q ss_pred eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 196 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
...... -.-..|++.++.++.|...+.+.|++..+.+.....-.|..+++++++.+.+. .+.++.|.++
T Consensus 114 ~gg~~s---~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 114 SGGTSS---KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred ccCcch---HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 111111 01256889999999999999999999877665544433999999999999864 4455555544
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=84.30 E-value=13 Score=35.13 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.1
Q ss_pred eeEEEEcC----CCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 205 ATSVDFSV----SGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 205 ~~~~~~s~----~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
+..+++++ +..++++-+.|+++|+||+.+++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 34555666 7889999999999999999999886654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=84.07 E-value=32 Score=31.03 Aligned_cols=201 Identities=12% Similarity=0.055 Sum_probs=99.4
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee-------Ee----------------EEec----c---c-------
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE-------VA----------------CYKK----D---S------- 112 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~-------~~----------------~~~~----~---~------- 112 (304)
.|+.++|+++...|+.|-..|.+.++-|..+.... .. -+.. . .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888888887788888888887666666542211 00 0000 0 0
Q ss_pred --eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee--ccC------cccceeEEEEcC-----CC---cEEEEe
Q psy4754 113 --ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH--LMG------HENRVSCLQVSP-----DG---TAFSSG 174 (304)
Q Consensus 113 --~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~------h~~~v~~v~~sp-----~~---~~las~ 174 (304)
....++.++.| |=.+++.|+.+|.+.|.|++....+.. +.. ....|+++.|+. |+ -.+..|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 00125566665 445999999999999999987655433 112 234577777752 33 246677
Q ss_pred ecCCceEEEEeeec--C-CceEEEeecC--ceeeeeeEEE-EcCC--------------------CCEEEEEeCCCcEEE
Q psy4754 175 SWDTTLRCRLFDLR--A-DKEVACYKKD--SILFGATSVD-FSVS--------------------GRLLFAGYNDYTINV 228 (304)
Q Consensus 175 s~d~~i~i~~~d~~--~-~~~~~~~~~~--~~~~~~~~~~-~s~~--------------------g~~l~sg~~d~~i~i 228 (304)
...|.+ ..|.+- . +.-...+... .....+..+. |+.+ -+-++....+..|++
T Consensus 162 Tn~G~v--~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 162 TNSGNV--LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp ETTSEE--EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred eCCCCE--EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 777765 345432 1 1111111000 0001111111 2111 122334444778999
Q ss_pred EeCCCceeeEEeeccccceEEEEEc-----cCCCEEEEeecCCeeeeccc
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVS-----PDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~s-----p~g~~lasgs~D~~i~~~~~ 273 (304)
+...+.+..+......-....+.+- ..+..|++-..|+.|+++-+
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 9988776655544332233344452 35778888899999997754
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=83.87 E-value=42 Score=32.29 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=76.8
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCcc--ccceec-cCcccceeEEEEcCC------CcEEEEeec--CCceEEEEe
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHL-MGHENRVSCLQVSPD------GTAFSSGSW--DTTLRCRLF 185 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~-~~h~~~v~~v~~sp~------~~~las~s~--d~~i~i~~~ 185 (304)
+-.+.|..+++.++.....|.|.+||.... +.+... ..+...+..=.|-++ ..++.+-+. ++.+..+++
T Consensus 132 vv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~ 211 (670)
T PF10395_consen 132 VVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLI 211 (670)
T ss_pred eEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEE
Confidence 456788889999999999999999997221 111111 122222211122221 223333333 444556788
Q ss_pred ee--cCCceEEEeec-Cceeeee--eEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-----c-cceEEE-EEc
Q psy4754 186 DL--RADKEVACYKK-DSILFGA--TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-----E-NRVSCL-QVS 253 (304)
Q Consensus 186 d~--~~~~~~~~~~~-~~~~~~~--~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-----~-~~i~~l-~~s 253 (304)
.+ ...+ +..... ....... ..+++. +|.++-- .+++|.+|++...+..+++.-. . ..+.++ +.+
T Consensus 212 ~l~~~~~~-~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 212 SLSNESSS-IFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EeccCCcc-eEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 87 2222 222210 0000111 122232 5665444 5779999998877666554432 1 123333 333
Q ss_pred cCCCEEEEeecCCeeeecccc
Q psy4754 254 PDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 254 p~g~~lasgs~D~~i~~~~~~ 274 (304)
| .+.|++. +.+|.+.|+.
T Consensus 288 ~-nRvLLs~--~nkIyLld~~ 305 (670)
T PF10395_consen 288 P-NRVLLSV--NNKIYLLDLK 305 (670)
T ss_pred C-CeEEEEc--CCEEEEEeeh
Confidence 3 3556554 5678777653
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.83 E-value=22 Score=34.45 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=70.2
Q ss_pred cceeEEEEcC--CCCEEEEeeCCCcEEEEeCCC-------c----e---------eeeeecCCcCcEEEEEEC--CCCCe
Q psy4754 27 FGATSVDFSV--SGRLLFAGYNDYTINVWDSLK-------C----C---------RVNHLMGHENRVSCLQVS--PDGTA 82 (304)
Q Consensus 27 ~~i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--~d~~~ 82 (304)
|.|+-+.... +...|+.+..||.|.+|.+++ . . +--.+ .-...+++|+++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceE
Confidence 4455554432 446899999999999998521 1 0 00111 123578999998 77778
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC------CEEEEEeCCCeEEEecC
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG------RLLFAGYNDYTINVWDS 143 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~l~sg~~dg~i~iwd~ 143 (304)
++.++.-..|.+..+.+...+.... +.......+.++.|-++. ..+++++=.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~-~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHV-PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccc-cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888777777666666542222111 111122235577776543 26777888999999886
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.82 E-value=16 Score=31.50 Aligned_cols=95 Identities=16% Similarity=0.012 Sum_probs=59.5
Q ss_pred eeeEEEEcCCCCEEEEEeCCCcEEEEeCC------Ccee-eEEeec-----cccceEEEEEccCCC------------EE
Q psy4754 204 GATSVDFSVSGRLLFAGYNDYTINVWDSL------KCCR-VNHLMG-----HENRVSCLQVSPDGT------------AF 259 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d~~i~iwd~~------~~~~-~~~~~~-----h~~~i~~l~~sp~g~------------~l 259 (304)
+.+.++++|.+.+-++....+...+||.. ..+. +-++.. -.+..+.+.|+.-.. .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45889999999998888778899999975 1222 233332 124567788874332 35
Q ss_pred EEeecCCeeeeccccccch---h---heeeccccCCceeEEEEEe
Q psy4754 260 SSGSWDTTLRDEESKNRYM---Q---YLLRSRITKPTQGLTVYFQ 298 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~ 298 (304)
+-+++|++|.-|...-.-- + -..++..-.-++|+.++--
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~ 148 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPT 148 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeec
Confidence 6778999999997533221 1 1122333444667776643
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=83.68 E-value=12 Score=33.88 Aligned_cols=41 Identities=22% Similarity=0.126 Sum_probs=36.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 69 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~ 69 (304)
+.++..+|++++.|+..+=|.|.++|+.++..++..+|-.+
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 67899999999999988889999999999988888887554
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.63 E-value=8.2 Score=30.24 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=25.1
Q ss_pred ceEEEEEccCC------CEEEEeecCCeeeeccccc
Q psy4754 246 RVSCLQVSPDG------TAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 246 ~i~~l~~sp~g------~~lasgs~D~~i~~~~~~~ 275 (304)
.|.+++|||-| ..||.-+.++.+.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999965 4788899999999997543
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=83.43 E-value=38 Score=31.47 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=50.4
Q ss_pred eceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE
Q psy4754 115 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194 (304)
Q Consensus 115 ~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~ 194 (304)
+.+..+..++.|..++..+.+|.+.++=.+...+-..+...+..|+|=.+.-+.++|.+ + ..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s--~~--------------- 165 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-S--TS--------------- 165 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-C--Cc---------------
Confidence 34556777888998888888887766532222221122222222333333222222111 1 11
Q ss_pred EeecCceeeeeeEEEEcCCC---CEEEEEeCCCcEEEEeCCCceee
Q psy4754 195 CYKKDSILFGATSVDFSVSG---RLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 195 ~~~~~~~~~~~~~~~~s~~g---~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
..+...+|+|+. ..|..-.+|..|++||....+.+
T Consensus 166 --------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 166 --------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred --------eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 122445567664 56666677888888887654443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.42 E-value=30 Score=32.05 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-------eEEEEeCCCceEEEEeeeC-CCeeEeE
Q psy4754 37 SGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-------AFSSGSWDTTLRCRLFDLR-ADKEVAC 107 (304)
Q Consensus 37 ~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-------~l~sgs~D~~i~~~~wd~~-~~~~~~~ 107 (304)
+.++| ..|+....+.--|++.|+.+.....|.+- -+.+.|+.+ .-+.|=.|..| .-.|.+ .++.+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~sv--FrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSV--FRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccce--EEecccccCCceee
Confidence 44444 46777777888888888888777777665 456777543 12334345553 223433 2233322
Q ss_pred EeccceeeceeeeEEc----CCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 108 YKKDSILFGATSVDFS----VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s----~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
.+... + .+.-.|+ ..+.++++|+..|.|++||...-..-.-+.+-...|..+..+.+|+++++.+ ..++ .
T Consensus 554 ~esKd--Y-~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yl--l 627 (776)
T COG5167 554 VESKD--Y-KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYL--L 627 (776)
T ss_pred eeehh--c-cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceE--E
Confidence 21111 0 1122222 3456999999999999999432222223456667899999999998765433 3343 3
Q ss_pred Eeee
Q psy4754 184 LFDL 187 (304)
Q Consensus 184 ~~d~ 187 (304)
+.|+
T Consensus 628 L~d~ 631 (776)
T COG5167 628 LTDV 631 (776)
T ss_pred EEec
Confidence 5554
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.86 E-value=24 Score=28.67 Aligned_cols=179 Identities=14% Similarity=0.144 Sum_probs=81.0
Q ss_pred EEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeE
Q psy4754 31 SVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 31 ~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~ 107 (304)
.+... +|.++.+.+. ...|+.||+.+++.+..-.-..+.+..=-+..-+..+.--.| |+. ...+|.++-+++..
T Consensus 50 GL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egv--af~~d~~t~~~lg~ 126 (262)
T COG3823 50 GLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGV--AFKYDADTLEELGR 126 (262)
T ss_pred ceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccce--eEEEChHHhhhhcc
Confidence 34443 4566666654 357999999988765432211122211111111222222222 222 24566555444443
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec----cCcc-cceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL----MGHE-NRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~----~~h~-~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
+.-+.. .-....|++.+..++...++..-|..+.....+. .+.+ ..++.+.+- ||...|-.=.+..|
T Consensus 127 ~~y~Ge-----GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I-- 198 (262)
T COG3823 127 FSYEGE-----GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRI-- 198 (262)
T ss_pred cccCCc-----ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecce--
Confidence 332221 2333455566666555556666665443332221 1110 112223332 55555544333332
Q ss_pred EEeeecCCceEEEeecCce----------eeeeeEEEEcCCC-CEEEEE
Q psy4754 183 RLFDLRADKEVACYKKDSI----------LFGATSVDFSVSG-RLLFAG 220 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~s~~g-~~l~sg 220 (304)
...+..+++.+..+..... ..-.+.+++.|++ +++++|
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3456666666555432111 1123678888886 566666
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=82.55 E-value=40 Score=31.01 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=33.8
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceecc-----CcccceeEEEEcCCC
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLM-----GHENRVSCLQVSPDG 168 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~-----~h~~~v~~v~~sp~~ 168 (304)
...++|.|+++.|++--..|.|++++..+.. .+..+. .-..-...|+++|+-
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4578899999777665446999998754322 111111 124668899999985
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=80.72 E-value=59 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=26.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKC 58 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~ 58 (304)
...++|+|...++|.|...|.|++|-..-.
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecccce
Confidence 577999999999999999999999986543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.45 E-value=8.1 Score=21.67 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=22.0
Q ss_pred CCCCEE-EEeeCCCcEEEEeCCCceeeeeecC
Q psy4754 36 VSGRLL-FAGYNDYTINVWDSLKCCRVNHLMG 66 (304)
Q Consensus 36 ~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~ 66 (304)
|+++.| ++...+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 566644 4555689999999988877666543
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=80.45 E-value=59 Score=31.61 Aligned_cols=222 Identities=11% Similarity=0.040 Sum_probs=99.6
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEec--cceeeceeeeEEcCC
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSILFGATSVDFSVS 125 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~--~~~~~~~~~~~~s~~ 125 (304)
-.|+||+.. |..+.++.-..+.+..+.|+.+. .|+.-..|+++ .++++-.... ..... +.....+.-+.+..+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v--~Vy~~~ge~i-e~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTV--HVYGLLGEFI-ESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceE--EEeecchhhh-cccccccccccCceeEEEEecC
Confidence 457888874 55555444334477889998765 45556788886 5677643211 11000 000011223333334
Q ss_pred CCEEEEEeCCCeEEEecCCccccceec---cCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCce
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~ 201 (304)
|-.++ ..+|.+.+-.-.....+.++ .....+-+|-...+++ +...--..+..+...++-.... ....+.....
T Consensus 139 GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-~~q~~~~~~~ 215 (829)
T KOG2280|consen 139 GVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-RVQLHALSWP 215 (829)
T ss_pred ceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc-cccccccCCC
Confidence 53333 33455555432221111111 1111111232222222 1111001111110011111111 1111111111
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee--ccccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
...+..++.||+.++|+-=..+|.|.+-+....+.+.++. .|. +...++|--+. -++.+.+..+.+.....++-+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V~ 292 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND--AVVLSWEVNLMLVGPPGDSVQ 292 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC--ceEEEEeeeEEEEcCCCCccc
Confidence 1245678899999999998888998887766555554443 232 22356664333 334455666666655444433
Q ss_pred h
Q psy4754 280 Y 280 (304)
Q Consensus 280 ~ 280 (304)
|
T Consensus 293 f 293 (829)
T KOG2280|consen 293 F 293 (829)
T ss_pred c
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 304 | ||||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-42 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 9e-34 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 9e-34 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 9e-34 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-33 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-33 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-24 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-13 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-13 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-13 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-13 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 8e-13 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-13 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-13 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-13 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-13 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-13 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 9e-13 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 9e-13 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 9e-13 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-13 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-12 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-11 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-10 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-10 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-09 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 3e-08 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-08 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-08 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-07 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 1e-06 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 3e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-06 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-06 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-05 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-04 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 3e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 9e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 6e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-04 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 8e-04 |
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 304 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.86 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.84 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.8 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.79 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.79 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.77 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.77 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.76 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.76 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.72 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.72 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.72 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.69 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.68 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.65 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.64 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.64 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.63 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.63 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.63 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.63 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.58 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.58 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.58 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.53 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.47 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.47 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.46 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.46 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.46 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.43 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.37 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.37 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.33 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.32 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.25 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.21 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.19 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.18 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.15 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.15 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.14 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.11 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.1 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.07 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.04 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.01 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.0 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.99 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.97 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.97 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.91 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.9 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.9 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.89 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.88 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.88 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.86 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.85 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.77 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.72 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.72 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.62 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.62 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.62 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.61 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.6 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.58 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.57 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.56 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.53 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.48 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.43 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.42 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.37 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.36 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.36 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.35 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.34 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.32 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.32 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.29 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.28 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.25 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.25 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.25 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.23 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.22 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.19 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.12 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.08 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.02 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.01 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.97 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.95 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.94 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.91 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.9 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.9 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.89 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.89 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.79 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.78 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.71 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.71 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.63 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.62 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.62 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.62 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.6 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.6 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.6 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.53 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.41 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.4 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.39 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.35 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.33 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.25 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.24 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.23 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.2 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.1 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.1 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.98 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.82 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.8 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.6 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.56 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.55 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.31 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.18 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.03 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.03 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.89 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.87 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.87 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.81 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.72 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.71 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.53 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.5 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.65 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.41 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.36 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.88 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.78 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.95 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 91.89 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 91.24 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.22 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 89.73 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 87.64 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 86.67 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 85.65 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 82.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 81.18 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-47 Score=328.44 Aligned_cols=264 Identities=18% Similarity=0.260 Sum_probs=238.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|||||+.+++....+....+...|.+++|++++.++++|+.|++|++||+.+++.+..+..|...+.+++|+|+++
T Consensus 56 ~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~ 135 (321)
T 3ow8_A 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135 (321)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS
T ss_pred CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC
Confidence 47899999999886655555566666799999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+.+ ++||+...+....+..+. ..+.+++|+|+++++++|+.|+.|++||+.+++.+.++.+|..+|.+
T Consensus 136 ~l~~g~~dg~v--~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (321)
T 3ow8_A 136 YLATGTHVGKV--NIFGVESGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211 (321)
T ss_dssp EEEEECTTSEE--EEEETTTCSEEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCE
T ss_pred EEEEEcCCCcE--EEEEcCCCceeEEecCCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeE
Confidence 99999999995 789999887776655433 24678999999999999999999999999999888899999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++|+|++++|++++.|++| ++||+++.+....+..+. ..+.+++|+|++++|++|+.|++|++||+.+++++.++.
T Consensus 212 l~~spd~~~l~s~s~dg~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGYI--KIYDVQHANLAGTLSGHA--SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp EEECTTSCEEEEECTTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeE--EEEECCCcceeEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence 9999999999999999996 699999888777776554 357899999999999999999999999999999999999
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+|.+.|++++|+|++.+|++++.|++|++||.
T Consensus 288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=323.27 Aligned_cols=262 Identities=34% Similarity=0.546 Sum_probs=233.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s 77 (304)
.|++|++||+.+++.+..++. +...|.+++|+|++++|++|+.|+.|++|++.+. .....+.+|.+.|.++.|+
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (340)
T 1got_B 75 QDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152 (340)
T ss_dssp TTTEEEEEETTTCCEEEEEEC--SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE
T ss_pred CCCcEEEEECCCCCcceEeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC
Confidence 478999999999987766553 3455999999999999999999999999998764 3456678999999999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
+++. +++++.|+++ ++||+.+++.+..+..+. ..+.++.|+|++.++++|+.|+.|++||+++...+..+.+|..
T Consensus 153 ~~~~-l~s~s~d~~i--~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~ 227 (340)
T 1got_B 153 DDNQ-IVTSSGDTTC--ALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227 (340)
T ss_dssp ETTE-EEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred CCCc-EEEEECCCcE--EEEECCCCcEEEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC
Confidence 8765 8899999995 789999988887776543 2578999999999999999999999999999888888999999
Q ss_pred ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 158 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
.|.+++|+|+++.|++|+.|+++ ++||++..+.+..+........+.+++|+|+|++|++|+.|+.|++||..++..+
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v--~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATC--RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CEEEEEEcCCCCEEEEEcCCCcE--EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 99999999999999999999996 6999998887777655544456899999999999999999999999999999999
Q ss_pred EEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 238 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
..+.+|.++|.+++|+|+|.+|+|||.|++|++|+
T Consensus 306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=333.92 Aligned_cols=262 Identities=23% Similarity=0.352 Sum_probs=237.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .|...|.+++|+|++++|++|+.||+|++||+.+++.++.+.+|...|.+++|+|+++
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~ 205 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205 (410)
T ss_dssp SSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC
Confidence 47899999999998766554 3445699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+++ ++||+.++..+..+..+.. .+..+.+++++.++++|+.|+.|++||+.+......+.+|...|.+
T Consensus 206 ~l~s~s~D~~i--~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 206 HIVSASRDKTI--KMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281 (410)
T ss_dssp EEEEEETTSEE--EEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEEeCCCeE--EEEECCCCcEEEEEeCCCc--cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEE
Confidence 99999999995 7899999888877765432 4678899999999999999999999999988888889999999999
Q ss_pred EEEcCC--------------------CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 162 LQVSPD--------------------GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 162 v~~sp~--------------------~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
++|+|+ +.++++|+.|+++ ++||+++++.+..+..+. ..+.+++|+|+|++|++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i--~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI--KMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE--EEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEE
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE--EEEECCCCceEEEEECCC--CcEEEEEEcCCCCEEEEEe
Confidence 999996 6689999999996 699999998888776654 3578999999999999999
Q ss_pred CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 222 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.|++|++||..+++.+..+.+|...|++++|+|++.+|+|||.|++|++|+.
T Consensus 358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999999999999999999999999999999999999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=317.47 Aligned_cols=263 Identities=39% Similarity=0.563 Sum_probs=231.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeeeeecCCcCcEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC------CRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~------~~~~~~~~h~~~V~~l~ 75 (304)
.|++|++||..+++....+.. +...|.+++|+|+|.++++|+.|+.+++|++... .....+.+|.+.|.+++
T Consensus 84 ~Dg~v~vWd~~~~~~~~~~~~--~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 161 (354)
T 2pbi_B 84 QDGKVIVWDSFTTNKEHAVTM--PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACS 161 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEEC--SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEE
T ss_pred CCCeEEEEECCCCCcceEEec--CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEE
Confidence 478999999999887665543 3345899999999999999999999999997532 33456678999999999
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceecc
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
|+|+++.|++++.|+++ ++||+.+++.+..+..+.. .+.++.++| ++.++++|+.|+.|++||+++++.+..+.
T Consensus 162 ~~~~~~~l~t~s~D~~v--~lwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~ 237 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTC--ALWDVESGQLLQSFHGHGA--DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237 (354)
T ss_dssp ECSSSSEEEEEETTSEE--EEEETTTCCEEEEEECCSS--CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeCCCCEEEEEeCCCcE--EEEeCCCCeEEEEEcCCCC--CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 99999999999999995 7899999888877765542 456777776 56899999999999999999998888899
Q ss_pred CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
+|...|.+++|+|++..|++|+.|+++ ++||++..+.+..+..+.....+.+++|+|+|++|++|+.|++|++||+.+
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v--~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATC--RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeE--EEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence 999999999999999999999999996 699999887777666554445678999999999999999999999999999
Q ss_pred ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 234 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+..+..+.+|.++|++++|+|+|++|++||.|++|++|+
T Consensus 316 ~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=310.56 Aligned_cols=249 Identities=21% Similarity=0.293 Sum_probs=217.6
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
+...|++++|+|++++|++|+.||+|++||+.+++.++.+..|..+|.+++|+|++++|++|+.|++| ++||+.+++.
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i--~vwd~~~~~~ 89 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI--RVFNYNTGEK 89 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE--EEEETTTCCE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE--EEEECCCCcE
Confidence 34459999999999999999999999999999999999999999999999999999999999999995 7899999888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCcccceeEEEEcC-CCcEEEEeecCCceEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRC 182 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i 182 (304)
+..++.+. ..+.+++|+|++.++++|+.|++|++||+.+.. ....+.+|...|.+++|+| ++..|++|+.|++|
T Consensus 90 ~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v-- 165 (304)
T 2ynn_A 90 VVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV-- 165 (304)
T ss_dssp EEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE--
T ss_pred EEEEeCCC--CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE--
Confidence 87776654 357899999999999999999999999988763 4456789999999999999 67899999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
++||++.......+.... ...+..+.|+| ++++|++|+.|++|++||+.+++++.++.+|...|.+++|+|++.+|+
T Consensus 166 ~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 689998776544443221 12456777876 788999999999999999999999999999999999999999999999
Q ss_pred EeecCCeeeeccccccchhh
Q psy4754 261 SGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 261 sgs~D~~i~~~~~~~~~~~~ 280 (304)
||+.|++|++|+.....+..
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp EEETTSCEEEEETTTCCEEE
T ss_pred EEcCCCeEEEEECCCCceee
Confidence 99999999999987654333
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=318.11 Aligned_cols=267 Identities=24% Similarity=0.305 Sum_probs=233.3
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|...|++++|+|++++|++|+.||+|++||..+++..+.+.+|.++|.+++|+|++++|++|+.|++| ++||+...+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i--~iwd~~~~~~ 184 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI--KLWDFQGFEC 184 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC--CEEETTSSCE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE--EEEeCCCCce
Confidence 44459999999999999999999999999999999999999999999999999999999999999996 6899988877
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
+..+..+. ..+.++.|+|+++++++|+.|++|++||+.++.++.++.+|...|.++.++|+++.+++|+.|+++ ++
T Consensus 185 ~~~~~~h~--~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v--~v 260 (410)
T 1vyh_C 185 IRTMHGHD--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV--RV 260 (410)
T ss_dssp EECCCCCS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EE
T ss_pred eEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE--EE
Confidence 76665443 357899999999999999999999999999998888999999999999999999999999999996 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCceeeEEeeccc
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVS--------------------GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 244 (304)
||+++.+....+..+. ..+.+++|+|+ |.+|++|+.|++|++||+.++.++..+.+|.
T Consensus 261 wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 338 (410)
T 1vyh_C 261 WVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338 (410)
T ss_dssp EETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EECCCCceeeEecCCC--ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence 9999888777776554 35789999996 6799999999999999999999999999999
Q ss_pred cceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 245 NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 245 ~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
.+|.+++|+|+|++|++|+.|++|++|+...+.....+. .+.. =..+.|.|++..
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN----AHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE----CCSSCEEEEEECSSSSC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc----CCCCcEEEEEEcCCCCE
Confidence 999999999999999999999999999986654333222 2222 245677776654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=310.51 Aligned_cols=264 Identities=29% Similarity=0.407 Sum_probs=223.5
Q ss_pred CceeEEeeccccceEeeeecccc----------------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI----------------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~ 66 (304)
++++++|++.+++.+..+..+.. ...|++++|+|+|++|++|+.|++|++||+.+++.+..+.+
T Consensus 84 ~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 163 (393)
T 1erj_A 84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 163 (393)
T ss_dssp BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 57899999999987655543211 11389999999999999999999999999999999999999
Q ss_pred CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCc
Q psy4754 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 67 h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~ 145 (304)
|...|.+++|+|++++|++|+.|+++ ++||+.+++....+..+. .+.+++++| ++.++++|+.|+.|++||+.+
T Consensus 164 h~~~v~~~~~~p~~~~l~s~s~d~~v--~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 164 HEQDIYSLDYFPSGDKLVSGSGDRTV--RIWDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEEcCCCCEEEEecCCCcE--EEEECCCCeeEEEEEcCC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 99999999999999999999999995 789999888776665432 467889998 899999999999999999988
Q ss_pred cccceec-------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce------------EEEeecCceeeeee
Q psy4754 146 CCRVNHL-------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE------------VACYKKDSILFGAT 206 (304)
Q Consensus 146 ~~~~~~~-------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~------------~~~~~~~~~~~~~~ 206 (304)
+..+..+ .+|...|.+++|+|+++.+++++.|+++ ++||++.... ...+..+. ..+.
T Consensus 239 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v--~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~ 314 (393)
T 1erj_A 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV--KLWNLQNANNKSDSKTPNSGTCEVTYIGHK--DFVL 314 (393)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE--EEEEC---------------CEEEEEECCS--SCEE
T ss_pred CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE--EEEECCCCCCcccccCCCCCcceEEEeccc--CcEE
Confidence 7665544 5799999999999999999999999996 6899875322 22333332 3478
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc------CCCEEEEeecCCeeeeccccc
Q psy4754 207 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP------DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp------~g~~lasgs~D~~i~~~~~~~ 275 (304)
+++|+|++++|++|+.|+.|++||..++..+..+.+|.+.|.+++|+| ++.+|||||.|++||+|+...
T Consensus 315 ~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999999999999999999999999999999999986 688999999999999998754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=301.89 Aligned_cols=269 Identities=22% Similarity=0.269 Sum_probs=228.7
Q ss_pred cccccceeEEEEcCC----CCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEE
Q psy4754 23 DSILFGATSVDFSVS----GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~----g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~ 96 (304)
..|...|.+++|+|+ +.+|+||+.|++|++|+..+++ ....+.+|...|.+++|++++.+++|++.|+++ ++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i--~l 106 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI--RL 106 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE--EE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE--EE
Confidence 345566999999985 5699999999999999987654 344688999999999999999999999999995 78
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
||+.+++.+..+..+. ..+.+++|+|+++++++|+.|+.|++||+.+.+....+..|...|.+++|+|+++++++|+.
T Consensus 107 Wd~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EETTTTEEEEEEECCT--TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCEEEEEeCCC--ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 9999988887765543 24567899999999999999999999999988888888889999999999999999999999
Q ss_pred CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCC
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 256 (304)
|+.+ ++||+++++.+..+..+. ..+.+++|+|++++|++|+.|++|++||+.++..+..+.+|...|.+++|+|++
T Consensus 185 dg~i--~iwd~~~~~~~~~~~~h~--~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 185 DGII--NIFDIATGKLLHTLEGHA--MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp TSCE--EEEETTTTEEEEEECCCS--SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCeE--EEEECCCCcEEEEEcccC--CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 9996 699999988887776554 367899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 257 TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 257 ~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
.+|++|+.|++|++|++..+.+...+. .+.. =..+.|+|+++.
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTRTCVHTFF----DHQDQVWGVKYNGNGSK 304 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSE
T ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEEc----CCCCcEEEEEECCCCCE
Confidence 999999999999999987655333332 2222 245777777653
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=327.17 Aligned_cols=292 Identities=20% Similarity=0.204 Sum_probs=226.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-------CCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-------GHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-------~h~~~V~~l 74 (304)
.|++|++||..++++...+. .|...|.+++|+|+|++|++|+.|++|++||..+++.+..+. +|.++|.++
T Consensus 168 ~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 168 DDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 245 (611)
T ss_dssp TTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred CCCeEEEEECCCCeEeeeec--cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEE
Confidence 47899999999887766544 345569999999999999999999999999999988877773 799999999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc-----------------------------------------ce
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----------------------------------------SI 113 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~-----------------------------------------~~ 113 (304)
+|+|++++|+|++.|+++ ++||+.+.+.+..+... .+
T Consensus 246 ~~spdg~~l~s~s~D~~v--~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh 323 (611)
T 1nr0_A 246 TWSPDGTKIASASADKTI--KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323 (611)
T ss_dssp EECTTSSEEEEEETTSEE--EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EECCCCCEEEEEeCCCeE--EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence 999999999999999995 78999877665443210 11
Q ss_pred eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-c---------------------------------------
Q psy4754 114 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-M--------------------------------------- 153 (304)
Q Consensus 114 ~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~--------------------------------------- 153 (304)
...+.+++|+|+++++++++.|+.|++||+.++.....+ .
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc
Confidence 124678999999999999999999999998764322111 0
Q ss_pred ------------------------------------------CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc
Q psy4754 154 ------------------------------------------GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 191 (304)
Q Consensus 154 ------------------------------------------~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~ 191 (304)
.|...+.+++|+||++++|+|+.|++| ++||+.+.+
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v--~lwd~~~~~ 481 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV--HVYKLSGAS 481 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE--EEEEEETTE
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE--EEEEccCCc
Confidence 123457789999999999999999996 689998754
Q ss_pred eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceeeEE--eeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 192 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNH--LMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~~~--~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
...... ..+...+++++|+|+|++|++++.|++|++|+..+ ++.+.. +.+|...|++++|+|||++|||||.|++|
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 321111 11224679999999999999999999999999887 555443 34499999999999999999999999999
Q ss_pred eeccccccchhheeeccccCC-ce-eEEEEEecCCc
Q psy4754 269 RDEESKNRYMQYLLRSRITKP-TQ-GLTVYFQDRGR 302 (304)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 302 (304)
|+|+...+..... .....+ .. =..+.|+|+++
T Consensus 561 ~lW~~~~~~~~~~--~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 561 IVWNMNKPSDHPI--IIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp EEEETTCTTSCCE--EETTSSTTSCEEEEEEEETTE
T ss_pred EEEECCCcccccc--hhhccCcccCeeEEEEcCCCE
Confidence 9999866432110 011122 22 35577788775
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=305.81 Aligned_cols=272 Identities=20% Similarity=0.223 Sum_probs=215.4
Q ss_pred CCceeEEeeccccceEeeee-ccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~-~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|||||+.+++...... ...+...|.+++|+|+|++|++|+.|+++++||..++ +.+..+.+|.++|.+++|+|
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 47899999999886432222 2345556999999999999999999999999998765 45778899999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEe-ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceeccCc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGH 155 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h 155 (304)
++++|++|+.|+++ ++||+.......+.. ...+...+.++.|+|++.++++|+.|+.|++||..+.. ...++.+|
T Consensus 116 ~~~~l~s~s~D~~v--~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h 193 (345)
T 3fm0_A 116 SGNLLATCSRDKSV--WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193 (345)
T ss_dssp TSSEEEEEETTSCE--EEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCEEEEEECCCeE--EEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC
Confidence 99999999999995 789998664332221 11122347889999999999999999999999987654 34578899
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc---------------eEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK---------------EVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
...|.+++|+|++++|++++.|++| ++|+..... .+..+... +...+.+++|+|++..|+++
T Consensus 194 ~~~v~~l~~sp~g~~l~s~s~D~~v--~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~ 270 (345)
T 3fm0_A 194 ESTVWSLAFDPSGQRLASCSDDRTV--RIWRQYLPGNEQGVACSGSDPSWKCICTLSGF-HSRTIYDIAWCQLTGALATA 270 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCE--EEEEEECTTCTTCCCCC---CEEEEEEEECSS-CSSCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCeE--EEeccccCCCCccceeeccCCccceeEEecCC-CCCcEEEEEEecCCCEEEEE
Confidence 9999999999999999999999996 689864321 12222211 12357899999999999999
Q ss_pred eCCCcEEEEeCCCce---------eeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccch
Q psy4754 221 YNDYTINVWDSLKCC---------RVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+.|+.|++|+..... ......+|...|++|+|+|++ .+|||||.|++|++|+...+..
T Consensus 271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 999999999865431 122345799999999999998 5999999999999999876553
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=300.38 Aligned_cols=263 Identities=20% Similarity=0.269 Sum_probs=221.4
Q ss_pred CCceeEEeeccccce---EeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~---~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|++||+.+... .+......|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|
T Consensus 38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 117 (319)
T 3frx_A 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117 (319)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC
Confidence 478999999986432 11222234556699999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC------CCEEEEEeCCCeEEEecCCccccceec
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS------GRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~------~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
++++|++|+.|+++ ++||+... .+..+..+. ..+.++.++|. +..+++++.|+.|++||+.+.+....+
T Consensus 118 ~~~~l~s~s~D~~i--~vwd~~~~-~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 192 (319)
T 3frx_A 118 KASMIISGSRDKTI--KVWTIKGQ-CLATLLGHN--DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192 (319)
T ss_dssp TSCEEEEEETTSCE--EEEETTSC-EEEEECCCS--SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeE--EEEECCCC-eEEEEeccC--CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence 99999999999996 68998743 444443332 24567888874 458999999999999999988888888
Q ss_pred cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 153 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 153 ~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
.+|...|.+++|+|++++|++++.|++| ++||+++.+.+..+..+. .+.+++|+|++.+|+++.. ..+++|++.
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~-~~i~v~~~~ 266 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEI--MLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVFSLD 266 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEE--EEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEET-TEEEEEEET
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeE--EEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcC-CCcEEEEeC
Confidence 9999999999999999999999999996 699999988877776543 5789999999999999875 469999988
Q ss_pred CceeeEEee--------ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 233 KCCRVNHLM--------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 233 ~~~~~~~~~--------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
....+..+. .|...+.+++|+|||++|++|+.|++|++|+...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp TEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 776666554 3467899999999999999999999999998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=315.68 Aligned_cols=268 Identities=29% Similarity=0.466 Sum_probs=226.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-------eeeeecCCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-------RVNHLMGHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-------~~~~~~~h~~~V~~l 74 (304)
.|++|+|||+.+++....+.. +...|.+++|+|+|++|++|+.|+.+++||+.+.. ..+.+.+|.+.|.++
T Consensus 86 ~D~~v~iWd~~~~~~~~~~~~--h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~ 163 (380)
T 3iz6_a 86 QDGRLIVWNALTSQKTHAIKL--HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163 (380)
T ss_dssp TTSEEEEEETTTTEEEEEEEC--CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCC
T ss_pred CCCeEEEEECCCCccceEEec--CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEE
Confidence 478999999999987766553 34459999999999999999999999999986432 345678999999999
Q ss_pred EECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEecc---ceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCC-cccc
Q psy4754 75 QVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSV-SGRLLFAGYNDYTINVWDSL-KCCR 148 (304)
Q Consensus 75 ~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~---~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~-~~~~ 148 (304)
.|+|++ ..|+||+.|+++ ++||+.+++.+..+... .+...+.++.+++ ++.++++|+.|+.|++||++ ....
T Consensus 164 ~~~~~~~~~l~s~s~D~~i--~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 164 QYVPDQETRLITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp BCCSSSSSCEEEECTTSCE--EEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred EEecCCCCEEEEECCCCcE--EEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 999974 579999999995 78999988877665321 1223467788876 78899999999999999987 4466
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce-----eeeeeEEEEcCCCCEEEEEeCC
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-----LFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~sg~~d 223 (304)
+..+.+|...|.+++|+|+++.|++|+.|+++ ++||+++++.+..+..+.. ...+++++|+|+|++|++|+.|
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i--~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 319 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC--RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCE--EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeE--EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC
Confidence 77889999999999999999999999999996 6999999888777643321 1236899999999999999999
Q ss_pred CcEEEEeCCCceeeEEe----eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 224 YTINVWDSLKCCRVNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~----~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+.|++||..+++.+..+ .+|.+.|++++|+|+|.+|+|||.|++|++|++..
T Consensus 320 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 99999999888877776 67999999999999999999999999999998754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=308.96 Aligned_cols=241 Identities=19% Similarity=0.212 Sum_probs=202.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee----ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH----LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~----~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.+|.+++|+|++ .|++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|++++|++|+.|++| ++||+.++
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i--~iwd~~~~ 159 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI--KVWDLAQQ 159 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTT
T ss_pred CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeE--EEEECCCC
Confidence 348999999985 677999999999999988865443 45899999999999999999999999995 78999999
Q ss_pred eeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceecc--CcccceeEEEEcCC-CcEEEEeecCC
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPD-GTAFSSGSWDT 178 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~-~~~las~s~d~ 178 (304)
+.+..+..+. ..+.++.|++++. .+++++.|+.|++||+++.+...++. .|...+.+++|+|+ ++++++|+.|+
T Consensus 160 ~~~~~~~~h~--~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 160 VVLSSYRAHA--AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp EEEEEECCCS--SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred cEEEEEcCcC--CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 8888776543 3578899999875 78999999999999999887776653 45667999999995 57899999999
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+| ++||+++++.+..+..+. ..+++++|+|++ ++|++|+.|++|+|||..+++.+ .+.+|.+.|++|+|+|++.
T Consensus 238 ~v--~~wd~~~~~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 238 TV--SLVDTKSTSCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp EE--EEEESCC--CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSST
T ss_pred cE--EEEECCCCcEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCC
Confidence 96 689999998888877654 367999999998 57999999999999999888654 5789999999999999986
Q ss_pred -EEEEeecCCeeeeccccccc
Q psy4754 258 -AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 258 -~lasgs~D~~i~~~~~~~~~ 277 (304)
+|+|||.|++|++|+.+.+.
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 57799999999999886654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=295.82 Aligned_cols=261 Identities=19% Similarity=0.258 Sum_probs=222.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++++..+.. +...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|+++
T Consensus 33 ~dg~v~lWd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 110 (304)
T 2ynn_A 33 YSGRVELWNYETQVEVRSIQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCcEEEEECCCCceeEEeec--cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC
Confidence 488999999999988766553 345699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCee-EeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceec-cCcccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~-~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~ 158 (304)
+|+||+.|+++ ++||+..... ...+..+. ..+.+++|+| ++..+++|+.|+.|++||+.+......+ .+|...
T Consensus 111 ~l~sgs~D~~v--~lWd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~ 186 (304)
T 2ynn_A 111 YVLSGSDDLTV--KLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (304)
T ss_dssp EEEEEETTSCE--EEEEGGGTTEEEEEECCCC--SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred EEEEECCCCeE--EEEECCCCcchhhhhcccC--CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCc
Confidence 99999999996 7899987633 33444332 3578999999 6789999999999999999876655544 456688
Q ss_pred eeEEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 159 VSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 159 v~~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+..+.|+| +++++++++.|++| ++||+++.+.+..+..+. ..+.+++|+|++++|++|+.|++|++||..+++.
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i--~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTI--KIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEE--EEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeE--EEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 99999987 77899999999996 699999998888887664 4678999999999999999999999999999999
Q ss_pred eEEeeccccceEEEEEccCCC--EEEEeecCCeeeeccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEES 273 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~ 273 (304)
+.++..|...+++++|+|++. ++|+|+.|+ +.+|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 999999999999999999875 577777555 555544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=302.85 Aligned_cols=265 Identities=15% Similarity=0.236 Sum_probs=212.6
Q ss_pred CCceeEEeeccccce-----EeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKE-----VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 76 (304)
.|++||+||+.+.+. .+......|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|..+|.+++|
T Consensus 47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 126 (343)
T 2xzm_R 47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126 (343)
T ss_dssp TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEE
T ss_pred CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence 478999999986531 122223345556999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC----------CEEEEEeCCCeEEEecCCcc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG----------RLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~----------~~l~sg~~dg~i~iwd~~~~ 146 (304)
+|++++|++|+.|+++ ++||+.................+.++.|+|++ .++++++.|+.|++||. +.
T Consensus 127 sp~~~~l~s~~~d~~i--~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~ 203 (343)
T 2xzm_R 127 SPDNRQILSAGAEREI--KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NF 203 (343)
T ss_dssp CSSTTEEEEEETTSCE--EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TT
T ss_pred CCCCCEEEEEcCCCEE--EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CC
Confidence 9999999999999996 78998744332211111222346788999886 78999999999999994 44
Q ss_pred ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
.....+.+|...|.+++|+|++++|++|+.|+++ ++||++.. .....+... ..+.+++|+|++++++++. |+.
T Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v--~iwd~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~~-d~~ 277 (343)
T 2xzm_R 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL--LIWDILNLTYPQREFDAG---STINQIAFNPKLQWVAVGT-DQG 277 (343)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE--EEEESSCCSSCSEEEECS---SCEEEEEECSSSCEEEEEE-SSC
T ss_pred ceeEEEcCccccceEEEECCCCCEEEEEcCCCeE--EEEECCCCcccceeecCC---CcEEEEEECCCCCEEEEEC-CCC
Confidence 5566788999999999999999999999999996 68998443 333333222 2478999999999887664 778
Q ss_pred EEEEeCCCceeeE--Eee-----------ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 226 INVWDSLKCCRVN--HLM-----------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 226 i~iwd~~~~~~~~--~~~-----------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
|++||+.++.... .+. +|...|.+++|+|+|.+|++|+.|++|++|+...
T Consensus 278 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 278 VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 9999987765433 333 6888999999999999999999999999998754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=299.42 Aligned_cols=266 Identities=20% Similarity=0.225 Sum_probs=204.3
Q ss_pred CCceeEEeeccccc--eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-------ceeeeeecCCcCcEE
Q psy4754 2 GKNHCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-------CCRVNHLMGHENRVS 72 (304)
Q Consensus 2 ~~~~v~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-------~~~~~~~~~h~~~V~ 72 (304)
.|++|++||+.++. ....+....|...|.+++|+|++++|++|+.|++|++||... .+.+..+.+|.++|.
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 47899999998863 223222222555699999999999999999999999999843 345677889999999
Q ss_pred EEEECCCCCeEEEEeCCCceEEEEeeeCCC----eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc--
Q psy4754 73 CLQVSPDGTAFSSGSWDTTLRCRLFDLRAD----KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-- 146 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-- 146 (304)
+++|+|++++|++|+.|+++ ++||+... +.+..+..+. ..+.++.|+|++.+|++|+.|++|++||..+.
T Consensus 112 ~v~~sp~g~~las~s~D~~v--~iwd~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 112 GVAWSNDGYYLATCSRDKSV--WIWETDESGEEYECISVLQEHS--QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp EEEECTTSCEEEEEETTSCE--EEEECCTTCCCCEEEEEECCCS--SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE
T ss_pred EEEECCCCCEEEEEeCCCEE--EEEeccCCCCCeEEEEEeccCC--CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe
Confidence 99999999999999999996 78999432 2334444332 35789999999999999999999999997654
Q ss_pred ccceeccCcccceeEEEEcCC--CcEEEEeecCCceEEEEeeecCC--------ceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 147 CRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRAD--------KEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~--~~~las~s~d~~i~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
+++..+.+|...|.+++|+|+ +..+++++.|+++ ++||++.. .....+.. .+...+.+++|++++ +
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v--~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~ 263 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV--RVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-L 263 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE--EEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-C
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE--EEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-E
Confidence 567788999999999999998 6789999999996 68998654 22222222 122467899999765 8
Q ss_pred EEEEeCCCcEEEEeCCCce--eeEE-eecccc-ceEEEEEcc--CCCEEEEeecCCeeeeccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCC--RVNH-LMGHEN-RVSCLQVSP--DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~--~~~~-~~~h~~-~i~~l~~sp--~g~~lasgs~D~~i~~~~~~~ 275 (304)
|++++.|++|++||..+++ .+.. ..+|.. .|.+++|+| ++.+|||||.|++|++|+.+.
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 8999999999999987763 2333 357887 899999999 789999999999999998753
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=304.39 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=209.9
Q ss_pred CceeEEeeccccceEeeeec--cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee----eecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKK--DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN----HLMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~--~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~----~~~~h~~~V~~l~~ 76 (304)
|++|++|+..++.....+.. ..+..+|++++|+|++.++ +++.||+|+|||+.+++... ...+|.+.|.+++|
T Consensus 69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 67899999988754322222 1233459999999998655 67789999999998876432 23489999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceec--c
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHL--M 153 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~--~ 153 (304)
+|++++|++|+.|++| ++||+.+.+.+..++.+. ..+.+++|++++. ++++++.|+.|++||+++.+....+ .
T Consensus 148 spdg~~l~sgs~dg~v--~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSV--KVWDLSQKAVLKSYNAHS--SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp CSSSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred CCCCCEEEEEeCCCeE--EEEECCCCcEEEEEcCCC--CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 9999999999999995 789999998888776543 3568899999875 7889999999999999887765543 4
Q ss_pred CcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeC
Q psy4754 154 GHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDS 231 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~ 231 (304)
.|...+.+++|+|++ ++|++|+.|+.| ++||+++.+.+..+..+. ..+++++|+|++ ++|++|+.|++|+|||+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i--~~wd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNV--SLVNIKNPDSAQTSAVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCE--EEEESSCGGGCEEECCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred cccccccchhhhhcccceEEEeecccce--eEEECCCCcEeEEEeccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 577789999999974 689999999996 699999988877776554 367999999997 57999999999999999
Q ss_pred CCceeeEEeeccccceEEEEEcc-CCCEEEEeecCCeeeeccccccc
Q psy4754 232 LKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 232 ~~~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.+++.+.. .+|.+.|++|+|+| ++.+|+|||.|++|++|++....
T Consensus 300 ~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 300 DFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99877654 48999999999999 89999999999999999986543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-42 Score=321.69 Aligned_cols=267 Identities=16% Similarity=0.202 Sum_probs=222.5
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~ 80 (304)
+++|++||+.+++....+. .|...|++++|+|+|++||+|+.||+|+|||+.+++ ....+.+|.++|.+++|+||+
T Consensus 38 ~~~v~l~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 115 (611)
T ss_dssp TTEEEEEETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred CCEEEEecCCCcccCeEec--CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC
Confidence 4689999999887665544 345569999999999999999999999999986543 345678999999999999999
Q ss_pred CeEEEEeCCC--ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceeccCccc
Q psy4754 81 TAFSSGSWDT--TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 81 ~~l~sgs~D~--~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
+.|++++.|. ...+++||.. +....+..+ ...+.+++|+|++. .+++|+.|++|++||..+.+...++.+|..
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~gh--~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~ 191 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQ--ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK 191 (611)
T ss_dssp CEEEEEECCSSCSEEEEETTTC--CBCBCCCCC--SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS
T ss_pred CEEEEEECCCCceeEEEEeeCC--CCcceecCC--CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC
Confidence 9999988653 3456889853 333333333 23578999999987 599999999999999988888888999999
Q ss_pred ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-----ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 158 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
.|.+++|+|++++|++++.|+++ ++||+.+++.+..+... .+...+.+++|+|+|++|++++.|++|++||+.
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i--~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTI--VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCE--EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEECCCcE--EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999996 69999888877666321 223468999999999999999999999999988
Q ss_pred CceeeE-------------------------------------------EeeccccceEEEEEccCCCEEEEeecCCeee
Q psy4754 233 KCCRVN-------------------------------------------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 233 ~~~~~~-------------------------------------------~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
+++.+. .+.+|...|++++|+|+|++|++++.|++|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 765543 3457999999999999999999999999999
Q ss_pred eccccccc
Q psy4754 270 DEESKNRY 277 (304)
Q Consensus 270 ~~~~~~~~ 277 (304)
+|+...+.
T Consensus 350 ~Wd~~~~~ 357 (611)
T 1nr0_A 350 SWDISTGI 357 (611)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99987654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=291.18 Aligned_cols=265 Identities=22% Similarity=0.353 Sum_probs=228.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .+...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++
T Consensus 43 ~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
T 4ery_A 43 ADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120 (312)
T ss_dssp TTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCeEEEEeCCCcccchhhc--cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 37899999999988765543 3455699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-cCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~ 160 (304)
+|++|+.|+++ ++||+.+.+.+..+..+. ..+.++.|+|+++++++++.|+.|++||+.+.+.+..+ ..+..++.
T Consensus 121 ~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 196 (312)
T 4ery_A 121 LIVSGSFDESV--RIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196 (312)
T ss_dssp EEEEEETTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEE
T ss_pred EEEEEeCCCcE--EEEECCCCEEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceE
Confidence 99999999995 789999888777665543 24678999999999999999999999999887776654 45667899
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEE-EcCCCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD-FSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
.++|+|+++++++++.|+.+ ++||+++.+.+..+..+.......... ..+++.+|++|+.|+.|++||+.+++.+..
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEECTTSSEEEEEETTTEE--EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcCCCeE--EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 99999999999999999986 699999988877776543222222233 347789999999999999999999999999
Q ss_pred eeccccceEEEEEccCCCEEEEee--cCCeeeecccc
Q psy4754 240 LMGHENRVSCLQVSPDGTAFSSGS--WDTTLRDEESK 274 (304)
Q Consensus 240 ~~~h~~~i~~l~~sp~g~~lasgs--~D~~i~~~~~~ 274 (304)
+.+|.+.|.+++|+|++..|++++ .|++|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999997 69999999753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=301.76 Aligned_cols=280 Identities=19% Similarity=0.181 Sum_probs=211.7
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc-----------eeeeeecCCcCcEEEE
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-----------CRVNHLMGHENRVSCL 74 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~-----------~~~~~~~~h~~~V~~l 74 (304)
-|.|++....+. .+...|.+++|+|||++|++++ |+++++||.... ........|..+|.++
T Consensus 16 ~r~w~~~~~~~~------~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 88 (344)
T 4gqb_B 16 AREWNLPPNAPA------CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADL 88 (344)
T ss_dssp -------CCSCS------SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEE
T ss_pred ccccCCCCCCcc------cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEE
Confidence 356666554321 1223489999999999998887 778888873211 1111223466789999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe--ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
+|+|++ .|++|+.|++| ++||+.+++.+...+ ...+...+.+++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus 89 ~~s~d~-~l~~~s~dg~v--~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 89 TWVGER-GILVASDSGAV--ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EEETTT-EEEEEETTSEE--EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEeCCC-eEEEEECCCEE--EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 999985 68899999995 789998876554432 1122235789999999999999999999999999999999999
Q ss_pred cCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEe
Q psy4754 153 MGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWD 230 (304)
Q Consensus 153 ~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd 230 (304)
.+|...|.+++|+|++ ..|++++.|++| ++||+++++....+........+.+++|+|+ +++|++|+.|++|++||
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRI--LLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCE--EEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred cCcCCceEEEEecCCCCCceeeecccccc--ccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999999988 478999999996 6999999888776644433345789999985 57889999999999999
Q ss_pred CCCceeeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCc
Q psy4754 231 SLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGR 302 (304)
Q Consensus 231 ~~~~~~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 302 (304)
+.+++++.++.+|...|++++|+|++ ++|||||.|++|++||...+.... ...+... ..|.|+|+++
T Consensus 244 ~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-----~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-----SQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp SCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-----ECCCSSCEEEEEECSSST
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-----EcCCCCCEEEEEEeCCCC
Confidence 99999999999999999999999998 579999999999999987654221 2233333 4577888765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=292.80 Aligned_cols=267 Identities=17% Similarity=0.236 Sum_probs=224.1
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...|++++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.+ ++||+....
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v--~iw~~~~~~ 130 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC--SIYNLKTRE 130 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE--EEEETTTCS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE--EEEECccCC
Confidence 344569999999999999999999999999999999999999999999999999999999999999995 789987642
Q ss_pred ----eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 104 ----EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
....+..+. ..+.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++.+++|+.|++
T Consensus 131 ~~~~~~~~~~~h~--~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~ 207 (340)
T 1got_B 131 GNVRVSRELAGHT--GYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp BSCEEEEEEECCS--SCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcceeEEEecCCC--ccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 222233322 2467888988764 889999999999999999888899999999999999999999999999999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCC
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGT 257 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~ 257 (304)
+ ++||+++++....+..+. ..+++++|+|++++|++|+.|++|++||+.+++.+..+.. +...|.+++|+|+|+
T Consensus 208 v--~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 208 A--KLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp E--EEEETTTCSEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred E--EEEECCCCeeEEEEcCCc--CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 6 689999988887776554 3679999999999999999999999999998887776643 335799999999999
Q ss_pred EEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCcc
Q psy4754 258 AFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRS 303 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 303 (304)
+|++|+.|++|++|+.........+ ..+... ..+.|+|+|+.
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~----~~h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEECTTSSC
T ss_pred EEEEECCCCeEEEEEcccCcEeeEe----ecCCCcEEEEEEcCCCCE
Confidence 9999999999999998665433222 223333 45788888764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=302.91 Aligned_cols=286 Identities=15% Similarity=0.114 Sum_probs=210.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeee----eecCCcCcE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVN----HLMGHENRV 71 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~----~~~~h~~~V 71 (304)
|+.+.+.|++....+ ..|...|++++|+|||++||+|+. |++|++|+..++.... ...+|...|
T Consensus 24 g~~~~~~w~~p~~~p------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V 97 (357)
T 4g56_B 24 GSSKGSAWGRPVTAP------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGV 97 (357)
T ss_dssp ----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCE
T ss_pred CCccccccCCCCCCc------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCE
Confidence 345566676654432 124455999999999999999997 7889999987765433 335688999
Q ss_pred EEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE--eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 72 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY--KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 72 ~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
.+++|+|+++ +++++.|++| ++||+.+++..... ....+...+.+++|+|++++|++|+.|+.|++||+.+++.+
T Consensus 98 ~~~~~s~d~~-~l~~s~dg~v--~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 98 TDVAWVSEKG-ILVASDSGAV--ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp EEEEEETTTE-EEEEETTSCE--EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEcCCCC-EEEEECCCEE--EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999999975 5567889995 78999876544322 11122235789999999999999999999999999999989
Q ss_pred eeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEE
Q psy4754 150 NHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTIN 227 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~ 227 (304)
..+.+|...|.+++|+|++. .+++++.|+++ ++||+++++....+........+.+++|+|+ +.+|++|+.|+.|+
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v--~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI--LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCE--EECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCce--EEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence 99999999999999999875 78999999996 6899998877655544333345789999998 56889999999999
Q ss_pred EEeCCCceeeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEec-CCcc
Q psy4754 228 VWDSLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQD-RGRS 303 (304)
Q Consensus 228 iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 303 (304)
+||+.+++.+..+.+|...|++++|+|++ ++||+||.|++|++||.+.+.....+ .+... ..|+|+| +++.
T Consensus 253 ~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-----~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-----SHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp EEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----CCSSCEEEEEECSSSTTE
T ss_pred EEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----CCCCCEEEEEEeCCCCCE
Confidence 99999999999999999999999999987 57999999999999998765433222 23333 3477777 5543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=286.05 Aligned_cols=271 Identities=22% Similarity=0.308 Sum_probs=224.8
Q ss_pred cccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCC-----ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEE
Q psy4754 23 DSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK-----CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~-----~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~ 96 (304)
..|...|++++|+|++ .+|+||+.|++|++|++.. +.+++.+.+|...|.+++|+|++++|+||+.|++| ++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v--~~ 91 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL--RL 91 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE--EE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE--EE
Confidence 3445559999999965 7999999999999999753 34567889999999999999999999999999995 78
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCC------CcE
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD------GTA 170 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~------~~~ 170 (304)
||+.+++.+..+..+. ..+.+++|+|++.++++|+.|++|++||+. ...+..+.+|...|.++.++|. +..
T Consensus 92 wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 92 WDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EETTTTEEEEEEECCS--SCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EECCCCCeeEEEccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 9999998887776543 257899999999999999999999999986 4566778899999999999995 448
Q ss_pred EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEE
Q psy4754 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 250 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l 250 (304)
+++++.|+++ ++||+++.+....+..+. ..+.+++|+|+|++|++|+.|++|++||+.+++.+..+..| .+|.++
T Consensus 169 l~s~~~d~~i--~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 243 (319)
T 3frx_A 169 IISAGNDKMV--KAWNLNQFQIEADFIGHN--SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL 243 (319)
T ss_dssp EEEEETTSCE--EEEETTTTEEEEEECCCC--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred EEEEeCCCEE--EEEECCcchhheeecCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence 9999999996 699999887776665554 46799999999999999999999999999999988888754 689999
Q ss_pred EEccCCCEEEEeecCCeeeeccccccchhheeeccccC-----CceeEEEEEecCCccC
Q psy4754 251 QVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITK-----PTQGLTVYFQDRGRSI 304 (304)
Q Consensus 251 ~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 304 (304)
+|+|++..|++++. ..+++|+++.++.....+..... +..-..++|+|+|+.|
T Consensus 244 ~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 244 AFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp EECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred EEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence 99999999998874 56999988776544333322111 1224679999998754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=308.29 Aligned_cols=255 Identities=24% Similarity=0.382 Sum_probs=219.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++||+||..+.... .+ ..+...+.+++|+|++++|++|+.||+|++||. +++.+..+.+|..+|.+++|+||++
T Consensus 323 ~d~~i~~w~~~~~~~~-~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQ-TL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp TTSCEEEEETTSCEEE-EE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCeEEEEeCCCCeeE-EE--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC
Confidence 4788999998776443 22 234456999999999999999999999999996 4677888899999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++++.|+++ ++||.. .+.+..+..+. ..+.+++|+|+++++++++.|+.|++||. +.+.+..+.+|..+|.+
T Consensus 399 ~l~~~~~d~~v--~~~~~~-~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 399 TIASASDDKTV--KLWNRN-GQLLQTLTGHS--SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp CEEEEETTSEE--EEECTT-CCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred EEEEEeCCCEE--EEEeCC-CCEEEEecCCC--CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 99999999995 689964 45555555443 24678999999999999999999999996 45667788899999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++|+|+++++++++.|++| ++||. +++.+..+..+. ..+++++|+|+|++|++++.|+.|++||. +++++..+.
T Consensus 473 ~~~spd~~~las~~~d~~i--~iw~~-~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTV--KLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEECTTSCEEEEEETTSEE--EEEET-TSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCEE--EEEcC-CCCEEEEEeCCC--CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 9999999999999999996 68995 556667766554 46799999999999999999999999995 678889999
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+|.+.|++++|+|||++|+|+|.|++|++||
T Consensus 547 ~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=301.46 Aligned_cols=288 Identities=20% Similarity=0.241 Sum_probs=226.2
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEE
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 85 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s 85 (304)
+..|++.+..+...+. .|...|++++|+|++++|+||+.||+|++||..+++....+.+|..+|.+++|+|++++|++
T Consensus 48 ~~~~~~~~~~~~~~l~--gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQ--GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp CCCCCCCCCEEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccceeEEeeccc--ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence 4456666655544433 44556999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEeeeCCCee-------EeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceec-----
Q psy4754 86 GSWDTTLRCRLFDLRADKE-------VACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHL----- 152 (304)
Q Consensus 86 gs~D~~i~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~----- 152 (304)
|+.|+++ ++||+..... ...+..+ ...+.++.|+|+ +..+++|+.|++|++||+.+++.+..+
T Consensus 126 ~~~d~~v--~iw~~~~~~~~~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 126 GGLDSAC--SIFNLSSQADRDGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp CCSSSCC--EEEECCCCSSCCCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred eeCCCcE--EEEECCCCccccCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 9999996 6899864321 1111222 123567788886 457999999999999999988776655
Q ss_pred cCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecC-CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 153 MGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 153 ~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.+|...|.+++|+| +++.|++|+.|+++ ++||++. .+.+..+..+. ..+++++|+|++++|++|+.|++|++||
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v--~~wd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTV--RLWDLRITSRAVRTYHGHE--GDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCE--EEEETTTTCCCCEEECCCS--SCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeE--EEEECCCCCcceEEECCcC--CCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 68999999999977 88999999999996 6999984 35555565543 4679999999999999999999999999
Q ss_pred CCCceeeEEeecccc-------ceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCc
Q psy4754 231 SLKCCRVNHLMGHEN-------RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGR 302 (304)
Q Consensus 231 ~~~~~~~~~~~~h~~-------~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 302 (304)
+.++..+..+..|.. .|++++|+|+|++|++|+.|+.|++||...+.....+..-...+... ..|.|+|+|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 999988887765432 48999999999999999999999999976544333222211222222 4577788776
Q ss_pred c
Q psy4754 303 S 303 (304)
Q Consensus 303 ~ 303 (304)
.
T Consensus 358 ~ 358 (380)
T 3iz6_a 358 A 358 (380)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=295.76 Aligned_cols=263 Identities=23% Similarity=0.336 Sum_probs=225.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|++|+|||..++++...+..+.+...|++++|+|+|++||+|+.||+|++||+.+++.++.+.+|...|.+++++ ++.
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~ 201 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYI 201 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCE
Confidence 789999999999988877777666679999999999999999999999999999999999999999999998875 679
Q ss_pred EEEEeCCCceEEEEeeeCCCe-eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc----cceeccCccc
Q psy4754 83 FSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----RVNHLMGHEN 157 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~ 157 (304)
|++|+.|+.+ ++||..... .+..+..+. ..+..+.+++++.++++++.|+.+++||..+.+ .+.....|..
T Consensus 202 l~sgs~d~~i--~~~d~~~~~~~~~~~~~h~--~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 202 LSSGSRSGHI--HHHDVRVAEHHVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp EEEEETTSEE--EEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred EEEEeCCCce--eEeeecccceeeEEecccc--cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence 9999999995 689987543 333344332 246788999999999999999999999987654 3455678999
Q ss_pred ceeEEEEcCCC-cEEEE--eecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe--CCCcEEEEeCC
Q psy4754 158 RVSCLQVSPDG-TAFSS--GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY--NDYTINVWDSL 232 (304)
Q Consensus 158 ~v~~v~~sp~~-~~las--~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~--~d~~i~iwd~~ 232 (304)
.|.+++|+|++ ..+++ |+.|++| ++||+++++....+..+. .+.++.|+|+++.+++++ .|+.|+|||..
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I--~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHI--RIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEE--EEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEE--EEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 99999999965 45554 4578885 699999998877776554 468899999999988865 78999999999
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+++++.++.+|.++|++|+|+|||++|+|||.|++||+|+..+.
T Consensus 353 ~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 353 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999999999999999999999999999999999987543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=288.00 Aligned_cols=241 Identities=22% Similarity=0.276 Sum_probs=200.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee---eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV---NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK- 103 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~---~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~- 103 (304)
.|.+++|+|+|++||+|+.|++|+|||+.++... ....+|...|.+++|+|++++|++|+.|+++ ++||+....
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v--~iw~~~~~~~ 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT--CIWKKNQDDF 95 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE--EEEEECCC-E
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE--EEEEccCCCe
Confidence 5899999999999999999999999999876532 2236899999999999999999999999996 689987654
Q ss_pred -eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc---cceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 104 -EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
.+..++.+ ...+.+++|+|++++|++|+.|+.|++||+.+.. .+..+.+|...|.+++|+|++++|++++.|++
T Consensus 96 ~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~ 173 (345)
T 3fm0_A 96 ECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173 (345)
T ss_dssp EEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC
T ss_pred EEEEEccCC--CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc
Confidence 33344433 3357899999999999999999999999987643 34567899999999999999999999999999
Q ss_pred eEEEEeeecCCceE--EEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC---------------ceeeEEeec
Q psy4754 180 LRCRLFDLRADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK---------------CCRVNHLMG 242 (304)
Q Consensus 180 i~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~---------------~~~~~~~~~ 242 (304)
+ ++||.++.+.. ..+..+. ..+.+++|+|+|++|++|+.|++|++||... ...+..+.+
T Consensus 174 i--~~w~~~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T 3fm0_A 174 V--KLYREEEDDWVCCATLEGHE--STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249 (345)
T ss_dssp E--EEEEEETTEEEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred E--EEEEecCCCEEEEEEecCCC--CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence 6 68999876543 3444333 4689999999999999999999999998522 123445555
Q ss_pred -cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 243 -HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 243 -h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
|...|++++|+|++..|++++.|+.|++|+....
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 8899999999999999999999999999987543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=282.76 Aligned_cols=269 Identities=23% Similarity=0.313 Sum_probs=226.4
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..|...|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.|+++ ++||+.+.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i--~vwd~~~~ 97 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--KIWDVSSG 97 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTC
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE--EEEECCCC
Confidence 3455569999999999999999999999999999998888899999999999999999999999999995 78999988
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
+.+..++.+.. .+.++.|+|+++++++|+.|+.|++||+++.+.+..+..|..+|.+++|+|+++.+++++.|+.+
T Consensus 98 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-- 173 (312)
T 4ery_A 98 KCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-- 173 (312)
T ss_dssp CEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE--
T ss_pred cEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE--
Confidence 88777765432 46789999999999999999999999999988888899999999999999999999999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEE--EE-ccCCCEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL--QV-SPDGTAF 259 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l--~~-sp~g~~l 259 (304)
++||+++.+.+..+.... ...+..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+.++ .+ .+++.+|
T Consensus 174 ~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 689999888766653322 2356889999999999999999999999999999999999887654332 33 4678999
Q ss_pred EEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCc
Q psy4754 260 SSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGR 302 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (304)
++|+.|+.|++|+...+.....++ .+.. -..+++.|+++
T Consensus 253 ~sg~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKEIVQKLQ----GHTDVVISTACHPTEN 292 (312)
T ss_dssp EECCTTSCEEEEETTTCCEEEEEC----CCSSCEEEEEECSSSS
T ss_pred EEECCCCEEEEEECCCchhhhhhh----ccCCcEEEEeecCcCC
Confidence 999999999999987654333222 2222 34566666654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=287.88 Aligned_cols=269 Identities=20% Similarity=0.254 Sum_probs=224.0
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...|.+++|+|++++|+||+.||+|++||..+++....+..|..+|.+++|+|++++|++|+.|+.+ ++|++....
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i--~v~~~~~~~ 139 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC--SVYPLTFDK 139 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE--EEEECCCCT
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE--EEEEEeccc
Confidence 344559999999999999999999999999999998888888999999999999999999999999996 678875321
Q ss_pred ------eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC--CCcEEEEee
Q psy4754 104 ------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGS 175 (304)
Q Consensus 104 ------~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s 175 (304)
....+..+ ...+.++.|+|++..+++++.|++|++||+.+++.+..+.+|...|.+++|+| +++.|++|+
T Consensus 140 ~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 140 NENMAAKKKSVAMH--TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp TCCSGGGCEEEEEC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred cccccccceeeecc--CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 11222222 12467899999999999999999999999999988889999999999999987 568999999
Q ss_pred cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc--ccceEEEEEc
Q psy4754 176 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH--ENRVSCLQVS 253 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h--~~~i~~l~~s 253 (304)
.|+++ ++||+++++.+..+..+. ..+++++|+|++++|++|+.|++|++||+.+...+..+..+ ...+.+++|+
T Consensus 218 ~Dg~v--~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 218 CDKKA--MVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp TTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred CCCeE--EEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 99996 699999998887776554 46799999999999999999999999999988777666543 3578999999
Q ss_pred cCCCEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 254 PDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 254 p~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
|+|.+|++|+.|++|++|+...+..... ...+... ..+.|+|+|+.|
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~----l~~h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSI----LFGHENRVSTLRVSPDGTAF 341 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEE----ECCCSSCEEEEEECTTSSCE
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEE----EECCCCcEEEEEECCCCCEE
Confidence 9999999999999999999866543222 2233333 467888888653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=281.64 Aligned_cols=243 Identities=16% Similarity=0.153 Sum_probs=199.4
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeeeecCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--CCRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|.+++|+|+|++||+|+.|++|+|||+.+ .+.+..+.+|.++|.+++|+++ +++|+||+.|+++ ++||+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v--~iWd~ 84 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV--MIWKE 84 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE--EEEEB
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE--EEEEc
Confidence 4455699999999999999999999999999864 4667889999999999999864 8999999999995 78999
Q ss_pred CCCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc--cceeccCcccceeEEEEcCC------
Q psy4754 100 RADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPD------ 167 (304)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~------ 167 (304)
..++ .+..+..+ ...+.+++|+|+ +.++++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 85 ENGRWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp SSSCBCCCEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCCceEEEEEeecC--CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 8653 33333322 235789999997 8899999999999999987653 23456789999999999997
Q ss_pred -------CcEEEEeecCCceEEEEeeecCCc----eEEEeecCceeeeeeEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q psy4754 168 -------GTAFSSGSWDTTLRCRLFDLRADK----EVACYKKDSILFGATSVDFSVSG---RLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 168 -------~~~las~s~d~~i~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~~g---~~l~sg~~d~~i~iwd~~~ 233 (304)
++.|++|+.|++| ++||+++.+ ....+..+. ..+.+++|+|++ ++|++|+.|++|++||+.+
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v--~lwd~~~~~~~~~~~~~l~~H~--~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLV--KIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -------CCEEEEEETTSCE--EEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cCCCCCCcceEEEEcCCCcE--EEEEEcCCCceEEEEEEecCCC--CceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5689999999996 689998765 333444443 468999999995 8999999999999999865
Q ss_pred ce---eeEEe--eccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 234 CC---RVNHL--MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 234 ~~---~~~~~--~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.. ....+ .+|...|.+++|+|+|++||+++.|++|++|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 32 11223 4688999999999999999999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=310.61 Aligned_cols=265 Identities=24% Similarity=0.298 Sum_probs=220.3
Q ss_pred CCceeEEeeccccceE---eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~---~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++||+||+.++... .......|...|.+++|+|++++|++|+.||+|++||+.++..++.+.+|...|.+++|+|
T Consensus 403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 482 (694)
T 3dm0_A 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482 (694)
T ss_dssp TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC
Confidence 4789999999875321 1122234555699999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEec-cceeeceeeeEEcCCC--CEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVDFSVSG--RLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-~~~~~~~~~~~~s~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
++++|+||+.|++| ++||............ ..+...+.++.|+|++ ..+++++.|+.|++||+.+.+....+.+|
T Consensus 483 ~~~~l~s~s~D~~i--~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h 560 (694)
T 3dm0_A 483 DNRQIVSASRDRTI--KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH 560 (694)
T ss_dssp TSSCEEEEETTSCE--EEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred CCCEEEEEeCCCEE--EEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 99999999999996 7899865543332211 1222347889999986 58999999999999999988888889999
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
...|.+++|+|+++++++|+.|++| ++||+++++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.++.
T Consensus 561 ~~~v~~v~~spdg~~l~sg~~Dg~i--~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 561 TGYVSTVAVSPDGSLCASGGKDGVV--LLWDLAEGKKLYSLEANS---VIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSBC--EEEETTTTEEEECCBCSS---CEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeE--EEEECCCCceEEEecCCC---cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 9999999999999999999999996 689999988776665443 478999999999988876 5679999999988
Q ss_pred eeEEeeccc-------------------cceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 236 RVNHLMGHE-------------------NRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 236 ~~~~~~~h~-------------------~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.+..+..|. -.+++++|+|+|++|+||+.|++||+|+..
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 877665432 237899999999999999999999999863
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=299.37 Aligned_cols=282 Identities=24% Similarity=0.385 Sum_probs=231.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||.+.. .+..+. .+...|.+++|+|+++++++++.||+|++||... ..+..+.+|...|.+++|+|+++
T Consensus 282 ~d~~i~~w~~~~~-~~~~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 282 DDKTVKLWNRNGQ-LLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp TTSCEEEEETTSC-EEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCc-EEEEEe--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCC
Confidence 4678999997654 333332 3445699999999999999999999999999865 45667889999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+++ ++||.. .+.+..+..+. ..+.+++|+|+++++++++.|+.|++||. +.+.+..+.+|...|.+
T Consensus 358 ~l~~~~~dg~v--~~~~~~-~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 358 TIASASDDKTV--KLWNRN-GQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 431 (577)
T ss_dssp EEEEEETTSEE--EEEETT-CCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEE
T ss_pred EEEEEeCCCEE--EEEcCC-CCEEEEecCCC--CCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEE
Confidence 99999999995 689954 45555555433 35788999999999999999999999995 45667788999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++|+||++.+++++.|+++ ++||.. .+.+..+..+. ..+.+++|+|++++|++++.|++|++||. +++.+..+.
T Consensus 432 ~~~s~d~~~l~~~~~d~~v--~~w~~~-~~~~~~~~~~~--~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTV--KLWNRN-GQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp EEECTTSSEEEEEETTSEE--EEEETT-SCEEEEEECCS--SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred EEECCCCCEEEEEcCCCEE--EEEECC-CCEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 9999999999999999996 689964 45555555543 35789999999999999999999999995 677888999
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
+|...|++|+|+|+|++||+++.|++|++|+...+..+ ....+..+ -.+.|+|+++.|
T Consensus 506 ~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~-----~~~~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEE-----EEECCSSCEEEEEECTTSSCE
T ss_pred CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEE-----EEcCCCCCEEEEEEcCCCCEE
Confidence 99999999999999999999999999999996433221 22334444 358899988754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=288.17 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=221.2
Q ss_pred CCceeEEeeccccceEeeeeccc---cccceeEEEEcCC----CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDS---ILFGATSVDFSVS----GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~---~~~~i~~~~~~~~----g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 74 (304)
++++|++||+.+++.+..+.... +...|++++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|..+|.++
T Consensus 42 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 42 GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 46789999999887765554322 3455999999999 6799999999999999999999999999999999999
Q ss_pred EECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEec-cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 75 QVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 75 ~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
+|+| ++++|++|+.|++| ++||+...+.+..+.. ......+.++.|+|+++++++++.|+.|++||+.+.+....+
T Consensus 122 ~~~~~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKDHAL--RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp EECSSCTTEEEEEETTSCE--EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred EECCCCCCEEEEEeCCCeE--EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 9999 89999999999995 7899998888777631 112335789999999999999999999999999876655443
Q ss_pred cC----------------------------cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce------------
Q psy4754 153 MG----------------------------HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE------------ 192 (304)
Q Consensus 153 ~~----------------------------h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~------------ 192 (304)
.. |...|.+++|+ ++.+++++.|+.+ ++||+++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i--~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI--VCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE--EEEEESSTTCCGGGCCTTCCCE
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE--EEEeCCCccccccccccCCcch
Confidence 33 99999999998 6699999999996 6899887643
Q ss_pred --EEEeecCceeeeeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCce----eeEEeecc--ccceEEEEEccCCCEEEEe
Q psy4754 193 --VACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC----RVNHLMGH--ENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 193 --~~~~~~~~~~~~~~~~~~s~~--g~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h--~~~i~~l~~sp~g~~lasg 262 (304)
+..+..+. ..+.+++|+|+ +++|++|+.|+.|++||+.+++ ....+.+| ...|++++|+|++++|+++
T Consensus 276 ~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 353 (366)
T 3k26_A 276 TILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAV 353 (366)
T ss_dssp EEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred heeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEE
Confidence 34443333 34678899999 9999999999999999998765 34467777 7999999999999999999
Q ss_pred ecCCeeeecccc
Q psy4754 263 SWDTTLRDEESK 274 (304)
Q Consensus 263 s~D~~i~~~~~~ 274 (304)
+.|+.|++|++.
T Consensus 354 ~~dg~i~iwd~~ 365 (366)
T 3k26_A 354 CDDASIWRWDRL 365 (366)
T ss_dssp ETTSEEEEEEC-
T ss_pred eCCCEEEEEEec
Confidence 999999999874
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=295.61 Aligned_cols=270 Identities=14% Similarity=0.233 Sum_probs=224.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC----ceeeeeecCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~l~~s~ 78 (304)
|++|++||+.+++.........+...|++++|+|++.+|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence 6789999999886321122223445599999999999999999999999999987 357778889999999999999
Q ss_pred C-CCeEEEEeCCCceEEEEeeeCCCe------eEeEE-eccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccc
Q psy4754 79 D-GTAFSSGSWDTTLRCRLFDLRADK------EVACY-KKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 79 d-~~~l~sgs~D~~i~~~~wd~~~~~------~~~~~-~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
+ +++|++++.|++| ++||+...+ ..... ........+.++.|+|+ +.++++++.|+.|++||+.+.+.+
T Consensus 124 ~~~~~l~s~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 124 KQDNVLASGGNNGEI--FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp SSTTBEEEECSSSCE--EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred CCCCEEEEEcCCCeE--EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 8 8999999999995 789998765 22221 11112235678999999 789999999999999999988877
Q ss_pred eeccCc------ccceeEEEEcCCC-cEEEEeecCC---ceEEEEeeecCC-ceEEEee-cCceeeeeeEEEEcC-CCCE
Q psy4754 150 NHLMGH------ENRVSCLQVSPDG-TAFSSGSWDT---TLRCRLFDLRAD-KEVACYK-KDSILFGATSVDFSV-SGRL 216 (304)
Q Consensus 150 ~~~~~h------~~~v~~v~~sp~~-~~las~s~d~---~i~i~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~s~-~g~~ 216 (304)
..+..| ...|.+++|+|++ ..+++++.|+ .+ ++||+++. +.+..+. .+. ..+.+++|+| ++++
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i--~~~d~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI--LIWDLRNANTPLQTLNQGHQ--KGILSLDWCHQDEHL 277 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC--CEEETTSTTSCSBCCCSCCS--SCEEEEEECSSCSSC
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE--EEEeCCCCCCCcEEeecCcc--CceeEEEeCCCCCCe
Confidence 777665 7899999999997 6899999998 86 68999886 3444444 332 4679999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccch
Q psy4754 217 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~ 278 (304)
|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++|++.....
T Consensus 278 l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 9999999999999999999999999999999999999999 8999999999999999876553
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=279.74 Aligned_cols=272 Identities=20% Similarity=0.264 Sum_probs=232.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++.+..+. .+...|.+++|+|++++|++++.||+|++||+.+++.+..+. |..+|.+++|+|+++
T Consensus 52 ~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 52 KDSSASVWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN 128 (369)
T ss_dssp SSSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC
Confidence 37889999999998876654 344569999999999999999999999999999998888777 889999999999999
Q ss_pred eEEEEeCC-----CceEEEEeeeCCCeeEe-----------EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 82 AFSSGSWD-----TTLRCRLFDLRADKEVA-----------CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 82 ~l~sgs~D-----~~i~~~~wd~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
+|++++.+ +.+ .+||+....... .+..+.....+.++.|+|+++++++++.|+.|++||+.+
T Consensus 129 ~l~~~~~~~~~~~g~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 129 YFLAILDNVMKNPGSI--NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEEEECCBTTBCCEE--EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEEEecCCccCCCCEE--EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 99999988 885 689986543211 111111111567899999999999999999999999988
Q ss_pred -cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC
Q psy4754 146 -CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 224 (304)
Q Consensus 146 -~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~ 224 (304)
...+..+..|...|.+++|+|+++.|++++.|+.+ ++||+++.+.+..+... ..+..++|+|+++++++++.++
T Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS--FLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC
T ss_pred CcEeEEEEecCCCceeEEEECCCCCEEEEecCCceE--EEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCC
Confidence 67777888999999999999999999999999986 68999998887777633 3568999999999999999888
Q ss_pred --------------cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 225 --------------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 225 --------------~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
.+++||..+++.+..+.+|...|.+++|+|++++|++++.|++|++|++..++..+...
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence 89999999999999999999999999999999999999999999999998876544433
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=277.20 Aligned_cols=242 Identities=21% Similarity=0.241 Sum_probs=195.2
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeee-cC-CcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHL-MG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~-~~-h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|.+++|+|+ +||+|+.|++|++||+..+ +....+ .+ |..+|.+++|+|++++|++|+.|+++ ++||+
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v--~iw~~ 87 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV--SIWAK 87 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE--EEEEC
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE--EEEEc
Confidence 34456999999987 9999999999999999764 344555 44 99999999999999999999999996 78998
Q ss_pred CCC-------eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc----ccceeccCcccceeEEEEcCCC
Q psy4754 100 RAD-------KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 100 ~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~sp~~ 168 (304)
... +.+..++.+ ...+.+++|+|++++|++|+.|++|++||+... +.+..+.+|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGH--ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp -------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred ccCcCccccceeEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 532 233333333 235789999999999999999999999998432 3456778999999999999999
Q ss_pred cEEEEeecCCceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCc--------ee
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKC--------CR 236 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~--g~~l~sg~~d~~i~iwd~~~~--------~~ 236 (304)
+.|++++.|+++ ++||.... +.+..+..+. ..+.+++|+|+ +.+|++|+.|++|++||+..+ ..
T Consensus 166 ~~l~s~s~D~~i--~iW~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 166 ALLASSSYDDTV--RIWKDYDDDWECVAVLNGHE--GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp SEEEEEETTSCE--EEEEEETTEEEEEEEECCCS--SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CEEEEEcCCCeE--EEEECCCCCeeEEEEccCCC--CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 999999999996 68998765 4455555443 46789999999 779999999999999997654 34
Q ss_pred eEEeec-cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 237 VNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 237 ~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+..+.+ |..+|.+++|+|++ .|++++.|++|++|+...+
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 455555 99999999999765 8999999999999987654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=272.84 Aligned_cols=262 Identities=23% Similarity=0.329 Sum_probs=217.8
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|++|||||+.+++++..+..+.+...|++++|+|++++|++|+.||+|++||+.+++.++.+.+|...+.++++ +++.
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~ 121 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 121 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCE
Confidence 78999999999999888877776667999999999999999999999999999999999999999999887665 4679
Q ss_pred EEEEeCCCceEEEEeeeCCCe-eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc----ceeccCccc
Q psy4754 83 FSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR----VNHLMGHEN 157 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~ 157 (304)
|++|+.++.+ ++|+..... .+..+..+. ..+..+.++++++++++++.|+.|++||+.+++. ......|..
T Consensus 122 l~s~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 122 LSSGSRSGHI--HHHDVRVAEHHVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp EEEEETTSEE--EEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred EEEEecCCce--EeeecCCCceeEEEEcCcc--CceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 9999999985 567766543 333333322 2456788999999999999999999999887553 334567888
Q ss_pred ceeEEEEcCCCc-E--EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe--CCCcEEEEeCC
Q psy4754 158 RVSCLQVSPDGT-A--FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY--NDYTINVWDSL 232 (304)
Q Consensus 158 ~v~~v~~sp~~~-~--las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~--~d~~i~iwd~~ 232 (304)
.|.+++++|++. . +++++.++++ ++||.+........... ..+..+.|+|+++.+++++ .|+.|++||+.
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i--~lwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHI--RIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEE--EEEETTTCCEEEEEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEE--EEEecccccccccccce---eeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence 999999999765 3 3466677775 69999887765554433 3467889999999888755 78999999999
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+++++.++.+|.++|++|+|+|||++|||||.|++||+|+..+
T Consensus 273 ~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 273 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999999999999999999999999999999999998743
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=284.56 Aligned_cols=264 Identities=19% Similarity=0.313 Sum_probs=225.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+... +...|++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| +++
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~ 187 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRH 187 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETT
T ss_pred CCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCC
Confidence 4789999999999877655543 4455999999999999999999999999999999999999999999999999 467
Q ss_pred eEEEEeCCCceEEEEeeeCC-CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
.|++|+.|+.+ ++||+.. ......+..+. ..+.++.|+|++.++++|+.|+.|++||+.+...+..+.+|...|.
T Consensus 188 ~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 263 (401)
T 4aez_A 188 VLSSGSRSGAI--HHHDVRIANHQIGTLQGHS--SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263 (401)
T ss_dssp EEEEEETTSEE--EEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC
T ss_pred EEEEEcCCCCE--EEEecccCcceeeEEcCCC--CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEE
Confidence 99999999995 7899984 44455554433 3578899999999999999999999999998888888889999999
Q ss_pred EEEEcCCC-cEEEEee--cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCce
Q psy4754 161 CLQVSPDG-TAFSSGS--WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG--YNDYTINVWDSLKCC 235 (304)
Q Consensus 161 ~v~~sp~~-~~las~s--~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg--~~d~~i~iwd~~~~~ 235 (304)
+++|+|++ ..+++++ .|+.+ ++||+++++.+..+.... .+.+++|+|++++++++ +.|+.|++||+.++.
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i--~i~d~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQI--HFWNAATGARVNTVDAGS---QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEE--EEEETTTCCEEEEEECSS---CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred EEEECCCCCCEEEEecCCCCCEE--EEEECCCCCEEEEEeCCC---cEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 99999976 5677765 68885 699999988877775443 57899999999999994 489999999998854
Q ss_pred e--eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 236 R--VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 236 ~--~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
. ...+.+|...|.+++|+|+|.+|++++.|++|++|+...+.
T Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 4 44477899999999999999999999999999999987654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=275.61 Aligned_cols=270 Identities=21% Similarity=0.325 Sum_probs=210.0
Q ss_pred ccccceeEEEE-----cC-CCCEEEEeeCCCcEEEEeCCC-------ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC
Q psy4754 24 SILFGATSVDF-----SV-SGRLLFAGYNDYTINVWDSLK-------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90 (304)
Q Consensus 24 ~~~~~i~~~~~-----~~-~g~~l~tg~~dg~v~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~ 90 (304)
.|...|++++| ++ ++++|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++++|+||+.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 34555999999 76 899999999999999999864 345667889999999999999999999999999
Q ss_pred ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce--eccCcccceeEEEEcCCC
Q psy4754 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 91 ~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~ 168 (304)
++ ++||+.+++.+..+..+. ..+.+++|+|+++++++++.|+.|++||+....... ...+|...|.+++|+|++
T Consensus 99 ~v--~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (343)
T 2xzm_R 99 TL--RLWDLRTGTTYKRFVGHQ--SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM 174 (343)
T ss_dssp EE--EEEETTSSCEEEEEECCC--SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred cE--EEEECCCCcEEEEEcCCC--CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence 95 789999988877776543 357899999999999999999999999987433221 234799999999999987
Q ss_pred ----------cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceee
Q psy4754 169 ----------TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRV 237 (304)
Q Consensus 169 ----------~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~ 237 (304)
..+++++.|+++ ++||. ..+....+..+. ..+.+++|+|+|++|++|+.|++|++||+.+ ....
T Consensus 175 ~~~~~~~~~~~~l~s~~~d~~i--~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 175 KSANKVQPFAPYFASVGWDGRL--KVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CSCSCCCSSCCEEEEEETTSEE--EEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred ccccccCCCCCEEEEEcCCCEE--EEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 789999999996 68994 344455555443 4679999999999999999999999999843 3333
Q ss_pred EEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhh--eeecc-------ccCCcee-EEEEEecCCccC
Q psy4754 238 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQY--LLRSR-------ITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~--~~~~~-------~~~~~~~-~~~~~~~~~~~~ 304 (304)
..+ .+...|.+++|+|++.++++| .|+.|++|+...+.... .++.. ...+... ..++++|+|+.|
T Consensus 250 ~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 250 REF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp EEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred eee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 333 356679999999999887655 68899999986544322 11110 0012222 468899988753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=286.60 Aligned_cols=268 Identities=15% Similarity=0.119 Sum_probs=225.8
Q ss_pred CCceeEEeeccccc------eEeeeeccccccceeEEEEcCC----C---CEEEEeeCCCcEEEEeCCCcee-----eee
Q psy4754 2 GKNHCRLFDLRADK------EVACYKKDSILFGATSVDFSVS----G---RLLFAGYNDYTINVWDSLKCCR-----VNH 63 (304)
Q Consensus 2 ~~~~v~~wd~~~~~------~~~~~~~~~~~~~i~~~~~~~~----g---~~l~tg~~dg~v~iwd~~~~~~-----~~~ 63 (304)
.|++|++||+.+++ ....+. .+...|++++|+|+ + .+|++++.||.|++||+.+++. +..
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 47899999999987 444333 34456999999999 9 9999999999999999988776 778
Q ss_pred ecCC-----cCcEEEEEEC----CCCCe-EEEEeCCCceEEEEeeeCC------CeeEe-----EEec-----cceeece
Q psy4754 64 LMGH-----ENRVSCLQVS----PDGTA-FSSGSWDTTLRCRLFDLRA------DKEVA-----CYKK-----DSILFGA 117 (304)
Q Consensus 64 ~~~h-----~~~V~~l~~s----~d~~~-l~sgs~D~~i~~~~wd~~~------~~~~~-----~~~~-----~~~~~~~ 117 (304)
+..| ...|.+++|+ |++++ |++++.|+.+ ++||+.. .+.+. .+.. ......+
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT--YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE--EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE--EEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence 8888 5999999999 99999 9999999995 7899987 44444 4422 1122346
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC---c---ccceeEEEEcCCCcEEEEeecC---CceEEEEeeec
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---H---ENRVSCLQVSPDGTAFSSGSWD---TTLRCRLFDLR 188 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h---~~~v~~v~~sp~~~~las~s~d---~~i~i~~~d~~ 188 (304)
.+++|+|++ ++++++.|+.|++||+++.+.+..+.. | ...|.+++|+|++++|++++.| +.+ ++||++
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i--~i~d~~ 266 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI--TLYETE 266 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE--EEEETT
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceE--EEEECC
Confidence 889999999 999999999999999998888888888 9 9999999999999999999999 875 699999
Q ss_pred CCceEEEeecCc-----------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee------cc--------
Q psy4754 189 ADKEVACYKKDS-----------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM------GH-------- 243 (304)
Q Consensus 189 ~~~~~~~~~~~~-----------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~------~h-------- 243 (304)
+.+.+..+.... ....+.+++|+|++++|++++.|+.|++||+.+++.+..+. +|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 988877776510 12467899999999999999999999999999999999999 88
Q ss_pred -------ccceEEEEEccCC----------CEEEEeecCCeeeecccccc
Q psy4754 244 -------ENRVSCLQVSPDG----------TAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 244 -------~~~i~~l~~sp~g----------~~lasgs~D~~i~~~~~~~~ 276 (304)
..+|.+++|+|++ .+|++|+.|+.|++|+.+.+
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999997653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=283.51 Aligned_cols=243 Identities=16% Similarity=0.118 Sum_probs=198.2
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECC--CCCeEEEEeCCCceEEEEeeeC
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
|...|++++|+|+|++||+|+.|++|++||+.++. .+..+.+|.++|.+++|++ ++++|+||+.|+++ ++||+.
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v--~iWd~~ 89 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV--IIWREE 89 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE--EEECCS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE--EEEECC
Confidence 44559999999999999999999999999998764 4677899999999999986 48999999999995 789998
Q ss_pred CCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc---cceeccCcccceeEEEEcCC------
Q psy4754 101 ADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPD------ 167 (304)
Q Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~v~~sp~------ 167 (304)
+++ ....+..+ ...+.+++|+|+ +.++++|+.|+.|++||+.+.. ....+.+|...|.+++|+|+
T Consensus 90 ~~~~~~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 90 NGTWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp SSCCCEEEEECCC--SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCcceEEEEccCC--CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 753 33333332 235789999998 7899999999999999987642 23456789999999999997
Q ss_pred -----------CcEEEEeecCCceEEEEeeecCC---ceEEEeecCceeeeeeEEEEcCCC----CEEEEEeCCCcEEEE
Q psy4754 168 -----------GTAFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSG----RLLFAGYNDYTINVW 229 (304)
Q Consensus 168 -----------~~~las~s~d~~i~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~~g----~~l~sg~~d~~i~iw 229 (304)
++.|++|+.|++| ++||++.. +.+..+..+. ..+.+++|+|++ ++|++|+.|++|++|
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v--~lWd~~~~~~~~~~~~l~~h~--~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLI--KLWKEEEDGQWKEEQKLEAHS--DWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBC--CEEEECTTSCEEEEECCBCCS--SCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccCccccceEEEecCCCeE--EEEEeCCCCccceeeecccCC--CceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 4689999999996 68999754 2344444443 468999999997 899999999999999
Q ss_pred eCCCc---e-eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 230 DSLKC---C-RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 230 d~~~~---~-~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
++.+. . ....+.+|.+.|++++|+|++.+||+|+.|++|++|+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 98652 1 2234567899999999999999999999999999998653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=282.23 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=224.7
Q ss_pred CCceeEEeec----cccc------eEeeeecccc--------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee
Q psy4754 2 GKNHCRLFDL----RADK------EVACYKKDSI--------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63 (304)
Q Consensus 2 ~~~~v~~wd~----~~~~------~~~~~~~~~~--------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~ 63 (304)
.|++|++||+ .+++ ....+..... ...|++++|+|++++|++|+.||.|++|| .+++.+..
T Consensus 66 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~ 144 (425)
T 1r5m_A 66 KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNV 144 (425)
T ss_dssp TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEE
T ss_pred CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeee
Confidence 4689999999 8887 4444444322 33699999999999999999999999999 56778888
Q ss_pred ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-------------------------------
Q psy4754 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS------------------------------- 112 (304)
Q Consensus 64 ~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~------------------------------- 112 (304)
+.+|..+|.+++|+|++++|++++.|+.+ ++||+.+.+.+..+....
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (425)
T 1r5m_A 145 LNFHRAPIVSVKWNKDGTHIISMDVENVT--ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI 222 (425)
T ss_dssp ECCCCSCEEEEEECTTSSEEEEEETTCCE--EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEE
T ss_pred ccCCCccEEEEEECCCCCEEEEEecCCeE--EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEE
Confidence 89999999999999999999999999995 689998766554432111
Q ss_pred -----------------------eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc
Q psy4754 113 -----------------------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 169 (304)
Q Consensus 113 -----------------------~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 169 (304)
....+.++.|+|+++++++++.|+.|++||+.+.+.+..+.+|...|.+++|+|++
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 301 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD- 301 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence 01235688999999999999999999999999888888888999999999999999
Q ss_pred EEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce--------------
Q psy4754 170 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-------------- 235 (304)
Q Consensus 170 ~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~-------------- 235 (304)
.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++++|++++.|+.|++||+.++.
T Consensus 302 ~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 377 (425)
T 1r5m_A 302 KVISCSMDGSV--RLWSLKQNTLLALSIVDG--VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377 (425)
T ss_dssp EEEEEETTSEE--EEEETTTTEEEEEEECTT--CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------
T ss_pred EEEEEeCCCcE--EEEECCCCcEeEecccCC--ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccccc
Confidence 99999999986 699999988877776544 357899999999999999999999999998887
Q ss_pred ------eeEEeecccc--ceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 236 ------RVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 236 ------~~~~~~~h~~--~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.+..+.+|.. .|.+++|+|++++|++++.|+.|++|+++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 378 NPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8888999977 99999999999999999999999999874
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=282.74 Aligned_cols=268 Identities=23% Similarity=0.301 Sum_probs=213.7
Q ss_pred eEEeeccccceEee--eeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC--------------
Q psy4754 6 CRLFDLRADKEVAC--YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-------------- 69 (304)
Q Consensus 6 v~~wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~-------------- 69 (304)
..+|+....+.... .....|...|.+++|+|+|++||+|+ ++++++|++.+++.+..+..|..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (393)
T 1erj_A 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120 (393)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------
T ss_pred EEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccC
Confidence 44666655433211 11112444599999999999999986 78999999999888777765532
Q ss_pred ----cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 70 ----RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 70 ----~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
.|.+++|+|++++|++|+.|++| ++||+.+.+.+..+..+. ..+.+++|+|+++++++++.|+.|++||+++
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLI--RIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeE--EEEECCCCcEEEEEccCC--CCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 49999999999999999999995 789999888877766543 3578999999999999999999999999988
Q ss_pred cccceeccCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeec-----CceeeeeeEEEEcCCCCEEEE
Q psy4754 146 CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 146 ~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~s 219 (304)
++....+. +...+.+++|+| +++.+++|+.|+++ ++||+++++.+..+.. ..+...+.+++|+|+|++|++
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v--~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV--RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE--EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE--EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 77665544 567899999999 89999999999996 6999998876655521 112245789999999999999
Q ss_pred EeCCCcEEEEeCCCc------------eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 220 GYNDYTINVWDSLKC------------CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 220 g~~d~~i~iwd~~~~------------~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
|+.|++|++||+.+. .....+.+|...|.+++|+|++.+|++|+.|++|++|+...+.....
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 999999999998652 34567889999999999999999999999999999999877654433
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=271.86 Aligned_cols=267 Identities=22% Similarity=0.287 Sum_probs=220.8
Q ss_pred CCceeEEeeccccceE---eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~---~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|||||+.+++.. +......+...|.+++|+|+|++|++|+.|+.|++|+............+...+..+.+++
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee
Confidence 4789999999886532 2222234455699999999999999999999999999999888888888899999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
++++|++|+.|+.+ ++||+........ ........+..+.|+++ ..++++++.|+.|++||+.+.+.+..+.+|.
T Consensus 139 ~~~~l~s~s~d~~~--~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~ 215 (340)
T 4aow_A 139 DNRQIVSGSRDKTI--KLWNTLGVCKYTV-QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215 (340)
T ss_dssp TSSCEEEEETTSCE--EEECTTSCEEEEE-CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred cCccceeecCCCeE--EEEEeCCCceEEE-EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence 99999999999995 6899876554332 22222234567778765 4578899999999999999988888899999
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
.+|.+++|+|++++|++|+.|+++ ++||+++.+.+..+..+. .+.++.|+|++.++++ +.|+.|++||+.++..
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i--~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~-~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQA--MLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLCA-ATGPSIKIWDLEGKII 289 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEE--EEEETTTTEEEEEEECSS---CEEEEEECSSSSEEEE-EETTEEEEEETTTTEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeE--EEEEeccCceeeeecCCc---eEEeeecCCCCceeec-cCCCEEEEEECCCCeE
Confidence 999999999999999999999996 689999988887776554 4688999999876654 5689999999988766
Q ss_pred eEEee---------ccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 237 VNHLM---------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 237 ~~~~~---------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+..+. +|...|++++|+|||++|+||+.|++|++|++..+.
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 65543 688999999999999999999999999999987654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=282.01 Aligned_cols=266 Identities=17% Similarity=0.234 Sum_probs=217.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCC---CCEEEEeeCCCcEEEEeCCCce-eeeeecCCcCcEEEEE--
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQ-- 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~---g~~l~tg~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~-- 75 (304)
+|++|++||+.+++....... .+...|++++|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.+++
T Consensus 42 ~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 42 GTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI 120 (357)
T ss_dssp CCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEE
T ss_pred CCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeec
Confidence 489999999999876543332 23456999999998 6999999999999999999887 7888899999999995
Q ss_pred ----ECCCCCeEEEEeCCCceEEEEeeeCCCe-eEeEEeccce--eeceeeeE----EcCCCCEEEEEeCCCeEEEecCC
Q psy4754 76 ----VSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDSI--LFGATSVD----FSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 76 ----~s~d~~~l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~--~~~~~~~~----~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
|+|++++|++++.|+++ ++||+.... .+..+..+.. ...+.++. |++++.++++++.|+.|++||++
T Consensus 121 ~~~~~s~~~~~l~~~~~d~~i--~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 121 GGLGIGEGAPEIVTGSRDGTV--KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp SGGGCC-CCCEEEEEETTSCE--EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT
T ss_pred cccccCCCccEEEEEeCCCeE--EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc
Confidence 57899999999999995 789998765 4555543221 12345565 78999999999999999999998
Q ss_pred ccccceeccCcccceeEEEEcC---CCcEEEEeecCCceEEEEeeecCCceEEEee-----cCceeeeeeEEEEcCCCC-
Q psy4754 145 KCCRVNHLMGHENRVSCLQVSP---DGTAFSSGSWDTTLRCRLFDLRADKEVACYK-----KDSILFGATSVDFSVSGR- 215 (304)
Q Consensus 145 ~~~~~~~~~~h~~~v~~v~~sp---~~~~las~s~d~~i~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~s~~g~- 215 (304)
+.+.. ....|...|.+++|+| +++.+++++.|+.+ ++||+++.+....+. .+ ...+.+++|+|+++
T Consensus 199 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 273 (357)
T 3i2n_A 199 NMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKF--HVFDMRTQHPTKGFASVSEKAH--KSTVWQVRHLPQNRE 273 (357)
T ss_dssp TTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEE--EEEEEEEEETTTEEEEEEEECC--SSCEEEEEEETTEEE
T ss_pred cCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeE--EEEeCcCCCcccceeeeccCCC--cCCEEEEEECCCCCc
Confidence 87654 3467889999999999 99999999999986 689988765433332 33 24679999999999
Q ss_pred EEEEEeCCCcEEEEeCCCc-------------------eeeEEeeccccceEEEEEccCCCEEE-EeecCCeeeeccccc
Q psy4754 216 LLFAGYNDYTINVWDSLKC-------------------CRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRDEESKN 275 (304)
Q Consensus 216 ~l~sg~~d~~i~iwd~~~~-------------------~~~~~~~~h~~~i~~l~~sp~g~~la-sgs~D~~i~~~~~~~ 275 (304)
+|++|+.|+.|++||+.++ ..+..+.+|.++|++++|+|++++|+ +++.|+.|++|+..+
T Consensus 274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 8999999999999997643 46777889999999999999999998 899999999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=268.68 Aligned_cols=261 Identities=18% Similarity=0.245 Sum_probs=221.3
Q ss_pred CCceeEEeeccccceE---eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~---~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
+|++|++||+.+++.. ..+....+...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|
T Consensus 70 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred CCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 4789999999987532 222222345569999999999999999999999999998876 56667889999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
+|++++|++++.|+.+ ++||+.+.+.+..++.+. ..+.++.|+|+++++++++.|+.|++||+.+.+.+..+ .|.
T Consensus 150 ~~~~~~l~~~~~dg~v--~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~ 224 (337)
T 1gxr_A 150 SPDSKVCFSCCSDGNI--AVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFT 224 (337)
T ss_dssp CTTSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECS
T ss_pred CCCCCEEEEEeCCCcE--EEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCC
Confidence 9999999999999995 789999888877766543 25678999999999999999999999999887766554 577
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
..+.+++|+|+++.+++++.|+.+ ++||+++.+... +..+ ...+.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i--~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNV--EVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCE--EEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CceEEEEECCCCCEEEEEcCCCcE--EEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 889999999999999999999986 689998876543 3222 24678999999999999999999999999998877
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+.. ..|...|.+++|+|++++|++++.|+.|++|++
T Consensus 300 ~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 300 IFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 744 458899999999999999999999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=298.08 Aligned_cols=266 Identities=11% Similarity=0.043 Sum_probs=206.3
Q ss_pred CCceeEEeeccccceEeeee--ccccccceeEEEEcCC------CCEEEEeeCCCcEEEEeCCCcee-----------ee
Q psy4754 2 GKNHCRLFDLRADKEVACYK--KDSILFGATSVDFSVS------GRLLFAGYNDYTINVWDSLKCCR-----------VN 62 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~--~~~~~~~i~~~~~~~~------g~~l~tg~~dg~v~iwd~~~~~~-----------~~ 62 (304)
.|++|||||+.++++..... ...+...|.+++|+|+ +.+||+|+.||+|++||+.++.. ..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 57899999999886532111 1122334999999996 57999999999999999976532 23
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-eEeEEeccceeeceeee--EEcCCC-CEEEEEeCCCeE
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSV--DFSVSG-RLLFAGYNDYTI 138 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~--~~s~~~-~~l~sg~~dg~i 138 (304)
.+.+|..+|++++|+++ ..|++|+.|++| ++||+.+.. +...+..+. ..+.++ .|++++ .+|++|+.|++|
T Consensus 261 ~l~~h~~~v~sv~~s~~-~~lasgs~DgtV--~lWD~~~~~~~~~~~~~H~--~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 261 TLSLADSLITTFDFLSP-TTVVCGFKNGFV--AEFDLTDPEVPSFYDQVHD--SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp EECCTTTCEEEEEESSS-SEEEEEETTSEE--EEEETTBCSSCSEEEECSS--SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred EEEcCCCCEEEEEecCC-CeEEEEeCCCEE--EEEECCCCCCceEEeeccc--ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 57789999999999986 489999999995 799998653 333344332 246677 578887 899999999999
Q ss_pred EEecCCccccceeccCccc--ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 139 NVWDSLKCCRVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
++||+++.+.+..+.+|.. .|.+++|+|+++.+++++.|+++ ++||++....+..+..+. ..|++++|+|+|++
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv--~lwd~~~~~~~~~l~gH~--~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSL--RAVPSRAAFAVHPLVSRE--TTITAIGVSRLHPM 411 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEE--EEEETTCTTCCEEEEECS--SCEEEEECCSSCCB
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcE--EEEECcccccceeeecCC--CceEEEEeCCCCCe
Confidence 9999998877777777754 58899999999999999999985 699999887766665543 46899999999999
Q ss_pred EEEEeCCCcEEEEeCCC--------------------------------------------ceeeEEeeccccceEEEEE
Q psy4754 217 LFAGYNDYTINVWDSLK--------------------------------------------CCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~--------------------------------------------~~~~~~~~~h~~~i~~l~~ 252 (304)
|++|+.|++|++||... +..+.++.+|..+|++|+|
T Consensus 412 l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vaf 491 (524)
T 2j04_B 412 VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKW 491 (524)
T ss_dssp CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEE
T ss_pred EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEEC
Confidence 99999999999987321 1223445678999999999
Q ss_pred ccCC---CEEEEeecCCeeeecccccc
Q psy4754 253 SPDG---TAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 253 sp~g---~~lasgs~D~~i~~~~~~~~ 276 (304)
+|++ ..+|+|+.|++||+|+++.+
T Consensus 492 sp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 492 NETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCCccHHHHhhccCceEEEEEcccc
Confidence 9995 49999999999999987644
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=280.79 Aligned_cols=266 Identities=15% Similarity=0.161 Sum_probs=200.1
Q ss_pred CceeEEeeccccce--------EeeeeccccccceeEEEEcCCCCEEEEe-----------eCCCcEEEEeCCCcee---
Q psy4754 3 KNHCRLFDLRADKE--------VACYKKDSILFGATSVDFSVSGRLLFAG-----------YNDYTINVWDSLKCCR--- 60 (304)
Q Consensus 3 ~~~v~~wd~~~~~~--------~~~~~~~~~~~~i~~~~~~~~g~~l~tg-----------~~dg~v~iwd~~~~~~--- 60 (304)
+++||+|++..+.. ........+...+.++++. +..+++| +.|+++|+|+..+...
T Consensus 42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 45799999987632 1112223333446777664 5556554 5678899999764321
Q ss_pred -ee-----eecCCcCcEEEEEECCCCCeEEE--EeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE
Q psy4754 61 -VN-----HLMGHENRVSCLQVSPDGTAFSS--GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 132 (304)
Q Consensus 61 -~~-----~~~~h~~~V~~l~~s~d~~~l~s--gs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 132 (304)
.. ....+...+++++|+|||++|++ ++.|++| ++||+.+.+++..++.+. .+.+++|+|++++++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i--~iwd~~~~~~~~~~~~~~---~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM--RIIDPSDLTEKFEIETRG---EVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE--EEEETTTTEEEEEEECSS---CCCEEEECTTSSEEEEE
T ss_pred EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE--EEeECCCCcEEEEeCCCC---ceEEEEEccCCceEEec
Confidence 11 12235567999999999998764 4578885 799999998887776433 46799999999999999
Q ss_pred eCCCeEEEecCCccccc--eeccCcccceeEEEEcCCCcEEEEeecCCc--eEEEEeeecCCceE----EEeecCceeee
Q psy4754 133 YNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPDGTAFSSGSWDTT--LRCRLFDLRADKEV----ACYKKDSILFG 204 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~las~s~d~~--i~i~~~d~~~~~~~----~~~~~~~~~~~ 204 (304)
+.++.+ +|+..++..+ ....+|...|.+++|+|+++.+++++.|+. +.+++|++...... ..+..+ ...
T Consensus 195 s~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~ 271 (365)
T 4h5i_A 195 TGSSLE-VISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR--FKG 271 (365)
T ss_dssp CSSCEE-EEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS--CSC
T ss_pred cceeEE-EEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC--CCC
Confidence 866554 5554544433 235678899999999999999999998874 34578888765432 122222 246
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe-eccccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+++++|+|+|++||+|+.|++|+|||+.+++++.++ .+|..+|++|+|||||++|||||.|++||+|+++..+.
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 899999999999999999999999999999999885 78999999999999999999999999999999977663
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=284.91 Aligned_cols=262 Identities=16% Similarity=0.210 Sum_probs=217.1
Q ss_pred CceeEEeeccccceEeeeeccccccc-eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFG-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~-i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
|++|++||+.+++....+. .+. +....|++++++|++|+.||.|++||+.+++....+.+|...|.+++|+|+++
T Consensus 77 d~~v~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 152 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLK----RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE 152 (420)
T ss_dssp TTEEEEEECCSEETTTTSC----SCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS
T ss_pred CCcEEEEEecccceeeEEe----cCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC
Confidence 6899999999876533222 234 45557899999999999999999999999988888889999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC---cccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h~~~ 158 (304)
+|++|+.|+++ ++||+.+.+.+..+..+. ..+.+++|+|+++++++++.|+.|++||+++.+.+..+.. |...
T Consensus 153 ~l~s~s~d~~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 153 ALISSSQDMQL--KIWSVKDGSNPRTLIGHR--ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG 228 (420)
T ss_dssp EEEEEETTSEE--EEEETTTCCCCEEEECCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC
T ss_pred EEEEEeCCCeE--EEEeCCCCcCceEEcCCC--CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC
Confidence 99999999995 789999888777776543 3578999999999999999999999999998887776654 3334
Q ss_pred ---------------------eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-E
Q psy4754 159 ---------------------VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-L 216 (304)
Q Consensus 159 ---------------------v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~ 216 (304)
+.+++|+|+++.+++++.|+.+ ++||+++.+....+... ....+.+++|+|+++ +
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 305 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI--TVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANY 305 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE--EEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTE
T ss_pred ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE--EEEECCCCceeEEcccc-cCCCceeEEEeCCCCCE
Confidence 4445568899999999999996 69999988876665432 124679999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCcee-eEEeec-cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCCR-VNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~-~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
|++|+.|+.|++||+.++.. +..+.+ |...|.++.+ |++.+|++++.|++|++|++..+
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 99999999999999988644 667776 6778888855 57899999999999999998663
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=268.86 Aligned_cols=264 Identities=22% Similarity=0.284 Sum_probs=217.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee---eec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN---HLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~---~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
+...|++++|+|++++|++++ ||.|++||+.+++... .+. +|...|.+++|+|++++|++++.|+.+ ++||+
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~~~d~ 126 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL--SIWDL 126 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE--EEEEC
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE--EEEEC
Confidence 445699999999999999998 9999999998765332 232 799999999999999999999999985 78999
Q ss_pred CCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC
Q psy4754 100 RADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 100 ~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d 177 (304)
...+. ...+..+ ...+.++.|+|+++++++++.|+.|++||+.+.+.+..+.+|...|.+++|+|+++.+++++.|
T Consensus 127 ~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 127 AAPTPRIKAELTSS--APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCC--EEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcceeeecccC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 87663 3333322 2346789999999999999999999999999988888889999999999999999999999999
Q ss_pred CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC
Q psy4754 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+.+ ++||+++.+.+..+... ..+.+++|+|+++++++++.++.|++||..+++. ..+..|..+|.+++|+|+++
T Consensus 205 g~i--~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 205 NTV--RSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp SEE--EEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSS
T ss_pred CcE--EEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCC
Confidence 996 68999988877666533 3578999999999999999999999999988764 46778999999999999999
Q ss_pred EEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 258 AFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+|++++.|+.|++|+...+....... .+..-..+.++|+++.
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 320 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKY 320 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEec----CCCcEEEEEECCCCCE
Confidence 99999999999999987655332211 1222355677777654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=280.39 Aligned_cols=262 Identities=16% Similarity=0.179 Sum_probs=212.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecC---CcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~s 77 (304)
.|++|++||+.+++....+....+...|.+++|+| ++.+|++|+.|++|++||+.+ ..+..+.. |...|.+++|+
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence 37899999999998877666555666799999999 679999999999999999986 44444443 45889999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCc----cccceec
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK----CCRVNHL 152 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~----~~~~~~~ 152 (304)
|++++|++|+.|+.+ ++||+. .+.+..+..+. ..+.+++|+|+++ ++++++.|+.|++||+++ ...+..+
T Consensus 173 ~~~~~l~~~~~d~~i--~i~d~~-~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 173 VSRQMLATGDSTGRL--LLLGLD-GHEIFKEKLHK--AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp TTTTEEEEEETTSEE--EEEETT-SCEEEEEECSS--SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred CCCCEEEEECCCCCE--EEEECC-CCEEEEeccCC--CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 999999999999995 789984 55666555443 3578999999999 999999999999999887 3344444
Q ss_pred cCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeecCce-----e----------eeeeEEEEcCCCCE
Q psy4754 153 MGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-----L----------FGATSVDFSVSGRL 216 (304)
Q Consensus 153 ~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-----~----------~~~~~~~~s~~g~~ 216 (304)
+|...|.+++|+| +++.|++++.|+.+ ++||+++.+....+..+.. . ..+..++|+|++++
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~ 324 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEI--RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL 324 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEE--EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcE--EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc
Confidence 7999999999999 99999999999996 6999988765444432210 0 12334666777766
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+|+.|+.|++||+.+++.+..+.+ |...+.+++|+|++.+|++|+ |+.|++|++++
T Consensus 325 --s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 --LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp --CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred --ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 777899999999999999999987 567788889999999999997 99999999754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=272.63 Aligned_cols=266 Identities=18% Similarity=0.187 Sum_probs=218.6
Q ss_pred CCceeEEeeccccc--eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee--eecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s 77 (304)
.|++|++||+.+++ ....+. .+...|.+++|+|++++|++|+.||.|++||+.+++... .+..|...|.+++|+
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred CCCEEEEEeCCCCcEEeeeeec--CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 47899999999987 444443 445569999999999999999999999999998876443 346799999999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeE---eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC----------
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---------- 144 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~---------- 144 (304)
|++++|++++.|+.+ ++||+...... .... ......+.++.|+|+++++++++.|+.|++||+.
T Consensus 106 ~~~~~l~~~~~d~~v--~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 106 PNEKKFAVGSGSRVI--SICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp TTSSEEEEEETTSSE--EEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred CCCCEEEEEeCCCEE--EEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999999999999996 68998766532 2221 1122357899999999999999999999999953
Q ss_pred --------ccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 145 --------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 145 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
+.+.+..+.+|...|.+++|+|+++.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV--CLADADKKMAVATLASET--LPLLAVTFITESSL 258 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE--EEEEGGGTTEEEEEECSS--CCEEEEEEEETTEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE--EEEECCCCceeEEEccCC--CCeEEEEEecCCCE
Confidence 456677778999999999999999999999999986 699999998888877654 35789999999999
Q ss_pred EEEEeCCCcEEEEeCCC--ce--------------------------------ee------EEe-eccccceEEEEEc-c
Q psy4754 217 LFAGYNDYTINVWDSLK--CC--------------------------------RV------NHL-MGHENRVSCLQVS-P 254 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~--~~--------------------------------~~------~~~-~~h~~~i~~l~~s-p 254 (304)
+++| .|+.|++|++.. +. .. ..+ .+|..+|++++|. +
T Consensus 259 l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 337 (372)
T 1k8k_C 259 VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 337 (372)
T ss_dssp EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC
Confidence 9888 899999999876 31 00 223 4899999999966 6
Q ss_pred CC---CEEEEeecCCeeeeccccccc
Q psy4754 255 DG---TAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 255 ~g---~~lasgs~D~~i~~~~~~~~~ 277 (304)
+| .+|+||+.|++|++|+++...
T Consensus 338 ~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 338 GKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp TTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCcceeeEEEecCCCceEEEEecChh
Confidence 77 999999999999999986543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=267.60 Aligned_cols=245 Identities=18% Similarity=0.172 Sum_probs=203.9
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEECC--CCCeEEEEeCCCceEEEEe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~w 97 (304)
.|...|++++|+|++++|++|+.||+|++||+.++ +....+.+|..+|.+++|+| ++++|++|+.|+++ ++|
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v--~vw 86 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV--KLW 86 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE--EEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE--EEE
Confidence 34456999999999999999999999999999866 45667789999999999999 69999999999995 789
Q ss_pred eeCCC---------eeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccccceecc-------------
Q psy4754 98 DLRAD---------KEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLM------------- 153 (304)
Q Consensus 98 d~~~~---------~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~------------- 153 (304)
|+... +.+..+..+ ...+.++.|+|+ +.++++++.|+.|++||+++.+.+..+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred ecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99875 334444333 235788999999 9999999999999999988766554332
Q ss_pred CcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCC----CEEEEEeCCC
Q psy4754 154 GHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSG----RLLFAGYNDY 224 (304)
Q Consensus 154 ~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g----~~l~sg~~d~ 224 (304)
+|...+.+++|+|+ +..+++++.|+.+ .+|+....+. +..+..+ ...+.+++|+|++ ++|++|+.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAI--IYQRGKDGKLHVAAKLPGH--KSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEE--EEEECTTSCEEEEEECCCC--CSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcE--EEEccCCCceeeeeecCCC--CcceeEEEECCCCCCcceEEEEEcCCC
Confidence 68889999999997 8999999999986 3555555544 3333333 3468999999998 8999999999
Q ss_pred cEEEEeCCCc----------------------------------------------eeeEEeeccccceEEEEEccCCCE
Q psy4754 225 TINVWDSLKC----------------------------------------------CRVNHLMGHENRVSCLQVSPDGTA 258 (304)
Q Consensus 225 ~i~iwd~~~~----------------------------------------------~~~~~~~~h~~~i~~l~~sp~g~~ 258 (304)
.|++||+.++ +.+..+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999998764 567778899999999999999999
Q ss_pred EEEeecCCeeeecccccc
Q psy4754 259 FSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~ 276 (304)
|++|+.|+.|++|+...+
T Consensus 321 l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EEEEETTSCEEEEEECTT
T ss_pred EEEecCCCcEEEEecCcC
Confidence 999999999999998754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=260.77 Aligned_cols=289 Identities=21% Similarity=0.306 Sum_probs=220.1
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCc-----eeeeeecCCcCcEEEEEECCC
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKC-----CRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~d 79 (304)
+.++...+.+......+..|...|++++|+|+ +++|+|||.||+|+|||+.+. .+.+.+.+|..+|.+++|+|+
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC
Confidence 33444444332222223445556999999998 579999999999999998654 356678899999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-ceeccCcccc
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-VNHLMGHENR 158 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~ 158 (304)
+++|++|+.|+.+ ++|+............... ......+++++.++++++.|+.+++||...... .....+|...
T Consensus 98 g~~l~s~~~d~~i--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 98 GQFALSGSWDGTL--RLWDLTTGTTTRRFVGHTK--DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp SSEEEEEETTSEE--EEEETTTTEEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred CCEEEEEcccccc--eEEeecccceeeeecCCCC--ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence 9999999999995 6899987776655544322 345677899999999999999999999876543 3346789999
Q ss_pred eeEEEEcCCC--cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 159 VSCLQVSPDG--TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 159 v~~v~~sp~~--~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+..++|++++ ..+++++.|+.+ ++||+++.+....+..+. ..+++++|+|++++|++|+.|++|++||+.+...
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i--~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLV--KVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEE--EEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 9999998865 578899999996 689999988877776554 4679999999999999999999999999999998
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeecccc-----CCcee-EEEEEecCCccC
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRIT-----KPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~ 304 (304)
+..+..| ..|.++.|+|++.. ++++.|+.|++|+.+.+.....++.... .+... ..+.|+|+|+.|
T Consensus 250 ~~~~~~~-~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 250 LYTLDGG-DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp EEEEECS-SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred eeeecCC-ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 8888754 68999999998755 5666799999999876554433332211 12222 457888887653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=275.81 Aligned_cols=266 Identities=20% Similarity=0.264 Sum_probs=218.9
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeec-------------CCc
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM-------------GHE 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-------------~h~ 68 (304)
+.++++|++..++....+. .|...|++++|+| ++++|++|+.||.|++||+.+++....+. +|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVER--IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECC--CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeee--ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 3468899998887655444 3556699999999 99999999999999999998876554442 599
Q ss_pred CcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC---CCCEEEEEeCCCeEEEecCC
Q psy4754 69 NRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 69 ~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~sg~~dg~i~iwd~~ 144 (304)
..|.+++|+| ++++|++++.|+.+ ++||+...+....+.... .+..+.+++ ++.++++++.++.|++||+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTL--KVWDTNTLQTADVFNFEE---TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEE--EEEETTTTEEEEEEECSS---CEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeE--EEeeCCCCccceeccCCC---ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 9999999999 77899999999995 789999988877766433 345667776 45599999999999999999
Q ss_pred ccccceeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCc-eEEEeec-------------CceeeeeeEEE
Q psy4754 145 KCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADK-EVACYKK-------------DSILFGATSVD 209 (304)
Q Consensus 145 ~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~-~~~~~~~-------------~~~~~~~~~~~ 209 (304)
+.+.+..+.+|...|.+++|+|+++ .+++++.|+.+ ++||++..+ .+..+.. ......+.+++
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV--KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCE--EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcE--EEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 8888888999999999999999998 59999999996 689998765 2222211 11224578999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCc-----------------------------------------------eeeEEeec
Q psy4754 210 FSVSGRLLFAGYNDYTINVWDSLKC-----------------------------------------------CRVNHLMG 242 (304)
Q Consensus 210 ~s~~g~~l~sg~~d~~i~iwd~~~~-----------------------------------------------~~~~~~~~ 242 (304)
|+|++++|++++.|+.|++||+.++ +.+..+.+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence 9999999999999999999997543 45666788
Q ss_pred cccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|.+.|++++|+|++.+|++|+.|+.|++|++....
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 99999999999999999999999999999987654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=281.68 Aligned_cols=266 Identities=17% Similarity=0.175 Sum_probs=220.3
Q ss_pred CCceeEEeeccc----cceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCce------ee---eeecCC
Q psy4754 2 GKNHCRLFDLRA----DKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCC------RV---NHLMGH 67 (304)
Q Consensus 2 ~~~~v~~wd~~~----~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~------~~---~~~~~h 67 (304)
.|++|++||+.+ .+.... ...+...|++++|+|+ +.+|++|+.||+|++||+.+++ .. ..+.+|
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMAR--FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEE--CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred cCCeEEEeecccccccccchhh--ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 378999999998 234333 2344556999999998 8999999999999999998776 22 234679
Q ss_pred cCcEEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce----eeceeeeEEcCCC-CEEEEEeCCC---eE
Q psy4754 68 ENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI----LFGATSVDFSVSG-RLLFAGYNDY---TI 138 (304)
Q Consensus 68 ~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~-~~l~sg~~dg---~i 138 (304)
...|.+++|+|+ +++|++++.|+.+ ++||+...+.+..+..+.. ...+.+++|+|++ .++++++.|+ .|
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFA--SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCE--EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCE--EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 999999999999 7899999999995 7899999888777655321 2357899999997 6899999998 99
Q ss_pred EEecCCcc-ccceecc-CcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC-
Q psy4754 139 NVWDSLKC-CRVNHLM-GHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG- 214 (304)
Q Consensus 139 ~iwd~~~~-~~~~~~~-~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g- 214 (304)
++||+++. ..+..+. +|...|.+++|+| +++++++++.|+++ ++||+++.+.+..+..+. ..+.+++|+|++
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v--~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV--LLWNPESAEQLSQFPARG--NWCFKTKFAPEAP 318 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEE--EEECSSSCCEEEEEECSS--SCCCCEEECTTCT
T ss_pred EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCE--EEeeCCCCccceeecCCC--CceEEEEECCCCC
Confidence 99999885 5666777 8999999999999 89999999999996 699999988888776654 357899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCceeeEEee-----------------------------------ccccceEEEEEccCCCEE
Q psy4754 215 RLLFAGYNDYTINVWDSLKCCRVNHLM-----------------------------------GHENRVSCLQVSPDGTAF 259 (304)
Q Consensus 215 ~~l~sg~~d~~i~iwd~~~~~~~~~~~-----------------------------------~h~~~i~~l~~sp~g~~l 259 (304)
.+|++++.|+.|++||+.+........ .|..++.+++|+|+|++|
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 398 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV 398 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEE
T ss_pred CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEE
Confidence 899999999999999987654322211 167788899999999999
Q ss_pred EEeecCCeeeeccccc
Q psy4754 260 SSGSWDTTLRDEESKN 275 (304)
Q Consensus 260 asgs~D~~i~~~~~~~ 275 (304)
++|+.|++|++|++..
T Consensus 399 a~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 399 QITPDGKGVSITNPKI 414 (416)
T ss_dssp CBCTTSSCBCCBCCCC
T ss_pred EEeCCCCeEEEEEecc
Confidence 9999999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=280.44 Aligned_cols=237 Identities=14% Similarity=0.111 Sum_probs=193.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK- 103 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~- 103 (304)
..|++++|+|++++|++|+.|+.|++||+.++ +.+..+.+|..+|.+++|+|++++|++++.|+++ ++||+....
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v--~vwd~~~~~~ 89 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNA--YVYEKRPDGT 89 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSE--EEC------C
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeE--EEEEcCCCCc
Confidence 45999999999999999999999999999988 7788899999999999999999999999999995 789998765
Q ss_pred --eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc---ceeccC-cccceeEEEEcCCCcEEEEeecC
Q psy4754 104 --EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---VNHLMG-HENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~-h~~~v~~v~~sp~~~~las~s~d 177 (304)
....+..+ ...+.++.|+|+++++++++.|+.|++||+.+.+. ...+.+ |...|.+++|+|+++.+++++.|
T Consensus 90 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 90 WKQTLVLLRL--NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp CCCEEECCCC--SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred eeeeeEeccc--CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 33333222 33578999999999999999999999999987763 566777 99999999999999999999999
Q ss_pred CceEEEEeeecC------------------CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee---
Q psy4754 178 TTLRCRLFDLRA------------------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--- 236 (304)
Q Consensus 178 ~~i~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~--- 236 (304)
+++ ++||++. .+.+..+ .+...+.+++|+|++++|++++.|++|++||+.+++.
T Consensus 168 ~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 168 RKA--YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SCE--EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CEE--EEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 996 6899852 2233333 2224579999999999999999999999999988877
Q ss_pred -eEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 237 -VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 237 -~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+..+.+|..+|.+++|+|++++|++|+.|+.+..|.
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 788899999999999999999999998777774443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=276.90 Aligned_cols=266 Identities=17% Similarity=0.198 Sum_probs=218.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+ ..+...|++++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|+++
T Consensus 117 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp TTSCEEEECTTSCEEEEET--TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCcceeeec--ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 4688999999988775443 34455699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccce----------------------eeceeeeEEcCCCCEEEEEeCCCeEE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSI----------------------LFGATSVDFSVSGRLLFAGYNDYTIN 139 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~----------------------~~~~~~~~~s~~~~~l~sg~~dg~i~ 139 (304)
+|++++.|+++ ++||+.+.+.+..+..+.. ...+.++.|+|+++++++|+.||.|+
T Consensus 195 ~l~s~~~d~~v--~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 195 NVLSASLDGTI--RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEEEETTSCE--EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred EEEEEcCCCcE--EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 99999999995 7899998888777653210 12245567889999999999999999
Q ss_pred EecCCccccceec-cCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCE
Q psy4754 140 VWDSLKCCRVNHL-MGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 140 iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
+||+++.+.+..+ ..|...|.+++|+|+++ ++++++.|+.+ ++||+++.+. +..+..+. ...+.++ +.|++++
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i--~vwd~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~ 348 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML--AQWDLRSPECPVGEFLINE-GTPINNV-YFAAGAL 348 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE--EEEETTCTTSCSEEEEEST-TSCEEEE-EEETTEE
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE--EEEEcCCCcCchhhhhccC-CCCceEE-EeCCCCE
Confidence 9999887766655 45889999999999998 99999999996 6999988654 44444322 1245566 5568899
Q ss_pred EEEEeCCCcEEEEeCCCc---------eeeEEeeccccceEEEEEccCCC---EEEEeecCCeeeeccccc
Q psy4754 217 LFAGYNDYTINVWDSLKC---------CRVNHLMGHENRVSCLQVSPDGT---AFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~---------~~~~~~~~h~~~i~~l~~sp~g~---~lasgs~D~~i~~~~~~~ 275 (304)
|++++.|+.|++|++... .....+.+|...|.+++|+|++. .+++.+.++.+++|+..+
T Consensus 349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 349 FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999999999997652 22334667899999999999999 677777889999998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=281.90 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=206.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~ 78 (304)
.|++|+|||+.+++.........|...|++++|+| ++.+|+||+.||+|++||+.++....... .+..++.+++|+|
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 37899999999887655555555666699999998 68899999999999999997654332222 3445788999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccce---eccC
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVN---HLMG 154 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~---~~~~ 154 (304)
++++|++|+.|++| ++||+.. +.+..+..+ ...+.+++|+|++. ++++|+.|+.|++||+++..... ...+
T Consensus 220 ~~~~l~~g~~dg~i--~~wd~~~-~~~~~~~~h--~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~ 294 (435)
T 4e54_B 220 SSRMVVTGDNVGNV--ILLNMDG-KELWNLRMH--KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP 294 (435)
T ss_dssp TTTEEEEECSSSBE--EEEESSS-CBCCCSBCC--SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB
T ss_pred CCCEEEEEeCCCcE--eeeccCc-ceeEEEecc--cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeee
Confidence 99999999999995 7899864 344333332 23578999999876 68889999999999988765433 3467
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee----eeeeEEEEcCCCCEEEEEe---------
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL----FGATSVDFSVSGRLLFAGY--------- 221 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~l~sg~--------- 221 (304)
|...|.+++|+|++++|++++.|++| ++||+++.+....+..+... ..+....|+|++.+++++.
T Consensus 295 h~~~v~~~~~spdg~~l~s~~~D~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 372 (435)
T 4e54_B 295 HRHPVNAACFSPDGARLLTTDQKSEI--RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSC 372 (435)
T ss_dssp CSSCEEECCBCTTSSEEEEEESSSCE--EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCS
T ss_pred ccccccceeECCCCCeeEEEcCCCEE--EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEE
Confidence 99999999999999999999999996 68999887765544322110 1123456777777766654
Q ss_pred ---CCCcEEEEeCCCceeeEEee-ccccceEEE-EEccCCCEEEEeecCCeeeeccccccc
Q psy4754 222 ---NDYTINVWDSLKCCRVNHLM-GHENRVSCL-QVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 222 ---~d~~i~iwd~~~~~~~~~~~-~h~~~i~~l-~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.++.|++||..+++.+..+. +|...|.++ +|+|+|.+||+|+ |++|++|++.++.
T Consensus 373 ~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 373 TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp STTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 34679999999998888765 588889988 6999999999987 8899999987654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=278.13 Aligned_cols=263 Identities=16% Similarity=0.165 Sum_probs=197.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|++||+.++..........+...|.+++|+|++++|++|+.||+|++||+.+++ ....+.+|...|.+++|+|
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence 4789999999988322222233455569999999999999999999999999998876 5666788999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCee---EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC-----------
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL----------- 144 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~----------- 144 (304)
++++|++|+.|+++ ++||+...+. ...+... +...+.+++|+|+++++++++.|+.|++||+.
T Consensus 111 ~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 187 (377)
T 3dwl_C 111 NEDKFAVGSGARVI--SVCYFEQENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS 187 (377)
T ss_dssp TSSCCEEEESSSCE--EECCC-----CCCCEEECSS-CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC
T ss_pred CCCEEEEEecCCeE--EEEEECCcccceeeeEeecc-cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc
Confidence 99999999999995 7899987653 3444330 22357899999999999999999999999974
Q ss_pred -------ccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce----EEEeecCceeeeeeEEEEcCC
Q psy4754 145 -------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE----VACYKKDSILFGATSVDFSVS 213 (304)
Q Consensus 145 -------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~s~~ 213 (304)
..+.+..+ +|...|.+++|+|+++++++++.|++| ++||+++.+. +..+..+. ..+.+++|+|+
T Consensus 188 ~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~ 262 (377)
T 3dwl_C 188 VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV--TIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANE 262 (377)
T ss_dssp SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE--C-CEECSTTSCEEECCCEECSS--SCEEEEEEEET
T ss_pred ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE--EEEECCCCCCcceeeEeecCCC--CceEEEEEcCC
Confidence 24445556 899999999999999999999999996 6999998876 44554443 35789999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCce-e--------------------------e---------EEe----------------e
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCC-R--------------------------V---------NHL----------------M 241 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~-~--------------------------~---------~~~----------------~ 241 (304)
+++|++|+.++.+ +|+..... . . ..+ .
T Consensus 263 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 341 (377)
T 3dwl_C 263 SAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT 341 (377)
T ss_dssp TEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred CCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence 9999999876666 66543111 0 0 001 1
Q ss_pred ccccceEEEEEccCC-C---EEEEeecCCeeeeccc
Q psy4754 242 GHENRVSCLQVSPDG-T---AFSSGSWDTTLRDEES 273 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g-~---~lasgs~D~~i~~~~~ 273 (304)
.|.+.|+++++.+.. . .|+||+.|++|++|++
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 299999999976643 3 6999999999999984
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=268.47 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=210.2
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
+...|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.+ ++||+...
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i--~vwd~~~~ 84 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA--YVWTLKGR 84 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE--EEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE--EEEECCCC
Confidence 34569999999999999999999999999998887 788889999999999999999999999999995 78999877
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc---c-eeccCcccceeEEEEcCCCcEEEEeecCC
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---V-NHLMGHENRVSCLQVSPDGTAFSSGSWDT 178 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---~-~~~~~h~~~v~~v~~sp~~~~las~s~d~ 178 (304)
+.............+.++.|+|+++++++++.|+.|++||+..... . .....|...|.+++|+|+++.+++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 6544443222333578999999999999999999999999876552 2 22367899999999999999999999999
Q ss_pred ceEEEEeeec------------------CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 179 TLRCRLFDLR------------------ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 179 ~i~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
.+ ++||++ ..+.+..+..+. ..+.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 165 ~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 165 KC--RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC--GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp CE--EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS--SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CE--EEEEcccccccccccccccccccchhhheEecCCCC--CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 96 689953 455566555433 35789999999999999999999999999999999999
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
..|..+|.+++|+|++.+|++| .|+.|++|+...
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999999999888 899999999876
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=256.86 Aligned_cols=257 Identities=19% Similarity=0.224 Sum_probs=215.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|++||+.+++....+.. +...|.+++|+|++.+|++|+.||.|++|++... +.+..+.+|...|.+++|
T Consensus 37 ~dg~v~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 112 (313)
T 3odt_A 37 RDGTVRLWSKDDQWLGTVVYT--GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-- 112 (313)
T ss_dssp TTSEEEEEEESSSEEEEEEEE--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--
T ss_pred cCCcEEEEECCCCEEEEEeec--CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--
Confidence 478999999998877655443 3456999999999999999999999999998654 556778899999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccC-cc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HE 156 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~ 156 (304)
++++|++++.|+.+ ++|| ..+....+..+. ..+.++.+.+ +++++++++.|+.|++||.. .....+.. |.
T Consensus 113 ~~~~l~~~~~d~~i--~~~d--~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~ 184 (313)
T 3odt_A 113 QDGVVISGSWDKTA--KVWK--EGSLVYNLQAHN--ASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHN 184 (313)
T ss_dssp ETTEEEEEETTSEE--EEEE--TTEEEEEEECCS--SCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCS
T ss_pred cCCEEEEEeCCCCE--EEEc--CCcEEEecccCC--CceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCc
Confidence 57899999999995 6899 445555554432 2456788877 89999999999999999943 44555555 89
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
..|.+++|+|++. +++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++ .|++++.|+.|++||+.+++.
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~dg~i--~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSNDGLI--KLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp SCEEEEEEEETTE-EEEEETTSEE--EEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE
T ss_pred ccEEEEEEcCCCe-EEEccCCCeE--EEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCCce
Confidence 9999999999998 9999999985 699999988888776554 467999999999 588999999999999999999
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+..+..|..+|.+++|+|+++ +++++.|+.|++|+...+.
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 259 KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 999999999999999999998 6679999999999987654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=267.44 Aligned_cols=244 Identities=16% Similarity=0.160 Sum_probs=204.1
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeeeecCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|++++|+|++++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+++ +++|++|+.|++| ++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v--~iwd~ 86 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV--LIWKE 86 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE--EEEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE--EEEEc
Confidence 344569999999999999999999999999997 66777888999999999999987 8999999999995 78999
Q ss_pred CCCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc--cceeccCcccceeEEEEcC-------
Q psy4754 100 RADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSP------- 166 (304)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp------- 166 (304)
...+ .+..+..+ ...+.++.|+|+ +.++++++.|+.|++||+.+.. ....+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 87 ENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp ETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred CCCceeEeeeecCC--CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 8876 44433332 235789999999 9999999999999999998763 3335678999999999999
Q ss_pred ------CCcEEEEeecCCceEEEEeeecCCceE----EEeecCceeeeeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q psy4754 167 ------DGTAFSSGSWDTTLRCRLFDLRADKEV----ACYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 167 ------~~~~las~s~d~~i~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~s~~---g~~l~sg~~d~~i~iwd~~~ 233 (304)
++..+++++.|+.+ ++||++..+.. ..+..+. ..+.+++|+|+ +++|++++.|+.|++||+.+
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLV--KIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CTTCEEEEEETTSCE--EEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCEEEEEeCCCeE--EEEEecCCCcceeeEEEEeccc--CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999996 68999876532 2333332 46789999999 89999999999999999887
Q ss_pred ce-----eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 234 CC-----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 234 ~~-----~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+. .+.....|...|++++|+|+|++|++++.|+.|++|+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 53 2222344889999999999999999999999999999874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=270.10 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=211.7
Q ss_pred ccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.+...|++++|+|++ ++|++|+.||+|++||+.+++....+. +|...|.+++|+| ++++|++++.|+++ ++||+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i--~iwd~ 148 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT--TLRDF 148 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE--EEEET
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE--EEEEC
Confidence 344569999999999 899999999999999999877666554 6999999999999 78999999999995 78999
Q ss_pred CCCeeEeEEeccc-eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeecC
Q psy4754 100 RADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWD 177 (304)
Q Consensus 100 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d 177 (304)
.. ..+..+.... ....+.+++|+|+++++++|+.|+.|++||+ +.+.+..+.+|...|.+++|+|+++ .+++++.|
T Consensus 149 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 149 SG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp TS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred CC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 86 4444443321 1234789999999999999999999999998 4667778889999999999999998 99999999
Q ss_pred CceEEEEeeecC----CceEEEeecCceeeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCceeeEEeeccc--------
Q psy4754 178 TTLRCRLFDLRA----DKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-------- 244 (304)
Q Consensus 178 ~~i~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------- 244 (304)
+++ ++||+++ ...+..+.. ...+.+++|+| ++++|++++.|+.|++||+.++..+..+.+|.
T Consensus 227 ~~i--~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 227 ATV--KLWDLRNIKDKNSYIAEMPH---EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp SEE--EEEEGGGCCSTTCEEEEEEC---SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred CEE--EEEeCCCCCcccceEEEecC---CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 996 6899987 445544432 24679999999 99999999999999999998887777776553
Q ss_pred ---------cceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeE-EEEEecCCcc
Q psy4754 245 ---------NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGL-TVYFQDRGRS 303 (304)
Q Consensus 245 ---------~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 303 (304)
+.+.+++|+|+|++ +|+.|++|++|+...+.....++... ....+ .+.|+|+++.
T Consensus 302 ~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~--~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN--AAGIISLNKFSPTGDV 366 (383)
T ss_dssp CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT--BCSCCCEEEECTTSSE
T ss_pred ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC--CCceEEEEEEecCccE
Confidence 34556788888877 88899999999987665433333211 11222 3477777764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=289.50 Aligned_cols=229 Identities=13% Similarity=0.033 Sum_probs=181.7
Q ss_pred EEEeeCCCcEEEEeCCCceee----eeecCCcCcEEEEEECCC------CCeEEEEeCCCceEEEEeeeCCCeeE-----
Q psy4754 41 LFAGYNDYTINVWDSLKCCRV----NHLMGHENRVSCLQVSPD------GTAFSSGSWDTTLRCRLFDLRADKEV----- 105 (304)
Q Consensus 41 l~tg~~dg~v~iwd~~~~~~~----~~~~~h~~~V~~l~~s~d------~~~l~sgs~D~~i~~~~wd~~~~~~~----- 105 (304)
+++++.|++|+|||+.+++.. ..+.+|.+.|.+++|+|+ +.+|+|++.|++| ++||+......
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtv--rlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI--NFLEIIDNATDVHVFK 253 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCE--EEEECCCCSSSSSEEE
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeE--EEEEcCCCccccccce
Confidence 444668899999998776532 345678899999999997 5799999999995 78999754311
Q ss_pred ------eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCcccceeEE--EEcCCC-cEEEEee
Q psy4754 106 ------ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCL--QVSPDG-TAFSSGS 175 (304)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v--~~sp~~-~~las~s 175 (304)
..+..+. ..+.+++|+++ ..|++|+.||+|++||+.+.. +...+.+|..+|.+| +|+|++ ++|||||
T Consensus 254 ~~~~p~~~l~~h~--~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 254 MCEKPSLTLSLAD--SLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp CCCSCSEEECCTT--TCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred eecCceEEEEcCC--CCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec
Confidence 1222221 24688999986 489999999999999998753 445678999999999 578887 8999999
Q ss_pred cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 176 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
.|+++ ++||+++.+....+..+.....+.+++|+|+++.+++++.|++|++||+.++..+.++.+|.+.|++|+|+|+
T Consensus 331 ~D~tv--klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 331 VDGYF--YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp TTSEE--EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred cCCeE--EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 99996 6999998776544433221123578999999999999999999999999998888889999999999999999
Q ss_pred CCEEEEeecCCeeeecccccc
Q psy4754 256 GTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 256 g~~lasgs~D~~i~~~~~~~~ 276 (304)
|+.|+|||.|++|++|+...+
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS
T ss_pred CCeEEEEECCCEEEEEechHh
Confidence 999999999999999997654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=276.41 Aligned_cols=269 Identities=17% Similarity=0.176 Sum_probs=216.0
Q ss_pred CCceeEEeeccccceEee-e-eccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-------eeeeeecCCcCcE
Q psy4754 2 GKNHCRLFDLRADKEVAC-Y-KKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC-------CRVNHLMGHENRV 71 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~-~-~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~-------~~~~~~~~h~~~V 71 (304)
+|++|+|||+........ . ....|...|++++|+| ++.+|++|+.||+|++||+.++ +.+..+.+|...|
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 578999999976533211 1 1223445599999999 8999999999999999999887 5677888999999
Q ss_pred EEEEECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce
Q psy4754 72 SCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 72 ~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
.+++|+|++ ++|++|+.|+++ ++||+.+.+.+..+....+...+.+++|+|++.++++++.|+.|++||+++.+.+.
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVI--LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCE--EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEECcCCCCEEEEEcCCCEE--EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 999999998 699999999995 78999998888777312223357899999999999999999999999999988888
Q ss_pred ec-cCcccc-eeEEEEcCCCcEEEEe---ecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEE-EeCC
Q psy4754 151 HL-MGHENR-VSCLQVSPDGTAFSSG---SWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFA-GYND 223 (304)
Q Consensus 151 ~~-~~h~~~-v~~v~~sp~~~~las~---s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~s-g~~d 223 (304)
.+ .+|... +.++.|+|+++++++| +.|+.+ ++||+++.+. +..... .....+.+++|+|++++|++ |+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i--~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV--ALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE--EEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTC
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE--EEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCC
Confidence 77 788876 8999999999999998 688885 6999987654 222221 11235789999999999865 5579
Q ss_pred CcEEEEeCCCcee-eEEeec--cccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 224 YTINVWDSLKCCR-VNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 224 ~~i~iwd~~~~~~-~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+.|++||+.++++ +..+.. |..+|.+++|+|++.++++ .|+.+++|++..+.
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 9999999988763 444444 5699999999999998875 46799999886643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=279.99 Aligned_cols=266 Identities=11% Similarity=0.124 Sum_probs=213.0
Q ss_pred CCceeEEeeccc---cceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC---CceeeeeecC---------
Q psy4754 2 GKNHCRLFDLRA---DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---KCCRVNHLMG--------- 66 (304)
Q Consensus 2 ~~~~v~~wd~~~---~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~---~~~~~~~~~~--------- 66 (304)
.|++|++||+.+ +..........+...|++++|+|++.+|++|+.||+|++||+. +++.++.+.+
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc
Confidence 478999999988 4311101111244569999999999999999999999999984 4433332221
Q ss_pred ---CcCcEEEEE--ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEe
Q psy4754 67 ---HENRVSCLQ--VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141 (304)
Q Consensus 67 ---h~~~V~~l~--~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iw 141 (304)
+...+.++. +++++++|++|+.|++| ++||+.+.+.+..+....+...+.+++|+|++.++++|+.||.|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRV--IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEEETTSEE--EEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CcccccCceEEEEEEcCCCCEEEEEeCCCeE--EEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 456677776 66889999999999995 79999998888877753223367899999999999999999999999
Q ss_pred cCCccccceecc-CcccceeEEEEc----CCCcEEEEeecCCceEEEEeeecCCceEEEeecCc----------------
Q psy4754 142 DSLKCCRVNHLM-GHENRVSCLQVS----PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---------------- 200 (304)
Q Consensus 142 d~~~~~~~~~~~-~h~~~v~~v~~s----p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---------------- 200 (304)
|+++.+.+.++. .|..+|.+++++ |+++.+++++.|+.| ++||+++++.+..+..+.
T Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 242 DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL--TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp ETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE--EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE--EEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 999888877765 788899999655 568899999999985 699999888777665332
Q ss_pred --------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec------------------------------
Q psy4754 201 --------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG------------------------------ 242 (304)
Q Consensus 201 --------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~------------------------------ 242 (304)
....+.+++|+ ++++|++|+.|+.|++||+.+++.+..+.+
T Consensus 320 ~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH 398 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----
T ss_pred cceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccc
Confidence 22347788999 779999999999999999998887777765
Q ss_pred -------cccceEEEEEccC--CCEEEEeecCCeeeecc
Q psy4754 243 -------HENRVSCLQVSPD--GTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 243 -------h~~~i~~l~~sp~--g~~lasgs~D~~i~~~~ 272 (304)
|...|++++|+++ +.+|+||+.|+.|++|+
T Consensus 399 ~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 399 SVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 78999999999999994
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=259.70 Aligned_cols=270 Identities=19% Similarity=0.203 Sum_probs=224.3
Q ss_pred eeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 20 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.....|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+++ ++||+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i--~iwd~ 103 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI--KLWDV 103 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE--EEEET
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE--EEEEC
Confidence 3344555669999999999999999999999999999999999999999999999999999999999999995 78999
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc-----------cceeccCccc--ceeE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC-----------RVNHLMGHEN--RVSC 161 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~-----------~~~~~~~h~~--~v~~ 161 (304)
.+.+.+..+... ..+.++.|+|++.++++++.+ +.|++||+.+.. .+..+..|.. .+.+
T Consensus 104 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQCVATWKSP---VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCEEEEEECS---SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcEEEEeecC---CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 988888777633 246789999999999999999 999999976543 2334455665 8999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecC-CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
++|+|+++.+++++.|+.+ ++||+++ .+.+..+..+. ..+.+++|+|++++|++++.|+.|++||+.++..+..+
T Consensus 181 ~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKI--SKYDVSNNYEYVDSIDLHE--KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp EEECGGGCEEEEEETTSEE--EEEETTTTTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEE--EEEECCCCcEeEEEEecCC--CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 9999999999999999986 6999988 56666665543 35789999999999999999999999999998888877
Q ss_pred eccccceEEEEEccCCCEEEEeecCC--------------eeeeccccccchhheeeccccCCcee-EEEEEecCCcc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDT--------------TLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRS 303 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~--------------~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 303 (304)
. +..++.+++|+|+++++++++.|+ .+++|+...+.....+. .+... ..+.++|+++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ----GHFGPLNTVAISPQGTS 329 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSSE
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee----cccCcEEEEEECCCCCE
Confidence 6 788999999999999999999988 78899876654333222 22232 34677777654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=275.01 Aligned_cols=246 Identities=18% Similarity=0.261 Sum_probs=199.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-----------eeeeecCCc------------CcEEEEEECCCC--
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-----------RVNHLMGHE------------NRVSCLQVSPDG-- 80 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-----------~~~~~~~h~------------~~V~~l~~s~d~-- 80 (304)
...|++++|+|+|++||+|+.||.|++||+.+++ ....+.+|. +.|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3459999999999999999999999999998766 477788998 889999999998
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEe---------------------------------------EEeccceeeceeeeE
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVA---------------------------------------CYKKDSILFGATSVD 121 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 121 (304)
.+|++++.|++| ++||+....... .+ ...+...+.+++
T Consensus 108 ~~l~s~s~d~~i--~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~ 184 (447)
T 3dw8_B 108 AQFLLSTNDKTI--KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-ANAHTYHINSIS 184 (447)
T ss_dssp SEEEEEECSSCE--EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE-CSCCSSCCCEEE
T ss_pred ceEEEeCCCCeE--EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe-ccCCCcceEEEE
Confidence 799999999996 689987543311 11 111223477899
Q ss_pred EcCCCCEEEEEeCCCeEEEecCCc-cccce-------eccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCce
Q psy4754 122 FSVSGRLLFAGYNDYTINVWDSLK-CCRVN-------HLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 122 ~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~ 192 (304)
|+|+++++++| .|+.|++||+.+ ...+. .+.+|...|.+++|+|++ +.+++|+.|++| ++||+++.+.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i--~iwd~~~~~~ 261 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI--RLCDMRASAL 261 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE--EEEETTTCSS
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE--EEEECcCCcc
Confidence 99999999998 799999999984 33333 367899999999999998 999999999996 6999988775
Q ss_pred ----EEEeecCcee----------eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceeeEEeeccccc-----------
Q psy4754 193 ----VACYKKDSIL----------FGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENR----------- 246 (304)
Q Consensus 193 ----~~~~~~~~~~----------~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~----------- 246 (304)
+..+..+... ..+.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 4555544310 15789999999999999998 9999999987 7788888888642
Q ss_pred ----eEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 247 ----VSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 247 ----i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+..++|+|++.+|++|+.|+.|++|+...+..
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 33499999999999999999999999876543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=266.12 Aligned_cols=260 Identities=17% Similarity=0.202 Sum_probs=207.4
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeC----CCce------eeeeecC--------
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDS----LKCC------RVNHLMG-------- 66 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~----~~~~------~~~~~~~-------- 66 (304)
+.+||+...... +....+...|++++|+|+++ +||+|+.||.|++||+ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 27 DSSDDLDGFVKI--LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp -------CCCEE--CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccchhhhhh--eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 566777665433 23333345699999999999 9999999999999999 7776 3444433
Q ss_pred --CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC
Q psy4754 67 --HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 67 --h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
|.+.|.+++|+|++++|++|+.|+.+ ++|| ...+.+..+..+. ..+.++.|+|+++++++++.|+.|++||+.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i--~i~~-~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGEL--RLWN-KTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCE--EEEE-TTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeE--EEEe-CCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 68899999999999999999999995 6899 5555666555433 357889999999999999999999999986
Q ss_pred ccccc--------------------------------------------------------eeccCcccceeEEEEcCCC
Q psy4754 145 KCCRV--------------------------------------------------------NHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 145 ~~~~~--------------------------------------------------------~~~~~h~~~v~~v~~sp~~ 168 (304)
+.+.+ ..+.+|...|.+++|+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 54332 2334688899999999999
Q ss_pred cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 248 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~ 248 (304)
+.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++ ++++++.|+.|++||+.+++.+..+..|..+|.
T Consensus 260 ~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 260 KLLLSASDDGTL--RIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TEEEEEETTSCE--EEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CEEEEEcCCCEE--EEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 999999999996 689999887777665443 357899999999 999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+++|+|++.+|++++.|+.|++|+.....
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999999999999999987654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=285.35 Aligned_cols=247 Identities=24% Similarity=0.383 Sum_probs=208.6
Q ss_pred ccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCc-----eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEe
Q psy4754 24 SILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKC-----CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~w 97 (304)
.|...|++++|+|++ .+|+||+.|++|++||+.+. ...+.+.+|...|.+++|+|++++|+||+.|++| ++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v--~vw 457 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL--RLW 457 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE--EEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE--EEE
Confidence 455569999999875 79999999999999998653 3456788999999999999999999999999995 799
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce---eccCcccceeEEEEcCCC--cEEE
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN---HLMGHENRVSCLQVSPDG--TAFS 172 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~v~~sp~~--~~la 172 (304)
|+.+......+..+. ..+.+++|+|+++++++|+.|++|++||........ ...+|...|.+++|+|++ ..++
T Consensus 458 d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHT--KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp ETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred ECCCCcceeEEeCCC--CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 999988887776543 357899999999999999999999999976543322 235799999999999987 5899
Q ss_pred EeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
+++.|++| ++||+++.+....+..+. ..+++++|+|++++|++|+.|++|++||+.+++.+..+. +...|.+++|
T Consensus 536 s~s~d~~v--~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 610 (694)
T 3dm0_A 536 SASWDKTV--KVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCF 610 (694)
T ss_dssp EEETTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEE
T ss_pred EEeCCCeE--EEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEE
Confidence 99999996 699999888777776554 467999999999999999999999999999998887775 4568999999
Q ss_pred ccCCCEEEEeecCCeeeeccccccchhh
Q psy4754 253 SPDGTAFSSGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 253 sp~g~~lasgs~D~~i~~~~~~~~~~~~ 280 (304)
+|++..|++++ |+.|++|++..+....
T Consensus 611 sp~~~~l~~~~-~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 611 SPNRYWLCAAT-EHGIKIWDLESKSIVE 637 (694)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred cCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence 99998887765 6779999987655433
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=269.72 Aligned_cols=259 Identities=22% Similarity=0.327 Sum_probs=219.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEEC--CC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS--PD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s--~d 79 (304)
.|++|++||+.+++.+..+. .+...|.+++|+|++ ++++|+.||+|++||+.+++.+..+.+|..+|.+++|+ ++
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 216 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216 (464)
T ss_dssp TTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSS
T ss_pred CCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCC
Confidence 47899999999998876654 445569999999988 99999999999999999999999999999999999998 57
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeE-----------------------EeccceeeceeeeEEcCCCCEEEEEeCCC
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVAC-----------------------YKKDSILFGATSVDFSVSGRLLFAGYNDY 136 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~-----------------------~~~~~~~~~~~~~~~s~~~~~l~sg~~dg 136 (304)
+++|++|+.|+++ ++||+........ ...+ .. ....+++++.++++|+.|+
T Consensus 217 ~~~l~s~s~d~~i--~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~~~~~~~~~l~~~~~d~ 290 (464)
T 3v7d_B 217 IKYIVTGSRDNTL--HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH--MA--SVRTVSGHGNIVVSGSYDN 290 (464)
T ss_dssp CEEEEEEETTSCE--EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC--SS--CEEEEEEETTEEEEEETTS
T ss_pred CCEEEEEcCCCcE--EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc--cc--eEEEEcCCCCEEEEEeCCC
Confidence 7899999999996 6899986553321 1111 11 1234578899999999999
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
.|++||+.+.+.+..+.+|...|.+++|+|+++.+++|+.|+++ ++||+++++.+..+..+. ..+.+++|+ +++
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i--~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~ 364 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI--RIWDLENGELMYTLQGHT--ALVGLLRLS--DKF 364 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEEC--SSE
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE--EEEECCCCcEEEEEeCCC--CcEEEEEEc--CCE
Confidence 99999999998888999999999999999999999999999996 689999998888876654 356788886 689
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|++|+.|++|++||+.++...... .|...+..++|+|++.+|++|+ |+.|++|+...+.
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 999999999999999887766554 3677888999999999999999 9999999987754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=274.76 Aligned_cols=270 Identities=19% Similarity=0.187 Sum_probs=204.2
Q ss_pred cceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCcee--eeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 27 FGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 27 ~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..|+|++|+|. +.+||+|+.||+|+|||+.+++. ...+.+|.++|++|+|+| ++++|+|||.|++| ++||+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v--~iwd~~~~ 197 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT--RLQDFKGN 197 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE--EEEETTSC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE--EEeeccCC
Confidence 34999999994 57999999999999999987653 344578999999999998 78999999999996 78999865
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeecCCceE
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLR 181 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~ 181 (304)
........+.....+.+++|++++.++++|+.||.|++||+.. +.+..+.+|...|.+++|+|++. ++++|+.|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v- 275 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV- 275 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBC-
T ss_pred ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCccee-
Confidence 4433333333333467899999999999999999999999864 55677889999999999999875 78899999996
Q ss_pred EEEeeecCCceEEEee-cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc------ceEEEEEcc
Q psy4754 182 CRLFDLRADKEVACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN------RVSCLQVSP 254 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~------~i~~l~~sp 254 (304)
++||++..+....+. ...+...|++++|+|+|++|++|+.|++|++||+.++.....+..|.. .+....|+|
T Consensus 276 -~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
T 4e54_B 276 -KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354 (435)
T ss_dssp -CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred -eEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence 689998765433221 112234678999999999999999999999999998887777766643 234456777
Q ss_pred CCCEEEEee------------cCCeeeeccccccchhheeeccccCCcee--EEEEEecCCccC
Q psy4754 255 DGTAFSSGS------------WDTTLRDEESKNRYMQYLLRSRITKPTQG--LTVYFQDRGRSI 304 (304)
Q Consensus 255 ~g~~lasgs------------~D~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 304 (304)
++..+++++ .++.|++|+...+.....+.. .+..+ ...+|+|+|+.|
T Consensus 355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~---~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD---PESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC---SSCCCCCCEEEECTTSSCE
T ss_pred CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC---CCCCcEEEEEEECCCCCEE
Confidence 777776664 335789998766543332221 11222 234678877653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=290.44 Aligned_cols=246 Identities=21% Similarity=0.299 Sum_probs=218.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|...|++++|+|+|++|++|+.||.|++||..+++.+..+.+|..+|.+++|+|++++|++|+.|+.+ ++||+.+++.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i--~vw~~~~~~~ 89 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI--RVFNYNTGEK 89 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE--EEEETTTCCE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE--EEEECCCCcE
Confidence 44559999999999999999999999999999999999999999999999999999999999999995 7899998888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcC-CCcEEEEeecCCceEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRC 182 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i 182 (304)
+..+..+. ..+.++.|+|+++++++++.|+.|++||+.+. .....+.+|..+|.+++|+| +++.+++++.|+++
T Consensus 90 ~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v-- 165 (814)
T 3mkq_A 90 VVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV-- 165 (814)
T ss_dssp EEEEECCS--SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE--
T ss_pred EEEEecCC--CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE--
Confidence 77776543 35789999999999999999999999998876 55667789999999999999 88999999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
++||+++.+....+..+. ...+..++|+| ++++|++|+.|+.|++||..++..+..+.+|..+|.+++|+|++.+|+
T Consensus 166 ~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 689998777655554332 13568899999 999999999999999999999999999999999999999999999999
Q ss_pred EeecCCeeeeccccccc
Q psy4754 261 SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 261 sgs~D~~i~~~~~~~~~ 277 (304)
+++.|+.|++|+...+.
T Consensus 245 ~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp EEETTSCEEEEETTTCS
T ss_pred EEeCCCeEEEEECCCCc
Confidence 99999999999986643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=266.12 Aligned_cols=253 Identities=17% Similarity=0.178 Sum_probs=213.1
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce------eeeeecCCcCcEEEEEECCC----C---CeEEEEeCCC
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC------RVNHLMGHENRVSCLQVSPD----G---TAFSSGSWDT 90 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~------~~~~~~~h~~~V~~l~~s~d----~---~~l~sgs~D~ 90 (304)
.|...|++++|+| ++|++|+.||+|++||+.+++ .+..+.+|..+|.+++|+|+ + ++|++++.|+
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 4455699999998 899999999999999998877 67788899999999999999 9 9999999999
Q ss_pred ceEEEEeeeCCCee-----EeEEeccce---eeceeeeEEc----CCCCE-EEEEeCCCeEEEecCCc------cccce-
Q psy4754 91 TLRCRLFDLRADKE-----VACYKKDSI---LFGATSVDFS----VSGRL-LFAGYNDYTINVWDSLK------CCRVN- 150 (304)
Q Consensus 91 ~i~~~~wd~~~~~~-----~~~~~~~~~---~~~~~~~~~s----~~~~~-l~sg~~dg~i~iwd~~~------~~~~~- 150 (304)
.| ++||+...+. ...+..+.. ...+.++.|+ |++.+ +++++.|+.|++||+.+ ...+.
T Consensus 92 ~i--~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 92 DL--LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp CE--EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CE--EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 95 7899987665 555544310 1357889999 99999 99999999999999887 66665
Q ss_pred ----ec-------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeec---Cc-eeeeeeEEEEcCCCC
Q psy4754 151 ----HL-------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK---DS-ILFGATSVDFSVSGR 215 (304)
Q Consensus 151 ----~~-------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~---~~-~~~~~~~~~~s~~g~ 215 (304)
.+ ..|...|.+++|+|++ .+++++.|+.+ ++||+++.+.+..+.. +. ....+.+++|+|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV--QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE--EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE--EEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 66 4488999999999999 99999999986 6999999888777765 30 024678999999999
Q ss_pred EEEEEeCC---CcEEEEeCCCceeeEEeec-------------cccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 216 LLFAGYND---YTINVWDSLKCCRVNHLMG-------------HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 216 ~l~sg~~d---~~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
+|++++.| +.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.|+.|++|+.......
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 99999999 9999999999999999998 9999999999999999999999999999998765544
Q ss_pred heee
Q psy4754 280 YLLR 283 (304)
Q Consensus 280 ~~~~ 283 (304)
..++
T Consensus 327 ~~~~ 330 (397)
T 1sq9_A 327 TTLN 330 (397)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=269.88 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=209.4
Q ss_pred EeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCC---ceeee-e-ecCCcCcEEEEEECCCCC
Q psy4754 8 LFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK---CCRVN-H-LMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 8 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~---~~~~~-~-~~~h~~~V~~l~~s~d~~ 81 (304)
.|+.. ++.+..+. ..|...|++++|+| ++++|++|+.||+|++||+.+ +...+ . ..+|..+|.+++|+|+++
T Consensus 47 ~w~~~-g~~~~~~~-~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNLR-GKLIATLM-ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGCC-CCEEEEEC-TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred ccccc-ceEEeeec-cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence 46643 44444331 23445699999999 999999999999999999876 33221 1 225999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeC---CCeeEeEEeccc----------eeeceeeeE--EcCCCCEEEEEeCCCeEEEecCCcc
Q psy4754 82 AFSSGSWDTTLRCRLFDLR---ADKEVACYKKDS----------ILFGATSVD--FSVSGRLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~---~~~~~~~~~~~~----------~~~~~~~~~--~s~~~~~l~sg~~dg~i~iwd~~~~ 146 (304)
+|++|+.|+++ ++||+. .++.......+. ....+.++. +++++.++++|+.|+.|++||+++.
T Consensus 125 ~l~s~s~dg~i--~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 125 AFAVSSKDGQI--IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp EEEEEETTSEE--EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred EEEEEeCCCEE--EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 99999999995 789984 333333222110 111233343 5678999999999999999999998
Q ss_pred ccceeccC--cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEE----cCCCCEEEEE
Q psy4754 147 CRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF----SVSGRLLFAG 220 (304)
Q Consensus 147 ~~~~~~~~--h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----s~~g~~l~sg 220 (304)
+.+..+.+ |...|.+++|+|+++.+++|+.|+++ ++||+++.+.+..+..... ..+.++++ +|++.+|++|
T Consensus 203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 203 ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGII--DIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCE--EEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEE
T ss_pred eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeE--EEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEE
Confidence 88888887 89999999999999999999999996 6999999888777652221 36788854 4678899999
Q ss_pred eCCCcEEEEeCCCceeeEEeec--------------------------cccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMG--------------------------HENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~--------------------------h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+.|+.|++||+.+++.+..+.+ |...|++++|+ ++.+|++|+.|+.|++|++.
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 9999999999999888877764 45668889999 77999999999999999998
Q ss_pred ccchhheeec
Q psy4754 275 NRYMQYLLRS 284 (304)
Q Consensus 275 ~~~~~~~~~~ 284 (304)
.+.....+..
T Consensus 359 ~~~~~~~~~~ 368 (437)
T 3gre_A 359 ELSSSKAVIS 368 (437)
T ss_dssp CGGGCEEEEC
T ss_pred CcccceEEec
Confidence 7765555543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=263.47 Aligned_cols=256 Identities=25% Similarity=0.425 Sum_probs=219.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++++..+. .+...|.+++|+ +.++++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++
T Consensus 137 ~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 137 DDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp TTSCEEEEETTTCCEEEECC--CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred CCCcEEEEECCCCcEEEEEc--CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence 47899999999998876654 445569999997 6799999999999999999999999999999999999996 67
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
.|++|+.|+++ ++||+.+.+.+..+..+. ..+.++.+ ++.++++|+.|+.|++||+.+.+.+.++.+|...|.+
T Consensus 211 ~l~s~s~dg~i--~~wd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 211 RVVSGSRDATL--RVWDIETGQCLHVLMGHV--AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp EEEEEETTSEE--EEEESSSCCEEEEEECCS--SCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred EEEEEeCCCEE--EEEECCCCcEEEEEcCCc--ccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence 89999999995 789999888877766543 24567776 7889999999999999999998888889999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++| +++.+++++.|+.+ ++||+++++.+..+..+.. .+.++. ++++++++|+.|+.|++||+.+++.+..+.
T Consensus 285 ~~~--~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~~--~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSI--RVWDVETGNCIHTLTGHQS--LTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp EEE--CSSEEEEEETTSCE--EEEETTTCCEEEEECCCCS--CEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEE--CCCEEEEEeCCCeE--EEEECCCCCEEEEEcCCcc--cEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999 78899999999996 6899999888877765542 344444 467899999999999999999999998888
Q ss_pred c---cccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 242 G---HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 242 ~---h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
+ |...|.+++|+ +.+|++|+.|++|++|+...+...
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 7 88999999995 689999999999999998765533
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=259.03 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=197.8
Q ss_pred cccceeEEEEcCCCC-EEEEeeC---CCcEEEEeCCCceeeee-ecCCcCcEEEEEECCC---CCeEEEEeCCCceEEEE
Q psy4754 25 ILFGATSVDFSVSGR-LLFAGYN---DYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~-~l~tg~~---dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d---~~~l~sgs~D~~i~~~~ 96 (304)
|...|.+++|+|++. ++++|+. ||.|++||+.+++.... ..+|..+|.+++|+|+ +++|++|+.|+.+ ++
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i--~i 94 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL--HI 94 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE--EE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE--EE
Confidence 455699999999986 5567766 99999999988765543 3479999999999998 6999999999995 78
Q ss_pred eeeCCCe-eEeEEeccceeeceeee------EEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCccc----ceeEEE-
Q psy4754 97 FDLRADK-EVACYKKDSILFGATSV------DFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHEN----RVSCLQ- 163 (304)
Q Consensus 97 wd~~~~~-~~~~~~~~~~~~~~~~~------~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~----~v~~v~- 163 (304)
||+...+ .+..+..+.. .+.++ +|+++++++++++.|+.|++||+.+.. .+..+..|.. .+.+++
T Consensus 95 wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp ECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred EeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence 9998776 5555554332 35566 467899999999999999999998876 5666655544 788888
Q ss_pred ---EcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 164 ---VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 164 ---~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
|+|+++.+++++.|+.+ ++||+++.+........ ..+.+++|+| ++++|++|+.|+.|++||+.++..+
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDI--KLFDLRNMALRWETNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEE--EEEETTTTEEEEEEECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EeccCCCCCEEEEEccCCeE--EEEECccCceeeecCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 78899999999999986 69999988765443322 3578999999 9999999999999999998876665
Q ss_pred EEee-----ccccceEEEEEccCCC-EEEEeecCCeeeeccccccc
Q psy4754 238 NHLM-----GHENRVSCLQVSPDGT-AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 238 ~~~~-----~h~~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~~~ 277 (304)
..+. +|...|++++|+|++. +|++|+.|+.|++|+...+.
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 5444 8999999999999998 89999999999999987543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=288.67 Aligned_cols=141 Identities=12% Similarity=0.054 Sum_probs=117.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-----------eeecCCcCc
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----------NHLMGHENR 70 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-----------~~~~~h~~~ 70 (304)
.|++|++||+.+++++..+. +...|++++|+|++++|++|+.||+|++||+.+++.. ..+.+|.++
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVF---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEE---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred CcCeEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence 47899999999998877664 2345999999999999999999999999999887643 345789999
Q ss_pred EEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc----------------eeeceeeeEEcCCCCEEEEEe
Q psy4754 71 VSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----------------ILFGATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 71 V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~----------------~~~~~~~~~~s~~~~~l~sg~ 133 (304)
|.+++|+|+ +..|++|+.|++ + +||+.+.+.+..+..+. ....+.+++|+|++.+|++|+
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEccCCCCEEEEEeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 999999996 468999999998 5 89999988877665430 012478999999999999999
Q ss_pred CCCeEEEecCCcccc
Q psy4754 134 NDYTINVWDSLKCCR 148 (304)
Q Consensus 134 ~dg~i~iwd~~~~~~ 148 (304)
.|+.|++||+.+++.
T Consensus 231 ~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 231 EDNSLVFWDANSGHM 245 (902)
T ss_dssp TTCCEEEEETTTCCE
T ss_pred CCCeEEEEECCCCcE
Confidence 999999999876554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=258.01 Aligned_cols=258 Identities=12% Similarity=0.136 Sum_probs=210.7
Q ss_pred CCceeEEeeccccceE-eeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeC-CCceeeeeecC--CcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKEV-ACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDS-LKCCRVNHLMG--HENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~-~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~-~~~~~~~~~~~--h~~~V~~l~~ 76 (304)
.|++|++||+.+++.. .......+...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK 109 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence 4789999999988711 1111123445699999999999 9999999999999999 77654 66788 9999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCC---------CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-c
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRA---------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-C 146 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~ 146 (304)
+| ++.|++++.|+.+ ++||+.. .+.+..+.. ...+.++.|++++ +++++.|+.|++||+.+ .
T Consensus 110 ~~-~~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 110 YG-DDKLIAASWDGLI--EVIDPRNYGDGVIAVKNLNSNNTKV---KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp ET-TTEEEEEETTSEE--EEECHHHHTTBCEEEEESCSSSSSS---CCCEEEEEECSSE--EEEEESTTEEEEEESSCCT
T ss_pred CC-CCEEEEEcCCCeE--EEEcccccccccccccCCeeeEEee---CCceEEEEecCCc--EEEEeCCCeEEEEECCccc
Confidence 99 9999999999995 7899876 444433332 2246788999876 99999999999999987 4
Q ss_pred cc--ceeccCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCC------ceEEEeecCce-------eeeeeEEEE
Q psy4754 147 CR--VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD------KEVACYKKDSI-------LFGATSVDF 210 (304)
Q Consensus 147 ~~--~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~------~~~~~~~~~~~-------~~~~~~~~~ 210 (304)
.. ......|...|.+++|+| +++.+++++.|+.+ ++|+++.. +....+..+.. ...+.+++|
T Consensus 182 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV--AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE--EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE--EEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence 32 224457888999999999 99999999999996 57887665 55555554432 236789999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-ccceEEEEEccCCCEEEEeecCCe-eeecc
Q psy4754 211 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSGSWDTT-LRDEE 272 (304)
Q Consensus 211 s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~lasgs~D~~-i~~~~ 272 (304)
+|++++|++|+.|+.|++||+.+++.+..+.+| .++|.+++ |++.+|++|+.|++ .+.+.
T Consensus 260 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 999999999999999999999999999999998 99999999 99999999999999 76665
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=265.43 Aligned_cols=254 Identities=24% Similarity=0.355 Sum_probs=213.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .+...|.+++| ++.+|++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++
T Consensus 151 ~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 224 (435)
T 1p22_A 151 RDNTIKIWDKNTLECKRILT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NG 224 (435)
T ss_dssp SSSCEEEEESSSCCEEEEEC--CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TT
T ss_pred CCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CC
Confidence 47899999999998876654 34456899998 78899999999999999999999999999999999999997 45
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeE---eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
.|++|+.|+++ ++||+...... .....+ ...+.++.+ +++++++|+.|+.|++||+.+.+.+..+.+|...
T Consensus 225 ~l~s~s~dg~i--~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (435)
T 1p22_A 225 MMVTCSKDRSI--AVWDMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 298 (435)
T ss_dssp EEEEEETTSCE--EEEECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEeeCCCcE--EEEeCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence 99999999996 78999876654 222222 224566666 7889999999999999999999888899999999
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce---
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--- 235 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~--- 235 (304)
|.+++++ ++.+++|+.|+.+ ++||+++++.+..+..+. ..+.+++| ++.+|++|+.||.|++||+.++.
T Consensus 299 v~~~~~~--~~~l~~g~~dg~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 299 IACLQYR--DRLVVSGSSDNTI--RLWDIECGACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp EEEEEEE--TTEEEEEETTSCE--EEEETTTCCEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred EEEEEeC--CCEEEEEeCCCeE--EEEECCCCCEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 9999994 6799999999996 699999998888776554 35677777 88999999999999999987655
Q ss_pred ------eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 236 ------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 236 ------~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.+..+.+|.++|.+++| ++.+|++|+.|++|++|+...+.
T Consensus 371 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 78889999999999999 78899999999999999986644
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=295.83 Aligned_cols=247 Identities=27% Similarity=0.363 Sum_probs=218.8
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..|...|++++|+|+|+++++|+.||+|++||..+++.+..+.+|.++|.+++|+|++++|++|+.|++| ++||+.++
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v--~vwd~~~~ 689 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV--KIWDSATG 689 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTC
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeE--EEEECCCC
Confidence 3455569999999999999999999999999999999999999999999999999999999999999995 78999998
Q ss_pred eeEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 103 KEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+.+..+..+. ..+.++.|+| ++..+++|+.|+.|++||+.++..+..+.+|...|.+++|+|+++.+++++.|+++
T Consensus 690 ~~~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 690 KLVHTYDEHS--EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CEEEEEECCS--SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred ceEEEEcCCC--CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 8888776543 3578899999 55689999999999999999998888899999999999999999999999999996
Q ss_pred EEEEeeecCCceEEEeecC-----------------------------------------------------ceeeeeeE
Q psy4754 181 RCRLFDLRADKEVACYKKD-----------------------------------------------------SILFGATS 207 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~-----------------------------------------------------~~~~~~~~ 207 (304)
++||+++.+....+... .....+.+
T Consensus 768 --~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 768 --RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp --EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred --EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 68998776544332110 11134678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 208 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
++|+|+++++++++.|+.|++||..++..+..+.+|..+|.+++|+|+|..|++++.|++|++|+...
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=268.45 Aligned_cols=289 Identities=16% Similarity=0.171 Sum_probs=223.3
Q ss_pred CCceeEEeeccccceEeeeecccccc---ceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeee-c---CCcCcEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILF---GATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHL-M---GHENRVSC 73 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~---~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~-~---~h~~~V~~ 73 (304)
.|++|++||+.+++....+.. +.. .|++++|+|+ +++|++|+.||.|++||+.+++.+..+ . +|..+|.+
T Consensus 181 ~d~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp TTTEEEEEETTTBEEEEEECS--SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred CCCcEEEEeCCCcceeeeecc--cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 368999999999988766553 344 6999999999 999999999999999999999988888 6 89999999
Q ss_pred EEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc--eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 74 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 74 l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
++|+ ++++|++++.|+.+ ++||+.+.+.+..+..+. ....+..+.++ ++.++++++.|+.|++||+.+.+.+..
T Consensus 259 ~~~~-~~~~l~~~~~d~~i--~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~ 334 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATI--RVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKT 334 (615)
T ss_dssp EEES-SSSEEEEEETTSEE--EEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEE
T ss_pred EEEc-CCCEEEEEcCCCcE--EEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEE
Confidence 9999 99999999999995 789999888877766541 11234566665 888999999999999999988777777
Q ss_pred ccCcccceeEEEEcCC---------------------------------CcEEEEeecCCceEEEEeeecCCc-------
Q psy4754 152 LMGHENRVSCLQVSPD---------------------------------GTAFSSGSWDTTLRCRLFDLRADK------- 191 (304)
Q Consensus 152 ~~~h~~~v~~v~~sp~---------------------------------~~~las~s~d~~i~i~~~d~~~~~------- 191 (304)
+.+|...|.+++| |+ +..+++++.|+.+ ++||+.+.+
T Consensus 335 ~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i--~~~~~~~~~~~~~~~~ 411 (615)
T 1pgu_A 335 ISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL--KVNGITKHEFGSQPKV 411 (615)
T ss_dssp ECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEE--EETTEEEEECSSCEEE
T ss_pred EeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCE--EEEEcccCcccCCceE
Confidence 7666666655555 43 5566666666664 456543211
Q ss_pred --------------------------------------------------------eEEEe----------ecCceeeee
Q psy4754 192 --------------------------------------------------------EVACY----------KKDSILFGA 205 (304)
Q Consensus 192 --------------------------------------------------------~~~~~----------~~~~~~~~~ 205 (304)
.+..+ ........+
T Consensus 412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp EEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence 01110 011122357
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-cccceEEEEEcc----------CCCEEEEeecCCeeeecccc
Q psy4754 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSP----------DGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp----------~g~~lasgs~D~~i~~~~~~ 274 (304)
.+++|+|++++|++|+.|+.|++||+.+++.+..+.+ |...|++++|+| ++++|++|+.|++|++|+..
T Consensus 492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 492 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred EEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 8999999999999999999999999999999998888 999999999999 99999999999999999987
Q ss_pred ccchhheeeccccCCce-eEEEEEecCCc
Q psy4754 275 NRYMQYLLRSRITKPTQ-GLTVYFQDRGR 302 (304)
Q Consensus 275 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (304)
.+.... .....+.. =..+.|+|+++
T Consensus 572 ~~~~~~---~~~~~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 572 RPMKII---KALNAHKDGVNNLLWETPST 597 (615)
T ss_dssp CTTCCE---EETTSSTTCEEEEEEEETTE
T ss_pred CCceec---hhhhcCccceEEEEEcCCCC
Confidence 653111 11222333 34577777765
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=293.11 Aligned_cols=267 Identities=19% Similarity=0.251 Sum_probs=216.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC--C
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--D 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~--d 79 (304)
.|++|++||+.+++.+..+. .+...|.+++|+|+|++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| +
T Consensus 635 ~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 635 ADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp TTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCCEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC
Confidence 47899999999998876655 4455699999999999999999999999999999999999999999999999999 4
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee--------
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-------- 151 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------- 151 (304)
+.++++|+.|+++ ++||+.+++....+..+. ..+.++.|+|+++++++++.||.|++||+.+......
T Consensus 713 ~~~l~sg~~d~~v--~vwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 713 HLLLATGSNDFFL--KLWDLNQKECRNTMFGHT--NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp CCEEEEEETTSCE--EEEETTSSSEEEEECCCS--SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred ceEEEEEeCCCeE--EEEECCCcchhheecCCC--CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 5589999999995 789999888877665543 3578899999999999999999999999765432211
Q ss_pred -----------------------------------------------ccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 152 -----------------------------------------------LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 152 -----------------------------------------------~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
..+|...|.+++|+|+++.+++++.|+.+ ++
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v--~v 866 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV--EL 866 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCE--EE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeE--EE
Confidence 12678899999999999999999999996 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEE-----------------------------------
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW----------------------------------- 229 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iw----------------------------------- 229 (304)
||+.+.+.+..+..+. ..+.+++|+|+|+++++++.|+.|++|
T Consensus 867 wd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp EETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred EEcCCCceeeecCCCc--cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 9988776665554432 234555555555555555555555555
Q ss_pred --------------------------------------------eCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 230 --------------------------------------------DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 230 --------------------------------------------d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
|..++..+..+.+|...|.+++|+|+|++|++++.|
T Consensus 945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC
Confidence 444555666777899999999999999999999999
Q ss_pred Ceeeeccccccch
Q psy4754 266 TTLRDEESKNRYM 278 (304)
Q Consensus 266 ~~i~~~~~~~~~~ 278 (304)
++|++|+...+..
T Consensus 1025 g~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDY 1037 (1249)
T ss_dssp SBEEEEETTTTEE
T ss_pred CEEEEEECCCCce
Confidence 9999999876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=254.90 Aligned_cols=242 Identities=18% Similarity=0.242 Sum_probs=195.3
Q ss_pred ccccceeEEEEcCC---CCEEEEeeCCCcEEEEeCCC-ceee-eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee
Q psy4754 24 SILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLK-CCRV-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 24 ~~~~~i~~~~~~~~---g~~l~tg~~dg~v~iwd~~~-~~~~-~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd 98 (304)
.|...|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|+++ ++||
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v--~iwd 114 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA--KMWD 114 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE--EEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE--EEEE
Confidence 44556999999999 69999999999999999986 5444 6788899999999999999999999999995 7899
Q ss_pred eCCCeeEeEEeccceeeceeeeEE--cCCCCEEEEEeCCCeEEEecCCccccceeccCcc--------------------
Q psy4754 99 LRADKEVACYKKDSILFGATSVDF--SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-------------------- 156 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-------------------- 156 (304)
+.+.+........ ..+.++.| ++++.++++++.|+.|++||+++.+.+..+..|.
T Consensus 115 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 3mmy_A 115 LSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG 191 (368)
T ss_dssp TTTTEEEEEEECS---SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred cCCCCceeecccc---CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc
Confidence 9988776544322 24678888 8999999999999999999998876655544332
Q ss_pred ---------------------cceeEEEEcCCCcE----EEEeecCCceEEEEeeecCC---ceEEEeecCcee------
Q psy4754 157 ---------------------NRVSCLQVSPDGTA----FSSGSWDTTLRCRLFDLRAD---KEVACYKKDSIL------ 202 (304)
Q Consensus 157 ---------------------~~v~~v~~sp~~~~----las~s~d~~i~i~~~d~~~~---~~~~~~~~~~~~------ 202 (304)
..+.++.+.++... +++++.|+.+ ++||++.. +....+..+...
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV--AIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE--EEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE--EEEecCCCCccccceeeeeeecccccccc
Confidence 23344444443332 8999999986 58988775 334444443311
Q ss_pred ----eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 203 ----FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 203 ----~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
..+++++|+|++++|++|+.|+.|++||+.+++++..+.+|..+|.+++|+|+|++|+++|.|+..+.|+
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 1478999999999999999999999999999999999999999999999999999999999987665443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=246.67 Aligned_cols=259 Identities=19% Similarity=0.174 Sum_probs=210.3
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC-
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD- 102 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~- 102 (304)
.|...|++++| |++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+ ++|++...
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i--~~~~~~~~~ 92 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI--NGVPLFATS 92 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE--EEEETTCCT
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE--EEEEeeecC
Confidence 44556999999 999999999999999999999998888889999999999999999999999999996 67887643
Q ss_pred --eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEeecCCc
Q psy4754 103 --KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTT 179 (304)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~ 179 (304)
+.+..+..+. ..+.++.| +++++++++.|+.|++|| .......+..|..++.++++.| +++.+++++.|+.
T Consensus 93 ~~~~~~~~~~~~--~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 93 GEDPLYTLIGHQ--GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166 (313)
T ss_dssp TSCC-CEECCCS--SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred CCCcccchhhcc--cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC
Confidence 3344443332 24567777 578999999999999999 4556677889999999999988 8999999999999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEE
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 259 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 259 (304)
+ ++||.. +....+... ....+.+++|+|++. +++++.|+.|++||+.+++.+..+.+|..+|++++|+|++ .|
T Consensus 167 i--~i~d~~--~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 167 I--KLWQND--KVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp E--EEEETT--EEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred E--EEEecC--ceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 6 689943 344444431 124578999999999 8899999999999999999999999999999999999999 69
Q ss_pred EEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCc
Q psy4754 260 SSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGR 302 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (304)
++++.|+.|++|+...+.....+. .+.. -..+.+.|+++
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQVIT----LPAISIWSVDCMSNGD 279 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEEEEE----CSSSCEEEEEECTTSC
T ss_pred EEEecCCEEEEEECCCCceeEEEe----ccCceEEEEEEccCCC
Confidence 999999999999987764333332 2222 34566777665
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=262.81 Aligned_cols=263 Identities=13% Similarity=0.186 Sum_probs=201.1
Q ss_pred CCceeEEeeccccc-----------eEeeeeccccc----------cceeEEEEcCCC--CEEEEeeCCCcEEEEeCCCc
Q psy4754 2 GKNHCRLFDLRADK-----------EVACYKKDSIL----------FGATSVDFSVSG--RLLFAGYNDYTINVWDSLKC 58 (304)
Q Consensus 2 ~~~~v~~wd~~~~~-----------~~~~~~~~~~~----------~~i~~~~~~~~g--~~l~tg~~dg~v~iwd~~~~ 58 (304)
.|++|+|||+.+++ ....+..+... ..|++++|+|++ ..|++++.||+|++||+.++
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 37899999999876 23333322111 459999999998 79999999999999998764
Q ss_pred eee---------------------------------------ee-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee
Q psy4754 59 CRV---------------------------------------NH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 59 ~~~---------------------------------------~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd 98 (304)
... +. ..+|...|.+++|+|++++|++| .|+++ ++||
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i--~iwd 204 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRI--NLWH 204 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEE--EEEE
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeE--EEEE
Confidence 331 12 36799999999999999999998 79985 7899
Q ss_pred eCC-CeeEeEE-----eccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCcccc----ceeccCccc----------
Q psy4754 99 LRA-DKEVACY-----KKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCR----VNHLMGHEN---------- 157 (304)
Q Consensus 99 ~~~-~~~~~~~-----~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~---------- 157 (304)
+.. .+.+..+ ........+.+++|+|++ .++++|+.|+.|++||+++... +..+.+|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (447)
T 3dw8_B 205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284 (447)
T ss_dssp TTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHH
T ss_pred CCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccccccccc
Confidence 984 3333322 111222347899999998 9999999999999999988775 567777776
Q ss_pred --ceeEEEEcCCCcEEEEeecCCceEEEEeeecC-CceEEEeecCceee-------------eeeEEEEcCCCCEEEEEe
Q psy4754 158 --RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILF-------------GATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 158 --~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~-------------~~~~~~~s~~g~~l~sg~ 221 (304)
.|.+++|+|+++++++++. +.+ ++||++. .+.+..+..+.... .+..++|+|++++|++|+
T Consensus 285 ~~~v~~~~~s~~g~~l~~~~~-~~v--~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s 361 (447)
T 3dw8_B 285 ISSISDVKFSHSGRYMMTRDY-LSV--KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361 (447)
T ss_dssp TTCEEEEEECTTSSEEEEEES-SEE--EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred CceEEEEEECCCCCEEEEeeC-CeE--EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence 8999999999999999998 875 6999987 66666665443211 123489999999999999
Q ss_pred CCCcEEEEeCCCceeeEEeec---------------------------------cccceEEEEEccCCCEEEEeecCCee
Q psy4754 222 NDYTINVWDSLKCCRVNHLMG---------------------------------HENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~---------------------------------h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
.|+.|++||+.+++.+ .+.+ +...|.+++|+|++.+||+++.|+ +
T Consensus 362 ~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~ 439 (447)
T 3dw8_B 362 YNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-L 439 (447)
T ss_dssp STTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-E
T ss_pred cCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-e
Confidence 9999999999887655 3333 345789999999999999998876 6
Q ss_pred eecc
Q psy4754 269 RDEE 272 (304)
Q Consensus 269 ~~~~ 272 (304)
.+|.
T Consensus 440 ~~~~ 443 (447)
T 3dw8_B 440 YIFQ 443 (447)
T ss_dssp EEEE
T ss_pred eeec
Confidence 6663
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=256.56 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=201.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeee-
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDL- 99 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~- 99 (304)
|...|++++|+|++++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+++ +|++|+.|+.| ++||+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--~~wd~~ 87 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI--LKVDLI 87 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE--EEECSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE--EEEEec
Confidence 44559999999999999999999999999998765 3455668999999999999999 99999999995 78999
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc---------cccceeccCcccceeEEEEcCCCcE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK---------CCRVNHLMGHENRVSCLQVSPDGTA 170 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~v~~sp~~~~ 170 (304)
..... ..+........+.++.|+| +.++++++.|+.|++||+.+ .+.+..+. |...|.+++|+|++
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-- 162 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence 76654 3333300223578899999 99999999999999999887 66666555 88999999999987
Q ss_pred EEEeecCCceEEEEeeecC-CceEEEeecCceeeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCc------eeeEEeec
Q psy4754 171 FSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC------CRVNHLMG 242 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~------~~~~~~~~ 242 (304)
+++++.|+.+ ++||+++ ...............+.+++|+| +++++++++.|+.|++|+.... ..+..+.+
T Consensus 163 l~~~~~d~~i--~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 LIVGMNNSQV--QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEEEESTTEE--EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred EEEEeCCCeE--EEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 8999999986 6899987 44321111112224678999999 9999999999999999998776 67777888
Q ss_pred ccc---------ceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 243 HEN---------RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 243 h~~---------~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
|.. +|.+++|+|++++|++|+.|+.|++|+...+..
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 865 999999999999999999999999999876553
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=259.95 Aligned_cols=272 Identities=14% Similarity=0.138 Sum_probs=216.4
Q ss_pred cccceeEEEEcCC----CCEEEEeeCCCcEEEEeCCCceeeeeecC-----CcCcEEEEEECCC----CCeEEEEeCCCc
Q psy4754 25 ILFGATSVDFSVS----GRLLFAGYNDYTINVWDSLKCCRVNHLMG-----HENRVSCLQVSPD----GTAFSSGSWDTT 91 (304)
Q Consensus 25 ~~~~i~~~~~~~~----g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~d----~~~l~sgs~D~~ 91 (304)
|...|++++|+|+ ...+++++.++.|++||..+++.+..+.. |...|.+++|+|+ +++|++|+.|+.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 4456999999984 45666777777999999998776665543 5678999999999 669999999998
Q ss_pred eEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceec---cCcccceeEEEEcCC
Q psy4754 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPD 167 (304)
Q Consensus 92 i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~v~~sp~ 167 (304)
| ++||+.+.+.+..+..+. ..+.++.|+| ++.++++++.|+.|++||+.+.+.+..+ .+|...|.+++|+|+
T Consensus 97 i--~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 97 I--RIINPITMQCIKHYVGHG--NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp E--EEECTTTCCEEEEEESCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred E--EEEEchhceEeeeecCCC--CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 5 789999888887776443 3578999999 8999999999999999999988877776 689999999999999
Q ss_pred CcEEEEeecCCceEEEEeeecCCceEEEeec--------------------------CceeeeeeEEEEcCCCCEEEEEe
Q psy4754 168 GTAFSSGSWDTTLRCRLFDLRADKEVACYKK--------------------------DSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 168 ~~~las~s~d~~i~i~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
++.+++++.|+.+ ++||+++.+....+.. ......+.+++|+ +++|++++
T Consensus 173 ~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 173 GEKIMSCGMDHSL--KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp SSEEEEEETTSCE--EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCEEEEecCCCCE--EEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999996 6899987654322211 0022357888998 78999999
Q ss_pred CCCcEEEEeCCCce--------------eeEEeeccccceEEEEEccC--CCEEEEeecCCeeeeccccccchhheeecc
Q psy4754 222 NDYTINVWDSLKCC--------------RVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRDEESKNRYMQYLLRSR 285 (304)
Q Consensus 222 ~d~~i~iwd~~~~~--------------~~~~~~~h~~~i~~l~~sp~--g~~lasgs~D~~i~~~~~~~~~~~~~~~~~ 285 (304)
.|+.|++||+.+.. .+..+.+|...|++++|+|+ +++|++|+.|+.|++|+...+.........
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987653 37788899999999999999 999999999999999998776543322223
Q ss_pred ccCC--ce-eEEEEEecCCccC
Q psy4754 286 ITKP--TQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 286 ~~~~--~~-~~~~~~~~~~~~~ 304 (304)
...+ .. =..+.++|+++.|
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEE
T ss_pred EcccccCCceEEEEeCCCCCeE
Confidence 3333 22 3457778877643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=249.67 Aligned_cols=235 Identities=17% Similarity=0.191 Sum_probs=182.0
Q ss_pred eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC--eeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCe
Q psy4754 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYT 137 (304)
Q Consensus 62 ~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~--~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~ 137 (304)
..+.+|.++|.+++|+|+|++|+||+.|++| ++||+... +.+..+..+. ..+.+++|+++ +++|++|+.|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v--~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTI--KIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCE--EEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEE--EEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCCCE
Confidence 3467899999999999999999999999996 78998643 4445555443 35788999764 889999999999
Q ss_pred EEEecCCccc--cceeccCcccceeEEEEcCC--CcEEEEeecCCceEEEEeeecCCce--EEEeecCceeeeeeEEEEc
Q psy4754 138 INVWDSLKCC--RVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKE--VACYKKDSILFGATSVDFS 211 (304)
Q Consensus 138 i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~--~~~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s 211 (304)
|++||+.++. .+..+.+|...|.+++|+|+ +..+++++.|+++ ++||+++... ...+..+. ..+.+++|+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v--~~wd~~~~~~~~~~~~~~h~--~~v~~~~~~ 154 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV--SVVEFKENGTTSPIIIDAHA--IGVNSASWA 154 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE--EEEEBCSSSCBCCEEEECCS--SCEEEEEEC
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcE--EEEEecCCCceeeeeeeccc--CccceEeec
Confidence 9999987653 45567889999999999997 8899999999996 6899886532 22333332 457899999
Q ss_pred CC-------------CCEEEEEeCCCcEEEEeCCCce----eeEEeeccccceEEEEEccCC---CEEEEeecCCeeeec
Q psy4754 212 VS-------------GRLLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSPDG---TAFSSGSWDTTLRDE 271 (304)
Q Consensus 212 ~~-------------g~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g---~~lasgs~D~~i~~~ 271 (304)
|+ +++|++|+.|++|++||+.++. .+..+.+|..+|.+++|+|++ .+|||||.|++|++|
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 97 5799999999999999987654 566788999999999999985 899999999999999
Q ss_pred cccccchhheeecc-ccCCce-eEEEEEecCCccC
Q psy4754 272 ESKNRYMQYLLRSR-ITKPTQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 304 (304)
+.+....+...+.. ...... -..+.|+|+|+.|
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 269 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEE
Confidence 98654311111000 011122 3567888887654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=278.02 Aligned_cols=262 Identities=18% Similarity=0.250 Sum_probs=224.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.+++|+|||+.+++....+. .+...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|+++
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCEEEEEECCCCceEEEEe--cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 36899999999998776655 3445699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCC-eeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccCcc-cc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~-~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~ 158 (304)
+|++++.|+++ ++||+... .....+..+. ..+.++.|+| ++..+++++.|+.|++||+.+......+..+. ..
T Consensus 111 ~l~~~~~dg~i--~vw~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 111 YVLSGSDDLTV--KLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp EEEEEETTSEE--EEEEGGGTSEEEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred EEEEEcCCCEE--EEEECCCCceEEEEEcCCC--CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence 99999999996 68999876 4444444432 2467899999 88899999999999999998777666665544 88
Q ss_pred eeEEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 159 VSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 159 v~~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+.+++|+| ++..+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|+++++++++.|+.|++||..+++.
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i--~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTI--KIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEE--EEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEEEECCCCCEEEEEeCCCEE--EEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 99999999 99999999999985 689999888877776543 3578999999999999999999999999999999
Q ss_pred eEEeeccccceEEEEEccCCC--EEEEeecCCeeeecccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEESK 274 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~~ 274 (304)
+..+..|..+|.+++|+|+|. .+++++ |..+.+|+..
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 301 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcC
Confidence 999999999999999999987 455554 6667777653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=257.97 Aligned_cols=234 Identities=25% Similarity=0.341 Sum_probs=203.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
++++.| ++.+|++|+.||+|++||+.+++.+..+.+|.++|.+++|+|++ .|++|+.|+++ ++||+.+++.+..+
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i--~vwd~~~~~~~~~~ 199 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV--RVWDIKKGCCTHVF 199 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE--EEEETTTTEEEEEE
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE--EEEECCCCcEEEEE
Confidence 566666 56799999999999999999999999999999999999999987 99999999996 78999998888777
Q ss_pred eccceeeceeeeEEc--CCCCEEEEEeCCCeEEEecCCcccc-----------------------ceeccCcccceeEEE
Q psy4754 109 KKDSILFGATSVDFS--VSGRLLFAGYNDYTINVWDSLKCCR-----------------------VNHLMGHENRVSCLQ 163 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s--~~~~~l~sg~~dg~i~iwd~~~~~~-----------------------~~~~~~h~~~v~~v~ 163 (304)
..+. ..+.++.|+ +++.++++|+.|+.|++||+.+... +..+.+|...|.++
T Consensus 200 ~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 200 EGHN--STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV- 276 (464)
T ss_dssp CCCS--SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE-
T ss_pred CCCC--CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE-
Confidence 6543 246677777 5778999999999999999876542 33467888888877
Q ss_pred EcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc
Q psy4754 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243 (304)
Q Consensus 164 ~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 243 (304)
+|+++.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|
T Consensus 277 -~~~~~~l~~~~~d~~i--~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 351 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTL--IVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351 (464)
T ss_dssp -EEETTEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred -cCCCCEEEEEeCCCeE--EEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence 5678899999999996 699999988887776554 46789999999999999999999999999999999999999
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
...|.+++|+ +.+|++|+.|++|++|+.....
T Consensus 352 ~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 352 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 9999999997 5899999999999999987654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=255.78 Aligned_cols=258 Identities=20% Similarity=0.324 Sum_probs=220.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .+...|.+++|+ +..+++|+.||+|++||+.+++.+..+.+|..+|.+++| +++
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLY--GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp TTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred CCCeEEEEECCcCcEEEEEC--CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence 47899999999998776654 344568999985 578999999999999999999999999999999999999 688
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+.+ ++||+.+.+.+..+..+. ..+.++.| ++.++++++.|+.|++||+.+++.+..+.+|...+.+
T Consensus 251 ~l~~~~~dg~i--~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 324 (445)
T 2ovr_B 251 RVVSGAYDFMV--KVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 324 (445)
T ss_dssp CEEEEETTSCE--EEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred EEEEEcCCCEE--EEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence 99999999996 789999888887776443 24567777 7899999999999999999999888889999999998
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc-eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
+.++ ++.+++++.|+.+ ++||+++++.+..+.... ....+.+++|+ +++|++|+.||.|++||+.+++.+..+
T Consensus 325 ~~~~--~~~l~~~~~dg~i--~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 325 MELK--DNILVSGNADSTV--KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEE--TTEEEEEETTSCE--EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEe--CCEEEEEeCCCeE--EEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 8875 5699999999996 689999988877776421 23457888885 689999999999999999999888887
Q ss_pred -----eccccceEEEEEccCCCEEEEeecCCe----eeeccccccc
Q psy4754 241 -----MGHENRVSCLQVSPDGTAFSSGSWDTT----LRDEESKNRY 277 (304)
Q Consensus 241 -----~~h~~~i~~l~~sp~g~~lasgs~D~~----i~~~~~~~~~ 277 (304)
.+|.+.|++++|+|++..+|+|+.|++ |.+||.+.+.
T Consensus 399 ~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 399 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred eccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 478899999999999999999999998 9999887653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=253.47 Aligned_cols=255 Identities=13% Similarity=0.056 Sum_probs=201.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC---------Cceeeeeec-CCcCcE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---------KCCRVNHLM-GHENRV 71 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~---------~~~~~~~~~-~h~~~V 71 (304)
.|++|++||+.+++.+..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.++.+. +|.++|
T Consensus 56 ~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v 128 (343)
T 3lrv_A 56 EDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI 128 (343)
T ss_dssp ETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred CCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence 37899999999998876665 345788899988 9999999999999765 344344443 677899
Q ss_pred EEEEECC--CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 72 SCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 72 ~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
.+++|+| ++++|++|+.|+++ ++||+.+++......... ...+.+++|+|++.++++|+.|+.|++||+++++.+
T Consensus 129 ~~~~~~~~~~~~~l~s~s~dg~i--~~wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 129 IYMYGHNEVNTEYFIWADNRGTI--GFQSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp EEEECCC---CCEEEEEETTCCE--EEEESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred EEEEcCCCCCCCEEEEEeCCCcE--EEEECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 9999999 99999999999995 789999887765443321 224688999999999999999999999999988877
Q ss_pred -eeccC-cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeec---CceeeeeeEEEEcCCCCEEEEEeC-C
Q psy4754 150 -NHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYN-D 223 (304)
Q Consensus 150 -~~~~~-h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~sg~~-d 223 (304)
..+.+ |..+|.+++|+|+++++++++.+ + +++||+++.+.+..+.. +.......+++|+|+|++|++++. |
T Consensus 206 ~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 206 SSRFPVDEEAKIKEVKFADNGYWMVVECDQ-T--VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp CEECCCCTTSCEEEEEECTTSSEEEEEESS-B--EEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred ccEEeccCCCCEEEEEEeCCCCEEEEEeCC-e--EEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence 67777 99999999999999999999944 6 47999998776544332 111111146999999999999988 9
Q ss_pred CcEEEEeCCCceeeEEeeccccceEEEEEcc---CCCEEEEeecCCeeeeccc
Q psy4754 224 YTINVWDSLKCCRVNHLMGHENRVSCLQVSP---DGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp---~g~~lasgs~D~~i~~~~~ 273 (304)
+.|++|+..+....... .++.+++|+| +...+++++.|+.++++-.
T Consensus 283 ~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 283 NSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99999998655433222 6788899999 8999999999999998753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=259.70 Aligned_cols=246 Identities=20% Similarity=0.243 Sum_probs=205.1
Q ss_pred ccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCC----------ceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCc
Q psy4754 24 SILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLK----------CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTT 91 (304)
Q Consensus 24 ~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~----------~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~ 91 (304)
.+...|++++|+|+ +.+|++|+.||.|++||+.+ ...+..+.+|...|.+++|+|+++ +|++|+.|++
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 34455999999997 67999999999999999976 567778889999999999999988 9999999999
Q ss_pred eEEEEeeeCCCee-------EeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCcc---ccceeccCccccee
Q psy4754 92 LRCRLFDLRADKE-------VACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVS 160 (304)
Q Consensus 92 i~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~ 160 (304)
| ++||+..... ...+..+ ...+.++.|+| ++..|++++.|+.|++||+++. ..+..+..|...|.
T Consensus 206 i--~vwd~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 206 I--CLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp E--EEEETTSCCBGGGEEECSEEECCC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred E--EEEeCCCCCCCCceeccceeecCC--CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 5 7899976321 1222222 23478899999 6789999999999999999876 45666779999999
Q ss_pred EEEEcCCCc-EEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC----
Q psy4754 161 CLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK---- 233 (304)
Q Consensus 161 ~v~~sp~~~-~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~---- 233 (304)
+++|+|+++ .+++|+.|+.| ++||++.. +.+..+..+. ..+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v--~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTV--ALWDLRNLKLKLHSFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEE--EEEETTCTTSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred EEEeCCCCCCEEEEEeCCCeE--EEEeCCCCCCCeEEeecCC--CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999987 79999999996 69999873 4455555443 4679999999995 689999999999999876
Q ss_pred ----------ceeeEEeeccccceEEEEEccCCC-EEEEeecCCeeeeccccccc
Q psy4754 234 ----------CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 234 ----------~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~~~ 277 (304)
.+.+..+.+|...|.+++|+|++. +|++++.|+.|++|+.....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 356777888999999999999999 99999999999999986654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=280.04 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=205.0
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeeeecCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|++++|+|++++|++|+.||+|++||+. ++..+..+.+|.++|++++|+|+ +++|++|+.|++| ++||+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I--~vwd~ 84 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV--LIWKE 84 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE--EEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE--EEEEC
Confidence 445569999999999999999999999999987 56777888999999999999988 8999999999996 78999
Q ss_pred CCCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc--cceeccCcccceeEEEEcC-------
Q psy4754 100 RADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSP------- 166 (304)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp------- 166 (304)
..++ .+..+..+ ...+.++.|+|+ +..+++|+.||.|++||+.+.. ....+.+|...|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 85 ENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp ETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCCcccccccccCC--CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 8876 33333332 335789999999 9999999999999999988763 3345678999999999999
Q ss_pred ------CCcEEEEeecCCceEEEEeeecCCc----eEEEeecCceeeeeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q psy4754 167 ------DGTAFSSGSWDTTLRCRLFDLRADK----EVACYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 167 ------~~~~las~s~d~~i~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~~---g~~l~sg~~d~~i~iwd~~~ 233 (304)
++..+++|+.|++| ++||+++.. ....+..+. ..+.+++|+|+ ++++++|+.|+.|++||+.+
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I--~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLV--KIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----CGGGCCEEEEETTSCE--EEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccCCCCCEEEEEECCCeE--EEEeccCCcccceeeeeecCCC--CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 58899999999996 689998764 233333333 46899999999 99999999999999999877
Q ss_pred ce-----eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 234 CC-----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 234 ~~-----~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+. .+....+|...|++++|+|+|.+|++|+.|+.|++|+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 53 3334456889999999999999999999999999999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=257.84 Aligned_cols=241 Identities=13% Similarity=0.074 Sum_probs=198.4
Q ss_pred ceeEEEEcCCCCEE-EEeeCCCcEEEEeCC--Cceeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 28 GATSVDFSVSGRLL-FAGYNDYTINVWDSL--KCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 28 ~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~--~~~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.|.+++|+|++++| ++|+.||+|++||+. +++.+..+. .|...|.+++|+|++++|++|+.|+.+ ++|++...
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v--~~~~~~~~ 181 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV--YSIDINSI 181 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE--EEEETTSC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE--EEEecCCc
Confidence 48999999999986 899999999999998 787777775 567899999999999999999999985 78998765
Q ss_pred eeEe----EEeccceeeceeeeEEcCC---CCEEEEEeCCCeEEEecCCcccccee-ccCcccceeEEEEcCCCcEEEEe
Q psy4754 103 KEVA----CYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSG 174 (304)
Q Consensus 103 ~~~~----~~~~~~~~~~~~~~~~s~~---~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~ 174 (304)
.... .+..+ ...+.++.|+|+ ++++++|+.|+.|++||+.+...+.. +.+|...|.+++|+ ++++|+++
T Consensus 182 ~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 182 PEEKFTQEPILGH--VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp CCSSCCCCCSEEC--SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred ccccccceeeecc--cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 5432 22222 235788999999 99999999999999999988877766 56899999999999 99999999
Q ss_pred ecCCceEEEEeeecCCceEEEeecC-----------------------ceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q psy4754 175 SWDTTLRCRLFDLRADKEVACYKKD-----------------------SILFGATSVDFSVSGRLLFAGY-NDYTINVWD 230 (304)
Q Consensus 175 s~d~~i~i~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd 230 (304)
+.|++| ++||+++++.+..+... .....+..++|+|++++|++++ .|+.|++|+
T Consensus 259 ~~d~~v--~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 259 GGDDKI--FAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp ESSSEE--EEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred eCCCeE--EEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999986 69999998877766532 1123478899999999999998 899999999
Q ss_pred C--CCc---eeeEEeeccccceEEEEEccCCCEEEEeec------CCeeeecccccc
Q psy4754 231 S--LKC---CRVNHLMGHENRVSCLQVSPDGTAFSSGSW------DTTLRDEESKNR 276 (304)
Q Consensus 231 ~--~~~---~~~~~~~~h~~~i~~l~~sp~g~~lasgs~------D~~i~~~~~~~~ 276 (304)
+ .++ ..+..+.+| +.|.+++|+|++.+++.++. +..|++|.++..
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 9 555 677778888 89999999996555555554 556899976543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=263.82 Aligned_cols=246 Identities=14% Similarity=0.102 Sum_probs=211.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCc-EEEEEECC--CCCeEEEEeCCCceEEEEee
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENR-VSCLQVSP--DGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~-V~~l~~s~--d~~~l~sgs~D~~i~~~~wd 98 (304)
...|++++|+|+|++|++++ ++.|++||+.++ +....+.+|.+. |.+++|+| ++++|++|+.|+++ ++||
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v--~vw~ 94 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV--IVWG 94 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE--EEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE--EEEe
Confidence 34599999999999999998 889999999988 888899999999 99999999 99999999999995 7899
Q ss_pred eCCC--------eeEeEEeccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccceeccCcccceeEEEEcC
Q psy4754 99 LRAD--------KEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRVNHLMGHENRVSCLQVSP 166 (304)
Q Consensus 99 ~~~~--------~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp 166 (304)
+.++ .....+..+ ...+.+++|+|+++++++++.+ +.|.+|| ..+.+..+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVL--AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECC--SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred CCCCcccccccccccchhhcc--cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 9643 344444432 2357899999999999999988 7999999 4456778889999999999999
Q ss_pred CCc-EEEEeecCCceEEEEeeecCCceEEEeecCce-eeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCceeeEEe-e-
Q psy4754 167 DGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-LFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHL-M- 241 (304)
Q Consensus 167 ~~~-~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~~~~~~~~-~- 241 (304)
+++ .+++++.|+.+ ++||+++.+.+..+..+.. ...+.+++|+|+ +++|++++.|+.|++||+.+++.+..+ .
T Consensus 171 ~~~~~l~~~~~d~~v--~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSV--VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp SSSCEEEEEETTTEE--EEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCCcEEEEEeCCCcE--EEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence 998 89999999996 6899998888777765432 015789999999 999999999999999999999999888 6
Q ss_pred --ccccceEEEEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 242 --GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 242 --~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
+|..+|.+++|+ ++.+|++++.|+.|++|+...+.....
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 899999999999 999999999999999999876543333
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=255.87 Aligned_cols=242 Identities=19% Similarity=0.217 Sum_probs=199.6
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCce----eeeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
...++++|+.. ++++|+.||.|++|++.+.. .+..+.+|.+.|.+++|+| ++++|++|+.|++| ++||+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v--~vw~~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV--MVWEIPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEE--EEEECCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeE--EEEEccCC
Confidence 45688888875 44568999999999986542 3445778999999999999 89999999999995 78999876
Q ss_pred -------eeEeEEeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEE
Q psy4754 103 -------KEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 103 -------~~~~~~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~la 172 (304)
+.+..+..+. ..+.+++|+|++ .++++++.|+.|++||+.+++.+..+ .+|...|.+++|+|+++.|+
T Consensus 115 ~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHT--KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp CCSSCBCSCSEEEECCS--SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCccccCCceEEecCCC--CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 3444554433 357899999998 69999999999999999998888888 78999999999999999999
Q ss_pred EeecCCceEEEEeeecCCceEEEe-ecCceeeeeeEEEEcCCCCEEEEE---eCCCcEEEEeCCCcee-eEEe-eccccc
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACY-KKDSILFGATSVDFSVSGRLLFAG---YNDYTINVWDSLKCCR-VNHL-MGHENR 246 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~sg---~~d~~i~iwd~~~~~~-~~~~-~~h~~~ 246 (304)
+++.|+.+ ++||+++++.+..+ ..+.. ..+..++|+|++++|++| +.|+.|++||+.++.. +... ..|...
T Consensus 193 ~~~~d~~i--~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 269 (402)
T 2aq5_A 193 TSCRDKRV--RVIEPRKGTVVAEKDRPHEG-TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG 269 (402)
T ss_dssp EEETTSEE--EEEETTTTEEEEEEECSSCS-SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS
T ss_pred EEecCCcE--EEEeCCCCceeeeeccCCCC-CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc
Confidence 99999986 69999998887776 33321 236789999999999999 7899999999987554 3333 257788
Q ss_pred eEEEEEccCCCEEE-EeecCCeeeeccccccc
Q psy4754 247 VSCLQVSPDGTAFS-SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 247 i~~l~~sp~g~~la-sgs~D~~i~~~~~~~~~ 277 (304)
|.+++|+|++.+|+ +|+.|+.|++|+...+.
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 99999999999986 56689999999987654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=242.98 Aligned_cols=261 Identities=15% Similarity=0.196 Sum_probs=214.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
.|++|++||+.++++...+..+ ..+.+++|+|+|+++ ++++.|++|++||+.+++.+..+..|. .+.+++|+|++
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg 85 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVG---SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG 85 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEeecC---CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCC
Confidence 4789999999999887665533 238999999999876 688899999999999999888877655 89999999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEE-EEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
++|+ +++.|+.| ++||+.+.+.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+.+.+..+..| ..
T Consensus 86 ~~l~~~~~~~~~v--~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~ 159 (391)
T 1l0q_A 86 KQVYVTNMASSTL--SVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RS 159 (391)
T ss_dssp SEEEEEETTTTEE--EEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SS
T ss_pred CEEEEEECCCCEE--EEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CC
Confidence 9775 55566885 789999888777665443 35789999999987 67788999999999888777666655 46
Q ss_pred eeEEEEcCCCcEE-EEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe---CCCcEEEEeCCCc
Q psy4754 159 VSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDSLKC 234 (304)
Q Consensus 159 v~~v~~sp~~~~l-as~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~---~d~~i~iwd~~~~ 234 (304)
+.+++|+|+++.+ ++++.|+.+ ++||+++.+....+.... .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v--~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSI--SVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred cceEEECCCCCEEEEEeCCCCEE--EEEECCCCeEEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 7999999999877 577778885 689999888776665443 467899999999999887 6899999999999
Q ss_pred eeeEEeeccccceEEEEEccCCCEE-EEeecCCeeeeccccccch
Q psy4754 235 CRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~sp~g~~l-asgs~D~~i~~~~~~~~~~ 278 (304)
+.+..+..|. .+.+++|+|+|++| ++++.|+.|++|+...+..
T Consensus 235 ~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 235 KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 8888888765 57899999999877 6888999999999876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=251.48 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=175.5
Q ss_pred CCceeEEeeccccceEeee----ec---cccccceeEEEEcCCCCEEE--EeeCCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 2 GKNHCRLFDLRADKEVACY----KK---DSILFGATSVDFSVSGRLLF--AGYNDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~----~~---~~~~~~i~~~~~~~~g~~l~--tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
.+++||+|++.+.+....+ +. ......+.+++|+|||++++ +++.|++|+|||+.+++.+..+. |...|.
T Consensus 102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~ 180 (365)
T 4h5i_A 102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVK 180 (365)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceE
Confidence 3678999998876432111 11 11122378999999999875 45579999999999999888775 778899
Q ss_pred EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC----eEEEecCCcccc
Q psy4754 73 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY----TINVWDSLKCCR 148 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg----~i~iwd~~~~~~ 148 (304)
+++|+|||++|++++.|+. .+|+..+++.+...........+.+++|+|++.++++++.|+ .++.||+.....
T Consensus 181 ~v~fspdg~~l~s~s~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 181 DLHFSTDGKVVAYITGSSL---EVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp EEEECTTSSEEEEECSSCE---EEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred EEEEccCCceEEeccceeE---EEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 9999999999999997654 466666665554333222233467899999999999998877 688888754432
Q ss_pred ----ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe-ecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 149 ----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY-KKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 149 ----~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
...+.+|...|.+++|+||+++||+|+.|++| ++||+++++.+..+ ..+. ..|++++|+|||++||+|+.|
T Consensus 258 ~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V--~iwd~~~~~~~~~~~~gH~--~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 258 SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI--ALVKLKDLSMSKIFKQAHS--FAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE--EEEETTTTEEEEEETTSSS--SCEEEEEECTTSCEEEEEETT
T ss_pred cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE--EEEECCCCcEEEEecCccc--CCEEEEEECCCCCEEEEEeCC
Confidence 34567899999999999999999999999996 69999999887765 3343 468999999999999999999
Q ss_pred CcEEEEeCCC
Q psy4754 224 YTINVWDSLK 233 (304)
Q Consensus 224 ~~i~iwd~~~ 233 (304)
++|+|||++.
T Consensus 334 ~tvrvw~ip~ 343 (365)
T 4h5i_A 334 NTIHIIKLPL 343 (365)
T ss_dssp SEEEEEECCT
T ss_pred CeEEEEEcCC
Confidence 9999999864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=242.89 Aligned_cols=242 Identities=14% Similarity=0.038 Sum_probs=176.7
Q ss_pred CCceeEEeecccc---ceEeeeecccc-------cc----------------ceeEEEEcCC----CCEEEEeeCCCcEE
Q psy4754 2 GKNHCRLFDLRAD---KEVACYKKDSI-------LF----------------GATSVDFSVS----GRLLFAGYNDYTIN 51 (304)
Q Consensus 2 ~~~~v~~wd~~~~---~~~~~~~~~~~-------~~----------------~i~~~~~~~~----g~~l~tg~~dg~v~ 51 (304)
+..+|++|++.++ +++++++.+.. .. .|.+++|+|+ ++++++++.+ ++
T Consensus 61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~ 138 (356)
T 2w18_A 61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KA 138 (356)
T ss_dssp ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EE
T ss_pred ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EE
Confidence 4568999999999 77777766431 11 3567888888 8888887754 77
Q ss_pred EEeCCCceeeee-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC---CCC
Q psy4754 52 VWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGR 127 (304)
Q Consensus 52 iwd~~~~~~~~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~ 127 (304)
+|++.+++.+.+ ..+|+..|..++++|+|+.+.+- ..+. ..+..++|++ ++.
T Consensus 139 v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~----------------------~~~~--~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 139 VLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ----------------------FLMP--PEETILTFAEVQGMQE 194 (356)
T ss_dssp EEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE----------------------EECC--CSSCEEEEEEEETSTT
T ss_pred EEecCCCcEEEecccCCCCcEEEEEECCCCceeeee----------------------ccCC--CceeeEEeeccCCCCc
Confidence 788777776666 46677777777777777655431 1111 1235677888 789
Q ss_pred EEEEEeCCCeEEEecCCccccceeccCcc---cceeEEEEcCCCcEE------------EEeecCCceEEEEeeecCCce
Q psy4754 128 LLFAGYNDYTINVWDSLKCCRVNHLMGHE---NRVSCLQVSPDGTAF------------SSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 128 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~v~~sp~~~~l------------as~s~d~~i~i~~~d~~~~~~ 192 (304)
.+++++.|++|++||+.+++.+.++.+|. ..+.+++|+|+++.+ ++|+.|+++ ++||..+++.
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI--klWd~~tgk~ 272 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL--IVINPKTTLS 272 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE--EEEETTTTEE
T ss_pred eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE--EEEECCCCEE
Confidence 99999999999999999999998887654 367778999999876 667888886 6899998877
Q ss_pred EEEee---cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE-EEEEccCCCEEEEeecCCee
Q psy4754 193 VACYK---KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS-CLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 193 ~~~~~---~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~-~l~~sp~g~~lasgs~D~~i 268 (304)
+..+. .......+ +..+.++.++++|+.|++|+|||+.+++.+.++.+|...+. +++|||||++|+|||.|++|
T Consensus 273 l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEEEECCCTTCCCCE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEEeeccCCCccee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 65542 11111112 23333478899999999999999999999999999987655 68999999999999999999
Q ss_pred eeccc
Q psy4754 269 RDEES 273 (304)
Q Consensus 269 ~~~~~ 273 (304)
|+|++
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=252.69 Aligned_cols=239 Identities=13% Similarity=0.050 Sum_probs=199.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeec--------------------------------------
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLM-------------------------------------- 65 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~-------------------------------------- 65 (304)
+.+++++|+++|++|+++ .++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 457899999999977665 57899999998887 544443
Q ss_pred ----------------CCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeC--CCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 66 ----------------GHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLR--ADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 66 ----------------~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~--~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
+|.+.|.+++|+|++++| ++|+.|+++ ++||+. .++.+..+..+.....+.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSL--LVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEE--EEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeE--EEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 234479999999999996 899999995 789998 77777666533222357899999999
Q ss_pred CEEEEEeCCCeEEEecCCccccce----eccCcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCceEEEee-c
Q psy4754 127 RLLFAGYNDYTINVWDSLKCCRVN----HLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKEVACYK-K 198 (304)
Q Consensus 127 ~~l~sg~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~~~~~~-~ 198 (304)
++|++|+.++.|++|++.+..... .+.+|...|.+++|+|+ +++|++++.|++| ++||+++++.+..+. .
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i--~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI--KISHYPQCFIVDKWLFG 239 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE--EEEEESCTTCEEEECCC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE--EEEECCCCceeeeeecC
Confidence 999999999999999987765443 67889999999999999 9999999999996 689999888776633 3
Q ss_pred CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-------------------------ccceEEEEEc
Q psy4754 199 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------------------------ENRVSCLQVS 253 (304)
Q Consensus 199 ~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------------------------~~~i~~l~~s 253 (304)
+. ..+.+++|+ ++++|++|+.|++|++||+.+++.+..+..+ ...|.+++|+
T Consensus 240 h~--~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 240 HK--HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CS--SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CC--CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 32 467999999 9999999999999999999999888877633 3579999999
Q ss_pred cCCCEEEEee-cCCeeeeccc
Q psy4754 254 PDGTAFSSGS-WDTTLRDEES 273 (304)
Q Consensus 254 p~g~~lasgs-~D~~i~~~~~ 273 (304)
|++++|++++ .|+.|++|+.
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEe
Confidence 9999999999 8999999998
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=247.88 Aligned_cols=225 Identities=16% Similarity=0.232 Sum_probs=175.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcC--CCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s 77 (304)
.|++|||||+.+++.........|...|.+++|++ ++.+|++|+.|++|++||+.++ +....+.+|...|.+++|+
T Consensus 33 ~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~ 112 (316)
T 3bg1_A 33 SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112 (316)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEEC
T ss_pred CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEEC
Confidence 47899999999875433333344556699999986 4899999999999999999876 3566778999999999999
Q ss_pred CC--CCeEEEEeCCCceEEEEeeeCCCeeEeEE-eccceeeceeeeEEcCC-----------------CCEEEEEeCCCe
Q psy4754 78 PD--GTAFSSGSWDTTLRCRLFDLRADKEVACY-KKDSILFGATSVDFSVS-----------------GRLLFAGYNDYT 137 (304)
Q Consensus 78 ~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~~~-~~~~~~~~~~~~~~s~~-----------------~~~l~sg~~dg~ 137 (304)
|+ +++|++|+.|+++ ++||+......... ....+...+.++.|+|+ +.+|++|+.|+.
T Consensus 113 p~~~g~~lasgs~D~~i--~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~ 190 (316)
T 3bg1_A 113 PHDYGLILACGSSDGAI--SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190 (316)
T ss_dssp CTTTCSCEEEECSSSCE--EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB
T ss_pred CCCCCcEEEEEcCCCCE--EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCe
Confidence 98 7899999999996 78999765322111 11112234677888887 468999999999
Q ss_pred EEEecCCcc---ccceeccCcccceeEEEEcCCC----cEEEEeecCCceEEEEeeecCCc----eEEEeecCceeeeee
Q psy4754 138 INVWDSLKC---CRVNHLMGHENRVSCLQVSPDG----TAFSSGSWDTTLRCRLFDLRADK----EVACYKKDSILFGAT 206 (304)
Q Consensus 138 i~iwd~~~~---~~~~~~~~h~~~v~~v~~sp~~----~~las~s~d~~i~i~~~d~~~~~----~~~~~~~~~~~~~~~ 206 (304)
|++||+.+. ..+..+.+|...|.+++|+|++ +.|++++.|+++ ++|++++.. ....+..+ ...+.
T Consensus 191 v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v--~iw~~~~~~~~~~~~~~~~~~--~~~v~ 266 (316)
T 3bg1_A 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV--FIWTCDDASSNTWSPKLLHKF--NDVVW 266 (316)
T ss_dssp CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE--EEEECSSTTCCCCBCCEEEEC--SSCEE
T ss_pred EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE--EEEEccCccccchhhhhhhcC--CCcEE
Confidence 999998644 3566788999999999999986 789999999996 689987621 11112222 23578
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 207 SVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
+++|+|++++|++++.|++|++|+..
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999999999999999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=247.17 Aligned_cols=260 Identities=19% Similarity=0.227 Sum_probs=208.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
+.+++|++ ..+++++.||.|++||..+++....+.. |...|.+++|+|++++|++|+.|+.+ ++||+.+.+.+..
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i--~iwd~~~~~~~~~ 171 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLV--DIYDVESQTKLRT 171 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCE--EEEETTTCCEEEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeE--EEEECcCCeEEEE
Confidence 45577765 4477888999999999999987776655 88999999999999999999999995 7899998888877
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
+..+. ..+.++.| ++.++++|+.|+.|++||++. ...+..+.+|...|.+++|+|+++.|++++.|+.+ ++||
T Consensus 172 ~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v--~iwd 245 (401)
T 4aez_A 172 MAGHQ--ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV--QIWD 245 (401)
T ss_dssp ECCCS--SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEEE
T ss_pred ecCCC--CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE--EEcc
Confidence 76543 24667777 567999999999999999984 45567788999999999999999999999999996 6999
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCC-EEEEEe--CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEE--
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGY--NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS-- 261 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~--~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~las-- 261 (304)
+++.+.+..+..+. ..+.+++|+|++. ++++|+ .|+.|++||+.+++.+..+. |...|.+++|+|++..|++
T Consensus 246 ~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 246 ARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp TTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEe
Confidence 99888777665443 4578999999765 566654 69999999999998888775 6679999999999999999
Q ss_pred eecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 262 GSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 262 gs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
|+.|+.|++|+...+......+ ...+.. -..+.++|+++.
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~--~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEE--EECCSSCCCEEEECTTSSE
T ss_pred ecCCCcEEEEecCCccceeEEE--ecCCCCCEEEEEECCCCCE
Confidence 5589999999987643322221 122222 244666776653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=252.89 Aligned_cols=229 Identities=14% Similarity=0.062 Sum_probs=170.2
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCcee-----eeeecCCcCcEEEEEECC--------CCCeEEEEeCCCceEEEEeee
Q psy4754 33 DFSVSGRLLFAGYNDYTINVWDSLKCCR-----VNHLMGHENRVSCLQVSP--------DGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 33 ~~~~~g~~l~tg~~dg~v~iwd~~~~~~-----~~~~~~h~~~V~~l~~s~--------d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.+++++.+|++|+.|++|+|||..+++. +..+.+|.++|.+++|+| |+++|+|||.|+++ ++||+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv--~~Wd~ 173 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL--IIWRL 173 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE--EEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE--EEEEC
Confidence 3445667899999999999999887653 345789999999999997 88999999999995 79999
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCcccccee-------------------------cc
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNH-------------------------LM 153 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~-------------------------~~ 153 (304)
.+..++.....+. ..+.+++|+|++. +|++|+.|++|++||+++.+.... ..
T Consensus 174 ~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 174 TDEGPILAGYPLS--SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp ETTEEEEEEEECS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCceeeeecCCC--CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 8776665444332 2467899999875 799999999999999876543221 24
Q ss_pred CcccceeEEEEc-CCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee----------------eeeeEEEEcC--CC
Q psy4754 154 GHENRVSCLQVS-PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL----------------FGATSVDFSV--SG 214 (304)
Q Consensus 154 ~h~~~v~~v~~s-p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~s~--~g 214 (304)
+|...+.++.|+ ||++.+++++.|+++ ++||+...+....+..+... .......++| ++
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i--~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAW--LRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEE--EEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCE--EEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 678889999986 899999999999996 68998776543333211100 0011223443 34
Q ss_pred CEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 215 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 215 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.++++|+.|++|++||..+++.+..+.+|..+|.+|+|+|||++||+++.|+.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 56777889999999999999888888899999999999999999999997765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=249.03 Aligned_cols=232 Identities=24% Similarity=0.416 Sum_probs=201.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
...|.+++| +++++++|+.||+|++||..+++.+..+.+|.+.|.+++| ++++|++|+.|++| ++||+.+++.+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i--~vwd~~~~~~~ 206 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV--RVWDVNTGEML 206 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE--EEEESSSCCEE
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeE--EEEECCCCcEE
Confidence 344777776 7899999999999999999999999999999999999998 68899999999996 78999988887
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc---eeccCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV---NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
..+..+. ..+.++.|+ +..+++|+.|+.|++||+.+.... ..+.+|...|.+++| +++.+++|+.|+.+
T Consensus 207 ~~~~~h~--~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i-- 278 (435)
T 1p22_A 207 NTLIHHC--EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI-- 278 (435)
T ss_dssp EEECCCC--SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE--
T ss_pred EEEcCCC--CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE--
Confidence 7776543 246777776 469999999999999999877655 567899999999999 67899999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
++||+++++.+..+..+. ..+.++++ +++++++|+.|+.|++||+.+++.+..+.+|...|.+++| ++.+|++|
T Consensus 279 ~vwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEETTTCCEEEEEECCS--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred EEEECCcCcEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 689999998888776554 34677777 5789999999999999999999999999999999999999 78999999
Q ss_pred ecCCeeeeccccccc
Q psy4754 263 SWDTTLRDEESKNRY 277 (304)
Q Consensus 263 s~D~~i~~~~~~~~~ 277 (304)
+.|++|++|+...+.
T Consensus 353 ~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 353 AYDGKIKVWDLVAAL 367 (435)
T ss_dssp ETTSCEEEEEHHHHT
T ss_pred eCCCcEEEEECCCCC
Confidence 999999999986544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=255.55 Aligned_cols=233 Identities=9% Similarity=0.024 Sum_probs=182.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEE-----------------E----------EeCCCceeeeeec-CCcCcEEEEEEC
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTIN-----------------V----------WDSLKCCRVNHLM-GHENRVSCLQVS 77 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~-----------------i----------wd~~~~~~~~~~~-~h~~~V~~l~~s 77 (304)
...|.+++|+|||+++||++.|++|+ + |++.+++....+. .|.+.|.+++|+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS 94 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS 94 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC
T ss_pred hccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC
Confidence 45699999999999999999999995 1 1122222112222 567899999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce---eeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc------
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR------ 148 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~------ 148 (304)
|||+.|++++.|+++ ++||... .+..+. +.. ...+.+++|||||++||+|+.||+|++||+.++..
T Consensus 95 PdG~~LAs~s~dg~V--~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 95 PIDDWMAVLSNNGNV--SVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp SSSSCEEEEETTSCE--EEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred CCCCEEEEEeCCCcE--EEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 999999999999995 7899543 444333 221 12477999999999999999999999999887642
Q ss_pred -ceec----cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce---EEEee-cCceeeeeeEEEEcCCCCEEEE
Q psy4754 149 -VNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYK-KDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 149 -~~~~----~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~---~~~~~-~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+.++ .+|...|.+++|+||| +++++.|+++ ++||+.+.+. ...++ .+. ..|.+++|+ |++||+
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tV--rlWd~~~~~~~~~~~tL~~~h~--~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSV--FSMTVSASSHQPVSRMIQNASR--RKITDLKIV--DYKVVL 241 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCE--EEECCCSSSSCCCEEEEECCCS--SCCCCEEEE--TTEEEE
T ss_pred eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeE--EEEECCCCccccceeeeccccc--CcEEEEEEE--CCEEEE
Confidence 3454 6788999999999999 7888889996 6899987663 23342 222 357899999 689999
Q ss_pred EeCCCcEEEEeCCCceeeEEeeccccceEEEEE--ccCCCEEEEeecCCeeeeccc
Q psy4754 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV--SPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~--sp~g~~lasgs~D~~i~~~~~ 273 (304)
++ +++|++||..+++......+|.+.|..++| +||+..|+++++|++ |+|..
T Consensus 242 a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 87 699999999887764434489999999999 999999999999999 88865
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=265.46 Aligned_cols=239 Identities=11% Similarity=0.050 Sum_probs=196.3
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
+...|++++|+|++++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| +++|++++.|++| ++||+.+++.
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v--~lWd~~~~~~ 91 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTV--YVLSLYSQKV 91 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEE--EEEETTTCSE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeE--EEEECCCCcE
Confidence 3455999999999999999999999999999887765544 4788999999999 8899999999995 7899998888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-----------eeccCcccceeEEEEcCC-CcEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----------NHLMGHENRVSCLQVSPD-GTAFS 172 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~v~~sp~-~~~la 172 (304)
+..+... ..+.+++|+|+++++++|+.||.|++||+.+.... ..+.+|..+|.+++|+|+ +..++
T Consensus 92 ~~~~~~~---~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 92 LTTVFVP---GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEEEECS---SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred EEEEcCC---CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 7777533 24789999999999999999999999999876542 345789999999999996 47899
Q ss_pred EeecCCceEEEEeeecCCceEEEeecC----------------ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACYKKD----------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+|+.|++ + +||+++.+.+..+..+ .+...+++++|+|+|++|++|+.|++|++||+.++++
T Consensus 169 ~g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 169 ISYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 9999988 5 8999998877766543 0113589999999999999999999999999988876
Q ss_pred eEE--e---ec-------------cccceEEEEEc----cCC-CEEEEeecCC-----eeeeccc
Q psy4754 237 VNH--L---MG-------------HENRVSCLQVS----PDG-TAFSSGSWDT-----TLRDEES 273 (304)
Q Consensus 237 ~~~--~---~~-------------h~~~i~~l~~s----p~g-~~lasgs~D~-----~i~~~~~ 273 (304)
+.. + .+ |.++|++++|+ |++ ..|++|+.|. .+++|+.
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 643 2 12 35589999995 443 5788888773 6778774
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=237.57 Aligned_cols=247 Identities=13% Similarity=0.060 Sum_probs=181.9
Q ss_pred EeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEE
Q psy4754 8 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSG 86 (304)
Q Consensus 8 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sg 86 (304)
||++++.+.+.. ...+...|.+++|+|||++|++|+.+| +++||..+++...... ...+..+++.++++.+ ++|
T Consensus 3 i~s~~~~~~~~~--~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVP--ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCccc--cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEE
Confidence 566666654332 234455699999999999999998775 7899998876654432 2357788999988877 567
Q ss_pred eCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEc
Q psy4754 87 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVS 165 (304)
Q Consensus 87 s~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~s 165 (304)
+.|++ +++||..+++.+..+.... .+.++.++++. ++.+ .++.|++||+.+. +.+.++.. +...++++
T Consensus 78 ~~d~~--v~iWd~~~~~~~~~~~~~~---~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 78 GVKEV--VHIWDDVKKQDVSRIKVDA---PVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp SSTTE--EEEEETTTTEEEEEEECSS---CEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred CCccE--EEEEECCCCcEEEEEECCC---ceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 77887 4799999988887776433 46778887753 4444 3789999999877 55555544 44456677
Q ss_pred CCCcEEEE--eecCCceEEEEeeecCCc----------------eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc-E
Q psy4754 166 PDGTAFSS--GSWDTTLRCRLFDLRADK----------------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-I 226 (304)
Q Consensus 166 p~~~~las--~s~d~~i~i~~~d~~~~~----------------~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~-i 226 (304)
| ..++. |+.|+.+ ++||+++.+ .+..+..+. ..+++++|+|+|++|++|+.|++ |
T Consensus 147 ~--~~la~~sg~~~g~v--~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 147 N--GLLVYSNEFNLGQI--HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp T--TEEEEEESSCTTCE--EEEECCC------------------CCEEECCCS--SCEEEEEECTTSSEEEEEETTCSEE
T ss_pred c--cEEEEeCCCcCcEE--EEEECCCCCccccccccccccccCcccEEEEccC--CceEEEEECCCCCEEEEEeCCCCEE
Confidence 7 45555 6788885 689998754 134444443 46899999999999999999998 9
Q ss_pred EEEeCCCceeeEEee-c-cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 227 NVWDSLKCCRVNHLM-G-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 227 ~iwd~~~~~~~~~~~-~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
++||+.+++.+.++. + |.++|.+++|+|+|++|++++.|++|++|++..+
T Consensus 221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 221 RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999999999999998 6 9999999999999999999999999999998654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=238.39 Aligned_cols=238 Identities=17% Similarity=0.191 Sum_probs=185.6
Q ss_pred eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC--CeeEeEEeccceeeceeeeEEcCC--CCEEEEEeC
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA--DKEVACYKKDSILFGATSVDFSVS--GRLLFAGYN 134 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~--~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~ 134 (304)
+.+..+.+|.++|.+++|+|++++|++|+.|++| ++||+.. ...+..+..+ ...+.+++|+++ +.+|++++.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i--~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTI--KIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCE--EEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEET
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcE--EEEecCCCcceeeeEecCC--CCcEEEEEeCCCCCCCEEEEecc
Confidence 4566788999999999999999999999999996 6899873 3444444433 235788999877 899999999
Q ss_pred CCeEEEecCCccc--cceeccCcccceeEEEEcCC--CcEEEEeecCCceEEEEeeecCCceE--EEeecCceeeeeeEE
Q psy4754 135 DYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKEV--ACYKKDSILFGATSV 208 (304)
Q Consensus 135 dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~--~~~las~s~d~~i~i~~~d~~~~~~~--~~~~~~~~~~~~~~~ 208 (304)
|+.|++||+.+.+ .+..+.+|...|.+++|+|+ ++.+++++.|+.+ ++||++..... ..+..+ ...+.++
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i--~v~d~~~~~~~~~~~~~~~--~~~v~~~ 153 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV--SVVEFKENGTTSPIIIDAH--AIGVNSA 153 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE--EEEECCTTSCCCEEEEECC--TTCEEEE
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcE--EEEecCCCCceeeEEecCC--CCceEEE
Confidence 9999999988775 66677889999999999999 9999999999996 68999876432 223232 2467899
Q ss_pred EEcC-------------CCCEEEEEeCCCcEEEEeCCCce----eeEEeeccccceEEEEEccC---CCEEEEeecCCee
Q psy4754 209 DFSV-------------SGRLLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTL 268 (304)
Q Consensus 209 ~~s~-------------~g~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~---g~~lasgs~D~~i 268 (304)
+|+| ++.++++|+.|+.|++||+.++. .+..+.+|..+|.+++|+|+ +.+|++++.|+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 9999 69999999999999999986543 45678889999999999999 8999999999999
Q ss_pred eeccccccchhheee-ccccCCce-eEEEEEecCCccC
Q psy4754 269 RDEESKNRYMQYLLR-SRITKPTQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 269 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 304 (304)
++|+...+....... ........ -..+.++|+++.|
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 999987653221111 11111222 3567788877643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=236.32 Aligned_cols=260 Identities=13% Similarity=0.129 Sum_probs=213.6
Q ss_pred CceeEEeeccccceEeeeec---cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 3 KNHCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~---~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
+++|++||+.+++....... ..+...+.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence 56899999999987654332 133345899999999999999999999999999999888888889999999999999
Q ss_pred CCeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe--------CCCeEEEecCCccccce
Q psy4754 80 GTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY--------NDYTINVWDSLKCCRVN 150 (304)
Q Consensus 80 ~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~--------~dg~i~iwd~~~~~~~~ 150 (304)
++.++ +++.|+.+ ++||+.+.+.+..+.... .+..++|+|+++++++++ .|+.|++||+.+++.+.
T Consensus 223 ~~~l~~~~~~~~~i--~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 223 RDLVYCSNWISEDI--SVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp TTEEEEEETTTTEE--EEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCCcE--EEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 99875 55578885 789999887776655432 357899999999999887 58899999998776554
Q ss_pred eccCcccceeEEEEcCCCcE-EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC-------
Q psy4754 151 HLMGHENRVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------- 222 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~-las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~------- 222 (304)
. ..|...+.+++|+|+++. +++++.|+.+ ++||+.+++.+..+... ..+.+++|+|+|+++++++.
T Consensus 298 ~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v--~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 298 T-IGPPGNKRHIVSGNTENKIYVSDMCCSKI--EVYDLKEKKVQKSIPVF---DKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp E-EEEEECEEEEEECSSTTEEEEEETTTTEE--EEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred e-ccCCCCcceEEECCCCCEEEEEecCCCEE--EEEECCCCcEEEEecCC---CCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 4 456678999999999964 5677888885 68999988777666533 34689999999999888876
Q ss_pred --------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeec-CCeeeecccc
Q psy4754 223 --------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRDEESK 274 (304)
Q Consensus 223 --------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~-D~~i~~~~~~ 274 (304)
||.|++||..+++.+..+.. ...+.+++|+|+|++|++++. |++|++|+.+
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 56999999999988888776 457899999999999988775 9999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=237.42 Aligned_cols=259 Identities=19% Similarity=0.254 Sum_probs=204.7
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
++.|+|+++ .+||+| .|++|+|||..+++..+.+. +|.+.|++|+|+|+|++|++|+.|++| ++||+.+++.+.
T Consensus 108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v--~iWd~~~~~~~~ 183 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV--QLWDVQQQKRLR 183 (420)
T ss_dssp CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEE
T ss_pred ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeE--EEEEcCCCcEEE
Confidence 577999976 477766 59999999999998776654 678899999999999999999999995 789999998888
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEe
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~ 185 (304)
.+..+.. .+.+ ++.++..+++|+.|+.+++||..... .+..+.+|...+..+.++|+++.+++++.|+.+ ++|
T Consensus 184 ~~~~h~~--~v~~--~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v--~i~ 257 (420)
T 4gga_A 184 NMTSHSA--RVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV--NVW 257 (420)
T ss_dssp EECCCSS--CEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEE
T ss_pred EEeCCCC--ceEE--EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc--eEE
Confidence 7766543 2334 45567899999999999999987643 456678999999999999999999999999996 689
Q ss_pred eecCCce----EEEeecCceeeeeeEEEEcCCCC-EEEE--EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCE
Q psy4754 186 DLRADKE----VACYKKDSILFGATSVDFSVSGR-LLFA--GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 258 (304)
Q Consensus 186 d~~~~~~----~~~~~~~~~~~~~~~~~~s~~g~-~l~s--g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 258 (304)
+...++. +.....+ ...+.+++|+|.+. ++++ |+.|++|++||+.++..+..+..| ..+.++.|+|++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp ESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred eeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 9876542 2222222 24578999999765 5554 457999999999999988888755 57899999999999
Q ss_pred EEEee--cCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 259 FSSGS--WDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 259 lasgs--~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
+++++ .|++|++|++..+.+...+ ..+... ..|.|+|+|+.|
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATV 379 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEE
Confidence 88765 7999999998765543333 334444 457889988754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=239.57 Aligned_cols=232 Identities=11% Similarity=0.014 Sum_probs=182.4
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC---------CCe
Q psy4754 33 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR---------ADK 103 (304)
Q Consensus 33 ~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~---------~~~ 103 (304)
.+.+++.++++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+++ ++|+.. ..+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i--~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRL--LLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEE--EEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeE--EEEEccCceEEeecCCcc
Confidence 344678899999999999999999988877765 567888899987 9999999996 567654 333
Q ss_pred eEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceec-cCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 104 EVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
.+...... ....+.++.|+| +++++++++.|+.|++||+.+++.+... ..|...|.+++|+|+++++++|+.|+.|
T Consensus 116 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 116 VLREIEVD-SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEEECC-CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred eeEEeecC-CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 33333211 112478899999 9999999999999999999988775554 3455689999999999999999999996
Q ss_pred EEEEeeecCCceE-EEeec-CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec---cccceE--EEEEc
Q psy4754 181 RCRLFDLRADKEV-ACYKK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVS--CLQVS 253 (304)
Q Consensus 181 ~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~---h~~~i~--~l~~s 253 (304)
++||+++.+.. ..+.. +. ..+++++|+|+|.+|++++++ .|++||+.+...+..+.. |...+. +++|+
T Consensus 195 --~iwd~~~~~~~~~~~~~~h~--~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 195 --DVYNLSSPDQASSRFPVDEE--AKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp --EEEESSCTTSCCEECCCCTT--SCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred --EEEECCCCCCCccEEeccCC--CCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 69999998876 56655 33 468999999999999999955 999999988766554443 444444 69999
Q ss_pred cCCCEEEEeec-CCeeeeccccccc
Q psy4754 254 PDGTAFSSGSW-DTTLRDEESKNRY 277 (304)
Q Consensus 254 p~g~~lasgs~-D~~i~~~~~~~~~ 277 (304)
|+|++|++++. |+.|++|++....
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCCCEEEEecCCCCcEEEEEEcccc
Confidence 99999999998 9999999875543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=232.54 Aligned_cols=254 Identities=13% Similarity=0.142 Sum_probs=195.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
++.+++||+.+.++...... .++..+++.++++.+ ++|+.|++|++||..+++.+..+. |..+|.+++|+++.
T Consensus 39 ~~~~~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~- 112 (355)
T 3vu4_A 39 LKSFEIYNVHPVAHIMSQEM----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF- 112 (355)
T ss_dssp SSEEEEEEETTEEEEEEEEC----SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-
T ss_pred CCEEEEEecCCcceeeeeec----CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-
Confidence 56689999998876544321 257888999888876 578889999999999999888776 67799999999764
Q ss_pred eEEEEeCCCceEEEEeeeCCC-eeEeEEeccceeeceeeeEEcCCCCEEEE--EeCCCeEEEecCCccc-----------
Q psy4754 82 AFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFA--GYNDYTINVWDSLKCC----------- 147 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--g~~dg~i~iwd~~~~~----------- 147 (304)
++.+ .|+. +++||+... +.+..+.. ....+.+++ .+++. |+.+|.|++||+.+..
T Consensus 113 -~~~~-~~~~--i~i~d~~~~~~~~~~~~~-----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 113 -IVVS-YGDV--ISVFKFGNPWKRITDDIR-----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp -EEEE-ETTE--EEEEESSTTCCBSSCCEE-----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred -EEEE-EcCE--EEEEECCCCceeeEEecc-----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 4444 3666 479999877 55544333 112345666 55555 5889999999998754
Q ss_pred -----cceeccCcccceeEEEEcCCCcEEEEeecCCc-eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 148 -----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT-LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 148 -----~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~-i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
.+..+.+|..+|.+++|+|++++|++|+.|++ + ++||+++++.+..+....+...+.+++|+|+|++|++++
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v--~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII--RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE--EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE--EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 16678899999999999999999999999998 6 699999999888886321224689999999999999999
Q ss_pred CCCcEEEEeCCCcee--eEEee---------------------ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 222 NDYTINVWDSLKCCR--VNHLM---------------------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~--~~~~~---------------------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.|++|++||+.++.. ...+. .+..+...++|+|||+.|++++.|+.+++|+...
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 999999999865421 11111 1122347799999999999999999999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-31 Score=225.68 Aligned_cols=261 Identities=18% Similarity=0.204 Sum_probs=203.5
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
.++|+||+++ +||+| .|++|+|||+.+++.++.+. +|...|.+++|+|++++|++|+.|+++ ++||+.+++.+.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v--~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV--QLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEE--EEEETTTTEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcE--EEeecCCceeEE
Confidence 5789999886 66665 59999999999998877664 678899999999999999999999995 789999999888
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEe
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~ 185 (304)
.++.+.. ....+++++..+++++.++.+++|+.... ..+..+.+|...+..+.++++++.+++++.|+++ ++|
T Consensus 104 ~~~~h~~----~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i--~iw 177 (318)
T 4ggc_A 104 NMTSHSA----RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV--NVW 177 (318)
T ss_dssp EEECCSS----CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEE
T ss_pred EecCccc----eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcce--eEE
Confidence 7766543 23446677889999999999999997764 3456678999999999999999999999999996 689
Q ss_pred eecCCceEEE--eecCceeeeeeEEEEcCCCCEE---EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 186 DLRADKEVAC--YKKDSILFGATSVDFSVSGRLL---FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 186 d~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l---~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
|+++++.... .........+..++++|++..+ ++++.+++|++||.......... .|...+..+.|+|++..++
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceE
Confidence 9987653211 1111122356888899887643 45678899999999887665544 5778899999999999887
Q ss_pred Eee--cCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 261 SGS--WDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 261 sgs--~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
+++ .|++|++|+.+.+.+...+ ..+... ..+.|+|+|+.|
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l 299 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATV 299 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEE
Confidence 655 8999999998776544333 234444 457888887654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=230.12 Aligned_cols=231 Identities=16% Similarity=0.240 Sum_probs=183.3
Q ss_pred CCceeEEeeccccceEeee--eccccccceeEEEEcC--CCCEEEEeeCCCcEEEEeCCCc---------eeeeeecCCc
Q psy4754 2 GKNHCRLFDLRADKEVACY--KKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKC---------CRVNHLMGHE 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~--~~~~~~~~i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~~---------~~~~~~~~h~ 68 (304)
.|++|++||+.++...... ....+...|++++|+| ++.+|++|+.||+|++||+.++ +.+..+.+|.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 3789999999987432111 2223455699999999 6999999999999999999876 5577788999
Q ss_pred CcEEEEEECCC--CCeEEEEeCCCceEEEEeeeCCCeeEeEEec-----------cceeeceeeeEEcCC---CCEEEEE
Q psy4754 69 NRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKEVACYKK-----------DSILFGATSVDFSVS---GRLLFAG 132 (304)
Q Consensus 69 ~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-----------~~~~~~~~~~~~s~~---~~~l~sg 132 (304)
..|.+++|+|+ +++|++++.|+.+ ++||+.+.+.+..+.. ......+.++.|+|+ +.+++++
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGIL--RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEE--EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcE--EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 99999999999 9999999999995 7899987654432221 112234678899997 8999999
Q ss_pred eCCCeEEEecCCcccc--ceeccCcccceeEEEEcCCC----cEEEEeecCCceEEEEeeecCC----------------
Q psy4754 133 YNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDG----TAFSSGSWDTTLRCRLFDLRAD---------------- 190 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~----~~las~s~d~~i~i~~~d~~~~---------------- 190 (304)
+.++.+.+|+...... +..+.+|...|.+++|+|++ +.|++++.|+.| ++||++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~ 266 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI--RIFKITEKLSPLASEESLTNSNMF 266 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE--EEEEEEECC---------------
T ss_pred cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE--EEEeCCCCcCccccCCcccceecc
Confidence 9999998888766543 66778999999999999998 899999999996 68998764
Q ss_pred ------------------------------ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 191 ------------------------------KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 191 ------------------------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
+.+..+..+. ..+++++|+|++++|++|+.|+.|++||+.++..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ------------------------CCSEEEEEEEEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 2333333332 368999999999999999999999999998765444
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=230.30 Aligned_cols=260 Identities=18% Similarity=0.233 Sum_probs=179.7
Q ss_pred CCceeEEeeccccceEeeeec-----------cccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC
Q psy4754 2 GKNHCRLFDLRADKEVACYKK-----------DSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~-----------~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~ 69 (304)
.|++|++||+.+++....+.. ..+...|.+++|+| ++.+|++++.||.|++||+.+++....+. +..
T Consensus 64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~ 142 (408)
T 4a11_B 64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEE 142 (408)
T ss_dssp TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCC
Confidence 378899999999865433321 12455699999999 77899999999999999999988877665 778
Q ss_pred cEEEEEECCCC---CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCc
Q psy4754 70 RVSCLQVSPDG---TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 70 ~V~~l~~s~d~---~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~ 145 (304)
.+.++.+++.+ .++++++.|+.+ ++||+...+.+..+..+. ..+.+++|+|++. .+++++.|+.|++||+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 143 TVYSHHMSPVSTKHCLVAVGTRGPKV--QLCDLKSGSCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp CEEEEEECSSCSSCCEEEEEESSSSE--EEEESSSSCCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred ceeeeEeecCCCCCcEEEEEcCCCeE--EEEeCCCcceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 89999999854 499999999995 789999887777665443 3578999999998 588999999999999876
Q ss_pred cc-cceec---------------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce-----------------
Q psy4754 146 CC-RVNHL---------------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE----------------- 192 (304)
Q Consensus 146 ~~-~~~~~---------------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~----------------- 192 (304)
.. .+..+ .+|...|.+++|+|+++.+++++.|+.+ ++||+++.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i--~vwd~~~~~~~~~~~~~~~~~~~~~~~ 296 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM--RLWNSSNGENTLVNYGKVCNNSKKGLK 296 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTCCBCCCCCCCCCCCCSSCCC
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE--EEEECCCCccceeccccccccccccce
Confidence 54 22222 5789999999999999999999999996 6899876432
Q ss_pred ------------------------------EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec
Q psy4754 193 ------------------------------VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 193 ------------------------------~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
+..+..+ ...+.+++|+|++++|++|+.||.|++||+.+.+.+.....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 297 FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp CEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred eEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 2222222 23578999999999999999999999999998877665443
Q ss_pred cccceEEEEEcc-CCCEEEEeecCCeeeeccc
Q psy4754 243 HENRVSCLQVSP-DGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 243 h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~ 273 (304)
+.. ...+.| +...+.+.+.|+.+++|+.
T Consensus 375 ~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 375 TTT---KSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp --------------------------------
T ss_pred eEe---ccccccccceeecccCccCceeecCC
Confidence 332 233444 4455667778999999964
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=245.19 Aligned_cols=259 Identities=11% Similarity=0.073 Sum_probs=187.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC-----cEEEEEECCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-----RVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~-----~V~~l~~s~d 79 (304)
++++|++.+++....+.. .+...|.+++|+|+|+.||+++.||+|++||... .+..+. |.. .|.+++||||
T Consensus 65 ~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPD 140 (588)
T 2j04_A 65 FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPI 140 (588)
T ss_dssp CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSS
T ss_pred CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCC
Confidence 445555554432212221 2244599999999999999999999999999644 555566 665 4999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCee-------EeEEecc--ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKE-------VACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV- 149 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~-------~~~~~~~--~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~- 149 (304)
|++|++|+.|++| ++||+..+.. +..++.+ .+...+.+++|+|++ +++++.|++|++||+.+....
T Consensus 141 G~~LAsgs~DGtV--kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 141 ESSIVVGNEDGEL--QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp SSCEEEEETTSEE--EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC
T ss_pred CCEEEEEcCCCEE--EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc
Confidence 9999999999996 7899987642 3444211 122357899999999 888899999999998776632
Q ss_pred --eec-cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEE--cCCCCEEEEEeCCC
Q psy4754 150 --NHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF--SVSGRLLFAGYNDY 224 (304)
Q Consensus 150 --~~~-~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~l~sg~~d~ 224 (304)
.++ .+|...|.+++|+ ++.+|+++ +++| ++||+.+.+....... +...+..++| +|++..|+++++||
T Consensus 217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tI--kLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYV--HKIDLKNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEE--EEEETTTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred ceeeecccccCcEEEEEEE--CCEEEEEe-CCeE--EEEECCCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 345 4788999999999 58899887 6775 6999987665322212 2346789999 99999999999999
Q ss_pred cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEE-EEEecCCcc
Q psy4754 225 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLT-VYFQDRGRS 303 (304)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 303 (304)
+ ++|... .++|+||+..+++. |+++++|+...+. .+ ..+. .+.+. ++|+|+|+.
T Consensus 290 ~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~----~~~~-~~~I~~va~SPdG~~ 344 (588)
T 2j04_A 290 Y-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FN----NYET-TLVIHGISLSPDGYS 344 (588)
T ss_dssp E-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SS----SSCC-EEEEEEEEECTTSSE
T ss_pred C-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCc-ee----eecc-ceEEEEEEECCCCCE
Confidence 9 999865 15588888777775 8888888653222 11 1111 33444 777888764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-30 Score=228.46 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=206.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-----eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-----HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-----~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.+.+++|+|++.++++++.|++|++||+.+++..+ .+.+|.+.|.+++|+++++++++++.|+.+ ++||+.+.
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v--~~~d~~~~ 201 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV--HVFDLKTL 201 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE--EEEETTTC
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE--EEEECCCc
Confidence 36789999988888999999999999999887776 456899999999999999999999999985 78999988
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-----
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW----- 176 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~----- 176 (304)
+.+..+..+. ..+.+++|+|+++.+++ ++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++.
T Consensus 202 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 202 AYKATVDLTG--KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp CEEEEEECSS--SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTT
T ss_pred eEEEEEcCCC--CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCcc
Confidence 7777665432 24678999999998865 457999999999887776666554 56999999999999988884
Q ss_pred ---CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 177 ---DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 177 ---d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
|+.+ ++||+++++.+...... ..+..++|+|+++.+ ++++.++.|++||..+++.+..+. +...+.+++|
T Consensus 279 ~~~dg~i--~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 279 ESGGGRL--GIYSMDKEKLIDTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp CSCCEEE--EEEETTTTEEEEEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred ccCCCeE--EEEECCCCcEEeeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 6664 68999888766554322 246789999999754 667889999999999888777765 7788999999
Q ss_pred ccCCCEEEEeec---------------CCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 253 SPDGTAFSSGSW---------------DTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 253 sp~g~~lasgs~---------------D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+|+|++|++++. |+.|++|+...+........ ......+.++|+|+.
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA----GNQPTGLDVSPDNRY 414 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSCE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC----CCCCceEEEcCCCCE
Confidence 999999888876 56999999866543333322 223456677777654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=253.19 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=181.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCC--CCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s 77 (304)
.|++|++||+.++..........+...|++++|+|+ +.+|++|+.||+|++||+.+++ .+..+.+|..+|.+++|+
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s 108 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 108 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC
Confidence 478999999985433222233445566999999988 9999999999999999998876 677788999999999999
Q ss_pred CC--CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-------------CCCEEEEEeCCCeEEEec
Q psy4754 78 PD--GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-------------SGRLLFAGYNDYTINVWD 142 (304)
Q Consensus 78 ~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-------------~~~~l~sg~~dg~i~iwd 142 (304)
|+ ++.+++|+.|+++ ++||+.................+.++.|+| ++.++++|+.||.|++||
T Consensus 109 p~~~~~~l~sgs~dg~I--~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd 186 (753)
T 3jro_A 109 PHEYGPLLLVASSDGKV--SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186 (753)
T ss_dssp CGGGCSEEEEEETTSEE--EEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEE
T ss_pred CCCCCCEEEEEeCCCcE--EEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEe
Confidence 99 9999999999995 789998763322222222233578899999 588999999999999999
Q ss_pred CCcc----ccceeccCcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCceE---EEeecCceeeeeeEEEEcC
Q psy4754 143 SLKC----CRVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKEV---ACYKKDSILFGATSVDFSV 212 (304)
Q Consensus 143 ~~~~----~~~~~~~~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s~ 212 (304)
+++. .....+.+|..+|.+++|+|+ ++.+++++.|+.+ ++||+++.+.. ...........+++++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I--~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 264 (753)
T 3jro_A 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC--IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (753)
T ss_dssp EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE--EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT
T ss_pred ccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE--EEecCCCCCCcceeEEeccCCCCCceEEEEEcC
Confidence 8765 345567899999999999999 8999999999996 68999876421 1111122234578999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q psy4754 213 SGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~ 233 (304)
+|+++++|+.||.|++|++..
T Consensus 265 dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 265 SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEcCCCEEEEEecCC
Confidence 999999999999999999763
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=224.38 Aligned_cols=241 Identities=16% Similarity=0.221 Sum_probs=186.3
Q ss_pred EeCCCceeeeeecCCcCcEEEEEECCC---CCeEEEEeCCCceEEEEeeeCC-CeeE-eEEeccceeeceeeeEEcCCCC
Q psy4754 53 WDSLKCCRVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRA-DKEV-ACYKKDSILFGATSVDFSVSGR 127 (304)
Q Consensus 53 wd~~~~~~~~~~~~h~~~V~~l~~s~d---~~~l~sgs~D~~i~~~~wd~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~ 127 (304)
|+....+.+..+.+|.+.|.+++|+|+ |++|++|+.|+.+ ++||+.. ...+ ..+..+ ...+.++.|+|+++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i--~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDV--RCWEVQDSGQTIPKAQQMH--TGPVLDVCWSDDGS 99 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEE--EEEEECTTSCEEEEEEEEC--SSCEEEEEECTTSS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcE--EEEEcCCCCceeEEEeccc--cCCEEEEEECcCCC
Confidence 445566677778999999999999999 5999999999995 7899986 4433 334433 23578999999999
Q ss_pred EEEEEeCCCeEEEecCCccccceeccCcccceeEEEE--cCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce----
Q psy4754 128 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV--SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---- 201 (304)
Q Consensus 128 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~--sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~---- 201 (304)
++++++.|+.|++||+.+.+.+. +.+|...|.+++| +|+++.+++++.|+.+ ++||+++.+.+..+..+..
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i--~vwd~~~~~~~~~~~~~~~~~~~ 176 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL--KFWDTRSSNPMMVLQLPERCYCA 176 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEE--EEECSSCSSCSEEEECSSCEEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcE--EEEECCCCcEEEEEecCCCceEE
Confidence 99999999999999998876554 5779999999999 9999999999999996 6899988766554432210
Q ss_pred -----------------------------------eeeeeEEEEcCCCCE----EEEEeCCCcEEEEeCCCc---eeeEE
Q psy4754 202 -----------------------------------LFGATSVDFSVSGRL----LFAGYNDYTINVWDSLKC---CRVNH 239 (304)
Q Consensus 202 -----------------------------------~~~~~~~~~s~~g~~----l~sg~~d~~i~iwd~~~~---~~~~~ 239 (304)
......+.+.++... +++++.|+.|++||.... ..+..
T Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 177 DVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp EEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred EecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 011234444444433 999999999999998876 55677
Q ss_pred eecccc------------ceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCccC
Q psy4754 240 LMGHEN------------RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 240 ~~~h~~------------~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 304 (304)
+.+|.. +|++++|+|++++|++|+.|+.|++|+...+.....++ .+.. -..+.|+|+|+.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE----QLDQPISACCFNHNGNIF 330 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----CCSSCEEEEEECTTSSCE
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec----CCCCCceEEEECCCCCeE
Confidence 888876 79999999999999999999999999987654333222 2233 3568888888754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=223.61 Aligned_cols=263 Identities=13% Similarity=0.014 Sum_probs=195.4
Q ss_pred eeEEeec--cccceEeeeeccccccceeEEEEcC--------------CCCEEEEeeCC------CcEEEEeCCCceeee
Q psy4754 5 HCRLFDL--RADKEVACYKKDSILFGATSVDFSV--------------SGRLLFAGYND------YTINVWDSLKCCRVN 62 (304)
Q Consensus 5 ~v~~wd~--~~~~~~~~~~~~~~~~~i~~~~~~~--------------~g~~l~tg~~d------g~v~iwd~~~~~~~~ 62 (304)
+|||||+ .+++++.......+...+..+++++ .+..++.++.+ ++|++||.. +...+
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence 8999999 8888764433333333455555553 14555555443 799999997 44566
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEE-EEeCCC--eE
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDY--TI 138 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-sg~~dg--~i 138 (304)
.+.+|...|.+++|+|||+.|++++.|+ .-.+++||+.+++........ ..+.+++|+|+++.++ +++.++ .|
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS---SCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC---CcccCEEEcCCCCEEEEEEecCCCceE
Confidence 7788999999999999999999999875 122589999887665332221 2356899999999887 566555 49
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL 217 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 217 (304)
++||+.+++. ..+..|...+.+++|+||++.+++++. ++...+++||+.+++... +..+. ..+.+++|+|+|++|
T Consensus 250 ~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~--~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 250 YVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEG--SQNQDADVSSDGKFM 325 (415)
T ss_dssp EEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSS--SEEEEEEECTTSSEE
T ss_pred EEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-EecCC--CcccCeEECCCCCEE
Confidence 9999887654 567788889999999999999888775 566667888988766432 22221 245789999999999
Q ss_pred EEEeCC---CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC---eeeeccccccc
Q psy4754 218 FAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT---TLRDEESKNRY 277 (304)
Q Consensus 218 ~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~---~i~~~~~~~~~ 277 (304)
++++.+ ..|.+||+.+++. ..+..|. .+.+++|+|||+.|++++.|+ .|.+|++..+.
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred EEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 987754 5899999988765 4566665 899999999999999999887 78899875443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-28 Score=214.29 Aligned_cols=248 Identities=15% Similarity=0.197 Sum_probs=197.8
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccceeece
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 117 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~ 117 (304)
.++++++.|++|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+++ ++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i--~v~d~~~~~~~~~~~~~~---~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDV--SIIDTATNNVIATVPAGS---SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEE--EEEETTTTEEEEEEECSS---SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeE--EEEECCCCeEEEEEECCC---Cc
Confidence 467899999999999999999888888775 48999999999976 677789985 789999888877766543 46
Q ss_pred eeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEE-EEeecCCceEEEEeeecCCceEEE
Q psy4754 118 TSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVAC 195 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~d~~i~i~~~d~~~~~~~~~ 195 (304)
.+++|+|++++++.+ ..++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.+ ++||+++++.+..
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v--~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV--SVINTVTKAVINT 153 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEE
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEE--EEEECCCCcEEEE
Confidence 789999999988654 56799999999988776665544 578999999999877 677778885 6899998887777
Q ss_pred eecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee---cCCeeeec
Q psy4754 196 YKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS---WDTTLRDE 271 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs---~D~~i~~~ 271 (304)
+..+. .+..++|+|+++++ ++++.++.|++||+.+++.+..+. |...+.+++|+|+|++|++++ .|+.|++|
T Consensus 154 ~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 154 VSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred EecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 66543 35789999999987 567888999999999988777665 566899999999999999888 68999999
Q ss_pred cccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 272 ESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+...+....... .+.....+.++|+++.
T Consensus 230 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 230 DTGTNKITARIP----VGPDPAGIAVTPDGKK 257 (391)
T ss_dssp ETTTTEEEEEEE----CCSSEEEEEECTTSSE
T ss_pred ECCCCeEEEEEe----cCCCccEEEEccCCCE
Confidence 987654322222 2333456777777753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=222.34 Aligned_cols=222 Identities=17% Similarity=0.240 Sum_probs=178.1
Q ss_pred CCceeEEeeccc----------cceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCcee-------eee
Q psy4754 2 GKNHCRLFDLRA----------DKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCR-------VNH 63 (304)
Q Consensus 2 ~~~~v~~wd~~~----------~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~-------~~~ 63 (304)
.+++|++||+.+ .+.+.. ...+...|++++|+|++. +|++|+.||+|++||+.++.. ...
T Consensus 149 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 149 PSSDVLVFDYTKHPSKPEPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp SSSCEEEEEGGGSCSSCCTTCCCCCSEE--EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEE
T ss_pred CCCcEEEEECCCcccccCccccCCCcEE--ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecccee
Confidence 368899999987 233322 234445699999999998 999999999999999987321 455
Q ss_pred ecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCC---eeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeE
Q psy4754 64 LMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTI 138 (304)
Q Consensus 64 ~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i 138 (304)
+.+|...|.+++|+| ++.+|++++.|+.| ++||++.. ..+..+..+. ..+++++|+|++. .+++|+.|+.|
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i--~i~d~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v 302 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKL--MIWDTRNNNTSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTV 302 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEE--EEEETTCSCSSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeE--EEEECCCCCCCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeE
Confidence 678999999999999 67899999999995 78999876 3444444332 3578999999987 68899999999
Q ss_pred EEecCCc-cccceeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCC--------------ceEEEeecCcee
Q psy4754 139 NVWDSLK-CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD--------------KEVACYKKDSIL 202 (304)
Q Consensus 139 ~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~--------------~~~~~~~~~~~~ 202 (304)
++||+++ ..++..+.+|...|.+++|+|+++ ++++++.|+.+ ++||+... +.+..+..+.
T Consensus 303 ~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-- 378 (430)
T 2xyi_A 303 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-- 378 (430)
T ss_dssp EEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC--EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS--
T ss_pred EEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE--EEEeCCCCccccCccccccCCcceEEEcCCCC--
Confidence 9999987 456778889999999999999985 79999999996 68998762 3444443333
Q ss_pred eeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q psy4754 203 FGATSVDFSVSGR-LLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 203 ~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~ 233 (304)
..+.+++|+|+++ +|++++.|+.|++|++.+
T Consensus 379 ~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 379 AKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3579999999999 999999999999999764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=224.03 Aligned_cols=223 Identities=11% Similarity=0.088 Sum_probs=155.0
Q ss_pred CCceeEEeeccccceEeee---eccccccceeEEEEcC--------CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCc
Q psy4754 2 GKNHCRLFDLRADKEVACY---KKDSILFGATSVDFSV--------SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 70 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~---~~~~~~~~i~~~~~~~--------~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~ 70 (304)
.|++|||||..++++.... ....|...|.+++|+| ++++|||||.|++|+|||+.++.++..+.+|..+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 4889999999998654321 2234455599999998 7899999999999999999888888788889999
Q ss_pred EEEEEECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEecc-----------------------ceeeceeeeEEc-CC
Q psy4754 71 VSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----------------------SILFGATSVDFS-VS 125 (304)
Q Consensus 71 V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s-~~ 125 (304)
|.+++|+|++ ++|++|+.|++| ++||+.+.+........ .....+.++.|+ ++
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v--~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNI--RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEE--EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred cEEEEECCCCCceEEecCCCCEE--EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence 9999999987 489999999995 78999876543322110 011124566665 89
Q ss_pred CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC--------------------CCcEEEEeecCCceEEEEe
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--------------------DGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp--------------------~~~~las~s~d~~i~i~~~ 185 (304)
++.+++++.|+.+++||+.+......+..|...+..+.+.| ++.++++|+.|++| ++|
T Consensus 267 g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V--~lw 344 (393)
T 4gq1_A 267 GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLI--QLI 344 (393)
T ss_dssp TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEE--EEE
T ss_pred CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEE--EEE
Confidence 99999999999999999887666555555555444443333 34467788889986 699
Q ss_pred eecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
|..+++.......+. ..|.+++|+|+|++||+++.+| +.+|.+
T Consensus 345 d~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 345 NTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 998887765554443 3689999999999999998665 666654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=216.89 Aligned_cols=294 Identities=12% Similarity=0.100 Sum_probs=219.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeC--CCceeeeeecCCcCcEEEEEECC-
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVNHLMGHENRVSCLQVSP- 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~--~~~~~~~~~~~h~~~V~~l~~s~- 78 (304)
++++|++||..+++++..+... +.+.+++|+|+|++|++++.|++|++||+ .+++.+..+. +...+..++|+|
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g---~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~ 232 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTG---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKF 232 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECS---TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCS
T ss_pred CCCeEEEEECCCceEEEEEecC---cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCC
Confidence 4789999999999987766532 23789999999999999999999999999 8888888877 445679999999
Q ss_pred ---CCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccce---------eeceeeeEEcCCCCEE-EEEeCCCeEEEecCC
Q psy4754 79 ---DGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSI---------LFGATSVDFSVSGRLL-FAGYNDYTINVWDSL 144 (304)
Q Consensus 79 ---d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~ 144 (304)
||++|++++ .|+++ .+||..+.+.+..+..... ...+..+.+++++..+ ++...++.|.+||..
T Consensus 233 ~~~dg~~l~v~~~~~~~v--~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 233 KGYEDRYTIAGAYWPPQF--AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp TTCTTTEEEEEEEESSEE--EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred cCCCCCEEEEEEccCCeE--EEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 999999887 48885 6899988887776654211 0124578899976654 556678999999987
Q ss_pred ccccce-eccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEE-EcCC-CCEEEEE
Q psy4754 145 KCCRVN-HLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVD-FSVS-GRLLFAG 220 (304)
Q Consensus 145 ~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~s~~-g~~l~sg 220 (304)
+.+.+. ....+...+..+.|+|+++++++++ .+++| .+||..+++.+..+.......+-.... ++|+ +..++++
T Consensus 311 ~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v--~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 311 DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKV--AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 388 (543)
T ss_dssp TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEE--EEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeE--EEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEec
Confidence 654433 1223556688899999999766554 57775 589999998877765432211101112 4677 7777777
Q ss_pred e-CCCcEEEEeCCC-------ceeeEEeeccccceEEEEEccCCCEEEEee-------cCCeeeeccccccchhhee--e
Q psy4754 221 Y-NDYTINVWDSLK-------CCRVNHLMGHENRVSCLQVSPDGTAFSSGS-------WDTTLRDEESKNRYMQYLL--R 283 (304)
Q Consensus 221 ~-~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs-------~D~~i~~~~~~~~~~~~~~--~ 283 (304)
. .|++|++||..+ .+.+.++.+|.+.+..++|+|+|++|.+++ .|.+|++||..+.-..|.. -
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 5 679999999988 889999999999999999999999999987 3789999998765433221 1
Q ss_pred cc---ccC-CceeEEEEEecCCcc
Q psy4754 284 SR---ITK-PTQGLTVYFQDRGRS 303 (304)
Q Consensus 284 ~~---~~~-~~~~~~~~~~~~~~~ 303 (304)
.. +.+ .+.-..+.|.|+|+-
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSE
T ss_pred hhhcccCCCCCceEeccCCCCCCE
Confidence 11 122 233577788888764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=200.26 Aligned_cols=253 Identities=16% Similarity=0.139 Sum_probs=189.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeeeecCC-cCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGH-ENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h-~~~V~~l~~s~d 79 (304)
.+++|++||+.+++...... +...+.+++|+|+|++|++++ ++.|++||+.+ ++.......| ...|.+++|+|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQ---TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEE---ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeecc---CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 36789999999987654333 344589999999999999886 88999999998 7766666565 477889999999
Q ss_pred CCeEEEEe--CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEE-EEeCCCeEEEecCCc-cccceeccCc
Q psy4754 80 GTAFSSGS--WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLK-CCRVNHLMGH 155 (304)
Q Consensus 80 ~~~l~sgs--~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-sg~~dg~i~iwd~~~-~~~~~~~~~h 155 (304)
+++|++++ .++..+++.++...... ..+.... .+..+.|+|++++++ ++..++.+++|++.. ......+..|
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 99999998 44566666666655432 2222222 256788999999887 678899999998532 2334556778
Q ss_pred ccceeEEEEcCCCcEEEEee-cCCceEEEEeeec-CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC----------
Q psy4754 156 ENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLR-ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---------- 223 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d---------- 223 (304)
...+.+++|+|+++.++.++ .++.+. +|++. .......+..+. ..+..++|+|+|++|++++.+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQ--IWRVRVDGSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCE--EEEEETTSSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred CCccccceECCCCCEEEEEecCCCCcc--EEEECCCCCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 88999999999999887666 477764 56654 233344443332 356789999999999887765
Q ss_pred -CcEEEEeCCCcee--eEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 224 -YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 224 -~~i~iwd~~~~~~--~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
+.|.+||+.+++. +..+.+|...+.+++|+|+|++|++++.|.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999887654 444557889999999999999999988764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=200.82 Aligned_cols=273 Identities=12% Similarity=0.055 Sum_probs=180.7
Q ss_pred eEeeeeccccccc--eeEEEEcCCCC---EEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEEEECCCCCeEEEEe
Q psy4754 16 EVACYKKDSILFG--ATSVDFSVSGR---LLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSPDGTAFSSGS 87 (304)
Q Consensus 16 ~~~~~~~~~~~~~--i~~~~~~~~g~---~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~d~~~l~sgs 87 (304)
++..++...-.+. +.++.|-..|- .+++++ ..+|++|++.++ +.+++...|..+|..+.+.||...|+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (356)
T 2w18_A 27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA 105 (356)
T ss_dssp EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence 3444444433333 56677754432 455665 458999999998 88999999999999999999765443322
Q ss_pred CCCceEE-EEeeeCC-------CeeEeEEeccceeeceeeeEEcCCCCEEEEEe--CCCeEEEecCCc-cccceeccCcc
Q psy4754 88 WDTTLRC-RLFDLRA-------DKEVACYKKDSILFGATSVDFSVSGRLLFAGY--NDYTINVWDSLK-CCRVNHLMGHE 156 (304)
Q Consensus 88 ~D~~i~~-~~wd~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~--~dg~i~iwd~~~-~~~~~~~~~h~ 156 (304)
... +.+ .++-+.. ++.+.. .. ....+.. + ++++.+.++. .|+.|++|++.. ++.+..+.+|.
T Consensus 106 ~~~-~~~~~v~sla~spd~~~~~~~l~s-~g--~~~~v~~--l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 106 LGN-LEIREIRALFCSSDDESEKQVLLK-SG--NIKAVLG--L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp ECS-SSEEEEEEECC------CCEEEEE-EE--EEEEEEE--E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ecc-ccccceEEEEECCCccccccEEEe-CC--CeEEEEe--c-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 111 101 1111110 111110 00 0011112 2 4455555533 599999999844 66677788999
Q ss_pred cceeEEEEcC---CCcEEEEeecCCceEEEEeeecCCceEEEeecCc-eeeeeeEEEEcCCCCEE------------EEE
Q psy4754 157 NRVSCLQVSP---DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLL------------FAG 220 (304)
Q Consensus 157 ~~v~~v~~sp---~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l------------~sg 220 (304)
..+..++|+| +++.++++|.|++| ++||+++++.+.++..+. ....+.+++|+|+|+++ ++|
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TI--kIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNI--VIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEE--EEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred CceeeEEeeccCCCCceEEEecCCCcE--EEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence 9999999999 77999999999996 699999999988886443 23456788999999987 568
Q ss_pred eCCCcEEEEeCCCceeeEEe-----eccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce-eE-
Q psy4754 221 YNDYTINVWDSLKCCRVNHL-----MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GL- 293 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~- 293 (304)
+.|++|++||..+++.+..+ .+|...+.+..++ +..+|+|+.|++||+||+..+.....++ .+.. ..
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~----gH~~~vvs 330 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP----PVSDQHWS 330 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC----CC--CCCC
T ss_pred CCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec----CCCCCeEE
Confidence 88999999999999887665 3777766655554 8899999999999999998876444443 2332 23
Q ss_pred EEEEecCCccC
Q psy4754 294 TVYFQDRGRSI 304 (304)
Q Consensus 294 ~~~~~~~~~~~ 304 (304)
.++|+|+|+.|
T Consensus 331 ~vafSPDG~~L 341 (356)
T 2w18_A 331 FVKWSGTDSHL 341 (356)
T ss_dssp EEEECSSSSEE
T ss_pred EEEECCCCCEE
Confidence 47899998754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-26 Score=197.64 Aligned_cols=263 Identities=12% Similarity=0.110 Sum_probs=179.8
Q ss_pred CCceeEEeeccc-cceEeeeeccccccceeEEEEcCCCCEEEEeeCC-CcEEEEeCC--Cce--eeeeecCCcCcEEEEE
Q psy4754 2 GKNHCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-YTINVWDSL--KCC--RVNHLMGHENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d-g~v~iwd~~--~~~--~~~~~~~h~~~V~~l~ 75 (304)
++++|++||+.. ++.. ......+...+.+++|+|+|++|++++.+ +.|++|++. +++ .+..+..+. .+..++
T Consensus 13 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALT-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS 90 (343)
T ss_dssp GGTEEEEEEECTTSCEE-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred CCCeEEEEEECCCCcEE-EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence 478999999963 3221 11112233458899999999988888776 999999987 443 344454444 788999
Q ss_pred ECCCCCeEEEEeC-CCceEEEEeeeCCC---eeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCc-cccc
Q psy4754 76 VSPDGTAFSSGSW-DTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLK-CCRV 149 (304)
Q Consensus 76 ~s~d~~~l~sgs~-D~~i~~~~wd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~-~~~~ 149 (304)
|+|++++|+.++. ++.+ .+||+..+ ......... ..+..++|+|+++++++++ .++.|.+||+.+ ++..
T Consensus 91 ~s~dg~~l~~~~~~~~~i--~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 91 TDHQGQFVFVGSYNAGNV--SVTRLEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp ECTTSSEEEEEETTTTEE--EEEEEETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred EcCCCCEEEEEecCCCeE--EEEECCCCccccccccccCC---CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 9999998876665 6664 78998422 233222221 2356789999999888877 899999999876 3321
Q ss_pred e----eccC-cccceeEEEEcCCCcEEEEee-cCCceEEEEeeecC--Cce--EEEee---cC-ceeeeeeEEEEcCCCC
Q psy4754 150 N----HLMG-HENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRA--DKE--VACYK---KD-SILFGATSVDFSVSGR 215 (304)
Q Consensus 150 ~----~~~~-h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~--~~~--~~~~~---~~-~~~~~~~~~~~s~~g~ 215 (304)
. .... ....+..++|+|+++.++.++ .++.+ .+|++.. ++. ..... .. .....+..++|+|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV--DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE--EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE--EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 1 2222 234688899999999765554 67775 6898843 322 22221 11 1112345799999999
Q ss_pred EEEE-EeCCCcEEEEeCC----CceeeEEeeccccceEEEEEccCCCEEEEee-cCCeeeecccc
Q psy4754 216 LLFA-GYNDYTINVWDSL----KCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRDEESK 274 (304)
Q Consensus 216 ~l~s-g~~d~~i~iwd~~----~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs-~D~~i~~~~~~ 274 (304)
+|++ +..++.|.+||+. +.+.+..+..+.. +.+++|+|+|++|++++ .|+.|++|+.+
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 8775 5578999999987 3345555555544 88999999999888777 68999999654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-26 Score=204.06 Aligned_cols=240 Identities=12% Similarity=0.010 Sum_probs=185.9
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY---TINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
++|++||+.+++... +. .+...+.+++|+|+|+.|++++.|+ .|++||+.+++.. .+..|...+.+++|+|||
T Consensus 159 ~~i~i~d~~g~~~~~-l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFV-VH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEE-EE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS
T ss_pred ceEEEEcCCCCCCEE-Ee--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC
Confidence 799999998654432 22 2234589999999999999999885 9999999988764 467788899999999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CC--eEEEecCCccccceeccCcc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DY--TINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~ 156 (304)
+.|+ +++.|+...+++||+.+++.. .+..+. ..+..+.|+|++++++.++. ++ .|.+||+.+++ ...+..|.
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~ 310 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEG 310 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSS
T ss_pred CEEEEEEecCCCceEEEEECCCCCEE-eCcCCC--CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCC
Confidence 9777 777787767789999876543 333222 23568899999999988876 44 67888987654 34455677
Q ss_pred cceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC---cEEEEeCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY---TINVWDSL 232 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~---~i~iwd~~ 232 (304)
..+.+++|+|||+.+++++.+ +...+++||+.+++... +..+. .+.+++|+|+|++|++++.++ .|.+||+.
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 789999999999999988765 33446899998876533 32222 568899999999999988776 79999986
Q ss_pred CceeeEEeeccccceEEEEEccCC
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g 256 (304)
+..+..+.+|.+.|.+++|+|.-
T Consensus 387 -g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 387 -GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -SCCEEECCCSSSEEEEEEECCCC
T ss_pred -CCcEEEeeCCCCCCcCCcccccc
Confidence 45677788999999999999964
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=215.28 Aligned_cols=290 Identities=13% Similarity=0.049 Sum_probs=206.2
Q ss_pred eeEEeeccccceEeeeeccccc----------------------cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--e
Q psy4754 5 HCRLFDLRADKEVACYKKDSIL----------------------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--R 60 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~----------------------~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~ 60 (304)
+|++||+.+++........... ..+.+++|+|||++|++++. +.|.+||+.++. .
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence 8999999999876555433222 23789999999999998876 999999998873 4
Q ss_pred eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce-e-e------------ceeeeEEcCCC
Q psy4754 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-L-F------------GATSVDFSVSG 126 (304)
Q Consensus 61 ~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~-~-~------------~~~~~~~s~~~ 126 (304)
...+..|...+..++|+|||++|+.++. +. +++||+.+++.......... . . .+..+.||||+
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~--i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg 220 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIRG-RN--LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD 220 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEET-TE--EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS
T ss_pred EEEcccCCcccccccCCCCCCEEEEEeC-Cc--EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC
Confidence 5557778889999999999999999885 45 58999987665433221110 0 0 13578999999
Q ss_pred CEEEEEeCCC---------------------------------eEEEecCCc-cccceecc--CcccceeEEEEcCCCcE
Q psy4754 127 RLLFAGYNDY---------------------------------TINVWDSLK-CCRVNHLM--GHENRVSCLQVSPDGTA 170 (304)
Q Consensus 127 ~~l~sg~~dg---------------------------------~i~iwd~~~-~~~~~~~~--~h~~~v~~v~~sp~~~~ 170 (304)
++|++++.|+ .|.+||+.+ ++...... .|...+..++| |||+.
T Consensus 221 ~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~ 299 (741)
T 2ecf_A 221 SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH 299 (741)
T ss_dssp SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE
T ss_pred CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE
Confidence 9999987665 889999877 65433222 47788999999 99999
Q ss_pred EEEeecC---CceEEEEeeecCCceEEEeecCce--eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CceeeEEeeccc
Q psy4754 171 FSSGSWD---TTLRCRLFDLRADKEVACYKKDSI--LFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRVNHLMGHE 244 (304)
Q Consensus 171 las~s~d---~~i~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~ 244 (304)
++.++.+ ....+++||+.+++....+..+.. ...+..++|+|||+++++++.|+.++||... ++. ...+..|.
T Consensus 300 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~ 378 (741)
T 2ecf_A 300 LSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN 378 (741)
T ss_dssp EEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS
T ss_pred EEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc
Confidence 8876542 234468999988876555433221 0023578899999999999999988888654 344 67788888
Q ss_pred cceEEE-EEccCCCEEE-EeecCC--eeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 245 NRVSCL-QVSPDGTAFS-SGSWDT--TLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 245 ~~i~~l-~~sp~g~~la-sgs~D~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
..|.++ +|+|+|+.|+ +++.|+ ++++|+.+..... ..+++....-..+.|+|+|+.
T Consensus 379 ~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~---~~~l~~~~~~~~~~~spdg~~ 438 (741)
T 2ecf_A 379 WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ---PQRLSKAPGMHSASFARNASV 438 (741)
T ss_dssp SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC---CEECCCSCSEEEEEECTTSSE
T ss_pred eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC---eeecccCCCceEEEECCCCCE
Confidence 888887 5999998776 455555 8999987532110 112222222246778888764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=191.84 Aligned_cols=263 Identities=8% Similarity=0.022 Sum_probs=190.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee-CCCcEEEEeCCCcee-eeeecCCcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~-~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d 79 (304)
++++|++||+.+++........ .... +++|+|+|+++++++ .++.|.+||+.+++. ...+..+..+..+++|+|+
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~--~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d 94 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLG--YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPD 94 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECC--CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTT
T ss_pred CCCeEEEEeCcccceeeeEEcc--CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCC
Confidence 4678999999999887665532 2335 999999999665554 489999999998887 6666667666666999999
Q ss_pred CCeEEEEeCCC---ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCe-EEEecCCccccc----e
Q psy4754 80 GTAFSSGSWDT---TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYT-INVWDSLKCCRV----N 150 (304)
Q Consensus 80 ~~~l~sgs~D~---~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~-i~iwd~~~~~~~----~ 150 (304)
+++|+++..++ . +++||+.+.+.+..+.... ....++|+|++++++++ ..++. |.+|++.....+ .
T Consensus 95 g~~l~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 95 DQFAVTVTGLNHPFN--MQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp SSEEEECCCSSSSCE--EEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEecCCCCccc--EEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 99998555542 5 5799999888776655432 34689999999866554 55578 999997643322 1
Q ss_pred eccCcccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCce---EEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCc
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGY-NDYT 225 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~ 225 (304)
........+..++|+|+++.++ ++..++.+ .+||+.+++. +..+... ..+..++|+|+|++++++. .++.
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v--~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANLIGNSI--GILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEETTTTEE--EEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeCCCCeE--EEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCE
Confidence 2223345678999999998655 44456764 6899988877 6665543 2457889999999776654 5678
Q ss_pred EEEEeCCCcee--eEEeecc----ccc---eEEEEEccCCCEEEEee-cCCeeeeccccccc
Q psy4754 226 INVWDSLKCCR--VNHLMGH----ENR---VSCLQVSPDGTAFSSGS-WDTTLRDEESKNRY 277 (304)
Q Consensus 226 i~iwd~~~~~~--~~~~~~h----~~~---i~~l~~sp~g~~lasgs-~D~~i~~~~~~~~~ 277 (304)
|.+||..+++. +..+..+ ..+ ..+++|+|||++|+.++ .++.|++|+...+.
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999988776 4443332 222 24589999999886554 56799999987654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=191.17 Aligned_cols=264 Identities=12% Similarity=0.029 Sum_probs=193.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecC-C----cCcEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMG-H----ENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~-h----~~~V~~l~ 75 (304)
.+++|++||+.+++.+..+........+..++|+|+|+.+ ++++.++.|.+||+.+++.+..+.. + ...+..++
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence 4789999999999887665533211036789999999755 5677789999999998887766542 2 22567899
Q ss_pred ECCCCCeEEEEe------------CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 76 VSPDGTAFSSGS------------WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 76 ~s~d~~~l~sgs------------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
|+|+|++|++++ .++. +.+||+.+.+.+..+.... .+..+.|+|++++++++ ++.|.+||+
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~~~i~~~d~ 161 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTR--VALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--GRDLHVMDP 161 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--SSSEEEEET
T ss_pred ECCCCCEEEEEecccccccccccccCce--EEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--CCeEEEEEC
Confidence 999999888875 4566 4789998877766554422 34678899999988887 689999999
Q ss_pred CccccceeccCcccceeEEEEcCCCcEEEEeecC-Cce---------------------EEEEeeecCCceEEEeecCce
Q psy4754 144 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTL---------------------RCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 144 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d-~~i---------------------~i~~~d~~~~~~~~~~~~~~~ 201 (304)
.+.+....+..+.. ...+.|+|+++.++..+.+ +.+ .+.+||+.+++.. .......
T Consensus 162 ~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~ 239 (337)
T 1pby_B 162 EAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIM 239 (337)
T ss_dssp TTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEEC
T ss_pred CCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCC
Confidence 88776655443321 1123789998866554433 322 3578898887654 2221111
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
...+..++|+|+|++++++ ++.|.+||..+++.+..+..+ ..+.+++|+|+|++|++++.|+.|++|++..+.
T Consensus 240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 1245689999999999988 689999999998887776643 567899999999999999999999999986543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=212.04 Aligned_cols=271 Identities=11% Similarity=0.014 Sum_probs=187.8
Q ss_pred CCceeEEeeccccceEeeeecccc-ccceeEEEEcCCCCEEEEeeCC---------CcEEEEeCCCcee--eeeecCCcC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYND---------YTINVWDSLKCCR--VNHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~l~tg~~d---------g~v~iwd~~~~~~--~~~~~~h~~ 69 (304)
.|++|++||+.++++...+..+.. ...+.+++|+|||++|++++.+ +.+.+||+.+++. +....+|..
T Consensus 35 ~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 367899999999987655543221 1248999999999999998775 7888999988765 333345666
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceee----------------ceeeeEEcCCCCEEEEEe
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF----------------GATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~----------------~~~~~~~s~~~~~l~sg~ 133 (304)
.+..++|||||+.|+.++. +. +++||+.+++............ ....+.||||+++|++++
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~--i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NN--IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TE--EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred cccccEECCCCCEEEEEEC-Ce--EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 6889999999999999886 45 5899998766554433211100 125789999999999887
Q ss_pred CCC----------------------------------eEEEecCCccccceeccCc------ccceeEEEEcCCCcEEEE
Q psy4754 134 NDY----------------------------------TINVWDSLKCCRVNHLMGH------ENRVSCLQVSPDGTAFSS 173 (304)
Q Consensus 134 ~dg----------------------------------~i~iwd~~~~~~~~~~~~h------~~~v~~v~~sp~~~~las 173 (304)
.++ .|.+||+.+.+....+..+ ...+..++|+|||+.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence 543 8999998876654444443 678999999999998877
Q ss_pred eecC--CceEEEEeeecCCceEEEeecCc-eeee--eeEEEEcCCCCEEEE--EeCCC------cEEEEeC-CCce--ee
Q psy4754 174 GSWD--TTLRCRLFDLRADKEVACYKKDS-ILFG--ATSVDFSVSGRLLFA--GYNDY------TINVWDS-LKCC--RV 237 (304)
Q Consensus 174 ~s~d--~~i~i~~~d~~~~~~~~~~~~~~-~~~~--~~~~~~s~~g~~l~s--g~~d~------~i~iwd~-~~~~--~~ 237 (304)
.+.. ....+++||+.+++......... .... ...++|+|||+.|+. +..++ .|.+||. ..+. +.
T Consensus 272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (723)
T 1xfd_A 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351 (723)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce
Confidence 6543 22346899998877654432211 1001 136789999997765 45666 5667773 3333 14
Q ss_pred EEeeccccceEE-EEEccCCCEEEEeecC---Ceeeeccccc
Q psy4754 238 NHLMGHENRVSC-LQVSPDGTAFSSGSWD---TTLRDEESKN 275 (304)
Q Consensus 238 ~~~~~h~~~i~~-l~~sp~g~~lasgs~D---~~i~~~~~~~ 275 (304)
..+..+...+.. ++|+|||+.|+..+.+ +++++|+.+.
T Consensus 352 ~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 445544444554 6999999999866655 7899997654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-24 Score=184.33 Aligned_cols=267 Identities=12% Similarity=0.061 Sum_probs=176.1
Q ss_pred CceeEEeeccc--cceEeeeeccccccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRA--DKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~--~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
++.|.+|++.. ++... ............++|+|+|++++++.. ++.|.+|++.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTN-DGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEE-EEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEE-eeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 34577776654 44322 111222334788999999994444432 6999999997664 44444557778889999
Q ss_pred CCCCCeEEEEe-CCCceEEEEeeeCCC---eeEeEEeccce-------eeceeeeEEcCCCCEEEEEeCCCeEEEecCC-
Q psy4754 77 SPDGTAFSSGS-WDTTLRCRLFDLRAD---KEVACYKKDSI-------LFGATSVDFSVSGRLLFAGYNDYTINVWDSL- 144 (304)
Q Consensus 77 s~d~~~l~sgs-~D~~i~~~~wd~~~~---~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~- 144 (304)
+|||++|++++ .++++ .+||+... ..+........ ...+..++|+|+++.+++...++.|.+||+.
T Consensus 94 spdg~~l~~~~~~~~~v--~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTA--EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp ETTTTEEEEEETTTTEE--EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred CCCCCEEEEEeCCCCEE--EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 99999888887 56774 78998632 22222221110 0124578999999966666678999999987
Q ss_pred cccc--ceeccCc-ccceeEEEEcCCCcEEEE-eecCCceEEEEeeecC--Cce--EEEeecCce----eeeeeEEEEcC
Q psy4754 145 KCCR--VNHLMGH-ENRVSCLQVSPDGTAFSS-GSWDTTLRCRLFDLRA--DKE--VACYKKDSI----LFGATSVDFSV 212 (304)
Q Consensus 145 ~~~~--~~~~~~h-~~~v~~v~~sp~~~~las-~s~d~~i~i~~~d~~~--~~~--~~~~~~~~~----~~~~~~~~~s~ 212 (304)
+++. +..+..+ ...+..++|+|||++++. +..++.+ .+|++.. ++. +........ ...+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v--~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI--ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE--EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE--EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 3321 1112222 235778999999996655 4556665 5787764 332 222211110 02367899999
Q ss_pred CCCEE-EEEeCCCcEEEEeCC---CceeeEEeeccccceEEEEEccCCCEEEEeecC-Ceeeecccc
Q psy4754 213 SGRLL-FAGYNDYTINVWDSL---KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRDEESK 274 (304)
Q Consensus 213 ~g~~l-~sg~~d~~i~iwd~~---~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D-~~i~~~~~~ 274 (304)
+|++| ++...++.|.+|++. +.+.+..+..|...+.+++|+|||++|++++.+ +.|++|+.+
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99987 556678999999986 334566666677778999999999988887764 899999554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-24 Score=198.69 Aligned_cols=278 Identities=18% Similarity=0.137 Sum_probs=204.7
Q ss_pred CceeEEeec--cccceEeeeeccccccceeEEEEcC----CCCEEEEee-CCCcEEEEeCCCceeeeeecC---------
Q psy4754 3 KNHCRLFDL--RADKEVACYKKDSILFGATSVDFSV----SGRLLFAGY-NDYTINVWDSLKCCRVNHLMG--------- 66 (304)
Q Consensus 3 ~~~v~~wd~--~~~~~~~~~~~~~~~~~i~~~~~~~----~g~~l~tg~-~dg~v~iwd~~~~~~~~~~~~--------- 66 (304)
|++|++||+ .+++++..++. ......++|+| +|+++++++ .+++|.+||..+++.++.+..
T Consensus 199 d~~V~v~D~~~~t~~~~~~i~~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 199 DARIDMIDLWAKEPTKVAEIKI---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp TSEEEEEETTSSSCEEEEEEEC---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred CCeEEEEECcCCCCcEEEEEec---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 588999999 78877665542 33478999999 999998887 489999999999988877754
Q ss_pred -C-cCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEe--EEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEE
Q psy4754 67 -H-ENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINV 140 (304)
Q Consensus 67 -h-~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~i 140 (304)
| ...+..+.++|++. ++++...+++ +++||..+.+.+. .+... .....+.|+|+++++++++ .+++|.+
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~--i~vvd~~~~~~l~~~~i~~~---~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGK--VLLVNYKDIDNLTVTSIGAA---PFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTE--EEEEECTTSSSCEEEEEECC---SSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCe--EEEEEecCCCcceeEEeccC---cCccCceECCCCCEEEEEecCCCeEEE
Confidence 2 23789999999776 4556666777 4789987654433 22211 1245789999999877655 5899999
Q ss_pred ecCCccccceeccC----cccceeEEEEcCC-CcEEEEee-cCCceEEEEeeecC-------CceEEEeecCceeeeeeE
Q psy4754 141 WDSLKCCRVNHLMG----HENRVSCLQVSPD-GTAFSSGS-WDTTLRCRLFDLRA-------DKEVACYKKDSILFGATS 207 (304)
Q Consensus 141 wd~~~~~~~~~~~~----h~~~v~~v~~sp~-~~~las~s-~d~~i~i~~~d~~~-------~~~~~~~~~~~~~~~~~~ 207 (304)
||..+++.+..+.. |.+....+ ++|+ +..+++++ .|++| .+||..+ .+.+..+..+. ..+..
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V--~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~ 425 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSI--SLIGTDPKNHPQYAWKKVAELQGQG--GGSLF 425 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE--EEEECCTTTCTTTBTSEEEEEECSC--SCCCC
T ss_pred EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceE--EEEEeCCCCCchhcCeEEEEEEcCC--CCceE
Confidence 99998887766543 65544443 4777 66677775 57885 6899987 67777777654 24567
Q ss_pred EEEcCCCCEEEEEeC-------CCcEEEEeCCCceee-EEe--------eccccceEEEEEccCCCEEEEee-----cCC
Q psy4754 208 VDFSVSGRLLFAGYN-------DYTINVWDSLKCCRV-NHL--------MGHENRVSCLQVSPDGTAFSSGS-----WDT 266 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~-------d~~i~iwd~~~~~~~-~~~--------~~h~~~i~~l~~sp~g~~lasgs-----~D~ 266 (304)
+.++|+|++|.+++. +++|.+||+.+++.. ..+ ..|..++..++|+|+|+.+..+. .|+
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~ 505 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 505 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCC
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCC
Confidence 899999999999872 679999999987766 333 35678999999999999988663 479
Q ss_pred eeeeccccccchhheee-ccccCCceeE
Q psy4754 267 TLRDEESKNRYMQYLLR-SRITKPTQGL 293 (304)
Q Consensus 267 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 293 (304)
.|.+||.....+....+ .++..|.+..
T Consensus 506 ~i~v~D~~t~~~~~~i~~~~~~~p~g~~ 533 (543)
T 1nir_A 506 ALVVVDDKTLKLKAVVKDPRLITPTGKF 533 (543)
T ss_dssp EEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred eEEEEECCCceEEEeecCCCccCCCeee
Confidence 99999987765443333 3344444433
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-23 Score=180.91 Aligned_cols=251 Identities=11% Similarity=0.053 Sum_probs=193.2
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCE-EEEeeCCCcEEEEeCCCceeeeeecCCcCc---------EE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENR---------VS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~-l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~---------V~ 72 (304)
+++|.+||..+++....+... ..+..++|+|+|+. +++...++.|.+||..+++.+..+..+... +.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND---LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES---SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE
T ss_pred CccEEEEcCCCCeEEEEEecC---CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc
Confidence 678999999999877665532 23678999999984 556677899999999999887777654422 78
Q ss_pred EEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce
Q psy4754 73 CLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
+++|+|++++++.++. ++. +++||..+.+....+.... ..+..+.|+|+++++++++.++.|.+||..+.+.+.
T Consensus 145 ~~~~s~dg~~l~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~ 220 (353)
T 3vgz_A 145 ELVADDATNTVYISGIGKESV--IWVVDGGNIKLKTAIQNTG--KMSTGLALDSEGKRLYTTNADGELITIDTADNKILS 220 (353)
T ss_dssp EEEEETTTTEEEEEEESSSCE--EEEEETTTTEEEEEECCCC--TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred eEEECCCCCEEEEEecCCCce--EEEEcCCCCceEEEecCCC--CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE
Confidence 8999999998777663 555 5789999888777665221 124678999999999999999999999998877665
Q ss_pred ecc----CcccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe-CCC
Q psy4754 151 HLM----GHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDY 224 (304)
Q Consensus 151 ~~~----~h~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~ 224 (304)
.+. ++...+..++|+|+++.++.++.+ +. +.+||..+++.+..+.... ...++|+|+|++++++. .++
T Consensus 221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 221 RKKLLDDGKEHFFINISLDTARQRAFITDSKAAE--VLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE--EEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE--EEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCC
Confidence 543 355678889999999977666554 66 4689998888776665433 25688999999665554 689
Q ss_pred cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 225 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.|.+||..+++.+..+..+ ..+.+++|+|||++|..+..++.
T Consensus 295 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp EEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCC
T ss_pred eEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcccc
Confidence 9999999999888777654 47899999999997766655543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-25 Score=209.39 Aligned_cols=265 Identities=11% Similarity=-0.032 Sum_probs=189.5
Q ss_pred ceeEEEEcCCCCEEEEeeC-CC-----cEEEEeCCCceeeeeecCCcC------------------------cEEEEEEC
Q psy4754 28 GATSVDFSVSGRLLFAGYN-DY-----TINVWDSLKCCRVNHLMGHEN------------------------RVSCLQVS 77 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~-dg-----~v~iwd~~~~~~~~~~~~h~~------------------------~V~~l~~s 77 (304)
.+.+++|+|||++|++++. |+ +|++||+.+++....+..+.. .|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4889999999999999988 88 999999998876665554432 37899999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCe--eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
|||++|++++. +. +++||+.++. ....+..+ ...+..+.|||||++++.++ ++.|.+||+.+++.......+
T Consensus 118 pDg~~l~~~~~-~~--i~~~d~~~~~~~~~~~l~~~--~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 118 PDAQRLLFPLG-GE--LYLYDLKQEGKAAVRQLTHG--EGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp TTSSEEEEEET-TE--EEEEESSSCSTTSCCBCCCS--SSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred CCCCEEEEEeC-Cc--EEEEECCCCCcceEEEcccC--CcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 99999999886 55 5899998762 22222222 12356889999999999887 469999998876544333333
Q ss_pred ccc----------------eeEEEEcCCCcEEEEeecCC-------------------------------ceEEEEeeec
Q psy4754 156 ENR----------------VSCLQVSPDGTAFSSGSWDT-------------------------------TLRCRLFDLR 188 (304)
Q Consensus 156 ~~~----------------v~~v~~sp~~~~las~s~d~-------------------------------~i~i~~~d~~ 188 (304)
... +..++|+|||+.|++++.|+ .+.+++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 322 47799999999999887664 2346789988
Q ss_pred C-CceEEEeecCceeeeeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCceeeEEeecccc----ceEEEEEccCCCE
Q psy4754 189 A-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-----DYTINVWDSLKCCRVNHLMGHEN----RVSCLQVSPDGTA 258 (304)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~-----d~~i~iwd~~~~~~~~~~~~h~~----~i~~l~~sp~g~~ 258 (304)
+ ++.............+..++| |||++|++++. +..|.+||..+++....+..|.. .+.+++|+|||+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 7 665443322112235688999 99999997653 56799999998877666655543 4568999999999
Q ss_pred EEEeecCCeeeeccccccchhheeeccccCCceeE-EE-EEecCCcc
Q psy4754 259 FSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGL-TV-YFQDRGRS 303 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 303 (304)
+++++.|+.+++|..+.... ..+++.+...+ .+ .++|+|+.
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK----AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC----EEESCCSSSCEEEEEEEETTTTE
T ss_pred EEEecCCCccEEEEEcCCCC----eeeeeecceEEEeEeEEeCCCCE
Confidence 99999999999887653221 22333333322 33 47887753
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=208.15 Aligned_cols=241 Identities=11% Similarity=0.068 Sum_probs=173.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC---cEEEEEECCCCCeEEEEeCCCce-------EEEEee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN---RVSCLQVSPDGTAFSSGSWDTTL-------RCRLFD 98 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~d~~~l~sgs~D~~i-------~~~~wd 98 (304)
..+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.|..+ .+++||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 577899999997766 7899999999999987777776664 49999999999999999876432 257999
Q ss_pred eCCCeeEeEEecc-ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc------------------e
Q psy4754 99 LRADKEVACYKKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR------------------V 159 (304)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~------------------v 159 (304)
+.+++. ..+... .....+..++|||||+.++.++. +.|++||+.+++.......+... +
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 987664 222211 11112567899999999999886 79999998876654433333332 3
Q ss_pred eEEEEcCCCcEEEEeecCC--------------------------------ceEEEEeeecCCceEEEeecCc----eee
Q psy4754 160 SCLQVSPDGTAFSSGSWDT--------------------------------TLRCRLFDLRADKEVACYKKDS----ILF 203 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~--------------------------------~i~i~~~d~~~~~~~~~~~~~~----~~~ 203 (304)
.+++|+|||+.|++++.|. ...+++||+.+++....+.... ...
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999887653 1246789988776433333221 123
Q ss_pred eeeEEEEcCCCCEEEEEeC----CCcEEEEeCCCceeeEEeec-cccceE----EEEEccCCCEEEE--eecCC----e-
Q psy4754 204 GATSVDFSVSGRLLFAGYN----DYTINVWDSLKCCRVNHLMG-HENRVS----CLQVSPDGTAFSS--GSWDT----T- 267 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~----d~~i~iwd~~~~~~~~~~~~-h~~~i~----~l~~sp~g~~las--gs~D~----~- 267 (304)
.+..++|+|||++|++... +..|.+||+.+++....+.. |...+. +++|||||+.|+. +..|+ .
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 5678999999999877643 35799999988876655543 344443 7899999997775 45666 4
Q ss_pred -eeecc
Q psy4754 268 -LRDEE 272 (304)
Q Consensus 268 -i~~~~ 272 (304)
|.+|+
T Consensus 336 ~l~~~d 341 (723)
T 1xfd_A 336 HITVSS 341 (723)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 55555
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=203.94 Aligned_cols=286 Identities=13% Similarity=0.083 Sum_probs=191.1
Q ss_pred eEEeeccccce--Eeeeecccc--------------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC
Q psy4754 6 CRLFDLRADKE--VACYKKDSI--------------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 69 (304)
Q Consensus 6 v~~wd~~~~~~--~~~~~~~~~--------------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~ 69 (304)
| +||+.++++ ...+..... ...+.+++|+|| ..++.+ .++++++||+.+++... +..+..
T Consensus 46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~ 121 (706)
T 2z3z_A 46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNE 121 (706)
T ss_dssp E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTT
T ss_pred E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcc
Confidence 8 999999977 333322111 135899999999 555444 45999999998876544 445677
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCC-----CeeEeEEeccce-e-e----------ceeeeEEcCCCCEEEEE
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-----DKEVACYKKDSI-L-F----------GATSVDFSVSGRLLFAG 132 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~-----~~~~~~~~~~~~-~-~----------~~~~~~~s~~~~~l~sg 132 (304)
.+.+++|+|||+.|+++ .|+. +++||+.+ ++.......... . . .+..+.|+||+++|+++
T Consensus 122 ~~~~~~~SpdG~~la~~-~~~~--i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYV-RNHN--LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp CCTTCEECTTSSEEEEE-ETTE--EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred cccCCcCCCCCCEEEEE-ECCe--EEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 78899999999999985 5777 47999987 554432221111 0 0 13678999999999998
Q ss_pred e---------------------------------CCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEeecC
Q psy4754 133 Y---------------------------------NDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 133 ~---------------------------------~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~d 177 (304)
+ .+..|.+||+.+++..... ..|...+..++|+||++.+++++.|
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence 7 4578999999876643322 2567789999999999999988766
Q ss_pred C---ceEEEEeeecCCceEEEee-c--CceeeeeeEEEEcC--CCCEEEEEeCCCcEEEEeCC-CceeeEEeeccccceE
Q psy4754 178 T---TLRCRLFDLRADKEVACYK-K--DSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSL-KCCRVNHLMGHENRVS 248 (304)
Q Consensus 178 ~---~i~i~~~d~~~~~~~~~~~-~--~~~~~~~~~~~~s~--~g~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~~~i~ 248 (304)
. ...+++||+.+++...... . ......+..++|+| +|+++++++.|+.++||... ++..+..+..|...+.
T Consensus 279 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred CCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 5 2346799998873332221 1 11111235678999 99999999999999999875 5667777888888887
Q ss_pred E-EEEccCCCEEEEeecC-C----eeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 249 C-LQVSPDGTAFSSGSWD-T----TLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 249 ~-l~~sp~g~~lasgs~D-~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+ ++|+|+|+.|+.++.+ + .|..|+...+... +++....-..+.|+|+|+.
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-----DLTPESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-----ESCCSSSEEEEEECTTSSE
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-----eccCCCceEEEEECCCCCE
Confidence 7 8999999988765554 3 4444454333211 1221222245778888764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-23 Score=180.09 Aligned_cols=265 Identities=10% Similarity=0.054 Sum_probs=197.2
Q ss_pred ceeEEEEcCCCCEEEEeeC-------CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeee
Q psy4754 28 GATSVDFSVSGRLLFAGYN-------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDL 99 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~ 99 (304)
++..++|+|+|+.+++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++ ++..++. +.+||.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~--v~~~d~ 118 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA--VTAIDA 118 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE--EEEEET
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCE--EEEEeC
Confidence 4788999999998877764 57899999999987777653 34467899999999555 4455676 478999
Q ss_pred CCCeeEeEEecccee-------eceeeeEEcCCCCEEEEEe--CCCeEEEecCCccccceeccCcccceeEEEEcCCCcE
Q psy4754 100 RADKEVACYKKDSIL-------FGATSVDFSVSGRLLFAGY--NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 170 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 170 (304)
.+++.+..+...... ..+..+.|+|+++++++++ .++.|.+||..+.+.+..+..+...+.+++|+|+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 888877666543211 1246789999999887765 4789999999888777766656666889999999999
Q ss_pred EEEeecCCceEEEEeeecCCceEEEeecCc--eeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCceeeEEeeccccce
Q psy4754 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHENRV 247 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~~~~~~~~~~~h~~~i 247 (304)
+++++.++.+ .+||..+++....+.... ....+..++|+|+|+++++++. ++.|.+||..+++.+..+..+. .
T Consensus 199 l~~~~~~~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~ 274 (353)
T 3vgz_A 199 LYTTNADGEL--ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S 274 (353)
T ss_dssp EEEECTTSEE--EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C
T ss_pred EEEEcCCCeE--EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C
Confidence 9998888875 589999888766654311 1234577999999997777654 4899999999988887776543 2
Q ss_pred EEEEEccCCCEE-EEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 248 SCLQVSPDGTAF-SSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 248 ~~l~~sp~g~~l-asgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
.+++|+|+|+++ ++...|+.|.+|+...+..... +..+...-.++++|+|+.
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT----FDTPTHPNSLALSADGKT 327 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----EECCSEEEEEEECTTSCE
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE----EecCCCCCeEEEcCCCCE
Confidence 679999999855 4555799999999765442222 222334567788888764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=198.22 Aligned_cols=266 Identities=16% Similarity=0.133 Sum_probs=185.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-----ceeeeeecCCcCc-------
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-----CCRVNHLMGHENR------- 70 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-----~~~~~~~~~h~~~------- 70 (304)
+++|++||+.+++...... ....+.+++|+|||+.|+.+ .|+.|++||+.+ ++.......+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFD---TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEEC---CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccC---CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 5789999999987644322 22347889999999999885 789999999988 7665544444443
Q ss_pred -------EEEEEECCCCCeEEEEeCC-------------------------------CceEEEEeeeCCCeeEeEEeccc
Q psy4754 71 -------VSCLQVSPDGTAFSSGSWD-------------------------------TTLRCRLFDLRADKEVACYKKDS 112 (304)
Q Consensus 71 -------V~~l~~s~d~~~l~sgs~D-------------------------------~~i~~~~wd~~~~~~~~~~~~~~ 112 (304)
+.+++|+|||++|++++.| ....+++||+.+++.........
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 4789999999999998843 33557899998776543322111
Q ss_pred eeeceeeeEEcCCCCEEEEEeCCC-----eEEEecCCccccceecc--Cccc---ceeEEEEcC--CCcEEEEeecCCce
Q psy4754 113 ILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCCRVNHLM--GHEN---RVSCLQVSP--DGTAFSSGSWDTTL 180 (304)
Q Consensus 113 ~~~~~~~~~~s~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~--~h~~---~v~~v~~sp--~~~~las~s~d~~i 180 (304)
....+..+.|+||++++++++.++ .|.+||+.+++....+. .+.. .+..++|+| |++++++++.|+.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 112356899999999999877665 99999998773333222 1222 246789999 99999999999887
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeE-EEEcCCCCEEEEEeC-CC----cEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATS-VDFSVSGRLLFAGYN-DY----TINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~~g~~l~sg~~-d~----~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
+++.++. .++.+..+..+. ..+.. ++|+|+|+.|+.++. ++ .|..||..++. +..+ .|...+.+++|||
T Consensus 336 ~l~~~~~-~~~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~sp 410 (706)
T 2z3z_A 336 HLYLYDT-TGRLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSP 410 (706)
T ss_dssp EEEEEET-TSCEEEECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECT
T ss_pred EEEEEEC-CCCEEEecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCCceEEEEECC
Confidence 5444443 344444443332 23444 789999998766544 44 56666766654 3334 3777899999999
Q ss_pred CCCEEEEeecC----Ceeeeccccccc
Q psy4754 255 DGTAFSSGSWD----TTLRDEESKNRY 277 (304)
Q Consensus 255 ~g~~lasgs~D----~~i~~~~~~~~~ 277 (304)
||++|+....+ ..|.+|+...+.
T Consensus 411 dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 411 DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 99998876544 459999876544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-24 Score=178.57 Aligned_cols=225 Identities=14% Similarity=0.112 Sum_probs=163.6
Q ss_pred EeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC-CeeEeEEeccceeeceeeeE
Q psy4754 43 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVD 121 (304)
Q Consensus 43 tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~~~~~~ 121 (304)
+++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++ ++. +++||+.. .+........ ....+.++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~--i~~~d~~~~~~~~~~~~~~-~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGL--LYRLSLAGDPSPEKVDTGF-ATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTE--EEEEESSSCCSCEECCCTT-CCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCe--EEEEeCCCCCCceEecccc-ccccccceE
Confidence 5578999999999888755 4556889999999999999999987 666 57999987 6554433322 112456789
Q ss_pred EcCCCCEEEEEe--CCCeEEEe--cCCccccceeccCcccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCceEEEe
Q psy4754 122 FSVSGRLLFAGY--NDYTINVW--DSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACY 196 (304)
Q Consensus 122 ~s~~~~~l~sg~--~dg~i~iw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~~~~~ 196 (304)
|+|++++++++. .++...+| +..+.. ...+..+ ..+..++|+|+++.++ +++.|+.+.++.++..+.+.. .+
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~ 168 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RL 168 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-Ec
Confidence 999999999988 33445555 444433 3333333 3588899999999877 777888865444444444332 22
Q ss_pred ecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCC-CceeeEEeeccccceEEEEEccCCCEEEEeecC---------
Q psy4754 197 KKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSL-KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD--------- 265 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D--------- 265 (304)
.... ..+.+++|+|+|++|+.++ .++.+++|++. .+..+..+..|...+.+++|+|+|++|+.++.|
T Consensus 169 ~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 169 THGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred ccCC--CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 2221 3468899999999888766 58899999875 455677788888899999999999999998876
Q ss_pred --Ceeeeccccccc
Q psy4754 266 --TTLRDEESKNRY 277 (304)
Q Consensus 266 --~~i~~~~~~~~~ 277 (304)
..|.+|++..+.
T Consensus 247 ~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 247 LDVRVQLMDMDGGN 260 (297)
T ss_dssp EEEEEEEEETTSCS
T ss_pred CceEEEEEecCCCC
Confidence 568899876654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=175.89 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=176.0
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 31 ~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
.+++++++.++++++.+++|.+||+.+++.+..+..+. ..+..++|+|+++.++ ++..++.+ .+||+.+.+....+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i--~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI--YGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE--EEEeCCCCcEEEEE
Confidence 45778889999999999999999999998887776543 2567899999998654 55567774 78999888776655
Q ss_pred eccce----eeceeeeEEcCCCCEEEEEeCC------------CeEEEecCCcccccee--ccCcccceeEEEEcCCCcE
Q psy4754 109 KKDSI----LFGATSVDFSVSGRLLFAGYND------------YTINVWDSLKCCRVNH--LMGHENRVSCLQVSPDGTA 170 (304)
Q Consensus 109 ~~~~~----~~~~~~~~~s~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~ 170 (304)
..... ...+..+.|+|+++++++++.+ +.|.+||+.+++.... ...+...+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS- 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-
Confidence 43211 1225678999999999998865 8999999877443221 123344688999999999
Q ss_pred EEEeecCCceEEEEeeecCCceEEEeecCc-------------------------e------------------------
Q psy4754 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDS-------------------------I------------------------ 201 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~~~~~~~~~~~-------------------------~------------------------ 201 (304)
++.++.+ +++||..+++.+..+.... .
T Consensus 161 l~~~~~~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 161 LYVAGPD----IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp EEEESSS----EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred EEEccCc----EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 5554433 4689988877655543221 0
Q ss_pred -----------------eeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 202 -----------------LFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 202 -----------------~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
...+..++++| +|++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence 00234667889 99999888 78999999999888777654 34578999999999888888
Q ss_pred cCCeeeeccccccc
Q psy4754 264 WDTTLRDEESKNRY 277 (304)
Q Consensus 264 ~D~~i~~~~~~~~~ 277 (304)
.|+.|++|+.....
T Consensus 314 ~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 314 TFNDLAVFNPDTLE 327 (349)
T ss_dssp BSSEEEEEETTTTE
T ss_pred CCCeEEEEeccccc
Confidence 89999999986543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-21 Score=168.12 Aligned_cols=263 Identities=11% Similarity=0.100 Sum_probs=173.9
Q ss_pred CceeEEeecc--ccceEeeeeccccccceeEEEEcCCCCEEEEeeCC----CcEEEEeCCC--ce--eeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLR--ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLK--CC--RVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~--~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d----g~v~iwd~~~--~~--~~~~~~~h~~~V~ 72 (304)
++.|.+|++. +++....... +......++|+|+|++|++++.+ +.|.+|++.. ++ .+.....+.....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC 103 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence 5678888764 4544332222 34447889999999999888876 8999998754 43 3344444556677
Q ss_pred EEEECCCCCeEEEEe-CCCceEEEEeeeCCCeeEeEE----eccc--------eeeceeeeEEcCCCCEEEEEe-CCCeE
Q psy4754 73 CLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACY----KKDS--------ILFGATSVDFSVSGRLLFAGY-NDYTI 138 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~----~~~~--------~~~~~~~~~~s~~~~~l~sg~-~dg~i 138 (304)
.+++ ++++|++++ .++++ .+|++.....+... .... ....+.+++|+|+++++++++ .++.|
T Consensus 104 ~~~~--dg~~l~~~~~~~~~v--~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v 179 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGSI--TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI 179 (361)
T ss_dssp EEEE--CSSEEEEEETTTTEE--EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEE--CCCEEEEEECCCCEE--EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence 7888 788777766 46664 78998654332111 1000 011235789999999776655 48999
Q ss_pred EEecCCcccc------c-------eeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCce--EEEeecC-ce
Q psy4754 139 NVWDSLKCCR------V-------NHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKE--VACYKKD-SI 201 (304)
Q Consensus 139 ~iwd~~~~~~------~-------~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~--~~~~~~~-~~ 201 (304)
.+|++..... + .....+...+..++|+||++++++++ .++.+ .+|++.+++. +...... ..
T Consensus 180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v--~v~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV--IAFRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE--EEEEEETTEEEEEEEEESCSSC
T ss_pred EEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE--EEEEecCCceEEeEEEecCCCC
Confidence 9998654331 1 11223445678999999999877766 57774 6899886543 2222211 11
Q ss_pred eeeeeEEEEcCCCCEEEEEeCC--CcEEEEeCC--Cce--eeEEeeccccceEEEEEccCCCEEEEee-cCCeeeecccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYND--YTINVWDSL--KCC--RVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRDEESK 274 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d--~~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~sp~g~~lasgs-~D~~i~~~~~~ 274 (304)
...+..++|+|+|++|+++..+ +.|.+|++. ++. .+..+.. ...+.+++|+|||++|++++ .++.|++|+.+
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 1234689999999998776654 889999985 333 3444444 45788999999999888877 67899997554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-22 Score=173.47 Aligned_cols=236 Identities=13% Similarity=0.087 Sum_probs=167.4
Q ss_pred EEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCee-EeEEe
Q psy4754 33 DFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE-VACYK 109 (304)
Q Consensus 33 ~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~-~~~~~ 109 (304)
.|.+++. .+++++.+++|.+||..+++....+..+...+ .++|+|++++|+.++. ++. +++||..+++. .....
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~--i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQT--LVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCE--EEEEECSSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCe--EEEEECCCCceeEEecc
Confidence 4555544 57889999999999999998887777666667 9999999997776665 666 57899987765 44443
Q ss_pred ccceeeceee-eEEcCCCCEEEEEeCCC---eEEEecCCccccceeccCcccceeEEEEcCCCcEEE-EeecCCc-eEEE
Q psy4754 110 KDSILFGATS-VDFSVSGRLLFAGYNDY---TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTT-LRCR 183 (304)
Q Consensus 110 ~~~~~~~~~~-~~~s~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~-i~i~ 183 (304)
... .... ++|+|++++++++..++ .|.+||+.+.+.+..+..+ ..+.+++|+|+++.++ +...++. + .
T Consensus 81 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i--~ 154 (331)
T 3u4y_A 81 EGQ---SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTV--R 154 (331)
T ss_dssp ECS---SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEE--E
T ss_pred cCC---CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceE--E
Confidence 322 2344 89999999999555443 8999999887766655443 4568999999998555 4455465 5 5
Q ss_pred EeeecCCceEEEee--cCceeeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCcee---eEEeeccccceEEEEEccCCC
Q psy4754 184 LFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCR---VNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 184 ~~d~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~~~~---~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+|++.....+.... .......+..++|+|+|+++++ +..++.|++||+.+++. +..+..+ ..+.+++|+|||+
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 78876533321111 0001123578999999996555 55688999999988877 7666644 6778999999999
Q ss_pred EEEE-eecCCeeeeccccccch
Q psy4754 258 AFSS-GSWDTTLRDEESKNRYM 278 (304)
Q Consensus 258 ~las-gs~D~~i~~~~~~~~~~ 278 (304)
+|+. ...++.|.+|+...+..
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCEEEEEECCCCce
Confidence 6654 44578899999866543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=201.12 Aligned_cols=280 Identities=11% Similarity=0.057 Sum_probs=202.8
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
+.+.++|....+.....+ ..+...+.++.|+++ .++++++.|++++||.... +...+.+..|. .+...+|+|||+
T Consensus 182 ~~~~~lw~~~~~~~~~~l--~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 182 GTRGKIWIEVNSGAFKKI--VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TTCCEEEEEEETTEEEEE--ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CCcCCEEEECCCCCeEEC--cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 456778865543333333 334455899999988 7777888999999998653 33445555554 356779999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccc---------eeeceeeeEEc-CCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDS---------ILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
.|+.++ |+. +++||+.. ..+..+..+. ....+..+.|+ |+++++++++ ++.+.+|+..+... ..
T Consensus 258 ~la~~~-~~~--i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~ 331 (1045)
T 1k32_A 258 RILFSK-GGS--IYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK 331 (1045)
T ss_dssp CEEEEE-TTE--EEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE
T ss_pred EEEEEe-CCE--EEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE
Confidence 998875 777 47899843 3333332211 01135789999 9999998887 88999999876543 34
Q ss_pred ccCccc-ceeEEEEcCCCcEEEEeecCCceEEE-EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy4754 152 LMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCR-LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229 (304)
Q Consensus 152 ~~~h~~-~v~~v~~sp~~~~las~s~d~~i~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iw 229 (304)
+..|.. .+..++|+ |++.++.++.+.. ++ +||+.+.+... +..+ ...+..++|+|+|++|++++.++.|++|
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~--l~~~~d~~~~~~~~-l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTREGD--FLGIYDYRTGKAEK-FEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEETTEE--EEEEEETTTCCEEE-CCCC--CCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEECCCc--eEEEEECCCCCceE-ecCC--ccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 567777 89999999 9999999887654 56 78887765432 2222 2356889999999999999999999999
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC----------eeeeccccccchhheeeccccCCc-eeEEEEEe
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT----------TLRDEESKNRYMQYLLRSRITKPT-QGLTVYFQ 298 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~----------~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 298 (304)
|+.+++......+|...+.+++|||||++|++++.+. .|++|+...+... .++.+. .-..+.|+
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-----~l~~~~~~~~~~~~s 480 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-----AATTENSHDYAPAFD 480 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-----ECSCSSSBEEEEEEC
T ss_pred ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE-----EeeCCCcccCCceEc
Confidence 9998887776778999999999999999999988754 8999998664321 222222 23457788
Q ss_pred cCCcc
Q psy4754 299 DRGRS 303 (304)
Q Consensus 299 ~~~~~ 303 (304)
|+|+.
T Consensus 481 pdG~~ 485 (1045)
T 1k32_A 481 ADSKN 485 (1045)
T ss_dssp TTSCE
T ss_pred CCCCE
Confidence 88764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-22 Score=171.87 Aligned_cols=225 Identities=16% Similarity=0.181 Sum_probs=156.0
Q ss_pred EEEEeeCCCcEEEEeCC-Cc--eeeeeecCCcCcEEEEEECCCCCeEEEEeCC-CceEEEEeeeC--CCe--eEeEEecc
Q psy4754 40 LLFAGYNDYTINVWDSL-KC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLR--ADK--EVACYKKD 111 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~-~~--~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D-~~i~~~~wd~~--~~~--~~~~~~~~ 111 (304)
++++++.|+.|++||+. ++ +.+.. ..|...+.+++|+|++++|++++.+ +.+ .+|++. .++ .+..+...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRV--LAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEE--EEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeE--EEEEecCCCCceeeccccccC
Confidence 45565889999999985 33 33333 3467788999999999999988876 664 789987 333 22223222
Q ss_pred ceeeceeeeEEcCCCCEEEEEeC-CCeEEEecC---CccccceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEee
Q psy4754 112 SILFGATSVDFSVSGRLLFAGYN-DYTINVWDS---LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFD 186 (304)
Q Consensus 112 ~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~---~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d 186 (304)
. .+..++|+|+++++++++. ++.|.+||+ .+...+..+..+ ..+.+++|+|+++.+++++ .++.+ .+||
T Consensus 84 ~---~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v--~~~d 157 (343)
T 1ri6_A 84 G---SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRI--CLFT 157 (343)
T ss_dssp S---CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEE--EEEE
T ss_pred C---CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEE--EEEE
Confidence 1 4568899999998877665 889999998 333344444333 4588999999999887776 77775 6899
Q ss_pred ecC-CceEE----EeecCceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCC--cee--eEEee----cc--ccceEEE
Q psy4754 187 LRA-DKEVA----CYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLK--CCR--VNHLM----GH--ENRVSCL 250 (304)
Q Consensus 187 ~~~-~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~--~~~--~~~~~----~h--~~~i~~l 250 (304)
+.+ ++... ...... ...+..++|+|+|++++++ ..++.|.+|++.. +.. +..+. ++ ...+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp ECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 987 44322 111111 1245789999999977655 4789999999843 322 22222 11 2357789
Q ss_pred EEccCCCEEE-EeecCCeeeecccc
Q psy4754 251 QVSPDGTAFS-SGSWDTTLRDEESK 274 (304)
Q Consensus 251 ~~sp~g~~la-sgs~D~~i~~~~~~ 274 (304)
+|+|+|++|+ +++.|+.|++|++.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEecCCCEEEEEEEc
Confidence 9999998776 55579999999986
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-23 Score=192.04 Aligned_cols=233 Identities=10% Similarity=-0.047 Sum_probs=168.0
Q ss_pred cceeEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEEEEeC---CCceEEEEeee--
Q psy4754 27 FGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSW---DTTLRCRLFDL-- 99 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~-dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~sgs~---D~~i~~~~wd~-- 99 (304)
..|.+++|+|||+.||.++. ||+++||++.+++..+ +..|. ..|..++|+|| +.+++++. +...+++.++.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 34899999999999998877 9999999986665544 44444 68999999999 78887765 44444444554
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCE-EEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC-
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD- 177 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d- 177 (304)
... .. .+.... ......|+|+++. +++...++.+.+||+.+++.. .+..+.. .+++|+|||+.+++++.|
T Consensus 100 ~g~-~~-~l~~~~---~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 100 PGE-EQ-RLEAVK---PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-ELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TTC-CE-ECTTSC---SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-EEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred CCc-cc-cccCCC---CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-EeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 222 22 222111 1234577888753 333344445559998766543 3333333 789999999999988876
Q ss_pred -CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCceeeEEeeccccceEEEE---
Q psy4754 178 -TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQ--- 251 (304)
Q Consensus 178 -~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~i~~l~--- 251 (304)
+...+++||+.+++... +..+. ..+..++|+|||++|+++..++ .|++||..+++.. .+.+|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~~-l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLRV-FDSGE--GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp TTEEEEEEEETTTCCCEE-ECCSS--CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CCCeEEEEEcCCCCCceE-eecCC--CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 21236799988776543 32222 2458899999999999888888 8999999888776 7778888888888
Q ss_pred -----EccCCCEEEEeecCCeeeeccc
Q psy4754 252 -----VSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 252 -----~sp~g~~lasgs~D~~i~~~~~ 273 (304)
|+|||..+++++.|+++++|+.
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999987
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=198.54 Aligned_cols=254 Identities=10% Similarity=0.051 Sum_probs=191.0
Q ss_pred CceeEEeeccc-cceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-----------CcCc
Q psy4754 3 KNHCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-----------HENR 70 (304)
Q Consensus 3 ~~~v~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-----------h~~~ 70 (304)
+++++||.... +.....+.. ...+.+.+|+|+|+.|+.+ .++.|.+||+... .+..+.+ |...
T Consensus 223 dg~~~l~~~~~~g~~~~~l~~---~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~ 297 (1045)
T 1k32_A 223 DGFGQIYSTDLDGKDLRKHTS---FTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPS 297 (1045)
T ss_dssp TSSCEEEEEETTSCSCEECCC---CCSSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGG
T ss_pred cCceEEEEEeCCCCcceEecC---CCCcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccc
Confidence 46788887654 222222211 1136678999999988887 5899999998443 3334444 4457
Q ss_pred EEEEEEC-CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEE-EecCCcccc
Q psy4754 71 VSCLQVS-PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN-VWDSLKCCR 148 (304)
Q Consensus 71 V~~l~~s-~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~-iwd~~~~~~ 148 (304)
+.+++|+ |||+.|++++ ++. +++|++....... +..+.. ..+..+.|+ +++.++.++.+..+. +||+.+...
T Consensus 298 v~~~~~S~pdG~~la~~~-~~~--i~~~~~~~~~~~~-~~~~~~-~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS-RGQ--AFIQDVSGTYVLK-VPEPLR-IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE-TTE--EEEECTTSSBEEE-CSCCSC-EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cceeeecCCCCCEEEEEE-cCE--EEEEcCCCCceEE-ccCCCc-ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence 8999999 9999999888 555 4789987665432 222111 135678899 999999998888888 999876543
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC----
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY---- 224 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~---- 224 (304)
..+.+|...+..++|+|||+.+++++.++.+ ++||+.+++.......+. ..+..++|+|||++|++++.++
T Consensus 372 -~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v--~~~d~~tg~~~~~~~~~~--~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 372 -EKFEENLGNVFAMGVDRNGKFAVVANDRFEI--MTVDLETGKPTVIERSRE--AMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp -EECCCCCCSEEEEEECTTSSEEEEEETTSEE--EEEETTTCCEEEEEECSS--SCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred -eEecCCccceeeeEECCCCCEEEEECCCCeE--EEEECCCCceEEeccCCC--CCccceEECCCCCeEEEEecCccccc
Confidence 3444788899999999999999999999875 699999887665553332 2457889999999998877644
Q ss_pred ------cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 225 ------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 225 ------~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.|++||+.+++ +..+..|...+.+++|+|||++|+.++.+...+.|+.
T Consensus 447 ~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred cCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 89999998876 6678889889999999999999999998888777753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=191.70 Aligned_cols=264 Identities=12% Similarity=0.035 Sum_probs=183.0
Q ss_pred CCceeEEeeccccceEeeeecccc-ccceeEEEEcCCCCEEEEeeC---------CCcEEEEeCCCceee--eeecCCcC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYN---------DYTINVWDSLKCCRV--NHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~l~tg~~---------dg~v~iwd~~~~~~~--~~~~~h~~ 69 (304)
.|++|++||+.++++......... ...+.+++|||||++|+.++. +++|++||+.+++.+ ..+ ..
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~ 110 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PR 110 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CS
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Cc
Confidence 478999999999987655442211 113889999999999998876 799999999988763 223 25
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce--ee--------------ceeeeEEcCCCCEEEEEe
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI--LF--------------GATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~--~~--------------~~~~~~~s~~~~~l~sg~ 133 (304)
.+..++|||||+.|+.++ |+. +++||+.+++.......... .. ....+.|||||++|++++
T Consensus 111 ~~~~~~~SPDG~~la~~~-~~~--i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 111 PIQYLCWSPVGSKLAYVY-QNN--IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp SBCCEEECSSTTCEEEEE-TTE--EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred ccccceECCCCCEEEEEE-CCe--EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 688899999999999986 666 57999987655432111100 00 014789999999999987
Q ss_pred CCC----------------------------------eEEEecCCccccc--------eeccCcccceeEEEEcCCCcEE
Q psy4754 134 NDY----------------------------------TINVWDSLKCCRV--------NHLMGHENRVSCLQVSPDGTAF 171 (304)
Q Consensus 134 ~dg----------------------------------~i~iwd~~~~~~~--------~~~~~h~~~v~~v~~sp~~~~l 171 (304)
.|. .|++||+.+++.. ..+.+|...+..++|+||++++
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~ 267 (719)
T 1z68_A 188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC 267 (719)
T ss_dssp EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE
T ss_pred ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE
Confidence 542 7889998876542 2244688899999999998877
Q ss_pred EEee--cCCceEEEEee----ecCCceEEEee----cCceeeeee-----EEEEcCCCCEEEE--EeCCC--cEEEEeCC
Q psy4754 172 SSGS--WDTTLRCRLFD----LRADKEVACYK----KDSILFGAT-----SVDFSVSGRLLFA--GYNDY--TINVWDSL 232 (304)
Q Consensus 172 as~s--~d~~i~i~~~d----~~~~~~~~~~~----~~~~~~~~~-----~~~~s~~g~~l~s--g~~d~--~i~iwd~~ 232 (304)
++.. .+....+++|| +.+++...... .+. ..+. .+.|+|||+.|+. ...++ .|.+||..
T Consensus 268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence 7644 33445568899 66655433221 111 1122 6789999996554 44555 46667876
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecC-----Ceeeeccccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-----TTLRDEESKN 275 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D-----~~i~~~~~~~ 275 (304)
+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|....
T Consensus 346 ~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 346 VEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp STT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 654 45566666678888888 88877766654 7889997643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-22 Score=178.84 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=149.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce----------eee-----eecCCcCcEEEEEECCCCCeEE----EEeC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----------RVN-----HLMGHENRVSCLQVSPDGTAFS----SGSW 88 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~----------~~~-----~~~~h~~~V~~l~~s~d~~~l~----sgs~ 88 (304)
.++.+++++++.++++|+.|+ +++|+..... .+. ....|...|.+++|+|++++|+ +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 478899999999999999998 9998853210 000 1123567899999999999999 8889
Q ss_pred CCceEEEEeeeCCC--------eeEeEEec-cceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 89 DTTLRCRLFDLRAD--------KEVACYKK-DSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 89 D~~i~~~~wd~~~~--------~~~~~~~~-~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
|+++ ++||+.+. +.+..+.. ..+...+.+++|+|+ +.++++++.||+|++||+++........+|...
T Consensus 117 d~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 117 GSII--AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp EEEE--EEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CceE--EEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 9985 78998653 22111111 111234789999998 789999999999999999887666666789999
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-----ceeeeeeEEEEcCCCCEEEE-EeCCC------cE
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----SILFGATSVDFSVSGRLLFA-GYNDY------TI 226 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~l~s-g~~d~------~i 226 (304)
|.+++|+|+++.|++|+.|+++ ++||.+ ++....+..+ .....+.+++|++++.++++ ...+| .+
T Consensus 195 v~~v~wspdg~~lasgs~dg~v--~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTV--VQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCE--EEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcE--EEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 9999999999999999999996 689998 3444433222 11236789999999988866 33443 38
Q ss_pred EEEeCCCc
Q psy4754 227 NVWDSLKC 234 (304)
Q Consensus 227 ~iwd~~~~ 234 (304)
++|++.+.
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 89998754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-21 Score=178.69 Aligned_cols=248 Identities=13% Similarity=0.033 Sum_probs=177.1
Q ss_pred CceeEEeeccccceEeeeeccccc-cceeEEEEcCCCCEEEEeeC---CCcEEEEeCCC---ceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSIL-FGATSVDFSVSGRLLFAGYN---DYTINVWDSLK---CCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~-~~i~~~~~~~~g~~l~tg~~---dg~v~iwd~~~---~~~~~~~~~h~~~V~~l~ 75 (304)
|++++||++.+++.... ..+. ..+.+++|+|| +++++++. +...++|.+.. +... .+..+ ..+...+
T Consensus 43 ~g~~~lw~~~~g~~~~l---t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~ 116 (582)
T 3o4h_A 43 EGSVNAYLYDGGETVKL---NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILS 116 (582)
T ss_dssp TTEEEEEEEETTEEEEC---CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEE
T ss_pred CCceeEEEEcCCCcEee---ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeee
Confidence 78899999977755332 2222 35899999999 88887775 55667765432 2222 23222 2334568
Q ss_pred ECCCCC--eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccc
Q psy4754 76 VSPDGT--AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRV 149 (304)
Q Consensus 76 ~s~d~~--~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~ 149 (304)
|+||++ .+++++.|+. .+||+.+++......... .++.|+|||+++++++.+ +.|++||+.+++.
T Consensus 117 ~s~dg~~~~~~s~~~~~~---~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~- 187 (582)
T 3o4h_A 117 GVDTGEAVVFTGATEDRV---ALYALDGGGLRELARLPG-----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL- 187 (582)
T ss_dssp EEECSSCEEEEEECSSCE---EEEEEETTEEEEEEEESS-----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred eCCCCCeEEEEecCCCCc---eEEEccCCcEEEeecCCC-----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence 888875 4555555654 489998776544333221 578899999999988776 7899999877653
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEE--------EcCCCCEEEEEe
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD--------FSVSGRLLFAGY 221 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~s~~g~~l~sg~ 221 (304)
..+..|...+..++|+|||+.++++..++...+++||+.+++.. ....+. ..+..++ |+|||.++++++
T Consensus 188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFSSYRPTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChhhhhhccccceeEcCCCcEEEEEE
Confidence 46778888999999999999999888888545689999887765 433322 1233344 999999999999
Q ss_pred CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe---eeecccc
Q psy4754 222 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRDEESK 274 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~---i~~~~~~ 274 (304)
.|+++++|++ ++.+. .+.+.|.+++|+ +++.+++++.+.+ +.+++..
T Consensus 265 ~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 265 REGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 9999999998 55443 345789999999 9999999888855 5566543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-21 Score=163.61 Aligned_cols=249 Identities=12% Similarity=0.033 Sum_probs=176.2
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCc-C-cEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccc---
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHE-N-RVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDS--- 112 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-~-~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~--- 112 (304)
+++++++.+++|.+||+.+++.+..+.... . .+..++|+|+++.+ ++++.++. +++||+.+.+.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~--v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSES--LVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTE--EEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCe--EEEEECCCCCeEeeEEcCCccc
Confidence 578999999999999999998887765322 2 47889999999865 45555667 4789998887766554321
Q ss_pred eeeceeeeEEcCCCCEEEEEe------------CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 113 ILFGATSVDFSVSGRLLFAGY------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 113 ~~~~~~~~~~s~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
....+..++|+|++++++++. .++.|.+||+.+.+.+..+.. ...+.+++|+|+++.++++ ++.+
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence 011345789999999998886 579999999987766555443 3567889999999988877 4664
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-C-----------------------cEEEEeCCCcee
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-Y-----------------------TINVWDSLKCCR 236 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-~-----------------------~i~iwd~~~~~~ 236 (304)
.+||+.+++....+...... ..+.|+|+|++++....+ + .|.+||..+++.
T Consensus 157 --~~~d~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 157 --HVMDPEAGTLVEDKPIQSWE---AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp --EEEETTTTEEEEEECSTTTT---TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred --EEEECCCCcEeeeeeccccC---CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 68999988776655433211 122688998876554432 2 468999988765
Q ss_pred e-EEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 237 V-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 237 ~-~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
. ..+..|...+.+++|+|||++++++ |+.|++|++..+...... ..+.....+.++|+|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSCE
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee----cCCCceeeEEECCCCCE
Confidence 4 2244566788999999999999988 799999998654322221 12223445677777653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=162.28 Aligned_cols=226 Identities=16% Similarity=0.100 Sum_probs=165.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCC------cCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGH------ENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h------~~~V~~l 74 (304)
++++|++||+.+++....+.... ...+..++|+|+|+.+ +++..++.|.+||+.+++....+..+ ...+..+
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~ 97 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF 97 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred CCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccce
Confidence 47899999999998776655332 1247889999999855 56667899999999998877666532 2337789
Q ss_pred EECCCCCeEEEEeCC------------CceEEEEeeeCCCee---EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEE
Q psy4754 75 QVSPDGTAFSSGSWD------------TTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 139 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D------------~~i~~~~wd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~ 139 (304)
+|+|||++|++++.+ +. +.+||+.+++. +..+... ..+.+++|+|+++ ++.++ +.|.
T Consensus 98 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-l~~~~--~~i~ 169 (349)
T 1jmx_B 98 AISPDGKEVYATVNPTQRLNDHYVVKPPR--LEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-LYVAG--PDIY 169 (349)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-EEEES--SSEE
T ss_pred EECCCCCEEEEEcccccccccccccCCCe--EEEEECCCccccceeeeccCC---CcccceeECCCCc-EEEcc--CcEE
Confidence 999999999988865 65 57899876332 2222222 1356788999999 66554 3499
Q ss_pred EecCCccccceeccCcc---------------------------------------------------------------
Q psy4754 140 VWDSLKCCRVNHLMGHE--------------------------------------------------------------- 156 (304)
Q Consensus 140 iwd~~~~~~~~~~~~h~--------------------------------------------------------------- 156 (304)
+||..+++.+..+..+.
T Consensus 170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 249 (349)
T ss_dssp EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence 99988766544332211
Q ss_pred -----cceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 157 -----NRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 157 -----~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
..+..++|+| +++.++++ ++.+ .+||+.+.+.+..+.... .+..++|+|+|++|++++.++.|++||
T Consensus 250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v--~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 250 FADLTELYFTGLRSPKDPNQIYGV--LNRL--AKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp EEECSSCEEEEEECSSCTTEEEEE--ESEE--EEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred cccCCCcceeeEecCCCCCEEEEE--cCeE--EEEECccCeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEe
Confidence 1345677889 99998887 6664 689999887766665432 357899999999988888889999999
Q ss_pred CCCceeeEEeecc
Q psy4754 231 SLKCCRVNHLMGH 243 (304)
Q Consensus 231 ~~~~~~~~~~~~h 243 (304)
..+++.+..+..+
T Consensus 323 ~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 323 PDTLEKVKNIKLP 335 (349)
T ss_dssp TTTTEEEEEEECS
T ss_pred ccccceeeeeecC
Confidence 9998888776544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-20 Score=163.22 Aligned_cols=267 Identities=9% Similarity=-0.021 Sum_probs=172.9
Q ss_pred ceeEEeec--cccceEeeeecc-ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC-Cceeeeeec--CCcCcEEEEEEC
Q psy4754 4 NHCRLFDL--RADKEVACYKKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRVNHLM--GHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~--~~~~~~~~~~~~-~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~-~~~~~~~~~--~h~~~V~~l~~s 77 (304)
+.|.+|++ .+++........ .....+..++|+|+|++|++++.+ .|.+|++. +++...... .+ +.+..++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC
Confidence 35777664 455432211111 112247889999999999988888 99999986 676543222 11 234568999
Q ss_pred CCCCe--EEEEe-------------CCCceEEEEeeeCC-CeeEeEEec--cceeeceeeeEEcCCCCEEEEEeC-CCeE
Q psy4754 78 PDGTA--FSSGS-------------WDTTLRCRLFDLRA-DKEVACYKK--DSILFGATSVDFSVSGRLLFAGYN-DYTI 138 (304)
Q Consensus 78 ~d~~~--l~sgs-------------~D~~i~~~~wd~~~-~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~sg~~-dg~i 138 (304)
|||++ ++++. .++++ .+|++.. ++....... ......+..++|+|++++++++.. ++.|
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v--~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v 169 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYG--NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL 169 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEE--EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceE--EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEE
Confidence 99994 55553 57775 6899863 433322221 001123578999999998887764 6899
Q ss_pred EEecCC-cccc--ceecc--CcccceeEEEEcCCCcEEEEeec-CCceEEEEeeec--CCceE---EEeec---Cc-eee
Q psy4754 139 NVWDSL-KCCR--VNHLM--GHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLR--ADKEV---ACYKK---DS-ILF 203 (304)
Q Consensus 139 ~iwd~~-~~~~--~~~~~--~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~--~~~~~---~~~~~---~~-~~~ 203 (304)
.+||+. +++. +..+. .|...+..++|+|||+++++++. ++.+ .+|++. +++.. ..+.. .. ...
T Consensus 170 ~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v--~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 170 WTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI--CEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE--EEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE--EEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 999987 4432 22222 24567899999999998887775 5665 466553 44432 11211 10 001
Q ss_pred -------eeeEEE-EcCCCCEEEEEeCC-C-----cEEEEeCC-CceeeE---EeeccccceEEEEEcc---CCCEEEEe
Q psy4754 204 -------GATSVD-FSVSGRLLFAGYND-Y-----TINVWDSL-KCCRVN---HLMGHENRVSCLQVSP---DGTAFSSG 262 (304)
Q Consensus 204 -------~~~~~~-~s~~g~~l~sg~~d-~-----~i~iwd~~-~~~~~~---~~~~h~~~i~~l~~sp---~g~~lasg 262 (304)
.+..++ |+|||++|+++..+ . +|.+|++. +++... ....+...+..++|+| ||++|+++
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT 327 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence 367899 99999988776543 2 89999985 454332 1333555677899999 89999988
Q ss_pred ecC-Ceeeecccccc
Q psy4754 263 SWD-TTLRDEESKNR 276 (304)
Q Consensus 263 s~D-~~i~~~~~~~~ 276 (304)
+.+ ++|++|+.+.+
T Consensus 328 ~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 328 DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSSCEEEEEEEETT
T ss_pred EcCCCeEEEEEEchh
Confidence 765 89999988765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-19 Score=156.89 Aligned_cols=251 Identities=12% Similarity=0.048 Sum_probs=156.0
Q ss_pred CCCcEEEEeCC--Cceeee-eecCCcCcEEEEEECCCCCeEEEEeC---CCceEEEEeeeCCCeeEeEEeccceeeceee
Q psy4754 46 NDYTINVWDSL--KCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSW---DTTLRCRLFDLRADKEVACYKKDSILFGATS 119 (304)
Q Consensus 46 ~dg~v~iwd~~--~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~---D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~ 119 (304)
.++.|.+|++. +++... ....+...+..++|+|||+ |++++. ++. +++||+..++.............+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~--v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGG--IAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEE--EEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCce--EEEEEecCCcEEEeeeeecCCCCCEE
Confidence 45667777654 454332 2334556677899999999 555544 455 57899966543221111111223567
Q ss_pred eEEcCCCCEEEEEe-CCCeEEEecCCcc---ccceeccC---------cccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 120 VDFSVSGRLLFAGY-NDYTINVWDSLKC---CRVNHLMG---------HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 120 ~~~s~~~~~l~sg~-~dg~i~iwd~~~~---~~~~~~~~---------h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
++|+|+++++++++ .++.|.+|++... ..+..+.. +...+.+++|+|+++.+++...++.+ ++|+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v--~~~~ 168 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV--YVYN 168 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE--EEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE--EEEE
Confidence 89999999988887 6899999998532 22222211 12347889999999966666667764 6899
Q ss_pred ec-CCceEEE--eecCceeeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCC--cee--eEEeeccc------cceEEEEE
Q psy4754 187 LR-ADKEVAC--YKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLK--CCR--VNHLMGHE------NRVSCLQV 252 (304)
Q Consensus 187 ~~-~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~--~~~--~~~~~~h~------~~i~~l~~ 252 (304)
+. +++.... +.... ...+..++|+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+..++|
T Consensus 169 ~~~~g~~~~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL 247 (347)
T ss_dssp ECTTSCEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE
T ss_pred ECCCCcEEEeeeEEcCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE
Confidence 87 4432211 11111 123567999999996655 56678999998763 432 23333322 45889999
Q ss_pred ccCCCEE-EEeecCCeeeeccccccchhheeeccccC-CceeEEEEEecCCcc
Q psy4754 253 SPDGTAF-SSGSWDTTLRDEESKNRYMQYLLRSRITK-PTQGLTVYFQDRGRS 303 (304)
Q Consensus 253 sp~g~~l-asgs~D~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 303 (304)
+|||++| ++...++.|++|++......... ..... ....-.++|+|+|+.
T Consensus 248 spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~-~~~~~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 248 SHDGHFLYVSNRGYNTLAVFAVTADGHLTLI-QQISTEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp CTTSCEEEEEEETTTEEEEEEECGGGCEEEE-EEEECSSSCCCEEEECTTSSE
T ss_pred CCCCCEEEEEeCCCCEEEEEEECCCCcEEEe-EEEecCCCCcCeEEECCCCCE
Confidence 9999977 56677999999998643211111 11111 222456778888764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-21 Score=170.64 Aligned_cols=213 Identities=15% Similarity=0.061 Sum_probs=154.2
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC----------eeEeEEecc---cee
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD----------KEVACYKKD---SIL 114 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~----------~~~~~~~~~---~~~ 114 (304)
+.+++|+.... .+...+..+++++++.++++++.|+ + ++|+.... ..+...... ...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-L--QIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-E--EEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-E--EEEEchHhhhhcccccCcccccccCccccccCC
Confidence 46888875321 1344578899999999999999887 4 56654311 011100000 001
Q ss_pred eceeeeEEcCCCCEEE----EEeCCCeEEEecCCcc--------cc---ceeccCcccceeEEEEcCC-CcEEEEeecCC
Q psy4754 115 FGATSVDFSVSGRLLF----AGYNDYTINVWDSLKC--------CR---VNHLMGHENRVSCLQVSPD-GTAFSSGSWDT 178 (304)
Q Consensus 115 ~~~~~~~~s~~~~~l~----sg~~dg~i~iwd~~~~--------~~---~~~~~~h~~~v~~v~~sp~-~~~las~s~d~ 178 (304)
..+.+++|++++++|+ +|+.|+.|++||+.+. +. +..+.+|...|.+++|+|+ ++.|++++.|+
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 1367899999999999 7888999999997654 11 3456689999999999998 78999999999
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-------ccceEEEE
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------ENRVSCLQ 251 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------~~~i~~l~ 251 (304)
++ ++||+++.........+. ..+.+++|+|+|++|++|+.|++|++||.. ++....+..| ...|.+++
T Consensus 173 ~v--~iwD~~~~~~~~~~~~~~--~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 173 SI--AVLQVTETVKVCATLPST--VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp CE--EEEEESSSEEEEEEECGG--GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred eE--EEEEcCCCcceeeccCCC--CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence 96 699999876544433322 357999999999999999999999999987 4455555444 33899999
Q ss_pred EccCCCEEEEe-ecCCe------eeeccccc
Q psy4754 252 VSPDGTAFSSG-SWDTT------LRDEESKN 275 (304)
Q Consensus 252 ~sp~g~~lasg-s~D~~------i~~~~~~~ 275 (304)
|++++.++++. +.|+. +++|++.+
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 99998887653 34433 77887764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=185.31 Aligned_cols=239 Identities=14% Similarity=0.066 Sum_probs=164.8
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC---cEEEEEECCCCCeEEEEeC---------CCceEEEEe
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN---RVSCLQVSPDGTAFSSGSW---------DTTLRCRLF 97 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~d~~~l~sgs~---------D~~i~~~~w 97 (304)
..++|+|+|++++++ .|++|++||+.+++....+.+|.. .|.+++|||||++|++++. |++ +++|
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~--i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT--YYIY 95 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE--EEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE--EEEE
Confidence 368999999766655 699999999999887666655543 4899999999999998876 556 5899
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee-ccCcccce-----------------
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRV----------------- 159 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v----------------- 159 (304)
|+.+++.+...+. ...+..+.|||||+.++.+. ++.|++||+.+++.... ..++...|
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred ECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 9988765210011 12356789999999999886 78999999877654322 12332222
Q ss_pred eEEEEcCCCcEEEEeecCC--------------------------------ceEEEEeeecCCceE--EEeec----Cce
Q psy4754 160 SCLQVSPDGTAFSSGSWDT--------------------------------TLRCRLFDLRADKEV--ACYKK----DSI 201 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~--------------------------------~i~i~~~d~~~~~~~--~~~~~----~~~ 201 (304)
.+++|||||+.|++++.|. ...+++||+.+++.. ..+.. ...
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999988653 124578998776532 11110 011
Q ss_pred eeeeeEEEEcCCCCEEEEEeCC----CcEEEEe----CCCceeeEEe----eccccceE-----EEEEccCCCEEEE--e
Q psy4754 202 LFGATSVDFSVSGRLLFAGYND----YTINVWD----SLKCCRVNHL----MGHENRVS-----CLQVSPDGTAFSS--G 262 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d----~~i~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~sp~g~~las--g 262 (304)
...+..++|+||++++++.... ..|.+|| ..+++....+ .+|...+. .++|+|||+.|+. +
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 2346889999999887775432 2488899 7777655444 46777777 8999999996554 4
Q ss_pred ecCCe--eeeccccc
Q psy4754 263 SWDTT--LRDEESKN 275 (304)
Q Consensus 263 s~D~~--i~~~~~~~ 275 (304)
..|+. |.+|+...
T Consensus 332 ~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 332 DKDGYKHIHYIKDTV 346 (719)
T ss_dssp CTTSCEEEEEESSCS
T ss_pred ccCCceEEEEEECCC
Confidence 45554 55555543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=157.13 Aligned_cols=243 Identities=13% Similarity=0.080 Sum_probs=179.2
Q ss_pred ceeEEEEcCCCCEEEEeeCC------------------------CcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCe
Q psy4754 28 GATSVDFSVSGRLLFAGYND------------------------YTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTA 82 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~d------------------------g~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~ 82 (304)
.+.+++++|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....+++.++|++
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l 104 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY 104 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence 48999999999999988877 579999998888776554 45567889999999998
Q ss_pred EEEEeCCCceEEEEeeeCCCe-eEeEEec-------cceeeceeeeEEcC-CCCEEEEEe-CCCeEEEecCCccccceec
Q psy4754 83 FSSGSWDTTLRCRLFDLRADK-EVACYKK-------DSILFGATSVDFSV-SGRLLFAGY-NDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~-~~~~~~~-------~~~~~~~~~~~~s~-~~~~l~sg~-~dg~i~iwd~~~~~~~~~~ 152 (304)
+++...++.| +.||..... .+..+.. .........++++| ++..+++.+ .++.|++|| .++..+..+
T Consensus 105 ~v~d~~~~~v--~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 105 WVTDVALHQV--FKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp EEEETTTTEE--EEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred EEEECCCCEE--EEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 8888877774 678875432 3333321 11222457899999 777777775 689999999 444444444
Q ss_pred c----------CcccceeEEEEcCC-CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC------CCC
Q psy4754 153 M----------GHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV------SGR 215 (304)
Q Consensus 153 ~----------~h~~~v~~v~~sp~-~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~------~g~ 215 (304)
. ++...+..|+++|+ ++++++...++.| ++||..+++.+..+........+..++|+| +|+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I--~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI--QCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE--EEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE--EEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 2 23345889999998 7777777777775 689988777776664332223456888899 333
Q ss_pred EEEEEeCCCcEEEEeCCCceeeEEe---eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 216 LLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 216 ~l~sg~~d~~i~iwd~~~~~~~~~~---~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.+++...+.+|++|+..+++.+..+ .++...+..|+++|+|..+++.+.++.|+.|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333334558999999999888877 36777899999999999999999999999998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=164.11 Aligned_cols=269 Identities=14% Similarity=-0.012 Sum_probs=175.3
Q ss_pred EEeeccccceEeeeeccccccceeE-----EEEcCCCCEEEEeeC-CCc--EEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 7 RLFDLRADKEVACYKKDSILFGATS-----VDFSVSGRLLFAGYN-DYT--INVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 7 ~~wd~~~~~~~~~~~~~~~~~~i~~-----~~~~~~g~~l~tg~~-dg~--v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
...|..++.++..+..+ ...... .+|+|||+.|+.++. +|. |.+||+.+++......+|...+..++|+|
T Consensus 13 ~~~~~~~g~~~~~lt~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPP--DVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EEECTTTCCEEEECSCT--TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred EEecCCCCcceEEecCC--cccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence 45677777766554432 222333 789999998888877 674 88889988887766666766666778999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE----------------------eCCC
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG----------------------YNDY 136 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg----------------------~~dg 136 (304)
||+.|+.++.++.+ ++||+.+++..................+++++.+++.. ..+.
T Consensus 91 dg~~l~~~~~~~~l--~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 91 DDDALFYVKDGRNL--MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp TSSEEEEEETTTEE--EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CCCEEEEEeCCCeE--EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 99999999988774 78999887766554433221111223458999888743 2457
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEeecCC----ceEEEEeeecCCceEEEeecCceeeeeeEEEEc
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDT----TLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~----~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 211 (304)
.|.+||+.+++ ...+..+...+..+.|+| |++.++.++.+. ...++++|..+.+... +........+..++|+
T Consensus 169 ~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 169 RLMRVDLKTGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEETTTCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEEC
T ss_pred eEEEEECCCCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceEC
Confidence 89999988764 344556667889999999 999888777542 2335677766544322 2222111235678899
Q ss_pred CCCCEEEEEeC-CC----cEEEEeCCCcee--eEEeeccccc---eEEEEEccCCCEEEEe---------ecCCeeeecc
Q psy4754 212 VSGRLLFAGYN-DY----TINVWDSLKCCR--VNHLMGHENR---VSCLQVSPDGTAFSSG---------SWDTTLRDEE 272 (304)
Q Consensus 212 ~~g~~l~sg~~-d~----~i~iwd~~~~~~--~~~~~~h~~~---i~~l~~sp~g~~lasg---------s~D~~i~~~~ 272 (304)
|||+.|+..+. ++ .|.+||+.+++. +..+.++... ...++|+|||+.|+.. ..+..|.+|+
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99997765432 22 399999988763 3333331111 1223799999988854 4466899999
Q ss_pred ccccchhhe
Q psy4754 273 SKNRYMQYL 281 (304)
Q Consensus 273 ~~~~~~~~~ 281 (304)
+..+....+
T Consensus 327 ~~~~~~~~l 335 (388)
T 3pe7_A 327 MKNGTQHRV 335 (388)
T ss_dssp TTTTEEEEE
T ss_pred ccCCceEEe
Confidence 876554333
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-19 Score=155.02 Aligned_cols=283 Identities=14% Similarity=0.091 Sum_probs=190.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC----
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH---- 67 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h---- 67 (304)
.|++|.+||..+++....++.. ..- .++|+|||++++++. .+++|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g---~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTA---FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECC---EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEecCC---CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 3679999999999877655432 123 899999999988876 3678999999988877766432
Q ss_pred --cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeE-EeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEe
Q psy4754 68 --ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVW 141 (304)
Q Consensus 68 --~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iw 141 (304)
......++++|||++|+.+.. +++ +.+||+.+.+.+.. +.... ...+.+.|++ ..+++.+.||.+.+|
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~--v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATS--IGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEE--EEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCe--EEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEE
Confidence 244567899999999998875 455 57899998877654 33211 1224456654 567788889999998
Q ss_pred cCCc-cccc------eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce--EEEeecCc--------eeee
Q psy4754 142 DSLK-CCRV------NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE--VACYKKDS--------ILFG 204 (304)
Q Consensus 142 d~~~-~~~~------~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~--------~~~~ 204 (304)
+... ++.. ..+..+..+ ..+.++|++..++..+.++.+ .++|+...+. ...+.... ....
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v--~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNV--YSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEE--EEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeE--EEEEecCCCceecccccccCccccccccccCC
Confidence 8654 2222 111112222 233446777777777778774 6788765432 11211100 0111
Q ss_pred eeEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 205 ATSVDFSVSGRLLFAGYN-----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~-----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
...++|+|+++.+.++.. ..+|.+||..+++.+.++..+. +.+++|+|||++|+++.. ++|.+||.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 123689999887766543 3479999999999999998877 899999999999998876 99999987
Q ss_pred cccchhheeeccc-cCCceeEEEEEecCCc
Q psy4754 274 KNRYMQYLLRSRI-TKPTQGLTVYFQDRGR 302 (304)
Q Consensus 274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 302 (304)
....++ .. .++ .-...+-.+.+.|+|+
T Consensus 333 ~t~~l~-~~-~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 333 SQPEPK-LL-RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSSCE-EE-EEETTSCSSEEEEEECCCSC
T ss_pred CCCcce-ee-EEeccCCCCcEEEEecCCCC
Confidence 665211 11 332 3345567789999885
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-18 Score=145.78 Aligned_cols=237 Identities=12% Similarity=0.136 Sum_probs=172.5
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec------CCcCcEEEEEE-CCCCCeEEEEeC-CCceEEEEeee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM------GHENRVSCLQV-SPDGTAFSSGSW-DTTLRCRLFDL 99 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~------~h~~~V~~l~~-s~d~~~l~sgs~-D~~i~~~~wd~ 99 (304)
...+++++++|.++++...++.|.+||.. ++.+..+. +|...+..+++ .++++++++... ++. +.+||
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~--i~~~d- 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ--IQIYN- 106 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE--EEEEC-
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE--EEEEC-
Confidence 37899999999999998899999999987 55554442 34467889999 577777777643 666 46888
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc--CcccceeEEEEcCCCcEEEEeecC
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~d 177 (304)
.+++.+..+.... ...+..++++++++.+++...++.|.+||.. ++.+..+. ++...+.+++++|+++++++.+.+
T Consensus 107 ~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp TTSCEEEEECTTT-CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred CCCcEEEEecCcc-CCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 4555555443221 1235688999999877777778999999954 33333332 445578999999999988887777
Q ss_pred CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCceeeEEeeccc--cceEEEEEcc
Q psy4754 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHE--NRVSCLQVSP 254 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-~i~iwd~~~~~~~~~~~~h~--~~i~~l~~sp 254 (304)
+.| ++||... +.+..+........+..++++|+|+++++...++ .|.+||. +++.+..+..+. ..+.+++++|
T Consensus 185 ~~i--~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 185 HCV--KVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp TEE--EEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred CEE--EEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence 775 6888743 4444443332223467899999999999888776 9999995 456666666553 3478999999
Q ss_pred CCCEEEEeecCCeeeeccccc
Q psy4754 255 DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~~~~~ 275 (304)
+|+.+++ +.|++|++|++..
T Consensus 261 ~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TTEEEEE-ETTTEEEEEECSC
T ss_pred CCcEEEE-CCCCeEEEEEccc
Confidence 9998888 5799999998643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=178.16 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=166.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCc-----EEEEEECCCCCeEEEEeCCCce-------EEEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-----VSCLQVSPDGTAFSSGSWDTTL-------RCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~-----V~~l~~s~d~~~l~sgs~D~~i-------~~~~ 96 (304)
..+++|+|||++++++ ||+|++||+.+++....+.+|... ...++|||||++|+.++.+.++ .+++
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 5679999999999886 999999999999877767776543 2347899999999998876442 2468
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce-eccCcccce----------------
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRV---------------- 159 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v---------------- 159 (304)
||+.+++... +... ...+...+|||||+.+|.+. ++.|++||+.++.... +..++...+
T Consensus 97 ~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 97 YDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 9998876543 2211 12356889999999998885 6899999987655332 222333222
Q ss_pred -eEEEEcCCCcEEEEeecCCc----------------------------------eEEEEeeecC---Cc--eEEEeecC
Q psy4754 160 -SCLQVSPDGTAFSSGSWDTT----------------------------------LRCRLFDLRA---DK--EVACYKKD 199 (304)
Q Consensus 160 -~~v~~sp~~~~las~s~d~~----------------------------------i~i~~~d~~~---~~--~~~~~~~~ 199 (304)
..+.|||||+.||..+.|.+ +.+++||+.+ ++ ....+...
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 35899999999998864433 3467788877 52 11222110
Q ss_pred ----ceeeeeeEEEEcCCCCEEEEEeC----CCcEEEEeCCCce----e--eEEe--eccccceE-----EEEEccCCCE
Q psy4754 200 ----SILFGATSVDFSVSGRLLFAGYN----DYTINVWDSLKCC----R--VNHL--MGHENRVS-----CLQVSPDGTA 258 (304)
Q Consensus 200 ----~~~~~~~~~~~s~~g~~l~sg~~----d~~i~iwd~~~~~----~--~~~~--~~h~~~i~-----~l~~sp~g~~ 258 (304)
.....+..++|+|||+.++.... +..|.+||..+++ + +..+ .+|..+|. ..+|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 01234678999999997766432 2369999988765 1 2222 45766665 7899999998
Q ss_pred EE-Eeec-C--Ceeeeccccccc
Q psy4754 259 FS-SGSW-D--TTLRDEESKNRY 277 (304)
Q Consensus 259 la-sgs~-D--~~i~~~~~~~~~ 277 (304)
|+ ..|. | ..|.+|+...+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS
T ss_pred EEEEEEcCCCceEEEEEECCCCc
Confidence 87 6664 3 356677665444
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-18 Score=149.74 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=152.9
Q ss_pred eCCCcEEEEeC--CCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC----CceEEEEeeeCC--CeeEeEEeccceeec
Q psy4754 45 YNDYTINVWDS--LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD----TTLRCRLFDLRA--DKEVACYKKDSILFG 116 (304)
Q Consensus 45 ~~dg~v~iwd~--~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D----~~i~~~~wd~~~--~~~~~~~~~~~~~~~ 116 (304)
+.++.|.+|++ .+++.......+...+..++|+|||++|++++.+ +.+ .+|++.. +..............
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v--~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAV--SAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEE--EEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcE--EEEEEeCCCCcEEEeeEeccCCCC
Confidence 45678999976 4454322111166777889999999999999886 564 6777754 322111111101112
Q ss_pred eeeeEEcCCCCEEEEEe-CCCeEEEecCCccccceec------c--------CcccceeEEEEcCCCcEEEEee-cCCce
Q psy4754 117 ATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHL------M--------GHENRVSCLQVSPDGTAFSSGS-WDTTL 180 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~------~--------~h~~~v~~v~~sp~~~~las~s-~d~~i 180 (304)
...+++ +++++++++ .++.|.+|++.....+... . .+...+.+++|+|+++.++.++ .++.+
T Consensus 102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v 179 (361)
T 3scy_A 102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI 179 (361)
T ss_dssp EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence 345555 788777766 5889999998654332211 1 1123457899999999666554 46664
Q ss_pred EEEEeeecCCce------E------EEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCcee--eEEee---c
Q psy4754 181 RCRLFDLRADKE------V------ACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCR--VNHLM---G 242 (304)
Q Consensus 181 ~i~~~d~~~~~~------~------~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~--~~~~~---~ 242 (304)
++|++..... + ....... ...+..++|+|+|++++++. .++.|.+|++.++.. +..+. .
T Consensus 180 --~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~ 256 (361)
T 3scy_A 180 --HKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV 256 (361)
T ss_dssp --EEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS
T ss_pred --EEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC
Confidence 6787764331 1 1111111 12457899999999887766 689999999876643 23332 2
Q ss_pred cccceEEEEEccCCCEEEEeec--CCeeeeccccc--cchhheeeccccCCceeEEEEEecCCcc
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSW--DTTLRDEESKN--RYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~--D~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+...+.+++|+|||++|+.+.. +++|++|+.+. +....+. ........-.+.|+|+|+.
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~--~~~~g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG--YQLTGIHPRNFIITPNGKY 319 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE--EEECSSCCCEEEECTTSCE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee--EecCCCCCceEEECCCCCE
Confidence 3455789999999998866655 48999998853 2211111 1111223445778888763
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=153.69 Aligned_cols=263 Identities=11% Similarity=-0.036 Sum_probs=173.5
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEE--ECCCCCe
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ--VSPDGTA 82 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~--~s~d~~~ 82 (304)
.|.+||+.+++...... .+...+..++|+|||+.|+.++.++.+++||+.+++.......+...+.... ++++++.
T Consensus 61 ~l~~~d~~~g~~~~lt~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~ 138 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTE--GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK 138 (388)
T ss_dssp EEEEEETTTCEEEECCC--SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred eEEEEeCCCCceEEeee--CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCe
Confidence 48888999887654322 1222244678999999999999999999999999877666666666665444 4899998
Q ss_pred EEEEe--------------------CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCC------
Q psy4754 83 FSSGS--------------------WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYND------ 135 (304)
Q Consensus 83 l~sgs--------------------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~d------ 135 (304)
++... .+....+++||+.+++......... .+..+.|+| +++.++....+
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~---~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (388)
T 3pe7_A 139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ---WLGHPIYRPYDDSTVAFCHEGPHDLVD 215 (388)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS---CEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc---cccccEECCCCCCEEEEEEecCCCCCc
Confidence 87432 1122346889988775544332221 245788999 99988877653
Q ss_pred CeEEEecCCccccceeccCcc--cceeEEEEcCCCcEEEEeec-CCce--EEEEeeecCCceEEEeecCcee---eeeeE
Q psy4754 136 YTINVWDSLKCCRVNHLMGHE--NRVSCLQVSPDGTAFSSGSW-DTTL--RCRLFDLRADKEVACYKKDSIL---FGATS 207 (304)
Q Consensus 136 g~i~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~las~s~-d~~i--~i~~~d~~~~~~~~~~~~~~~~---~~~~~ 207 (304)
..|.++|..... ...+..+. ..+....|+|||+.|+..+. ++.- .+++||+.+++........... .....
T Consensus 216 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 216 ARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp CSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred ceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 377888865443 33444444 35778899999997765543 2221 2579999887643222111100 00122
Q ss_pred EEEcCCCCEEEEE---------eCCCcEEEEeCCCceeeEEeecccc-----------ceEEEEEccCCCEEEEee-cCC
Q psy4754 208 VDFSVSGRLLFAG---------YNDYTINVWDSLKCCRVNHLMGHEN-----------RVSCLQVSPDGTAFSSGS-WDT 266 (304)
Q Consensus 208 ~~~s~~g~~l~sg---------~~d~~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~sp~g~~lasgs-~D~ 266 (304)
.+|+|||+.|+.. ..+..|.+||+.+++. ..+..|.. .+.+++|+|||+.|+..+ .++
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g 373 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHG 373 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCC
Confidence 3699999988754 4466899999987654 45666665 578899999999888665 577
Q ss_pred eeeecccc
Q psy4754 267 TLRDEESK 274 (304)
Q Consensus 267 ~i~~~~~~ 274 (304)
...+|..+
T Consensus 374 ~~~l~~~~ 381 (388)
T 3pe7_A 374 KPALYLAT 381 (388)
T ss_dssp SCEEEEEE
T ss_pred ceeEEEEE
Confidence 77777543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-18 Score=146.50 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=164.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---C--cEEEEeCCCceeeeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---Y--TINVWDSLKCCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 77 (304)
+.+|.+||+.+++.... ..+..++|+|||+.|+..+.+ + .|.+||+.+++.......+ . +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeEC
Confidence 45789999998865332 357889999999988877654 3 3778888877655443333 3 9999999
Q ss_pred CCCCeEEEEeCC-------------------------CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE
Q psy4754 78 PDGTAFSSGSWD-------------------------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 132 (304)
Q Consensus 78 ~d~~~l~sgs~D-------------------------~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 132 (304)
|||+.|+.++.+ ..-.+++||+.+++.+..+.. . .+..+.|+|++ .++++
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEE
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEE
Confidence 999988887643 134568899987765333333 1 45678899999 77777
Q ss_pred eCCC-------eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCC------ceEEEEeeecCCceEEEeecC
Q psy4754 133 YNDY-------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT------TLRCRLFDLRADKEVACYKKD 199 (304)
Q Consensus 133 ~~dg-------~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~------~i~i~~~d~~~~~~~~~~~~~ 199 (304)
..+. ...+|.+.+++ ...+..+ ..+..+ +|||+.++.++.+. ...+++|| +++........
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred ecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 5542 33444332332 3334444 455544 99999888777553 23456777 44433222221
Q ss_pred ceeeeeeE-EEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCee-eecccc
Q psy4754 200 SILFGATS-VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL-RDEESK 274 (304)
Q Consensus 200 ~~~~~~~~-~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i-~~~~~~ 274 (304)
. ..+.. +.|+ ++ ++++++.++.++|| +.+++. ..+..+...|.+++|+| ..+++++.+.+. ++|..+
T Consensus 262 ~--~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 262 D--RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp C--SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred C--cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 1 23454 7899 88 98999999999999 775543 44555678899999999 677777777665 788664
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-18 Score=163.30 Aligned_cols=255 Identities=10% Similarity=0.030 Sum_probs=165.9
Q ss_pred CceeEEeeccccceEeeeeccc-cccce--eEEEEcCCCCEEEEeeCC---------CcEEEEeCCCceeeeeecCCcCc
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS-ILFGA--TSVDFSVSGRLLFAGYND---------YTINVWDSLKCCRVNHLMGHENR 70 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~-~~~~i--~~~~~~~~g~~l~tg~~d---------g~v~iwd~~~~~~~~~~~~h~~~ 70 (304)
|++|++||+.++++...+..+. ....+ ..++|||||++|+.++.+ +.+.+||+.+++.. .+..|.+.
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~ 113 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN 113 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc
Confidence 6799999999998765555432 12233 448999999999988876 56679999998754 46678889
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce---e-e-------------ceeeeEEcCCCCEEEEEe
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---L-F-------------GATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~---~-~-------------~~~~~~~s~~~~~l~sg~ 133 (304)
+...+|||||+.|+.++ |+. +++||+.+++..+ +..+.. . . ....+.|||||+.|+.+.
T Consensus 114 ~~~~~~SPdG~~la~~~-~~~--i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW-NND--IYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp EEEEEECSSTTCEEEEE-TTE--EEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred ceeeEECCCCCEEEEEE-CCe--EEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 99999999999999885 566 4789987765433 211111 0 0 012478999999998875
Q ss_pred CCC------------------------------------eEEEecCCc---cc--cceecc------CcccceeEEEEcC
Q psy4754 134 NDY------------------------------------TINVWDSLK---CC--RVNHLM------GHENRVSCLQVSP 166 (304)
Q Consensus 134 ~dg------------------------------------~i~iwd~~~---~~--~~~~~~------~h~~~v~~v~~sp 166 (304)
.|. .|.+||+.+ ++ ....+. +|...+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 321 588899877 52 122232 4778899999999
Q ss_pred CCcEEEEeec--CCceEEEEeeecCCc----eE--EEe--ecCceeee---eeEEEEcCCCCEEE-EEeC-C--CcEEEE
Q psy4754 167 DGTAFSSGSW--DTTLRCRLFDLRADK----EV--ACY--KKDSILFG---ATSVDFSVSGRLLF-AGYN-D--YTINVW 229 (304)
Q Consensus 167 ~~~~las~s~--d~~i~i~~~d~~~~~----~~--~~~--~~~~~~~~---~~~~~~s~~g~~l~-sg~~-d--~~i~iw 229 (304)
||+.++.... .....+++||+.+++ +. ..+ ..+..-.. ....+|+|||+.|+ ..+. + ..|.+|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 9997665433 223346899998876 11 111 11111001 23678999999877 6553 3 457788
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEE-Eeec
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSW 264 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la-sgs~ 264 (304)
|...+.. ..+......|..+. ++|+..|+ +++.
T Consensus 350 ~~~~~~~-~~lT~g~~~v~~~~-~~d~~~i~f~~~~ 383 (740)
T 4a5s_A 350 QIDKKDC-TFITKGTWEVIGIE-ALTSDYLYYISNE 383 (740)
T ss_dssp ETTCSSC-EESCCSSSCEEEEE-EECSSEEEEEESC
T ss_pred ECCCCce-EecccCCEEEEEEE-EEeCCEEEEEEec
Confidence 8776543 34444445555543 24455544 4443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-19 Score=155.57 Aligned_cols=267 Identities=14% Similarity=-0.030 Sum_probs=169.1
Q ss_pred EeeccccceEeeeeccccc---cceeEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 8 LFDLRADKEVACYKKDSIL---FGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 8 ~wd~~~~~~~~~~~~~~~~---~~i~~~~~~~~g~~l~tg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
..|..+++++..+...... ..+..++|+|||+.|+..... ..|.+||+.+++......++......+.|+|||+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 4478888765544332111 116778999999987766443 4688889988765543333333233478999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEecccee-eceee----------------eEEcCCCCEEEEE-----eCCCeEE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-FGATS----------------VDFSVSGRLLFAG-----YNDYTIN 139 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~-~~~~~----------------~~~s~~~~~l~sg-----~~dg~i~ 139 (304)
.|+.++.++. +++||+..++........... ..... +.++|+++.++.. ..+..|.
T Consensus 94 ~l~~~~~~~~--l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 94 AFFYVKNELN--LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp EEEEEETTTE--EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred EEEEEEcCCc--EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 9999988886 578999876654443321110 00001 3467777766554 3567899
Q ss_pred EecCCccccceeccCcccceeEEEEcC-CCcEEEEeecCCc----eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC
Q psy4754 140 VWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTT----LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 214 (304)
Q Consensus 140 iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~----i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g 214 (304)
+||+.+++.. .+..+...+..+.|+| +++.++..+.+.. ..+++||+.+.+...... ......+..++|+|+|
T Consensus 172 ~~d~~~g~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 172 KVDIETGELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTS
T ss_pred EEECCCCcEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCC
Confidence 9998776543 3345667789999999 7887776654432 335678876554322222 1111245778999999
Q ss_pred CEEEEEeCC-----CcEEEEeCCCceeeEEeeccccceEEEEEcc-CCCEEEEeec----------------CCeeeecc
Q psy4754 215 RLLFAGYND-----YTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSW----------------DTTLRDEE 272 (304)
Q Consensus 215 ~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~----------------D~~i~~~~ 272 (304)
++|+.++.+ +.|++||+.+++... +..... .. ++|+| ||+.|+.++. +..|.+|+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 987776543 449999988765432 221222 23 89999 9999887652 46788998
Q ss_pred ccccchhhe
Q psy4754 273 SKNRYMQYL 281 (304)
Q Consensus 273 ~~~~~~~~~ 281 (304)
...+....+
T Consensus 327 ~~~~~~~~l 335 (396)
T 3c5m_A 327 TKAKSAQKL 335 (396)
T ss_dssp TTTTBCCEE
T ss_pred cccCceEEc
Confidence 766544333
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=159.62 Aligned_cols=263 Identities=12% Similarity=-0.035 Sum_probs=173.4
Q ss_pred CceeEEeeccccceEeeeecccccccee---------EEEEc--CCCCE-EEEee-CCCcEEEEeCC--C-ceeeeeecC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGAT---------SVDFS--VSGRL-LFAGY-NDYTINVWDSL--K-CCRVNHLMG 66 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~---------~~~~~--~~g~~-l~tg~-~dg~v~iwd~~--~-~~~~~~~~~ 66 (304)
+++.+||....+.....+ ..+...+. +..|+ |||+. |+.++ .+..|.+|+.. . + ..+.+..
T Consensus 46 ~~~~~l~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~ 122 (662)
T 3azo_A 46 AGRATLVRRRADGAEESA--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTP 122 (662)
T ss_dssp TTEEEEEEECTTSCEEES--SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSC
T ss_pred CCcEEEEEECCCCCccee--CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccC
Confidence 567889985444332222 12222333 55565 99987 66544 35677777765 2 3 3344444
Q ss_pred -----CcCcEEEEEECCCCCeEEEEeCCC--------ceEEEEeeeCC------CeeEeEEe-ccceeeceeeeEEcCCC
Q psy4754 67 -----HENRVSCLQVSPDGTAFSSGSWDT--------TLRCRLFDLRA------DKEVACYK-KDSILFGATSVDFSVSG 126 (304)
Q Consensus 67 -----h~~~V~~l~~s~d~~~l~sgs~D~--------~i~~~~wd~~~------~~~~~~~~-~~~~~~~~~~~~~s~~~ 126 (304)
|...+..++|+|||+.|+.++.|. ...+++||+.. +.. ..+. ... ..+..+.|||||
T Consensus 123 ~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~--~~~~~~~~SpDG 199 (662)
T 3azo_A 123 VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH--RFVTGPRLSPDG 199 (662)
T ss_dssp CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS--SEECCCEECTTS
T ss_pred CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC--CcccCceECCCC
Confidence 677889999999999999888762 13468899876 433 2222 211 134568899999
Q ss_pred CEEEEEeCC--------CeEEEecCC-cc---ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE
Q psy4754 127 RLLFAGYND--------YTINVWDSL-KC---CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194 (304)
Q Consensus 127 ~~l~sg~~d--------g~i~iwd~~-~~---~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~ 194 (304)
++|+.++.+ ..|.+||+. ++ .......+|...+..+.|+|||+++++++.++..++++||+.+++...
T Consensus 200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 200 RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence 999887754 479999987 44 222223345788999999999998888888887667788876655433
Q ss_pred EeecCcee------eeeeEEEEcCCCCEEEEEeCCCcEEEE--eCCCceeeEEeeccccceEEE-EEccCCCEEEEeecC
Q psy4754 195 CYKKDSIL------FGATSVDFSVSGRLLFAGYNDYTINVW--DSLKCCRVNHLMGHENRVSCL-QVSPDGTAFSSGSWD 265 (304)
Q Consensus 195 ~~~~~~~~------~~~~~~~~s~~g~~l~sg~~d~~i~iw--d~~~~~~~~~~~~h~~~i~~l-~~sp~g~~lasgs~D 265 (304)
....+... ..+..++|+|++++++++.. +.++|| |..+++ +..+..|...+..+ +++++...+++++.+
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPR 357 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCC
Confidence 32221110 01356889999999999998 999999 555554 67788888888877 665554556666777
Q ss_pred Ceeeeccc
Q psy4754 266 TTLRDEES 273 (304)
Q Consensus 266 ~~i~~~~~ 273 (304)
...++|..
T Consensus 358 ~~~~i~~~ 365 (662)
T 3azo_A 358 TAYEVVEL 365 (662)
T ss_dssp EEEEEEEE
T ss_pred CCCEEEEE
Confidence 66666643
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-17 Score=144.14 Aligned_cols=221 Identities=10% Similarity=-0.014 Sum_probs=143.0
Q ss_pred CcEEEEeC--CCceee--eeec-CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC-CCeeEeEEeccceeeceeeeE
Q psy4754 48 YTINVWDS--LKCCRV--NHLM-GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADKEVACYKKDSILFGATSVD 121 (304)
Q Consensus 48 g~v~iwd~--~~~~~~--~~~~-~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~-~~~~~~~~~~~~~~~~~~~~~ 121 (304)
+.|.+|+. .+++.. .... .....+..++|+|||++|++++.+ + +.+||+. +++.......... .....++
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~--v~~~~~~~~g~~~~~~~~~~~-g~~~~~~ 89 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-K--WSSFAVKSPTEIVHEASHPIG-GHPRAND 89 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-E--EEEEEEEETTEEEEEEEEECC-SSGGGGC
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-e--EEEEEECCCCCEEEeeEeecC-CCCccEE
Confidence 46777664 455432 2211 233467789999999999999888 4 5789986 5554332221100 1134688
Q ss_pred EcCCCCE--EEEEe-------------CCCeEEEecCCc-cccceecc----CcccceeEEEEcCCCcEEEEeec-CCce
Q psy4754 122 FSVSGRL--LFAGY-------------NDYTINVWDSLK-CCRVNHLM----GHENRVSCLQVSPDGTAFSSGSW-DTTL 180 (304)
Q Consensus 122 ~s~~~~~--l~sg~-------------~dg~i~iwd~~~-~~~~~~~~----~h~~~v~~v~~sp~~~~las~s~-d~~i 180 (304)
|+|++++ +++++ .++.+.+|++.. ++....+. .+...+.+++|+|||++++++.. ++.
T Consensus 90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~- 168 (365)
T 1jof_A 90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK- 168 (365)
T ss_dssp TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-
T ss_pred ECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE-
Confidence 9999995 44543 689999999863 33322222 24567899999999998887654 455
Q ss_pred EEEEeeec-CCceE--EEeecCceeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCC--Cceee---EEee-------ccc
Q psy4754 181 RCRLFDLR-ADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSL--KCCRV---NHLM-------GHE 244 (304)
Q Consensus 181 ~i~~~d~~-~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~--~~~~~---~~~~-------~h~ 244 (304)
+++|++. +++.. ..+........+..++|+|+|+++++++. ++.|.+|+.. +++.. ..+. +|.
T Consensus 169 -v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 169 -LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp -EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred -EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 4789987 55542 22221100124678999999999887764 6899999754 44432 1221 223
Q ss_pred c------ceEEEE-EccCCCEEEEeecCC------eeeecccc
Q psy4754 245 N------RVSCLQ-VSPDGTAFSSGSWDT------TLRDEESK 274 (304)
Q Consensus 245 ~------~i~~l~-~sp~g~~lasgs~D~------~i~~~~~~ 274 (304)
. .+..++ |+|||++|+++..+. +|++|+.+
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 2 588999 999999887766533 89999875
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-18 Score=149.51 Aligned_cols=260 Identities=12% Similarity=-0.007 Sum_probs=168.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEE--------
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC-------- 73 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~-------- 73 (304)
|+..|.+||+.+++........ ......+.|+|||+.|+.++.++.|.+||+.+++.......+..+...
T Consensus 58 g~~~l~~~d~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~ 135 (396)
T 3c5m_A 58 GNRNYYLLNLETQQAVQLTEGK--GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSD 135 (396)
T ss_dssp SSCEEEEEETTTTEEEECCCSS--CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT
T ss_pred CCceEEEEECCCCcEEEeecCC--CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEecc
Confidence 3457888899888654322111 111334789999999999999999999999887655544445444433
Q ss_pred -----------EEECCCCCeEEEEeC---CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCC---
Q psy4754 74 -----------LQVSPDGTAFSSGSW---DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYND--- 135 (304)
Q Consensus 74 -----------l~~s~d~~~l~sgs~---D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~d--- 135 (304)
++|+|+++.++.... +....+++||+.+++........ ..+..+.|+| ++..++..+.+
T Consensus 136 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~---~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 136 CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT---AWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECSCSS
T ss_pred CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC---cccccceECCCCCCEEEEEecCCCC
Confidence 356788876654431 23334688999876654433221 2345788999 78877766543
Q ss_pred ---CeEEEecCCccccceeccCc--ccceeEEEEcCCCcEEEEeecC-CceE--EEEeeecCCceEEEeecCceeeeeeE
Q psy4754 136 ---YTINVWDSLKCCRVNHLMGH--ENRVSCLQVSPDGTAFSSGSWD-TTLR--CRLFDLRADKEVACYKKDSILFGATS 207 (304)
Q Consensus 136 ---g~i~iwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~las~s~d-~~i~--i~~~d~~~~~~~~~~~~~~~~~~~~~ 207 (304)
..|.+||+.... ...+..+ ...+..++|+||++.++..+.+ +.-. +++||+.+++......... ..
T Consensus 213 ~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~- 286 (396)
T 3c5m_A 213 LVDARMWLVNEDGSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS- 286 (396)
T ss_dssp SCSCCCEEEETTSCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-
T ss_pred CCCceEEEEECCCCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-
Confidence 368888876543 2233333 2357889999999987766543 2212 5789988776533322211 12
Q ss_pred EEEcC-CCCEEEEEe----------------CCCcEEEEeCCCceeeEEeecccc-----------ceEEEEEccCCCEE
Q psy4754 208 VDFSV-SGRLLFAGY----------------NDYTINVWDSLKCCRVNHLMGHEN-----------RVSCLQVSPDGTAF 259 (304)
Q Consensus 208 ~~~s~-~g~~l~sg~----------------~d~~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~sp~g~~l 259 (304)
+.|+| +|++++++. .+..|.+||..+++. ..+..|.. .+.+++|+|||+.|
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeE
Confidence 78999 999888754 346899999877653 34555554 25678999999998
Q ss_pred EEeec-CCeeeeccc
Q psy4754 260 SSGSW-DTTLRDEES 273 (304)
Q Consensus 260 asgs~-D~~i~~~~~ 273 (304)
+..+. ++...+|..
T Consensus 366 ~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEECTTSSCEEEEE
T ss_pred EEEecCCCCceEEEE
Confidence 87764 566666644
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-17 Score=155.62 Aligned_cols=242 Identities=10% Similarity=-0.049 Sum_probs=165.0
Q ss_pred cceeEEEEcCCCCEEEEe--eCCCcEEEEeCCCceeeeeecCCcCcEE---------EEEEC--CCCCe-EEEEeCCCce
Q psy4754 27 FGATSVDFSVSGRLLFAG--YNDYTINVWDSLKCCRVNHLMGHENRVS---------CLQVS--PDGTA-FSSGSWDTTL 92 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg--~~dg~v~iwd~~~~~~~~~~~~h~~~V~---------~l~~s--~d~~~-l~sgs~D~~i 92 (304)
..+..++|++++-++++. +.++...||....+...+.+..|...+. ...|+ |||+. |+.++. ...
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~-~~~ 102 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF-GDQ 102 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT-TTC
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC-CCC
Confidence 448899999887777777 6689999999654444555666666655 56565 99998 776554 344
Q ss_pred EEEEeeeC--C-CeeEeEEeccc---eeeceeeeEEcCCCCEEEEEeCC----------CeEEEecCCcc-----cccee
Q psy4754 93 RCRLFDLR--A-DKEVACYKKDS---ILFGATSVDFSVSGRLLFAGYND----------YTINVWDSLKC-----CRVNH 151 (304)
Q Consensus 93 ~~~~wd~~--~-~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~sg~~d----------g~i~iwd~~~~-----~~~~~ 151 (304)
.++++++. . +. ...+.... .......++|+|||+.|++++.+ ..|.+||+.+. .....
T Consensus 103 ~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 103 RLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred eEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 45667665 2 32 22232210 11234678999999999998876 68999998772 23445
Q ss_pred cc-CcccceeEEEEcCCCcEEEEeecCC------ceEEEEeeec-CC---ceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 152 LM-GHENRVSCLQVSPDGTAFSSGSWDT------TLRCRLFDLR-AD---KEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 152 ~~-~h~~~v~~v~~sp~~~~las~s~d~------~i~i~~~d~~-~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
+. .+...+..++|||||+.|+.++.++ .-.+++||+. ++ +.......+. ..+..++|+|||++++++
T Consensus 182 l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~--~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 182 LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE--EAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT--BCEEEEEECTTSCEEEEE
T ss_pred EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC--ceEcceEECCCCeEEEEE
Confidence 55 6667888899999999999888664 1246899998 45 3322222211 245788999999988888
Q ss_pred eCCC--cEEEEeCCCceeeEEeeccccc--------eEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 221 YNDY--TINVWDSLKCCRVNHLMGHENR--------VSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 221 ~~d~--~i~iwd~~~~~~~~~~~~h~~~--------i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..++ .|.+||..+++......++... +.+++|+|+++++++++. +++++|..
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 8888 5666676555433322223222 567999999999999998 99999944
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=135.61 Aligned_cols=229 Identities=10% Similarity=0.060 Sum_probs=165.0
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
..+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.| .+||..+++....
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i--~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL--ERQREPGGEWESI 105 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEE--EEECSTTCCEEEE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeE--EEEcCCCCcEEEE
Confidence 57899999998 7889999999999999877 55666677889999999999988877666664 6899866654332
Q ss_pred Eec--cceeeceeeeEEcCCCCEEEEE----e-------------CCCeEEEecCCccccceeccCcccceeEEEEcCCC
Q psy4754 108 YKK--DSILFGATSVDFSVSGRLLFAG----Y-------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 108 ~~~--~~~~~~~~~~~~s~~~~~l~sg----~-------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 168 (304)
... ......+..++++++|+++++. + ..+.|..++.. ..+..+..+...+..++|+|++
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTS
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCC
Confidence 211 1111134578899999988863 2 13567777754 2334445566678899999999
Q ss_pred cEEEEeecCCceEEEEeeec-CCce---EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccc
Q psy4754 169 TAFSSGSWDTTLRCRLFDLR-ADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~-~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 244 (304)
+.+++.+.++.+ ++|++. .++. ...+ .. ....+..++++++|+++++. ++.|.+|+.. ++.+..+..+.
T Consensus 184 ~~lv~~~~~~~i--~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 184 NLLVSDTGDNAT--HRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp CEEEEETTTTEE--EEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS
T ss_pred CEEEEeCCCCeE--EEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC
Confidence 988776667764 688886 3332 2222 11 11234678999999987777 7899999976 67777787777
Q ss_pred cceEEEEE-ccCCCEEEEeecCCeeeec
Q psy4754 245 NRVSCLQV-SPDGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 245 ~~i~~l~~-sp~g~~lasgs~D~~i~~~ 271 (304)
. +.+++| +|+++.|..++.++..++-
T Consensus 257 ~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 257 T-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp C-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred C-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 7 999999 6899988888887655543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-15 Score=131.95 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=157.8
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC----CceEEEEeeeCCCe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD----TTLRCRLFDLRADK 103 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D----~~i~~~~wd~~~~~ 103 (304)
.+.+++|+++|.+++++..++.|.+||..+++.......+...+.+++++++|+++++...+ +. +..||.....
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~--i~~~d~~~~~ 123 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG--IFAATENGDN 123 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE--EEEECTTSCS
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce--EEEEeCCCCE
Confidence 36889999999988899899999999998876554443566789999999999988877655 45 4678887655
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeC------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE-Eeec
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSW 176 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~ 176 (304)
....+........+..+.+++++..+++... .+.|..+|..+.+ +..+..+...+..++|+|+++.++ +.+.
T Consensus 124 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 124 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-EEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 4322221111123567899999987776553 3567777765433 222333334578899999998554 4445
Q ss_pred CCceEEEEeeecC-CceEEEee-----cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-----
Q psy4754 177 DTTLRCRLFDLRA-DKEVACYK-----KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN----- 245 (304)
Q Consensus 177 d~~i~i~~~d~~~-~~~~~~~~-----~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~----- 245 (304)
++.+ ++||... ++.+..+. .......+..++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 203 ~~~i--~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~ 279 (333)
T 2dg1_A 203 ANRL--HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM 279 (333)
T ss_dssp GTEE--EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred CCeE--EEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccc
Confidence 6664 6888853 22221110 0000024577999999999888888889999997 4566666655433
Q ss_pred -ceEEEEEccCCCEEEEeecC
Q psy4754 246 -RVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 246 -~i~~l~~sp~g~~lasgs~D 265 (304)
.+.+++|+||+..|..++.+
T Consensus 280 ~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 280 LRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CBCCEEEECTTSCEEEEEEEC
T ss_pred cCcceEEECCCCCEEEEEeCc
Confidence 68999999998766655444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-16 Score=149.64 Aligned_cols=248 Identities=13% Similarity=0.074 Sum_probs=168.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCc-----------
Q psy4754 28 GATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT----------- 91 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~----------- 91 (304)
.+..++|||||++||.++.++ +|++||+.+++.......+ ..+..++|+|||+.|+.++.|..
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 478999999999988665543 8999999998876532222 23667999999999998887764
Q ss_pred ---eEEEEeeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeC-----CCeEEEecCCc------cc-cceeccC
Q psy4754 92 ---LRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYN-----DYTINVWDSLK------CC-RVNHLMG 154 (304)
Q Consensus 92 ---i~~~~wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-----dg~i~iwd~~~------~~-~~~~~~~ 154 (304)
-++++|++.+.+. ...+...........+.|+||+++++..+. +..|.+||+.+ +. ....+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 2357899977652 222222111111357889999999888764 67899999865 32 3555666
Q ss_pred cccceeEEEEcCCCcEEEEeecCC--ceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc--EEE
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDT--TLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYT--INV 228 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~--~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~--i~i 228 (304)
+...+.. .|+|+|..|+..+.++ ..++++||+.+... ...+-.+.....+..+++++++.++++...++. |.+
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 6666655 4888988777665432 33457888876531 122222211113467788888888888888885 556
Q ss_pred EeCCCceeeEEeeccccceEEEEEccCCCEEEEe-e---cCCeeeeccccccc
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-S---WDTTLRDEESKNRY 277 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg-s---~D~~i~~~~~~~~~ 277 (304)
|+..+++.+..+..+.+.|..++++|++..++.. + ...+|..|+...+.
T Consensus 364 ~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 364 HDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6776777777788888889999999998766532 2 34678888875543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-16 Score=133.92 Aligned_cols=260 Identities=11% Similarity=0.004 Sum_probs=181.3
Q ss_pred CceeEEeeccccceEeeeecc----ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKD----SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~----~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
+++|.+||..+++....+... ........+.+. ++.++++...++.|.+||..+++.+.++. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 789999999999875433111 111225667774 45666777778999999999998888775 346678999989
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce---eeceeeeEEcCCCCEEEEEe--CCCeEEEecCCccccceecc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---LFGATSVDFSVSGRLLFAGY--NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~ 153 (304)
+++.+++...++.| .+||..+.+....++.... ......+++ ++..++.+. .++.|.++|..+.+.+.++.
T Consensus 94 ~g~lyv~~~~~~~v--~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 94 DEKAYVTQIWDYRI--FIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp TTEEEEEEBSCSEE--EEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEECCCCeE--EEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 88666666578775 6899988776655543220 002235566 345555554 48999999998877665544
Q ss_pred CcccceeEEEEcCCCcEEEEeecC----------CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGSWD----------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s~d----------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
. ......+.++|+|++++++..+ +. +.++|..+.+....+..... ..+..++++|++++|.++..
T Consensus 170 ~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~--v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 170 I-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS--LYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp C-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE--EEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS-
T ss_pred c-CCCccceEEcCCCCEEEEECCCccCCccccCCce--EEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc-
Confidence 3 2345788999999987777654 45 46899888776655542211 14588999999998888754
Q ss_pred CcEEEEeCCCceeeEE--eeccccceEEEEEcc-CCCEEEEe----ecCCeeeecccc
Q psy4754 224 YTINVWDSLKCCRVNH--LMGHENRVSCLQVSP-DGTAFSSG----SWDTTLRDEESK 274 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~--~~~h~~~i~~l~~sp-~g~~lasg----s~D~~i~~~~~~ 274 (304)
.|.+||..+++.... +..+......++++| ++..+++. +.++.|..|+.+
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 899999887664321 222246789999999 67788887 678999999876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-16 Score=135.92 Aligned_cols=220 Identities=11% Similarity=0.030 Sum_probs=152.4
Q ss_pred eeEEEEcCCCCEEEEe---------eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC---CceEEEE
Q psy4754 29 ATSVDFSVSGRLLFAG---------YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D---~~i~~~~ 96 (304)
+...++ ||+.++.. +.++.|.+||+.+++.. .+ ..+..++|+|||+.|+..+.+ +...+++
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 677777 88877643 23678999999877643 33 567889999999999887754 4555788
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---------------------------CCeEEEecCCccccc
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---------------------------DYTINVWDSLKCCRV 149 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---------------------------dg~i~iwd~~~~~~~ 149 (304)
||+..++......... +..+.|+|+++.|+.++. ...|.+||+.+++.+
T Consensus 90 ~~~~~g~~~~l~~~~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 90 ADLETLSSKKILEAKN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EETTTTEEEEEEEESE----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EECCCCceEEEEcCCC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 8888766554433321 567899999998888763 257899998876653
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCC-------ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDT-------TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN 222 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~-------~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~ 222 (304)
..+.. . .+..++|+||+ ++++++.+. ...++++| +++.. .+... ..+.. ++|+|++|+.++.
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~---~~~~~--~spdg~~l~~~~~ 234 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK---VSFYA--VDSDGERILLYGK 234 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE---ESEEE--EEECSSCEEEEEC
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC---cceee--ECCCCCEEEEEEc
Confidence 44444 3 78899999999 777776542 33445555 44332 22221 12233 3999999888764
Q ss_pred C--------CcEEEEeCCCceeeEEeeccccceEE-EEEccCCCEEEEeecCCeeeeccccc
Q psy4754 223 D--------YTINVWDSLKCCRVNHLMGHENRVSC-LQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 223 d--------~~i~iwd~~~~~~~~~~~~h~~~i~~-l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+ ..|.+|| +++......+|...+.. +.|+ |+ .+++++.|+.+++| .+.
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred cccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 4 3688888 44443334456778886 9999 88 99999999999999 763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=129.10 Aligned_cols=223 Identities=12% Similarity=0.146 Sum_probs=154.5
Q ss_pred CCceeEEeeccccceEeeeecc----ccccceeEEEE-cCCCCEEEEeeC-CCcEEEEeCCCceeeeeec-CCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD----SILFGATSVDF-SVSGRLLFAGYN-DYTINVWDSLKCCRVNHLM-GHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~----~~~~~i~~~~~-~~~g~~l~tg~~-dg~v~iwd~~~~~~~~~~~-~h~~~V~~l 74 (304)
+++.|++||.. ++....+... .+...+..+++ .+++.++++... ++.|++|| .+++.+..+. .+...+.++
T Consensus 49 ~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i 126 (286)
T 1q7f_A 49 NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGV 126 (286)
T ss_dssp GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEE
T ss_pred CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEE
Confidence 35679999988 4444444321 12234788999 577877777644 89999999 4566665553 344678999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 154 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 154 (304)
++.++|+++++...++.| .+||.. ++.+..+........+..++++++++.+++...++.|.+||.. +..+.++..
T Consensus 127 ~~~~~g~l~v~~~~~~~i--~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 202 (286)
T 1q7f_A 127 TVDNKGRIIVVECKVMRV--IIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG 202 (286)
T ss_dssp EECTTSCEEEEETTTTEE--EEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred EEeCCCCEEEEECCCCEE--EEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEcc
Confidence 999999988887777774 678854 4444444322122235789999999877777778999999964 344444433
Q ss_pred --cccceeEEEEcCCCcEEEEeecCC-ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 155 --HENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 155 --h~~~v~~v~~sp~~~~las~s~d~-~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+...+..++++|+++++++...++ .| .+||.. ++.+..+........+..++++|+|+++++ +.++.|++|+.
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i--~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNL--TIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEE--EEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEE--EEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 346789999999999888887775 65 689854 455555543322223578999999998877 57899999987
Q ss_pred CCc
Q psy4754 232 LKC 234 (304)
Q Consensus 232 ~~~ 234 (304)
...
T Consensus 279 ~~~ 281 (286)
T 1q7f_A 279 VQL 281 (286)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-16 Score=128.70 Aligned_cols=241 Identities=9% Similarity=0.034 Sum_probs=165.2
Q ss_pred ceeEEEEcCCCCEEE-EeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 28 GATSVDFSVSGRLLF-AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~-tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
...+++++++|.+++ +...++.|.+||..+.........+...+.++++.++++++++.. ++.| ..||...... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i--~~~d~~~~~~-~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRV--VTLAAGSNNQ-T 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEE--EEECTTCSCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEE--EEEeCCCceE-e
Confidence 567899999999887 657889999999866543222223345678899999999777765 6664 6788765432 2
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
.+... ....+..+++++++..+++...++.|.+|+..+.............+.+++++|+++.+++...++.+ ..||
T Consensus 101 ~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i--~~~~ 177 (270)
T 1rwi_B 101 VLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV--VKLE 177 (270)
T ss_dssp ECCCC-SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEE--EEEC
T ss_pred eeecC-CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEE--EEEe
Confidence 22111 11235678899999877776778899999865543322222333467889999999977776666664 5788
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
............. ...+..++++++|.++++...++.|.+|+............+...+.+++++|+|+.+++.+.++
T Consensus 178 ~~~~~~~~~~~~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 178 AESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred cCCCceEeecccC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 7765433221111 13467899999998888887788999999865443322223446789999999999999999999
Q ss_pred eeeeccccccc
Q psy4754 267 TLRDEESKNRY 277 (304)
Q Consensus 267 ~i~~~~~~~~~ 277 (304)
.|+++++..+.
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999876654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-15 Score=134.40 Aligned_cols=245 Identities=12% Similarity=0.020 Sum_probs=167.4
Q ss_pred CceeEEeeccccceEeeeeccc----cccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeee-ecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS----ILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNH-LMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~----~~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~ 75 (304)
+++|.+||+.+.+....+.... .......++|+|+|++|+++.. +++|.+||+.+++.+.. +... ....+.
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~ 157 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVI 157 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeE
Confidence 4679999999988765554321 1123567999999999988763 68999999999988777 5422 223356
Q ss_pred ECCCC-CeEEEEeCCCceEEEEeeeCC-CeeEeEEeccceee----ceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-
Q psy4754 76 VSPDG-TAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILF----GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR- 148 (304)
Q Consensus 76 ~s~d~-~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~----~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~- 148 (304)
+.|++ ..+++.+.|+.+ ..|++.. ++........ ..+ ....+.+++++..++..+.++.|.++|+.....
T Consensus 158 ~~p~~~~~~~~~~~dg~~--~~v~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGL--LTINLGEDGKVASQSRSK-QMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp ECTTSSSEEEEEETTSSE--EEEEECTTSSEEEEEECC-CCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred EcCCCCeeEEEECCCCcE--EEEEECCCCcEeeecccc-ceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 77765 577888889885 5677754 3332111100 000 011233467777777778899999999764321
Q ss_pred -ceecc--C----c----ccceeEEEEcCCCcEEEEeec-C--------CceEEEEeeecCCceEEEeecCceeeeeeEE
Q psy4754 149 -VNHLM--G----H----ENRVSCLQVSPDGTAFSSGSW-D--------TTLRCRLFDLRADKEVACYKKDSILFGATSV 208 (304)
Q Consensus 149 -~~~~~--~----h----~~~v~~v~~sp~~~~las~s~-d--------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
...+. . + ......++|+|+++.++.+.. + ....+++||+.+.+.+..+..+. +..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~i 310 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSM 310 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEE
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEE
Confidence 11110 0 0 111223789999877665432 1 22346799999999888887664 5899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCc--eeeEEeeccccceEEEEEccCCC
Q psy4754 209 DFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 209 ~~s~~g~~l~sg~~d~~i~iwd~~~~--~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+|+|+|++|+++.. ++|.+||..++ +.+.++..+......++++|+|+
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999998876 99999999999 98888877777889999999985
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-16 Score=147.75 Aligned_cols=245 Identities=13% Similarity=-0.019 Sum_probs=161.2
Q ss_pred cceeEEEEcCCCCEEE-----EeeCCCcEEEEeCCCceeeeeecCCcCcE--EEEEECCCCCeEEEEeCCCc--------
Q psy4754 27 FGATSVDFSVSGRLLF-----AGYNDYTINVWDSLKCCRVNHLMGHENRV--SCLQVSPDGTAFSSGSWDTT-------- 91 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~-----tg~~dg~v~iwd~~~~~~~~~~~~h~~~V--~~l~~s~d~~~l~sgs~D~~-------- 91 (304)
..+.+++|||||++|| .|+.+.+|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 3488999999999988 55566799999999987651 1122233 67899999999999988764
Q ss_pred ---eEEEEeeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeCCC----eEEEecCCccccceeccCcccceeEE
Q psy4754 92 ---LRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDY----TINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 92 ---i~~~~wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
-++++|++.+... ...+...........+.++|||++++..+.++ .|.+||..+. ....+..+...+...
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~ 277 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-DFRLLVKGVGAKYEV 277 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-SCEEEEECSSCCEEE
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-ceEEeecCCCceEEE
Confidence 2357899987652 22232211111245788999999998877665 7777775443 344455555566666
Q ss_pred EEcCCCcEEEEeecC-CceEEEEeeecCCce---EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-Cceee
Q psy4754 163 QVSPDGTAFSSGSWD-TTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRV 237 (304)
Q Consensus 163 ~~sp~~~~las~s~d-~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~~ 237 (304)
.+ |++.+++....+ ..-++++||+.+.+. ....... ....+..++++ ++.++++...|+..+||... ++..+
T Consensus 278 ~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 278 HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence 66 566644444333 123457888876542 2222221 11234567777 77888889899998888544 35555
Q ss_pred EEeecc-ccceEEEEEccCCCEEE----EeecCCeeeeccccccc
Q psy4754 238 NHLMGH-ENRVSCLQVSPDGTAFS----SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 238 ~~~~~h-~~~i~~l~~sp~g~~la----sgs~D~~i~~~~~~~~~ 277 (304)
..+..+ .+.|..++++|++..++ +...+.+|.+|+...+-
T Consensus 355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666655 67788899999998777 33345788899876543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-15 Score=129.77 Aligned_cols=236 Identities=7% Similarity=0.022 Sum_probs=164.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
+.++.|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.| ++||..+++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i--~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNI--FKINPETKEIKRPF 82 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEE--EEECTTTCCEEEEE
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEE--EEEeCCCCcEEEEe
Confidence 6778899988877777889999999 345566666777788999999999988888888874 68998766544332
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEeecC----C
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGSWD----T 178 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~d----~ 178 (304)
... ...+..++++++++++++...+ +.|.+||..+......+ ..+...+..++++|+++++++...+ .
T Consensus 83 ~~~--~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSH--KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECS--SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eCC--CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 221 1235788999999877776666 68999998765432122 1244578999999999888776532 1
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCC-ceeeEE--------eeccccceE
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLK-CCRVNH--------LMGHENRVS 248 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~-~~~~~~--------~~~h~~~i~ 248 (304)
...++.+|..+.+....... ...+..++|+|+|+.| ++...++.|.+||..+ +..+.. +.++ ..+.
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD 236 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred CceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence 23345666554333222111 1235789999999865 4455678999999853 222211 1222 4678
Q ss_pred EEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.++++++|.++++...++.|..|+.+.
T Consensus 237 ~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred ceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 899999999998888889999998743
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-15 Score=129.18 Aligned_cols=231 Identities=11% Similarity=0.088 Sum_probs=158.1
Q ss_pred cCcEEEEEECCCCCeEEEEeCCCce----------------------EEEEeeeCCCeeEeEEeccceeeceeeeEEcCC
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSWDTTL----------------------RCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~D~~i----------------------~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 125 (304)
-+.+.+++++|+|+++++.+.++.+ .+.+||..+++.+..+... .......++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-LFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-TCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-ccCCceEEEECCC
Confidence 3679999999999999988877432 2578998777665544321 2224568899999
Q ss_pred CCEEEEEeCCCeEEEecCCccc-cceec---------cCcccceeEEEEcC-CCcEEEEee-cCCceEEEEeeecCCceE
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCC-RVNHL---------MGHENRVSCLQVSP-DGTAFSSGS-WDTTLRCRLFDLRADKEV 193 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~v~~sp-~~~~las~s-~d~~i~i~~~d~~~~~~~ 193 (304)
++.+++...++.|++||..... .+..+ .++...+..|+++| +++++++.+ .++.| ++|| ..++.+
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I--~~~~-~~g~~~ 178 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI--VQFS-PSGKFV 178 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE--EEEC-TTSCEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE--EEEc-CCCCEE
Confidence 9988888889999999975432 33333 34455789999999 888888876 57775 6888 445555
Q ss_pred EEeecC--------ceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCceeeEEee--ccccceEEEEEcc------CC
Q psy4754 194 ACYKKD--------SILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSP------DG 256 (304)
Q Consensus 194 ~~~~~~--------~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~~~i~~l~~sp------~g 256 (304)
..+... .....+..++++|+ +.++++...++.|++|+..+++.+..+. .+...+.+++|+| +|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 444211 12233689999998 8888888888999999998888887774 4667889999999 44
Q ss_pred CEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCc
Q psy4754 257 TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 257 ~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (304)
..+++.+.+.+|++|+...+.....+.........+-.+++.|+|.
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 4444444556899998766543333321112222245566677664
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-15 Score=123.66 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=165.4
Q ss_pred CCCEEEEeeCCCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceee
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 115 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~ 115 (304)
.+++|++++.|+.|.+||..+|+.+-.+..+. ..+.++++.|+|++|++ .++. +..||. +++.+..++.... .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~--V~~~d~-~G~~~W~~~~~~~-~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKG--AKMITR-DGRELWNIAAPAG-C 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSE--EEEECT-TSCEEEEEECCTT-C
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCC--EEEECC-CCCEEEEEcCCCC-c
Confidence 46899999999999999999999988887765 47889999999999884 3555 467888 6788877765311 1
Q ss_pred ceeeeEEcCCCCEEEEEeC-CCeEEEecCCccccceecc------CcccceeEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 116 GATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLM------GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~------~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
.+.++.+.++++.+++.+. ++.|..+|. +++.+.++. ++......+++.++|+++++.+.++.+ ..||..
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v--~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEV--REIAPN 154 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEE--EEECTT
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEE--EEECCC
Confidence 3457788999999999877 778888885 444443322 233455667889999999999888885 589987
Q ss_pred CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccc------cceEEEEEccCCCEEEEe
Q psy4754 189 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE------NRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~------~~i~~l~~sp~g~~lasg 262 (304)
++.+-.+.... .+.++...++|++++++..++.|..+|..+++.+.++..+. ..+..++..++|..+++.
T Consensus 155 -G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 155 -GQLLNSVKLSG---TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -SCEEEEEECSS---CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -CCEEEEEECCC---CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 77776665442 24567789999999999888899999999899988886542 237899999999999987
Q ss_pred e
Q psy4754 263 S 263 (304)
Q Consensus 263 s 263 (304)
+
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-13 Score=112.93 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=165.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
..+.++++.++|.++++...++.|.+||.. ++... .+..+...+.++++.++++++++...++.+ ..||... + .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i--~~~~~~g-~-~ 89 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKI--GRITKKG-I-I 89 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE--EEECTTS-C-E
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeE--EEECCCC-c-E
Confidence 458899999999988887778999999988 54332 122345778999999999988887666664 5677652 2 2
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce-eccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
..+........+..+.+.+++..+++...++.|.+||. ++.... ....+...+..++++|+++.+++...++.+ ..
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i--~~ 166 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI--GR 166 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE--EE
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE--EE
Confidence 22221111123567889999987777777889999997 333221 223344568999999999888776656664 57
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE-eeccccceEEEEEccCCCEEEEee
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
+|. +++... +........+..+++.++|.++++...++.|..||. ++..... ...+...+.+++++|+|..+++..
T Consensus 167 ~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 167 ITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp ECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred EcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc
Confidence 887 444332 211111234678999999998888777889999998 5543321 233557889999999999888876
Q ss_pred cCCeeeeccccc
Q psy4754 264 WDTTLRDEESKN 275 (304)
Q Consensus 264 ~D~~i~~~~~~~ 275 (304)
.++.|..++...
T Consensus 244 ~~~~i~~~d~~g 255 (299)
T 2z2n_A 244 GANKIGRLTSNN 255 (299)
T ss_dssp TTTEEEEEETTT
T ss_pred CCceEEEECCCC
Confidence 788999998743
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-13 Score=113.83 Aligned_cols=253 Identities=9% Similarity=0.010 Sum_probs=168.3
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-eeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~~ 81 (304)
++.|.+||.. ++.. .+........+.++++.++|.++++...++.|..||.. ++.. ..+......+.++++.++++
T Consensus 35 ~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 35 ANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGD 111 (299)
T ss_dssp TTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC
T ss_pred CCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCC
Confidence 5678999988 5432 22222223458899999999988888778999999986 3321 11223456788999999998
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee-ccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~ 160 (304)
++++...++.+ ..||. +++.. .+........+..+.+.+++...++...++.|..||. +++.... ...+...+.
T Consensus 112 l~v~~~~~~~i--~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 186 (299)
T 2z2n_A 112 IWFTEMNGNRI--GRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPV 186 (299)
T ss_dssp EEEEETTTTEE--EEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred EEEEecCCceE--EEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcce
Confidence 88887666664 56777 33322 2221111123567889999987777666789999997 4433221 233445688
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
+++++++++.+++...++.+ ..||. +++.. .+........+..++++++|+++++...++.|..||. ++. +..+
T Consensus 187 ~i~~~~~g~l~v~~~~~~~i--~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~ 260 (299)
T 2z2n_A 187 GITKGNDDALWFVEIIGNKI--GRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEY 260 (299)
T ss_dssp EEEECTTSSEEEEETTTTEE--EEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEE
T ss_pred eEEECCCCCEEEEccCCceE--EEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEE
Confidence 99999999877766556664 57887 44432 2322211234678999999998777767789999998 443 3333
Q ss_pred --eccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 241 --MGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 241 --~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
..+...+.++++ ++|..+++.+.++.+++
T Consensus 261 ~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 261 PIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred eCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 345678999999 99998887664444443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-14 Score=128.95 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=182.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeeeecCCcCcEEEEEEC--
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVS-- 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s-- 77 (304)
++++|.++|..+++.+..+... .....+.|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g---~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~ 250 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTG---YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM 250 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred CCCeEEEEECCCCeEEEEEeCC---CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence 4689999999999887766532 235689999999999999999999999995 777777766533 35789999
Q ss_pred --CCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccce---------eeceeeeEEcCCCCEE-EEEeCCCeEEEecCC
Q psy4754 78 --PDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSI---------LFGATSVDFSVSGRLL-FAGYNDYTINVWDSL 144 (304)
Q Consensus 78 --~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~ 144 (304)
|||++++.+.. ++++ .++|..+.+.+..+..... ...+..+..++++..+ +....+|.|.++|..
T Consensus 251 ~~pDGk~l~v~n~~~~~v--~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQY--VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp TTCTTTEEEEEEEETTEE--EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred cCCCCCEEEEEEccCCeE--EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 69998876654 5775 6889888777766543211 0023456677775554 445567999999976
Q ss_pred cccc--ceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeec-CceeeeeeEEE-EcCC-CCEEE
Q psy4754 145 KCCR--VNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKK-DSILFGATSVD-FSVS-GRLLF 218 (304)
Q Consensus 145 ~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~s~~-g~~l~ 218 (304)
.... +..+ ........+.|+|++++|+++. .++.| .++|+.+.+.+..... .....+-.... ++|+ +..++
T Consensus 329 ~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V--~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~ 405 (567)
T 1qks_A 329 DLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKL--VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 405 (567)
T ss_dssp CSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEE--EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred CCccceeeee-eccccccCceECCCCCEEEEEeCCCCeE--EEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence 5322 1121 2233466789999999877665 45554 6899999887666654 33222111222 5787 55555
Q ss_pred EEe-CCCcEEEEeCCC-------ceeeEEeeccccceEEEEEccCCCEEEEeec-------CCeeeecccccc
Q psy4754 219 AGY-NDYTINVWDSLK-------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-------DTTLRDEESKNR 276 (304)
Q Consensus 219 sg~-~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~-------D~~i~~~~~~~~ 276 (304)
++. .+++|.++|..+ .+.+.++......-.-++++|++++|..... ..+|.++|..+.
T Consensus 406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred eCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 554 468999999876 6677777765433345788999998887653 358888887543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-14 Score=119.85 Aligned_cols=238 Identities=14% Similarity=0.072 Sum_probs=160.6
Q ss_pred eeEEEEcCCCCEEEE-------eeCCCcEEEEeCCCceeeeeec----CCcCcEEEEEECCC-CCeEEEEeCCCceEEEE
Q psy4754 29 ATSVDFSVSGRLLFA-------GYNDYTINVWDSLKCCRVNHLM----GHENRVSCLQVSPD-GTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~t-------g~~dg~v~iwd~~~~~~~~~~~----~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~ 96 (304)
..+++|+++|.++++ +..++.|.+||..+++...... ++...+.++++.++ ++++++...+ . +..
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~--l~~ 96 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-G--LLV 96 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-E--EEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-C--EEE
Confidence 578999999998888 6788999999987776432211 25577899999999 7766655433 3 467
Q ss_pred eeeCCCeeEeE-Eecc--ceeeceeeeEEcCCCCEEEEEeCC---------------CeEEEecCCccccceeccCcccc
Q psy4754 97 FDLRADKEVAC-YKKD--SILFGATSVDFSVSGRLLFAGYND---------------YTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 97 wd~~~~~~~~~-~~~~--~~~~~~~~~~~s~~~~~l~sg~~d---------------g~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
||.. ++.... .... .....+..++++++++..++...+ +.|..||.. ++ ...+..+...
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~ 173 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVDTAFQF 173 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEEEEESS
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEeccCCCC
Confidence 8877 443222 1111 111235688999999877766544 578888754 32 2223333445
Q ss_pred eeEEEEc----CCCcEEE-EeecCCceEEEEeeec-CCce-----EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEE
Q psy4754 159 VSCLQVS----PDGTAFS-SGSWDTTLRCRLFDLR-ADKE-----VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 227 (304)
Q Consensus 159 v~~v~~s----p~~~~la-s~s~d~~i~i~~~d~~-~~~~-----~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~ 227 (304)
...++++ |+++.+. +...++.+ ++||.. .++. ...+.... ...+..++++++|+++++...++.|.
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i--~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKL--WSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEE--EEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeE--EEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcCCCEEE
Confidence 6889999 9996554 44456664 678875 3321 11111110 02357789999999999888888999
Q ss_pred EEeCCCceeeEEeeccccceEEEEEccCCC-EEEEeecCCeeeeccccc
Q psy4754 228 VWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 228 iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~ 275 (304)
+||..+++.+..+..+...+.+++|+|+|+ .+++...++.|..++...
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999886777777777778899999999999 555555667888777653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.1e-14 Score=132.51 Aligned_cols=223 Identities=11% Similarity=0.002 Sum_probs=153.0
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCc----------------EEEEeCCCcee----eeee
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT----------------INVWDSLKCCR----VNHL 64 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~----------------v~iwd~~~~~~----~~~~ 64 (304)
+|++||+.+++...... ....+..++|+|||+.|+.++.++. |++|++.+++. +...
T Consensus 152 ~i~v~d~~tg~~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~ 228 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (710)
T ss_dssp EEEEEETTTTEEEEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEECCCCCCCcccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence 89999999998754211 1122678999999999988888776 99999987652 2222
Q ss_pred cCCcCcEEEEEECCCCCeEEEEeCCC---ceEEEEeeeCC------Ce-eEeEEeccceeeceeeeEEcCCCCEEEEEeC
Q psy4754 65 MGHENRVSCLQVSPDGTAFSSGSWDT---TLRCRLFDLRA------DK-EVACYKKDSILFGATSVDFSVSGRLLFAGYN 134 (304)
Q Consensus 65 ~~h~~~V~~l~~s~d~~~l~sgs~D~---~i~~~~wd~~~------~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~ 134 (304)
..|...+..+.|+|||++|+..+.+. .-.+++||+.. +. ....+..... .. ...++++++.++..+.
T Consensus 229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE--GE-YDYVTNEGTVFTFKTN 305 (710)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS--SC-EEEEEEETTEEEEEEC
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC--cE-EEEEeccCCEEEEEEC
Confidence 33566788999999999888776522 23468899875 32 2333332211 11 2247888888877655
Q ss_pred C----CeEEEecCCccc--cceeccCccc--ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeee
Q psy4754 135 D----YTINVWDSLKCC--RVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGAT 206 (304)
Q Consensus 135 d----g~i~iwd~~~~~--~~~~~~~h~~--~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~ 206 (304)
. +.|.+||+.+.. ....+..|.. .+..++|++++.++++...|+..++++|++.+++.+..+... ...+.
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~ 383 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVV 383 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEE
Confidence 3 369999987653 2345555544 678899998888899999999877788888666655544433 23457
Q ss_pred EEEEcCCCCEEEEE-e---CCCcEEEEeCCCce
Q psy4754 207 SVDFSVSGRLLFAG-Y---NDYTINVWDSLKCC 235 (304)
Q Consensus 207 ~~~~s~~g~~l~sg-~---~d~~i~iwd~~~~~ 235 (304)
.++++|+++.++.. + ..++|..||+.+++
T Consensus 384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 78899999766543 2 23689999987765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-14 Score=120.24 Aligned_cols=233 Identities=9% Similarity=-0.015 Sum_probs=159.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc-----CcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-----NRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-----~~V~~l~~s 77 (304)
+++|.+||..+++.+..+.. ......+++++++.++++...++.|.+||+.+++....+.... .....+++
T Consensus 63 ~~~v~viD~~t~~~~~~i~~---~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRITG---FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp GTEEEEEETTTCCEEEEEEC---CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CCEEEEEECcccEEEEEcCC---CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 57899999999988766531 2347889999998666666589999999999988776654322 14456777
Q ss_pred CCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC----------CeEEEecCCcc
Q psy4754 78 PDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----------YTINVWDSLKC 146 (304)
Q Consensus 78 ~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----------g~i~iwd~~~~ 146 (304)
.+++.+++.. .+++ +.++|..+.+....+.... ....+.++++++++++...+ +.|.++|..+.
T Consensus 139 ~~~~lyv~~~~~~~~--v~viD~~t~~~~~~i~~g~---~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNR--ILKIDTETDKVVDELTIGI---QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp ETTEEEEEECTTCCE--EEEEETTTTEEEEEEECSS---CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCE--EEEEECCCCeEEEEEEcCC---CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence 3444444433 3666 4789998887766654322 24578899999877766544 78999998877
Q ss_pred ccceeccCc-ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE--EeecCceeeeeeEEEEcC-CCCEEEEE--
Q psy4754 147 CRVNHLMGH-ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSV-SGRLLFAG-- 220 (304)
Q Consensus 147 ~~~~~~~~h-~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~-~g~~l~sg-- 220 (304)
+....+.-. ...+..++++|+++.+..+.. . +.++|..+++... ..... ...+..++++| ++.++++.
T Consensus 214 ~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~--v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D--IWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp EEEEEEECCTTCCCEEEEECTTSCEEEEESS--S--EEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECT
T ss_pred eEEEEEecCCCCCceeEEEecCCCEEEEEcc--E--EEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEccc
Confidence 655444321 236889999999988777654 4 4689987766421 11110 12457899999 66777776
Q ss_pred --eCCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 221 --YNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 221 --~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
..++.|.+||.. ++.+.++..- .....++|
T Consensus 288 ~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 288 DYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp TSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred ccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 677899999987 7777776532 23345555
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-13 Score=112.13 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=163.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~ 80 (304)
++++|.+||..+++.+-.+..+.. ..+.+++++|+|+++++ .++.|..||. +++.+..+..+ ...+.++.+.++|
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG 88 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG 88 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC
Confidence 578999999999998766654321 24788999999999983 5778999999 78888777765 3578899999999
Q ss_pred CeEEEEeC-CCceEEEEeeeCCCeeEeEEeccce----eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 81 TAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSI----LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 81 ~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
+.+++.+. ++. +..+|. +++.+..+..... ......+.+.++++++++...++.|..||.. ++.+-++...
T Consensus 89 ~~lv~~~~~~~~--v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~ 164 (276)
T 3no2_A 89 NALVAWCGHPST--ILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS 164 (276)
T ss_dssp CEEEEEESTTEE--EEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS
T ss_pred CEEEEecCCCCE--EEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC
Confidence 99999876 433 345564 5666665543211 1123356778999999999999999999987 7766665543
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc----eeeeeeEEEEcCCCCEEEEEeCC--------
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----ILFGATSVDFSVSGRLLFAGYND-------- 223 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~sg~~d-------- 223 (304)
..+.++.+.++++.+++++.++.+ ..+|..+++.+-.+.... ....+..++..++|.++++....
T Consensus 165 -~~~~~~~~~~~g~~~v~~~~~~~v--~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~ 241 (276)
T 3no2_A 165 -GTPFSSAFLDNGDCLVACGDAHCF--VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKG 241 (276)
T ss_dssp -SCCCEEEECTTSCEEEECBTTSEE--EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGS
T ss_pred -CCccceeEcCCCCEEEEeCCCCeE--EEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccccccc
Confidence 456678889999999988877764 588988788766664322 12336788889999998887532
Q ss_pred CcEEEEeC-CCceeeEEeec
Q psy4754 224 YTINVWDS-LKCCRVNHLMG 242 (304)
Q Consensus 224 ~~i~iwd~-~~~~~~~~~~~ 242 (304)
+..+++++ .+++.+-++..
T Consensus 242 ~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 242 KHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CCCSEEEECTTSBEEEEECC
T ss_pred CCceEEEECCCCCEEEEecC
Confidence 12344444 34555555544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-14 Score=133.72 Aligned_cols=243 Identities=15% Similarity=0.025 Sum_probs=158.3
Q ss_pred ceeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCce----------
Q psy4754 28 GATSVDFSVSGRLLFAGYND-----YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL---------- 92 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~d-----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i---------- 92 (304)
.+..++|||||++||.++.+ .+|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|...
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 57889999999998876554 4699999999876543 112222357899999 988888876642
Q ss_pred --EEEEeeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc-c-ceeccCcccceeE
Q psy4754 93 --RCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC-R-VNHLMGHENRVSC 161 (304)
Q Consensus 93 --~~~~wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~-~-~~~~~~h~~~v~~ 161 (304)
++++|++.+... ...+...........+.++|||++++....+ ..|.+||+.++. . ...+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 367899876542 2223222111114578899999998887654 389999986641 2 4455555555555
Q ss_pred EEEcCCCcEEEEeecCC--ceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-Ccee
Q psy4754 162 LQVSPDGTAFSSGSWDT--TLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCR 236 (304)
Q Consensus 162 v~~sp~~~~las~s~d~--~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~ 236 (304)
. ++|+++.|+..+.++ ..++++||+.+. +....+..... .+..++++ ++.++++...|+..+||... ++..
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~--~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD--NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS--EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC--eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc
Confidence 4 348888888776543 334578888764 22222322221 23456666 66778888888887777543 3455
Q ss_pred eEEeec-cccceEEEEEccCCCEEE----EeecCCeeeecccccc
Q psy4754 237 VNHLMG-HENRVSCLQVSPDGTAFS----SGSWDTTLRDEESKNR 276 (304)
Q Consensus 237 ~~~~~~-h~~~i~~l~~sp~g~~la----sgs~D~~i~~~~~~~~ 276 (304)
+..+.. +.+.|..++++|++..|+ +.....+|.+|+...+
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 566654 367889999999988666 3334578888887554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-12 Score=107.99 Aligned_cols=257 Identities=8% Similarity=0.014 Sum_probs=167.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~ 80 (304)
+++.|.+||.. ++... +........+.++++.++|.++++...++.|..||.. ++... .+......+.++++.+++
T Consensus 39 ~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g 115 (300)
T 2qc5_A 39 KANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG 115 (300)
T ss_dssp TTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT
T ss_pred CCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC
Confidence 35678999988 54432 2222223458899999999988887778999999987 54322 222234678899999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce-eccCcccce
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRV 159 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v 159 (304)
+++++...++.+ ..+|.. ++.. .+........+..+.+.++++..++...++.|..+|. +++... ....+...+
T Consensus 116 ~l~v~~~~~~~i--~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 190 (300)
T 2qc5_A 116 DIWFTQLNGDRI--GKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAP 190 (300)
T ss_dssp CEEEEETTTTEE--EEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CEEEEccCCCeE--EEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCc
Confidence 988877656664 567765 3332 2222111123567889999986666666789999997 333221 122344568
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN- 238 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~- 238 (304)
.+++++++++.+++....+.+ ..+|. +++... +........+.++++.++|+++++...++.|..||.. +....
T Consensus 191 ~~i~~d~~g~l~v~~~~~~~i--~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 265 (300)
T 2qc5_A 191 VGITSGNDGALWFVEIMGNKI--GRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEY 265 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEE--EEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ceEEECCCCCEEEEccCCCEE--EEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEE
Confidence 899999999877766555554 57777 333322 2111112346789999999988777667899999974 43221
Q ss_pred EeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 239 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 239 ~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.+......+.+++++++|..+++.. . .|..+++
T Consensus 266 ~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 266 QLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2233456789999999999877765 4 5554443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-13 Score=118.29 Aligned_cols=239 Identities=10% Similarity=0.051 Sum_probs=162.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
....++|+++|.++++...++.|++||..++........... .. ++|+++++.|+.+..++..+++.++.........
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 367899999999888888889999999987765544433222 23 8999999999888876643357777765443322
Q ss_pred E-ec-cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee----ccCcccce--eEEEEcCC-CcEEEEeecCC
Q psy4754 108 Y-KK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH----LMGHENRV--SCLQVSPD-GTAFSSGSWDT 178 (304)
Q Consensus 108 ~-~~-~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~h~~~v--~~v~~sp~-~~~las~s~d~ 178 (304)
. .. ......+..++++|++..|+.+..++.|..||..+...... ..++.... ..++|+|+ +.++++-..++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 2 00 00112356789999666677777789999999875432111 12222222 39999995 66666666666
Q ss_pred ceEEEEeeecCCceEEEeecCc-------------eeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCceeeEEeecc-
Q psy4754 179 TLRCRLFDLRADKEVACYKKDS-------------ILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGH- 243 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~~~~~~~h- 243 (304)
.| +.|+.... +..+.... ....+..++++|+|+++++-. .++.|+.|+..++. +.++.++
T Consensus 290 ~I--~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~ 364 (409)
T 3hrp_A 290 SV--YKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQV 364 (409)
T ss_dssp EE--EEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECT
T ss_pred EE--EEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCC
Confidence 64 56776543 22221110 012367899999999888887 88999999977765 4555555
Q ss_pred --------------ccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 244 --------------ENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 244 --------------~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
-.....|+++|+|.++++-+.+..||-+.+
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246899999999999999988889886643
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-12 Score=106.36 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=164.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
.....++++.++|.++++...++.|.+||.. ++... .+..+...+.++++.++++++++...++.+ ..+|.. ++.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v--~~~d~~-g~~ 94 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKI--GKLSKK-GGF 94 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE--EEECTT-SCE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeE--EEECCC-CCe
Confidence 3457899999999988888788999999987 54332 223344678999999999988876656664 567766 333
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-eeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
..+........+..+++.+++..+++...++.|..+|.. ++.. ..+......+.++++.|+++.+++...++.+ .
T Consensus 95 -~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i--~ 170 (300)
T 2qc5_A 95 -TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI--G 170 (300)
T ss_dssp -EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE--E
T ss_pred -EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE--E
Confidence 222221111235678889999877777668899999976 3322 1223334568899999999977766556654 5
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-EeeccccceEEEEEccCCCEEEEe
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
.+|. +++... +........+..+++.++|.++++....+.|.+|+. ++.... .+..+...+.+++++++|..+++.
T Consensus 171 ~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 171 RITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp EECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 7776 333322 322111234678999999998888777778999998 443332 233355678999999999988887
Q ss_pred ecCCeeeecccccc
Q psy4754 263 SWDTTLRDEESKNR 276 (304)
Q Consensus 263 s~D~~i~~~~~~~~ 276 (304)
..++.|..++....
T Consensus 248 ~~~~~i~~~~~~g~ 261 (300)
T 2qc5_A 248 WGANQIGRITNDNT 261 (300)
T ss_dssp TTTTEEEEECTTSC
T ss_pred cCCCeEEEECCCCc
Confidence 77789998887433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-12 Score=110.41 Aligned_cols=256 Identities=9% Similarity=-0.010 Sum_probs=165.2
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC-------
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH------- 67 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h------- 67 (304)
+|.+||..+++.+..++.. ..- .++|+|||++++.+. .++.|.+||..+++.+..+..-
T Consensus 48 ~v~v~D~~t~~~~~~i~~g---~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGG---FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeEEEEecCC---CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 8899999999877655432 122 799999999888775 3678999999888776654321
Q ss_pred cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeE-EeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecC
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDS 143 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~ 143 (304)
...-..++|+|||++|+.+.. +.+ +.++| .+.+.+.. +... .++.+.+++ ..+++.+.||.+.++|.
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~--v~viD-~t~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPA--VGLVV-QGGSSDDQLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCe--EEEEE-CCCCEEeEEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 123457899999999998774 355 46789 87776654 3321 123444554 44566678999999998
Q ss_pred Cccccceecc-----Ccccce-eEEEEcCCCcEEEEeecCCceEEEEeeecCCc--eEEEeecCc--------eeeeeeE
Q psy4754 144 LKCCRVNHLM-----GHENRV-SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK--EVACYKKDS--------ILFGATS 207 (304)
Q Consensus 144 ~~~~~~~~~~-----~h~~~v-~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~--~~~~~~~~~--------~~~~~~~ 207 (304)
+++...... ....++ ....+.+++..++..+.++.+ .+.|+.... .+..+.... ...+...
T Consensus 195 -~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v--~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 271 (373)
T 2mad_H 195 -AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKI--LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ 271 (373)
T ss_pred -CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceE--EEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence 654432111 111121 223456665444433455554 567775442 122221100 0111234
Q ss_pred EEEcCCCCEEEEEeC----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEEee-cCCeeeeccccc
Q psy4754 208 VDFSVSGRLLFAGYN----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGS-WDTTLRDEESKN 275 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs-~D~~i~~~~~~~ 275 (304)
+.++|+++.+..+.. .+.|.++|..+.+.+.++.. .....+++|+|||+ .+.++. .+++|.++|...
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 778999887777543 35799999999998888854 33579999999999 777776 489999999765
Q ss_pred cc
Q psy4754 276 RY 277 (304)
Q Consensus 276 ~~ 277 (304)
..
T Consensus 351 ~~ 352 (373)
T 2mad_H 351 GD 352 (373)
T ss_pred CC
Confidence 43
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-13 Score=110.61 Aligned_cols=222 Identities=9% Similarity=0.031 Sum_probs=146.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~ 80 (304)
+++.|.+||..++..... . ......+.++++.++|.++++.. ++.|.+||....... .+. .....+..+++.++|
T Consensus 44 ~~~~i~~~~~~~~~~~~~-~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g 119 (270)
T 1rwi_B 44 MYGRVVKLATGSTGTTVL-P-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQG 119 (270)
T ss_dssp SSCEEEEECC-----EEC-C-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTC
T ss_pred CCCcEEEecCCCcccceE-e-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCC
Confidence 356788888876543221 1 11123478899999999777766 889999998765432 222 233678899999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
+++++...++.| ..|+........ ........+..++++++++.+++...++.|.+||............+...+.
T Consensus 120 ~l~v~~~~~~~i--~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 195 (270)
T 1rwi_B 120 AVYVADRGNNRV--VKLAAGSKTQTV--LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW 195 (270)
T ss_dssp CEEEEEGGGTEE--EEECTTCCSCEE--CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE
T ss_pred CEEEEECCCCEE--EEEECCCceeEe--eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce
Confidence 988877667765 556654433221 1111112356788999998777666688999999776543332233446788
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
+++++|+|..+++...++.+ ..|+........ ..... ...+.+++++|+|+++++...++.|++++....+
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v--~~~~~~~~~~~~-~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQV--VKLLAGSTTSTV-LPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEECTTCCEEEEETTTSCE--EEECTTCSCCEE-CCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEEECCCCCEEEEECCCCcE--EEEcCCCCccee-eccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999999887777667775 578876543322 21111 1346889999999999998889999999876544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-12 Score=106.87 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=148.6
Q ss_pred eeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.-+..|+++ +.++++...++.|..||..+++.. .+ .....+.++++.++|+++++. +.. +..||..+++....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~~--~~~--l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVATI--GTK--FCALNWKEQSAVVL 88 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEEE--TTE--EEEEETTTTEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEEE--CCe--EEEEECCCCcEEEE
Confidence 357889985 557778888999999999876542 22 245679999999999966553 344 46788876654332
Q ss_pred Eecc--ceeeceeeeEEcCCCCEEEEEeC-----------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE-E
Q psy4754 108 YKKD--SILFGATSVDFSVSGRLLFAGYN-----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-S 173 (304)
Q Consensus 108 ~~~~--~~~~~~~~~~~s~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s 173 (304)
.... .....+..+.++++|++.++... .+.|..+|.. + .+..+..+......++|+||++.++ +
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-H-HVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S-CEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-C-CEEEEeeccccccceEEcCCCCEEEEe
Confidence 2211 11123567889999996665422 2345555543 2 2222333445578899999998665 4
Q ss_pred eecCCceEEEEeee--cCCceE--EEee-cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE
Q psy4754 174 GSWDTTLRCRLFDL--RADKEV--ACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 248 (304)
Q Consensus 174 ~s~d~~i~i~~~d~--~~~~~~--~~~~-~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~ 248 (304)
.+.++.| +.|++ .++... ..+. .......+..+++.++|++.++...++.|..||..+++.+..+..+...++
T Consensus 167 ~~~~~~i--~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 167 DSLSYSV--DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EGGGTEE--EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred cCCCCcE--EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 4555664 57876 333321 1111 111112457889999999998888888999999988888888888878899
Q ss_pred EEEEc-cCCCEEEEee
Q psy4754 249 CLQVS-PDGTAFSSGS 263 (304)
Q Consensus 249 ~l~~s-p~g~~lasgs 263 (304)
+++|. |+++.|...+
T Consensus 245 ~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEESGGGCEEEEEE
T ss_pred EEEEeCCCCCEEEEEc
Confidence 99998 8877554433
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-13 Score=112.33 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=138.1
Q ss_pred eeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
..+..+..+.....+++|+|+++ +++++..++.| ..||.... ...+.... ..+..++++++++++++...++.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i--~~~~~~~~--~~~~~~~~--~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRT--WAWSDDGQ--LSPEMHPS--HHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEE--EEEETTSC--EEEEESSC--SSEEEEEECTTCCEEEEETTTTE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEE--EEEECCCC--eEEEECCC--CCcceeeECCCCcEEEEecCCCe
Confidence 34455555667788999999998 77788778774 68998765 33443322 23568899999998777766789
Q ss_pred EEEecCCccccceecc---Cc-ccceeEEEEcCCCcEEEE----eecC-----------CceEEEEeeecCCceEEEeec
Q psy4754 138 INVWDSLKCCRVNHLM---GH-ENRVSCLQVSPDGTAFSS----GSWD-----------TTLRCRLFDLRADKEVACYKK 198 (304)
Q Consensus 138 i~iwd~~~~~~~~~~~---~h-~~~v~~v~~sp~~~~las----~s~d-----------~~i~i~~~d~~~~~~~~~~~~ 198 (304)
|.+||..+++...... +. ...+..++++|+|+++++ ++.+ ....++.++.. ++ +..+..
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~ 169 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR 169 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence 9999986654322111 11 234678999999998887 3311 11123445544 33 222222
Q ss_pred CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-Ccee---eEEeeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 199 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCR---VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 199 ~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~---~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
. ...++.++|+|+|+.+++...++.|.+|+.. ++.. ...+..+...+.+++++++|+++++. ++.|..|+.+
T Consensus 170 ~--~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 170 D--RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp C--CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred C--CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 2 1245789999999999777778899999976 3332 22333355667889999999988777 8899999875
Q ss_pred cc
Q psy4754 275 NR 276 (304)
Q Consensus 275 ~~ 276 (304)
..
T Consensus 246 g~ 247 (296)
T 3e5z_A 246 GD 247 (296)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-12 Score=118.22 Aligned_cols=228 Identities=16% Similarity=0.072 Sum_probs=159.6
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC--CCeeEeEEeccce
Q psy4754 36 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR--ADKEVACYKKDSI 113 (304)
Q Consensus 36 ~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~--~~~~~~~~~~~~~ 113 (304)
+.+.++++...+++|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.+ .+||+. +.+.+..+....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V--~viD~~~~t~~~v~~i~~G~- 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKV--NMIDLWMKEPTTVAEIKIGS- 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEE--EEEETTSSSCCEEEEEECCS-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeE--EEEECCCCCCcEeEEEecCC-
Confidence 44567788889999999999999888877643 345689999999999999988874 789985 555555544322
Q ss_pred eeceeeeEEc----CCCCEEEEEeC-CCeEEEecCCccccceeccC----------ccc-ceeEEEEcCCCcEEEEe-ec
Q psy4754 114 LFGATSVDFS----VSGRLLFAGYN-DYTINVWDSLKCCRVNHLMG----------HEN-RVSCLQVSPDGTAFSSG-SW 176 (304)
Q Consensus 114 ~~~~~~~~~s----~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~v~~sp~~~~las~-s~ 176 (304)
....++|+ |+++++++++. ++.|.++|..+.+.+.++.- |.. .+..+.+++++..++.. ..
T Consensus 241 --~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 241 --EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 24578899 69999888765 59999999888776655431 222 57888899987655544 34
Q ss_pred CCceEEEEeeecCCceEE--EeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCceeeEEeec-----cccceE
Q psy4754 177 DTTLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMG-----HENRVS 248 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~~~~~~~-----h~~~i~ 248 (304)
++. ++++|....+.+. .+.... ....+.|+|+|++++++. .+++|.++|..+++.+..+.- |.++-.
T Consensus 319 ~g~--v~~vd~~~~~~~~v~~i~~~~---~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~ 393 (567)
T 1qks_A 319 TGK--ILLVDYTDLNNLKTTEISAER---FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 393 (567)
T ss_dssp TTE--EEEEETTCSSEEEEEEEECCS---SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred CCe--EEEEecCCCccceeeeeeccc---cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence 455 4678876654322 222221 235678999999987755 568899999999887766543 433222
Q ss_pred EEEEccC-CCEEEEee-cCCeeeeccccc
Q psy4754 249 CLQVSPD-GTAFSSGS-WDTTLRDEESKN 275 (304)
Q Consensus 249 ~l~~sp~-g~~lasgs-~D~~i~~~~~~~ 275 (304)
.+ ++|+ +..++++. .+++|.+++.++
T Consensus 394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 394 NF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 22 5887 45555654 368999998765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-13 Score=127.16 Aligned_cols=231 Identities=10% Similarity=-0.046 Sum_probs=148.0
Q ss_pred cCCCCEEEEeeCCC---cEEEEeC--CCceeeeee------cCCcCcEEEEEECCCCCeEE-----EEeCCCceEEEEee
Q psy4754 35 SVSGRLLFAGYNDY---TINVWDS--LKCCRVNHL------MGHENRVSCLQVSPDGTAFS-----SGSWDTTLRCRLFD 98 (304)
Q Consensus 35 ~~~g~~l~tg~~dg---~v~iwd~--~~~~~~~~~------~~h~~~V~~l~~s~d~~~l~-----sgs~D~~i~~~~wd 98 (304)
+|+|++++-...++ .-.||-. ..++...-+ .+|...+..++|||||++|+ +|+.+.+ +++||
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~--i~v~d 153 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV--LHVID 153 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE--EEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE--EEEEE
Confidence 37888776555543 3455553 333221111 24656789999999999888 3444455 58999
Q ss_pred eCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe-------------EEEecCCccc----cceeccCcccceeE
Q psy4754 99 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-------------INVWDSLKCC----RVNHLMGHENRVSC 161 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~-------------i~iwd~~~~~----~~~~~~~h~~~v~~ 161 (304)
+.+++.+....... .....++|+||++.|+.++.+.. |++|++.+.. .+.+...|...+..
T Consensus 154 l~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 154 VDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 98876541001110 01157899999999999988776 9999988765 23333456667889
Q ss_pred EEEcCCCcEEEEeecCC--ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe---CCCcEEEEeCCCcee
Q psy4754 162 LQVSPDGTAFSSGSWDT--TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDSLKCCR 236 (304)
Q Consensus 162 v~~sp~~~~las~s~d~--~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~---~d~~i~iwd~~~~~~ 236 (304)
+.|+|||+.++..+.++ ...+++++..+++......... ......+ ++|.+++... .++.|.+||+.++..
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~---~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~ 307 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG---AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR 307 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS---CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC---ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence 99999999888777655 4445677665444332222221 1233445 5666544443 257899999876542
Q ss_pred --eEEeecc--ccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 237 --VNHLMGH--ENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 237 --~~~~~~h--~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
...+..| ...+..++|+ ++..+++...|+..++|..+
T Consensus 308 ~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 308 ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 2334333 4568889998 77889999999999988654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-12 Score=109.55 Aligned_cols=279 Identities=10% Similarity=0.052 Sum_probs=177.4
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC-----
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH----- 67 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h----- 67 (304)
+++|-+.|..+++.+..++.-.. -. ++++|||++++.+. .++.|.+||..+++.+..+...
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~---P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL---PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS---CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC---Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 57899999999998877664322 23 99999999776654 3678999999999887766421
Q ss_pred --cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 68 --ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 68 --~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
...-..++|+|||++|+.+.. +++ +.++|+.+.+.+..+..... ...+....+.+++.+.||.+.+.++
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~--VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPA--VGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCe--EEEEECCCCcEEEEEECCCc-----ceeecCCCceeEEECCCCCEEEEEC
Confidence 113346899999998887764 566 47899999888876643221 1223334456667777777777776
Q ss_pred Cc-cccceeccCc----cccee-EEEE-cCCCcEEEEeecCCceEEEEeeecCCce--EEEee--------cCceeeeee
Q psy4754 144 LK-CCRVNHLMGH----ENRVS-CLQV-SPDGTAFSSGSWDTTLRCRLFDLRADKE--VACYK--------KDSILFGAT 206 (304)
Q Consensus 144 ~~-~~~~~~~~~h----~~~v~-~v~~-sp~~~~las~s~d~~i~i~~~d~~~~~~--~~~~~--------~~~~~~~~~ 206 (304)
.+ +....+...+ ..++. ...| .++|+++. .+.++.+ .+.|..+... ...+. ......+..
T Consensus 207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V--~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q 283 (386)
T 3sjl_D 207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKI--HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 283 (386)
T ss_dssp CSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEE--EEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred CCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEE--EEEECCCCcceeecceeccccccccccccCCCcc
Confidence 54 2221111111 11221 2355 47886544 3446764 5788865542 22221 000111223
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEE-eecCCeeeecccc
Q psy4754 207 SVDFSVSGRLLFAGYN----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSS-GSWDTTLRDEESK 274 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las-gs~D~~i~~~~~~ 274 (304)
.++++|+++.+..... .+.|.+.|..+.+.+.++.-- .++++|+|+||++ +|.+ ...+++|.++|..
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 4677899888777542 257999999999988887542 3788999999996 5555 4558999999875
Q ss_pred ccchhheeeccccCCceeEEEEEecC
Q psy4754 275 NRYMQYLLRSRITKPTQGLTVYFQDR 300 (304)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (304)
... ...++..+..+..+.+++|
T Consensus 363 t~k----~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 363 SGE----ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TCC----EEEEECCCCSSCCEEEECC
T ss_pred CCc----EEEEecCCCCCceeEECCc
Confidence 432 2344444444555555554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-12 Score=110.73 Aligned_cols=239 Identities=8% Similarity=0.007 Sum_probs=153.2
Q ss_pred ceeEEEEcCCCCEEEEee--CCCcEEEEeCCCceee------eeecCCcCcEEEEEECCCCCeEEEEeC-----CCceEE
Q psy4754 28 GATSVDFSVSGRLLFAGY--NDYTINVWDSLKCCRV------NHLMGHENRVSCLQVSPDGTAFSSGSW-----DTTLRC 94 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~--~dg~v~iwd~~~~~~~------~~~~~h~~~V~~l~~s~d~~~l~sgs~-----D~~i~~ 94 (304)
....++++++|+++++.. .++.++||.+.+++.. .....|-..+..+++.++++++++... +.. +
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~--i 95 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK--L 95 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE--E
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe--E
Confidence 468899999999998863 2443556655445432 111235578999999999887766433 344 4
Q ss_pred EEeeeCCCeeEeEEeccce----eeceeeeEEcCCCCEEEEEe----CCCeEEEecCCccccceeccCcc----------
Q psy4754 95 RLFDLRADKEVACYKKDSI----LFGATSVDFSVSGRLLFAGY----NDYTINVWDSLKCCRVNHLMGHE---------- 156 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~h~---------- 156 (304)
..||+.+++.+..+..... ......+++++++..++.+. .++.|.+||..+++....+.+|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 7899988876665543211 01236788988665665543 57899999987654433332211
Q ss_pred -------------------cceeEEEEcCCCcEEEEeecCCceEEEEeeecC---Cc--------eEEEeecCceeeeee
Q psy4754 157 -------------------NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA---DK--------EVACYKKDSILFGAT 206 (304)
Q Consensus 157 -------------------~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~---~~--------~~~~~~~~~~~~~~~ 206 (304)
..+..|+++||++.++.+..++. +++.++... .. .+... .+ ...+.
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~--~g~pd 251 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY-SE--KPICD 251 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE-EE--CCSCS
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec-cc--CCCCc
Confidence 23688999999998888777664 123333221 00 00110 00 01246
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-cccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 207 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
.++++++|.++++...++.|.+||..+++....... +...+.+++|.++|.++++.+....+..+.
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 789999999999998899999999845543222222 245789999999999999887766665554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-10 Score=100.36 Aligned_cols=221 Identities=13% Similarity=0.028 Sum_probs=145.6
Q ss_pred eeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
..+..|+|++ .++++...++.|..||..+++... +. ....+.++++.++|+++++. .++ +.+||..+++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~g---l~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DDG---LFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TTE---EEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CCC---EEEEECCCCcEEEE
Confidence 3578899974 567788788999999998775432 22 34679999999999887765 333 46788876654322
Q ss_pred Eeccc--eeeceeeeEEcCCCCEEEEEeC------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEe-ecCC
Q psy4754 108 YKKDS--ILFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDT 178 (304)
Q Consensus 108 ~~~~~--~~~~~~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~-s~d~ 178 (304)
..... ....+..+.++++++++++... .+.|..++ +++ +..+..+......++|+||++.++.+ +.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 22110 1123567889999987665432 25566666 332 22233333456789999999876544 4455
Q ss_pred ceEEEEeeec--CC-c-----eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEE
Q psy4754 179 TLRCRLFDLR--AD-K-----EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 250 (304)
Q Consensus 179 ~i~i~~~d~~--~~-~-----~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l 250 (304)
. +++||+. ++ + .+..+... ...+..+++.++|.+.++...++.|..||. +++.+..+..+...+.++
T Consensus 202 ~--I~~~d~~~~~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 202 R--LMRVPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp E--EEEEEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred E--EEEEEcccccCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 5 4678875 43 2 11112111 123467889999998888777789999998 566777777777789999
Q ss_pred EEc-cCCCEEEEee
Q psy4754 251 QVS-PDGTAFSSGS 263 (304)
Q Consensus 251 ~~s-p~g~~lasgs 263 (304)
+|+ |++..|..++
T Consensus 277 af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 277 AFIGPDASRLLVTS 290 (326)
T ss_dssp EEESTTSCEEEEEE
T ss_pred EEecCCCCEEEEEe
Confidence 998 8887665444
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-11 Score=115.67 Aligned_cols=231 Identities=13% Similarity=0.018 Sum_probs=145.3
Q ss_pred cCCCCEEEEeeCCCc---EEEEeCC-----Cceeeeee-------cCCcCcEEEEEECCCCCeEEEEeCC-Cc--eEEEE
Q psy4754 35 SVSGRLLFAGYNDYT---INVWDSL-----KCCRVNHL-------MGHENRVSCLQVSPDGTAFSSGSWD-TT--LRCRL 96 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~---v~iwd~~-----~~~~~~~~-------~~h~~~V~~l~~s~d~~~l~sgs~D-~~--i~~~~ 96 (304)
+|+|++++-...++. -.+|... .++ .+.+ .+|...+..++|||||++|+.++.+ +. ..+++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 388887775554433 5566543 222 2221 2344468899999999998876643 33 34689
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe--------------EEEecCCcccc----ceeccCcccc
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT--------------INVWDSLKCCR----VNHLMGHENR 158 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~--------------i~iwd~~~~~~----~~~~~~h~~~ 158 (304)
||+.+++.+..... . .....+.|+|| +.|+.+..++. |++|++.+... +.....+...
T Consensus 194 ~dl~tg~~~~~~~~-~--~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 194 VGVADGKPLADELK-W--VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp EETTTCCEEEEEEE-E--EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EECCCCCCCCccCC-C--ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 99988776542111 1 11246889999 88888776554 88999876542 2222334446
Q ss_pred eeEEEEcCCCcEEEEeecCC---ceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC----CcEEEE
Q psy4754 159 VSCLQVSPDGTAFSSGSWDT---TLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVW 229 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~---~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d----~~i~iw 229 (304)
+..+.|+|||+.++..+.++ .-.+++||+.++ +....+..... ..... ++|+|+.|+..+.+ +.|.+|
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK--AQWDF-VDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC--ceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 88999999999888777543 234678998776 30222222111 11222 35889888877653 459999
Q ss_pred eCCCc-eeeEE-eeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 230 DSLKC-CRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 230 d~~~~-~~~~~-~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
|+.++ ..... +..+...+..++++ ++..+++...|+..++|..+
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 98774 12333 34455567778887 66788899999998888654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=118.06 Aligned_cols=239 Identities=18% Similarity=0.129 Sum_probs=150.3
Q ss_pred ceeEEEEcCCCCEEE-----EeeCCCcEEEEeCCCceeeeeecCCcCcE--EEEEECCCCCeEEEEeCCCc---------
Q psy4754 28 GATSVDFSVSGRLLF-----AGYNDYTINVWDSLKCCRVNHLMGHENRV--SCLQVSPDGTAFSSGSWDTT--------- 91 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~-----tg~~dg~v~iwd~~~~~~~~~~~~h~~~V--~~l~~s~d~~~l~sgs~D~~--------- 91 (304)
.+..++|||||++|| .|+...+|++||+.+++.+.. +...+ ..++|+ |++.|+.++.|..
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 478899999999887 344446899999999876542 22233 578999 9999888887743
Q ss_pred --eEEEEeeeCCCee--EeEEeccc-eeeceeeeEEcCCCCEEEEEe----CCCeEEEecCCccc-cceeccCcccceeE
Q psy4754 92 --LRCRLFDLRADKE--VACYKKDS-ILFGATSVDFSVSGRLLFAGY----NDYTINVWDSLKCC-RVNHLMGHENRVSC 161 (304)
Q Consensus 92 --i~~~~wd~~~~~~--~~~~~~~~-~~~~~~~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~-~~~~~~~h~~~v~~ 161 (304)
-++++|++.+... ...+.... .......+.++||+++++... ....|.++|+.+.. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 3367899876542 22333222 111134678999999886543 23589999987653 34455556555555
Q ss_pred EEEcCCCcEEE-EeecCC-ceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCc
Q psy4754 162 LQVSPDGTAFS-SGSWDT-TLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDY---TINVWDSLKC 234 (304)
Q Consensus 162 v~~sp~~~~la-s~s~d~-~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~---~i~iwd~~~~ 234 (304)
. +++++..|+ ....+. ..++..+|+.+... ...+..+.. .+. .|++++++|+....+. .|++|+...+
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 4 566665554 444442 24456788876543 122222221 122 7899999887765443 6888998754
Q ss_pred eeeEEee-ccccceEEEEEccCCCEEEEeecC----Ceeeecccccc
Q psy4754 235 CRVNHLM-GHENRVSCLQVSPDGTAFSSGSWD----TTLRDEESKNR 276 (304)
Q Consensus 235 ~~~~~~~-~h~~~i~~l~~sp~g~~lasgs~D----~~i~~~~~~~~ 276 (304)
....+. .+.+.+..+.++|++..|+....+ .+|..++...+
T Consensus 361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 344443 244677888888988876655444 67777776443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-11 Score=101.92 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=148.4
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.....|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+++.++|+++++...++.| ..||.. ++. ..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v--~~~~~~-g~~-~~ 120 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAI--TRSDAD-GQA-HL 120 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEE--EEECTT-SCE-EE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEE--EEECCC-CCE-EE
Confidence 56789999998 6778888999999998 443 34445566778999999999976665445554 567765 332 22
Q ss_pred Eec--c-ceeeceeeeEEcCCCCEEEE----EeC-------------CCeEEEecCCccccceeccCcccceeEEEEcCC
Q psy4754 108 YKK--D-SILFGATSVDFSVSGRLLFA----GYN-------------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 167 (304)
Q Consensus 108 ~~~--~-~~~~~~~~~~~s~~~~~l~s----g~~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~ 167 (304)
+.. . .....+..+.++++|...++ |.. .+.|..||..+++.. .+. .......++|+||
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RMA-DLDHPNGLAFSPD 198 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EEE-EESSEEEEEECTT
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-EEe-cCCCCcceEEcCC
Confidence 211 1 11123457889999997775 321 356888887554322 222 4456788999999
Q ss_pred CcEEEEeecC------CceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 168 GTAFSSGSWD------TTLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 168 ~~~las~s~d------~~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
++.++.+... +. ++.|++..... ...+... ....+..+++.++|++.++. .+ .|.+|+. .++.+..
T Consensus 199 g~~lyv~~~~~~~~~~~~--i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVE--ITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGH 272 (305)
T ss_dssp SSEEEEEECCC---CCCE--EEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEE
T ss_pred CCEEEEEecCCcCCCCCE--EEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEE
Confidence 9977766554 44 46788765431 1111110 01123568899999966554 34 5999997 5666777
Q ss_pred eeccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 240 ~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
+..+. .+.+++|+|+++.|..++.++..++
T Consensus 273 ~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 273 IPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 76555 6899999999988887777655554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-11 Score=107.34 Aligned_cols=259 Identities=9% Similarity=0.018 Sum_probs=168.0
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC------
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH------ 67 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h------ 67 (304)
++|-++|+.+++.+..++.-.. - .++++|||+.++.+. .++.|.++|..+++.+..+.--
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~---P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL---P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS---C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECCCC---C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 6899999999998877664432 2 799999999777665 4679999999999887765321
Q ss_pred -cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecC
Q psy4754 68 -ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 68 -~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~ 143 (304)
...-..+.|+|||++|+.+.. +++ +.+.|..+.+.+..+..... ....|+ ...+++.+.||.+.+.+.
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~--VsVID~~t~kvv~~I~v~g~------~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPA--VGVVDLEGKTFDRMLDVPDC------YHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCSE------EEEEEEETTEEEEEETTSSEEEEEC
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCe--EEEEECCCCeEEEEEEcCCc------eeeccCCCcEEEEEcCCCCEEEEEC
Confidence 122346799999999988775 355 47899998887766553211 112222 234455556666666665
Q ss_pred Cccccce----eccCcccce-eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE--EeecC--------ceeeeeeEE
Q psy4754 144 LKCCRVN----HLMGHENRV-SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA--CYKKD--------SILFGATSV 208 (304)
Q Consensus 144 ~~~~~~~----~~~~h~~~v-~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~--~~~~~--------~~~~~~~~~ 208 (304)
.+++... .+.-...++ ..+.+.+++..++..+..+.+ .+.|........ .+... ....+...+
T Consensus 247 ~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V--~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 247 ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKI--FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE--EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcE--EEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 3322211 111111111 235678888877666677764 578876543211 11100 001112236
Q ss_pred EEcCCCCEEEEEeC----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEEee-cCCeeeecccccc
Q psy4754 209 DFSVSGRLLFAGYN----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGS-WDTTLRDEESKNR 276 (304)
Q Consensus 209 ~~s~~g~~l~sg~~----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs-~D~~i~~~~~~~~ 276 (304)
+++|+++.+.+... .+.|.++|..+.+.+.++... ....+++|+|||+ ++.+.. .++.|.++|....
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 89999887666532 357999999999999888643 2578999999999 777776 5899999997554
Q ss_pred c
Q psy4754 277 Y 277 (304)
Q Consensus 277 ~ 277 (304)
.
T Consensus 404 k 404 (426)
T 3c75_H 404 E 404 (426)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-12 Score=112.70 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=128.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-----------eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-----------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
++..|++++...++++|+.|+. .+|++...+ ....... ..+..++| ++.+|+++ .++.|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l---~v~~~~~l~~~~~~~~~~~~~~~~~~l----p~V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKA---VVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEE---EEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEE--ETTEEEEE-ESSEE
T ss_pred cccEEEEcCCCCEEEEeCCCEE---EEEEhhHhhhhhccccccccceEEeeC----CCeeEEEE--CCCEEEEE-cCCcE
Confidence 6889999999999999999865 468764322 1111111 12678889 88999998 88999
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 218 (304)
++||+.+.........|..++.++.+.+. .+++++.|+.+ .+||+.+.+... ....+.+++|||+| ++
T Consensus 109 ~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L--~v~dl~~~~~~~------~~~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 109 YSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDL--SALDLRTKSTKQ------LAQNVTSFDVTNSQ--LA 176 (388)
T ss_dssp EEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEE--EEEETTTCCEEE------EEESEEEEEECSSE--EE
T ss_pred EEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCE--EEEEccCCcccc------ccCCceEEEEcCCc--eE
Confidence 99998765544455567777888877654 38889999996 689998766542 22468999999999 67
Q ss_pred EEeCCCcEEEEeCCCcee--eEEe------e---ccccceEEEEEccCCCEEEE
Q psy4754 219 AGYNDYTINVWDSLKCCR--VNHL------M---GHENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 219 sg~~d~~i~iwd~~~~~~--~~~~------~---~h~~~i~~l~~sp~g~~las 261 (304)
.|..||++++|+....+. .+++ . +|...|.+|.|.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 899999999998776654 4555 2 47889999999999998887
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-11 Score=105.33 Aligned_cols=252 Identities=8% Similarity=-0.078 Sum_probs=157.5
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCCc------
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGHE------ 68 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h~------ 68 (304)
+|-++|..+++.+..++.-.. . .+.|+|||+.++.+. .++.|.+||+.+++.+.++..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~--P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL--S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT--C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCC--C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 888999999999877765432 2 699999999777765 47899999999999888875331
Q ss_pred -CcEEEEEECCCCCeEEEEeCC--CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCC
Q psy4754 69 -NRVSCLQVSPDGTAFSSGSWD--TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSL 144 (304)
Q Consensus 69 -~~V~~l~~s~d~~~l~sgs~D--~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~ 144 (304)
..-..++++|||++|+.+..+ ..+.+.++|..+ +..+.... +..+.|+++ .+++.+.|+.+.+.|..
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS------CFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS------CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC------ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence 224478999999999887653 444322288765 33332111 111223332 34445567777777766
Q ss_pred c-----cccce----eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc--eEEEeecC--------ceeeee
Q psy4754 145 K-----CCRVN----HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK--EVACYKKD--------SILFGA 205 (304)
Q Consensus 145 ~-----~~~~~----~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~--~~~~~~~~--------~~~~~~ 205 (304)
+ ++... .+.-...+. . ++++..++..+. +.+ .+.|..... .+..+... ....+.
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V--~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSI--LQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCC--EEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEE--EEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 5 22211 111112232 3 555555554455 665 467775432 22222110 001111
Q ss_pred eEEEEcCCCCEEEEEeC---------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEEee-cCCeeeecccc
Q psy4754 206 TSVDFSVSGRLLFAGYN---------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGS-WDTTLRDEESK 274 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~---------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs-~D~~i~~~~~~ 274 (304)
..++++|+++.+..+.. +..+.++|..+.+.+.++.... ....++|+|||+ .+++.. .+++|.++|..
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 22679999988776532 2356799999998888876543 688999999997 566666 59999999986
Q ss_pred ccc
Q psy4754 275 NRY 277 (304)
Q Consensus 275 ~~~ 277 (304)
...
T Consensus 346 t~k 348 (368)
T 1mda_H 346 SDQ 348 (368)
T ss_dssp SCE
T ss_pred CCc
Confidence 543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-10 Score=96.21 Aligned_cols=221 Identities=8% Similarity=0.023 Sum_probs=140.5
Q ss_pred CceeEEeeccccceEeeeec--cccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeee-ec---C-CcCcEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKK--DSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNH-LM---G-HENRVSCL 74 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~--~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~-~~---~-h~~~V~~l 74 (304)
++.|..||+.+++....... ......+.+++++++ |.++++.. ...|.+||.. ++.... .. + +...+.++
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i 122 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDC 122 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEE
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCE
Confidence 56799999888765432110 012234889999999 77666554 4479999987 654322 11 1 12457899
Q ss_pred EECCCCCeEEEEeCCC-------------ceEEEEeeeCCCeeEeEEeccceeeceeeeEEc----CCCCEEEEE-eCCC
Q psy4754 75 QVSPDGTAFSSGSWDT-------------TLRCRLFDLRADKEVACYKKDSILFGATSVDFS----VSGRLLFAG-YNDY 136 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~-------------~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~sg-~~dg 136 (304)
++.++|+++++...++ ...+..+|.. ++....... ......++++ ++++.++.+ ..++
T Consensus 123 ~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~~i~~~~~~d~dg~~l~v~~~~~~ 198 (314)
T 1pjx_A 123 AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA---FQFPNGIAVRHMNDGRPYQLIVAETPTK 198 (314)
T ss_dssp EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE---ESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred EECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC---CCCcceEEEecccCCCCCEEEEEECCCC
Confidence 9999999888776541 1224556554 332221111 1124578889 998766555 4678
Q ss_pred eEEEecCC-ccc-----cceeccCcc-cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEE
Q psy4754 137 TINVWDSL-KCC-----RVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209 (304)
Q Consensus 137 ~i~iwd~~-~~~-----~~~~~~~h~-~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (304)
.|.+||.. ++. ....+.++. ..+..++++++|+++++...++.| ..||..+++.+..+.... ..+.+++
T Consensus 199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i--~~~d~~~g~~~~~~~~~~--~~~~~i~ 274 (314)
T 1pjx_A 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI--EVFGPDGGQPKMRIRCPF--EKPSNLH 274 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE--EEECTTCBSCSEEEECSS--SCEEEEE
T ss_pred eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE--EEEcCCCCcEeEEEeCCC--CCceeEE
Confidence 99999865 222 222334443 567889999999988887777765 578887555544443322 2468899
Q ss_pred EcCCCCEE-EEEeCCCcEEEEeCCC
Q psy4754 210 FSVSGRLL-FAGYNDYTINVWDSLK 233 (304)
Q Consensus 210 ~s~~g~~l-~sg~~d~~i~iwd~~~ 233 (304)
|+|+|+.| ++...++.|..|+...
T Consensus 275 ~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 275 FKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999955 4455567899998754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-10 Score=98.61 Aligned_cols=243 Identities=12% Similarity=0.007 Sum_probs=152.0
Q ss_pred CceeEEeeccccceEeeeeccc-----cccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS-----ILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
+++|.+||..+.+....+.... ....-..++|+|||++++.+.. ++.|.++|+.+++.+.++.... . ...
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~ 184 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHI 184 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-cee
Confidence 4579999999998876665321 0112456999999998877753 6899999999999888774321 1 122
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCC-CeeEeEEecc--ceeece-eeeEEc-CCCCEEEEEeCCCeEEEecCCccc--c
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKD--SILFGA-TSVDFS-VSGRLLFAGYNDYTINVWDSLKCC--R 148 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~--~~~~~~-~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~--~ 148 (304)
+....+.+++.+.|+.+ -..++.. .+........ .....+ ....|. +++++++ .+.+|.|.+.|+.+.. .
T Consensus 185 ~P~g~~~~~~~~~DG~~--~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSL--AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF 261 (386)
T ss_dssp EEEETTEEEEEETTSCE--EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred ecCCCceeEEECCCCCE--EEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence 33334566677777774 4566654 3322111100 000001 113443 5665444 6668999999986543 1
Q ss_pred ceecc---------C-cccceeEEEEcCCCcEEEEeecC--------CceEEEEeeecCCceEEEeecCceeeeeeEEEE
Q psy4754 149 VNHLM---------G-HENRVSCLQVSPDGTAFSSGSWD--------TTLRCRLFDLRADKEVACYKKDSILFGATSVDF 210 (304)
Q Consensus 149 ~~~~~---------~-h~~~v~~v~~sp~~~~las~s~d--------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (304)
+..+. + .......++++|+++.+.....+ ..=.++++|+.+.+.+..+.... .+.++++
T Consensus 262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lav 338 (386)
T 3sjl_D 262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINV 338 (386)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEE
T ss_pred ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEE
Confidence 21111 1 12334457889988877665421 11235789999999888776543 4679999
Q ss_pred cCCCC-EEEE-EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 211 SVSGR-LLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 211 s~~g~-~l~s-g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
+||++ +|++ ...+++|.++|..+++.++++..- +.-+.|.+++|
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 99997 5555 455899999999999988887642 22345666665
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-11 Score=105.82 Aligned_cols=173 Identities=12% Similarity=0.001 Sum_probs=121.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---------eee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---------RVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---------~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~w 97 (304)
.++.+++++...++++|+.++ +++|++.... ... ....+.. |+.++| |+++|+.+ .++. +++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~--l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNA--LYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSE--EEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCc--EEEE
Confidence 489999999999999999985 6669965432 111 1223556 999999 89999998 6776 4799
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d 177 (304)
|+.+........... ..+..+.+.+. .+++++.||.+.+||+.+..... +...|++++|+|+| ++.|..|
T Consensus 112 dv~sl~~~~~~~~~~--~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSEFRTVTSFE--KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTCEEEEEECS--SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EchhhhccCccceee--cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 987654333222211 12345554443 38889999999999998655432 45689999999999 6778889
Q ss_pred CceEEEEeeecCCce--EEEeec----C---ceeeeeeEEEEcCCCCEEEE
Q psy4754 178 TTLRCRLFDLRADKE--VACYKK----D---SILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~--~~~~~~----~---~~~~~~~~~~~s~~g~~l~s 219 (304)
+++ ++|+....+. ..++.. + .....+.++.|.+++.++++
T Consensus 182 g~i--~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 182 RSF--QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SCE--EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcE--EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 996 5788776653 344411 0 11256899999999999887
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-09 Score=92.37 Aligned_cols=206 Identities=15% Similarity=0.102 Sum_probs=133.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC----CcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----HENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~----h~~~V~~l~~s 77 (304)
..++|..||+.+++.. .+.. ...+.+++++++|.++++. +..|.+||..+++....... ....+..+++.
T Consensus 33 ~~~~i~~~d~~~~~~~-~~~~---~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d 106 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQVQ-RVTM---DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD 106 (297)
T ss_dssp TTTEEEEEETTTCCEE-EEEC---SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC
T ss_pred CCCEEEEEECCCCcEE-EEeC---CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC
Confidence 4678899999887653 2221 2348899999999966654 56899999987754322111 12457889999
Q ss_pred CCCCeEEEEeCC---------CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecC--Cc
Q psy4754 78 PDGTAFSSGSWD---------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDS--LK 145 (304)
Q Consensus 78 ~d~~~l~sgs~D---------~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~--~~ 145 (304)
|+|+++++...+ ... .+|.+........... .....+.++|+|+++.++.+ +.++.|.+||+ .+
T Consensus 107 ~dG~l~~~~~~~~~~~~~~~~~~~--~l~~~d~~g~~~~~~~--~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~ 182 (297)
T 3g4e_A 107 PAGRYFAGTMAEETAPAVLERHQG--ALYSLFPDHHVKKYFD--QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT 182 (297)
T ss_dssp TTSCEEEEEEECCSBTTBCCTTCE--EEEEECTTSCEEEEEE--EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred CCCCEEEecCCcccccccccCCCc--EEEEEECCCCEEEEee--ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence 999977765332 222 3555543222222111 11234678999999877554 55789999985 33
Q ss_pred cc-----cceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc-CCCCEEEE
Q psy4754 146 CC-----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFA 219 (304)
Q Consensus 146 ~~-----~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~s 219 (304)
+. .+..+..+...+..++++++|++.++...++.| ..||..+++.+..+.... ..+++++|. |+++.|..
T Consensus 183 G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v--~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 183 GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV--IRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE--EEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEE
T ss_pred CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE--EEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEE
Confidence 32 122333344568899999999888777666664 589988777776665432 246889998 88876655
Q ss_pred Ee
Q psy4754 220 GY 221 (304)
Q Consensus 220 g~ 221 (304)
.+
T Consensus 259 t~ 260 (297)
T 3g4e_A 259 TC 260 (297)
T ss_dssp EE
T ss_pred Ec
Confidence 44
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-09 Score=97.59 Aligned_cols=218 Identities=9% Similarity=0.043 Sum_probs=139.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeee----cCCcCcEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHL----MGHENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~----~~h~~~V~~l~ 75 (304)
++++|+.||+.+++........ .... ++|++++..|+.+..++ .|.+|+...+.....+ ..+...+.+++
T Consensus 150 ~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~ia 225 (409)
T 3hrp_A 150 DDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVA 225 (409)
T ss_dssp TTTEEEEEETTTTEEEEEEETC---CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCE
T ss_pred CCCcEEEEECCCCEEEEeeccC---CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEE
Confidence 4578999999988765443321 1234 99999999888887766 7888887765433333 22446678899
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe---ccceeece-e-eeEEcCCCCEEE-EEeCCCeEEEecCCccccc
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK---KDSILFGA-T-SVDFSVSGRLLF-AGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~---~~~~~~~~-~-~~~~s~~~~~l~-sg~~dg~i~iwd~~~~~~~ 149 (304)
++|++..|+.+..++. ++.||....... .+. ........ . .++|+|++..++ +-...+.|+.|+.... +
T Consensus 226 v~p~~g~lyv~d~~~~--I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~ 300 (409)
T 3hrp_A 226 LDETEEWLYFVDSNKN--FGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--C 300 (409)
T ss_dssp ECTTSSEEEEECTTCE--EEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E
T ss_pred EeCCCCeEEEEECCCc--EEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--E
Confidence 9995444444555565 477888755432 220 11111011 2 789999644444 4556789999986532 2
Q ss_pred eeccCc---------------ccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecC-------------c
Q psy4754 150 NHLMGH---------------ENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKD-------------S 200 (304)
Q Consensus 150 ~~~~~h---------------~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~-------------~ 200 (304)
..+.++ -.....++++|+|+++++-+ .++.| +.|++.+++.. .+... .
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I--~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~ 377 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL--RKLDILDGYVS-TVAGQVDVASQIDGTPLEA 377 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE--EEEETTTTEEE-EEEECTTCBSCCCBSTTTC
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE--EEEECCCCEEE-EEeCCCCCCCcCCCChhce
Confidence 222222 23578999999999777766 66664 68886665532 22211 0
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
....+..++++|+|.++++-...+.|+.+++
T Consensus 378 ~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 378 TFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1234688999999999888888888887653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=112.55 Aligned_cols=206 Identities=15% Similarity=0.012 Sum_probs=115.5
Q ss_pred CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeec
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 116 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~ 116 (304)
++..+++++.||.|+.||..+|+.+-.+.. +++.+..+..+++.+++++.|+.+ ..||..+++.+..++.+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l--~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSL--YTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCE--EEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEE--EEEECCCCceeeeeeccCcccc
Confidence 577889999999999999999988766655 455555666778888888899985 6799987776655433211000
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 196 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~ 196 (304)
..+..+. ++..+++++.++.+..||..+++.+-++..+. ...++|++..+++++.|+.+ ..||.++++.+-.+
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v--~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTI--TMYDTKTRELRWNA 156 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEE--ECCCSSSSSCCCEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEE--EEEECCCCCEEEeE
Confidence 0111111 34567888889999999999887765554443 23456788889999988885 68999888754332
Q ss_pred ecCceeeeeeEEEEcCCC---CEEEEEeCCCcEEEEeCCCceeeEEeeccccceE-EEEEccCCCE
Q psy4754 197 KKDSILFGATSVDFSVSG---RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS-CLQVSPDGTA 258 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~g---~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~-~l~~sp~g~~ 258 (304)
.... ....++.++. ..+++++.|+.+..||..+++.+-++.. ..++. ...++++|..
T Consensus 157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCE
T ss_pred eccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceE
Confidence 2111 1222334432 4566788899999999999988776653 34544 3456667754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-09 Score=90.29 Aligned_cols=225 Identities=8% Similarity=-0.084 Sum_probs=144.3
Q ss_pred CceeEEeeccccceEeeeecc--cc---ccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeee-ecCCcCcEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKD--SI---LFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNH-LMGHENRVSCL 74 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~--~~---~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~-~~~h~~~V~~l 74 (304)
+++|.+||+.+.++....+.. .+ ...-..++|+|||++|+.+.. +..|.++| .+++.+.. +... . ++
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~ 170 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CY 170 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eE
Confidence 567999999998776554432 00 112457999999999988764 57899999 99887776 5422 1 24
Q ss_pred EECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEeccc---eeec-eeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-
Q psy4754 75 QVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFG-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR- 148 (304)
Q Consensus 75 ~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~---~~~~-~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~- 148 (304)
.+.|++ +.+++.+.|+.+ ..+|. +.+......... .... .....+.+++..++..+..+.+.+.|+.....
T Consensus 171 ~~~~~~~~~~~~~~~dg~~--~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGL--AKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred EEEeCCCceEEEEcCCCCE--EEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence 455655 355666678874 57887 655542221000 0000 01234556655555555778999999754321
Q ss_pred -ceeccC----------cccceeEEEEcCCCcEEEEeec----------CCceEEEEeeecCCceEEEeecCceeeeeeE
Q psy4754 149 -VNHLMG----------HENRVSCLQVSPDGTAFSSGSW----------DTTLRCRLFDLRADKEVACYKKDSILFGATS 207 (304)
Q Consensus 149 -~~~~~~----------h~~~v~~v~~sp~~~~las~s~----------d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~ 207 (304)
+..+.- .......+.++|+++.+..... ++. +.++|..+.+.+..+.... ....
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~--V~VID~~t~~vv~~i~~g~---~p~~ 322 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE--VTSVTGLVGQTSSQISLGH---DVDA 322 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe--EEEEECCCCEEEEEEECCC---CcCe
Confidence 111110 1223444789999887766543 234 5789999988877775443 3588
Q ss_pred EEEcCCCC-EEEEEe-CCCcEEEEeCCCceeeEEe
Q psy4754 208 VDFSVSGR-LLFAGY-NDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 208 ~~~s~~g~-~l~sg~-~d~~i~iwd~~~~~~~~~~ 240 (304)
++|+|||+ +++++. .+++|.+||..+++.+.++
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99999999 677766 5899999999998888774
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-08 Score=88.35 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=139.3
Q ss_pred CCCCEE-EEeeCCCcEEEEeCCCc----eeeeeec------C-CcCcEEEEEECCCCCeEEEEeCC------CceEEEEe
Q psy4754 36 VSGRLL-FAGYNDYTINVWDSLKC----CRVNHLM------G-HENRVSCLQVSPDGTAFSSGSWD------TTLRCRLF 97 (304)
Q Consensus 36 ~~g~~l-~tg~~dg~v~iwd~~~~----~~~~~~~------~-h~~~V~~l~~s~d~~~l~sgs~D------~~i~~~~w 97 (304)
+++++| ++|..++.|.++|+.+. +..++++ . -...-..+.+.|+| .++++..+ +. +.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~--v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGG--ILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCE--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCe--EEEE
Confidence 777754 67888999999998654 4444442 0 01133467889999 77776555 45 4688
Q ss_pred eeCCCeeEeEEeccceeec-eeeeEEcCCCCEEEEEe-------------------CCCeEEEecCCccccceeccC--c
Q psy4754 98 DLRADKEVACYKKDSILFG-ATSVDFSVSGRLLFAGY-------------------NDYTINVWDSLKCCRVNHLMG--H 155 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~sg~-------------------~dg~i~iwd~~~~~~~~~~~~--h 155 (304)
|..+.+.+..++....... .-.+-|+|+++.+++.. .+..|.+||+.+++.+.++.- .
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 9888888777754321111 11356799999888874 479999999988766655432 1
Q ss_pred ccceeEEEE--cCCCcEEEEeec------CCceEEEEeeecCCc--eEEEe--ecCc--------------eeeeeeEEE
Q psy4754 156 ENRVSCLQV--SPDGTAFSSGSW------DTTLRCRLFDLRADK--EVACY--KKDS--------------ILFGATSVD 209 (304)
Q Consensus 156 ~~~v~~v~~--sp~~~~las~s~------d~~i~i~~~d~~~~~--~~~~~--~~~~--------------~~~~~~~~~ 209 (304)
......+.| +|+++++..++. +++|. +|....++ ....+ .... ....+..+.
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~--v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW--LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE--EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEE--EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 123445655 999988776664 44653 33332221 11111 1100 012357889
Q ss_pred EcCCCCEEEEEe-CCCcEEEEeCC---CceeeEEeecc-----------c---cceEEEEEccCCCEEEEee
Q psy4754 210 FSVSGRLLFAGY-NDYTINVWDSL---KCCRVNHLMGH-----------E---NRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 210 ~s~~g~~l~sg~-~d~~i~iwd~~---~~~~~~~~~~h-----------~---~~i~~l~~sp~g~~lasgs 263 (304)
+||||++|.++. ..+.|.+||+. +.+.+..+.-. . +.-..++++|||++|..+.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999877765 45789999975 23444444221 0 1357899999999888775
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-08 Score=84.71 Aligned_cols=203 Identities=12% Similarity=0.055 Sum_probs=127.2
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec---C-CcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---G-HENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~---~-h~~~V~~l~~s~ 78 (304)
++.|..||..+++.. .+.. ...+.+++|+++|.++++. .+ .|.+||..+++...... . ....+..+++.|
T Consensus 70 ~~~i~~~d~~~~~~~-~~~~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~ 143 (326)
T 2ghs_A 70 ERELHELHLASGRKT-VHAL---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP 143 (326)
T ss_dssp GTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT
T ss_pred CCEEEEEECCCCcEE-EEEC---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC
Confidence 467888998887543 2222 2348899999999887765 44 49999988776432211 1 124688999999
Q ss_pred CCCeEEEEeCC----CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCC--cc-cc--
Q psy4754 79 DGTAFSSGSWD----TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSL--KC-CR-- 148 (304)
Q Consensus 79 d~~~l~sgs~D----~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~--~~-~~-- 148 (304)
+|+++++...+ ....++.++ .++. ..+... ......++|+++++.++.+ ..++.|.+||.. ++ ..
T Consensus 144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 144 SGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp TSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred CCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 99977765422 233334455 3332 222111 1124578899999877655 457899999975 33 21
Q ss_pred ---ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc-CCCCEEEEEe
Q psy4754 149 ---VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFAGY 221 (304)
Q Consensus 149 ---~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~sg~ 221 (304)
+..+......+..++++++|+++++...++.| ..||. +++.+..+.... ..+.+++|+ |++..|..++
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v--~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV--DRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE--EEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEE
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE--EEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEe
Confidence 12222334567889999999877776555664 57887 455555544332 246889998 8887665544
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-09 Score=93.37 Aligned_cols=226 Identities=12% Similarity=-0.006 Sum_probs=143.5
Q ss_pred CceeEEeeccccceEeeeecc--cc---ccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKD--SI---LFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~--~~---~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
++.|.++|+.+++....++.. .+ ...-..++|+|||++++.+.. ++.|-+.|+.+++.+..+..-.. ..
T Consensus 148 ~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~ 223 (426)
T 3c75_H 148 TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YH 223 (426)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EE
T ss_pred CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----ee
Confidence 467999999999887665532 00 112456899999998887764 68999999999988877653111 12
Q ss_pred ECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeE----EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc--
Q psy4754 76 VSPDG-TAFSSGSWDTTLRCRLFDLRADKEVAC----YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-- 148 (304)
Q Consensus 76 ~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-- 148 (304)
..|++ ..+++.+.|+.+ .+.+....+.... +...... ....+.|.+++..++.....+.|.+.|......
T Consensus 224 ~~p~g~~~~v~~~~dG~~--~~V~~~~~~v~~~~~~~~~v~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSL--ARVDFADGETKVTNTEVFHTEDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEEEETTEEEEEETTSSE--EEEECCTTCCEEEECCCCSCTTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred eccCCCcEEEEEcCCCCE--EEEECCCCcEEEEeeeeeccCCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 23332 344455555553 2334432222211 1110000 012345788888877777889999999754321
Q ss_pred ceecc----------CcccceeEEEEcCCCcEEEEeec----------CCceEEEEeeecCCceEEEeecCceeeeeeEE
Q psy4754 149 VNHLM----------GHENRVSCLQVSPDGTAFSSGSW----------DTTLRCRLFDLRADKEVACYKKDSILFGATSV 208 (304)
Q Consensus 149 ~~~~~----------~h~~~v~~v~~sp~~~~las~s~----------d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
+..+. ........++++|+++.+..... ++. +.++|..+.+.+..+.... ....+
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~--VsVID~~T~kvv~~I~vg~---~P~gi 375 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF--VVVLNAETGERINKIELGH---EIDSI 375 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE--EEEEETTTCCEEEEEEEEE---EECEE
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE--EEEEECCCCeEEEEEECCC---CcCeE
Confidence 11100 01122233789999876655432 234 5789999999888776443 46899
Q ss_pred EEcCCCC-EEEEEe-CCCcEEEEeCCCceeeEEe
Q psy4754 209 DFSVSGR-LLFAGY-NDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 209 ~~s~~g~-~l~sg~-~d~~i~iwd~~~~~~~~~~ 240 (304)
+|+|||+ ++++.. .+++|.++|..+.+.++++
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999 877776 5899999999999998887
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-09 Score=98.61 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=136.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCc-------------EEEEeCCCce----eeeeecC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-------------INVWDSLKCC----RVNHLMG 66 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~-------------v~iwd~~~~~----~~~~~~~ 66 (304)
.+|++||+.+++.+.. .........++|+ ||+.|+-++.+.. |++|++.+.. .+.....
T Consensus 155 ~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~ 230 (693)
T 3iuj_A 155 REIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP 230 (693)
T ss_dssp EEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG
T ss_pred EEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC
Confidence 5799999999986542 1111113678999 9998887777744 9999987653 2333333
Q ss_pred -CcCcEEEEEECCCCCeEEE-EeCCCc-eEEEEeeeCCCe-eEeEEeccceeeceeeeEEcCCCCEEEEEeC----CCeE
Q psy4754 67 -HENRVSCLQVSPDGTAFSS-GSWDTT-LRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYN----DYTI 138 (304)
Q Consensus 67 -h~~~V~~l~~s~d~~~l~s-gs~D~~-i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~----dg~i 138 (304)
|...+..+.|+|||++|+- .+.+.. -.++++|+.... ....+..... ..... +++++..++..++ .+.|
T Consensus 231 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~--~~~~~-~~~~g~~l~~~t~~~~~~~~l 307 (693)
T 3iuj_A 231 AQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD--ADVSL-VDNKGSTLYLLTNRDAPNRRL 307 (693)
T ss_dssp GGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred CCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC--ceEEE-EeccCCEEEEEECCCCCCCEE
Confidence 5556788999999997753 333322 246889986652 2233322211 11122 5666666655443 3689
Q ss_pred EEecCCcccc--ceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC
Q psy4754 139 NVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 215 (304)
Q Consensus 139 ~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 215 (304)
..+|+.+... ...+..|...+. .|+|+++.++... .++.-.+++||+.... ...+.... ...+..+.++|++.
T Consensus 308 ~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 308 VTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDP 383 (693)
T ss_dssp EEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSS-SSEEEECCCCTTCS
T ss_pred EEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCC-CceEEeeecCCCCC
Confidence 9999876543 345566666665 8888888776554 4554456788887543 23322111 11245566778887
Q ss_pred EEEEEeCC----CcEEEEeCCCce
Q psy4754 216 LLFAGYND----YTINVWDSLKCC 235 (304)
Q Consensus 216 ~l~sg~~d----~~i~iwd~~~~~ 235 (304)
.++....+ +++..||+.+++
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEecCCCCCCEEEEEECCCCe
Confidence 76665444 789999987654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-08 Score=96.78 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=168.7
Q ss_pred CceeEEeeccccceEeeeecccccc-------c-e-eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC--CcCcE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF-------G-A-TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRV 71 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~-------~-i-~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~--h~~~V 71 (304)
+++|.-+|..+++++=.+....... . + ..++. .+..++.++.|+.+..+|..+|+.+=.+.. +....
T Consensus 79 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~ 156 (689)
T 1yiq_A 79 FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRS 156 (689)
T ss_dssp GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSC
T ss_pred CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCC
Confidence 4678889999998864443221100 0 0 11222 356777888999999999999987644332 11111
Q ss_pred EEEEECC---CCCeEEEEe-----CCCceEEEEeeeCCCeeEeEEeccce--e------------------------e--
Q psy4754 72 SCLQVSP---DGTAFSSGS-----WDTTLRCRLFDLRADKEVACYKKDSI--L------------------------F-- 115 (304)
Q Consensus 72 ~~l~~s~---d~~~l~sgs-----~D~~i~~~~wd~~~~~~~~~~~~~~~--~------------------------~-- 115 (304)
..+..+| ++..++..+ .|+. +..+|..+++.+..+..... . .
T Consensus 157 ~~~~~sP~v~~g~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~ 234 (689)
T 1yiq_A 157 YTITGAPRVVNGKVVIGNGGAEFGVRGY--VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGG 234 (689)
T ss_dssp CBCCSCCEEETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEEC
T ss_pred ccccCCcEEECCEEEEEeCCCccCCCCE--EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCC
Confidence 1111112 444444322 2566 46899999988877652100 0 0
Q ss_pred -ceeeeEEcCCCCEEEEEeCCCe-------------------EEEecCCccccceeccC--cc-------cceeEEEEcC
Q psy4754 116 -GATSVDFSVSGRLLFAGYNDYT-------------------INVWDSLKCCRVNHLMG--HE-------NRVSCLQVSP 166 (304)
Q Consensus 116 -~~~~~~~s~~~~~l~sg~~dg~-------------------i~iwd~~~~~~~~~~~~--h~-------~~v~~v~~sp 166 (304)
.-..+.++++...++.+..++. |..+|..+++.+=++.. |. .++.......
T Consensus 235 ~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 235 TAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI 314 (689)
T ss_dssp CCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc
Confidence 0124678888889999887764 99999998876544332 21 1222222233
Q ss_pred CCc---EEEEeecCCceEEEEeeecCCceEEEeecCcee-------------------------------------eeee
Q psy4754 167 DGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-------------------------------------FGAT 206 (304)
Q Consensus 167 ~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~-------------------------------------~~~~ 206 (304)
+|+ .++.++.++.+ +.+|.++++.+...+..... ..-.
T Consensus 315 ~G~~~~~v~~~~~~G~l--~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 392 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFF--YVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ 392 (689)
T ss_dssp TTEEEEEEEECCTTSEE--EEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred CCcEEEEEEEECCCCeE--EEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence 564 68888889985 58998888876322211000 0001
Q ss_pred EEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEeCCCceeeEEee
Q psy4754 207 SVDFSVSGRLLFAGYN---------------------------------------------DYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~---------------------------------------------d~~i~iwd~~~~~~~~~~~ 241 (304)
.++|+|+..++.+... ++.++.||+.+++.+-++.
T Consensus 393 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 472 (689)
T 1yiq_A 393 PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP 472 (689)
T ss_dssp CCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE
T ss_pred cceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc
Confidence 3678888887776532 3779999999999887776
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
.+. ++..-.++..+..+..|+.|+.++.||.+.+.....++
T Consensus 473 ~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 473 YVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp ESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 543 34444667778889999999999999987766444443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.8e-09 Score=98.73 Aligned_cols=255 Identities=12% Similarity=0.036 Sum_probs=160.0
Q ss_pred CCceeEEeeccccceEeeeecc-cc--ccceeEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeeeeecCCc----
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD-SI--LFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHE---- 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~-~~--~~~i~~~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~~~~~h~---- 68 (304)
.|+++..+|..+++++-.+... .. ...+.+.-...++ .++.++. +|.|+.||..+|+.+-.+....
T Consensus 136 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~ 214 (677)
T 1kb0_A 136 WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPS 214 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcc
Confidence 4678999999999987555432 10 0112211111134 4444443 7999999999987664433211
Q ss_pred ----------------------------CcEEEEEECCCCCeEEEEeCCCce-----------------EEEEeeeCCCe
Q psy4754 69 ----------------------------NRVSCLQVSPDGTAFSSGSWDTTL-----------------RCRLFDLRADK 103 (304)
Q Consensus 69 ----------------------------~~V~~l~~s~d~~~l~sgs~D~~i-----------------~~~~wd~~~~~ 103 (304)
.....+++.+++..++.+..++.. .+..+|..+++
T Consensus 215 ~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~ 294 (677)
T 1kb0_A 215 KPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK 294 (677)
T ss_dssp SCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred ccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC
Confidence 011256788888888877655421 24678988888
Q ss_pred eEeEEeccce-------eeceeeeEEcCCC---CEEEEEeCCCeEEEecCCccccceeccCcc----------c-ce---
Q psy4754 104 EVACYKKDSI-------LFGATSVDFSVSG---RLLFAGYNDYTINVWDSLKCCRVNHLMGHE----------N-RV--- 159 (304)
Q Consensus 104 ~~~~~~~~~~-------~~~~~~~~~s~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~----------~-~v--- 159 (304)
.+..++.... ......+....+| ..++.++.+|.+.++|..+++.+-.+.-.. . ++
T Consensus 295 ~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~ 374 (677)
T 1kb0_A 295 YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIA 374 (677)
T ss_dssp EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECG
T ss_pred EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeecc
Confidence 8887764211 0111222333466 678889999999999998887654322100 0 00
Q ss_pred ---------------------eEEEEcCCCcEEEEeecC-----------------------------------------
Q psy4754 160 ---------------------SCLQVSPDGTAFSSGSWD----------------------------------------- 177 (304)
Q Consensus 160 ---------------------~~v~~sp~~~~las~s~d----------------------------------------- 177 (304)
..++|+|+..++++...+
T Consensus 375 ~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 454 (677)
T 1kb0_A 375 AARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSK 454 (677)
T ss_dssp GGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSC
T ss_pred ccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCC
Confidence 156889988887765432
Q ss_pred --CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-ccceEEEEEcc
Q psy4754 178 --TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSP 254 (304)
Q Consensus 178 --~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp 254 (304)
+. +..||+.+++.+-.++... +.....+...+..++.++.|+.+++||..+++.+.++... ...-..+.|++
T Consensus 455 ~~g~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 455 PFGR--LLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp CEEE--EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CccE--EEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEe
Confidence 33 4678888887654443322 2234456678888999999999999999999999888643 33345567788
Q ss_pred CCCEEEEe
Q psy4754 255 DGTAFSSG 262 (304)
Q Consensus 255 ~g~~lasg 262 (304)
+|+.++..
T Consensus 530 ~G~~~v~~ 537 (677)
T 1kb0_A 530 DGRQYVSV 537 (677)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99766543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-09 Score=91.60 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=125.5
Q ss_pred CcEEEEEECCCCCeEEEEe-C-CCceEEEEeeeCCCeeEeEEec-----cceeeceeeeEEcCCCCEEEEEeC-----CC
Q psy4754 69 NRVSCLQVSPDGTAFSSGS-W-DTTLRCRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFAGYN-----DY 136 (304)
Q Consensus 69 ~~V~~l~~s~d~~~l~sgs-~-D~~i~~~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~sg~~-----dg 136 (304)
.....++++++|+.+++.. + ++.+ ++|.+..++ +..+.. ......+..++++++++++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~--~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEM--QVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSC--SEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCce--EEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 6788999999999998863 2 3322 455554333 222211 112335678999999875554433 57
Q ss_pred eEEEecCCccccceecc------CcccceeEEEEcCC-CcEEEEee---cCCceEEEEeeecCCceEEEeecC-------
Q psy4754 137 TINVWDSLKCCRVNHLM------GHENRVSCLQVSPD-GTAFSSGS---WDTTLRCRLFDLRADKEVACYKKD------- 199 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~------~h~~~v~~v~~sp~-~~~las~s---~d~~i~i~~~d~~~~~~~~~~~~~------- 199 (304)
.|.+||+.+++.+..+. .+...+..++++|+ +..+++.+ .++.+ .+||+.+++.......+
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i--~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL--IRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE--EEEETTTCCEEEECTTCTTTSCCS
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE--EEEECCCCCEEEEecCCCcccccc
Confidence 89999988776544332 12345689999986 45555544 45554 68998766554433210
Q ss_pred ------c--------------eeeeeeEEEEcCCCCEEEEEeCCC-cEEEEeCC---Cc-----eeeE--EeeccccceE
Q psy4754 200 ------S--------------ILFGATSVDFSVSGRLLFAGYNDY-TINVWDSL---KC-----CRVN--HLMGHENRVS 248 (304)
Q Consensus 200 ------~--------------~~~~~~~~~~s~~g~~l~sg~~d~-~i~iwd~~---~~-----~~~~--~~~~h~~~i~ 248 (304)
. ....++.++++|+|+.|..+...+ .+..++.. .+ +... ...++.....
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 0 002357899999999888876655 44444421 00 0000 1223444567
Q ss_pred EEEEccCCCEEEEeecCCeeeeccc
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.++++++|..+++...++.|..|+.
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEET
T ss_pred eEEECCCCCEEEEccCCCeEEEEEC
Confidence 7999999999999999999999997
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-07 Score=74.81 Aligned_cols=241 Identities=7% Similarity=-0.012 Sum_probs=142.1
Q ss_pred ceeEEeeccccceE-----eeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEEC
Q psy4754 4 NHCRLFDLRADKEV-----ACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~~~~~~~-----~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 77 (304)
+.|+.+|++++... +.+. ........++|++++. ++++-...+.|..++.........+.........+++.
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d 87 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD 87 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEE
Confidence 36788888776421 1111 1122367899998654 55566678899999987554322222222467889999
Q ss_pred CCCCeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---CCeEEEecCCccccceec-
Q psy4754 78 PDGTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHL- 152 (304)
Q Consensus 78 ~d~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~- 152 (304)
+++..|+ +....+.| ..++............. ......++++|++..++.+.. .+.|..+++.... ...+
T Consensus 88 ~~~~~lyv~d~~~~~I--~~~~~~g~~~~~~~~~~--~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~ 162 (267)
T 1npe_A 88 HLGRTIFWTDSQLDRI--EVAKMDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA 162 (267)
T ss_dssp TTTTEEEEEETTTTEE--EEEETTSCSCEEEECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE
T ss_pred ecCCeEEEEECCCCEE--EEEEcCCCCEEEEEECC--CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE
Confidence 8765544 44445553 56776543222112111 123467889997777766654 3688887754322 2222
Q ss_pred cCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 153 MGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 153 ~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
.........++++|++..+..+. ..+. |..+|.............. .+..++.. ++.++++....+.|..+|.
T Consensus 163 ~~~~~~P~gia~d~~~~~lyv~d~~~~~--I~~~~~~g~~~~~~~~~~~---~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHR--AECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCCcEEEEcCCCCEEEEEECCCCE--EEEEecCCCceEEEecCCC---CceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 12234578999999876555444 4455 4578876543332222211 23455554 4555555556689999999
Q ss_pred CCceeeEEeeccc-cceEEEEEccCCC
Q psy4754 232 LKCCRVNHLMGHE-NRVSCLQVSPDGT 257 (304)
Q Consensus 232 ~~~~~~~~~~~h~-~~i~~l~~sp~g~ 257 (304)
.+++.+.++.... .....+++.|++.
T Consensus 237 ~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 237 AISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCceEEEccccccccceeeecCccC
Confidence 9888888775433 2467888988864
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-08 Score=82.74 Aligned_cols=203 Identities=13% Similarity=0.036 Sum_probs=126.6
Q ss_pred eeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
..+..+..+..+.....|+++++ +++++..++.+ ..|+.. +. ...+.... ..+..+.++++++++++...++.
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i--~~~~~~-g~-~~~~~~~~--~~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRV--LGWRED-GT-VDVLLDAT--AFTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEE--EEEETT-SC-EEEEEESC--SCEEEEEECTTSCEEEEETTTTE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEE--EEEeCC-CC-EEEEeCCC--CccceeeECCCCCEEEEECCCCE
Confidence 34444555566788999999998 56676666664 678774 33 23332221 13567889999986666556689
Q ss_pred EEEecCCccccceecc----Cc-ccceeEEEEcCCCcEEEE----eecC-----------CceEEEEeeecCCceEEEee
Q psy4754 138 INVWDSLKCCRVNHLM----GH-ENRVSCLQVSPDGTAFSS----GSWD-----------TTLRCRLFDLRADKEVACYK 197 (304)
Q Consensus 138 i~iwd~~~~~~~~~~~----~h-~~~v~~v~~sp~~~~las----~s~d-----------~~i~i~~~d~~~~~~~~~~~ 197 (304)
|.+||.. ++ +..+. +. ...+..++++|+|+++++ |..+ ..-.+..+|..+++.....
T Consensus 109 v~~~~~~-g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 109 ITRSDAD-GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEECTT-SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEECCC-CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 9999864 32 22221 11 134678999999998886 3321 1223456776555443222
Q ss_pred cCceeeeeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCceeeE---Ee-eccccceEEEEEccCCCEEEEeecCCe
Q psy4754 198 KDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCCRVN---HL-MGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g~~l~sg~~d------~~i~iwd~~~~~~~~---~~-~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.....+.++|+|+++.|..+... +.|.+|++.... +. .+ ....+....++++++|++.++. .+ .
T Consensus 186 ---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-g 259 (305)
T 3dr2_A 186 ---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-G 259 (305)
T ss_dssp ---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-E
T ss_pred ---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-c
Confidence 11245789999999977776655 689999876543 21 11 1123445678999999966554 44 4
Q ss_pred eeecccccc
Q psy4754 268 LRDEESKNR 276 (304)
Q Consensus 268 i~~~~~~~~ 276 (304)
|..|+.+..
T Consensus 260 v~~~~~~g~ 268 (305)
T 3dr2_A 260 VCVFDSDGQ 268 (305)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCCC
Confidence 888886443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-08 Score=96.06 Aligned_cols=255 Identities=10% Similarity=0.052 Sum_probs=157.2
Q ss_pred CCceeEEeeccccceEeeeecc-cc--ccceeEEEEcCCCCEEEEee-----CCCcEEEEeCCCceeeeeecC--C----
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD-SI--LFGATSVDFSVSGRLLFAGY-----NDYTINVWDSLKCCRVNHLMG--H---- 67 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~-~~--~~~i~~~~~~~~g~~l~tg~-----~dg~v~iwd~~~~~~~~~~~~--h---- 67 (304)
.|+++..+|..+++++-.+... .. ...+.+.-.-.++.+++..+ .+|.|..||..+|+.+=.+.. +
T Consensus 129 ~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~ 208 (689)
T 1yiq_A 129 LDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKL 208 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred cCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccc
Confidence 4788999999999987544432 10 01121110111455544332 378999999999876533321 0
Q ss_pred -------------------------cCcEEEEEECCCCCeEEEEeCCCce-----------------EEEEeeeCCCeeE
Q psy4754 68 -------------------------ENRVSCLQVSPDGTAFSSGSWDTTL-----------------RCRLFDLRADKEV 105 (304)
Q Consensus 68 -------------------------~~~V~~l~~s~d~~~l~sgs~D~~i-----------------~~~~wd~~~~~~~ 105 (304)
......+++.|+.+.++.++.++.. .+..+|..+++.+
T Consensus 209 ~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~ 288 (689)
T 1yiq_A 209 PPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV 288 (689)
T ss_dssp CCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE
T ss_pred ccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee
Confidence 0011256788888888888776530 2467999999988
Q ss_pred eEEecccee---e----ceeeeEEcCCCC---EEEEEeCCCeEEEecCCccccceecc-Cc-------------------
Q psy4754 106 ACYKKDSIL---F----GATSVDFSVSGR---LLFAGYNDYTINVWDSLKCCRVNHLM-GH------------------- 155 (304)
Q Consensus 106 ~~~~~~~~~---~----~~~~~~~s~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-~h------------------- 155 (304)
..++..... + ......+..+++ .++.++.+|.++++|..+++.+.... ..
T Consensus 289 W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~ 368 (689)
T 1yiq_A 289 WHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEE 368 (689)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHH
T ss_pred EeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchh
Confidence 877642110 0 011112223454 68888999999999998887652110 00
Q ss_pred --------cc-----------ceeEEEEcCCCcEEEEeecC---------------------------------------
Q psy4754 156 --------EN-----------RVSCLQVSPDGTAFSSGSWD--------------------------------------- 177 (304)
Q Consensus 156 --------~~-----------~v~~v~~sp~~~~las~s~d--------------------------------------- 177 (304)
.. .-..++|+|+..++++.+.+
T Consensus 369 ~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~ 448 (689)
T 1yiq_A 369 NAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLE 448 (689)
T ss_dssp HHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHH
T ss_pred hccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCC
Confidence 00 01137889988777765322
Q ss_pred ------CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEE
Q psy4754 178 ------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCL 250 (304)
Q Consensus 178 ------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l 250 (304)
+. +..||+.+++.+-.++... +...-.+...+.+++.|+.|+.++.||..+++++.++....+ .-..+
T Consensus 449 ~~~~~~g~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ 523 (689)
T 1yiq_A 449 MAKSWSGK--LIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPV 523 (689)
T ss_dssp HHTTCEEE--EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCCccee--EEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCce
Confidence 33 4678988887654443332 122234566788999999999999999999999988875432 23457
Q ss_pred EEccCCCEEEE
Q psy4754 251 QVSPDGTAFSS 261 (304)
Q Consensus 251 ~~sp~g~~las 261 (304)
.|+.+|+.++.
T Consensus 524 ty~~~G~qyv~ 534 (689)
T 1yiq_A 524 TYSVDGEQYVT 534 (689)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 78889986554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-08 Score=91.15 Aligned_cols=236 Identities=14% Similarity=0.046 Sum_probs=152.5
Q ss_pred CCCEEE-EeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEE-C-CCCCeEEEEeC------------------CCceEE
Q psy4754 37 SGRLLF-AGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQV-S-PDGTAFSSGSW------------------DTTLRC 94 (304)
Q Consensus 37 ~g~~l~-tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~-s-~d~~~l~sgs~------------------D~~i~~ 94 (304)
||+++. +...+..|.+-|+.+.+..+.+.-- ......+++ + |++++++.++. ++. +
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~--v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV--F 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE--E
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce--E
Confidence 777665 5555678999999998877633221 234668887 5 89999888852 223 4
Q ss_pred EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC--------------------------------------
Q psy4754 95 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-------------------------------------- 136 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg-------------------------------------- 136 (304)
.++|..+.+....+.-... ...++++|+++++++.+.+.
T Consensus 178 tvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 6788887766665543221 23577899999998887543
Q ss_pred eEEEecCCc--ccc-ceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCc------------eEEEeecCc
Q psy4754 137 TINVWDSLK--CCR-VNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADK------------EVACYKKDS 200 (304)
Q Consensus 137 ~i~iwd~~~--~~~-~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~------------~~~~~~~~~ 200 (304)
.|.+.|..+ +.. +..+. -.....++.++|||++++.++ .+.++ .++|+.+.+ ........
T Consensus 255 ~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~V--sVid~~~~~~~~~~~l~~~~~v~~~v~vG- 330 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTV--TVLDVTRFDAVFYENADPRSAVVAEPELG- 330 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBE--EEEEGGGHHHHHHSCCCGGGGEEECCBCC-
T ss_pred cEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeE--EEEECcccccccccccCcccceEEEcCCC-
Confidence 366666665 222 22221 123466799999999877655 45554 689988643 22222222
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------ceeeEEeeccccce-----EEEEEccCCCEEEEe---
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----------CCRVNHLMGHENRV-----SCLQVSPDGTAFSSG--- 262 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~----------~~~~~~~~~h~~~i-----~~l~~sp~g~~lasg--- 262 (304)
.....++|+|+|..+++..-|++|.+||+.+ .+.+.++.-|..+- ..+.++|||++|.+.
T Consensus 331 --~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 331 --LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp --SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred --CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 3467899999996666778899999999876 45667776666542 223568999999986
Q ss_pred ecCCee----------eeccccccchhheee
Q psy4754 263 SWDTTL----------RDEESKNRYMQYLLR 283 (304)
Q Consensus 263 s~D~~i----------~~~~~~~~~~~~~~~ 283 (304)
|.|+.+ ++.+...+.|..+..
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~m~lv~d 439 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDKMVLVHD 439 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred CccccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence 346653 566654444444443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.9e-08 Score=84.75 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=135.0
Q ss_pred CCceeEEeecccc----ceEeeee-ccc---ccc-ceeEEEEcCCCCEEEEeeCC------CcEEEEeCCCceeeeeecC
Q psy4754 2 GKNHCRLFDLRAD----KEVACYK-KDS---ILF-GATSVDFSVSGRLLFAGYND------YTINVWDSLKCCRVNHLMG 66 (304)
Q Consensus 2 ~~~~v~~wd~~~~----~~~~~~~-~~~---~~~-~i~~~~~~~~g~~l~tg~~d------g~v~iwd~~~~~~~~~~~~ 66 (304)
++++|.++|+.++ +....+. .+. .+. .-..+...|+| +++++..+ |.+.+.|..+++.+.+...
T Consensus 104 ~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~ 182 (462)
T 2ece_A 104 RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI 182 (462)
T ss_dssp TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS
T ss_pred CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc
Confidence 5688999999876 3333331 001 011 13456788999 77776665 8999999999998887753
Q ss_pred CcCc---EEEEEECCCCCeEEEEeC-------------------CCceEEEEeeeCCCeeEeEEeccceeeceeeeEE--
Q psy4754 67 HENR---VSCLQVSPDGTAFSSGSW-------------------DTTLRCRLFDLRADKEVACYKKDSILFGATSVDF-- 122 (304)
Q Consensus 67 h~~~---V~~l~~s~d~~~l~sgs~-------------------D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~-- 122 (304)
-.++ -..+-|+|+++.+++..| +.+ +.+||+.+.+.+..+...........+.|
T Consensus 183 ~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~--V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~ 260 (462)
T 2ece_A 183 DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR--IHFWDLRKRKRIHSLTLGEENRMALELRPLH 260 (462)
T ss_dssp BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE--EEEEETTTTEEEEEEESCTTEEEEEEEEECS
T ss_pred CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE--EEEEECCCCcEeeEEecCCCCCccceeEeeE
Confidence 2221 235778999999999864 455 57899988777666654211112234444
Q ss_pred cCCCCEEEEEeC------CCeEEEecCCccc--cce-----------ec-------cCcccceeEEEEcCCCcEEEEeec
Q psy4754 123 SVSGRLLFAGYN------DYTINVWDSLKCC--RVN-----------HL-------MGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 123 s~~~~~l~sg~~------dg~i~iwd~~~~~--~~~-----------~~-------~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
+|++++++.++. ++.|.+|....+. ... .+ .+-...+..+.+|||+++|..+.+
T Consensus 261 ~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr 340 (462)
T 2ece_A 261 DPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW 340 (462)
T ss_dssp STTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred CCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence 999999888764 5677654322110 000 00 000235778999999999888776
Q ss_pred CCceEEEEeeecC---CceEEEeecCce------------eeeeeEEEEcCCCCEEEEEe
Q psy4754 177 DTTLRCRLFDLRA---DKEVACYKKDSI------------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 177 d~~i~i~~~d~~~---~~~~~~~~~~~~------------~~~~~~~~~s~~g~~l~sg~ 221 (304)
..- .|.+||+.. .+.+........ ......++++|||++|.++.
T Consensus 341 g~d-~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 341 GIG-EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTT-EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCC-EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 443 257888753 234444433211 01246789999999998887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.8e-08 Score=91.85 Aligned_cols=269 Identities=12% Similarity=0.031 Sum_probs=171.1
Q ss_pred CceeEEeeccccceEeeeecccccc---------ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC-c----
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF---------GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-E---- 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~---------~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~---- 68 (304)
+++|.-+|..+++++=.+....... ....+++ .+..++.++.|+.+..+|..+|+.+-.+..+ .
T Consensus 86 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~ 163 (677)
T 1kb0_A 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGS 163 (677)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSS
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcC
Confidence 4678889999998864433321110 0122333 3567778889999999999999876555433 1
Q ss_pred CcEEE-EEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEEecccee---------------------------
Q psy4754 69 NRVSC-LQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACYKKDSIL--------------------------- 114 (304)
Q Consensus 69 ~~V~~-l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~~--------------------------- 114 (304)
..+.+ ..+ .+..++.++. ++. ++.+|..+++.+..+......
T Consensus 164 ~~~~~~p~v--~~~~v~v~~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~ 239 (677)
T 1kb0_A 164 LTITGAPRV--FKGKVIIGNGGAEYGVRGY--ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAG 239 (677)
T ss_dssp CBCCSCCEE--ETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHC
T ss_pred cccccCcEE--ECCEEEEEecccccCCCCE--EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeC
Confidence 11211 111 1334444443 566 468999998888776532111
Q ss_pred ec---eeeeEEcCCCCEEEEEeCCC-------------------eEEEecCCccccceecc--Ccc-------cceeEEE
Q psy4754 115 FG---ATSVDFSVSGRLLFAGYNDY-------------------TINVWDSLKCCRVNHLM--GHE-------NRVSCLQ 163 (304)
Q Consensus 115 ~~---~~~~~~s~~~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~--~h~-------~~v~~v~ 163 (304)
.+ ...+.+++++..++.+..++ .|..+|..+++.+=++. .|. ....-+.
T Consensus 240 ~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 240 GGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEE
T ss_pred CCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEe
Confidence 00 12467888888998887664 59999998887654332 221 1222333
Q ss_pred EcCCC---cEEEEeecCCceEEEEeeecCCceEEEeecCcee--------------------------e-------eeeE
Q psy4754 164 VSPDG---TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL--------------------------F-------GATS 207 (304)
Q Consensus 164 ~sp~~---~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~--------------------------~-------~~~~ 207 (304)
...+| ..++.++.++.+ +++|.++++.+-..+..... . .-..
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l--~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~ 397 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFF--FVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP 397 (677)
T ss_dssp EEETTEEEEEEEECCTTSEE--EEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred cccCCcEeeEEEEECCCCEE--EEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence 44477 578889999985 68999888876554321100 0 0014
Q ss_pred EEEcCCCCEEEEEeC-------------------------------------------CCcEEEEeCCCceeeEEeeccc
Q psy4754 208 VDFSVSGRLLFAGYN-------------------------------------------DYTINVWDSLKCCRVNHLMGHE 244 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~h~ 244 (304)
++++|++.++.+... .+.|..||+.+++.+-++. +.
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~ 476 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HV 476 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ES
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CC
Confidence 678999888777543 1679999999998887665 44
Q ss_pred cceEEEEEccCCCEEEEeecCCeeeeccccccchhh
Q psy4754 245 NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 245 ~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~ 280 (304)
.++....+++++..+..++.|+.++.||...+....
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 456666777888888889999999999887655333
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-07 Score=78.54 Aligned_cols=208 Identities=12% Similarity=0.102 Sum_probs=134.5
Q ss_pred eeeeeecCCcC--cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCC
Q psy4754 59 CRVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YND 135 (304)
Q Consensus 59 ~~~~~~~~h~~--~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~d 135 (304)
+.+.++ .|.. ....+.|++|+.++++.+..+.-.++..|+.+++.+..+......++ ..+++. ++.++.+ -.+
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg-eGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG-EGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE-EEEEEE--TTEEEEEETTC
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce-EEEEEe--CCEEEEEEecC
Confidence 344444 3443 46799999987666666542222357899999888877654332221 233443 5556554 457
Q ss_pred CeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc---eeeeeeEEEEcC
Q psy4754 136 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFGATSVDFSV 212 (304)
Q Consensus 136 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~ 212 (304)
+.+.++|..+.+.+.++.--... ...+++|++.++.+..++. +.++|..+.+.+..+.... .....+.+.|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~--l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSI--LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCe--EEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 99999999888777765321122 2335567766665555555 4689998877766654321 11235677787
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeEEeeccc-------------cceEEEEEccCCC-EEEEeecCCeeeeccccc
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-------------NRVSCLQVSPDGT-AFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~ 275 (304)
+|+.++....++.|.+.|..+++.+.++.-.. ...+.|+|+|++. .++++....++..-++.+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 77777777678899999999999888875321 2558999999875 677777777776555543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=88.13 Aligned_cols=235 Identities=9% Similarity=-0.015 Sum_probs=140.7
Q ss_pred CceeEEeeccccceEeeeeccc-----cccceeEEEEcCCCCEEEEeeC--CCcEEE--EeCCCceeeeeecCCcCcEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS-----ILFGATSVDFSVSGRLLFAGYN--DYTINV--WDSLKCCRVNHLMGHENRVSC 73 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~g~~l~tg~~--dg~v~i--wd~~~~~~~~~~~~h~~~V~~ 73 (304)
+++|.+||+.++++...+.... ....-..++|+|||++++.+.. +..+.+ +|+.+ ++.+..- +.
T Consensus 95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~--- 167 (368)
T 1mda_H 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC--- 167 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---
T ss_pred CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---
Confidence 5789999999999887765430 0122457999999998887754 467888 99876 3333210 11
Q ss_pred EEECCCCC-eEEEEeCCCceEEEEeeeCC----CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-
Q psy4754 74 LQVSPDGT-AFSSGSWDTTLRCRLFDLRA----DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC- 147 (304)
Q Consensus 74 l~~s~d~~-~l~sgs~D~~i~~~~wd~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~- 147 (304)
..+.|+++ .+++.+.|+.+ ...|+.. ...+..........+..... ++++..++..+. +.|.+.|..+..
T Consensus 168 ~~~~p~g~~~~~~~~~dg~~--~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~ 243 (368)
T 1mda_H 168 FHIHPGAAATHYLGSCPASL--AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGA 243 (368)
T ss_dssp CCCEEEETTEEECCCCTTSC--EEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCC
T ss_pred eEEccCCCeEEEEEcCCCCE--EEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcc
Confidence 12234443 44455566664 3456554 11111000000000001113 556666666666 899999875422
Q ss_pred -cceecc-------C---cccceeEEEEcCCCcEEEEeec-C--------CceEEEEeeecCCceEEEeecCceeeeeeE
Q psy4754 148 -RVNHLM-------G---HENRVSCLQVSPDGTAFSSGSW-D--------TTLRCRLFDLRADKEVACYKKDSILFGATS 207 (304)
Q Consensus 148 -~~~~~~-------~---h~~~v~~v~~sp~~~~las~s~-d--------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~ 207 (304)
.+..+. . .......++++||++.+..+.. + ..+ .++|+.+.+.+..+.... .+..
T Consensus 244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~--~ViD~~t~~vv~~i~vg~---~p~g 318 (368)
T 1mda_H 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT--SSVTASVGQTSGPISNGH---DSDA 318 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE--EEEESSSCCEEECCEEEE---EECE
T ss_pred eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE--EEEECCCCeEEEEEECCC---Ccce
Confidence 111110 0 1111222689999987775433 2 233 489999988877765443 4688
Q ss_pred EEEcCCCC-EEEEEe-CCCcEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 208 VDFSVSGR-LLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 208 ~~~s~~g~-~l~sg~-~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
++|+|||+ .+++.. .+++|.++|..+++.+.++.... ....+++.+
T Consensus 319 i~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred EEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 99999998 456666 58999999999999998887654 345666654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-07 Score=78.62 Aligned_cols=193 Identities=7% Similarity=0.039 Sum_probs=130.5
Q ss_pred eeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCee
Q psy4754 29 ATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE 104 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~ 104 (304)
...++|++++.++++.+. ++.|++.|+.+++.+..+.... .-...+++. ++.|..+.+ ++. +.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~--v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI--GFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE--EEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE--EEEEECCCCcE
Confidence 468999998776666554 6899999999998887764222 122345554 556666565 445 57899988888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--cc---cceeEEEEcCCCcEEEEeecCCc
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HE---NRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+..++.. . .....+++|++.++.+..++.|.++|..+.+.+.++.- +. ..++.+.|. +++.++....++.
T Consensus 99 ~~~i~~g-~---~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 99 IKNFTHQ-M---KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEECC-S---SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEECC-C---CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 8776543 0 12345677888888777789999999988766555431 11 236678887 7776666555666
Q ss_pred eEEEEeeecCCceEEEeecCce-----------eeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCC
Q psy4754 180 LRCRLFDLRADKEVACYKKDSI-----------LFGATSVDFSVSGRLLFA-GYNDYTINVWDSL 232 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~ 232 (304)
| .+.|..+++.+..+..... ....+.++|+|+++.+++ +....++...++.
T Consensus 174 V--~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 174 I--ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp E--EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred E--EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 4 6899999998877754211 013479999999875554 5566777777654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-07 Score=77.20 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
...+.|+ ++.++.+.+.+| .|+.+|+.+++.++.+.... ......+.++++.|....|.... +.++|..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~-v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL-GFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE-EEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE-EEEEECccCcEEE
Confidence 5789998 677778888876 99999999999887765432 33332233346666666664432 5789999888887
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC----cc-cceeEEEEcCCCcEEEEeecCCceE
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----HE-NRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----h~-~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
.++... ....+.++++.|+....++.|.++|..+.+.+.++.- .. ..++.+.+. +|+.++..-.+..|
T Consensus 122 ti~~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I- 194 (262)
T 3nol_A 122 SFNYDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI- 194 (262)
T ss_dssp EEECSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE-
T ss_pred EEECCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE-
Confidence 776532 2234556777777766688899999888776655432 11 334567776 77766665456654
Q ss_pred EEEeeecCCceEEEeecCce----------eeeeeEEEEcCCCCEEEEEe
Q psy4754 182 CRLFDLRADKEVACYKKDSI----------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~s~~g~~l~sg~ 221 (304)
.+.|.++++.+..+..... ..-.+.+|++|+++.|+..+
T Consensus 195 -~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 195 -VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6899999998877754311 11248899999987766665
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-06 Score=73.66 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=129.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
...++|+++|.++++-..++.|..||.... ....+. -......+++.++|+++++.......++..+|..+++.....
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 578999999998888778899999998653 222222 234678899999999766654332322345565555433222
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cce---------eccCcccceeEEEEcCCCcEEEEee-cC
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVN---------HLMGHENRVSCLQVSPDGTAFSSGS-WD 177 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~---------~~~~h~~~v~~v~~sp~~~~las~s-~d 177 (304)
...... ....+...+++..+++-..++.|.++|..+.. .+. ...+.......+ +|+++.+..+. ..
T Consensus 112 ~~~~~~-~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 112 TLPDAI-FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp ECTTCS-CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred eCCCcc-ccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 211110 11233344444334443458889998875421 111 001111234555 78886655444 44
Q ss_pred CceEEEEeeecC-Cce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee--EEeeccccceEEEEE
Q psy4754 178 TTLRCRLFDLRA-DKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQV 252 (304)
Q Consensus 178 ~~i~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~--~~~~~h~~~i~~l~~ 252 (304)
+. |..+++.. ++. ...+... .....+++.++|+++++....+.|.++|.. ++.. ..+.......++++|
T Consensus 189 ~~--I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~ 262 (306)
T 2p4o_A 189 ML--LLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAF 262 (306)
T ss_dssp TE--EEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred CE--EEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEE
Confidence 55 46777754 221 1111111 124678899999998887778899999965 4432 223333356899999
Q ss_pred c---cCCCEEEEeec
Q psy4754 253 S---PDGTAFSSGSW 264 (304)
Q Consensus 253 s---p~g~~lasgs~ 264 (304)
. |++..|...+.
T Consensus 263 ~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 263 GQTEGDCTAIYVVTN 277 (306)
T ss_dssp CCSTTTTTEEEEEEC
T ss_pred ecccCCCCEEEEECC
Confidence 8 88765554443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-07 Score=80.46 Aligned_cols=218 Identities=14% Similarity=0.113 Sum_probs=136.7
Q ss_pred CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeece
Q psy4754 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 117 (304)
Q Consensus 38 g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~ 117 (304)
+..+..++.++.+..+|.. ++.......+...+.++...++++.+ .++.++.+ ..+|.. ++....+..... .+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~-vgt~~~~l--~~~d~~-g~~~~~~~~~~~--~~ 179 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIY-VGSNDNYL--YAINPD-GTEKWRFKTNDA--IT 179 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEE-EECTTSEE--EEECTT-SCEEEEEECSSC--CC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEE-EEcCCCEE--EEECCC-CCEeEEEecCCC--ce
Confidence 4456677788999999988 66555554455556667777777644 45666664 578877 665555543221 23
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEee
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK 197 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~ 197 (304)
.++.+.+++. +..++ +.+..+| .+++.+.........+.++...+++..++ ++.++.+ ..+|. +++.+..+.
T Consensus 180 ~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl--~~~~~-~g~~~~~~~ 251 (330)
T 3hxj_A 180 SAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHL--YAINP-DGTEKWRFK 251 (330)
T ss_dssp SCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEE--EEECT-TSCEEEEEE
T ss_pred eeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeE--EEECC-CCCEeEEee
Confidence 4555666666 44444 8899999 55555544444446688888888886555 4556654 35564 344443333
Q ss_pred cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 198 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.... ....+.+.+++. |..++.++.+..+|. +++.+..+......+.++...++|..++ |+.++.+++...+.
T Consensus 252 ~~~~--~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 252 TGKR--IESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp CSSC--CCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred CCCC--ccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 3221 123344555665 456777888999995 6666666655566778888888887654 77889988775433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-10 Score=100.69 Aligned_cols=183 Identities=15% Similarity=0.065 Sum_probs=100.3
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccc-
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN- 157 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~- 157 (304)
++..+++++.|+.+ ..||..+++.++.++. . .+.+..+..++..+++++.|+.|+.||..+++.+-....+..
T Consensus 8 ~~~~v~~gs~dg~v--~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSL--HAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEE--EEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEE--EEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 47789999999985 6899999998887765 2 122333456676777778999999999887765544332211
Q ss_pred ceeE-EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 158 RVSC-LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 158 ~v~~-v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
.+.+ ..+. ++..+++++.|+.+ ..||.++++.+-.+.... ...++|++..+++++.|+.|+.||..+++.
T Consensus 82 ~~~~sp~~~-~~~~v~~g~~dg~v--~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMGKKQDIW--YVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp HHTTCSCC------CCCCEEEEEE--EEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ccccCceEe-cCCEEEEEeCCCEE--EEEECCCCcEEEEecCCC------cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 0111 34467778888875 689999887754443322 234567888999999999999999998887
Q ss_pred eEEeeccccceEEEEEccCC---CEEEEeecCCeeeeccccccch
Q psy4754 237 VNHLMGHENRVSCLQVSPDG---TAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g---~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+.++..+. ....+++++. ..+..++.|+.|..||...+..
T Consensus 153 ~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 153 RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 65544221 2233444432 4566788899999998766543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7e-07 Score=78.04 Aligned_cols=258 Identities=9% Similarity=-0.019 Sum_probs=151.2
Q ss_pred CceeEEeeccccceEeeeecccc-------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI-------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~-------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
++.|..||..+++++-....... ...+.+ ....++..++.++.++.|..+|..+|+.+-.............
T Consensus 62 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~ 140 (376)
T 3q7m_A 62 AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 140 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCE
Confidence 56799999999987644443211 111222 1122355677788999999999999876644433222111112
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeec---eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG---ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
.. +..++.++.++.+ ..+|..+++.+..+........ .....+. +..++.+..++.+..+|..+++.+-+.
T Consensus 141 ~~--~~~v~v~~~~g~l--~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 141 VS--DGLVLIHTSNGQL--QALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp EE--TTEEEEECTTSEE--EEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred EE--CCEEEEEcCCCeE--EEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 22 3467777778874 6789888888776654322110 0111222 456788888999999998877654333
Q ss_pred cCcc--cc--ee---EEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 153 MGHE--NR--VS---CLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 153 ~~h~--~~--v~---~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
.... .. +. .+...| .+..+..++.++.+ ..+|.++++.+-...... ...+. .++..+..++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l--~~~d~~tG~~~w~~~~~~----~~~~~--~~~~~l~~~~~~ 286 (376)
T 3q7m_A 215 RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL--TALDLRSGQIMWKRELGS----VNDFI--VDGNRIYLVDQN 286 (376)
T ss_dssp ECCC-----------CCCCCCEEETTEEEEECTTSCE--EEEETTTCCEEEEECCCC----EEEEE--EETTEEEEEETT
T ss_pred ecccCCCCcccccccccCCCcEEECCEEEEEecCcEE--EEEECCCCcEEeeccCCC----CCCce--EECCEEEEEcCC
Confidence 2110 00 00 011111 23456666677775 578888877654333221 12222 246677778889
Q ss_pred CcEEEEeCCCceeeEEeec-cccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 224 YTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+.+..+|..+++.+..... ....+....+ .+..|..++.++.+..++...+.
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 9999999999987766542 2222333333 24677788889999999876654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-06 Score=75.08 Aligned_cols=250 Identities=9% Similarity=-0.079 Sum_probs=148.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcE-----EEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV-----SCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V-----~~l~~s 77 (304)
++.|..+|..+++++-......... ...... +..++.++.++.+..+|..+|+.+-......... ......
T Consensus 112 ~g~l~a~d~~tG~~~W~~~~~~~~~--~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 112 KAQVYALNTSDGTVAWQTKVAGEAL--SRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCC--SCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCceE--cCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence 5679999999998764444332111 111221 4467778899999999999987665443321110 111222
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeec--------e-eeeEEcCCCCEEEEEeCCCeEEEecCCcccc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG--------A-TSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 148 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~--------~-~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~ 148 (304)
+..++.++.++.+ ..+|..+++.+........... + ....+ .+..++.++.++.+..+|..+++.
T Consensus 188 --~~~v~~g~~~g~l--~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 188 --FGAAVVGGDNGRV--SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp --TTEEEECCTTTEE--EEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCE
T ss_pred --CCEEEEEcCCCEE--EEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcE
Confidence 3467777778774 6788888887766543211000 0 01111 256788888899999999888765
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEE
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 228 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~i 228 (304)
+-.... .....+.. ++..+..++.++.+ ..+|..+++.+-....... ........ .+..|..++.++.+..
T Consensus 262 ~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l--~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 262 MWKREL--GSVNDFIV--DGNRIYLVDQNDRV--MALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHW 332 (376)
T ss_dssp EEEECC--CCEEEEEE--ETTEEEEEETTCCE--EEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred EeeccC--CCCCCceE--ECCEEEEEcCCCeE--EEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEE
Confidence 543321 22334444 34466666777775 5789888876543331110 00111111 3567888888999999
Q ss_pred EeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+|..+++.+.........+.+..... +..|..++.|+.|..++
T Consensus 333 ~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 333 INVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred EECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence 99999988877665333433221222 45667778888887764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-07 Score=75.25 Aligned_cols=179 Identities=9% Similarity=0.035 Sum_probs=120.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEE--EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS--CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~--~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
...+.|+ ++.++.+.+.+|.|+++|+.+++.++.+ -. .... .+++ +++.|....|.... +.++|..+.+.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~--~g~~Ly~ltw~~~~-v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLAS--DGERLYQLTWTEGL-LFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEE--CSSCEEEEESSSCE-EEEEETTTTEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEE--eCCEEEEEEccCCE-EEEEECCcCcEEE
Confidence 4678887 4677789999999999999999888776 22 2332 3555 45555555554333 5899999988888
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--cc---cceeEEEEcCCCcEEEEeecCCceE
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HE---NRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
.++.... ...+.++++.|+....++.|.++|..+.+.+.++.- +. ..++.+.+. +|+.++..-.+..|
T Consensus 131 ti~~~~e-----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I- 203 (268)
T 3nok_A 131 TTRYSGE-----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV- 203 (268)
T ss_dssp EEECSSC-----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE-
T ss_pred EEeCCCc-----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE-
Confidence 7765322 234456788888877799999999888776655432 22 234667776 77767665455554
Q ss_pred EEEeeecCCceEEEeecCce-----------eeeeeEEEEcCCCCEEEEEe
Q psy4754 182 CRLFDLRADKEVACYKKDSI-----------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~g~~l~sg~ 221 (304)
.+.|.++++.+..+..... ..-.+.+|++|+++.|+..+
T Consensus 204 -~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 -LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6899999988777753311 01247899999866544443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.4e-07 Score=75.63 Aligned_cols=236 Identities=10% Similarity=0.045 Sum_probs=141.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--------------------CCcCcEEEEEECC-CCCeEEEEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--------------------GHENRVSCLQVSP-DGTAFSSGS 87 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--------------------~h~~~V~~l~~s~-d~~~l~sgs 87 (304)
..++++.++|.+++++..++.|..|+..++... .+. ........+++.+ +++++++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 467899999997778888999999998765322 111 0113578899997 666555433
Q ss_pred CCCceEEEEeeeCCCeeEeEEec--c-ceeeceeeeEEcC-CCCEEEEEeC-----------------CCeEEEecCCcc
Q psy4754 88 WDTTLRCRLFDLRADKEVACYKK--D-SILFGATSVDFSV-SGRLLFAGYN-----------------DYTINVWDSLKC 146 (304)
Q Consensus 88 ~D~~i~~~~wd~~~~~~~~~~~~--~-~~~~~~~~~~~s~-~~~~l~sg~~-----------------dg~i~iwd~~~~ 146 (304)
...+ ..+|...+. +..+.. . ........+++.+ ++...++-.. ++.|..||..+.
T Consensus 100 -~~~i--~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 100 -YYHL--SVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp -TTEE--EEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred -CCCE--EEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 3333 456655332 222211 1 1111246788899 8876665322 367888886544
Q ss_pred ccceeccCcccceeEEEEcCCCcEEEEe-ecCCceEEEEeeecCCc--eEEEeecCceeeeeeEEEEcCCCCEEEEEeC-
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDTTLRCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYN- 222 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~~~las~-s~d~~i~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~- 222 (304)
+. ..+.........++++|+++.+..+ +..+.| +.+++.... ....+... .. ...+++.++|++.++...
T Consensus 176 ~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I--~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 176 ET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQI--VKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp EE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEE--EEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEEE
T ss_pred EE-EEeccCCccCcceEECCCCCEEEEEeCCCCeE--EEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecCc
Confidence 32 1111112345789999999865544 445554 577776421 11222111 11 567899999998877654
Q ss_pred ---------CCcEEEEeCCCceeeEEeeccc----cceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 223 ---------DYTINVWDSLKCCRVNHLMGHE----NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 223 ---------d~~i~iwd~~~~~~~~~~~~h~----~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.+.|..+|. .++.+..+.... ..+.++++ .+++.+++......|..+++...+
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 456888886 466666665432 45777777 577888888788889888876555
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-07 Score=85.86 Aligned_cols=192 Identities=13% Similarity=0.020 Sum_probs=126.8
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEE-c-CCCCEEEEEe------------------CCCeE
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF-S-VSGRLLFAGY------------------NDYTI 138 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~-s-~~~~~l~sg~------------------~dg~i 138 (304)
||++|.....+.. ++.+.|+.+.+....++... ......+++ + |++++++.++ .++.+
T Consensus 100 DG~~lfVnd~~~~-rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANT-RVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTT-EEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCC-EEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7887777666554 25788998887766443211 113456666 5 8999998884 35689
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc---------------e---------------------EE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---------------L---------------------RC 182 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---------------i---------------------~i 182 (304)
.++|..+.+...++.--. ....++++|||+++++.+.+.. + .+
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999988877666543211 3566889999999888875541 1 12
Q ss_pred EEeeecC--Cce-EEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCce------------eeEEeeccccc
Q psy4754 183 RLFDLRA--DKE-VACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCC------------RVNHLMGHENR 246 (304)
Q Consensus 183 ~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~------------~~~~~~~h~~~ 246 (304)
.+.|.++ .+. +..+... ....++.++|||+++++++ .+.+|.++|..+.+ .+.+.. -...
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g 332 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG 332 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred EEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence 3445544 222 2222211 1346789999999877754 56889999988642 223332 2245
Q ss_pred eEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 247 VSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 247 i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
...++|+|+|..+++.-.|.+|..|+++...
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhh
Confidence 7889999999667778889999999987743
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-07 Score=86.70 Aligned_cols=240 Identities=16% Similarity=0.134 Sum_probs=132.9
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------cEEEEeCCCcee--eeee-cCCcCcEEEEEECCCCCeEEEEeCCCceEEE
Q psy4754 31 SVDFSV-SGRLLFAGYNDY-----------TINVWDSLKCCR--VNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 95 (304)
Q Consensus 31 ~~~~~~-~g~~l~tg~~dg-----------~v~iwd~~~~~~--~~~~-~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~ 95 (304)
++++.+ ++++++.|+.+. .+.+||+.+++- +..+ ..+.....++++..++++++.|+.+.. .++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-KTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-CEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC-ceE
Confidence 456667 888988887653 588999887642 2222 123334445778899999999996543 368
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CC-----CeEEEecCCccc--cce-----eccCcccceeEE
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-ND-----YTINVWDSLKCC--RVN-----HLMGHENRVSCL 162 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~d-----g~i~iwd~~~~~--~~~-----~~~~h~~~v~~v 162 (304)
+||..+.+-.......... .-.++.+.++++.++.|+ .+ ..+.+||..+.+ .+. .+..... ..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~ 344 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QG 344 (656)
T ss_dssp EEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TG
T ss_pred EecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---cc
Confidence 8998765432211111111 112445556888888887 34 578999976543 110 0000000 01
Q ss_pred EEcCCCcEEEEeecCCce-------EEEEeeecCCceEEEeecCce-------eeeeeEEEEc-CCCCEEEEEeCCC---
Q psy4754 163 QVSPDGTAFSSGSWDTTL-------RCRLFDLRADKEVACYKKDSI-------LFGATSVDFS-VSGRLLFAGYNDY--- 224 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i-------~i~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~s-~~g~~l~sg~~d~--- 224 (304)
.+..++..++.++.++.+ .+..||..+............ .....++.|. .++++++.|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 123455555666555432 235677766543322211110 0012344443 4788888887432
Q ss_pred --------cEEEEeCCCceeeEEe--eccccce-EEEEEccCCCEEEEeecC-----------Ceeeeccccc
Q psy4754 225 --------TINVWDSLKCCRVNHL--MGHENRV-SCLQVSPDGTAFSSGSWD-----------TTLRDEESKN 275 (304)
Q Consensus 225 --------~i~iwd~~~~~~~~~~--~~h~~~i-~~l~~sp~g~~lasgs~D-----------~~i~~~~~~~ 275 (304)
.|.+||..+..-.... ..+..+. .+.+..|+|+.++.|+.+ ..+.+||+..
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 6778887664322211 1123332 445677899999999865 3466777644
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-07 Score=73.25 Aligned_cols=192 Identities=11% Similarity=0.088 Sum_probs=126.0
Q ss_pred eeeeecCCcC--cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCC
Q psy4754 60 RVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDY 136 (304)
Q Consensus 60 ~~~~~~~h~~--~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg 136 (304)
.++.+ .|.. -.+.|.|+ ++.++.|.+.++.-.++.+|+.+++.+.........++ -.++ ++++.++.. ..++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fg-eGit--~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFG-EGIS--DWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCE-EEEE--EETTEEEEEESSSS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccce-eEEE--EeCCEEEEEEeeCC
Confidence 34444 3543 35789998 67778888887744468899999988877665433222 1233 345555554 4589
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC---ceeeeeeEEEEcCC
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSVS 213 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~~ 213 (304)
.+.+||..+.+.+.++.-- ..=..+ ++|++.++.+..++. ++++|..+.+.+..+... ......+.+.+. +
T Consensus 108 ~v~v~D~~t~~~~~ti~~~-~eG~gl--t~dg~~L~~SdGs~~--i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD-GEGWGL--THNDQYLIMSDGTPV--LRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp EEEEEETTTCCEEEEEECS-SCCCCE--EECSSCEEECCSSSE--EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECccCcEEEEEECC-CCceEE--ecCCCEEEEECCCCe--EEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 9999999988877766432 222334 356666665544454 468999888776665432 111234556775 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeecc------------ccceEEEEEccCCC-EEEEe
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGH------------ENRVSCLQVSPDGT-AFSSG 262 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h------------~~~i~~l~~sp~g~-~lasg 262 (304)
|+..+....+..|.+.|..+++.+..+.-. ..-.+.|||+|++. .++||
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 877777767889999999999988877542 12458899999765 45555
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-07 Score=88.09 Aligned_cols=277 Identities=12% Similarity=0.078 Sum_probs=146.5
Q ss_pred eeEEeeccccceE--eeeeccccccceeEEEEcCCCCEEEEeeC-CCcEEEEeCCCceee--eeecCCcCcEEEEEECCC
Q psy4754 5 HCRLFDLRADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~g~~l~tg~~-dg~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~d 79 (304)
.+.+||+.+++-. ...+.. +.....++++.++|++++.|+. +..+.+||+.+++-. ..+..... -.++++.++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~-~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~~d 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTK-HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATMSD 297 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECS-CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEECTT
T ss_pred EEEEEeCCCCcEEeCcccCCC-CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEecC
Confidence 5889999998532 222211 1112456778899999999984 568999998776422 22211111 124556678
Q ss_pred CCeEEEEe-CCCc---eEEEEeeeCCCeeEeEEec--cceeeceeeeEEcCCCCEEEEEeCC---------CeEEEecCC
Q psy4754 80 GTAFSSGS-WDTT---LRCRLFDLRADKEVACYKK--DSILFGATSVDFSVSGRLLFAGYND---------YTINVWDSL 144 (304)
Q Consensus 80 ~~~l~sgs-~D~~---i~~~~wd~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~sg~~d---------g~i~iwd~~ 144 (304)
++.++.|+ .++. -.+.+||..+.+-...... ......-....+..++..++.|+.+ ..+..||..
T Consensus 298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 99999888 4421 1246788876542211000 0000000011223445554555444 456778766
Q ss_pred ccccceeccCcc---------cceeEEEEc-CCCcEEEEeecCCc---------eEEEEeeecCCceEEEe--ecCceee
Q psy4754 145 KCCRVNHLMGHE---------NRVSCLQVS-PDGTAFSSGSWDTT---------LRCRLFDLRADKEVACY--KKDSILF 203 (304)
Q Consensus 145 ~~~~~~~~~~h~---------~~v~~v~~s-p~~~~las~s~d~~---------i~i~~~d~~~~~~~~~~--~~~~~~~ 203 (304)
+..-......+. ..-.++.|. .++++++.|+.+.. ..+.+||..+.+..... ..... -
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R 456 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-R 456 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-C
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-c
Confidence 543222111111 122344443 37888888885420 12467787665543322 10100 0
Q ss_pred eeeEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCce--eeEEeeccccceEEEEEccCCCEEEEeecC---Ce
Q psy4754 204 GATSVDFSVSGRLLFAGYND-----------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TT 267 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d-----------~~i~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~g~~lasgs~D---~~ 267 (304)
.-.+.+..|++++++.|+.+ ..+.+||..+.+ .+..+........+..+.|||+.++.|+.. ..
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~ 536 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT 536 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCS
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCCC
Confidence 11345677899999998754 468999986643 222222222233455677999999999852 23
Q ss_pred eeeccccccchhheeec
Q psy4754 268 LRDEESKNRYMQYLLRS 284 (304)
Q Consensus 268 i~~~~~~~~~~~~~~~~ 284 (304)
+..++.+.=..+|+++.
T Consensus 537 ~~~~~~e~~~Ppyl~~~ 553 (656)
T 1k3i_A 537 TNHFDAQIFTPNYLYNS 553 (656)
T ss_dssp CCCCEEEEEECGGGBCT
T ss_pred CCeeEEEEEeChhhccC
Confidence 44444444445566543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-07 Score=78.00 Aligned_cols=244 Identities=13% Similarity=0.074 Sum_probs=144.6
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
++.+..|| .+++.+.. .......+.++...++|.+++ ++.+ +..+|. +++.+..+...........+. +..
T Consensus 39 ~~~l~~~d-~~g~~~~~--~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~ 109 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWF--FKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDI 109 (330)
T ss_dssp TTTTEEEC-TTSCEEES--SCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTE
T ss_pred CCEEEEEC-CCCcEEEE--EecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCE
Confidence 45688889 77776433 222222356777777776554 4444 888886 565544443333222233333 445
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
|..++.++.+ ..+|.. ++.......... .+.++...+++. ++.++.++.+..+|.. ++.+..+......+.++
T Consensus 110 l~v~t~~~~l--~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 110 LYVTSMDGHL--YAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp EEEECTTSEE--EEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred EEEEecCCEE--EEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 6667777764 567776 555554443221 233455566665 6667788999999987 55444444444567777
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
.+.+++..++.. +.+ ..+| .+++....+.... ..+.++...++|.+.+ ++.++.+..+|. ++..+..+..
T Consensus 183 ~~d~~g~l~v~t---~~l--~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 183 SIGKDGTIYFGS---DKV--YAIN-PDGTEKWNFYAGY--WTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp EECTTCCEEEES---SSE--EEEC-TTSCEEEEECCSS--CCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEEC
T ss_pred EEcCCCEEEEEe---CEE--EEEC-CCCcEEEEEccCC--cceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeC
Confidence 888888766654 443 5778 5555544433222 2346677788876554 556778888874 5556666655
Q ss_pred cccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
....+.++.+.+++. |..++.++.|..++.
T Consensus 253 ~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 253 GKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred CCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 555555667766665 445667777777775
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.9e-06 Score=67.81 Aligned_cols=181 Identities=11% Similarity=0.041 Sum_probs=120.1
Q ss_pred eeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeeecCCcCcE-EEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRV-SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~~~h~~~V-~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
...+.|+. +.++.+.+.+| .|+.+|+.+++.++.+....... ..+++ +++.|....|.... +.++|..+.+.+
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~-v~v~D~~tl~~~ 98 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHE-GFVYDLATLTPR 98 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSE-EEEEETTTTEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCE-EEEEECCcCcEE
Confidence 67899986 56777777764 99999999998887765332221 23444 35556555553332 578999998888
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--cc---cceeEEEEcCCCcEEEEeecCCce
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HE---NRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~sp~~~~las~s~d~~i 180 (304)
..++... ....+.++++.|+....++.|.++|..+.+.+.++.- +. ..++.+.+. +|+.++..-.+..
T Consensus 99 ~ti~~~~-----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~- 171 (243)
T 3mbr_X 99 ARFRYPG-----EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR- 171 (243)
T ss_dssp EEEECSS-----CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE-
T ss_pred EEEeCCC-----CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe-
Confidence 8776532 2344456777777777789999999888776555432 22 234566665 7776665544555
Q ss_pred EEEEeeecCCceEEEeecCce-----------eeeeeEEEEcCCCCEEEEEe
Q psy4754 181 RCRLFDLRADKEVACYKKDSI-----------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~g~~l~sg~ 221 (304)
|.+.|.++++.+..+..... ..-.+.++++|+++.|+..+
T Consensus 172 -I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 -IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp -EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 46899999998877653311 11247899999877666554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.2e-06 Score=72.57 Aligned_cols=236 Identities=10% Similarity=0.021 Sum_probs=134.1
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCce--EEEEeeeCCCee
Q psy4754 29 ATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTL--RCRLFDLRADKE 104 (304)
Q Consensus 29 i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i--~~~~wd~~~~~~ 104 (304)
...++++| ++..|+.+...+.|+.+|+..+.... +.........++|.++++.|+.+.. ++.+ .+...+ ..+..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCce
Confidence 47899998 34555555444899999997765333 3334455778999999995554433 2221 122222 22211
Q ss_pred E--eEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceec-cCcccceeEEEEcCCCcEEEEe-ecCCc
Q psy4754 105 V--ACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSG-SWDTT 179 (304)
Q Consensus 105 ~--~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~-s~d~~ 179 (304)
. ..+.. ......++++| ++..+++-...+.|..++.......... .+.......++|+|+++++..+ ...+.
T Consensus 217 ~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 217 KVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp CSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 1 11111 12346788999 5665555556789999997654321111 1112356789999999955444 44555
Q ss_pred eEEEEeeecCC--ce--EEEeecC-------------ceeeeee-EEEEc--------CCCCEEEEEeCCCcEEEEeCCC
Q psy4754 180 LRCRLFDLRAD--KE--VACYKKD-------------SILFGAT-SVDFS--------VSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 180 i~i~~~d~~~~--~~--~~~~~~~-------------~~~~~~~-~~~~s--------~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
| +.++.... +. ...+... ....... .++.. ++|.++++=...+.|+.++. .
T Consensus 294 I--~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~ 370 (430)
T 3tc9_A 294 I--LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-Q 370 (430)
T ss_dssp E--EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-T
T ss_pred E--EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-C
Confidence 4 45655431 11 1111110 0011223 44443 45777777666778999983 4
Q ss_pred ceeeEEeecc------------------ccceEEEEEcc-CCCEEEEeecCCeeeeccc
Q psy4754 234 CCRVNHLMGH------------------ENRVSCLQVSP-DGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 234 ~~~~~~~~~h------------------~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~ 273 (304)
+. +.++.+. -.....|+++| ++.++++-.....||-.++
T Consensus 371 G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 43 3333322 12578999999 5788888777788887664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=7e-05 Score=61.99 Aligned_cols=227 Identities=9% Similarity=-0.009 Sum_probs=126.1
Q ss_pred CEEEEeeCCCcEEEEeCCCceee-----eeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCeeEeEEeccc
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRV-----NHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDS 112 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~-----~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~ 112 (304)
++|+.+.. +.|+.+++...... ..+.........++|.++++.|+ +....+.| ..++............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I--~~~~~~g~~~~~~~~~-- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI--GRASLHGGEPTTIIRQ-- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEE--EEEESSSCCCEEEECT--
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEE--EEEecCCCCcEEEEEC--
Confidence 44444433 47888887644321 11111224567899999765554 44445554 5677765433222221
Q ss_pred eeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC---CceEEEEeeec
Q psy4754 113 ILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRCRLFDLR 188 (304)
Q Consensus 113 ~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d---~~i~i~~~d~~ 188 (304)
.......+++++++..++.+. ..+.|.+++...................++++|++..+..+... +. |..++..
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~--I~~~~~d 154 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK--IETSHMD 154 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE--EEEEETT
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE--EEEEecC
Confidence 112356788998776666654 46789998875432111111122457899999965544433332 34 3456654
Q ss_pred CCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 189 ADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.... ..+.... ......++++|++..| ++-...+.|.++|.........+.+ ......+++. ++..+++....+.
T Consensus 155 g~~~-~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 155 GTNR-RILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp SCCC-EEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCCc-EEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCe
Confidence 3222 2221111 1246789999987655 5555567899999875433332332 2334567665 4556666656688
Q ss_pred eeecccccc
Q psy4754 268 LRDEESKNR 276 (304)
Q Consensus 268 i~~~~~~~~ 276 (304)
|...+...+
T Consensus 231 v~~~d~~~g 239 (267)
T 1npe_A 231 VIAMDLAIS 239 (267)
T ss_dssp EEEEETTTT
T ss_pred EEEEeCCCC
Confidence 888876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=0.00015 Score=61.90 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=131.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCC---ceeeee-ecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK---CCRVNH-LMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~---~~~~~~-~~~h~~~V~~l~~s 77 (304)
...|+..|+.+.+...... ......+++|.+.+ .++++-...+.|..+++.. +..... +...-.....+++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd 85 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred CCeEEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence 4568999998876443322 12346889999865 5666767779999999875 122222 22222345688887
Q ss_pred CCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC--CeEEEecCCccccceec-c
Q psy4754 78 PDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--YTINVWDSLKCCRVNHL-M 153 (304)
Q Consensus 78 ~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~-~ 153 (304)
+.+ +++++-...+.| .+.|+............ ......+++.|.+..++..... +.|...++.... ...+ .
T Consensus 86 ~~~~~ly~~d~~~~~I--~~~~~~g~~~~~~~~~~--~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~ 160 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTV--SVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT 160 (316)
T ss_dssp TTTTEEEEEETTTTEE--EEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred ecCCeEEEEECCCCEE--EEEeCCCCceEEEEECC--CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE
Confidence 644 455555555664 56776543322222211 1234678899877777666543 688888764322 2222 1
Q ss_pred CcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
..-.....|+++|++..+..+. ..+. |..+|+.................+..+++. .+.++++-...+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~--I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCe--EEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 2234678999998766555443 4445 457777643322222211111234566774 46677777777889999877
Q ss_pred CceeeEEeec
Q psy4754 233 KCCRVNHLMG 242 (304)
Q Consensus 233 ~~~~~~~~~~ 242 (304)
+++.+..+..
T Consensus 238 ~g~~~~~i~~ 247 (316)
T 1ijq_A 238 TGSDVNLLAE 247 (316)
T ss_dssp TCCCCEEEEC
T ss_pred CCcceEEEec
Confidence 7766655543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-05 Score=71.26 Aligned_cols=235 Identities=12% Similarity=0.068 Sum_probs=136.8
Q ss_pred eeEEEEcCC---CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC---CceEEEEeeeCCC
Q psy4754 29 ATSVDFSVS---GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRCRLFDLRAD 102 (304)
Q Consensus 29 i~~~~~~~~---g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D---~~i~~~~wd~~~~ 102 (304)
-..++|.|+ +.++++ ...+.|+.+|+.++.... +.........+++.++|+++++.... ..- +...+....
T Consensus 141 P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~g-v~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTG-IYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEE-EEEECGGGT
T ss_pred CceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccce-EEEEECCCC
Confidence 568999984 555444 333899999997776543 33344567899999999966554321 111 112222111
Q ss_pred ee-EeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceecc--CcccceeEEEEcCCCcEEEEee-cC
Q psy4754 103 KE-VACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGS-WD 177 (304)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s-~d 177 (304)
.. ..... .......+++++ ++...++-..++.|+.+|..++.....+. +.......++|+|+++.|..+. ..
T Consensus 218 ~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 218 FTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred eecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 10 01111 112245688899 55544454567889999976544312221 1112234699999998555444 44
Q ss_pred CceEEEEeeec--CCce--EEEeecC-------------ceeeeeeEEEE---------cCCCCEEEEEeCCCcEEEEeC
Q psy4754 178 TTLRCRLFDLR--ADKE--VACYKKD-------------SILFGATSVDF---------SVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 178 ~~i~i~~~d~~--~~~~--~~~~~~~-------------~~~~~~~~~~~---------s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+.| +.++.. +... ...+... ........+++ .++|.++++-...+.|+.++.
T Consensus 295 ~~I--~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 295 HCI--YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TEE--EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CEE--EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 554 565543 2211 0111110 01123567888 788888888777788999985
Q ss_pred CCceeeEEeecc------------------ccceEEEEEc-cCCCEEEEeecCCeeeeccc
Q psy4754 232 LKCCRVNHLMGH------------------ENRVSCLQVS-PDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 232 ~~~~~~~~~~~h------------------~~~i~~l~~s-p~g~~lasgs~D~~i~~~~~ 273 (304)
++ .+.++.+. -.....|+++ ++|..+++-+....||..++
T Consensus 373 -~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 44 34444332 1247889999 78888888888888887765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.62 E-value=0.00024 Score=62.75 Aligned_cols=239 Identities=9% Similarity=-0.013 Sum_probs=137.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEECC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~ 78 (304)
..|+..++.+........ ....+.+++|++.+ .++.+-...+.|+.+++... .....+.........+++.+
T Consensus 92 ~~I~~i~l~~~~~~~~~~---~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp TEEEEECTTSCSCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred ceeEEEccCCcceeEecc---ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 467777777664332221 12347899999854 45556667788999998652 12222222335567888887
Q ss_pred C-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCc
Q psy4754 79 D-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 79 d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h 155 (304)
. ++++++-...+. |.+.++........... .......+++.|.+.+++.... .+.|...++............
T Consensus 169 ~~~~lY~~d~~~~~--I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~ 244 (400)
T 3p5b_L 169 IHSNIYWTDSVLGT--VSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 244 (400)
T ss_dssp TTTEEEEEETTTTE--EEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred cCCceEEEECCCCe--EEEEeCCCCceEEEEeC--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence 4 445555555555 35677664433322221 1223567889987777777653 367888876543222112223
Q ss_pred ccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
-.....|+++|++..|..+-. .+. |+.+|+....................+++ ..+.++.+-...+.|..+|..++
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~--I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCE--EEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCC
Confidence 356789999987766655543 444 46777765443333222111123456666 34456666667788999997777
Q ss_pred eeeEEeeccccceEEEEE
Q psy4754 235 CRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~ 252 (304)
+.+..+.........|++
T Consensus 322 ~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 322 SDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp CCCEEEECSCSCEEEEEE
T ss_pred CceEEEecCCCCCceEEE
Confidence 777666554444555544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.7e-06 Score=69.22 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=123.9
Q ss_pred eeeeecCCc--CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCC
Q psy4754 60 RVNHLMGHE--NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDY 136 (304)
Q Consensus 60 ~~~~~~~h~--~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg 136 (304)
.++.+ .|. .-...|.|+ ++.++.+.+.++. ++.+|+.+++.+... .....++ ..+++ +++.++. ...++
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~--v~~iD~~Tgkv~~~~-l~~~~Fg-eGit~--~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGT--LRQLSLESAQPVWME-RLGNIFA-EGLAS--DGERLYQLTWTEG 116 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTE--EEECCSSCSSCSEEE-ECTTCCE-EEEEE--CSSCEEEEESSSC
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCE--EEEEECCCCcEEeEE-CCCCcce-eEEEE--eCCEEEEEEccCC
Confidence 34444 354 345789987 4667778888888 578999988877665 4332222 12344 3444444 45689
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc---eeeeeeEEEEcCC
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFGATSVDFSVS 213 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~~ 213 (304)
.+.+||..+.+.+.++.- ...-..++ +|++.++.+..++. +.++|..+.+.+..+.... .....+.+.+. +
T Consensus 117 ~v~V~D~~Tl~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~--l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTM--LTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEEEEETTTTEEEEEEEC-SSCCCCEE--EETTEEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCcCcEEEEEeC-CCceeEEe--cCCCEEEEECCCCE--EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 999999998887777653 22223444 56777666554555 4689998887766654322 11234566666 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeecc-------------ccceEEEEEccCC-CEEEEe
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------------ENRVSCLQVSPDG-TAFSSG 262 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g-~~lasg 262 (304)
|+.++....+..|.+.|..+++.+..+.-. ..-.+.|||+|++ ++++||
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 777766667889999999999988876542 1356889999964 566676
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-06 Score=78.40 Aligned_cols=253 Identities=11% Similarity=0.060 Sum_probs=147.6
Q ss_pred CCceeEEeeccccceEeeeecccc--ccceeEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeeeeecC--Cc---
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI--LFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMG--HE--- 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~--~~~i~~~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~~~~~--h~--- 68 (304)
.|+++..+|..+++++-....... ...+.+.-.-.++.+ +.+.. +|.|..+|..+|+.+=.+.. ..
T Consensus 125 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~ 203 (668)
T 1kv9_A 125 LDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKV-IIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPAL 203 (668)
T ss_dssp TTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred CCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEE-EEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCc
Confidence 367899999999988755443211 111211101114444 44432 58999999999876544321 00
Q ss_pred --------------------------CcEEEEEECCCCCeEEEEeCCCc-----------------eEEEEeeeCCCeeE
Q psy4754 69 --------------------------NRVSCLQVSPDGTAFSSGSWDTT-----------------LRCRLFDLRADKEV 105 (304)
Q Consensus 69 --------------------------~~V~~l~~s~d~~~l~sgs~D~~-----------------i~~~~wd~~~~~~~ 105 (304)
.....+++.++...++.++.++. -.+.-+|..+++.+
T Consensus 204 ~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 204 PYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA 283 (668)
T ss_dssp CCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred cccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee
Confidence 01124677787778877766553 02467888898888
Q ss_pred eEEecccee-------eceeeeEEcCCCC---EEEEEeCCCeEEEecCCccccceeccCcc-----------c-c-----
Q psy4754 106 ACYKKDSIL-------FGATSVDFSVSGR---LLFAGYNDYTINVWDSLKCCRVNHLMGHE-----------N-R----- 158 (304)
Q Consensus 106 ~~~~~~~~~-------~~~~~~~~s~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-----------~-~----- 158 (304)
..++..... .......+..+++ .++.++.+|.+.++|..+++.+....... . +
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTT
T ss_pred eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccc
Confidence 877642110 0111122233554 68888999999999988877652211000 0 0
Q ss_pred -------------------eeEEEEcCCCcEEEEee------------------------------------cCCceEEE
Q psy4754 159 -------------------VSCLQVSPDGTAFSSGS------------------------------------WDTTLRCR 183 (304)
Q Consensus 159 -------------------v~~v~~sp~~~~las~s------------------------------------~d~~i~i~ 183 (304)
-..++++|+...+.... .++. +.
T Consensus 364 ~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~--l~ 441 (668)
T 1kv9_A 364 VRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA--LL 441 (668)
T ss_dssp TTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE--EE
T ss_pred ccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce--EE
Confidence 01267788766655321 1234 45
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccce-EEEEEccCCCEEE
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV-SCLQVSPDGTAFS 260 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i-~~l~~sp~g~~la 260 (304)
-||+.+++.+=..+... +.....+...+.+++.|+.|+.++.||..+++.+.++....+.. .-+.+..+|+.++
T Consensus 442 A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 442 AWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (668)
T ss_dssp EEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEeCCCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence 78888877653333221 12223345578889999999999999999999998876543211 2345566777433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-05 Score=72.90 Aligned_cols=254 Identities=15% Similarity=0.038 Sum_probs=143.0
Q ss_pred CCceeEEeeccccceEeeeeccccc--cceeE-EEEcCCCCEEEEeeC------CCcEEEEeCCCceeeeeecCCcC---
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSIL--FGATS-VDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHEN--- 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~--~~i~~-~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~~~~~h~~--- 69 (304)
.|+++..+|..+++++-........ ..+.+ ... .++.+ +.++. +|.|..+|..+|+.+-.+.....
T Consensus 123 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~ 200 (571)
T 2ad6_A 123 ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDS 200 (571)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred CCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEE-EEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccc
Confidence 3678889999999886544432211 12221 111 14444 44443 79999999999876543321100
Q ss_pred ----------------------------------cE-EEEEECCCCCeEEEEeC------------CCc--eEEEEeeeC
Q psy4754 70 ----------------------------------RV-SCLQVSPDGTAFSSGSW------------DTT--LRCRLFDLR 100 (304)
Q Consensus 70 ----------------------------------~V-~~l~~s~d~~~l~sgs~------------D~~--i~~~~wd~~ 100 (304)
.+ ..+++.++...++.+.. |.. -.+.-+|..
T Consensus 201 ~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~ 280 (571)
T 2ad6_A 201 VRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD 280 (571)
T ss_dssp HTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT
T ss_pred cccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC
Confidence 00 12455565555555442 210 024678888
Q ss_pred CCeeEeEEeccce-------eeceeeeEEcCCCC---EEEEEeCCCeEEEecCCccccceecc-Cc-----------c-c
Q psy4754 101 ADKEVACYKKDSI-------LFGATSVDFSVSGR---LLFAGYNDYTINVWDSLKCCRVNHLM-GH-----------E-N 157 (304)
Q Consensus 101 ~~~~~~~~~~~~~-------~~~~~~~~~s~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-~h-----------~-~ 157 (304)
+++.+..++.... .....-+....+++ .++.++.+|.+.+.|..+++.+-... .. . .
T Consensus 281 tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~ 360 (571)
T 2ad6_A 281 TGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGT 360 (571)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCS
T ss_pred CCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCc
Confidence 8888877764311 00111122224664 56778889999999988876543321 11 0 0
Q ss_pred ce--------------------------eEEEEcCCCcEEEEeec-----------------------------------
Q psy4754 158 RV--------------------------SCLQVSPDGTAFSSGSW----------------------------------- 176 (304)
Q Consensus 158 ~v--------------------------~~v~~sp~~~~las~s~----------------------------------- 176 (304)
++ ..++++|+...+...+.
T Consensus 361 p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 440 (571)
T 2ad6_A 361 PVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTK 440 (571)
T ss_dssp EEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTS
T ss_pred eecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCC
Confidence 11 23578888777665543
Q ss_pred --CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEEEEc
Q psy4754 177 --DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVS 253 (304)
Q Consensus 177 --d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s 253 (304)
++. +..+|+.+++.+-.+..... +.+..+...+..++.++.|+.++.||..+++++.++..... .-..+.|.
T Consensus 441 ~~~g~--l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~ 515 (571)
T 2ad6_A 441 KEMGQ--IRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYS 515 (571)
T ss_dssp CCCEE--EEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCCCe--EEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEE
Confidence 233 45778777766544432211 11222233466777799999999999999999988764321 12234566
Q ss_pred cCCCEEEEe
Q psy4754 254 PDGTAFSSG 262 (304)
Q Consensus 254 p~g~~lasg 262 (304)
.+|+.++..
T Consensus 516 ~~G~~yv~~ 524 (571)
T 2ad6_A 516 FKGKQYIGS 524 (571)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 788766543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-05 Score=63.14 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=124.0
Q ss_pred eeeeecCCc--CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCC
Q psy4754 60 RVNHLMGHE--NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDY 136 (304)
Q Consensus 60 ~~~~~~~h~--~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg 136 (304)
.++.+ .|. .-...|.|++ +.++.|.+.++.-.++.+|+.+++.+.........++ ..+++ .++.++. ...++
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~--~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVA--WRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEE--ETTEEEEEESSSS
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEE--eCCEEEEEEeeCC
Confidence 34444 454 3477899986 6677777776644468899999988877665433322 12333 3444544 45689
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc---eeeeeeEEEEcCC
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFGATSVDFSVS 213 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~~ 213 (304)
.+.+||..+.+.+.++.-- ..=..++ ++++.+..+..++. +.++|..+.+.+..+.... .....+.+.+. +
T Consensus 86 ~v~v~D~~tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~--l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAV--IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp EEEEEETTTTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCcCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCe--EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence 9999999988877766432 2224444 45655555444555 5789998887766654321 11223555554 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeecc-------------ccceEEEEEccCC-CEEEEe
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------------ENRVSCLQVSPDG-TAFSSG 262 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g-~~lasg 262 (304)
|+.++....+..|.+.|..+++.+..+.-. ..-.+.|||+|++ +.++||
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 777766667789999999999988876522 1246889999965 455665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.6e-06 Score=76.59 Aligned_cols=270 Identities=13% Similarity=0.096 Sum_probs=159.9
Q ss_pred CceeEEeeccccceEeeeecccccc-------c-e-eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc----C
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF-------G-A-TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE----N 69 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~-------~-i-~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~----~ 69 (304)
+++|.-+|..+++++=.+....... . + ..+++ .+..++.++.|+.+..+|..+|+.+-.+.... .
T Consensus 75 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~ 152 (668)
T 1kv9_A 75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPY 152 (668)
T ss_dssp GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSC
T ss_pred CCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcc
Confidence 4578888999998864433221100 0 0 11222 24567788899999999999998764443211 1
Q ss_pred cEEE-EEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEEeccce--e------------------------e-
Q psy4754 70 RVSC-LQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACYKKDSI--L------------------------F- 115 (304)
Q Consensus 70 ~V~~-l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~--~------------------------~- 115 (304)
.+.+ ..+ .++ .++.+.. ++. +..+|..+++.+..+..... . .
T Consensus 153 ~~~~~P~v-~~~-~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~g 228 (668)
T 1kv9_A 153 SITGAPRV-VKG-KVIIGNGGAEYGVRGF--VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGG 228 (668)
T ss_dssp BCCSCCEE-ETT-EEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEE
T ss_pred eecCCCEE-ECC-EEEEeCCCCCcCCCCE--EEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCC
Confidence 1111 011 134 4444432 355 46789988888877653100 0 0
Q ss_pred --ceeeeEEcCCCCEEEEEeCCC-------------------eEEEecCCccccceeccC--cc-------cceeEEEEc
Q psy4754 116 --GATSVDFSVSGRLLFAGYNDY-------------------TINVWDSLKCCRVNHLMG--HE-------NRVSCLQVS 165 (304)
Q Consensus 116 --~~~~~~~s~~~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~~--h~-------~~v~~v~~s 165 (304)
.....++.++...++.+..++ .|..+|..+++.+=++.. |. .++....+.
T Consensus 229 g~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~ 308 (668)
T 1kv9_A 229 GTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN 308 (668)
T ss_dssp CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred CccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec
Confidence 012357788888888887766 399999988876544322 22 222222333
Q ss_pred CCCc---EEEEeecCCceEEEEeeecCCceEEEeecCcee---------------------------e-------eeeEE
Q psy4754 166 PDGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL---------------------------F-------GATSV 208 (304)
Q Consensus 166 p~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~---------------------------~-------~~~~~ 208 (304)
.+++ .++.++.++.+ ..+|.++++.+...+..... . .-..+
T Consensus 309 ~~G~~~~~v~~~~~~G~l--~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 309 IDGKPRKVLMQAPKNGFF--YVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp ETTEEEEEEEECCTTSEE--EEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred cCCcEEEEEEEECCCCEE--EEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 4665 68888888885 57888888766332211100 0 00125
Q ss_pred EEcCCCCEEEEEe------------------------------------CCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 209 DFSVSGRLLFAGY------------------------------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 209 ~~s~~g~~l~sg~------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
+++|+..++.... .++.|..||..+++.+-+...+ .+.....+
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~ 465 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTL 465 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEE
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCcee
Confidence 6777766554311 2377999999999887766543 33444455
Q ss_pred ccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 253 SPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 253 sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
...+..+..|+.|+.++.+|.+.+.....
T Consensus 466 ~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 466 STAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEECCcccchhhhhhcChhheE
Confidence 66778888899999999998776543333
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00015 Score=63.61 Aligned_cols=237 Identities=9% Similarity=-0.043 Sum_probs=134.2
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT- 81 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~- 81 (304)
..|+..++.+++...... ......+++|.+. +.++++-...+.|..+++........+.........+++.+.+.
T Consensus 96 ~~I~~i~~~~~~~~~~~~---~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp SCEEEECTTSCCCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE
T ss_pred ccceeeccCCCcEEEEec---CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe
Confidence 457777777654332221 1223688999975 45566666788999999876543322222223445788887544
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-C-CeEEEecCCccccceeccCcccce
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-D-YTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
++++-...+. +.+.++........... .......+++.|.+..++.... . +.|...++............-...
T Consensus 173 lY~~d~~~~~--I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~P 248 (386)
T 3v65_B 173 LYWTDSGTSR--IEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP 248 (386)
T ss_dssp EEEEETTTTE--EEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred EEEEcCCCCe--EEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCe
Confidence 4455444554 35666654332222221 1223467889987777776654 3 678888765432211112223457
Q ss_pred eEEEEcCCCcEEEEe-ecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 160 SCLQVSPDGTAFSSG-SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 160 ~~v~~sp~~~~las~-s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
..|+++|++..|..+ +..+. |..+|+............ ...+..+++ .++.++++-...+.|..++..+++.+.
T Consensus 249 nGlavd~~~~~lY~aD~~~~~--I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHV--IERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTE--EEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred eeEEEeCCCCEEEEEECCCCE--EEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence 899999866555544 33444 467776643332222211 123467777 456677777777889988876776666
Q ss_pred EeeccccceEEEEE
Q psy4754 239 HLMGHENRVSCLQV 252 (304)
Q Consensus 239 ~~~~h~~~i~~l~~ 252 (304)
.+.........|++
T Consensus 324 ~i~~~~~~p~gi~v 337 (386)
T 3v65_B 324 IIRNKLHFPMDIHT 337 (386)
T ss_dssp EEECSCSCCCCEEE
T ss_pred EEccCCCCCceEEE
Confidence 66543334444444
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-05 Score=77.21 Aligned_cols=198 Identities=12% Similarity=0.001 Sum_probs=108.2
Q ss_pred ceeEEEEc-CCCCEEEEe-eCC----CcEEEEeCCCc-eeeee-ecCCcCcEEEEEECCCCCeEEEEeCCCc---eEEEE
Q psy4754 28 GATSVDFS-VSGRLLFAG-YND----YTINVWDSLKC-CRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRL 96 (304)
Q Consensus 28 ~i~~~~~~-~~g~~l~tg-~~d----g~v~iwd~~~~-~~~~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~---i~~~~ 96 (304)
.+...+|| |||++||-+ +.+ .+|+++|+.++ +.+.. +. .....++|+|||+.|+-...|.. -+++.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 46789999 999987733 333 35999999988 63321 11 11346899999988777666532 24677
Q ss_pred eeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEe---CCCeEEEecCCccc-cc--eec-cCcccceeEEEEcCC
Q psy4754 97 FDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDSLKCC-RV--NHL-MGHENRVSCLQVSPD 167 (304)
Q Consensus 97 wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~---~dg~i~iwd~~~~~-~~--~~~-~~h~~~v~~v~~sp~ 167 (304)
+++.+.+. ...+......+ ...+.++||+++|+... ....|.++|+.+.. .. ..+ .+.......+.|+.+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLF-SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTC-EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EECCCCchhcEEEEecCCCce-EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 88876532 22332211111 24678999999888754 34567788876542 12 222 223344455555544
Q ss_pred CcEEEEeecC--CceEEEEeeecCC-ceEE-EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEE--EEeC
Q psy4754 168 GTAFSSGSWD--TTLRCRLFDLRAD-KEVA-CYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN--VWDS 231 (304)
Q Consensus 168 ~~~las~s~d--~~i~i~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~--iwd~ 231 (304)
+.+++....+ ...++..+|+.+. .... .+.... ...+..+.+. .+.++++...++..+ ++++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4444454444 3444556676542 2111 121111 1122344443 234455566677644 4564
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00066 Score=58.67 Aligned_cols=236 Identities=9% Similarity=-0.036 Sum_probs=132.7
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC-C
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG-T 81 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~-~ 81 (304)
..|+..++.+.+...... ......+++|.+.+ .++.+-...+.|..+++........+.........+++.+.+ +
T Consensus 53 ~~I~~i~~~g~~~~~~~~---~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp SCEEEECTTSCCEEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred cceEEEeCCCCeeEEeec---CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe
Confidence 346666776654332221 12236889999754 455566678899999987654332222222345678888754 4
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-C-CeEEEecCCccccceec-cCcccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-D-YTINVWDSLKCCRVNHL-MGHENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~-~~h~~~ 158 (304)
++++-...+.| .+.++........... .......+++.|.+..++.... . +.|...++.... ...+ ...-..
T Consensus 130 ly~~d~~~~~I--~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~ 204 (349)
T 3v64_C 130 LYWTDSGTSRI--EVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFW 204 (349)
T ss_dssp EEEEETTTTEE--EEEETTSCSCEEEECT--TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSC
T ss_pred EEEEcCCCCeE--EEEcCCCCceEEEEeC--CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCC
Confidence 55555555554 5667654332222221 1223467889987776666544 3 778888765322 2222 222345
Q ss_pred eeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 159 VSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 159 v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
...++++|++..|..+. ..+. |..+|+............ ...+..+++ .++.++++-...+.|..++..+++.+
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~--I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHV--IERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred cceEEEeCCCCEEEEEECCCCE--EEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 78999998666555443 3444 457776653332222211 123466777 45667777667788888886666666
Q ss_pred EEeeccccceEEEEE
Q psy4754 238 NHLMGHENRVSCLQV 252 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~ 252 (304)
..+.........|++
T Consensus 280 ~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 280 EIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEECSCSCCCCEEE
T ss_pred EEeccCCCCCceEEE
Confidence 555443333344443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00072 Score=60.98 Aligned_cols=242 Identities=11% Similarity=0.026 Sum_probs=141.2
Q ss_pred eeEEEEcCC--CCEEEEeeCCCcEEEEeCCCceeeeeecC---CcCcEEEEEE-------CCCCCeEEEEeCCC-----c
Q psy4754 29 ATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVSCLQV-------SPDGTAFSSGSWDT-----T 91 (304)
Q Consensus 29 i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~-------s~d~~~l~sgs~D~-----~ 91 (304)
...|+|+|. +.++++-...+.|++.|+.++........ .......|+| .++++.|+.+.+.+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 468999983 45555655557899999887655433322 1235789999 99999666665543 2
Q ss_pred eEEEEeeeCC-CeeE-----eEEeccceeeceeeeEEcCCCCEEE-EEeCCCeEEEecCC-------cccc---------
Q psy4754 92 LRCRLFDLRA-DKEV-----ACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSL-------KCCR--------- 148 (304)
Q Consensus 92 i~~~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~s~~~~~l~-sg~~dg~i~iwd~~-------~~~~--------- 148 (304)
..+.+.+... +... ..+. .......++++|++..|+ +-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~---~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIA---AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEE---EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ceEEEEecCCCCceeecccceeec---cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 2233443222 1110 1111 112346788899655555 45567889999976 3322
Q ss_pred --ceec--cCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCc-eE---EEeecC-------------ceeeeee
Q psy4754 149 --VNHL--MGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADK-EV---ACYKKD-------------SILFGAT 206 (304)
Q Consensus 149 --~~~~--~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~-~~---~~~~~~-------------~~~~~~~ 206 (304)
...+ .+.......|+|+|+++.+..+- ..+. |+.++..... .+ ..+... .....+.
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~--I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY--FMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE--EEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE--EEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 1111 12223467899999999655444 3444 3555543221 11 111110 0111234
Q ss_pred -EEEEc-------CCCCEEEEEeCCCcEEEEeCCCceeeEEeecc------------------------ccceEEEEEcc
Q psy4754 207 -SVDFS-------VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH------------------------ENRVSCLQVSP 254 (304)
Q Consensus 207 -~~~~s-------~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h------------------------~~~i~~l~~sp 254 (304)
.++.. ++|.++++=.....|+.++ .++ .+.++.|. -.....|++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 34444 5677777766778899998 445 34455432 12467899999
Q ss_pred C-CCEEEEeecCCeeeeccccccc
Q psy4754 255 D-GTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 255 ~-g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+ |.++++-+....||.+++..+.
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCc
Confidence 6 8888888888999988876554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.001 Score=58.28 Aligned_cols=237 Identities=10% Similarity=0.018 Sum_probs=132.1
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
+|.+..+. .+|+.+ ....|+..++........+. .......++|.+.++.| ++-...+. |+.++..........
T Consensus 80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~--I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 80 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDR--ILRANLNGSNVEEVV 154 (386)
T ss_dssp CEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCCEEEEE
T ss_pred eECCcccc-ceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCc--EEEEecCCCCcEEEE
Confidence 34444443 344333 34578888887654333232 33457789999765544 45444454 456776654332222
Q ss_pred eccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
... ......+++.+.+..|+.. ...+.|.+.++........+.........+++.|.+..+........-+|..+++
T Consensus 155 ~~~--~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 155 STG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CSS--CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eCC--CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 211 1123567888766666554 4467899988754332222223335678999998665555444333122456666
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
............ ....+.++++|++..| ++=...+.|..+|.........+.........|++ .++..+.+-...+
T Consensus 233 dG~~~~~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 309 (386)
T 3v65_B 233 DGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 309 (386)
T ss_dssp TSCSCEEEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred CCCCcEEEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence 543332222211 1235889999866554 44445678999987643322223333445678888 4567777777778
Q ss_pred eeeecccccc
Q psy4754 267 TLRDEESKNR 276 (304)
Q Consensus 267 ~i~~~~~~~~ 276 (304)
.|.-.+...+
T Consensus 310 ~V~~~~~~~G 319 (386)
T 3v65_B 310 SINSANKFTG 319 (386)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 8877764333
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00086 Score=56.99 Aligned_cols=194 Identities=13% Similarity=0.078 Sum_probs=111.8
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeec----C-CcCcEEEEEECC-CCCeEEEEeCC------------
Q psy4754 29 ATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM----G-HENRVSCLQVSP-DGTAFSSGSWD------------ 89 (304)
Q Consensus 29 i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~----~-h~~~V~~l~~s~-d~~~l~sgs~D------------ 89 (304)
...+++.+ +|.++++. ..+.+..+|..+++. +.+. + .......+++.+ +|+..++-...
T Consensus 82 p~gi~~~~~~g~l~v~d-~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 82 TYDISYNLQNNQLYIVD-CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp EEEEEEETTTTEEEEEE-TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CceEEEcCCCCcEEEEE-CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 67899997 66655543 445588899875532 2221 1 113467899999 99877764321
Q ss_pred ---CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccc--cceeccCcccceeEEE
Q psy4754 90 ---TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCC--RVNHLMGHENRVSCLQ 163 (304)
Q Consensus 90 ---~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~ 163 (304)
..-.+..+|....+...... .......++++++++.++.+ ...+.|.+|++.... ....+....+ ...++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK---ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE---EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEecc---CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 11224566765443322111 11234678999999877665 456899999876421 1111111223 77899
Q ss_pred EcCCCcEEEEeec----------CCceEEEEeeecCCceEEEeecCce--eeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 164 VSPDGTAFSSGSW----------DTTLRCRLFDLRADKEVACYKKDSI--LFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 164 ~sp~~~~las~s~----------d~~i~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+.++|+++++... .+. +..+|.. ++.+..+..... ...+..+++ .+++++++....+.|..+++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~--v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPK--GIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEE--EEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccE--EEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 9999987766543 233 3566654 455554433210 123455555 46777776666778888876
Q ss_pred C
Q psy4754 232 L 232 (304)
Q Consensus 232 ~ 232 (304)
.
T Consensus 312 ~ 312 (322)
T 2fp8_A 312 D 312 (322)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00025 Score=65.58 Aligned_cols=272 Identities=13% Similarity=0.019 Sum_probs=155.1
Q ss_pred CceeEEeec-cccceEeeeeccccc--c------c-eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcC-
Q psy4754 3 KNHCRLFDL-RADKEVACYKKDSIL--F------G-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHEN- 69 (304)
Q Consensus 3 ~~~v~~wd~-~~~~~~~~~~~~~~~--~------~-i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~- 69 (304)
+++|.-+|. .+++++=........ . . ...++. .+..++.++.|+.+..+|..+|+.+-... .+..
T Consensus 72 ~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~ 149 (571)
T 2ad6_A 72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG 149 (571)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT
T ss_pred CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc
Confidence 466888898 888876333322110 0 0 011222 25567778889999999999987654332 1110
Q ss_pred -cEEE-EEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEEeccceee--------------------------
Q psy4754 70 -RVSC-LQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACYKKDSILF-------------------------- 115 (304)
Q Consensus 70 -~V~~-l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~~~-------------------------- 115 (304)
.+.+ ..+. ++ .++.++. ++.+ ..+|..+++.+..+.......
T Consensus 150 ~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v--~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~ 225 (571)
T 2ad6_A 150 STLTQAPFVA-KD-TVLMGCSGAELGVRGAV--NAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWE 225 (571)
T ss_dssp CBCCSCCEEE-TT-EEEEECBCGGGTCCCEE--EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSS
T ss_pred ceeccCCEEE-CC-EEEEEecCCccCCCCEE--EEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCc
Confidence 1211 1111 34 4444443 5664 678999888887765422110
Q ss_pred -------c---eeeeEEcCCCCEEEEEeCC----------------CeEEEecCCccccceecc--Ccc-------ccee
Q psy4754 116 -------G---ATSVDFSVSGRLLFAGYND----------------YTINVWDSLKCCRVNHLM--GHE-------NRVS 160 (304)
Q Consensus 116 -------~---~~~~~~s~~~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~--~h~-------~~v~ 160 (304)
+ ...+++.++...++.+..+ +.|..+|..+++.+=++. .|. ....
T Consensus 226 ~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~ 305 (571)
T 2ad6_A 226 GDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV 305 (571)
T ss_dssp TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE
T ss_pred ccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE
Confidence 0 0124566666677776532 358899988877653332 121 1111
Q ss_pred EEEEcCCCc---EEEEeecCCceEEEEeeecCCceEEEeecCc-ee----------eee---------------------
Q psy4754 161 CLQVSPDGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDS-IL----------FGA--------------------- 205 (304)
Q Consensus 161 ~v~~sp~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~----------~~~--------------------- 205 (304)
-+...++|+ .++.++.++.+ ..+|.++++.+-..+... .. .++
T Consensus 306 l~~~~~~G~~~~~v~~~~~~G~l--~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~ 383 (571)
T 2ad6_A 306 LTDQPVNGKMTPLLSHIDRNGIL--YTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAM 383 (571)
T ss_dssp EEEEEETTEEEEEEEEECTTSEE--EEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTT
T ss_pred EEecccCCcEEEEEEEeCCCcEE--EEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCc
Confidence 123334674 56677778874 578888877654443211 00 000
Q ss_pred -----eEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEeCCCceeeEEeecc
Q psy4754 206 -----TSVDFSVSGRLLFAGY-------------------------------------NDYTINVWDSLKCCRVNHLMGH 243 (304)
Q Consensus 206 -----~~~~~s~~g~~l~sg~-------------------------------------~d~~i~iwd~~~~~~~~~~~~h 243 (304)
..++++|+..++.... .++.+..||..+++.+-++..
T Consensus 384 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~- 462 (571)
T 2ad6_A 384 GFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE- 462 (571)
T ss_dssp CSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-
T ss_pred cccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-
Confidence 2356788877666543 347899999999988776643
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
..++.+..+...+..+..++.|+.|+.+|.+.+.....++
T Consensus 463 ~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 463 KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 2333333344445666678999999999887665444333
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0023 Score=61.45 Aligned_cols=255 Identities=11% Similarity=0.099 Sum_probs=149.6
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-------CcCcEEEEEEC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-------HENRVSCLQVS 77 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-------h~~~V~~l~~s 77 (304)
-+..||..+++...... ......|.++...++|.+.+. ..++.+..||..+++....... ....|.++...
T Consensus 194 Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 271 (795)
T 4a2l_A 194 GLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD 271 (795)
T ss_dssp CEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC
T ss_pred CEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc
Confidence 46667776665432211 111234788888777776654 4444588999877653322111 24679999998
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc------eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
++|++.+.. .+| +..+|........ +.... ....+.++...++|. +-.|+.++.|..|+..+.. +..
T Consensus 272 ~~g~lWigt-~~G---l~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~ 344 (795)
T 4a2l_A 272 SQNRLWIGT-FND---LNIYHEGTDSFAS-YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR-FKN 344 (795)
T ss_dssp TTSCEEEEE-SSC---EEEEETTTTEEEE-ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS-SEE
T ss_pred CCCCEEEEe-CCh---hheEcCCCCeEEE-EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc-ceE
Confidence 888766543 344 3578876554332 22110 012356777777776 4457777888898854432 111
Q ss_pred cc-------CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-------ceeeeeeEEEEcCCCCEE
Q psy4754 152 LM-------GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-------SILFGATSVDFSVSGRLL 217 (304)
Q Consensus 152 ~~-------~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~s~~g~~l 217 (304)
+. -....|.++...++|++.+ |+.++-+ ..|+..+.+.. .+... -....+.++...++|++|
T Consensus 345 ~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl--~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 345 IRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGL--NLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp ECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCE--EEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEE
T ss_pred EcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCe--EEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEE
Confidence 11 1234689999988887554 5555443 57777654332 22111 011346788888889856
Q ss_pred EEEeCCCcEEEEeCCCceeeEEee-----ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 218 FAGYNDYTINVWDSLKCCRVNHLM-----GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 218 ~sg~~d~~i~iwd~~~~~~~~~~~-----~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
..|..++-+..||..+++. ..+. .+...|.++...++|...+.. .+ .+..++...
T Consensus 421 Wigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp EEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred EEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 6677777899999876543 3332 134679999999888866554 34 455555443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00034 Score=65.00 Aligned_cols=274 Identities=12% Similarity=0.057 Sum_probs=153.7
Q ss_pred CceeEEeec-cccceEeeeecccccc---------ceeEEEEcCCCCE----EEEeeCCCcEEEEeCCCceeeeeecCCc
Q psy4754 3 KNHCRLFDL-RADKEVACYKKDSILF---------GATSVDFSVSGRL----LFAGYNDYTINVWDSLKCCRVNHLMGHE 68 (304)
Q Consensus 3 ~~~v~~wd~-~~~~~~~~~~~~~~~~---------~i~~~~~~~~g~~----l~tg~~dg~v~iwd~~~~~~~~~~~~h~ 68 (304)
+++|.-+|. .+++++=.+....... ....++++|.+.. ++.++.|+.+.-+|..+|+.+=......
T Consensus 72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~ 151 (599)
T 1w6s_A 72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD 151 (599)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCC
Confidence 467888899 8888763333221110 0123455443333 7778889999999999987653322111
Q ss_pred ----CcEEE-EEECCCCCeEEEEe------CCCceEEEEeeeCCCeeEeEEeccceeec---------------------
Q psy4754 69 ----NRVSC-LQVSPDGTAFSSGS------WDTTLRCRLFDLRADKEVACYKKDSILFG--------------------- 116 (304)
Q Consensus 69 ----~~V~~-l~~s~d~~~l~sgs------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~--------------------- 116 (304)
..+.+ -.+. ++ .++.++ .++.+ +-+|..+++.+..+........
T Consensus 152 ~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v--~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~ 227 (599)
T 1w6s_A 152 IKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYL--TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGT 227 (599)
T ss_dssp GGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEE--EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHH
T ss_pred CCccceeecCCEEE-CC-EEEEEecccccCCCCeE--EEEECCCCcEEEEEcCCCCcccccccccccccccccccccccc
Confidence 01211 1111 34 444443 36664 6789998888877654321100
Q ss_pred ---------------eeeeEEcCCCCEEEEEeCC----------------CeEEEecCCccccceecc--Cccc------
Q psy4754 117 ---------------ATSVDFSVSGRLLFAGYND----------------YTINVWDSLKCCRVNHLM--GHEN------ 157 (304)
Q Consensus 117 ---------------~~~~~~s~~~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~--~h~~------ 157 (304)
-...++.++...++.+..+ +.|..+|..+++.+=++. .|..
T Consensus 228 ~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~ 307 (599)
T 1w6s_A 228 GTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGV 307 (599)
T ss_dssp HTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCC
T ss_pred ccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCC
Confidence 0123556677788877654 378899988877653332 2211
Q ss_pred -ceeEEEEc-CCC---cEEEEeecCCceEEEEeeecCCceEEEeecCc-------------ee-----------------
Q psy4754 158 -RVSCLQVS-PDG---TAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-------------IL----------------- 202 (304)
Q Consensus 158 -~v~~v~~s-p~~---~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-------------~~----------------- 202 (304)
...-+... .+| ..++.++.++.+ ..+|.++++.+-..+... ..
T Consensus 308 ~~p~l~d~~~~~G~~~~~v~~~~~~G~l--~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~ 385 (599)
T 1w6s_A 308 NVMMLSEQKDKDGKARKLLTHPDRNGIV--YTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDI 385 (599)
T ss_dssp CCCEEEEEECTTSCEEEEEEEECTTSEE--EEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEE
T ss_pred CccEEEeccccCCcEEEEEEEECCCcEE--EEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEe
Confidence 11112232 467 467778888875 578888877654433110 00
Q ss_pred -------eeeeEEEEcCCCCEEEEEe---------------------------------------CCCcEEEEeCCCcee
Q psy4754 203 -------FGATSVDFSVSGRLLFAGY---------------------------------------NDYTINVWDSLKCCR 236 (304)
Q Consensus 203 -------~~~~~~~~s~~g~~l~sg~---------------------------------------~d~~i~iwd~~~~~~ 236 (304)
..-..++++|+..++.+.. ..+.+.-||+.+++.
T Consensus 386 ~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~ 465 (599)
T 1w6s_A 386 CPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY 465 (599)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE
T ss_pred ccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCE
Confidence 0001345666655554421 346788899999887
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
+-+... ..+...-.+...+..+..++.|+.++.+|.+.+.....++
T Consensus 466 ~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 466 KWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 765532 2222221233345666678999999999887766444443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0012 Score=57.02 Aligned_cols=235 Identities=10% Similarity=0.027 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.+|.+..++ .+|+-+ ....|+..++........+. .......++|.+..+.| .+-...+.| ..+++........
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I--~r~~~~g~~~~~~ 110 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRI--LRANLNGSNVEEV 110 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEE--EEEETTSCSCEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCce--EEEecCCCCceEE
Confidence 455555554 344333 34468888876544333232 23457889999765544 454445553 5567664432222
Q ss_pred EeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
.... ......+++.+.+..++.. ...+.|.+.++..................++++|.+..+........-+|..++
T Consensus 111 ~~~~--~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 111 VSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp ECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EeCC--CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 2111 1123568888766666555 446889998875432222222333567899999965544433333212245666
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
+.......... .. ....+.++++|++..| ++-...+.|..+|.........+.........|++ .++..+.+-...
T Consensus 189 ~dG~~~~~~~~-~~-~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 265 (349)
T 3v64_C 189 MDGSGRRIIAD-TH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 265 (349)
T ss_dssp TTSCSCEESCC-SS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred CCCCCcEEEEE-CC-CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence 65433222111 11 2246889999866554 44445678999987643222223333456678888 456777777777
Q ss_pred Ceeeeccc
Q psy4754 266 TTLRDEES 273 (304)
Q Consensus 266 ~~i~~~~~ 273 (304)
+.|.-.+.
T Consensus 266 ~~V~~~~~ 273 (349)
T 3v64_C 266 KSINSANK 273 (349)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEc
Confidence 77776653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00085 Score=55.17 Aligned_cols=202 Identities=11% Similarity=0.089 Sum_probs=117.0
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEe
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iw 141 (304)
.+.+-.+.+..+++.|+++.|++.+. ++. +...|.. ++.++.+..... ...-.+++.+++.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~--I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAA--IVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEE--EEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCe--EEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 34455567999999998777766543 444 4556766 555555543211 123467777888766665567788888
Q ss_pred cCCcccc---ceec------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeec-CCceEEEeec-----Cceeeeee
Q psy4754 142 DSLKCCR---VNHL------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADKEVACYKK-----DSILFGAT 206 (304)
Q Consensus 142 d~~~~~~---~~~~------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~-~~~~~~~~~~-----~~~~~~~~ 206 (304)
++..... +... ...+.....|+++|+++.|.++.......++.|+-. ....+..... ........
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 7544321 1111 112344689999999877666665544433444410 1111221111 11123457
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEeCCCceeeEEeeccc---------cceEEEEEccCCCEEEEeecCCeeee
Q psy4754 207 SVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHE---------NRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 207 ~~~~s~~g~-~l~sg~~d~~i~iwd~~~~~~~~~~~~h~---------~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
+++++|... +++.....+.+.++|.. ++.+..+.-.. ..--.|+|.|+|+.+++ |+-..+..
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR 248 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence 899998754 55556666778889865 44444433221 25688999999997777 55444433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00023 Score=66.19 Aligned_cols=254 Identities=12% Similarity=-0.012 Sum_probs=140.8
Q ss_pred CCceeEEeeccccceEeeeecccc--ccceeE-EEEcCCCCEEEEee------CCCcEEEEeCCCceeeeeecCCcC---
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI--LFGATS-VDFSVSGRLLFAGY------NDYTINVWDSLKCCRVNHLMGHEN--- 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~--~~~i~~-~~~~~~g~~l~tg~------~dg~v~iwd~~~~~~~~~~~~h~~--- 69 (304)
.|+++.-+|..+++++-....... ...+++ -.. .++. ++.++ .+|.|+-+|..+|+.+=.+.....
T Consensus 129 ~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~ 206 (599)
T 1w6s_A 129 LDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKD 206 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred CCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccc
Confidence 367788889999988644332221 112221 111 1444 44444 389999999999876533221100
Q ss_pred ----------------------------------cEE-EEEECCCCCeEEEEeCCCc--------------eEEEEeeeC
Q psy4754 70 ----------------------------------RVS-CLQVSPDGTAFSSGSWDTT--------------LRCRLFDLR 100 (304)
Q Consensus 70 ----------------------------------~V~-~l~~s~d~~~l~sgs~D~~--------------i~~~~wd~~ 100 (304)
.++ ..++.++...++.+..+.. -.+.-+|..
T Consensus 207 ~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~ 286 (599)
T 1w6s_A 207 LLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD 286 (599)
T ss_dssp HTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred cccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence 011 2345566666666654431 124678888
Q ss_pred CCeeEeEEecccee-------eceeeeEEc-CCC---CEEEEEeCCCeEEEecCCccccceeccCc------------c-
Q psy4754 101 ADKEVACYKKDSIL-------FGATSVDFS-VSG---RLLFAGYNDYTINVWDSLKCCRVNHLMGH------------E- 156 (304)
Q Consensus 101 ~~~~~~~~~~~~~~-------~~~~~~~~s-~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~h------------~- 156 (304)
+++....++..... ....-+... .++ ..++.++.+|.+.+.|..+++.+-...-. .
T Consensus 287 TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g 366 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTG 366 (599)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTC
T ss_pred CCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCC
Confidence 88888777643210 000112222 456 46777889999999998887765332110 0
Q ss_pred cce--------------------------eEEEEcCCCcEEEEeec----------------------------------
Q psy4754 157 NRV--------------------------SCLQVSPDGTAFSSGSW---------------------------------- 176 (304)
Q Consensus 157 ~~v--------------------------~~v~~sp~~~~las~s~---------------------------------- 176 (304)
.++ ..++++|+..++.....
T Consensus 367 ~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~ 446 (599)
T 1w6s_A 367 QPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDR 446 (599)
T ss_dssp CEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBT
T ss_pred ceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCc
Confidence 011 23567777666554322
Q ss_pred -----CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEE
Q psy4754 177 -----DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCL 250 (304)
Q Consensus 177 -----d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l 250 (304)
++. +.-||+.+++.+=..+... +...-.+...+.+++.++.|+.++.||..+++++-++....+ ...-+
T Consensus 447 ~~~~~~G~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~ 521 (599)
T 1w6s_A 447 QNYEGLGQ--IKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM 521 (599)
T ss_dssp TTTBCCEE--EEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred ccCCCcCe--EEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccE
Confidence 122 3456666665433222111 111111223577788899999999999999999988764332 22346
Q ss_pred EEccCCCEEEEe
Q psy4754 251 QVSPDGTAFSSG 262 (304)
Q Consensus 251 ~~sp~g~~lasg 262 (304)
.|..+|+.++..
T Consensus 522 ~y~~~G~qyv~~ 533 (599)
T 1w6s_A 522 TYTHKGTQYVAI 533 (599)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEeCCEEEEEE
Confidence 677788755443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.7e-05 Score=71.04 Aligned_cols=197 Identities=12% Similarity=0.026 Sum_probs=107.6
Q ss_pred cEEEEEEC-CCCCeEEEEeC-CCc--eEEEEeeeCCC-eeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEE
Q psy4754 70 RVSCLQVS-PDGTAFSSGSW-DTT--LRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTIN 139 (304)
Q Consensus 70 ~V~~l~~s-~d~~~l~sgs~-D~~--i~~~~wd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~ 139 (304)
.+...+|| |||++|+-+.. ++. ..++++|+.++ +.+.. ........+.|+||++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~----~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD----KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC----CEEEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc----cccCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67889999 99997774332 222 23688999877 53210 001112467899999887776554 3688
Q ss_pred EecCCccccc--eecc-CcccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCc-eE--EEeecCceeeeeeEEEEcC
Q psy4754 140 VWDSLKCCRV--NHLM-GHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADK-EV--ACYKKDSILFGATSVDFSV 212 (304)
Q Consensus 140 iwd~~~~~~~--~~~~-~h~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~-~~--~~~~~~~~~~~~~~~~~s~ 212 (304)
++++.+.+.. ..+. ........+.++|||+.|+..+.+ ..-.++++|+.++. .. ..+.... .....++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeee
Confidence 8888765422 1111 222345678999999987755532 23345778887642 11 2221111 11223444444
Q ss_pred CCCEEEEEeCC--C--cEEEEeCCCceeeEE-eecccc--ceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 213 SGRLLFAGYND--Y--TINVWDSLKCCRVNH-LMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 213 ~g~~l~sg~~d--~--~i~iwd~~~~~~~~~-~~~h~~--~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
++.+++....+ + .|..++..++..... +..|.. .+..+.+. .+..+++...|+..+++-
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 44455555443 3 455566654212222 333443 34555554 234556777788766653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0015 Score=55.71 Aligned_cols=228 Identities=13% Similarity=0.031 Sum_probs=128.6
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeee-ecCCcCcEEEEEECCC-C
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPD-G 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d-~ 80 (304)
..|+..|+.+.......... ......+++|.+. +.++.+-...+.|..+++........ +...-.....+++.+. +
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 46888898876411111111 1123678999885 55666777788999999876532111 1112234557888764 4
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceec-cCccc
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHL-MGHEN 157 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~-~~h~~ 157 (304)
+++++-...+. +.+.++........... .......+++.|.+..++.... .+.|...++.... ...+ ...-.
T Consensus 92 ~ly~~d~~~~~--I~~~~~dG~~~~~l~~~--~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~ 166 (318)
T 3sov_A 92 KLYWTDSETNR--IEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIY 166 (318)
T ss_dssp EEEEEETTTTE--EEEEETTSCSCEEEECS--SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCS
T ss_pred eEEEEECCCCE--EEEEECCCCcEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCC
Confidence 45555444555 35677654322222211 1223467888887777777653 5788888765322 2222 12234
Q ss_pred ceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 158 RVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
....|+++|++..+..+. ..+. |..+|+.......... .. ...+..+++. .+.++.+-...+.|..++..+++.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~--I~~~d~dG~~~~~~~~-~~-~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGTNRQAVVK-GS-LPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEEC-SC-CSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CccEEEEeccCCEEEEEECCCCE--EEEEcCCCCceEEEec-CC-CCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 568999999766555443 3444 4577776433322222 11 1234566664 345666666678899999877766
Q ss_pred eEEeec
Q psy4754 237 VNHLMG 242 (304)
Q Consensus 237 ~~~~~~ 242 (304)
...+..
T Consensus 242 ~~~i~~ 247 (318)
T 3sov_A 242 LREIHS 247 (318)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 555544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0028 Score=60.77 Aligned_cols=227 Identities=10% Similarity=-0.006 Sum_probs=125.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEECCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~d 79 (304)
.||..++...+...... ....+.+++|.+. +.++++-...+.|+.+++... .....+.........|++.+.
T Consensus 405 ~Ir~i~l~~~~~~~l~~---~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp SEEEECTTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ceeEeeccCCcceeeec---CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 45666665543322111 1233678999885 456667667788999988642 222222223345567888876
Q ss_pred CC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCcc
Q psy4754 80 GT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 80 ~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
++ ++++-...+. |.+.++........+... ......+++.|.+.+|+.... .+.|.+.++........+...-
T Consensus 482 ~~~LY~tD~~~~~--I~v~~ldG~~~~~l~~~~--l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l 557 (791)
T 3m0c_C 482 HSNIYWTDSVLGT--VSVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 557 (791)
T ss_dssp TTEEEEEETTTTE--EEEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred CCcEEEEecCCCe--EEEEeCCCCeEEEEEeCC--CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence 65 4445444555 466777644332222211 123568899998777777653 2678888875433222222333
Q ss_pred cceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 157 NRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
.....|++++.+..|+.+-. .+. |+.+++...................++++.. +.++++-...+.|...+..++.
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~--I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEecCCCeEEEEeCCCCc--EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 56889999976665555443 334 4677776544433333221112334666533 3555555566778888876665
Q ss_pred eeEEee
Q psy4754 236 RVNHLM 241 (304)
Q Consensus 236 ~~~~~~ 241 (304)
.+..+.
T Consensus 635 ~~~~l~ 640 (791)
T 3m0c_C 635 DVNLLA 640 (791)
T ss_dssp CCEEEE
T ss_pred ceEEee
Confidence 555554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=75.90 Aligned_cols=240 Identities=9% Similarity=-0.021 Sum_probs=128.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCE-EEEeeCCCcEEEEeCCC----ceeeeeecCCcCcEEEEEECC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~-l~tg~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~l~~s~ 78 (304)
..|+..++.+.+...... ....+.+++|.+.+.. +++-...+.|+.+++.. ......+.........|++.+
T Consensus 386 ~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred cceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 457777777665432221 1223678899986554 44555678999999865 222221211112345677775
Q ss_pred C-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCc
Q psy4754 79 D-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 79 d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h 155 (304)
. ++++++-...+.| .+.++........+... ......+++.|.+.+|+.... .+.|.+.++............
T Consensus 463 ~~g~LY~tD~~~~~I--~v~d~dg~~~~~l~~~~--~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTV--SVADTKGVKRKTLFREQ--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp SSSBCEECCTTTSCE--EEEBSSSCCEEEECCCS--SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred eCCcEEEEeccCCeE--EEEecCCCceEEEEeCC--CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence 4 4555554445554 56776543322222211 123467888887666666543 267888776432211111122
Q ss_pred ccceeEEEEcCCCcEE-EEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 156 ENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~l-as~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
-.....|+++|++..| .+-+..+. |..+++....................+++..+ .++++....+.|..++..++
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~--I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTE--EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCccEEEEeccCCEEEEEecCCCe--EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 2456789999876544 44444445 45777764333222221111122345555444 55566666788999998888
Q ss_pred eeeEEeeccccceEEEEEc
Q psy4754 235 CRVNHLMGHENRVSCLQVS 253 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~s 253 (304)
+.+..+.......+.|++.
T Consensus 616 ~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 616 SDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EEEECCCTTCSSCCCCCBC
T ss_pred CceEEeecCCCCCcEEEEe
Confidence 7776665433344555444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0042 Score=59.64 Aligned_cols=252 Identities=12% Similarity=0.108 Sum_probs=149.9
Q ss_pred eEEeeccccceEeeeec-----cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee--eec----CCcCcEEEE
Q psy4754 6 CRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLM----GHENRVSCL 74 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~--~~~----~h~~~V~~l 74 (304)
+.+||..+++....... ......|.++...++|.+- .|+.++-|..|+..+..... ... .....|.++
T Consensus 284 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i 362 (795)
T 4a2l_A 284 LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCI 362 (795)
T ss_dssp EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEE
T ss_pred hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEE
Confidence 66777776654322111 1122348899988888755 56677789999876543221 110 124579999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-------eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 147 (304)
...++|++.+ |..++-+ ..||..+.+... +.... ....+.++...+++..+..|+.++.+..||..+++
T Consensus 363 ~~d~~g~lWi-Gt~~~Gl--~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 363 VEDKDKNLWI-GTNDGGL--NLYNPITQRFTS-YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EECTTSCEEE-EESSSCE--EEECTTTCCEEE-ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred EECCCCCEEE-EECCCCe--EEEcCCCCcEEE-EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 9888887555 5555443 567766543322 21110 01235566677777746667777889999976543
Q ss_pred cceecc-----CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC----c-eeeeeeEEEEcCCCCEE
Q psy4754 148 RVNHLM-----GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD----S-ILFGATSVDFSVSGRLL 217 (304)
Q Consensus 148 ~~~~~~-----~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~----~-~~~~~~~~~~s~~g~~l 217 (304)
. ..+. .....|.++...+++++.+.. .++ +..||..+.+.. .+... . ....+.++...++|.+.
T Consensus 439 ~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G---l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 439 V-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA---LVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp E-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC---EEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred E-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc---eeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEE
Confidence 2 2221 134578999998888765543 344 357887665432 22211 1 11346788888999877
Q ss_pred EEEeCCCcEEEEeCCCceeeEEee-------ccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 218 FAGYNDYTINVWDSLKCCRVNHLM-------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 218 ~sg~~d~~i~iwd~~~~~~~~~~~-------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+... +-+..||..+... .+. .+...|.++...++|...++.. + -|..++..
T Consensus 513 igt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~ 570 (795)
T 4a2l_A 513 IGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEK 570 (795)
T ss_dssp EEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETT
T ss_pred EEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCC
Confidence 6554 4688888766544 222 1345799999999998666543 3 45555543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0024 Score=59.21 Aligned_cols=271 Identities=13% Similarity=0.040 Sum_probs=151.5
Q ss_pred eeEEeeccccceEeeeeccccccc-------eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc--C--cEE-
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFG-------ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE--N--RVS- 72 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~-------i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~--~--~V~- 72 (304)
.|.-+|..+++++=.+........ ...++. .+..++.++.|+.+.-+|..+|+.+=...... . .+.
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~ 156 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTG 156 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCS
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCccccc
Confidence 477889999988644333221100 011222 24567778899999999999997654332211 0 111
Q ss_pred EEEECC---CCC-eEEEEeC------CCceEEEEeeeCCCeeEeEEeccceee---------------------------
Q psy4754 73 CLQVSP---DGT-AFSSGSW------DTTLRCRLFDLRADKEVACYKKDSILF--------------------------- 115 (304)
Q Consensus 73 ~l~~s~---d~~-~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~~~--------------------------- 115 (304)
.-.+.. +++ .++.++. ++.+ .-+|..+++.+..........
T Consensus 157 sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v--~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~ 234 (582)
T 1flg_A 157 APTIVKDGKTGKVLLIHGSSGDEFGVVGRL--FARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPT 234 (582)
T ss_dssp CCEEEECTTTCCEEEEECCBCGGGCCBCEE--EEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTT
T ss_pred CCEEeCCCcCCcEEEEEeccccccCCCCEE--EEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccc
Confidence 111111 233 5555542 5553 567888777776554311000
Q ss_pred ---------c---eeeeEEcCCCCEEEEEeC--------------------C----CeEEEecCCccccceecc--Ccc-
Q psy4754 116 ---------G---ATSVDFSVSGRLLFAGYN--------------------D----YTINVWDSLKCCRVNHLM--GHE- 156 (304)
Q Consensus 116 ---------~---~~~~~~s~~~~~l~sg~~--------------------d----g~i~iwd~~~~~~~~~~~--~h~- 156 (304)
+ -...++.++...++.+.. | +.|..+|..+++.+=++. .|.
T Consensus 235 g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~ 314 (582)
T 1flg_A 235 GKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDA 314 (582)
T ss_dssp SBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCC
T ss_pred ccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCc
Confidence 0 013456677777877663 2 589999998887654432 221
Q ss_pred -------cceeEEEEc-CCCc---EEEEeecCCceEEEEeeecCCceEEEeecCcee-----------------------
Q psy4754 157 -------NRVSCLQVS-PDGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL----------------------- 202 (304)
Q Consensus 157 -------~~v~~v~~s-p~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~----------------------- 202 (304)
.++ -+... .+|+ .++.++.++.+ +.+|.++++.+-.+......
T Consensus 315 wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l--~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 391 (582)
T 1flg_A 315 WDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFF--YVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPL 391 (582)
T ss_dssp SCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEE--EEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCC
T ss_pred ccccCCCCcE-EEeeecCCCCEEEEEEEECCCceE--EEEECCCCCEecccccccCccccccccccCCCEeEccccCCcc
Confidence 122 12222 4664 67788888885 57888887765443322100
Q ss_pred -------------ee-------eeEEEEcCCCCEEEEEe---------------------------------CCCcEEEE
Q psy4754 203 -------------FG-------ATSVDFSVSGRLLFAGY---------------------------------NDYTINVW 229 (304)
Q Consensus 203 -------------~~-------~~~~~~s~~g~~l~sg~---------------------------------~d~~i~iw 229 (304)
.+ -..++++|+..++.+.. .++.+.-|
T Consensus 392 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~ 471 (582)
T 1flg_A 392 PEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAM 471 (582)
T ss_dssp CCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEE
T ss_pred ccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEE
Confidence 00 01345666655444422 25789999
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
|..+++.+-+...+ .++..-.+...+..+..|+.|+.++.+|.+.+.....++
T Consensus 472 D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 472 DPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 99999887665432 232222223345667779999999999987766444444
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0014 Score=60.81 Aligned_cols=262 Identities=15% Similarity=0.028 Sum_probs=145.6
Q ss_pred CceeEEeeccccceEeeeeccccc--ccee---EEEEc-CCCC-EEEEee------CCCcEEEEeCCCceeeeeecCCc-
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSIL--FGAT---SVDFS-VSGR-LLFAGY------NDYTINVWDSLKCCRVNHLMGHE- 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~--~~i~---~~~~~-~~g~-~l~tg~------~dg~v~iwd~~~~~~~~~~~~h~- 68 (304)
++++.-+|..+++++=..+..... ..+. .+.=. .+|+ .++.++ .+|.|.-+|..+|+.+=......
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~ 205 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG 205 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT
T ss_pred CCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcc
Confidence 577888999999886444332211 1111 12111 1233 566654 37899999998886542221100
Q ss_pred ---------------------------------------CcE-EEEEECCCCCeEEEEeC--------------------
Q psy4754 69 ---------------------------------------NRV-SCLQVSPDGTAFSSGSW-------------------- 88 (304)
Q Consensus 69 ---------------------------------------~~V-~~l~~s~d~~~l~sgs~-------------------- 88 (304)
..+ ...++.|+...++.+..
T Consensus 206 ~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~ 285 (582)
T 1flg_A 206 HMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDY 285 (582)
T ss_dssp CEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTC
T ss_pred ccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCccccc
Confidence 000 12455566666665542
Q ss_pred C----CceEEEEeeeCCCeeEeEEecccee---e-ce-eeeEEc---CCCC---EEEEEeCCCeEEEecCCccccceecc
Q psy4754 89 D----TTLRCRLFDLRADKEVACYKKDSIL---F-GA-TSVDFS---VSGR---LLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 89 D----~~i~~~~wd~~~~~~~~~~~~~~~~---~-~~-~~~~~s---~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
| +. +.-+|..+++....++..... + .. ..+.+. .+++ .++.++.+|.+.++|..+++.+-.+.
T Consensus 286 d~~~~~~--v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 286 DSLYTSG--QVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp CCTTCSE--EEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccce--EEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 2 34 467888899888877642110 0 00 112222 4563 67888999999999988876553321
Q ss_pred Ccc------------c-c--------------------------------eeEEEEcCCCcEEEEeec------------
Q psy4754 154 GHE------------N-R--------------------------------VSCLQVSPDGTAFSSGSW------------ 176 (304)
Q Consensus 154 ~h~------------~-~--------------------------------v~~v~~sp~~~~las~s~------------ 176 (304)
... . + -..++++|+...+.....
T Consensus 364 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 443 (582)
T 1flg_A 364 FVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS 443 (582)
T ss_dssp SSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCC
T ss_pred cccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccc
Confidence 110 0 0 013466776555544332
Q ss_pred ---------------------CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 177 ---------------------DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 177 ---------------------d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
++. +.-||+.+++.+=...... +...-.....+.+++.|+.|+.++.||..+++
T Consensus 444 ~~~g~~~~g~~~~~~p~~~~~~G~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 444 YTKGSAYLGMGFRIKRMYDDHVGS--LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp CCTTSCCCCEEEEEEESCSSCSEE--EEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCCCceeccceeecCCCCCCcce--EEEEECCCCCEEEEecCCC---CCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 233 3567877776543332221 11111122346788889999999999999999
Q ss_pred eeEEeeccccce-EEEEEccCCCEEEEeec--CCeeeec
Q psy4754 236 RVNHLMGHENRV-SCLQVSPDGTAFSSGSW--DTTLRDE 271 (304)
Q Consensus 236 ~~~~~~~h~~~i-~~l~~sp~g~~lasgs~--D~~i~~~ 271 (304)
++-++....+.+ .-+.|..+|+.++.... .+.+-+|
T Consensus 519 ~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 519 ELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHH
T ss_pred EEEEecCCCCcccCceEEEECCEEEEEEEccCCCccccc
Confidence 998887543221 23677788875554332 2444455
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0028 Score=53.39 Aligned_cols=210 Identities=10% Similarity=0.079 Sum_probs=113.7
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeeec-CCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLM-GHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~ 78 (304)
..++|..||..++. ...+.. ......+++.++|+++++..... .|..++..+++...... .....-..++..+
T Consensus 51 ~~~~I~~~d~~g~~-~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~ 126 (306)
T 2p4o_A 51 EVGEIVSITPDGNQ-QIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS 126 (306)
T ss_dssp TTTEEEEECTTCCE-EEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS
T ss_pred CCCeEEEECCCCce-EEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC
Confidence 45678888877642 222222 22478899999999776654332 46667777765432211 1112233455566
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCe-eEeEEec-------cceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCc-ccc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADK-EVACYKK-------DSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLK-CCR 148 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~-~~~~~~~-------~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~-~~~ 148 (304)
++..+++-..++. ++.+|....+ .+..... .......+.+ +++++.++.+. ..+.|..+|... +..
T Consensus 127 ~~~~~v~d~~~g~--i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~ 202 (306)
T 2p4o_A 127 DTQYLTADSYRGA--IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP 202 (306)
T ss_dssp SSEEEEEETTTTE--EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB
T ss_pred CCcEEEEECCCCe--EEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC
Confidence 6655665544555 3566655432 1111110 0111122344 78887776654 468999998754 211
Q ss_pred --ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc---CCCCEEEEEeCC
Q psy4754 149 --VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS---VSGRLLFAGYND 223 (304)
Q Consensus 149 --~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s---~~g~~l~sg~~d 223 (304)
...+. .......++++++|+++++....+.| ..+|.. ++.............+++++|. |++..|......
T Consensus 203 ~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V--~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 203 GEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSV--VRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCE--EEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeE--EEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 11111 11346778999999887776666665 567764 3332211111111346889998 887766665543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.003 Score=51.90 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=121.2
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 27 FGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 27 ~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
..+..+++.|++. +++....++.|...|.. ++.++.+.- -..-...|++.+++.++++.-.+.. +.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~--l~~~~v~~~~~ 103 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA--IYVISLTPNSE 103 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE--EEEEEECTTCC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc--EEEEEcCCCCe
Confidence 3589999999765 55567788999999997 777766531 1244678888888877776544555 35677655443
Q ss_pred E---eEEec----cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC---ccccceec-------cCcccceeEEEEcCC
Q psy4754 105 V---ACYKK----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---KCCRVNHL-------MGHENRVSCLQVSPD 167 (304)
Q Consensus 105 ~---~~~~~----~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~---~~~~~~~~-------~~h~~~v~~v~~sp~ 167 (304)
+ ...+. .....+.-.++++|.++.|+++.......+|... ....+... ..+...+.+++++|.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 2 22211 0111234588999998888777665555555432 11111111 112345789999998
Q ss_pred CcEEEEeecCCceEEEEeeecCCceEEEeecCc-------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 168 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-------ILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 168 ~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
...+..-|.++.. +..+|... +.+..+.... .......++|.++|+++++ ++.+-++.|.
T Consensus 184 tg~lliLS~~s~~-L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 184 KNTLLVLSHESRA-LQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TTEEEEEETTTTE-EEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CCeEEEEECCCCe-EEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 7777766766654 45677654 4444443221 1124678999999997777 4455555553
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00016 Score=64.53 Aligned_cols=153 Identities=11% Similarity=0.051 Sum_probs=96.0
Q ss_pred eeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCce--EEEEeeecCCce
Q psy4754 117 ATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTL--RCRLFDLRADKE 192 (304)
Q Consensus 117 ~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i--~i~~~d~~~~~~ 192 (304)
...++++| ++..|+.+...+.|+.+|+.+.. +..+.........|+++++++.+..+.. ++.+ .+..++. .+..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 45788898 46667776666889999976543 3333334456889999999985554443 2221 1222332 2221
Q ss_pred E--EEeecCceeeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCceeeEEee-ccccceEEEEEccCCC-EEEEeecCCe
Q psy4754 193 V--ACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGT-AFSSGSWDTT 267 (304)
Q Consensus 193 ~--~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~-~lasgs~D~~ 267 (304)
. ..+.. ...+..++++| +|.++++-...+.|..++...+....... +.......|+|+|+|+ .+++-.....
T Consensus 217 ~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 217 KVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp CSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 1 12211 12356788999 78888777777899999987654322111 1224568899999999 6667677788
Q ss_pred eeecccc
Q psy4754 268 LRDEESK 274 (304)
Q Consensus 268 i~~~~~~ 274 (304)
|..++++
T Consensus 294 I~~~~~d 300 (430)
T 3tc9_A 294 ILRSDYD 300 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 8887654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.002 Score=57.39 Aligned_cols=218 Identities=10% Similarity=0.056 Sum_probs=116.3
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---Cc-EEEEeCCCcee-eeeecCCcCcEEEEEECC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YT-INVWDSLKCCR-VNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g~-v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~ 78 (304)
+.|+.+|+.+++...... .......++|+++|.++++-... .. +...+...+.. ...+. .-..-..+++.|
T Consensus 162 ~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~ 237 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHP 237 (433)
T ss_dssp SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECT
T ss_pred CCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeC
Confidence 468888888776543322 22347899999999955554321 11 33333221110 01111 122334678898
Q ss_pred -CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCC--cccc--ceec
Q psy4754 79 -DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSL--KCCR--VNHL 152 (304)
Q Consensus 79 -d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~--~~~~--~~~~ 152 (304)
+++++++-..++. ++.+|..++.....+...........++|+|++++|+.+. ..+.|..++.. +... ...+
T Consensus 238 ~~G~lyv~d~~~~~--V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 238 QNGKIYYTRYHHAM--ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp TTCCEEECBTTCSE--EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred CCCeEEEEECCCCE--EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence 6666666555554 4567766444312211111111123589999999666654 46889997643 2211 1111
Q ss_pred cC---------------cccceeEEEE---------cCCCcEEEEeecCCceEEEEeeecCCceEEEeecC---------
Q psy4754 153 MG---------------HENRVSCLQV---------SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD--------- 199 (304)
Q Consensus 153 ~~---------------h~~~v~~v~~---------sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~--------- 199 (304)
.+ .-.....+++ .+++.++++-...+.| +.++. .+.. ..+-..
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I--~~~~~-~G~v-~t~~G~g~~~~~G~~ 391 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV--RVLTP-EGRV-TTYAGRGNSREWGYV 391 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE--EEECT-TSEE-EEEECCCTTCSSCCB
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE--EEECC-CCCE-EEEEeCCCCCccccC
Confidence 11 1124667899 7777777665555554 56664 3332 222111
Q ss_pred -------ceeeeeeEEEEc-CCCCEEEEEeCCCcEEEEeC
Q psy4754 200 -------SILFGATSVDFS-VSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 200 -------~~~~~~~~~~~s-~~g~~l~sg~~d~~i~iwd~ 231 (304)
.....+..+++. ++|.++++=...+.|+.+++
T Consensus 392 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 392 DGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 012236788888 66777766555667777664
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0046 Score=52.98 Aligned_cols=197 Identities=8% Similarity=0.108 Sum_probs=114.9
Q ss_pred CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC----CCCe--EEEEeCCC--ceEEEEeeeC-CCeeEeEE
Q psy4754 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP----DGTA--FSSGSWDT--TLRCRLFDLR-ADKEVACY 108 (304)
Q Consensus 38 g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~----d~~~--l~sgs~D~--~i~~~~wd~~-~~~~~~~~ 108 (304)
..++++....+.+.+||+ +|+.+..+.. +.+..+...| .|+. |+.++.-. .-++.++++. ....+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 356666677889999999 7888877753 3444444444 2322 33333221 2335788773 22233333
Q ss_pred ec---c--ceeeceeeeEE--cCC-CC-EEEEEeCCCeEEEecCC-------ccccceeccCcccceeEEEEcCCCcEEE
Q psy4754 109 KK---D--SILFGATSVDF--SVS-GR-LLFAGYNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 109 ~~---~--~~~~~~~~~~~--s~~-~~-~l~sg~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~la 172 (304)
.. . .....+-.+++ ++. +. +++....+|.+..|++. +.+.++++.- ...+..+...+....|.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 11 0 00112223444 564 43 67778888999999873 3344555432 35788889998888888
Q ss_pred EeecCCceEEEEeeec-----CCceEEEeecCceeeeeeEEEE--cCCCC-EEEEEe-CCCcEEEEeCC-CceeeEEe
Q psy4754 173 SGSWDTTLRCRLFDLR-----ADKEVACYKKDSILFGATSVDF--SVSGR-LLFAGY-NDYTINVWDSL-KCCRVNHL 240 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~--s~~g~-~l~sg~-~d~~i~iwd~~-~~~~~~~~ 240 (304)
.+-.|.- ||.++.+ +.+.+..+........+..+++ .++++ +|++.+ .+.+..+||.. +.+.+..+
T Consensus 196 v~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred Eecccce--EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 8887754 5677755 2334444332322224566666 56666 666666 55689999986 55555555
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.015 Score=55.63 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=129.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee---cCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
.|.++...++|.+. .|..++-+..||..++....-. ......|.++...+++++.+ |..++-+ ..+|..+++.
T Consensus 364 ~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl--~~~~~~~~~~ 439 (781)
T 3v9f_A 364 VVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNI--SYYNTRLKKF 439 (781)
T ss_dssp CEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEE--EEECSSSCEE
T ss_pred ceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCE--EEEcCCCCcE
Confidence 38888888877755 5555667999998765432211 12346799999888777655 5544443 4567654432
Q ss_pred EeEEecc-ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC-----cccceeEEEEcCCCcEEEEeecCC
Q psy4754 105 VACYKKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-----HENRVSCLQVSPDGTAFSSGSWDT 178 (304)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~las~s~d~ 178 (304)
..+... .....+.++...+++. +..|+. +.+..+|..+.+....... ....|.++...++|++.+.....+
T Consensus 440 -~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 440 -QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp -EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred -EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence 222211 0112345666666665 445555 6788888665432111111 135789999999887655433344
Q ss_pred ceEEEEeeecCCceEEEeecCc--eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec----cccceEEEEE
Q psy4754 179 TLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----HENRVSCLQV 252 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~----h~~~i~~l~~ 252 (304)
+ ..+|..+.+ ...+.... ....+.++...++|.+.++.. +|-+..||..+++ ...+.. ....|.++..
T Consensus 517 -l--~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~ 590 (781)
T 3v9f_A 517 -V--GIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD-YQVFQRKEGLPNTHIRAISE 590 (781)
T ss_dssp -E--EEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC-CEEECGGGTCSCCCCCEEEE
T ss_pred -E--EEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc-EEEccccCCCCCceEEEEEE
Confidence 3 467766543 23332111 112467888888898766544 5554888876653 333322 1246889999
Q ss_pred ccCCCEEEEe
Q psy4754 253 SPDGTAFSSG 262 (304)
Q Consensus 253 sp~g~~lasg 262 (304)
.++|...+++
T Consensus 591 d~~g~lW~~t 600 (781)
T 3v9f_A 591 DKNGNIWAST 600 (781)
T ss_dssp CSSSCEEEEC
T ss_pred CCCCCEEEEc
Confidence 9998877765
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.004 Score=53.77 Aligned_cols=221 Identities=11% Similarity=0.126 Sum_probs=118.6
Q ss_pred cceeEEEEcCCCCEEEEee------------CCCcEEEEeCCCc--e--eeeeecC-----CcCcEEEEEECC--CCC-e
Q psy4754 27 FGATSVDFSVSGRLLFAGY------------NDYTINVWDSLKC--C--RVNHLMG-----HENRVSCLQVSP--DGT-A 82 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~------------~dg~v~iwd~~~~--~--~~~~~~~-----h~~~V~~l~~s~--d~~-~ 82 (304)
++.-.++..|+|..+++++ .+|.|.++|+.+. + .+. +.+ ..-..-.+.+.+ +++ +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455677788876655542 7999999998732 2 221 222 112345666655 454 3
Q ss_pred EEEE-eC--CCceEEEEeeeCC--Cee--EeEEeccceeeceeeeEEcCCCCEEEEEe-----------------CCCeE
Q psy4754 83 FSSG-SW--DTTLRCRLFDLRA--DKE--VACYKKDSILFGATSVDFSVSGRLLFAGY-----------------NDYTI 138 (304)
Q Consensus 83 l~sg-s~--D~~i~~~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-----------------~dg~i 138 (304)
|+.+ .. +.++ .+|++.. ... +..+... .....+.+.+.++|.+.++.. ..|.|
T Consensus 129 L~Vvnh~~~~s~i--elf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 129 LLVVNHPGSSSTV--EVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEECSTTCCEE--EEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCCCeE--EEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 4333 22 3344 4555543 222 1222221 223457888889888666643 13566
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCce---EEEeecCceeeeeeEEEEcC-C
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSV-S 213 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~-~ 213 (304)
..+|..+ +..+...-...+.++|+||++.+..+.. .+. |+.|++..... ...+.. ...+-.+++.+ +
T Consensus 206 yr~d~~~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~--I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 206 TYYSPND---VRVVAEGFDFANGINISPDGKYVYIAELLAHK--IHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVT 277 (355)
T ss_dssp EEECTTC---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTE--EEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTT
T ss_pred EEEECCe---EEEeecCCcccCcceECCCCCEEEEEeCCCCe--EEEEEECCCCcEecCEEEeC---CCCCceEEEeCCC
Confidence 6666532 2222222345789999999987765543 444 46788753221 122321 12356788999 5
Q ss_pred CCEEEEEeCC-CcEEEEeCC--CceeeEEeec---cccceEEEEEccCCCEEE
Q psy4754 214 GRLLFAGYND-YTINVWDSL--KCCRVNHLMG---HENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 214 g~~l~sg~~d-~~i~iwd~~--~~~~~~~~~~---h~~~i~~l~~sp~g~~la 260 (304)
|++.+++..+ +.|..|+.. .+..+..+.. -...|.++ |..||+.|-
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l~ 329 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTVLQ 329 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSSCC
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCEEE
Confidence 9988876533 455555543 2445554442 23344444 666776543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.009 Score=51.57 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec---CCcCcEEEEEECCC---CC-eEEEEeCCC---ceEEEEee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPD---GT-AFSSGSWDT---TLRCRLFD 98 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~s~d---~~-~l~sgs~D~---~i~~~~wd 98 (304)
-..++|.|+|.++++ ..+|.|++++-.+.+.+..+. ........|+++|+ +. ++++-.... .-++..++
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 468999999996665 466999999822212222111 12346789999998 44 444433221 02234566
Q ss_pred eCCCe-----eEe-EEec-cceeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCcc------------
Q psy4754 99 LRADK-----EVA-CYKK-DSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKC------------ 146 (304)
Q Consensus 99 ~~~~~-----~~~-~~~~-~~~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~------------ 146 (304)
..... .+. .+.. .........++|.|++.+.++.+. .+.|..++....
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~ 191 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRG 191 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTT
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCC
Confidence 55321 111 1111 111112357899999975555321 256766665421
Q ss_pred cccee-ccCcccceeEEEEcC-CCcEEEEeecCCce------EEEEeeecC----------------CceEEEeecCcee
Q psy4754 147 CRVNH-LMGHENRVSCLQVSP-DGTAFSSGSWDTTL------RCRLFDLRA----------------DKEVACYKKDSIL 202 (304)
Q Consensus 147 ~~~~~-~~~h~~~v~~v~~sp-~~~~las~s~d~~i------~i~~~d~~~----------------~~~~~~~~~~~~~ 202 (304)
..... -.+|. ....++|+| +++++++-.....+ .+.+..... ...+..+..+
T Consensus 192 ~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~--- 267 (352)
T 2ism_A 192 ARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG--- 267 (352)
T ss_dssp SCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC---
T ss_pred CCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC---
Confidence 00111 12332 356789999 67766654332221 111221110 0011111111
Q ss_pred eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce------eeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC------RVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~------~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
.....++| .+|.++++....+.|...++.... ....+..-..++..+++.|||.++++..
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 12356667 567777776666777777654321 1222322346889999999998877754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.018 Score=55.09 Aligned_cols=255 Identities=13% Similarity=0.068 Sum_probs=139.5
Q ss_pred eeEEeeccccceEeeeec-----cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee--------------c
Q psy4754 5 HCRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--------------M 65 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~--------------~ 65 (304)
-+.+||..+++....... ......|.++...++|.+. .|...+-|.++|..+....... .
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 356677766543321111 1112338888888887655 4555456889998765422111 1
Q ss_pred CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEec-------cc-eeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-------DS-ILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 66 ~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-------~~-~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
.....|.++...++|++.+ |..++-+ ..++...... ..+.. .. ....+.++...+++. +..|+.++.
T Consensus 310 l~~~~v~~i~~D~~g~lWi-gt~~~Gl--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~G 384 (781)
T 3v9f_A 310 LSNASARYIFQDSFNNIWI-GTWGGGI--NFISNAPPTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGG 384 (781)
T ss_dssp BSSSCEEEEEECSSCCEEE-EEBSSCE--EEECSSCCSC-EEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred CCCCeEEEEEEeCCCCEEE-EecCCeE--EEeCCCCCcc-eeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence 2346799999888887544 4544443 4566554322 11211 00 011255666666665 555666677
Q ss_pred EEEecCCccccceec----cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-ceeeeeeEEEEcC
Q psy4754 138 INVWDSLKCCRVNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-SILFGATSVDFSV 212 (304)
Q Consensus 138 i~iwd~~~~~~~~~~----~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~ 212 (304)
+..||..+... ..+ ......|.++...+++++.+ |+.++-+ ..+|..+.+. ..+... .....+.++...+
T Consensus 385 l~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl--~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 385 INVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNI--SYYNTRLKKF-QIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp EEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEE--EEECSSSCEE-EECCSTTTCCCCEEEEEECT
T ss_pred EEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCE--EEEcCCCCcE-EEeccCCCCCCeEEEEEECC
Confidence 88888765321 111 12335688998888887655 4544443 4677665432 222211 1113467777788
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeEEeecc-----ccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-----ENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-----~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+|.+.+. .. +-+..||..+++........ ...|.++...++|...+....++ +..++.
T Consensus 460 ~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~ 522 (781)
T 3v9f_A 460 NKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP 522 (781)
T ss_dssp TSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred CCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence 8876554 44 56888987765432221111 36799999999888765443244 444544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0021 Score=54.66 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred eeEEcCCCCEEEEEe-CCCeEEEecCCccccce-eccC----c--ccceeEEEE---cCCCcEEEEeec-----------
Q psy4754 119 SVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVN-HLMG----H--ENRVSCLQV---SPDGTAFSSGSW----------- 176 (304)
Q Consensus 119 ~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~-~~~~----h--~~~v~~v~~---sp~~~~las~s~----------- 176 (304)
+.+|++....|+.++ ..+.|..||...+.... .+.+ . ...+..|.+ .|+++++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 577877655665555 78999999976443222 2221 1 113578999 688877775321
Q ss_pred --CCceEEEEeeec---CCceEEEeecC----c-------eeeeeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCceeeEE
Q psy4754 177 --DTTLRCRLFDLR---ADKEVACYKKD----S-------ILFGATSVDFSVSGRLLFAGYND-YTINVWDSLKCCRVNH 239 (304)
Q Consensus 177 --d~~i~i~~~d~~---~~~~~~~~~~~----~-------~~~~~~~~~~s~~g~~l~sg~~d-~~i~iwd~~~~~~~~~ 239 (304)
+.. +..+|+. +++.+...... . ....++.++..++|+.+++++.. +.|...+.... .+..
T Consensus 97 ~g~~~--v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 97 HGASS--FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp SSCCE--EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred CCCCE--EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 344 4578988 55554332211 0 12347899999999999998877 77777765432 3332
Q ss_pred eecc------ccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 240 LMGH------ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 240 ~~~h------~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+... .-..+.|++.|+|..|+....++.|.-+|...
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2211 11256899999998777765588887777653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0087 Score=51.01 Aligned_cols=227 Identities=10% Similarity=-0.013 Sum_probs=118.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC-CCe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADK 103 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~-~~~ 103 (304)
.+.++.|.+ +..++. +.+|.|.. ....|+ .+.....+.+.+..+.+.++++.++.+ .++.+ .+-.|-. +.+
T Consensus 81 ~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v-~~S~DgG~tW~ 155 (327)
T 2xbg_A 81 RFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI-YRTKDSGKNWQ 155 (327)
T ss_dssp EEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE-EEESSTTSSEE
T ss_pred cEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE-EEEcCCCCCCE
Confidence 478888876 444444 45665443 322232 222111233557788887777666655 35554 2444422 122
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC--CccccceeccCcccceeEEEEcCCCcEEEEeecCCceE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
.+. .. ....+..+.+.+++.+++.+...+..+-+|. .+.+.+. ......+..+.+.|+++.++. +.++.+
T Consensus 156 ~~~--~~--~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~- 227 (327)
T 2xbg_A 156 ALV--QE--AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKI- 227 (327)
T ss_dssp EEE--CS--CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEE-
T ss_pred Eee--cC--CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceE-
Confidence 221 11 1113457788888887776655555555553 3333332 234457888999999876654 446653
Q ss_pred EEEeeecCCceEEEeecC--ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee---ccccceEEEEEccCC
Q psy4754 182 CRLFDLRADKEVACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDG 256 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g 256 (304)
+..+...++.-...... .....+..+++.+++..++++. ++.+. +....++.-..+. .+...+.++.|.+++
T Consensus 228 -~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~ 304 (327)
T 2xbg_A 228 -AFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPD 304 (327)
T ss_dssp -EEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred -EEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence 33321112211111111 0012357888998888887765 56664 3333232222222 234578899998766
Q ss_pred CEEEEeecCCeeeec
Q psy4754 257 TAFSSGSWDTTLRDE 271 (304)
Q Consensus 257 ~~lasgs~D~~i~~~ 271 (304)
..+ .++.+++|.-+
T Consensus 305 ~~~-~~G~~G~i~~~ 318 (327)
T 2xbg_A 305 QGF-ILGQKGILLRY 318 (327)
T ss_dssp EEE-EECSTTEEEEE
T ss_pred ceE-EEcCCceEEEE
Confidence 655 44567776544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0086 Score=50.92 Aligned_cols=220 Identities=8% Similarity=0.045 Sum_probs=119.8
Q ss_pred CCcEEEEeCCCce-eeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeE-eEEeccceeeceeeeEEc
Q psy4754 47 DYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEV-ACYKKDSILFGATSVDFS 123 (304)
Q Consensus 47 dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~-~~~~~~~~~~~~~~~~~s 123 (304)
...|+..++.... ....+.........++|.+.++ ++.+-...+.| ..++....... ..... .......+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I--~r~~~~g~~~~~~~~~~--~l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI--KRTEFNKTESVQNVVVS--GLLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEE--EEEETTSSSCCCEEEEE--CCSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcE--EEEEccCCCceEEEEcC--CCCCccEEEEE
Confidence 4578888887542 1111111223466889988544 55555555554 55666544211 11111 11124567888
Q ss_pred CCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec--CCceEEEEeeecCCceEEEeecCc
Q psy4754 124 VSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDS 200 (304)
Q Consensus 124 ~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~--d~~i~i~~~d~~~~~~~~~~~~~~ 200 (304)
+.+..++.. ...+.|.++++..................+++.|.+..+..... ... |...++........... .
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~--I~r~~~dG~~~~~~~~~-~ 164 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK--IERAGMDGSSRFIIINS-E 164 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE--EEEEETTSCSCEEEECS-S
T ss_pred cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE--EEEEEcCCCCeEEEEEC-C
Confidence 755555554 45688999987543221112233456789999986555444432 233 45566554322222211 1
Q ss_pred eeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 201 ILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
....+.++++|++..| ++=...+.|..+|........-..+.......+++.. +..+.+-...+.|...+...
T Consensus 165 -l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 165 -IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred -CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 2345899999866554 4444567899998753222211222345567788864 45666666667777766533
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.023 Score=52.92 Aligned_cols=228 Identities=14% Similarity=0.044 Sum_probs=119.7
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~ 80 (304)
.+.||..|+.+.+........ ......+++|++.+. ++.+=...+.|..+++....... .+..--.....|++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 456888888865311111111 122368899998655 44555557889888886542212 222222567889998855
Q ss_pred C-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCccc
Q psy4754 81 T-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 81 ~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
+ ++++-...+.| .+.++........... .......+++.|.+..++.... .+.|...++.......-....-.
T Consensus 96 ~~ly~~d~~~~~I--~v~~~dG~~~~~l~~~--~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~ 171 (619)
T 3s94_A 96 EKLYWTDSETNRI--EVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 171 (619)
T ss_dssp TEEEEEETTTTEE--EEEETTSCSCEEEECS--SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CEEEEEeCCCCEE--EEEECCCCCEEEEEeC--CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC
Confidence 5 44454445554 5677654332222211 1224568899988777776653 35666666543222111122335
Q ss_pred ceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 158 RVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
....|++++++..|..+- ..+. |+.+|+........... . ...+..+++..+ ..+++-...+.|...|..+++.
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~--I~~~~~dG~~~~~~~~~-~-~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGTNRQAVVKG-S-LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCC--EEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCcEEEEEccCCEEEEEeCCCCe--EEEecCCCCccEEEEeC-C-CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 678999998765555443 3444 45677655333222211 1 122356677655 5556655677888888776654
Q ss_pred eEEe
Q psy4754 237 VNHL 240 (304)
Q Consensus 237 ~~~~ 240 (304)
...+
T Consensus 247 ~~~i 250 (619)
T 3s94_A 247 LREI 250 (619)
T ss_dssp CEEC
T ss_pred cEEE
Confidence 4433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.01 Score=49.59 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCce-----eeeeecCCcCcEEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC-----RVNHLMGHENRVSC 73 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d-----g~v~iwd~~~~~-----~~~~~~~h~~~V~~ 73 (304)
+.+..||+.+++-..............++. .++.+++.|+.+ ..+.+||+.+.+ .+..+......-..
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 357889998875322111111111122222 357788888865 468999987654 22222211111222
Q ss_pred EEECCCCCeEEEEeCCCce---EEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCc
Q psy4754 74 LQVSPDGTAFSSGSWDTTL---RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLK 145 (304)
Q Consensus 74 l~~s~d~~~l~sgs~D~~i---~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~ 145 (304)
+.+ +++.++.|+.++.- .+..+|..+.+-...............+. .+++.++.|+.+ ..+.+||..+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCC
Confidence 222 57777777755421 24677776544322211111111112222 256666666543 4688888765
Q ss_pred cc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 146 CC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 146 ~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
.+ .+..+......-..+.+ ++++++.|+.++. -.+.+||+.+.+....-...........+. -++++++.|
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~G 260 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIA 260 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEc
Confidence 42 22222111111122223 6778888876532 124678887765433211111111112222 266777776
Q ss_pred eCC-----CcEEEEeCCC
Q psy4754 221 YND-----YTINVWDSLK 233 (304)
Q Consensus 221 ~~d-----~~i~iwd~~~ 233 (304)
+.+ ..+.+||..+
T Consensus 261 G~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 261 GYDGNSLLSSIECYDPII 278 (301)
T ss_dssp CBCSSSBEEEEEEEETTT
T ss_pred CcCCCcccccEEEEcCCC
Confidence 644 3466777654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.014 Score=49.58 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=113.7
Q ss_pred EEEEECCCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccc------eeeceeeeEE---cCCCCEEEEEeC-------
Q psy4754 72 SCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDS------ILFGATSVDF---SVSGRLLFAGYN------- 134 (304)
Q Consensus 72 ~~l~~s~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~------~~~~~~~~~~---s~~~~~l~sg~~------- 134 (304)
.+++|.+....|..++ ..++| ..||...+..... .... ....+..+.+ .+++.++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V--~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRI--EVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEE--EEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCccCcCCCCEEEEEeccCCEE--EEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 4678877544444444 67875 5688764433222 2111 1123467888 588777665442
Q ss_pred ------CCeEEEecCC---ccccceec--cCc-----------ccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCc
Q psy4754 135 ------DYTINVWDSL---KCCRVNHL--MGH-----------ENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADK 191 (304)
Q Consensus 135 ------dg~i~iwd~~---~~~~~~~~--~~h-----------~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~ 191 (304)
+..+..+|+. +++.+... ... ......++..++|+..++++.- +.| ..++....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I--~rV~pdG~- 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI--ARVSADGK- 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE--EEECTTSC-
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE--EEEeCCCC-
Confidence 6789999988 66554321 111 1247899999999999998877 664 45555433
Q ss_pred eEEEeec----CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee--eEEee--cc---ccceEEE-EEccCCCE-
Q psy4754 192 EVACYKK----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLM--GH---ENRVSCL-QVSPDGTA- 258 (304)
Q Consensus 192 ~~~~~~~----~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~--~~~~~--~h---~~~i~~l-~~sp~g~~- 258 (304)
.+..+.. .....+.+.++++|+|..|++....+.+.-+|+.+... +. .. +. -.....| ..-.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEE
Confidence 2222211 11123457899999999999887799999999875433 22 11 21 1122332 33336766
Q ss_pred EEEeecCCeeeecc
Q psy4754 259 FSSGSWDTTLRDEE 272 (304)
Q Consensus 259 lasgs~D~~i~~~~ 272 (304)
|++.+..+.+.+..
T Consensus 249 lV~~~~~~~~~l~S 262 (334)
T 2p9w_A 249 LVGARAPYAISFRS 262 (334)
T ss_dssp EEEEETTEEEEEEC
T ss_pred EEEcCCCCEEEEEC
Confidence 55665566555443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.019 Score=49.49 Aligned_cols=226 Identities=14% Similarity=0.152 Sum_probs=118.0
Q ss_pred EEEEEECCCCCeEEEEe------------CCCceEEEEeeeCCCe-eEeEEeccc-----eeeceeeeEEcC--CCC-EE
Q psy4754 71 VSCLQVSPDGTAFSSGS------------WDTTLRCRLFDLRADK-EVACYKKDS-----ILFGATSVDFSV--SGR-LL 129 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs------------~D~~i~~~~wd~~~~~-~~~~~~~~~-----~~~~~~~~~~s~--~~~-~l 129 (304)
...+.+.|+|..+++++ .++. +.++|..... ....+.... ..+....+.+.+ ++. +|
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~--I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGK--ILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCE--EEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCe--EEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 34566778776666552 4665 4678876321 112222111 112344555544 343 44
Q ss_pred EEE-eC--CCeEEEecCCccc----cceeccCcc-cceeEEEEcCCCcEEEEeec---C------------CceEEEEee
Q psy4754 130 FAG-YN--DYTINVWDSLKCC----RVNHLMGHE-NRVSCLQVSPDGTAFSSGSW---D------------TTLRCRLFD 186 (304)
Q Consensus 130 ~sg-~~--dg~i~iwd~~~~~----~~~~~~~h~-~~v~~v~~sp~~~~las~s~---d------------~~i~i~~~d 186 (304)
+.+ .. +..|.+|++.... .+.++.+.. ...+.+.+.++|.++++... | ..-.+..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 22 5678888754322 223333322 35788999999987776531 1 112223334
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC-cee--eEEeeccccceEEEEEcc-CCCEEEE
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLK-CCR--VNHLMGHENRVSCLQVSP-DGTAFSS 261 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~sp-~g~~las 261 (304)
. ++...... .....+.++|+||++.|..+. ..+.|..|++.. +.. ...+ .-.+..-.+++.+ +|.+.++
T Consensus 210 ~--~~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 210 P--NDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp T--TCCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred C--CeEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence 3 22211111 123468999999998766654 567899998753 221 1223 2245677899999 5998887
Q ss_pred eecC-Ceeeeccccccchhheeeccc-cCCceeEEEEEecCCccC
Q psy4754 262 GSWD-TTLRDEESKNRYMQYLLRSRI-TKPTQGLTVYFQDRGRSI 304 (304)
Q Consensus 262 gs~D-~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 304 (304)
+..+ ..|.-+++...-.....+=+. ..+...+.-.++++|++|
T Consensus 284 ~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l 328 (355)
T 3sre_A 284 CHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVL 328 (355)
T ss_dssp EESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSC
T ss_pred ecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEE
Confidence 7654 234334433111112222111 112334677788888765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.023 Score=48.14 Aligned_cols=220 Identities=9% Similarity=0.006 Sum_probs=121.1
Q ss_pred CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCC---eeEeEEeccceeeceeeeEE
Q psy4754 47 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDF 122 (304)
Q Consensus 47 dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~---~~~~~~~~~~~~~~~~~~~~ 122 (304)
...|+..|+.+.+....+. .-.....++|.++++ .+++-...+.| ..+++... ......-.. .......+++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I--~~~~~~g~~~~~~~~~~~~~-~~~~p~glav 84 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR-DIQAPDGLAV 84 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEE--EEEEC--------CEEEECS-SCSCCCEEEE
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcE--EEEECCCCCCCcccEEEEeC-CCCCcCEEEE
Confidence 3468888987765444333 334567899998655 44555555554 55666541 111111111 1123457888
Q ss_pred cCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce
Q psy4754 123 SVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 123 s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~ 201 (304)
.+.+..++.. ...+.|.+.+...................+++.|.+..+..+.....-+|...++.... ...+....
T Consensus 85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~- 162 (316)
T 1ijq_A 85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN- 162 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSS-
T ss_pred eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECC-
Confidence 8766666554 55789999987543221112223346789999986554444333321123456654322 22221111
Q ss_pred eeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEee---ccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 202 LFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
....+.++++|++..|..+ ...+.|..+|.... ....+. ........|++. .+..+++-...+.|...+..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 2346889999876655444 45578999997632 222222 123445778885 46777777777778766643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.038 Score=51.53 Aligned_cols=224 Identities=8% Similarity=0.036 Sum_probs=114.6
Q ss_pred CCCcEEEEeCCCce-eeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCee-EeEEeccceeeceeeeEE
Q psy4754 46 NDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE-VACYKKDSILFGATSVDF 122 (304)
Q Consensus 46 ~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~-~~~~~~~~~~~~~~~~~~ 122 (304)
....|+.-++.... ....+...-.....++|.+.++.|+-+-. .+.| ..+++..... ...... .......+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I--~r~~~~g~~~~~~v~~~--~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI--KRTEFNKTESVQNVVVS--GLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEE--EEEEC-----CEEEECS--SCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeE--EEEEccCCCceEEEEeC--CCCCcCeEEE
Confidence 45567777776432 11112223345778999986665554333 4443 4566554321 111211 1223567889
Q ss_pred cCCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce
Q psy4754 123 SVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 123 s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~ 201 (304)
.+.++.++.+. ..+.|.+.++.......-....-.....|++.|.+..+....+...-+|...++........... .
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~-~- 169 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-E- 169 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-S-
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-C-
Confidence 88766666654 46899999876432211122334567889999965444433332222234445543322222211 1
Q ss_pred eeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 202 LFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
...++.+++++++..|.. =...+.|...|...........+.......|++.++ ..+.+-...+.|...+...+
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 234688999987555444 445577988887653332222222223356788766 66667666677776665443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.052 Score=52.03 Aligned_cols=222 Identities=10% Similarity=-0.000 Sum_probs=121.5
Q ss_pred CCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCC----eeEeEEeccceeeceeee
Q psy4754 46 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD----KEVACYKKDSILFGATSV 120 (304)
Q Consensus 46 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~----~~~~~~~~~~~~~~~~~~ 120 (304)
....|+..++........+ .....+..|+|.+... ++++-...+.| +.+++... .....+.. .......+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I--~~~~l~g~~~~~~~~~vi~~--~l~~P~GL 476 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR--DIQAPDGL 476 (791)
T ss_dssp CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEE--EEEEC--------CEEEECS--SCSCCCEE
T ss_pred cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeE--EEEeccCCCCCcceeEEEec--CCCCccee
Confidence 4456888887655433322 3345677899988544 44554444553 45666532 11111111 12234578
Q ss_pred EEcCCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC
Q psy4754 121 DFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199 (304)
Q Consensus 121 ~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~ 199 (304)
++.+.++.|+.+. ..+.|.+.++........+.........|++.|.+..|+...+...-+|...++...........
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~- 555 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE- 555 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-
Confidence 8888776666654 46899999876433222222333468899999975444443332212245667655433322222
Q ss_pred ceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 200 SILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 200 ~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
. ...++.+++.+.+..|..+ .....|...++........+.. ......+|++.. +.++++-...+.|...+...
T Consensus 556 ~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 556 N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred C-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCC
Confidence 1 2346889999766555444 4456788888754333222222 223456777754 46667766667776655433
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.022 Score=47.65 Aligned_cols=221 Identities=10% Similarity=0.057 Sum_probs=106.3
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC----CcEEEEeCCCce--eeeeecCCcCcEEEEEEC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d----g~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s 77 (304)
+.+..||+.+++=..............++. .++.+++.|+.+ ..+.+||+.+.+ .+..+......-..+.+
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 100 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA- 100 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-
Confidence 468889999875322111111111122233 367788888765 678899987764 22222211111122222
Q ss_pred CCCCeEEEEeCC-C---ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---------CCeEEEecCC
Q psy4754 78 PDGTAFSSGSWD-T---TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---------DYTINVWDSL 144 (304)
Q Consensus 78 ~d~~~l~sgs~D-~---~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---------dg~i~iwd~~ 144 (304)
+++.++.|+.+ + .-.+..+|..+.+-...............+. .++..++.|+. -..+.+||..
T Consensus 101 -~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 -EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp -TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred -CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 57777777765 1 1124677876654222211111111112222 34555555542 3458888876
Q ss_pred ccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEE
Q psy4754 145 KCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 145 ~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+.+ .+..+......-..+.+ ++++++.|+.+.. -.+..||+.+.+-...-...........+.+ ++++++.
T Consensus 178 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 253 (306)
T 3ii7_A 178 TETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL 253 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred CCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence 542 22222211111122223 6778888875432 1246788776554322111111111222222 6777777
Q ss_pred EeCC-----CcEEEEeCCCc
Q psy4754 220 GYND-----YTINVWDSLKC 234 (304)
Q Consensus 220 g~~d-----~~i~iwd~~~~ 234 (304)
|+.+ ..+.+||..+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTT
T ss_pred eCcCCCeeeeeEEEEcCCCC
Confidence 7743 46788887653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.023 Score=47.47 Aligned_cols=221 Identities=13% Similarity=0.178 Sum_probs=104.2
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg-----~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
..+..||+.+++-............-.++. .++.+++.|+.++ .+.+||+.+.+ .+..+......-..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 357888988875322111111111112222 2677888888653 58899987653 22222211111222222
Q ss_pred CCCCCeEEEEeCCCc---eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-------CCeEEEecCCcc
Q psy4754 77 SPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-------DYTINVWDSLKC 146 (304)
Q Consensus 77 s~d~~~l~sgs~D~~---i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-------dg~i~iwd~~~~ 146 (304)
+++.++.|+.++. -.+..+|+.+.+-............ .++.. .++..++.|+. -..+.+||..+.
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 5677777776542 1245677665432221111111111 12222 24555555543 245888887654
Q ss_pred c--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 147 C--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 147 ~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
+ .+..+......-..+.+ ++++++.|+.++. -.+..||..+.+-...-...........+ ..++++++.|+
T Consensus 184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG 259 (302)
T 2xn4_A 184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGG 259 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECC
T ss_pred cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECC
Confidence 2 22222211111222223 6778888886542 12467888776543321111100111112 23667777776
Q ss_pred CCC-----cEEEEeCCCc
Q psy4754 222 NDY-----TINVWDSLKC 234 (304)
Q Consensus 222 ~d~-----~i~iwd~~~~ 234 (304)
.++ .+.+||..+.
T Consensus 260 ~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BCSSSBCCCEEEEETTTT
T ss_pred cCCCcccccEEEEcCCCC
Confidence 542 4777887654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.047 Score=50.96 Aligned_cols=225 Identities=9% Similarity=-0.014 Sum_probs=128.4
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
..|+..|+.+.+.....+... .....+++|++.+. ++.+-..++.|..+++........+..-......|++.+.+..
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~ 93 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKN 93 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred CcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCE
Confidence 568888888765433323221 23478999998654 5566677899999998654322222222234567888765554
Q ss_pred E-EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCcccce
Q psy4754 83 F-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 83 l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
| ++-...+. |.+.++........... .......+++.|....++.... .+.|...++.... ...+...-...
T Consensus 94 LY~tD~~~~~--I~v~~~dG~~~~~l~~~--~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P 168 (628)
T 4a0p_A 94 LYWADTGTNR--IEVSKLDGQHRQVLVWK--DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRA 168 (628)
T ss_dssp EEEEETTTTE--EEEEETTSTTCEEEECS--SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSE
T ss_pred EEEEECCCCE--EEEEecCCCcEEEEEeC--CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCc
Confidence 4 44444444 45666654332222211 1234568899987777777653 4677777764332 22222334568
Q ss_pred eEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 160 SCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 160 ~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
..|++++++..|..+- ..+. |..+|+..... ..+... ...+..+++.. +.++++-...+.|...|..++....
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~--I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNL--IESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred ceEEEccccCEEEEEECCCCE--EEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 8999999766655544 3444 45677765433 222211 12345667655 5666666667888888866655443
Q ss_pred Ee
Q psy4754 239 HL 240 (304)
Q Consensus 239 ~~ 240 (304)
.+
T Consensus 243 ~l 244 (628)
T 4a0p_A 243 II 244 (628)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.60 E-value=0.032 Score=48.99 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=124.4
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe-EEEEeCCCceEEEEeeeCCCe----eEeEEeccce
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADK----EVACYKKDSI 113 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~-l~sgs~D~~i~~~~wd~~~~~----~~~~~~~~~~ 113 (304)
.+|+.+ ....|+..++........ ......+..++|.+..+. +.+-...+.| +.+++.... ....... .
T Consensus 84 ~~ll~~-~~~~I~~i~l~~~~~~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I--~~~~~~g~~~~~~~~~~~~~--~ 157 (400)
T 3p5b_L 84 AYLFFT-NRHEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR--D 157 (400)
T ss_dssp CEEEEE-ETTEEEEECTTSCSCEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEE--EEEEC------CCCEEEECS--S
T ss_pred ceeEEe-ccceeEEEccCCcceeEe-ccccCcceEEeeeeccCceEEEecCCCeE--EEEEcccCCCCCcceEEEeC--C
Confidence 344443 346788888876543332 234466789999986554 4454445553 456665311 1111111 1
Q ss_pred eeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC--CceEEEEeeecCC
Q psy4754 114 LFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD--TTLRCRLFDLRAD 190 (304)
Q Consensus 114 ~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d--~~i~i~~~d~~~~ 190 (304)
......+++.+.+..|+.. ...+.|.+.++........+.........|++.|.+..+...... .. |...++...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~--I~~~~~dG~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK--IKKGGLNGV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC--EEEEETTSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE--EEEEeCCCC
Confidence 1234578888755556555 457899999876543222222233457899999965544433322 33 456666543
Q ss_pred ceEEEeecCceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCCEEEEeecCCe
Q psy4754 191 KEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
......... ...++.++++|++..|..+ ...+.|..+|............ .......|++. .+..+.+-...+.
T Consensus 236 ~~~~~~~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 236 DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp SCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred ccEEEEECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 332222221 1345889999876655554 4457899998754322222222 23455677774 4566777766677
Q ss_pred eeeccccc
Q psy4754 268 LRDEESKN 275 (304)
Q Consensus 268 i~~~~~~~ 275 (304)
|...+...
T Consensus 313 V~~~~~~~ 320 (400)
T 3p5b_L 313 IFSANRLT 320 (400)
T ss_dssp EEEEESSS
T ss_pred EEEEEcCC
Confidence 77666433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.018 Score=48.06 Aligned_cols=220 Identities=12% Similarity=0.120 Sum_probs=104.3
Q ss_pred CCCEEEEee-CC-----CcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCc---eEEEEeeeCCCe--
Q psy4754 37 SGRLLFAGY-ND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADK-- 103 (304)
Q Consensus 37 ~g~~l~tg~-~d-----g~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~---i~~~~wd~~~~~-- 103 (304)
++.+++.|+ .+ ..+.+||+.+.+ .+..+.........+. .+++.++.|+.++. -.+..+|..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 456677777 33 478899987654 2222221111122222 35677777775531 124678876544
Q ss_pred -eEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEee
Q psy4754 104 -EVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
-...............+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ ++++++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 111111111111112222 245666666532 468888876543 22222211111122222 677888887
Q ss_pred cCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeecccc
Q psy4754 176 WDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHEN 245 (304)
Q Consensus 176 ~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~ 245 (304)
.++. -.+..||+.+.+-...-...........+. -++++++.|+.+ ..+.+||..+.+ .+..+.....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 6542 124678877665433211111111112222 256777777653 468899987643 2222211111
Q ss_pred ceEEEEEccCCCEEEEeecCC
Q psy4754 246 RVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 246 ~i~~l~~sp~g~~lasgs~D~ 266 (304)
...++. -+++.++.|+.+.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 246 YVGATV--LRGRLYAIAGYDG 264 (301)
T ss_dssp SCEEEE--ETTEEEEECCBCS
T ss_pred ceeEEE--ECCEEEEEcCcCC
Confidence 222222 3678888887663
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.051 Score=46.81 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=121.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-eeeeec---CCcCcEEEEEECCC----CCeEEEEeC---CC--ceEEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLM---GHENRVSCLQVSPD----GTAFSSGSW---DT--TLRCR 95 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-~~~~~~---~h~~~V~~l~~s~d----~~~l~sgs~---D~--~i~~~ 95 (304)
-..++|.|+|.++++ ..+|.|++++. +++ .+..+. ........|+++|+ +.++++-+. ++ .-+|.
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 578999999986655 46699999974 443 222211 12346789999997 444444432 20 02234
Q ss_pred EeeeCCC-------eeE-eEEeccceeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCccc-------
Q psy4754 96 LFDLRAD-------KEV-ACYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKCC------- 147 (304)
Q Consensus 96 ~wd~~~~-------~~~-~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~~------- 147 (304)
.++.... +.+ ..+.... ......+.|.||+.+.++.+. .|.|..++....-
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 5665433 111 1111111 112356899999976665322 2566666643210
Q ss_pred ccee-ccCcccceeEEEEcC-CCcEEEEeecCCc-eEEEEeeecC--------C--------ceEEEeecCceeeeeeEE
Q psy4754 148 RVNH-LMGHENRVSCLQVSP-DGTAFSSGSWDTT-LRCRLFDLRA--------D--------KEVACYKKDSILFGATSV 208 (304)
Q Consensus 148 ~~~~-~~~h~~~v~~v~~sp-~~~~las~s~d~~-i~i~~~d~~~--------~--------~~~~~~~~~~~~~~~~~~ 208 (304)
.... -.+|. ....++|+| +++++++-..... -.+.+..... + ..+..+.. ....+..+
T Consensus 188 ~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~--~~~ap~G~ 264 (354)
T 3a9g_A 188 NSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS--ETWAPSGA 264 (354)
T ss_dssp TCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT--CCCCEEEE
T ss_pred CCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC--CCcCCcce
Confidence 0011 12332 356899999 6776665432221 1111111100 0 11112200 01235677
Q ss_pred EEc-------CCCCEEEEEeCCCcEEEEeCCCc-ee--eEEee-ccccceEEEEEccCCCEEEEee
Q psy4754 209 DFS-------VSGRLLFAGYNDYTINVWDSLKC-CR--VNHLM-GHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 209 ~~s-------~~g~~l~sg~~d~~i~iwd~~~~-~~--~~~~~-~h~~~i~~l~~sp~g~~lasgs 263 (304)
+|. .+|.++++....+.|...++... .. ...+. +-..++..+++.|||.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 773 56777777767778888877642 22 12332 2246789999999998887764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.043 Score=45.79 Aligned_cols=220 Identities=14% Similarity=0.166 Sum_probs=102.9
Q ss_pred CCCEEEEeeCC----CcEEEEeCCCcee--eeeecCCcCcEEEEEECCCCCeEEEEeCCCc---eEEEEeeeCCCeeEeE
Q psy4754 37 SGRLLFAGYND----YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVAC 107 (304)
Q Consensus 37 ~g~~l~tg~~d----g~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~---i~~~~wd~~~~~~~~~ 107 (304)
++.+++.|+.+ ..+..||+.+.+- +..+......-..+.+ +++.++.|+.++. -.+..+|..+.+-...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34566677654 3688889876542 1112111111112222 5677777775532 1246777765442222
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc-
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT- 179 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~- 179 (304)
............+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ +++.++.|+.++.
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVAS 168 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTT
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCC
Confidence 11111111112222 245666666544 357788876543 22222211111122222 6778888775332
Q ss_pred ----eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeeccccceE
Q psy4754 180 ----LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVS 248 (304)
Q Consensus 180 ----i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~~i~ 248 (304)
-.+..||+.+.+-...-...........+. -++++++.|+.+ ..+.+||..+.+ .+..+......-.
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 124678887765433211111111112222 267777777653 368889987643 2222211111112
Q ss_pred EEEEccCCCEEEEeecCC
Q psy4754 249 CLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~ 266 (304)
++ ..+++.++.|+.+.
T Consensus 247 ~~--~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 247 VC--AVNGLLYVVGGDDG 262 (302)
T ss_dssp EE--EETTEEEEECCBCS
T ss_pred EE--EECCEEEEECCcCC
Confidence 22 23678888888764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.041 Score=46.16 Aligned_cols=220 Identities=11% Similarity=0.095 Sum_probs=101.9
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC----C-----CcEEEEeCCCce--eeeeecCCcCcEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----D-----YTINVWDSLKCC--RVNHLMGHENRVS 72 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----d-----g~v~iwd~~~~~--~~~~~~~h~~~V~ 72 (304)
+.+.+||+.+++-..............++. .++.+++.|+. + ..+.+||+.+.+ .+..+......-.
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 458889998875322111111111122222 26777788876 2 468899987653 2222221111122
Q ss_pred EEEECCCCCeEEEEeCCCc---eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCC
Q psy4754 73 CLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSL 144 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~---i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~ 144 (304)
.+.+ +++.++.|+.++. -.+..+|..+.+-...............+.+ ++..++.|+.+ ..+.+||..
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC
Confidence 2222 5677777764432 1145677765432211111111111122222 45566666543 458888876
Q ss_pred ccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEE
Q psy4754 145 KCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 145 ~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+.+ .+..+......-..+.+ ++++++.|+.++. -.+..||+.+.+-...-...........+. -++++++.
T Consensus 193 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~ 268 (308)
T 1zgk_A 193 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVL 268 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE
T ss_pred CCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEE
Confidence 542 22222211111222333 6778888876532 224678887765432211111001111222 25667777
Q ss_pred EeCC-----CcEEEEeCCC
Q psy4754 220 GYND-----YTINVWDSLK 233 (304)
Q Consensus 220 g~~d-----~~i~iwd~~~ 233 (304)
|+.+ ..+.+||..+
T Consensus 269 GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 269 GGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp CCBCSSCBCCEEEEEETTT
T ss_pred cCcCCCcccceEEEEcCCC
Confidence 6543 3466677654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.05 Score=45.46 Aligned_cols=219 Identities=9% Similarity=0.108 Sum_probs=103.6
Q ss_pred CCEEEEeeC--CCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCC--ceEEEEeeeCCCeeEeEEecc
Q psy4754 38 GRLLFAGYN--DYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDT--TLRCRLFDLRADKEVACYKKD 111 (304)
Q Consensus 38 g~~l~tg~~--dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~--~i~~~~wd~~~~~~~~~~~~~ 111 (304)
+.+++.|+. ...+.+||+.+.+ .+..+......-..+. .+++.++.|+.+. .-.+..+|..+.+-.......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 345566654 3678899987754 2222221111222222 2566777777551 122456777665432221111
Q ss_pred ceeeceeeeEEcCCCCEEEEEeCC------CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc----
Q psy4754 112 SILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---- 179 (304)
Q Consensus 112 ~~~~~~~~~~~s~~~~~l~sg~~d------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---- 179 (304)
........+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ ++++++.|+.++.
T Consensus 90 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 90 TPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp SCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred ccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence 1111112222 256666666544 568888876543 22222111111122222 6677777764321
Q ss_pred ---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeeccccceEE
Q psy4754 180 ---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSC 249 (304)
Q Consensus 180 ---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~~i~~ 249 (304)
-.+..||+.+.+....-...........+.+ ++++++.|+.+ ..+.+||..+.+ .+..+........+
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred cccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 1246788877654332111111111122222 66777776543 458889876642 22222222222233
Q ss_pred EEEccCCCEEEEeecCC
Q psy4754 250 LQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 250 l~~sp~g~~lasgs~D~ 266 (304)
+.+ ++..++.|+.++
T Consensus 244 ~~~--~~~i~v~GG~~~ 258 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQG 258 (306)
T ss_dssp EEE--TTEEEEEECBCS
T ss_pred EEE--CCEEEEEeCcCC
Confidence 333 678888888653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0027 Score=60.19 Aligned_cols=217 Identities=9% Similarity=0.014 Sum_probs=113.5
Q ss_pred CCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEE-eCCCceEEEEeeeCC----CeeEeEEeccceeeceeee
Q psy4754 46 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDTTLRCRLFDLRA----DKEVACYKKDSILFGATSV 120 (304)
Q Consensus 46 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sg-s~D~~i~~~~wd~~~----~~~~~~~~~~~~~~~~~~~ 120 (304)
....|+..++.+.+....+.. ...+..++|.+.+..|+-. ...+.| +.+++.. ......+.. .......+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I--~~~~~~g~~~~~~~~~~i~~--~~~~P~gl 458 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR--DIQAPDGL 458 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSB--EEEESCCCCC-CCCCCBCCS--CC--CCCE
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeE--EEEecCCCCCCcceEEEEeC--CCCCcceE
Confidence 345788888876554433322 2345678998866655543 344554 4566653 111111110 11123467
Q ss_pred EEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-C-CceEEEEeeecCCceEEEee
Q psy4754 121 DFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-D-TTLRCRLFDLRADKEVACYK 197 (304)
Q Consensus 121 ~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d-~~i~i~~~d~~~~~~~~~~~ 197 (304)
++.+.+..|+.+ ...+.|.+.++........+.........++++|.+..|+.... . +. |..+++...... .+.
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~--I~~~~~dG~~~~-~l~ 535 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK--IKKGGLNGVDIY-SLV 535 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC--EEBCCSSSCCCC-EES
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe--EEEEeCCCCCee-EEE
Confidence 777555555544 45688999987643322112222345678899986554443332 2 34 345555432221 111
Q ss_pred cCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCceeeEEee---ccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 198 KDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
... ....+.++++|++ .++++-...+.|..+++.... ...+. +.......|++..+ ..+++....+.|...+.
T Consensus 536 ~~~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 1235789999875 455555566789999875432 22222 12233456677654 56666666677776664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.097 Score=47.16 Aligned_cols=198 Identities=10% Similarity=0.040 Sum_probs=108.6
Q ss_pred EEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-eeeceeeeEE-------cCCCCEEEEEeCCC-----
Q psy4754 71 VSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDF-------SVSGRLLFAGYNDY----- 136 (304)
Q Consensus 71 V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-~~~~~~~~~~-------s~~~~~l~sg~~dg----- 136 (304)
-..|+|.| ++..|+.+..+. -.+++.|+............. .......++| +++++.++.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~-~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGH-KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETE-EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCC-CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45789998 455555554432 235778877655443332211 1113567889 99999777766554
Q ss_pred --eEEEecCCc-cccc-----eeccCcccceeEEEEcCC-CcEEEEeecCCceEEEEeeec-------CCce--------
Q psy4754 137 --TINVWDSLK-CCRV-----NHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLR-------ADKE-------- 192 (304)
Q Consensus 137 --~i~iwd~~~-~~~~-----~~~~~h~~~v~~v~~sp~-~~~las~s~d~~i~i~~~d~~-------~~~~-------- 192 (304)
.|.+.+... +... ..+... .....++++|+ +.++++-..++.+ ..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V--~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQV--FRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEE--EEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEE--EEEecccccccccCceeeccccccc
Confidence 255665322 1111 111111 23467889995 5555555556654 678876 3332
Q ss_pred ---E-EEeecCceeeeeeEEEEcCCCCE-EEEEeCCCcEEEEeC--CCcee--eEEeecc---c------------cceE
Q psy4754 193 ---V-ACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDS--LKCCR--VNHLMGH---E------------NRVS 248 (304)
Q Consensus 193 ---~-~~~~~~~~~~~~~~~~~s~~g~~-l~sg~~d~~i~iwd~--~~~~~--~~~~~~h---~------------~~i~ 248 (304)
. ..+.... ......++|+|+|++ +++=...+.|+.++. ..+.. ...+.+. . ....
T Consensus 297 ~g~~~~l~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 297 PNTFKQLFTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTTEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccccceeEecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 1 1111111 112468999999995 444445677888553 33221 0222221 1 1234
Q ss_pred -EEEEc-------cCCCEEEEeecCCeeeeccc
Q psy4754 249 -CLQVS-------PDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 249 -~l~~s-------p~g~~lasgs~D~~i~~~~~ 273 (304)
.++.. ++|.++++-+....||.++.
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 45554 56788888888889998874
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.13 Score=47.97 Aligned_cols=222 Identities=9% Similarity=-0.022 Sum_probs=125.2
Q ss_pred CCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEc
Q psy4754 46 NDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123 (304)
Q Consensus 46 ~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s 123 (304)
....|+.-++.+......+. ..-..+..|+|.+.+..| .+-..++.| ..+++............ ......+++.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I--~r~~~~g~~~~~v~~~g--~~~P~GlAvD 88 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTI--SRAFMNGSALEHVVEFG--LDYPEGMAVD 88 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEE--EEEETTSCSCEEEECSS--CSCCCEEEEE
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeE--EEEECCCCCcEEEEeCC--CCCcceEEEE
Confidence 56678888887543222221 123457799999865554 454455554 45665543222222211 1234578888
Q ss_pred CCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee
Q psy4754 124 VSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 124 ~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
+.+..|+.+. ..+.|.+.++.......-....-.....|++.|....|.-..+...-+|...++........... .
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~---~ 165 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN---V 165 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---C
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC---C
Confidence 7766666654 46889998875432211112333567899999854444433332122345566554433222221 2
Q ss_pred eeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 203 FGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
..++.+++++++..|..+ ...+.|..+|+..... ..+.........|++.. +..+.|-...+.|...+...+
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 346889999976655554 4557798888754332 23333344556888875 567777766777776664443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.084 Score=45.43 Aligned_cols=228 Identities=12% Similarity=0.106 Sum_probs=117.6
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceee---eee----cCCcCcEEEEEECCC----CCeEEEEeC---CC--c
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRV---NHL----MGHENRVSCLQVSPD----GTAFSSGSW---DT--T 91 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~---~~~----~~h~~~V~~l~~s~d----~~~l~sgs~---D~--~ 91 (304)
-..++|.|+|+ ++++ ...|.|++++.. +... ..+ .........++++|+ +.+.++-+. ++ .
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 57899999999 6654 467999999864 3221 111 112345689999995 444444332 11 2
Q ss_pred eEEEEeeeCCC----eeEe-EEeccc----eeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCccc--
Q psy4754 92 LRCRLFDLRAD----KEVA-CYKKDS----ILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKCC-- 147 (304)
Q Consensus 92 i~~~~wd~~~~----~~~~-~~~~~~----~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~~-- 147 (304)
-++.-+++... .... .+.... .......+.|.||+.+.++.+. .|.|..+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 22344555322 1111 111100 0111357899999965444322 2467666654210
Q ss_pred ----------cceec-cCcccceeEEEEcC-CCcEEEEeec-CCceEEEEee--------ecCC----------------
Q psy4754 148 ----------RVNHL-MGHENRVSCLQVSP-DGTAFSSGSW-DTTLRCRLFD--------LRAD---------------- 190 (304)
Q Consensus 148 ----------~~~~~-~~h~~~v~~v~~sp-~~~~las~s~-d~~i~i~~~d--------~~~~---------------- 190 (304)
....+ .+|. ....++|+| +++++++-.. ++.-.+.+.. ....
T Consensus 178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 11111 2332 367899999 6766654332 1111111111 0000
Q ss_pred -----ceEEEeecCceeeeeeEEEEcC-------CCCEEEEEeCCCcEEEEeCCCceeeEE--ee-ccccceEEEEEccC
Q psy4754 191 -----KEVACYKKDSILFGATSVDFSV-------SGRLLFAGYNDYTINVWDSLKCCRVNH--LM-GHENRVSCLQVSPD 255 (304)
Q Consensus 191 -----~~~~~~~~~~~~~~~~~~~~s~-------~g~~l~sg~~d~~i~iwd~~~~~~~~~--~~-~h~~~i~~l~~sp~ 255 (304)
..+..+..+ ..+..++|.. +|.++++....+.|...++..+..+.. +. .-..++..+++.||
T Consensus 257 ~~~~~~P~~~~~~~---~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 257 VAGTEQPVFYWKDS---PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp CTTSCCCSEEESSC---CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCccCCeEEeCCC---cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 001111111 1345667753 477777777778888777665443322 22 22358999999999
Q ss_pred CCEEEEe
Q psy4754 256 GTAFSSG 262 (304)
Q Consensus 256 g~~lasg 262 (304)
|.++++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9977753
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.042 Score=47.08 Aligned_cols=170 Identities=9% Similarity=0.157 Sum_probs=102.7
Q ss_pred CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCC----CcE--EE--Eeec--CCceEEEEeeec--CCceE
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD----GTA--FS--SGSW--DTTLRCRLFDLR--ADKEV 193 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~----~~~--la--s~s~--d~~i~i~~~d~~--~~~~~ 193 (304)
...++.....+.+.+||+ +++.+..+.. +.++.|..-|+ ++. ++ +.-. +++ +.+|++. +. .+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~--l~vf~iDp~~~-~l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT--IEIYAIDGKNG-TL 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCE--EEEEEECTTTC-CE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCe--EEEEEECCCCC-ce
Confidence 445666677889999998 6666666543 56777777663 222 33 3333 355 4688663 32 23
Q ss_pred EEeecC-----ceeeeeeEEEE--cCC-CC-EEEEEeCCCcEEEEeC-------CCceeeEEeeccccceEEEEEccCCC
Q psy4754 194 ACYKKD-----SILFGATSVDF--SVS-GR-LLFAGYNDYTINVWDS-------LKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 194 ~~~~~~-----~~~~~~~~~~~--s~~-g~-~l~sg~~d~~i~iwd~-------~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
..+... .....+..+++ +|. +. ++++...++.+..|++ .+.+.++++.-. +.+-.+++.+...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC
Confidence 333110 11123455666 674 54 6777778899999987 344567777643 5778889999888
Q ss_pred EEEEeecCCeeeeccccccc---hhhe---eeccccCCceeEEEEEecCCc
Q psy4754 258 AFSSGSWDTTLRDEESKNRY---MQYL---LRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~ 302 (304)
.|..+-+|.-|.-++..+.- ...+ .........+||.++-.++|+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK 243 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence 88899898765444433221 1111 123344457899988776554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.1 Score=44.20 Aligned_cols=223 Identities=13% Similarity=0.017 Sum_probs=115.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeee-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee-CCC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL-RAD 102 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~-~~~ 102 (304)
.+.++.|.+++..+++ +..|.| +.....++ .+.. .......+.++.+.+ ++.++ ++.++.+. +--|- .+.
T Consensus 37 ~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~-~S~DgG~tW 111 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIML-HTTDGGQSW 111 (327)
T ss_dssp CEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEE-EESSTTSSC
T ss_pred cEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEE-EECCCCCCc
Confidence 4888999877777775 467765 33333332 2211 112344688899876 44444 44455431 21121 111
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE-EEecC-CccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI-NVWDS-LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i-~iwd~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+.+....... .....+.+.+++..++.+ .++.| +-.|- .+.+.+. ..+...+..+.+.|+++.++.+. ++.+
T Consensus 112 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~ 185 (327)
T 2xbg_A 112 SQIPLDPKLP--GSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSF 185 (327)
T ss_dssp EECCCCTTCS--SCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSE
T ss_pred eECccccCCC--CCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcE
Confidence 2211100000 012345555666555544 45544 44452 2333332 23455788999999988877654 4443
Q ss_pred EEEEeee--cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee----ccccceEEEEEcc
Q psy4754 181 RCRLFDL--RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM----GHENRVSCLQVSP 254 (304)
Q Consensus 181 ~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~----~h~~~i~~l~~sp 254 (304)
.+-.|. .+-+.+. ... ...+..+++.+++..++.+ .+|.+++++...++.-..+. .+...+.++++.|
T Consensus 186 -~~S~d~gG~tW~~~~--~~~--~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 186 -YSTWEPGQTAWEPHN--RTT--SRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp -EEEECTTCSSCEEEE--CCS--SSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred -EEEeCCCCCceeECC--CCC--CCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 233332 1112221 111 1245678889999877655 56777776422232222221 1224588999999
Q ss_pred CCCEEEEeecCCee
Q psy4754 255 DGTAFSSGSWDTTL 268 (304)
Q Consensus 255 ~g~~lasgs~D~~i 268 (304)
++..++.+. ++.|
T Consensus 260 ~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 260 PNEVWLAGG-AGAL 272 (327)
T ss_dssp SSCEEEEES-TTCE
T ss_pred CCEEEEEeC-CCeE
Confidence 888888765 4544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.11 Score=44.52 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=119.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee--eeee----cCCcCcEEEEEECCC----CCeEEEEe--CCCceEEEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHL----MGHENRVSCLQVSPD----GTAFSSGS--WDTTLRCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~--~~~~----~~h~~~V~~l~~s~d----~~~l~sgs--~D~~i~~~~ 96 (304)
-..++|.|+|.++++--..|.|++++...++. +..+ .........|+++|+ +.+.++=+ .+.. +.-
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~--v~R 111 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR--IVR 111 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE--EEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE--EEE
Confidence 57899999999888776689999998765532 2212 123456789999995 44444311 2222 223
Q ss_pred eeeCCC----------eeEe-EEeccceeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCccc----c
Q psy4754 97 FDLRAD----------KEVA-CYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKCC----R 148 (304)
Q Consensus 97 wd~~~~----------~~~~-~~~~~~~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~~----~ 148 (304)
+..... +.+. .+.... ......+.|.||+.+.++.+. .|.|.-.+....- +
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~-~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGV-IHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCS-SCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCC-CccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 433321 1111 111111 112356899999987666432 3555555543210 0
Q ss_pred ---cee-ccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCc------------------eEEEeecCceeeee
Q psy4754 149 ---VNH-LMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADK------------------EVACYKKDSILFGA 205 (304)
Q Consensus 149 ---~~~-~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~------------------~~~~~~~~~~~~~~ 205 (304)
... -.+|. ....++|+|+++++++-. .|..-.+... ..+. .+..+.... ...
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~--~ap 265 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE--ASP 265 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTTT--CCE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCCC--CCC
Confidence 011 12454 346789999988766542 2322111111 1111 111111110 123
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCcee----eEEeeccccceEEEEEccCCCEEEEee
Q psy4754 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCR----VNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~----~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
..++|. +|.+++..-..+.|....+..... ..-+.+..+++..|+..|||.++++-.
T Consensus 266 ~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456665 466666666666665555443321 222344457899999999998777643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.13 Score=43.18 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=87.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC----C-------CcEEEEeCCCcee--eeeecCCc
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----D-------YTINVWDSLKCCR--VNHLMGHE 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----d-------g~v~iwd~~~~~~--~~~~~~h~ 68 (304)
|.+.+..||+.+++=.. .................++.+++.|+. + ..+..||+.+.+- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 45678899999986321 111111111222233457788888874 1 1277888876532 22221111
Q ss_pred CcEEEEEECCCCCeEEEEeCC----C--ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC------CC
Q psy4754 69 NRVSCLQVSPDGTAFSSGSWD----T--TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------DY 136 (304)
Q Consensus 69 ~~V~~l~~s~d~~~l~sgs~D----~--~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~------dg 136 (304)
..-..+.+ +++.++.|+.+ . .-.+..+|..+.+-............ .++. ..+++.++.|+. -.
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCC
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccc
Confidence 11112222 56677777743 1 11245677765432111111111111 1222 244556666654 24
Q ss_pred eEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceE
Q psy4754 137 TINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEV 193 (304)
Q Consensus 137 ~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~ 193 (304)
.+.+||..+.+ .+..+......-.++.+ ++++++.|+.++. -.+..||+.+.+-.
T Consensus 166 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 166 KMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred eEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 68888876532 22222211111122223 6778888886553 12467787776543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.13 Score=42.97 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=104.0
Q ss_pred EEcCCCCEEEEeeCC----CcEEEEeCCCcee--eeeecCCcCcEEEEEECCCCCeEEEEeC----CCc---eEEEEeee
Q psy4754 33 DFSVSGRLLFAGYND----YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSW----DTT---LRCRLFDL 99 (304)
Q Consensus 33 ~~~~~g~~l~tg~~d----g~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~sgs~----D~~---i~~~~wd~ 99 (304)
+...++.+++.|+.+ ..+.+||+.+.+- +..+......-..+.+ +++.++.|+. ++. -.++.+|.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 334467788888742 4688999876542 2112111111122222 5667777765 221 11456777
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~la 172 (304)
.+.+-...............+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ ++++++
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 6543221111111111112222 245566665432 467888876542 22222211111222233 677888
Q ss_pred EeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeec
Q psy4754 173 SGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMG 242 (304)
Q Consensus 173 s~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~ 242 (304)
.|+.++. -.+..||+.+.+-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+ .+..+..
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 8876532 1245778776543322111111111122222 67777777654 468889976643 2222211
Q ss_pred cccceEEEEEccCCCEEEEeecCC
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
......++. -+++.++.|+.++
T Consensus 252 ~r~~~~~~~--~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 252 RRSALGITV--HQGRIYVLGGYDG 273 (308)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCS
T ss_pred CccceEEEE--ECCEEEEEcCcCC
Confidence 111122222 2678888888654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.18 Score=42.26 Aligned_cols=184 Identities=12% Similarity=0.061 Sum_probs=86.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC----CC-------cEEEEeCCCcee--eeeecCCc
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----DY-------TINVWDSLKCCR--VNHLMGHE 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----dg-------~v~iwd~~~~~~--~~~~~~h~ 68 (304)
|...+..||+.+++-.. .................++.+++.|+. ++ .+..||+.+.+- +..+....
T Consensus 22 GG~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 22 NDTAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp CSSEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred cccceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 55668899999886322 111110111122233457788888883 22 177888876532 22221111
Q ss_pred CcEEEEEECCCCCeEEEEeCCC---c--eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC------CCe
Q psy4754 69 NRVSCLQVSPDGTAFSSGSWDT---T--LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------DYT 137 (304)
Q Consensus 69 ~~V~~l~~s~d~~~l~sgs~D~---~--i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~------dg~ 137 (304)
.....+.+ +++.++.|+.+. . -.+..+|..+.+-............. ++.. .++..++.|+. -..
T Consensus 101 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccce
Confidence 11122222 567777777541 1 12456676654322211111111111 2222 45556566543 245
Q ss_pred EEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCce
Q psy4754 138 INVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKE 192 (304)
Q Consensus 138 i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~ 192 (304)
+.+||..+.+ .+..+......-..+.+ ++++++.|+.+.. -.+.+||+.+.+-
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 8889876542 22222111111122222 6678888875432 1245778776554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.2 Score=43.09 Aligned_cols=140 Identities=13% Similarity=0.071 Sum_probs=78.3
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceec---cCcccceeEEEEcCC----CcEEEEeec---C----CceE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHL---MGHENRVSCLQVSPD----GTAFSSGSW---D----TTLR 181 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~---~~h~~~v~~v~~sp~----~~~las~s~---d----~~i~ 181 (304)
...++|.|+++ ++.+..++.|+++|. .+. .+..+ .........|+++|+ +.++++-+. + ..
T Consensus 31 P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~-- 106 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR-- 106 (354)
T ss_dssp EEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE--
T ss_pred CeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE--
Confidence 45788999987 455566799999973 332 22211 122346889999997 555555442 2 23
Q ss_pred EEEeeecCC-------ceEE-EeecCceeeeeeEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCc------
Q psy4754 182 CRLFDLRAD-------KEVA-CYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKC------ 234 (304)
Q Consensus 182 i~~~d~~~~-------~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~-------------d~~i~iwd~~~~------ 234 (304)
|..++.... +.+. .+... .......++|.|||.++++-+. .+.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 345665443 1111 12211 1122467899999998887432 135555554321
Q ss_pred ---eeeEEeeccccceEEEEEcc-CCCEEEEee
Q psy4754 235 ---CRVNHLMGHENRVSCLQVSP-DGTAFSSGS 263 (304)
Q Consensus 235 ---~~~~~~~~h~~~i~~l~~sp-~g~~lasgs 263 (304)
.++. -.+|. ....++|+| +|..+++-.
T Consensus 186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp STTCCEE-EECCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCcEE-EEccC-CcceEEEeCCCCCEEEEec
Confidence 1121 23443 456899999 777777643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.31 Score=41.76 Aligned_cols=197 Identities=11% Similarity=0.039 Sum_probs=99.3
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc---ceeeceeeeEEcCC---CCEEEEEeCC------Ce
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSVS---GRLLFAGYND------YT 137 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~---~~~~~~~~~~~s~~---~~~l~sg~~d------g~ 137 (304)
.-+.++|.|+|+++++- .++.| +.++ .++........ ........++++|+ +..++.+... ..
T Consensus 32 ~P~~ia~~pdG~l~V~e-~~g~I--~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAE-RPGRI--RLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEEE-TTTEE--EEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEEe-CCCeE--EEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 45689999999966664 45654 4565 33321111110 01123568899998 5666655432 56
Q ss_pred EEEecCCcc-----ccc-eecc---CcccceeEEEEcCCCcEEEEeecCCc-----------eEEEEeeecCC-------
Q psy4754 138 INVWDSLKC-----CRV-NHLM---GHENRVSCLQVSPDGTAFSSGSWDTT-----------LRCRLFDLRAD------- 190 (304)
Q Consensus 138 i~iwd~~~~-----~~~-~~~~---~h~~~v~~v~~sp~~~~las~s~d~~-----------i~i~~~d~~~~------- 190 (304)
|..++.... +.+ ..+. +.......++|.|||.++++.+..+. -+|..++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 777775532 111 1122 11123468999999987776542211 12334444320
Q ss_pred -----ceEEEeecCceeeeeeEEEEcC-CCCEEEEEeCCCc--------EEEEeCCC----------------ceeeEEe
Q psy4754 191 -----KEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYT--------INVWDSLK----------------CCRVNHL 240 (304)
Q Consensus 191 -----~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~--------i~iwd~~~----------------~~~~~~~ 240 (304)
.....+... .-+...++|+| +|.++++-..... |.+...-. ..++..+
T Consensus 187 ~~~~~~~~~i~a~G--~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYSLG--HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEEEC--CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEEEc--CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000111111 01356789999 6777766433222 33322110 0122233
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.+......++| .+|..+++.-....|...+++.
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 22234567888 5677777766666676555443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.32 Score=41.70 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=79.0
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCcccc--ceec----cCcccceeEEEEcCC----CcEEEEee--cCCceEEEE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHL----MGHENRVSCLQVSPD----GTAFSSGS--WDTTLRCRL 184 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~----~~h~~~v~~v~~sp~----~~~las~s--~d~~i~i~~ 184 (304)
...++|.|++..+++--..|.|++++...+.. +..+ .........|+++|+ +.++++-+ .+..| .-
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v--~R 111 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI--VR 111 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE--EE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE--EE
Confidence 45789999998766654489999997543321 2111 223456789999995 54444322 23332 34
Q ss_pred eeecC----------CceEE-EeecCceeeeeeEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCc------
Q psy4754 185 FDLRA----------DKEVA-CYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKC------ 234 (304)
Q Consensus 185 ~d~~~----------~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~-------------d~~i~iwd~~~~------ 234 (304)
+.+.. .+.+. .+.. ........++|.|||.++++-++ .+.|.=.+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 44433 11111 1221 11123457999999998888432 244433443321
Q ss_pred ---eeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 235 ---CRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 235 ---~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
.++. -.||. ....++|+|+|..+++-
T Consensus 191 f~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 191 FPGSPVY-SYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp STTCCEE-EBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCeEE-eeCCC-CcceEEECCCCCEEEEe
Confidence 1121 23554 45789999998887764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.28 Score=43.08 Aligned_cols=142 Identities=16% Similarity=0.092 Sum_probs=88.4
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC----cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-------
Q psy4754 35 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH----ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK------- 103 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h----~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~------- 103 (304)
+.+|.-++.+ .+..||..++.+....+.+..- -+.|..+..+|+|++|+..+.. ++ .+..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V--~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EI--FVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EE--EEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eE--EEEEecCccccCcccc
Confidence 3455555444 4578888888754444444322 2357789999999999887643 54 455554211
Q ss_pred -----eEeEEeccce----eeceeeeEEcCC---CCEEEEEeCCCeEEEecCCccccc-eec---------cCcccceeE
Q psy4754 104 -----EVACYKKDSI----LFGATSVDFSVS---GRLLFAGYNDYTINVWDSLKCCRV-NHL---------MGHENRVSC 161 (304)
Q Consensus 104 -----~~~~~~~~~~----~~~~~~~~~s~~---~~~l~sg~~dg~i~iwd~~~~~~~-~~~---------~~h~~~v~~ 161 (304)
+...++.... ...+..+.|+|- +..+++-..|+.|++||+...... ..+ ......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1223332211 124678889985 558999999999999998752211 011 122357889
Q ss_pred EEEcCCCcEEEEee--cCCce
Q psy4754 162 LQVSPDGTAFSSGS--WDTTL 180 (304)
Q Consensus 162 v~~sp~~~~las~s--~d~~i 180 (304)
++|.+++..+...+ ..|.|
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEE
T ss_pred EEEcCCCcEEEEEecCCCCCE
Confidence 99999988776644 66765
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.46 Score=39.70 Aligned_cols=216 Identities=11% Similarity=0.046 Sum_probs=99.4
Q ss_pred EEEEeeCCCcEEEEeCCCceee-eeecCCcCcEEEEEECCCCCeEEEEeC-------CCceE--EEEeeeCCCeeEeEEe
Q psy4754 40 LLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGTAFSSGSW-------DTTLR--CRLFDLRADKEVACYK 109 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~~~l~sgs~-------D~~i~--~~~wd~~~~~~~~~~~ 109 (304)
+++.|+ ..+..||+.+++=. ..+.........-....+++.++.|+. ..... +..+|..+.+-.....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 445565 46899998876422 222211122223334457788888874 11111 4567766543211111
Q ss_pred ccceeeceeeeEEcCCCCEEEEEeCC--------CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeec-CC
Q psy4754 110 KDSILFGATSVDFSVSGRLLFAGYND--------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSW-DT 178 (304)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~~l~sg~~d--------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~ 178 (304)
........ ++.. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+. -+++.++.|+. +.
T Consensus 85 ~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred CCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence 11111111 2222 245555555522 458888876532 2222221111112222 36678888876 22
Q ss_pred c---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCce--eeEEeeccccceE
Q psy4754 179 T---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCC--RVNHLMGHENRVS 248 (304)
Q Consensus 179 ~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-----~i~iwd~~~~~--~~~~~~~h~~~i~ 248 (304)
. -.+..||..+.+-...-...........+. -++++++.|+.++ .+.+||..+.+ .+..+........
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 1 124677877654332211111111112222 2667777776543 47788876642 2222211111222
Q ss_pred EEEEccCCCEEEEeecC
Q psy4754 249 CLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D 265 (304)
++. -+++.++.|+.+
T Consensus 239 ~~~--~~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVS--LVGTLYAIGGFA 253 (315)
T ss_dssp EEE--ETTEEEEEEEEE
T ss_pred EEE--ECCEEEEECCcc
Confidence 222 367888888764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.27 Score=39.20 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=83.0
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc--------eeEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR--------VSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
...++|+|++. |++. .+|.+.-.+..+.+. ....+-... -.++.|.|+|.+.++ .|+.+ .-++..
T Consensus 43 ~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~i--yr~~pP 115 (236)
T 1tl2_A 43 FKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKL--YKASPP 115 (236)
T ss_dssp CSEEEECTTSC-EEEE-ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEE--EEESCC
T ss_pred ceeEEECCCcc-EEEE-eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEE--EEeCCC
Confidence 45789999887 4444 678777777544221 111111112 378899999998887 46765 334432
Q ss_pred CCceEE------EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce------eeEEee-ccccceEEEEEccC
Q psy4754 189 ADKEVA------CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC------RVNHLM-GHENRVSCLQVSPD 255 (304)
Q Consensus 189 ~~~~~~------~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~------~~~~~~-~h~~~i~~l~~sp~ 255 (304)
+...-. ++.... -..+..+.|.|+|.+.+.. |+.+.-....+.. ....+. +.-..-..+.|.|+
T Consensus 116 ~~~~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccCC-CCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 211100 000000 0135789999999999888 6675433322111 011111 22234455779999
Q ss_pred CCEEEEeecCCee-eeccccccchhheee
Q psy4754 256 GTAFSSGSWDTTL-RDEESKNRYMQYLLR 283 (304)
Q Consensus 256 g~~lasgs~D~~i-~~~~~~~~~~~~~~~ 283 (304)
|..++.. ++.+ +.-....+..-|+.+
T Consensus 193 G~l~~v~--~g~~Y~~~~p~~~~~~~~~~ 219 (236)
T 1tl2_A 193 GTLFGVQ--GGKFYEDYPPSYAYDNWLAR 219 (236)
T ss_dssp SCEEEEE--TTEEEEESCCCSTTCCHHHH
T ss_pred CcEEEEe--CCeEEecCCccccCcchhhh
Confidence 9888776 6643 333333344444433
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.34 Score=41.28 Aligned_cols=40 Identities=5% Similarity=-0.069 Sum_probs=21.4
Q ss_pred cEEEEeCCC--ceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 225 TINVWDSLK--CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 225 ~i~iwd~~~--~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
.+.+||..+ ...+..+......-.+ ...+++.++.|+.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCC
Confidence 467888764 3344433322222222 334778888888664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.46 Score=40.70 Aligned_cols=145 Identities=11% Similarity=0.067 Sum_probs=76.9
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceec----cCcccceeEEEEcCC----CcEEEEeecC---C--ceE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHL----MGHENRVSCLQVSPD----GTAFSSGSWD---T--TLR 181 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~----~~h~~~v~~v~~sp~----~~~las~s~d---~--~i~ 181 (304)
...++|.|+++.++.+...|.|++++..... .+..+ .........|+++|+ +..+++-+.. + .-.
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~ 99 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA 99 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence 4678999999834455667999999743211 11111 112345689999995 5555543321 1 122
Q ss_pred EEEeeecCC----ceEEE-eecC----ceeeeeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCce----
Q psy4754 182 CRLFDLRAD----KEVAC-YKKD----SILFGATSVDFSVSGRLLFAGYND-------------YTINVWDSLKCC---- 235 (304)
Q Consensus 182 i~~~d~~~~----~~~~~-~~~~----~~~~~~~~~~~s~~g~~l~sg~~d-------------~~i~iwd~~~~~---- 235 (304)
|..+++... ..... +... ........++|.|||.++++-+.. ++|.-++.....
T Consensus 100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~n 179 (353)
T 2g8s_A 100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDN 179 (353)
T ss_dssp EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTC
T ss_pred EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCC
Confidence 344555322 11111 1110 011123579999999877775432 356555544210
Q ss_pred --------eeEEe-eccccceEEEEEcc-CCCEEEEe
Q psy4754 236 --------RVNHL-MGHENRVSCLQVSP-DGTAFSSG 262 (304)
Q Consensus 236 --------~~~~~-~~h~~~i~~l~~sp-~g~~lasg 262 (304)
....+ .+|. ....++|.| +|..+++-
T Consensus 180 pf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 180 PFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp TTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEE
T ss_pred CCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEe
Confidence 11111 2443 568899999 67766653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=1.2 Score=41.92 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=98.7
Q ss_pred CCCCEEEEeeCC----CcEEEEeCCCce--eee-e-----ecCCcCcEEEEEECCCCCeEEEEeCCCc----eEEEEeee
Q psy4754 36 VSGRLLFAGYND----YTINVWDSLKCC--RVN-H-----LMGHENRVSCLQVSPDGTAFSSGSWDTT----LRCRLFDL 99 (304)
Q Consensus 36 ~~g~~l~tg~~d----g~v~iwd~~~~~--~~~-~-----~~~h~~~V~~l~~s~d~~~l~sgs~D~~----i~~~~wd~ 99 (304)
.++.+++.||.+ ..+.+||+.+++ .+. . +......-..+.+..+++.++.||.+.. -.++.+|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888854 468889887653 222 1 1111112223333326778888876442 12467777
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC--eEEEecCCccc--ccee---ccCcccceeEEEEcCC-CcEE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCC--RVNH---LMGHENRVSCLQVSPD-GTAF 171 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg--~i~iwd~~~~~--~~~~---~~~h~~~v~~v~~sp~-~~~l 171 (304)
.+.+-...-........ .++..-.++..++.|+.++ .+.+||..+.+ .+.. .......-.++.+..+ ++.+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 65432211111111111 2233323677777776543 68899876542 2221 1111122233555555 7788
Q ss_pred EEeecC--C---ceEEEEeeecCCc------eEEEeec-CceeeeeeEEEEcCCCCEEEEEeC--------CCcEEEEeC
Q psy4754 172 SSGSWD--T---TLRCRLFDLRADK------EVACYKK-DSILFGATSVDFSVSGRLLFAGYN--------DYTINVWDS 231 (304)
Q Consensus 172 as~s~d--~---~i~i~~~d~~~~~------~~~~~~~-~~~~~~~~~~~~s~~g~~l~sg~~--------d~~i~iwd~ 231 (304)
+.|+.+ + .-.+..||+.+.+ ....... ...... .+++...++++++.|+. ...+.+||.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 888762 2 1235688888766 2111110 000011 12333344777777763 346889998
Q ss_pred CCce
Q psy4754 232 LKCC 235 (304)
Q Consensus 232 ~~~~ 235 (304)
.+.+
T Consensus 634 ~t~~ 637 (695)
T 2zwa_A 634 LSET 637 (695)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.22 Score=39.71 Aligned_cols=139 Identities=14% Similarity=0.028 Sum_probs=75.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee------eeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV------NHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~------~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.++.++|+|+|.+.+. .+|.+.-.+..+++.. ..+- +... ..++.|.|+|.+.++ .|+.| .-++-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~i--yr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKL--YKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEE--EEESC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEE--EEeCC
Confidence 4789999999987766 7787777776542111 1110 1111 478899999988777 46765 23443
Q ss_pred CC-CeeEeEEecccee------eceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-----ceecc--CcccceeEEEEc
Q psy4754 100 RA-DKEVACYKKDSIL------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-----VNHLM--GHENRVSCLQVS 165 (304)
Q Consensus 100 ~~-~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~--~h~~~v~~v~~s 165 (304)
.+ +..-.... ... ..+..+.+.|+|.+.+.. |+.+.-+...+... ..+.. +.-..-.-+.|.
T Consensus 115 P~~~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIAR--ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHH--SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceecc--ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 22 11111000 000 124678899999765555 77765443221110 01111 111223446689
Q ss_pred CCCcEEEEeecCCc
Q psy4754 166 PDGTAFSSGSWDTT 179 (304)
Q Consensus 166 p~~~~las~s~d~~ 179 (304)
|++.+++.. ++.
T Consensus 191 ~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 191 SVGTLFGVQ--GGK 202 (236)
T ss_dssp TTSCEEEEE--TTE
T ss_pred CCCcEEEEe--CCe
Confidence 999877765 664
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.98 Score=39.71 Aligned_cols=144 Identities=19% Similarity=0.211 Sum_probs=83.9
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-eee-ceeeeEEcCCCCEEEEEeCCCeEEEecCCccc---------
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILF-GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--------- 147 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-~~~-~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--------- 147 (304)
++..++.+- ++.+ |.-++..+...+.++... ..+ .+..+..+|+|.++|..+ +..|.|-.+..+.
T Consensus 31 n~t~i~~a~-~n~i--R~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFIQ-DNII--RWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEEE-TTEE--EEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEEE-CCEE--EEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 344444332 3443 334444333444444331 112 356788999999988865 5688888765221
Q ss_pred -cc--eecc-C-----cccceeEEEEcCCC---cEEEEeecCCceEEEEeeecCC--ceEEEeecCc-------eeeeee
Q psy4754 148 -RV--NHLM-G-----HENRVSCLQVSPDG---TAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDS-------ILFGAT 206 (304)
Q Consensus 148 -~~--~~~~-~-----h~~~v~~v~~sp~~---~~las~s~d~~i~i~~~d~~~~--~~~~~~~~~~-------~~~~~~ 206 (304)
.+ +.+. + ...+|..+.|+|-+ ..+++-..|+.| ++||+... ++. .++... ....+.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~I--r~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTI--TMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCE--EEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEE--EEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 01 1111 1 24679999999954 468888889885 78998652 222 232111 113478
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEEE
Q psy4754 207 SVDFSVSGRLLFAGY--NDYTINVW 229 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~--~d~~i~iw 229 (304)
+++|++++-.|-..+ .+|.|+-.
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999887665544 77888643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.71 E-value=1 Score=40.01 Aligned_cols=104 Identities=9% Similarity=0.088 Sum_probs=57.0
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceeccC------cccceeEEEEcCC----CcEEEEeec------CC
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMG------HENRVSCLQVSPD----GTAFSSGSW------DT 178 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~------h~~~v~~v~~sp~----~~~las~s~------d~ 178 (304)
...++|.|+++++++-...+.|++++..++. .+..+.. ....+..|+|+|+ +.++++-+. +.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 4578899999866664434578888754332 1222211 2355779999994 555554432 11
Q ss_pred ----ceEEEEeeecCC-------ceEEE-eecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 179 ----TLRCRLFDLRAD-------KEVAC-YKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 179 ----~i~i~~~d~~~~-------~~~~~-~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
.-.|..++.... +.+.. +... .......++|.|||.++++-+
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 112334544321 11211 2211 112357899999999888754
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.89 Score=37.94 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=98.2
Q ss_pred CEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCC----C---ce--EEEEeeeCCCeeEeEE
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWD----T---TL--RCRLFDLRADKEVACY 108 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D----~---~i--~~~~wd~~~~~~~~~~ 108 (304)
.+++.|+.+ +..||+.+.+-.. .+.........-....+++.++.|+.. + .+ .+..+|..+.+-....
T Consensus 17 ~i~~~GG~~--~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDTA--AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSSE--EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhccccc--eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 345566543 8899988765322 121111112223344567788888731 1 11 1456776554322111
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCC-------CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCC-
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYND-------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDT- 178 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~d-------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~- 178 (304)
........ .++.. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+. .++++++.|+.+.
T Consensus 95 ~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 95 PLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDD 170 (318)
T ss_dssp CBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESS
T ss_pred CCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCC
Confidence 11111111 12222 245666666543 357788876532 2222211111111222 3677888887521
Q ss_pred ---ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeeccccceE
Q psy4754 179 ---TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVS 248 (304)
Q Consensus 179 ---~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~~i~ 248 (304)
.-.+..||..+.+-...-...........+. -++++++.|+.+ ..+.+||..+.+ .+..+........
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 248 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS 248 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE
Confidence 1124678887765433211111111112222 366777777543 346778876532 2222221111112
Q ss_pred EEEEccCCCEEEEeecCC
Q psy4754 249 CLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~ 266 (304)
++ ..+++.++.|+.+.
T Consensus 249 ~~--~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 249 LV--SLAGSLYAIGGFAM 264 (318)
T ss_dssp EE--EETTEEEEECCBCC
T ss_pred EE--EECCEEEEECCeec
Confidence 22 23678888887653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.98 Score=42.59 Aligned_cols=188 Identities=11% Similarity=-0.001 Sum_probs=92.1
Q ss_pred ceeEEeeccccceEeee-e-----ccccccceeEEEEcCCCCEEEEeeCCC------cEEEEeCCCce--eeeeecCCcC
Q psy4754 4 NHCRLFDLRADKEVACY-K-----KDSILFGATSVDFSVSGRLLFAGYNDY------TINVWDSLKCC--RVNHLMGHEN 69 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~-~-----~~~~~~~i~~~~~~~~g~~l~tg~~dg------~v~iwd~~~~~--~~~~~~~h~~ 69 (304)
+.+-+||+.+++-.... + .......-.++.+..++.+++.||.++ .+.+||+.+.+ .+..+.....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 35778898887432211 1 111111123333332778888887643 57889987643 2222211111
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe---ccceeeceeeeEEcCC-CCEEEEEeC--C-----CeE
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK---KDSILFGATSVDFSVS-GRLLFAGYN--D-----YTI 138 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~---~~~~~~~~~~~~~s~~-~~~l~sg~~--d-----g~i 138 (304)
.- +.+...+++.++.||.+..-.+..||..+.+-..... ..........+.+..+ +..++.|+. + ..+
T Consensus 492 ~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v 570 (695)
T 2zwa_A 492 RH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKA 570 (695)
T ss_dssp SC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEE
T ss_pred cc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcE
Confidence 11 2233247888888887553235788887654221111 0011112233455554 555666654 2 468
Q ss_pred EEecCCccc--------cceecc-CcccceeEEEEcCCCcEEEEeecCCc------eEEEEeeecCCceE
Q psy4754 139 NVWDSLKCC--------RVNHLM-GHENRVSCLQVSPDGTAFSSGSWDTT------LRCRLFDLRADKEV 193 (304)
Q Consensus 139 ~iwd~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~las~s~d~~------i~i~~~d~~~~~~~ 193 (304)
.+||+.+.+ .+.... .....- +++...++++++.|+.+.. -.+.+||+.+.+..
T Consensus 571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 571 IIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 888876654 111110 011111 2233334778888885421 12467888776543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.65 E-value=2.2 Score=37.85 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=34.7
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee--eeeecC------CcCcEEEEEECCC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLMG------HENRVSCLQVSPD 79 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~--~~~~~~------h~~~V~~l~~s~d 79 (304)
-.+++|.|+|.++++-...+.|++++..++.. +..+.. .......|+|+||
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 57899999999887764445798888654432 222221 2456779999995
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.41 E-value=2 Score=36.31 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=28.9
Q ss_pred CCCEEEEeeC-C---------CcEEEEeCCCce--eeeeec-CCcCcEEEEEECCCCCeEEEEeCC
Q psy4754 37 SGRLLFAGYN-D---------YTINVWDSLKCC--RVNHLM-GHENRVSCLQVSPDGTAFSSGSWD 89 (304)
Q Consensus 37 ~g~~l~tg~~-d---------g~v~iwd~~~~~--~~~~~~-~h~~~V~~l~~s~d~~~l~sgs~D 89 (304)
++.+++.|+. + ..+.+||+.+.+ .+..+. .....-.++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5777788876 2 468899987653 222222 1111122222 467788888765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.36 E-value=2 Score=35.92 Aligned_cols=197 Identities=8% Similarity=-0.011 Sum_probs=94.5
Q ss_pred CCCCEEEEe--eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC------------ceEEEEeeeCC
Q psy4754 36 VSGRLLFAG--YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT------------TLRCRLFDLRA 101 (304)
Q Consensus 36 ~~g~~l~tg--~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~------------~i~~~~wd~~~ 101 (304)
++|..++-. ..++.+..-+.. |...+.+.. +.+ --+++++++|+=+.... .-.++..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~--~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN--DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE--EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC--Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 455554433 234544444443 322333321 223 34577888776554322 12234555554
Q ss_pred CeeEeEEeccceeeceeeeEEcCCCCEEEEEe--C--CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-
Q psy4754 102 DKEVACYKKDSILFGATSVDFSVSGRLLFAGY--N--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW- 176 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~--~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~- 176 (304)
.+... +... ....+++++++++-.. . ...|..-++.. .....+..+.. .+++|+++.|.-.+.
T Consensus 98 ~~~~~-l~~~------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g 165 (302)
T 3s25_A 98 HGSTV-LDPD------PCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPK 165 (302)
T ss_dssp CCCEE-EECS------CEEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTT
T ss_pred CcceE-eecC------CccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCC
Confidence 43221 1111 2346788888888776 3 34455555543 22333333322 345778877775554
Q ss_pred CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--YTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d--~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
... |...++........+. .. ....+.|++.+|+-...+ ..|..-++.... ...+.. ..+. .|+|
T Consensus 166 ~~~--Iy~~~l~g~~~~~l~~-~~-----~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~--~~~~ 232 (302)
T 3s25_A 166 NGQ--LYRYDTASQSEALFYD-CN-----CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANIE--HYNV 232 (302)
T ss_dssp TCC--EEEEETTTTEEEEEEC-SC-----EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCEE--EEEE
T ss_pred Cce--EEEEECCCCCEEEEeC-CC-----ccceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCcc--eEEE
Confidence 334 4566666554433332 11 122356888887765433 245444544322 222322 2332 3677
Q ss_pred CCCEEEEe
Q psy4754 255 DGTAFSSG 262 (304)
Q Consensus 255 ~g~~lasg 262 (304)
++..|.-+
T Consensus 233 ~g~~Iy~~ 240 (302)
T 3s25_A 233 YGSLIFYQ 240 (302)
T ss_dssp ETTEEEEE
T ss_pred CCCEEEEE
Confidence 77766543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.64 Score=42.30 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=78.1
Q ss_pred ceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCce-----------EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 158 RVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE-----------VACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
+...+.++|||++++.++. +.++ .++|++.... ...-.. ....+....+|.++|.-+.+-.-|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptv--tV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTC--SMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBE--EEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeE--EEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecce
Confidence 4557899999999887665 5554 5788764211 001111 11235678899999977777778999
Q ss_pred EEEEeCCCc----------eeeEEeeccccceEEEE-----EccCCCEEEEe---ecCCee----------eeccccccc
Q psy4754 226 INVWDSLKC----------CRVNHLMGHENRVSCLQ-----VSPDGTAFSSG---SWDTTL----------RDEESKNRY 277 (304)
Q Consensus 226 i~iwd~~~~----------~~~~~~~~h~~~i~~l~-----~sp~g~~lasg---s~D~~i----------~~~~~~~~~ 277 (304)
|--|++.+. ..+..+.-|.++-.-.+ -.|||++|++. |.|+.+ +|.|...+.
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 999997653 34555666665543322 26889999997 578776 355555555
Q ss_pred hhheee
Q psy4754 278 MQYLLR 283 (304)
Q Consensus 278 ~~~~~~ 283 (304)
|..+..
T Consensus 481 M~lv~D 486 (638)
T 3sbq_A 481 MKLVHD 486 (638)
T ss_dssp CEEEEE
T ss_pred eEEEec
Confidence 544444
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=5.3 Score=35.34 Aligned_cols=254 Identities=8% Similarity=0.053 Sum_probs=145.5
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 83 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 83 (304)
..|-|-|+..++.... +....-+.-.+|..+.+|--. ..++.|+|+++.+.++.+.-.. .|.-=.|-.+.. |
T Consensus 48 ~~vvIiDl~~~~~~~r-----rpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~-l 119 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-V 119 (494)
T ss_dssp CEEEEEETTSTTSCEE-----EECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTE-E
T ss_pred CeEEEEECCCCCccee-----cccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCe-E
Confidence 3567777777543211 112234567789888887664 6799999999988887765433 454456654433 3
Q ss_pred EEEeCCCceEEEEeeeCC-CeeEeEEeccceeec--eeeeEEcCCCCEEEEEe-------CCCeEEEecCCccccceecc
Q psy4754 84 SSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFG--ATSVDFSVSGRLLFAGY-------NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~ 153 (304)
+-.. +.. |.-|++.. ..+...+..+..+.. +.....+++.++++..+ -.|.+.+|..+.. .-+.+.
T Consensus 120 ~lVT-~ta--VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie 195 (494)
T 1bpo_A 120 ALVT-DNA--VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 195 (494)
T ss_dssp EEEC-SSE--EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC
T ss_pred EEEc-CCe--eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe
Confidence 2222 334 46799864 345555655443322 34555678888776432 2467788875532 233456
Q ss_pred CcccceeEEEEcCC---CcEEEEeecCC-ceEEEEeeecCC---c-----e-EEE-eecCceeeeeeEEEEcCCCCEEEE
Q psy4754 154 GHENRVSCLQVSPD---GTAFSSGSWDT-TLRCRLFDLRAD---K-----E-VAC-YKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 154 ~h~~~v~~v~~sp~---~~~las~s~d~-~i~i~~~d~~~~---~-----~-~~~-~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
||-..-..+.+..+ .+.|+.+.... -.++.+.++... . . +.. +..+...--..++..++.-..+..
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 77544433333221 12344444321 023456666432 1 0 000 111111111346777888888888
Q ss_pred EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeee
Q psy4754 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
-..-|-|++||+.++..+..-+=-..+|..-+..+...-++.....|.|-
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 88889999999999998866555566777766666656666666666553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.95 E-value=12 Score=38.32 Aligned_cols=249 Identities=8% Similarity=0.039 Sum_probs=127.8
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AF 83 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l 83 (304)
+|-|-|+..++... .+....-+.-.+|..+.+|--. ..++.|+|+.+.+.++.+.- ..+|.-=.|-.+.. -|
T Consensus 49 ~vvIidl~~~~~~~-----rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPI-----RRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVAL 121 (1630)
T ss_pred eEEEEECCCCCCcc-----cccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEE
Confidence 46666666654321 1112234566688888777654 67999999988777766543 34565557755444 34
Q ss_pred EEEeCCCceEEEEeeeCC-CeeEeEEeccceee--ceeeeEEcCCCCEEEEEe-------CCCeEEEecCCccccceecc
Q psy4754 84 SSGSWDTTLRCRLFDLRA-DKEVACYKKDSILF--GATSVDFSVSGRLLFAGY-------NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~--~~~~~~~s~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~ 153 (304)
+|. .. |.-|++.. ..+...+..+..+. .+.....+++.++++..+ -.|.+.+|..... ..+.+.
T Consensus 122 VT~---~a--VyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie 195 (1630)
T 1xi4_A 122 VTD---NA--VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 195 (1630)
T ss_pred EcC---Ce--EEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh
Confidence 443 23 46799864 23333333322221 234455677788766432 3578888875432 222345
Q ss_pred CcccceeEEEEc--C-CCcEEEEeecC--CceEEEEeeecCC-ceEEEe---------ecCceeeeeeEEEEcCCCCEEE
Q psy4754 154 GHENRVSCLQVS--P-DGTAFSSGSWD--TTLRCRLFDLRAD-KEVACY---------KKDSILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 154 ~h~~~v~~v~~s--p-~~~~las~s~d--~~i~i~~~d~~~~-~~~~~~---------~~~~~~~~~~~~~~s~~g~~l~ 218 (304)
||-+.-..+.+. + ..+.|+.+... | .++.+.++... ..-..+ +.....--+.++..++.-..+.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g-~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAG-GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCC-ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 665443333221 1 12233333221 1 13456665332 000111 1110001124566677777777
Q ss_pred EEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 219 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 219 sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.-..-|-|++||+.++..+..-+-...+|...+..+...-++..-..|.
T Consensus 275 ~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~ 323 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 323 (1630)
T ss_pred EEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce
Confidence 7777899999999998776433323445554444443333333333343
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=91.89 E-value=6.4 Score=34.83 Aligned_cols=148 Identities=10% Similarity=0.130 Sum_probs=85.2
Q ss_pred CceeEEeecccc-ceEeeeeccccccc--eeEEEEcCCCCEEE-Eee------CCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLRAD-KEVACYKKDSILFG--ATSVDFSVSGRLLF-AGY------NDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~-~~~~~~~~~~~~~~--i~~~~~~~~g~~l~-tg~------~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
+..|.-|++.++ .+...+.++....+ |..-..+++.++++ +|= -.|.+.+|+.+.+ ..+.++||.+...
T Consensus 124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (494)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence 456888888754 34445555433333 66666678888765 332 3488999998764 4455788876655
Q ss_pred EEEECCCC---CeEEEEeCC-CceEEEEeeeCCC---eeEe---E----EeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 73 CLQVSPDG---TAFSSGSWD-TTLRCRLFDLRAD---KEVA---C----YKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 73 ~l~~s~d~---~~l~sgs~D-~~i~~~~wd~~~~---~~~~---~----~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
.+.+..+. +.+.-+... ..-++.+.++... .+.. . +..+....=..++.+++....++.-+.-|.+
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i 282 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence 44443211 123323221 0124566777432 1100 0 0111000012356677888889999999999
Q ss_pred EEecCCcccccee
Q psy4754 139 NVWDSLKCCRVNH 151 (304)
Q Consensus 139 ~iwd~~~~~~~~~ 151 (304)
.+||+.++.++..
T Consensus 283 ~lyDleTgt~i~~ 295 (494)
T 1bpo_A 283 HLYDLETGTCIYM 295 (494)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEecccceeeee
Confidence 9999999887654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=91.24 E-value=13 Score=37.21 Aligned_cols=244 Identities=13% Similarity=0.083 Sum_probs=125.0
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee--eeecCCcCcEEEEEECCC--
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPD-- 79 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~d-- 79 (304)
+.||+.+...++....+..+. ...|..++.. +.+++.++ .+.+.++.+..++.. ... .-...|.|+++.|.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~-~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQ-AKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGD 566 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTT-CCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSS
T ss_pred CEEEEEECCCCeEEEEEECCC-CCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCC
Confidence 457888877655444443322 2346666654 34555554 678888887654321 111 12468999999863
Q ss_pred ----CCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccc--eeeceeeeEEcCCCCEEEEEeCCCeEEEecC--Cccccce
Q psy4754 80 ----GTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVN 150 (304)
Q Consensus 80 ----~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~--~~~~~~~ 150 (304)
+++++.|.| |+++ +++++..-+.+....... ...++.-+.+ ....++..|..||.+..+.+ .+++...
T Consensus 567 ~~~~s~~~aVg~~~d~tv--~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d 643 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISA--RILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSD 643 (1158)
T ss_dssp STTCCSEEEEEETTTTEE--EEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEE
T ss_pred CcccccEEEEEECCCCEE--EEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCcccc
Confidence 368999998 9885 678887655543322211 1111222223 23457888999999876643 3332211
Q ss_pred ---eccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCceEE-EeecCceeeeeeEEEEcCC--CCEEEEEeCC
Q psy4754 151 ---HLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVA-CYKKDSILFGATSVDFSVS--GRLLFAGYND 223 (304)
Q Consensus 151 ---~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~~--g~~l~sg~~d 223 (304)
.+.| ..++.-..+...+. .+..+| +..- .++--. ++... ....... -....|+.. .+-++.. .+
T Consensus 644 ~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~--liy~~~-~~l~~s~l~~~~v---~~~~~F~se~~~~g~v~~-~~ 714 (1158)
T 3ei3_A 644 RKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPT--VIYSSN-HKLVFSNVNLKEV---NYMCPLNSDGYPDSLALA-NN 714 (1158)
T ss_dssp EEEEECC-SSCCEEEEEESSSCEEEEEES-SSCE--EEEESS-SSEEEEEBSSSCC---CEEEEECCSSSTTEEEEE-CS
T ss_pred ceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCE--EEEEcC-CceEEeccChHHh---ceEeccCcccCCCcEEEE-cC
Confidence 1223 23444334443333 333333 3432 233222 22111 1111110 123345432 2334433 35
Q ss_pred CcEEEEeCCCcee--eEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 224 YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 224 ~~i~iwd~~~~~~--~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
+.++|..+.+-.. ++++. -...+..++++|+.+.++.+..+
T Consensus 715 ~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 715 STLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp SCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred CceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEe
Confidence 5688886543222 23332 23578899999988877665543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.22 E-value=8.6 Score=34.20 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=59.4
Q ss_pred eeeeEEcCCCC-EEEEEeCCCeEEEecCCcc---ccceec---c------CcccceeEEEEcCC----CcEEEEeecCC-
Q psy4754 117 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKC---CRVNHL---M------GHENRVSCLQVSPD----GTAFSSGSWDT- 178 (304)
Q Consensus 117 ~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~---~~~~~~---~------~h~~~v~~v~~sp~----~~~las~s~d~- 178 (304)
...++|.|++. .++.+...|.|++++.... ..+..+ . ........|+|+|+ +.++++-+.+.
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 45788999986 4556678899999974321 112111 1 11356789999996 55555443211
Q ss_pred ---------ceEEEEeeecC----------CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 179 ---------TLRCRLFDLRA----------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 179 ---------~i~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
...|.-|.+.. .+.+..............++|.|||.++++.++.
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 11222344321 1223332211112235789999999988875543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=89.73 E-value=18 Score=36.28 Aligned_cols=97 Identities=8% Similarity=0.010 Sum_probs=55.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCC------CCEEEEeeC-CCcEEEEeCCCceeeeeecC-CcCcEEEEEE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVS------GRLLFAGYN-DYTINVWDSLKCCRVNHLMG-HENRVSCLQV 76 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~------g~~l~tg~~-dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~ 76 (304)
.+-++++..++.......+ ....|+|+++.|. +++++.|.. |++++|+++.+.+.+....- -.....++.+
T Consensus 533 ~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l 611 (1158)
T 3ei3_A 533 ALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILM 611 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEE
T ss_pred EEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEE
Confidence 4555555544322221212 2345999999763 369999986 99999999987655433211 1123344433
Q ss_pred CC--CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 77 SP--DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 77 s~--d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.. ..-+|..|-.||.+....+|..++
T Consensus 612 ~~~~~~~~L~igl~dG~l~~~~~d~~tg 639 (1158)
T 3ei3_A 612 TTFESSHYLLCALGDGALFYFGLNIETG 639 (1158)
T ss_dssp EEETTEEEEEEEETTSEEEEEEECTTTC
T ss_pred EEeCCCcEEEEEeCCCeEEEEEEcCCCC
Confidence 32 234778888888864444554443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.64 E-value=1.4 Score=37.60 Aligned_cols=113 Identities=9% Similarity=0.089 Sum_probs=58.3
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeE--EcCCCCEEEEE--eCCCeEEEecCCccccceeccC---
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD--FSVSGRLLFAG--YNDYTINVWDSLKCCRVNHLMG--- 154 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~--- 154 (304)
.++.++.|+.+ .-.|..+++..+.++... ..+..... -.+.+..++.+ +.||.+..++..++...-.+..
T Consensus 12 ~V~v~t~dG~l--~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 12 ILIAADVEGGL--HAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEETTSCE--EEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEEeCCCeE--EEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 56667777775 456767777777665431 00100000 00122244444 5788888888766532211110
Q ss_pred -cccceeE---EEE-c----CCCcEEEEeecCCceEEEEeeecCCceEEEeecC
Q psy4754 155 -HENRVSC---LQV-S----PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199 (304)
Q Consensus 155 -h~~~v~~---v~~-s----p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~ 199 (304)
...++.. ..+ . -.+..+.+|+.++.+ .-.|+++++.+-.+...
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l--~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIM--YTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEE--EEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEE--EEEECCCCcEEEEEecC
Confidence 1111211 000 0 034578888888885 46788888877666543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=86.67 E-value=15 Score=31.73 Aligned_cols=232 Identities=12% Similarity=0.123 Sum_probs=127.5
Q ss_pred eeEEEE-cCCCCEEEEeeC--C---CcEEEEeCCC-------ceee-eeecC-----CcCcEEEEEECCCCCeEE--EEe
Q psy4754 29 ATSVDF-SVSGRLLFAGYN--D---YTINVWDSLK-------CCRV-NHLMG-----HENRVSCLQVSPDGTAFS--SGS 87 (304)
Q Consensus 29 i~~~~~-~~~g~~l~tg~~--d---g~v~iwd~~~-------~~~~-~~~~~-----h~~~V~~l~~s~d~~~l~--sgs 87 (304)
.+.++. +.+|+++++-=. + -++-..+..+ .-.+ ..+.. +--.|..+.+-+.+++-+ +|-
T Consensus 28 P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLDtG~ 107 (381)
T 3q6k_A 28 STAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVDIGS 107 (381)
T ss_dssp CCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEECSS
T ss_pred eeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEeCCC
Confidence 356777 677787776522 2 2444444321 1122 33322 224677888877766432 332
Q ss_pred C-----------CCceEEEEeeeCCC--eeEeEEeccceee----ceeeeEEc---CC----CCEEEEEe-CCCeEEEec
Q psy4754 88 W-----------DTTLRCRLFDLRAD--KEVACYKKDSILF----GATSVDFS---VS----GRLLFAGY-NDYTINVWD 142 (304)
Q Consensus 88 ~-----------D~~i~~~~wd~~~~--~~~~~~~~~~~~~----~~~~~~~s---~~----~~~l~sg~-~dg~i~iwd 142 (304)
- -+.-++..||+.+. +.++.+....... ....+.+. ++ +.+++... ..+.|.++|
T Consensus 108 ~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVyd 187 (381)
T 3q6k_A 108 VEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYD 187 (381)
T ss_dssp CSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEE
T ss_pred cCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEE
Confidence 1 22336789999999 8888876432111 13445555 22 45666665 378899999
Q ss_pred CCccccceec--------------cCc----ccceeEEEEcCC----CcEEEEeecCCceEEEEeeecC-----C---ce
Q psy4754 143 SLKCCRVNHL--------------MGH----ENRVSCLQVSPD----GTAFSSGSWDTTLRCRLFDLRA-----D---KE 192 (304)
Q Consensus 143 ~~~~~~~~~~--------------~~h----~~~v~~v~~sp~----~~~las~s~d~~i~i~~~d~~~-----~---~~ 192 (304)
+.+++..+.. .|. ...|..++++|+ ++.+.-+...+. ++|.+.+ . ..
T Consensus 188 l~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~ 264 (381)
T 3q6k_A 188 HKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLN 264 (381)
T ss_dssp TTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCC
T ss_pred CCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhc
Confidence 8875432211 111 246788999998 677776665554 3454321 1 11
Q ss_pred EEEeecCceeeeeeEEEEc-CCCCEEEEEeCCCcEEEEeCCC-c---eeeEEee--ccccceEEEEEccCCCEEEEee
Q psy4754 193 VACYKKDSILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLK-C---CRVNHLM--GHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~s-~~g~~l~sg~~d~~i~iwd~~~-~---~~~~~~~--~h~~~i~~l~~sp~g~~lasgs 263 (304)
+..+-...........++. .+|.++++--+...|..|+..+ . ..+..+. ..-..+..+++.++|...+..+
T Consensus 265 v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 265 PELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 2211111101122355675 6788888888888999999765 1 1112221 1234677888877777666654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=85.65 E-value=14 Score=30.32 Aligned_cols=222 Identities=9% Similarity=-0.002 Sum_probs=103.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.|..++......+++ . ||.|..|-....-.+..-..-...|..++...+...++ . |+.+ +.|-.....++..
T Consensus 25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v--~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEV--IAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEE--EEEECCTTSTTCC
T ss_pred CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEE--EEeeCCCCCCCCC
Confidence 366676544333333 4 89999998654322211111123577777665433333 3 7774 5676554333221
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
... ....+..++.. ..+.+.-. +|.|..|-......+.........|..++...+...+. . |+.+ +.|-.
T Consensus 97 P~~--~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v--~~wG~ 166 (282)
T 3qhy_B 97 PAE--ARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGV--IAWGD 166 (282)
T ss_dssp CGG--GSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEE--EEEEC
T ss_pred Ccc--cCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEE--EEecC
Confidence 111 01123344333 34445555 89999996443222211111224566666554432222 2 5664 44532
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.....+.. +. .....+..++......+ +. .|+.+..|-....-.+..-..-...|..|+...+...+++ |+.
T Consensus 167 n~~gqlg~-p~-~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~ 238 (282)
T 3qhy_B 167 NYFGQTTV-PA-EAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGK 238 (282)
T ss_dssp CTTSTTSC-CG-GGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTE
T ss_pred CCCCCCCC-ce-ecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCE
Confidence 22111110 00 01123444444333322 22 4889999953321111100011245777777655444444 899
Q ss_pred eeeccccc
Q psy4754 268 LRDEESKN 275 (304)
Q Consensus 268 i~~~~~~~ 275 (304)
+..|....
T Consensus 239 v~~wG~n~ 246 (282)
T 3qhy_B 239 VIAWGSSR 246 (282)
T ss_dssp EEEESTTC
T ss_pred EEEecCCC
Confidence 99997544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.66 E-value=21 Score=30.19 Aligned_cols=112 Identities=8% Similarity=0.030 Sum_probs=61.2
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEE--C-CCCCeEEEE-eCCCceEEEEeeeCCCeeEeEEeccce
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQV--S-PDGTAFSSG-SWDTTLRCRLFDLRADKEVACYKKDSI 113 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~--s-~d~~~l~sg-s~D~~i~~~~wd~~~~~~~~~~~~~~~ 113 (304)
.+++.++.||.|.-.|..+|+..=++..- ..++....- . .++..++.. +.||.+ ..+|..++.....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l--~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNI--YYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEE--EEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEE--EEEECCCCcEEeeeccccc
Confidence 46778889999999998888655433321 112211110 0 122333332 467774 4566655543332222111
Q ss_pred eeceeeeEEc-----------CCCCEEEEEeCCCeEEEecCCccccceecc
Q psy4754 114 LFGATSVDFS-----------VSGRLLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 114 ~~~~~~~~~s-----------~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
. ....+... ..+..+++|+.++.+...|+.+++.+-++.
T Consensus 89 v-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 89 V-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp H-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred e-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 0 01112111 145678899999999999999988776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=81.18 E-value=20 Score=36.80 Aligned_cols=147 Identities=9% Similarity=0.083 Sum_probs=78.0
Q ss_pred CceeEEeeccccc-eEeeeecccc--ccceeEEEEcCCCCEEE-Ee------eCCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLRADK-EVACYKKDSI--LFGATSVDFSVSGRLLF-AG------YNDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~~-~~~~~~~~~~--~~~i~~~~~~~~g~~l~-tg------~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
+..|--|++.++. +...|..+.. ...|..-.-+++.++++ +| .-.|.+.+|+.+.+ ..+.+.||.+...
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence 4567788886532 2223333321 22255556677777665 33 24589999998754 3444667765544
Q ss_pred EEEECC---CCCeEEEEeC--CCceEEEEeeeCCC---eeEeE-------EeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 73 CLQVSP---DGTAFSSGSW--DTTLRCRLFDLRAD---KEVAC-------YKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 73 ~l~~s~---d~~~l~sgs~--D~~i~~~~wd~~~~---~~~~~-------~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
.+.... ..+.+.-+.. .| -++.+.++... .+... ++.+....=..++.+++....++..+.-|.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g-~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAG-GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCC-ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence 333321 1122222211 11 13466676432 11110 011100000234566777778888899999
Q ss_pred EEEecCCcccccee
Q psy4754 138 INVWDSLKCCRVNH 151 (304)
Q Consensus 138 i~iwd~~~~~~~~~ 151 (304)
+.++|+.++.++..
T Consensus 282 ~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 282 IHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEecccchhhhh
Confidence 99999999887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 304 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-28 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-09 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.001 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 109 bits (272), Expect = 3e-28
Identities = 85/281 (30%), Positives = 123/281 (43%), Gaps = 43/281 (15%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ + RLL + D + +WDS +V+ + + V +P G + G D
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118
Query: 90 TTLRCRLFDLRADKEVA-----------------------------------------CY 108
R
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 168
S+ + RL +G D + +WD + GHE+ ++ + P+G
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 169 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 228
AF++GS D T CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NV
Sbjct: 239 NAFATGSDDAT--CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 229 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
WD+LK R L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.7 bits (174), Expect = 8e-15
Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 5/217 (2%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123
L GH ++ + D S S D L + + + ++
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV----MTCAYA 106
Query: 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183
SG + G D ++++ N + E +S + ++
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREG-NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243
+ S+ + RL +G D + +WD + GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQY 280
E+ ++ + P+G AF++GS D T R + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.0 bits (167), Expect = 7e-14
Identities = 53/90 (58%), Positives = 66/90 (73%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.2 bits (152), Expect = 6e-12
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 12/146 (8%)
Query: 1 MGKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV--WDSLKC 58
+L+D+R + ++ F +G G +D T + + +
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFG 116
++ + S G +G D C ++D + +
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN--CNVWDALKADRAGVLAGHDNRV--- 315
Query: 117 ATSVDFSVSGRLLFAGYNDYTINVWD 142
+ + + G + G D + +W+
Sbjct: 316 -SCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.6 bits (223), Expect = 2e-21
Identities = 58/256 (22%), Positives = 87/256 (33%), Gaps = 20/256 (7%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
T V F ++ + D TI VWD L GH + V + G
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL----AS 76
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+ + +SV +G + + D TI +W+ V
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR-------LFDLRADKEVAC------- 195
GH V ++ + DGT +S S D T+R +LR + V
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 196 --YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 253
Y S G+ + G L +G D TI +WD + L+GH+N V +
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 254 PDGTAFSSGSWDTTLR 269
G S + D TLR
Sbjct: 257 SGGKFILSCADDKTLR 272
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.9 bits (211), Expect = 6e-20
Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 20/213 (9%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
+G + + D TI +W+ V GH V ++ + DGT +S S D T+R
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168
Query: 94 CR-------LFDLRADKEVAC---------YKKDSILFGATSVDFSVSGRLLFAGYNDYT 137
+LR + V Y S G+ + G L +G D T
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228
Query: 138 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK 197
I +WD + L+GH+N V + G S + D TLR ++D + + +
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR--VWDYKNKRCMKTLN 286
Query: 198 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
TS+DF + + G D T+ VW+
Sbjct: 287 AHE--HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.7 bits (174), Expect = 6e-15
Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 24/169 (14%)
Query: 33 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ----------------- 75
+ G L+ + ND T+ VW L H + V C+
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209
Query: 76 ---VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 132
G SGS D T++ ++D+ + V F G+ + +
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIK--MWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSC 265
Query: 133 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
+D T+ VWD + L HE+ V+ L +GS D T++
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.2 bits (165), Expect = 9e-14
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
G+ + G L +G D TI +WD + L+GH+N V + G S +
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142
D TLR ++D + + + TS+DF + + G D T+ VW+
Sbjct: 267 DDKTLR--VWDYKNKRCMKTLNAHE--HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.8 bits (156), Expect = 1e-12
Identities = 45/202 (22%), Positives = 80/202 (39%), Gaps = 8/202 (3%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123
L GH + V+ + P + S S D T+ +++D K + + F
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATI--KVWDYETGDFERTLKGHTD--SVQDISFD 68
Query: 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183
SG+LL + D TI +WD + + GH++ VS + + P+G S S D T++
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243
+ ++ + V + G L+ + ND T+ VW L H
Sbjct: 129 EVQTGYCVKTFTGHREWV----RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 244 ENRVSCLQVSPDGTAFSSGSWD 265
+ V C+ +P+ + S
Sbjct: 185 RHVVECISWAPESSYSSISEAT 206
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.9 bits (146), Expect = 3e-11
Identities = 35/166 (21%), Positives = 55/166 (33%), Gaps = 4/166 (2%)
Query: 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177
T V F ++ + D TI VWD L GH + V + G
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL----AS 76
Query: 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237
+ + +SV +G + + D TI +W+ V
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 238 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283
GH V ++ + DGT +S S D T+R + + LR
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 5e-10
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
+++D+ + V F G+ + + +D T+ VWD +
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 284
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
L HE+ V+ L +GS D T++
Sbjct: 285 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.2 bits (209), Expect = 2e-19
Identities = 61/261 (23%), Positives = 89/261 (34%), Gaps = 25/261 (9%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
SV FS G+ L G D I +WD V L GHE + L P G SGS D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--- 146
T+R + G+ + AG D + VWDS
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAV----SPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 147 ----CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL 202
GH++ V + + DG + SGS D +++ +K +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 203 F--------GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV-- 252
SV + + + +G D + WD + L GH N V + V
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 253 ----SPDGTAFSSGSWDTTLR 269
P+ F++GS D R
Sbjct: 361 GSSLGPEYNVFATGSGDCKAR 381
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.8 bits (182), Expect = 7e-16
Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 23/176 (13%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKC-------CRVNHLMGHENRVSCLQVSPDGTAFSSG 86
G+ + AG D + VWDS GH++ V + + DG + SG
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 87 SWDTTLRCRLFDLRADKEVACYKKDSILF--------GATSVDFSVSGRLLFAGYNDYTI 138
S D +++ +K + SV + + + +G D +
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 139 NVWDSLKCCRVNHLMGHENRVSCLQV------SPDGTAFSSGSWDTTLRCRLFDLR 188
WD + L GH N V + V P+ F++GS D R++ +
Sbjct: 333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA--RIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.1 bits (162), Expect = 3e-13
Identities = 61/268 (22%), Positives = 92/268 (34%), Gaps = 35/268 (13%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVN--HLMGHENRVSCLQVSPDGTAFS 84
+D L NDY +++ + V + H + V C++ S DG +
Sbjct: 20 LLDLDSQSVPDALKKQTNDY-YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLA 78
Query: 85 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGA----------------TSVDFSVSGRL 128
+G TT +++ + VA DS SV FS G+
Sbjct: 79 TGCNKTT---QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135
Query: 129 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188
L G D I +WD V L GHE + L P G SGS D T+R
Sbjct: 136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 195
Query: 189 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-------CRVNHLM 241
+ G+ + AG D + VWDS
Sbjct: 196 QCSLTLSIEDGVTTVAV----SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 251
Query: 242 GHENRVSCLQVSPDGTAFSSGSWDTTLR 269
GH++ V + + DG + SGS D +++
Sbjct: 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 1e-08
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV------SPDGTAF 83
SV + + + +G D + WD + L GH N V + V P+ F
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 84 SSGSWDTTLRCRLFDLR 100
++GS D R++ +
Sbjct: 372 ATGSGDCKA--RIWKYK 386
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 2e-14
Identities = 33/284 (11%), Positives = 73/284 (25%), Gaps = 51/284 (17%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWD-----SLKCCRVNHLMGHENRVSCLQVSPDGTAFS 84
+V S R ++ G + VWD + + +N + ++ PDG
Sbjct: 55 CAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113
Query: 85 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144
G +TL + A + A ++ + + +
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173
Query: 145 KCCRVNHLM---------------------------------------GHENRVSCLQVS 165
R +++ L
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233
Query: 166 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225
P G + G + + + ++ ++ + S+ F+ G+ + D
Sbjct: 234 PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-----SLKFAYCGKWFVSTGKDNL 288
Query: 226 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+N W + + + V +S D +GS D
Sbjct: 289 LNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKAT 331
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 6e-10
Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 8/135 (5%)
Query: 53 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS 112
L+ R +++ L P G + G + + + ++ ++
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268
Query: 113 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 172
+ S+ F+ G+ + D +N W + + + V +S D
Sbjct: 269 L-----SLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIV 322
Query: 173 SGSWDTTLRCRLFDL 187
+GS D ++++
Sbjct: 323 TGSGDKKA--TVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 4e-09
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
S+ F+ G+ + D +N W + + + V +S D +GS D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDK 328
Query: 91 TLRCRLFDL 99
++++
Sbjct: 329 KA--TVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 1e-07
Identities = 41/186 (22%), Positives = 65/186 (34%), Gaps = 11/186 (5%)
Query: 45 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104
+D I VWD V GH + SC+ +S DGT +G D T+R E
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-----E 214
Query: 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 164
++ S+ + +G A + + + L HE+ V L+
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 165 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 224
+ G F S D L + + K+ S S D SV + + G D
Sbjct: 274 AYCGKWFVSTGKDNLLN--AWRTPYGASIFQSKESS---SVLSCDISVDDKYIVTGSGDK 328
Query: 225 TINVWD 230
V++
Sbjct: 329 KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 33/278 (11%), Positives = 70/278 (25%), Gaps = 40/278 (14%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
S + G++ + + + R + + H V + +S +G
Sbjct: 14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC 73
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150
+ V+ + S G L G T+++WD
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA----- 205
+ +C ++ + S + ++DL V ++ +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 206 ----------------------------------TSVDFSVSGRLLFAGYNDYTINVWDS 231
S+ + +G A + +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLH 252
Query: 232 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ L HE+ V L+ + G F S D L
Sbjct: 253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.5 bits (168), Expect = 5e-14
Identities = 31/258 (12%), Positives = 80/258 (31%), Gaps = 18/258 (6%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+ ++ + N++ +++++ K +V+ L H +V+ + +PD +
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 70
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147
D R K + + + + +G +I ++
Sbjct: 71 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130
Query: 148 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA------------- 194
V + R + L + + + +CR+F +
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 190
Query: 195 ---CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 251
++ S V FS +G + +D T+ + D+ K V L + +
Sbjct: 191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT 250
Query: 252 VSPDGTAFSSGSWDTTLR 269
+ + ++G +
Sbjct: 251 FITESSLVAAGHDCFPVL 268
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.8 bits (122), Expect = 3e-08
Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 4/218 (1%)
Query: 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF 130
+SC + D T + + + +++ +K V ++ T VD++ +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEV--HIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 131 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 190
D VW L+ + V + + +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 191 KE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 248
+ V + K I S+D+ + LL AG D+ ++ +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 249 CLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRI 286
+ SS W + + +R S +
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 225
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.9 bits (117), Expect = 2e-07
Identities = 34/237 (14%), Positives = 68/237 (28%), Gaps = 14/237 (5%)
Query: 41 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA----FSSGSWDTTLRCRL 96
+ + V L H N V S D +
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183
Query: 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156
+ + ++ S V FS +G + +D T+ + D+ K V L
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243
Query: 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216
+ + + + ++G + +D A K + D S ++ R
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVL-FTYDSAAGKLSFGGRLDV---PKQSSQRGLTARE 299
Query: 217 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG----TAFSSGSWDTTLR 269
F + + + ++ H+N VS + V G + F + D +
Sbjct: 300 RFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.3 bits (113), Expect = 4e-07
Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
V FS +G + +D T+ + D+ K V L + + + + ++G
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC 264
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
+ +D A K + D S ++ R F + + + +
Sbjct: 265 FPVL-FTYDSAAGKLSFGGRLDV---PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320
Query: 150 NHLMGHENRVSCLQVSPDG----TAFSSGSWDTTLRCRLFDLRADKEV 193
+ H+N VS + V G + F + D + ++D+R+ +
Sbjct: 321 DS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGM--SIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 4e-05
Identities = 33/293 (11%), Positives = 73/293 (24%), Gaps = 25/293 (8%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
+ +++ +K V ++ T VD++ + D VW
Sbjct: 29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 88
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF--GATSVD 121
L+ + V + + + + K S+D
Sbjct: 89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 148
Query: 122 FSVSGRLLFAGYNDYTINVWD------------------SLKCCRVNHLMGHENRVSCLQ 163
+ + LL AG D+ ++ + V +
Sbjct: 149 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 208
Query: 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223
S +G+ + S D+T+ D + + +L + L+ AG++
Sbjct: 209 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE----SSLVAAGHDC 264
Query: 224 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276
++ G + + D E S
Sbjct: 265 -FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 7e-13
Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 41/269 (15%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
G + +G +D T+ VW ++ + L+GH V Q+ + S +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 94 C------RLFDLRADKEVACYKKDSILFGATSVDFSV----------------------- 124
V C + S D ++
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142
Query: 125 ---SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
GR + +G D+ + VWD ++ L GH NR + DG SGS DT+
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--VYSLQFDGIHVVSGSLDTS-- 198
Query: 182 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241
R++D+ + + + + +L +G D T+ +WD + L
Sbjct: 199 IRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 242 GHENRVS-CLQVSPDGTAFSSGSWDTTLR 269
G S + + + S D T++
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVK 283
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (148), Expect = 2e-11
Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 18/231 (7%)
Query: 44 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103
G D T+ VWD ++ LMGH V C+Q + + +++D +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF----MVKVWDPETET 168
Query: 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 163
+ + + + D G + +G D +I VWD ++ L GH++ S
Sbjct: 169 CLHTLQGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG-- 222
Query: 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223
+ SG+ D+T++ ++D++ + + + + + + + +D
Sbjct: 223 MELKDNILVSGNADSTVK--IWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDD 279
Query: 224 YTINVWD-----SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
T+ +WD ++ G V ++ S + GS + T
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 7e-11
Identities = 31/195 (15%), Positives = 74/195 (37%), Gaps = 14/195 (7%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
+++D + + + + + D G + +G D +I VWD ++
Sbjct: 157 FMVKVWDPETETCLHTLQGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHT 212
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123
L GH++ S + SG+ D+T++ ++D++ + + + + +
Sbjct: 213 LTGHQSLTSG--MELKDNILVSGNADSTVK--IWDIKTGQCLQTLQGPNK-HQSAVTCLQ 267
Query: 124 VSGRLLFAGYNDYTINVWD-----SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 178
+ + +D T+ +WD ++ G V ++ S + GS +
Sbjct: 268 FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
Query: 179 TLRCRLFDLRADKEV 193
T +L L D ++
Sbjct: 328 TEETKLLVLDFDVDM 342
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 2e-08
Identities = 45/217 (20%), Positives = 71/217 (32%), Gaps = 17/217 (7%)
Query: 53 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS 112
W + L GH++ V + G SGS D TL +++ K +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTL--KVWSAVTGKCLRTLV--- 54
Query: 113 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 172
G T +S R + + + + +
Sbjct: 55 ---GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 173 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232
SGS D TLR + V ++ GR + +G D+ + VWD
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAV------RCVQYDGRRVVSGAYDFMVKVWDPE 165
Query: 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
++ L GH NR + DG SGS DT++R
Sbjct: 166 TETCLHTLQGHTNR--VYSLQFDGIHVVSGSLDTSIR 200
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Query: 1 MGKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-----S 55
+ +++D++ + + + + + + + +D T+ +WD
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292
Query: 56 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105
++ G V ++ S + GS + T +L L D ++
Sbjct: 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 342
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
G + +G +D T+ VW ++ + L+GH V Q+ + S +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 270 DEESKNRYMQY 280
+ E+
Sbjct: 83 NAETGECIHTL 93
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.6 bits (145), Expect = 4e-11
Identities = 16/172 (9%), Positives = 42/172 (24%), Gaps = 16/172 (9%)
Query: 38 GRLLFAGYNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGS--- 87
+ L+ D + + + + ++ P +G
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147
D R ++ +S + + + +D
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-- 307
Query: 148 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199
+ +N ++ L++S D D + F L ++ + D
Sbjct: 308 --RKVTEVKNNLTDLRLSADRKTVMVRKDDGKI--YTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.3 bits (144), Expect = 5e-11
Identities = 19/235 (8%), Positives = 52/235 (22%), Gaps = 19/235 (8%)
Query: 45 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104
V + + + +N P + G + + R
Sbjct: 114 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--- 170
Query: 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-------KCCRVNHLMGHEN 157
+ + + F + L+ D + + +
Sbjct: 171 --IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 228
Query: 158 RVSCLQVSPDGTAFSSGS---WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 214
+ ++ P +G D R ++ +S + +
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288
Query: 215 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ +D + +N ++ L++S D D +
Sbjct: 289 AYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.7 bits (114), Expect = 3e-07
Identities = 20/197 (10%), Positives = 44/197 (22%), Gaps = 19/197 (9%)
Query: 45 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR---CRLFDLRA 101
Y I+V+D ++ ++ + D S+ + + +
Sbjct: 156 YVMQAIHVYD-MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214
Query: 102 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-------RVNHLMG 154
+ + I AG D S + L
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274
Query: 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 214
S + L +D++ K + T + S
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLL--KYDVKTRKVTE------VKNNLTDLRLSADR 326
Query: 215 RLLFAGYNDYTINVWDS 231
+ + +D I +
Sbjct: 327 KTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.5 bits (111), Expect = 9e-07
Identities = 29/287 (10%), Positives = 69/287 (24%), Gaps = 18/287 (6%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
+ DFS L A + + D + + R+ ++ D
Sbjct: 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150
++D R K + +F ++ +G+ + + I D
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVF---AMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV-----ACYKKDSILFGA 205
E ++ +S + + G + ++A + +
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181
Query: 206 TSVDFSVSGRLLFAGYNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTA 258
+ F + L+ D + + + + ++ P
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241
Query: 259 FSSGS-WDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRSI 304
+G + S R I + L G
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 10/108 (9%), Positives = 27/108 (25%), Gaps = 6/108 (5%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
++ +S + + + +D
Sbjct: 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RK 309
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 111
+ +N ++ L++S D D + F L ++ + D
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKI--YTFPLEKPEDERTVETD 355
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.2 bits (144), Expect = 5e-11
Identities = 28/295 (9%), Positives = 69/295 (23%), Gaps = 30/295 (10%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDS-----LK 57
+ + D + GR+ + ++ D L
Sbjct: 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70
Query: 58 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV-------ACYKK 110
++ + +SPDG + L F+++ + + K
Sbjct: 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130
Query: 111 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV----NHLMGHENRVSCLQVSP 166
T + ++ G L+ D + ++ + + L V
Sbjct: 131 FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190
Query: 167 DGTAFSSGSWDTTLRC----RLFDLRADKEVA--------CYKKDSILFGATSVDFSVSG 214
+ + + ++ + +V+
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250
Query: 215 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
A + +D L+ + + + VS DG+ G L
Sbjct: 251 AKTRAFGAYNVLESFD-LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLA 304
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 3e-06
Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 8/151 (5%)
Query: 44 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103
+ + H D ++ T L DL +
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL--TMDLETGE 230
Query: 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 163
++ + +V+ A + +D L+ + + +
Sbjct: 231 MAM---REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD-LEKNASIKRVPLPHSYYSVN 286
Query: 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194
VS DG+ G L +D ++
Sbjct: 287 VSTDGSTVWLGGALGDL--AAYDAETLEKKG 315
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91
+V+ A + +D L+ + + + VS DG+ G
Sbjct: 244 FSTAVNPAKTRAFGAYNVLESFD-LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD 302
Query: 92 LRCRLFDLRADKEVA 106
L +D ++
Sbjct: 303 L--AAYDAETLEKKG 315
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 2e-10
Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 56/281 (19%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
+ + +G D TI +WD L GH V CLQ S +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 94 C------------------------------------RLFDLRADKEVACYKKDSILFGA 117
++D+ + ++ ++ + A
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRA 139
Query: 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177
+ + + D TI VW++ C V L GH+ ++C + SGS D
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSD 197
Query: 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR- 236
T+R L+D+ + + L D + + +G D I VWD +
Sbjct: 198 NTIR--LWDIECGACLRVLEGHEELVRCIRFDN----KRIVSGAYDGKIKVWDLVAALDP 251
Query: 237 --------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ L+ H RV + D S S D T+
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFR--LQFDEFQIVSSSHDDTIL 290
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 16/192 (8%)
Query: 45 YNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103
D +I VWD + +R + V D S S D T ++++ +
Sbjct: 112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT--IKVWNTSTCE 169
Query: 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 163
V RL+ +G +D TI +WD + L GHE
Sbjct: 170 FVRTLNGHKR----GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRC 223
Query: 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS-----VDFSVSGRLLF 218
+ D SG++D +++DL A + L +
Sbjct: 224 IRFDNKRIVSGAYDGK--IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIV 281
Query: 219 AGYNDYTINVWD 230
+ +D TI +WD
Sbjct: 282 SSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 6e-04
Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 13/146 (8%)
Query: 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 61
G ++++ + V RL+ +G +D TI +WD +
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKR----GIACLQYRDRLVVSGSSDNTIRLWDIECGACL 211
Query: 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS-- 119
L GHE + D SG++D +++DL A + L
Sbjct: 212 RVLEGHEE--LVRCIRFDNKRIVSGAYDGK--IKVWDLVAALDPRAPAGTLCLRTLVEHS 267
Query: 120 ---VDFSVSGRLLFAGYNDYTINVWD 142
+ + +D TI +WD
Sbjct: 268 GRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 58.2 bits (139), Expect = 2e-10
Identities = 39/305 (12%), Positives = 74/305 (24%), Gaps = 45/305 (14%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLKCCRVN 62
N+ + D+ +D FG + + R + + I D C
Sbjct: 18 NNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 76
Query: 63 HLM------GHENRVSCLQVSPDGTAFSSGSWDTTLRC----------RLFDLRADKEVA 106
H + +SPDG + T +F E
Sbjct: 77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 136
Query: 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD------------------SLKCCR 148
+ + + + G L AG + Y ++V +
Sbjct: 137 PVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 196
Query: 149 VNHLMGHENRVSCL----QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 204
+ S L + D ++ DL+ K D
Sbjct: 197 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL--SVDLKTGKTHTQEFADLTELY 254
Query: 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264
T + ++ N + +D LK ++ ++ C+ G G
Sbjct: 255 FTGLRSPKDPNQIYGVLN--RLAKYD-LKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT 311
Query: 265 DTTLR 269
L
Sbjct: 312 FNDLA 316
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 2e-07
Identities = 23/174 (13%), Positives = 44/174 (25%), Gaps = 20/174 (11%)
Query: 74 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AG 132
+ ++ L + D+ +D FG + + R +
Sbjct: 2 PALKAGHEYMIVTNYPNNL--HVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLN 58
Query: 133 YNDYTINVWDSLKCCRVNHLM------GHENRVSCLQVSPDGTAFSSGSWDTTLRC---- 182
+ I D C H + +SPDG + T
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 183 ------RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
+F E + + + + G L AG + Y ++V
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.5 bits (106), Expect = 3e-06
Identities = 29/267 (10%), Positives = 55/267 (20%), Gaps = 43/267 (16%)
Query: 1 MGKNHCRLFDLRADKEVACYKKDSILFGATS----VDFSVSGRLLFAGYNDYTINVWDSL 56
DL K S+ S G+ ++A N +
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 57 --------------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102
+ +V ++ + DG+ + +G + +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178
Query: 103 KEV------------------ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144
+ + T F + Y D
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
Query: 145 KCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 203
SP G + +DL+ K + D
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR---LAKYDLKQRKLIKAANLDH--- 292
Query: 204 GATSVDFSVSGRLLFAGYNDYTINVWD 230
V F G L+ G + V++
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFN 319
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.0 bits (102), Expect = 1e-05
Identities = 26/216 (12%), Positives = 55/216 (25%), Gaps = 29/216 (13%)
Query: 1 MGKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD------ 54
+ +F E + + + + G L AG + Y ++V
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178
Query: 55 ------------SLKCCRVNHLMGHENRVSCL----QVSPDGTAFSSGSWDTTLRCRLFD 98
+ + S L + D ++ D
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL--SVD 236
Query: 99 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 158
L+ K D T + ++ N + +D LK ++ ++
Sbjct: 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN--RLAKYD-LKQRKLIKAANLDHT 293
Query: 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194
C+ G G L +F+ ++V
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDL--AVFNPDTLEKVK 327
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 55.4 bits (132), Expect = 2e-09
Identities = 21/276 (7%), Positives = 55/276 (19%), Gaps = 45/276 (16%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS--- 84
G+ S S G + V+D + + + + +
Sbjct: 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 85 -----SGSWDTTLRCRLFDLRADKEVACYK-KDSILFGATS----VDFSVSGRLLFAGYN 134
+ + + K + S L +
Sbjct: 136 ACLLFFLFGSSAAA--GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA 193
Query: 135 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194
Q + G + + D+ A
Sbjct: 194 AAPAAAG----IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQ----GDIPAAGATM 245
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDY-------------------TINVWDSLKCC 235
D G + +F +G + A + +
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT-ASVG 304
Query: 236 RVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLR 269
+ + + + + + + DG +++ + L
Sbjct: 305 QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.7 bits (112), Expect = 9e-07
Identities = 18/188 (9%), Positives = 46/188 (24%), Gaps = 32/188 (17%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
AT S L + Q + G + +
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAG----IVGAQCTGAQNCSSQAAQANYPGMLVWAVA 230
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY----------- 136
D+ A D G + +F +G + A +
Sbjct: 231 SSILQ----GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286
Query: 137 --------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRCRLFD 186
+ + + + + + + + DG +++ + L ++D
Sbjct: 287 RSCLAAAENTSSVT-ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL--DIYD 343
Query: 187 LRADKEVA 194
+D++ +
Sbjct: 344 AASDQDQS 351
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 6e-09
Identities = 25/283 (8%), Positives = 73/283 (25%), Gaps = 28/283 (9%)
Query: 22 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD---SLKCCRVNHLMGHENRVSCLQVSP 78
KD I + + S LL D ++ V+ K + + +++ + C
Sbjct: 11 KDYI----SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138
+ ++ + + A ++ L + + + +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 139 NVWDSLKCCRVNHLMGHENRVS----CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194
+ + + N + + + G ++ ++ L D
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--------------SLKCCRVN-H 239
+ D + V + +C R+N
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR--DEESKNRYMQY 280
V+ ++ SP + D + + +++ + +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 3e-06
Identities = 30/286 (10%), Positives = 76/286 (26%), Gaps = 21/286 (7%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGA-TSVDFS-VSGRLLFAGYNDYTINVWDSLKCCRV 61
++ + + +F + ++ G I D +
Sbjct: 33 GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92
Query: 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 121
L +E + ++ G + L + V K +
Sbjct: 93 QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152
Query: 122 FSVS---GRLLFAGYNDYTINVWD----SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 174
L G N+ + + + + + ++
Sbjct: 153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212
Query: 175 SWDTTLRCRLFDLRADKEVA-----------CYKKDSILFGATSVDFSVSGRLLFAGYND 223
S D + FD + D + K ++ + S++FS + L+ +D
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272
Query: 224 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
I+ W+ ++ + N S ++++ + D T +
Sbjct: 273 GIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFK 317
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 18 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQV 76
A K+ + +S+D V+ +DY + + +C R+N V+ ++
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 136
SP + D ++L+ K++ + K + + V + S +L +D
Sbjct: 260 SPRHKFLYTAGSDGI--ISCWNLQTRKKIKNFAKFN---EDSVVKIACSDNILCLATSDD 314
Query: 137 TINVWDSLKCCRVNHLMGHENRV 159
T ++ + + + +
Sbjct: 315 TFKTNAAIDQT----IELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQV 164
A K+ + +S+D V+ +DY + + +C R+N V+ ++
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 165 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 224
SP + D ++L+ K++ + K + + V + S +L +D
Sbjct: 260 SPRHKFLYTAGSDGI--ISCWNLQTRKKIKNFAKFN---EDSVVKIACSDNILCLATSDD 314
Query: 225 TINVWDSLKCCRVNHLMGHENRV 247
T ++ + + + +
Sbjct: 315 TFKTNAAIDQT----IELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 21/213 (9%), Positives = 55/213 (25%), Gaps = 11/213 (5%)
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA-TSVDFS- 123
++ +S +++ P + SWD +L ++ + + +F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSL--TVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183
+ ++ G I D + L +E + ++ G + L
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 184 LFDLRADKEVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWD----SLKCCR 236
+ V K + + L G N+ + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ + + ++ S D +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 1e-07
Identities = 27/245 (11%), Positives = 60/245 (24%), Gaps = 5/245 (2%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 88
A + + +G + N ++ H ++ + + SP G +SG
Sbjct: 20 AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 89 DTTLRCRLFDLRADKEVACYK----KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144
+R + + + + + +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 204
+ + S + F ++ S+ +
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264
F+ +G + + + H V L SPDGT +S S
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 265 DTTLR 269
D T++
Sbjct: 259 DKTIK 263
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 27/271 (9%), Positives = 64/271 (23%), Gaps = 7/271 (2%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
+ + + Y + S T S SG +G + +WD+ + +
Sbjct: 38 TSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95
Query: 64 LM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 121
V + + ++ +F + +
Sbjct: 96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK 155
Query: 122 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
S R++ ++ + + S S+G T +
Sbjct: 156 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 215
Query: 182 CRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNH 239
D ++ + + G + + D TI +W+
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275
Query: 240 LMGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ L + A S S + +
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 3e-07
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 3/168 (1%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
+ G +D I V+DS+ + L GH+ V L+ + G S + T
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 153
+ + + + G D T++VW K V
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNI---KYIVTGSRDNTLHVWKLPKESSVPDHG 135
Query: 154 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201
+ + F R + V+ +++
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 3e-06
Identities = 15/71 (21%), Positives = 25/71 (35%)
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ G +D I V+DS+ + L GH+ V L+ + G S + T
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 270 DEESKNRYMQY 280
+ K
Sbjct: 79 WDIKKGCCTHV 89
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.002
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
F VS +L +G ++ N+++ S K N ++ +++ + ++
Sbjct: 286 AITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN-ILKDADQIWSVNFKGKTL-VAAVE 342
Query: 88 WDTTLRCRLFDL 99
D + D
Sbjct: 343 KDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.002
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 118 TSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 175
F VS +L +G ++ N+++ S K N ++ +++ + ++
Sbjct: 286 AITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN-ILKDADQIWSVNFKGKTL-VAAVE 342
Query: 176 WDTTLRCRLFDL 187
D + D
Sbjct: 343 KDGQSFLEILDF 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 25/279 (8%), Positives = 55/279 (19%), Gaps = 39/279 (13%)
Query: 29 ATSVDFSVSGRLLFA----------GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78
+ + G + G + V+D + + + + P
Sbjct: 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP 108
Query: 79 DGTAFSS-------GSWDTTLRCRLFDLRADKEVACYKKDSILF-----GATSVDFSVSG 126
T+ + + + DL T G
Sbjct: 109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 168
Query: 127 R-LLFAGYNDYTINVWDS-----LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
A + T + + +NH + + + G
Sbjct: 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 228
Query: 181 RCRL---FDLRADKEVACYKKDSILF-----GATSVDFSVSGRLLFAGYNDYTINVWDSL 232
+ A++ + V D
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD-A 287
Query: 233 KCCRVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLR 269
K + + + VS D ++ + D TL
Sbjct: 288 KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLY 326
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 18/169 (10%), Positives = 34/169 (20%), Gaps = 33/169 (19%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+S L I+ D S + + P G +
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147
+ V D K
Sbjct: 258 RALDRIYL--------------------------LVDQRDEWRHKTASRFVVVLD-AKTG 290
Query: 148 RVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRCRLFDLRADKEVA 194
+ + + VS D ++ + D TL + D + +E+
Sbjct: 291 ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL--YIHDAESGEELR 337
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.5 bits (85), Expect = 0.002
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AFSS 85
+ V D K + + + VS D ++
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLD-AKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318
Query: 86 GSWDTTLRCRLFDLRADKEVA 106
+ D TL + D + +E+
Sbjct: 319 STGDKTL--YIHDAESGEELR 337
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 52/291 (17%)
Query: 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWD----------SLKCCRVNHLMGHENRVSC 73
+ + L+ + + + + ++
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 74 LQVSPDGTA-----FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG------------ 116
L+ + T F AD+ + S
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 117 --ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE------NRVSCLQVSPDG 168
ATSVD S G L+ G+N+ T+ + + + + N + ++ SP G
Sbjct: 185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243
Query: 169 TAFSSGSWDTTLR-CRLFDLRADKEVACYKKDSILFGATSV-----------DFSVSGRL 216
+ + + L++ + + + A+ F+ SG
Sbjct: 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303
Query: 217 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC----LQVSPDGTAFSSGS 263
L + D + WD R+ L H + + L V G + +
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 3e-05
Identities = 38/299 (12%), Positives = 74/299 (24%), Gaps = 65/299 (21%)
Query: 33 DFSVSGRLLFAGYNDYTINVWD------SLKCCRVNHLMGHENRVSCLQV-------SPD 79
S + D + VWD + H++ + + V + +
Sbjct: 19 SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78
Query: 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF--------GATSVDFSVSG----- 126
++ S+ L + + + E + + ++ + S
Sbjct: 79 LCLVATTSFSGDL--LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 136
Query: 127 RLLFAGYNDYTINVWD------------------SLKCCRVNHLMGHENRVSCLQVSPDG 168
L A T +W V M + + +S G
Sbjct: 137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 196
Query: 169 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA--TSVDFSVSGRLLFAGYNDYTI 226
++G + T++ + I SV FS G LL ++ +
Sbjct: 197 L-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 255
Query: 227 NVW----------------DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ H + V L + G S WD LR
Sbjct: 256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 314
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 5e-05
Identities = 23/251 (9%), Positives = 58/251 (23%), Gaps = 37/251 (14%)
Query: 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK---------- 110
N H+ + + T S S D L +++D + K
Sbjct: 7 ANAGKAHDADIFSVSACNSFTV--SCSGDGYL--KVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 111 -DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 169
+ + L+ + + + ++ + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 170 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
+ S AT V + ++
Sbjct: 123 WALKWGAS-----------------NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165
Query: 230 DSLKCCR----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSR 285
+ V M + + +S G ++G + T++ E Y S+
Sbjct: 166 NWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQ 224
Query: 286 ITKPTQGLTVY 296
+ ++
Sbjct: 225 HSMINNSNSIR 235
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 8e-06
Identities = 28/257 (10%), Positives = 57/257 (22%), Gaps = 16/257 (6%)
Query: 29 ATSVDFSVSG-RLLFAGYNDYTINVWD--SLKCCRVNHLMGHE-NRVSCLQVSP--DGTA 82
T + + + + + + D K V GH + V+ ++ SP
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA----TSVDFSVSGR--LLFAGYNDY 136
SG + + + S + + + GR + D
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 196
+ + GH R++ + S D +
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199
Query: 197 KKDSILFGATSVDFSVSGRLLFAGYNDYTI----NVWDSLKCCRVNHLMGHENRVSCLQV 252
V+FS + +
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 259
Query: 253 SPDGTAFSSGSWDTTLR 269
D F++ D T+R
Sbjct: 260 WLDSQKFATVGADATIR 276
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 3e-05
Identities = 26/208 (12%), Positives = 52/208 (25%), Gaps = 9/208 (4%)
Query: 30 TSVDFSVSGR--LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+ + + GR + D + + GH R++ + S
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI----NVWDS 143
D + V+FS +
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238
Query: 144 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 203
+ D F++ D T+ R++D+ K V + D
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI--RVWDVTTSKCVQKWTLDKQQL 296
Query: 204 GATSVDFSVSG-RLLFAGYNDYTINVWD 230
G V +G + + D T+N ++
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 18/147 (12%)
Query: 135 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK--E 192
I + D L V ++S G D + + DL +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKV--NMIDLWMKEPTT 97
Query: 193 VACYKKDSILFG-ATSVDFSVSGRLLFA-GYNDYTINVWD--SLKCCRVNHLM------- 241
VA K S TS + A Y + D +L+ ++
Sbjct: 98 VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 157
Query: 242 --GHENRVSCLQVSPDGTAFSSGSWDT 266
E RV+ + S F +T
Sbjct: 158 EYHPEPRVAAILASHYRPEFIVNVKET 184
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (85), Expect = 0.002
Identities = 21/195 (10%), Positives = 45/195 (23%), Gaps = 28/195 (14%)
Query: 2 GKNHCRLFDLRADKEVACYKKDSILFGAT--SVDFSVSGRLLFAGYNDYTINVWD--SLK 57
L D + + G S SGR LF D +N+ D +
Sbjct: 40 DAGQIALIDGSTYEIKT-----VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 94
Query: 58 CC---RVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVA-----CY 108
+ + + + A + W + + D +
Sbjct: 95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLEPKKIQSTRGM 152
Query: 109 KKDSILFGATSVDFSVSG-----RLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSC 161
D + ++ + I + D L + + E +
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHD 211
Query: 162 LQVSPDGTAFSSGSW 176
+ F + +
Sbjct: 212 GGLDGSHRYFITAAN 226
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 3e-05
Identities = 34/276 (12%), Positives = 69/276 (25%), Gaps = 46/276 (16%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-------- 81
T++ + L +G D I W S H N + L S
Sbjct: 17 TALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDD 67
Query: 82 --------------------AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 121
A + G + K + ++V
Sbjct: 68 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 127
Query: 122 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
S + + + S + + S + +SP T ++G +
Sbjct: 128 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL 187
Query: 182 CRL-------FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234
A + + + + L+ G D I ++ +
Sbjct: 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247
Query: 235 CRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
++ L H++ V+ L T S D ++
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK 282
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.001
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 19 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVS 77
+ + + L+ G D I ++ + ++ L H++ V+ L
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267
Query: 78 PDGTAFSSGSWDTTLR 93
T S D ++
Sbjct: 268 TPST-LVSSGADACIK 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.6 bits (98), Expect = 3e-05
Identities = 28/268 (10%), Positives = 77/268 (28%), Gaps = 12/268 (4%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLKCCRVN 62
++ + D+ ++K A S S G ++ A + +++ D+ +
Sbjct: 12 DNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA 68
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
+ + + + +TL +
Sbjct: 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-----SNTVAGTVKTGKSPLGLAL 123
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
S G+ L+ N + V + + + V+PDGT ++D+
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
+ + + + A + + + + + ++ +
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV--TNVDKYFNTVSMIDTGTNKITARIP 241
Query: 243 HENRVSCLQVSPDG-TAFSSGSWDTTLR 269
+ + V+PDG + + S+ T+
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVS 269
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 35/305 (11%), Positives = 72/305 (23%), Gaps = 40/305 (13%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-----SLKC 58
L D + K V + S SGR L D I++ D K
Sbjct: 42 GQIALVDGDSKKIVKVID---TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 98
Query: 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGAT 118
+ + + S + +G++ E + T
Sbjct: 99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWP--PQFAIMDGETLEPKQIVSTRGMTVDT 156
Query: 119 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 178
+++ + + + +V + + + + G WD+
Sbjct: 157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS 216
Query: 179 TLRCRLFDLRADKEVACYKKDSILFGAT------------------------SVDFSVSG 214
+ R + +VA A S G
Sbjct: 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDG 276
Query: 215 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274
+ G + + K L G ++ P + DTT +
Sbjct: 277 SISLIGTDPKNHPQYAW-KKVAE--LQGQGGGSLFIKTHPKSSHLYV---DTTFNPDARI 330
Query: 275 NRYMQ 279
++ +
Sbjct: 331 SQSVA 335
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.2 bits (89), Expect = 3e-04
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123
GH ++ L S DG S + + +D+ + T + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHI--NSWDISTGISNRVFPDVH-ATMITGIKTT 64
Query: 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 165
G L ++D+ V + + ++ L ++
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.2 bits (89), Expect = 3e-04
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
GH ++ L S DG S + + +D+ + T + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHI--NSWDISTGISNRVFPDVH-ATMITGIKTT 64
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 253
G L ++D+ V + + ++ L ++
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.7 bits (85), Expect = 0.001
Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 8/241 (3%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAFSSGSW 88
T++ S G+ LF+ + IN WD H ++ ++ + G F+
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD 75
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 148
D ++ + + L + + I ++
Sbjct: 76 D---HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY----SHG 128
Query: 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSV 208
+ SC+ +S D + G D+ + + EV + +
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 209 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268
+ +V ++ + N H +V+C+ SPD ++GS D ++
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248
Query: 269 R 269
Sbjct: 249 I 249
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.7 bits (80), Expect = 0.004
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
GH ++ L S DG S + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHIN 37
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 37.6 bits (87), Expect = 0.001
Identities = 36/258 (13%), Positives = 63/258 (24%), Gaps = 52/258 (20%)
Query: 30 TSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 88
+ D +G+ + YN + ++ N G + G
Sbjct: 179 DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGDS 237
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLK 145
+ D R + E Y I + S + G T++V K
Sbjct: 238 KVPV----VDGRGESEFTRY----IPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289
Query: 146 CCRVNHLMGHENRVSC------LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199
+ L + P T F T L D +V
Sbjct: 290 LDDL--FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT------LFIDSQVC----- 336
Query: 200 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 259
+ + + + +Y D V + GH + DG
Sbjct: 337 -------KWNIADAIKHYNGDRVNYIRQKLD------VQYQPGHNHASLTESRDADGKWL 383
Query: 260 SSGSWDTTLRDEESKNRY 277
S + SK+R+
Sbjct: 384 VVLS-------KFSKDRF 394
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 304 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.8 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.62 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.46 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.37 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.35 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.35 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.34 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.33 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.31 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.23 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.2 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.15 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.07 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.05 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.04 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.0 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.79 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.75 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.39 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.23 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.12 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.11 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.56 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.22 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.9 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.63 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.54 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.41 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.04 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.75 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.5 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.74 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.41 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.32 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.85 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.49 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.44 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 91.28 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.13 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 89.64 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.36 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.98 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.55 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.42 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 85.33 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 83.44 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 81.06 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 80.3 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.2e-41 Score=288.73 Aligned_cols=245 Identities=35% Similarity=0.583 Sum_probs=211.3
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...|++++|+|++++||||+.||+|+|||+.+++.+..+.+|..+|.+++|+|+++++++|+.|+++ ++|+.....
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i--~~~~~~~~~ 130 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC--SIYNLKTRE 130 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE--EEEESSSSC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee--ecccccccc
Confidence 345559999999999999999999999999999999999999999999999999999999999999996 567754321
Q ss_pred ----eEeEEeccc---------------------------------------eeeceeeeEEcCCCCEEEEEeCCCeEEE
Q psy4754 104 ----EVACYKKDS---------------------------------------ILFGATSVDFSVSGRLLFAGYNDYTINV 140 (304)
Q Consensus 104 ----~~~~~~~~~---------------------------------------~~~~~~~~~~s~~~~~l~sg~~dg~i~i 140 (304)
....+..+. ....+....+.+.+.++++|+.|+.|++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 210 (340)
T d1tbga_ 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEE
Confidence 111110000 0001345567788899999999999999
Q ss_pred ecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 141 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 141 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
||+++.+.+.++.+|..+|.+++|+|+++.|++|+.|+.+ ++||++..+....+........+.+++|+|++++|++|
T Consensus 211 ~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g 288 (340)
T d1tbga_ 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC--RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEE
T ss_pred EECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeE--EEEeecccccccccccccccCceEEEEECCCCCEEEEE
Confidence 9999999888999999999999999999999999999996 68999988877766555555568999999999999999
Q ss_pred eCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+.|+.|++||+.+++++..+.+|.++|++|+|+|++.+|+|||.|++|++|+
T Consensus 289 ~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4e-41 Score=288.81 Aligned_cols=266 Identities=15% Similarity=0.161 Sum_probs=220.2
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee--eeecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~d~ 80 (304)
++.|.+||+.+.+....+. .|...|++++|+|+|++||+|+.||+|++||+.+++.. ..+.+|..+|.+++|+|++
T Consensus 37 ~~~v~i~~~~~~~~~~~~~--~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 114 (311)
T d1nr0a1 37 GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 114 (311)
T ss_dssp TTEEEEEETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred CCEEEEEECCCCceeEEEc--CCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc
Confidence 4579999999887766553 34567999999999999999999999999999877543 4578899999999999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCE-EEEEeCCCeEEEecCCccccceeccCcccce
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
++|++++.+....+++|++.+.+....+..+. ..+.+++|+|++++ +++|+.|+.|++||+++.+....+.+|..+|
T Consensus 115 ~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~--~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i 192 (311)
T d1nr0a1 115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA--RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192 (311)
T ss_dssp CEEEEEECCSSCSEEEEETTTCCBCBCCCCCS--SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred cccccccccccccccccccccccccccccccc--cccccccccccceeeecccccccccccccccccccccccccccccc
Confidence 99999987544335688888777665554432 34688999999885 7889999999999999988888889999999
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc-----eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-----ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
.++.++|+++.+++++.|+.+ ++||.+..+....+.... +...+++++|+|++++|++|+.|++|+|||+.++
T Consensus 193 ~~v~~~p~~~~l~~~~~d~~v--~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~ 270 (311)
T d1nr0a1 193 HSVRYNPDGSLFASTGGDGTI--VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 270 (311)
T ss_dssp EEEEECTTSSEEEEEETTSCE--EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred cccccCccccccccccccccc--cccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999996 689998887776664321 1235789999999999999999999999999999
Q ss_pred eeeEEeecccc-ceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 235 CRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 235 ~~~~~~~~h~~-~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+++.++..|.. ....+.+.+++..|++++.|+.|++||++
T Consensus 271 ~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99998887653 23344455566789999999999999863
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-40 Score=285.52 Aligned_cols=261 Identities=18% Similarity=0.244 Sum_probs=220.4
Q ss_pred CCceeEEeeccccceE---eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--CCRVNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~---~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~--~~~~~~~~~h~~~V~~l~~ 76 (304)
+|++|+|||+.+++.. .......+...|.+++|+|++++|++|+.||+|++||+.. .+....+..|...|.+++|
T Consensus 70 ~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 149 (337)
T d1gxra_ 70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccc
Confidence 5789999999876432 2222234445599999999999999999999999999864 3456677889999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
+|++.++++++.|+.+ ++||+.+.+.......+. ..+.+++|++++..+++++.|+.+++||+++.+.+.. ..|.
T Consensus 150 ~~~~~~l~s~~~d~~i--~~~~~~~~~~~~~~~~~~--~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~-~~~~ 224 (337)
T d1gxra_ 150 SPDSKVCFSCCSDGNI--AVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFT 224 (337)
T ss_dssp CTTSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECS
T ss_pred cccccccccccccccc--cccccccccccccccccc--cccccccccccccccccccccccccccccccceeecc-cccc
Confidence 9999999999999995 789999887766554432 3467899999999999999999999999988776654 4588
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
..|.+++|+|+++.+++++.|+.+ ++||+++.+........ ..+++++|+|++++|++|+.|+.|++||..++++
T Consensus 225 ~~i~~l~~~~~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 225 SQIFSLGYCPTGEWLAVGMESSNV--EVLHVNKPDKYQLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCE--EEEETTSSCEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cceEEEEEcccccccceecccccc--ccccccccccccccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCE
Confidence 999999999999999999999986 68999887765443222 3578999999999999999999999999999988
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+..+ +|.++|++++|+|++++|++|+.|++|++|++
T Consensus 300 ~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 300 IFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 8765 48899999999999999999999999999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-39 Score=286.12 Aligned_cols=268 Identities=27% Similarity=0.345 Sum_probs=216.4
Q ss_pred CCceeEEeeccccceEeeeecc----------------ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD----------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~ 65 (304)
+|++|+|||+.+++.+..+..+ .+...|++++|+|+|++|++|+.||+|++||...++.+..+.
T Consensus 81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~ 160 (388)
T d1erja_ 81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160 (388)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccc
Confidence 4789999999998776554432 223348999999999999999999999999999999999999
Q ss_pred CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 66 ~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
+|...|.++++++++..+++++.++.+ ++||............... ......+.+++.++++|+.|+.|++||..+
T Consensus 161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i--~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 236 (388)
T d1erja_ 161 GHEQDIYSLDYFPSGDKLVSGSGDRTV--RIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTTEEEEEEECSSC--EEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred cccccccccccccccccccccccceee--eeeeccccccccccccccc--cccccccCCCCCeEEEEcCCCeEEEeeccc
Confidence 999999999999999999999999985 7899988777665544332 123333455788999999999999999887
Q ss_pred ccccee-------ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeec----------CceeeeeeEE
Q psy4754 146 CCRVNH-------LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK----------DSILFGATSV 208 (304)
Q Consensus 146 ~~~~~~-------~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~----------~~~~~~~~~~ 208 (304)
...... ..+|..+|.+++|+|+++.|++++.|+.+ ++||++.......... ..+...+.++
T Consensus 237 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (388)
T d1erja_ 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV--KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314 (388)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE--EEEEC---------------CEEEEEECCSSCEEEE
T ss_pred CccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcE--EEEeccCCccccccccccccceeeecccccceEEEE
Confidence 654433 34789999999999999999999999986 6899876543221110 0111357899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEE------ccCCCEEEEeecCCeeeeccccc
Q psy4754 209 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV------SPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 209 ~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~------sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+|+|++++|++|+.||.|++||+.+++++.++.+|.+.|.++++ +|++.+|||||.|++|++|++++
T Consensus 315 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence 99999999999999999999999999999999999999999975 67899999999999999998753
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-39 Score=277.95 Aligned_cols=266 Identities=22% Similarity=0.268 Sum_probs=216.6
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-----eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-----~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
|...|++++|+|+|++||||+ ||.|+|||+.+.... ....+|.++|.+++|+|++++|++|+.|++| ++||+
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i--~iwd~ 126 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL--SIWDL 126 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE--EEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccc--ccccc
Confidence 445599999999999999997 899999998764322 2235799999999999999999999999996 68998
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
...+.............+..+.|+|++.++++++.|+.|++||+.+.+......+|...|.+++|+|+++.+++++.|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 75443222222112234677889999999999999999999999998888888899999999999999999999999999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEE
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 259 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 259 (304)
+ ++||+++++.+..+... ..+.+++|+|++++|++|+.|+.|++||..++... ....|...|++++|+|++++|
T Consensus 207 v--~i~d~~~~~~~~~~~~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l 280 (337)
T d1gxra_ 207 V--RSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWF 280 (337)
T ss_dssp E--EEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEE
T ss_pred c--cccccccceeecccccc---cceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEE
Confidence 6 68999998887766543 35789999999999999999999999999887655 466799999999999999999
Q ss_pred EEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 260 SSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
++|+.|+.|++|+...+......+. ...-..+.|+|+++.
T Consensus 281 ~s~s~Dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~d~~~ 320 (337)
T d1gxra_ 281 VSTGKDNLLNAWRTPYGASIFQSKE----SSSVLSCDISVDDKY 320 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSCE
T ss_pred EEEeCCCeEEEEECCCCCEEEEccC----CCCEEEEEEeCCCCE
Confidence 9999999999999876554333221 122345778887764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.3e-39 Score=275.52 Aligned_cols=248 Identities=17% Similarity=0.159 Sum_probs=209.7
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
...++++|+|+.|+.++ ++.|.+||+.+.+..+.+.+|.+.|++++|+|+|++|++|+.|++| ++||+.........
T Consensus 20 ~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i--~iwd~~~~~~~~~~ 96 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV--RIWDTTQTTHILKT 96 (311)
T ss_dssp CCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEE--EEEESSSTTCCEEE
T ss_pred eEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceE--eeeeeecccccccc
Confidence 56789999999998875 6679999999988888889999999999999999999999999995 78999876544322
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEe
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLF 185 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~ 185 (304)
........+.+++|+|+++++++++. +..+++|++.+.+...++.+|...|.+++|+|+++ .+++|+.|+.+ ++|
T Consensus 97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i--~i~ 174 (311)
T d1nr0a1 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV--AIF 174 (311)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE--EEE
T ss_pred ccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc--ccc
Confidence 22212235788999999999999875 46699999998888888999999999999999987 48899999996 689
Q ss_pred eecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee-------ccccceEEEEEccCCCE
Q psy4754 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-------GHENRVSCLQVSPDGTA 258 (304)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~-------~h~~~i~~l~~sp~g~~ 258 (304)
|+++.+....+..+. ..++++.++|+++++++++.|+.|++||..++..+..+. +|.++|++++|+|++++
T Consensus 175 d~~~~~~~~~~~~~~--~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 175 EGPPFKFKSTFGEHT--KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp ETTTBEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred ccccccccccccccc--ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCE
Confidence 999988777766544 357899999999999999999999999998877766553 58899999999999999
Q ss_pred EEEeecCCeeeeccccccchhheee
Q psy4754 259 FSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
|++|+.|++|++||..++.+...++
T Consensus 253 l~tgs~Dg~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 253 IASASADKTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEE
Confidence 9999999999999987765444333
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-38 Score=269.76 Aligned_cols=261 Identities=23% Similarity=0.345 Sum_probs=233.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|||||+.+++++..+. .+...|.+++|+|++.+++++..++.+.+|+....+....+.+|...+.++.|+|+++
T Consensus 37 ~Dg~i~iWd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (317)
T d1vyhc1 37 EDATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 114 (317)
T ss_dssp SSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCCEEEEEe--CCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCc
Confidence 47899999999998876654 3455699999999999999999999999999998888888889999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
.+++++.|+.+ ++||+.+.+.+..+..+.. .+.++.+++++.++++++.|+.|++|+..+......+.+|...+.+
T Consensus 115 ~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~ 190 (317)
T d1vyhc1 115 HIVSASRDKTI--KMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190 (317)
T ss_dssp EEEEEETTSEE--EEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred eEEeeccCcce--eEeecccceeeeEEccCCC--cceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceE
Confidence 99999999995 6899998888777665432 4578899999999999999999999999998888888999999999
Q ss_pred EEEcCCC--------------------cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 162 LQVSPDG--------------------TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 162 v~~sp~~--------------------~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
++++|++ ..+++++.|+.+ ++||.++++.+..+..+. ..+.+++++|++++|++|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i--~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~ 266 (317)
T d1vyhc1 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI--KMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCA 266 (317)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE--EEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEE
T ss_pred EEEeeccccceeeccccceeeeeccCCceeEeccCCCEE--EEEECCCCcEEEEEeCCC--CCEEEEEECCCCCEEEEEE
Confidence 9998854 368899999986 689999998888877654 3678999999999999999
Q ss_pred CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 222 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
.|+.|++||+.+++++.++.+|.++|++++|+|++++|+||+.|++|++||
T Consensus 267 ~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999999999999999999999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-39 Score=283.30 Aligned_cols=245 Identities=14% Similarity=0.101 Sum_probs=201.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
.|+|++|+|+|++||+|+.||.|+|||..+++ .+..+.+|.++|.+++|+|++++|+||+.|+++ ++||+......
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i--~vWd~~~~~~~ 86 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA--YVWTLKGRTWK 86 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE--EEEEEETTEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeE--EEEeecccccc
Confidence 49999999999999999999999999997664 667789999999999999999999999999995 78999876654
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc----ceeccCcccceeEEEEcCCCcEEEEeecCCceE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
...........+.++.|+|+++.+++|+.|+.+++|++..... ......|...|.+++|+|++++|++|+.|+++
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v- 165 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC- 165 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE-
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE-
Confidence 4443333334578999999999999999999999998655432 23346789999999999999999999999996
Q ss_pred EEEeeecCCceE----------------EEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc
Q psy4754 182 CRLFDLRADKEV----------------ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245 (304)
Q Consensus 182 i~~~d~~~~~~~----------------~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 245 (304)
++|+....... ...........+.+++|+|+|++|++++.|++|++||..++..+..+.+|..
T Consensus 166 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 244 (371)
T d1k8kc_ 166 -RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244 (371)
T ss_dssp -EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred -EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence 68987543210 1111122223578999999999999999999999999999999999999999
Q ss_pred ceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 246 ~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+|.+++|+|++++|++|+ |+.+++|..+...
T Consensus 245 ~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 245 PLLAVTFITESSLVAAGH-DCFPVLFTYDSAA 275 (371)
T ss_dssp CEEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred cceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence 999999999998888765 7888887665543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.8e-38 Score=264.14 Aligned_cols=269 Identities=23% Similarity=0.305 Sum_probs=225.7
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...|++++|+|++++|+||+.||+|+|||+.+++.+..+.+|..+|.+++|+|++.++++++.++++ ..|+.....
T Consensus 15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI--KLWDFQGFE 92 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC--CEEETTSSC
T ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccc--ccccccccc
Confidence 345569999999999999999999999999999999999999999999999999999999999999886 578877665
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
....+..+. ..+..+.+++++..+++++.|+.+++||+.++..+..+.+|...+.+++|+|+++.+++++.|+.+ +
T Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v--~ 168 (317)
T d1vyhc1 93 CIRTMHGHD--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV--R 168 (317)
T ss_dssp EEECCCCCS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--E
T ss_pred ccccccccc--ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE--E
Confidence 554433322 235678899999999999999999999999988888899999999999999999999999999996 6
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCceeeEEeecc
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVS--------------------GRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 243 (304)
+|+..+.+....+..+. ..+..+.++|+ +.++++|+.|+.|++||..+++.+.++.+|
T Consensus 169 ~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 246 (317)
T d1vyhc1 169 VWVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246 (317)
T ss_dssp EEETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEeeccceeeEEEecCC--CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence 89998887776665443 23455666554 567999999999999999999999999999
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
..+|.+++|+|++++|++|+.|+.|++|++..+.....++ .+... ..+.|+|+++.|
T Consensus 247 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~h~~~V~~~~~s~~~~~l 304 (317)
T d1vyhc1 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN----AHEHFVTSLDFHKTAPYV 304 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE----CCSSCEEEEEECSSSSCE
T ss_pred CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc----CCCCCEEEEEEcCCCCEE
Confidence 9999999999999999999999999999987655333332 23333 347788877653
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.5e-37 Score=270.93 Aligned_cols=269 Identities=17% Similarity=0.170 Sum_probs=206.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee--eeeecCCcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~d 79 (304)
.|++|+|||.++++.........|...|++++|+|++++|++|+.|++|++||+.+++. ...+.+|...|.+++|+|+
T Consensus 27 ~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~ 106 (371)
T d1k8kc_ 27 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 106 (371)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccc
Confidence 46789999999886443333344555699999999999999999999999999986653 4445789999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeE--eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-----------
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----------- 146 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~----------- 146 (304)
++.|++|+.|++++ +|++...... ...........+.+++|+|+++++++|+.|+.|++||....
T Consensus 107 ~~~l~~~s~d~~i~--i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~ 184 (371)
T d1k8kc_ 107 EKKFAVGSGSRVIS--ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184 (371)
T ss_dssp SSEEEEEETTSSEE--EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred cccceeecccCcce--eeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccc
Confidence 99999999999974 5665443322 21222222235678999999999999999999999996532
Q ss_pred -------ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEE
Q psy4754 147 -------CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 147 -------~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+.+.+..+|...|.+++|+|+++.+++++.|+++ ++||+.+.+.+..+..+. .++.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~ 260 (371)
T d1k8kc_ 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV--CLADADKKMAVATLASET--LPLLAVTFITESSLVAA 260 (371)
T ss_dssp BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE--EEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEE
T ss_pred cccccceeeeeeccCccCcEEEEEeecccccccccccCCcc--eEEeeecccceeeeeccc--ccceeeeecCCCCEEEE
Confidence 1234456888999999999999999999999996 689999988888777654 35789999999999887
Q ss_pred EeCCCcEEEEe--CCCceeeE---------------------------------------EeeccccceEEEEEccCC--
Q psy4754 220 GYNDYTINVWD--SLKCCRVN---------------------------------------HLMGHENRVSCLQVSPDG-- 256 (304)
Q Consensus 220 g~~d~~i~iwd--~~~~~~~~---------------------------------------~~~~h~~~i~~l~~sp~g-- 256 (304)
|+ |+.+++|. ...+.... ....|.+.|+++++.|.+
T Consensus 261 g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~ 339 (371)
T d1k8kc_ 261 GH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 339 (371)
T ss_dssp ET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred Ec-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCc
Confidence 76 66666653 22111100 001388899999998855
Q ss_pred --CEEEEeecCCeeeeccccccc
Q psy4754 257 --TAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 257 --~~lasgs~D~~i~~~~~~~~~ 277 (304)
..|+|+|.|++|++|+.+..+
T Consensus 340 ~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 340 KCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp SCSEEEEEETTSEEEEEEHHHHH
T ss_pred ceEEEEEEcCCCeEEEEeCCcCh
Confidence 469999999999999885533
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-36 Score=265.15 Aligned_cols=274 Identities=21% Similarity=0.266 Sum_probs=213.4
Q ss_pred CCceeEEeeccccceEeeeecc--ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--------------
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-------------- 65 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-------------- 65 (304)
+++.+.+|+....+.....-.. .|...|+|++|+|+|++||+|+ |++|+|||+.+++.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (388)
T d1erja_ 36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114 (388)
T ss_dssp CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------
T ss_pred CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccccc
Confidence 3556789998766543221111 2445599999999999999986 8999999998877655443
Q ss_pred ----CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEe
Q psy4754 66 ----GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141 (304)
Q Consensus 66 ----~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iw 141 (304)
.|...|.+++|+|++++|++|+.|+++ ++||....+.+.....+. ..+.++.+++++..+++++.++.+++|
T Consensus 115 ~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v--~i~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~i~~~ 190 (388)
T d1erja_ 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLI--RIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGDRTVRIW 190 (388)
T ss_dssp ----CCCCBEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccCCCCCEEEEEECCCCCcceeccccccc--cccccccccccccccccc--ccccccccccccccccccccceeeeee
Confidence 466779999999999999999999995 789999888877665433 246788999999999999999999999
Q ss_pred cCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc-----eeeeeeEEEEcCCCCE
Q psy4754 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-----ILFGATSVDFSVSGRL 216 (304)
Q Consensus 142 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~ 216 (304)
|..+.........+...+....+.++++.|++++.|+.+ ++||.++.+....+.... +...+.+++|+|++++
T Consensus 191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 268 (388)
T d1erja_ 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV--RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268 (388)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE--EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred eccccccccccccccccccccccCCCCCeEEEEcCCCeE--EEeecccCccceeeccccccccCCCCCEEEEEECCCCCE
Confidence 998877666655555444444445588999999999996 689998877666553221 1235789999999999
Q ss_pred EEEEeCCCcEEEEeCCCce------------eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhhee
Q psy4754 217 LFAGYNDYTINVWDSLKCC------------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLL 282 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~------------~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~ 282 (304)
|++|+.|+.|++||+.++. .......|...|.+++|+|++++|++|+.|++|++||...+.+...+
T Consensus 269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l 346 (388)
T d1erja_ 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346 (388)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 9999999999999976432 24455678999999999999999999999999999998776544443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-35 Score=251.23 Aligned_cols=245 Identities=16% Similarity=0.197 Sum_probs=187.4
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.|...|++++|+|+|++|+||+.||+|++||+.+++.++.+. +|..+|++++|+|+++ +++++.|+++ ++|+....
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v--~~~~~~~~ 86 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHL--KVVPAGGS 86 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEE--EEECSSSS
T ss_pred CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeE--EEeccCCc
Confidence 344559999999999999999999999999999998888774 7999999999999986 5566778885 67886421
Q ss_pred ee-------------Ee--EEeccc-----------------------eeeceeeeEEcCCCCEEEEEeCCCeEEEecCC
Q psy4754 103 KE-------------VA--CYKKDS-----------------------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 103 ~~-------------~~--~~~~~~-----------------------~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
.. .. .+..+. ......+++|+|+++++++|+.|+.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~ 166 (299)
T d1nr0a2 87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 166 (299)
T ss_dssp SSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 10 00 000000 00124578899999999999999999999987
Q ss_pred ccccce-eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeec-CceeeeeeEEEEcCCCCEEEEEeC
Q psy4754 145 KCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVDFSVSGRLLFAGYN 222 (304)
Q Consensus 145 ~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~sg~~ 222 (304)
+.+... ....|..+|.+++|+|+++.+++++.|+.+ ++||+.+......... ..+...+++++|+|++++|++|+.
T Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 167 GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV--IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE--EEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccceEEEcC
Confidence 655432 345789999999999999999999999986 6899887665433221 112246789999999999999999
Q ss_pred CCcEEEEeCCCceee--EEeecc-ccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 223 DYTINVWDSLKCCRV--NHLMGH-ENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 223 d~~i~iwd~~~~~~~--~~~~~h-~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
|+.|++||+.++... .....| ...|.++.+ +++.+|+|||.|++||+|++.
T Consensus 245 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 999999998765432 222333 456666655 567899999999999999863
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-35 Score=250.55 Aligned_cols=262 Identities=15% Similarity=0.070 Sum_probs=198.3
Q ss_pred eEEeeccccceEeeeeccccc-cceeEEEEcC--CCCEEEEeeCCCcEEEEeCCCceee--------eeecCCcCcEEEE
Q psy4754 6 CRLFDLRADKEVACYKKDSIL-FGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRV--------NHLMGHENRVSCL 74 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~-~~i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~~~~~--------~~~~~h~~~V~~l 74 (304)
||.||....+.........+. ..|++++|+| +|.+|++|+.||+|+|||...++.. ..+..|.++|.++
T Consensus 42 i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 121 (325)
T d1pgua1 42 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121 (325)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEE
T ss_pred EEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEE
Confidence 677877666443333333333 3499999998 5679999999999999998654322 2245688999999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCE-EEEEeCCCeEEEecCCccccce---
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVN--- 150 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~sg~~dg~i~iwd~~~~~~~~--- 150 (304)
+|++++++|++++.+....+.+|+..+++.+..+..+. ..+.++.|+|++.+ +++++.|+.+++||..+.+...
T Consensus 122 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~ 199 (325)
T d1pgua1 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS--QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199 (325)
T ss_dssp EECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS--SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred EECCCCCccceeeccccceEEEEeecccccceeeeecc--cccccccccccccceEEEeecccccccccccccccceecc
Confidence 99999999988876443334678877777777665433 35678999999875 6779999999999987655433
Q ss_pred eccCcccceeEEEEcCC-CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc---CCCCEEEEEeCCCcE
Q psy4754 151 HLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS---VSGRLLFAGYNDYTI 226 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~-~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s---~~g~~l~sg~~d~~i 226 (304)
...+|...|.+++|+|+ +.++++++.|+.| ++||+++++.+..+..+.. .+..+.|+ |+|++|++++.|+.|
T Consensus 200 ~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i--~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i 275 (325)
T d1pgua1 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKI--SCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATI 275 (325)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTCCE--EEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEE
T ss_pred cccCCCCccEEeeeccccceeccccccccce--eeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeE
Confidence 34577888999999997 5889999999996 6899999988887765442 23333333 789999999999999
Q ss_pred EEEeCCCceeeEEeeccccc--eEEEEEccC-CCEEEEeecCCeeeeccc
Q psy4754 227 NVWDSLKCCRVNHLMGHENR--VSCLQVSPD-GTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 227 ~iwd~~~~~~~~~~~~h~~~--i~~l~~sp~-g~~lasgs~D~~i~~~~~ 273 (304)
+|||+.+++.+..+..|... +..+++.+. +.+|+|||.|++|++|++
T Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 276 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 99999999999888776543 444555433 357899999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-34 Score=245.78 Aligned_cols=255 Identities=19% Similarity=0.274 Sum_probs=193.2
Q ss_pred eeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC
Q psy4754 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 88 (304)
Q Consensus 9 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~ 88 (304)
|+....+....++ .|...|.+ +++++|++||||+.||+|+|||+.++++++++.+|.++|.+++|+|+ +|++|+.
T Consensus 1 W~~~~~~~~~~l~--GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~ 75 (342)
T d2ovrb2 1 WRRGELKSPKVLK--GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST 75 (342)
T ss_dssp HHHSCCCCCEEEE--CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET
T ss_pred CCCCCCCcCEEEC--CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee
Confidence 4544444444443 34444543 25567899999999999999999999999999999999999999864 9999999
Q ss_pred CCceEEEEeeeCCCeeEeEEecc---------------------------------------------------------
Q psy4754 89 DTTLRCRLFDLRADKEVACYKKD--------------------------------------------------------- 111 (304)
Q Consensus 89 D~~i~~~~wd~~~~~~~~~~~~~--------------------------------------------------------- 111 (304)
|+++ ++|+.............
T Consensus 76 D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (342)
T d2ovrb2 76 DRTL--KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG 153 (342)
T ss_dssp TSCE--EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred cccc--cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence 9996 56665432221110000
Q ss_pred ---cee----------------eceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE
Q psy4754 112 ---SIL----------------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 112 ---~~~----------------~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la 172 (304)
... .......+++++.++++|+.|+.|++||+...+.+..+.+|...+.++++++ ++++
T Consensus 154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 231 (342)
T d2ovrb2 154 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILV 231 (342)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEE
T ss_pred cCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEE
Confidence 000 0011234556788999999999999999999888888999999999888865 5999
Q ss_pred EeecCCceEEEEeeecCCceEEEeecCc-eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee-----ccccc
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-----GHENR 246 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~-----~h~~~ 246 (304)
+++.|+.+ ++||....+....+.... ....+.+ +.++++++++|+.||+|++||+.+++.+.++. +|.+.
T Consensus 232 s~s~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~ 307 (342)
T d2ovrb2 232 SGNADSTV--KIWDIKTGQCLQTLQGPNKHQSAVTC--LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307 (342)
T ss_dssp EEETTSCE--EEEETTTCCEEEEECSTTSCSSCEEE--EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred EEcCCCEE--EEEecccccccccccccceeeeceee--cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCC
Confidence 99999996 689998877766654322 1223344 44566899999999999999999998888764 57889
Q ss_pred eEEEEEccCCCEEEEeecCCe----eeecccccc
Q psy4754 247 VSCLQVSPDGTAFSSGSWDTT----LRDEESKNR 276 (304)
Q Consensus 247 i~~l~~sp~g~~lasgs~D~~----i~~~~~~~~ 276 (304)
|++++|+|++..||+|+.|++ |++||++.+
T Consensus 308 v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 999999999999999999986 889987653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-32 Score=234.27 Aligned_cols=258 Identities=19% Similarity=0.227 Sum_probs=198.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC--CcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~--h~~~V~~l~~s~d 79 (304)
.|++|||||+.+++++..+. .|...|++++|+|+ .+|++|+.||+|++|+....+....... +........++++
T Consensus 31 ~Dg~i~vWd~~~~~~~~~l~--~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (355)
T d1nexb2 31 DDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107 (355)
T ss_dssp TTTEEEEEETTTTEEEEEEE--CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETT
T ss_pred CCCeEEEEECCCCcEEEEEE--CCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccc
Confidence 47899999999998877665 34556999999986 5899999999999999988776655443 3344556677888
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEE---------------------------------e----------cc-----
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACY---------------------------------K----------KD----- 111 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~---------------------------------~----------~~----- 111 (304)
++.+++++.|+++ ++||+......... . .+
T Consensus 108 ~~~~~~~~~d~~i--~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~ 185 (355)
T d1nexb2 108 IKYIVTGSRDNTL--HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185 (355)
T ss_dssp EEEEEEEETTSEE--EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred cceeeeecCCCcE--EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeee
Confidence 8899999999985 67887543211100 0 00
Q ss_pred -------------ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCC
Q psy4754 112 -------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 178 (304)
Q Consensus 112 -------------~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~ 178 (304)
.......++.+++++.++++++.|+.|++||..++..+..+.+|...|.+++++| +.+++++.|+
T Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg 263 (355)
T d1nexb2 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADG 263 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTS
T ss_pred eecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccc
Confidence 0001234667889999999999999999999999988889999999999999975 5899999999
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-EeeccccceEEEEEccCCC
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~ 257 (304)
+| ++||+++.......+.... .....+++++.++++|+ |++|++||+.+++.+. .+.+|.++|++++|+|+ .
T Consensus 264 ~i--~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~ 336 (355)
T d1nexb2 264 SI--RGWDANDYSRKFSYHHTNL---SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-T 336 (355)
T ss_dssp EE--EEEETTTCCEEEEEECTTC---CCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-E
T ss_pred cc--ccccccccceecccccCCc---eEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-e
Confidence 96 6899988776555443322 12235678888887775 8899999999998875 46789999999999987 5
Q ss_pred EEEEeecCCeeeeccc
Q psy4754 258 AFSSGSWDTTLRDEES 273 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~ 273 (304)
.+++++.|+++.+|-+
T Consensus 337 ~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 337 LVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEEESSSCEEEEEE
T ss_pred EEEEEECCCcEEEEEE
Confidence 7889999999877744
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-32 Score=228.47 Aligned_cols=232 Identities=26% Similarity=0.391 Sum_probs=183.1
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
+..+|+|++| +|++||||+.||+|+|||+.+++.++++.+|.++|.+++| ++++|+||+.|+++ ++|++.....
T Consensus 14 ~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i--~~~~~~~~~~ 87 (293)
T d1p22a2 14 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV--RVWDVNTGEM 87 (293)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE--EEEESSSCCE
T ss_pred CCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccc--cccccccccc
Confidence 3455888765 7899999999999999999999999999999999999887 57899999999996 6898876544
Q ss_pred EeEEeccce-----------ee----------------------------ceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 105 VACYKKDSI-----------LF----------------------------GATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 105 ~~~~~~~~~-----------~~----------------------------~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
......... .. ......+.+....+++++.|+.|++||+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~ 167 (293)
T d1p22a2 88 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 167 (293)
T ss_dssp EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred cccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCC
Confidence 332211000 00 000111233456788899999999999999
Q ss_pred cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 146 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
.+.+..+.+|...+..+.++ +..+++++.|+++ ++||+++.+.+..+..+.. . ...+++++.+|++|+.|+.
T Consensus 168 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~--~--v~~~~~~~~~l~sg~~dg~ 239 (293)
T d1p22a2 168 CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI--RLWDIECGACLRVLEGHEE--L--VRCIRFDNKRIVSGAYDGK 239 (293)
T ss_dssp CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE--EEEETTTCCEEEEECCCSS--C--EEEEECCSSEEEEEETTSC
T ss_pred CcEEEEEcccccccccccCC--CCeEEEecCCCEE--EEEecccceeeeeecccce--e--eeeccccceEEEEEcCCCE
Confidence 88888889999899888776 4589999999996 6899999888777665442 2 2346788999999999999
Q ss_pred EEEEeCCC---------ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 226 INVWDSLK---------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 226 i~iwd~~~---------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
|++||+.. ...+..+.+|.++|++++| ++.+|+|||.|++|++||
T Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 99998532 3457788999999999998 467899999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-31 Score=229.08 Aligned_cols=236 Identities=24% Similarity=0.305 Sum_probs=190.5
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
++|++| ++++||||+.||+|+|||+.+++.+..+.+|.++|.+++|+|+ ++|+||+.|+++ ++|+....+.....
T Consensus 16 itc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i--~iw~~~~~~~~~~~ 90 (355)
T d1nexb2 16 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTV--RVWDIKKGCCTHVF 90 (355)
T ss_dssp EEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCE--EEEETTTTEEEEEE
T ss_pred EEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccc--cccccccccccccc
Confidence 567665 5789999999999999999999999999999999999999985 589999999996 68999887776655
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-----------------------cCcccceeEEEEc
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-----------------------MGHENRVSCLQVS 165 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----------------------~~h~~~v~~v~~s 165 (304)
.............+++++.++++++.|+.|++||+.+....... ..|...+. .+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~ 168 (355)
T d1nexb2 91 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVS 168 (355)
T ss_dssp CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEE
T ss_pred ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccc
Confidence 44333333445667889999999999999999998765432211 12223332 345
Q ss_pred CCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc
Q psy4754 166 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245 (304)
Q Consensus 166 p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 245 (304)
++++.++++..|+.+ ++||+++.+.+....... ..+.++.++|+++++++++.|+.|++||..++..+..+.+|..
T Consensus 169 ~~~~~~~~~~~d~~i--~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~ 244 (355)
T d1nexb2 169 GHGNIVVSGSYDNTL--IVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244 (355)
T ss_dssp EETTEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred cccceeeeeccccee--eeeecccccceeeeeccc--cccccccccccceeeecccccceEEeeeccccccccccccccc
Confidence 678899999999986 689999888776665443 3457889999999999999999999999999999999999999
Q ss_pred ceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 246 ~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.|.+++|++ ++|++|+.|++|++||.+...
T Consensus 245 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 245 LVGLLRLSD--KFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp CCCEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccc--ceeeeeecccccccccccccc
Confidence 999999964 699999999999999986654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-31 Score=229.62 Aligned_cols=245 Identities=15% Similarity=0.122 Sum_probs=193.4
Q ss_pred eeEEEEcCCCCEEEEeeCCC-cEEEEeCCCc--eeeeeecCC-cCcEEEEEECC--CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDY-TINVWDSLKC--CRVNHLMGH-ENRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg-~v~iwd~~~~--~~~~~~~~h-~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
+++++|+|+|+.|+.++.+. .|+.|+.... ..+..+.+| ...|++++|+| ++++|+||+.|++| ++||+...
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i--~iWd~~~~ 97 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV--IVWGWTFD 97 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE--EEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCE--EEeeecCC
Confidence 68899999999998776553 4677776543 345567777 46899999998 56799999999996 68988654
Q ss_pred eeEeEEec------cceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCcccceeEEEEcCCCcE-EEE
Q psy4754 103 KEVACYKK------DSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-FSS 173 (304)
Q Consensus 103 ~~~~~~~~------~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-las 173 (304)
+....... ......+.++.|+++++++++++. ++.+.+|+..+++.+..+.+|...|.+++|+|++.. +++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence 33222111 011124678999999999988754 678999998888888889999999999999998864 778
Q ss_pred eecCCceEEEEeeecCCceEEEeecC-ceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEE
Q psy4754 174 GSWDTTLRCRLFDLRADKEVACYKKD-SILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 251 (304)
Q Consensus 174 ~s~d~~i~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~ 251 (304)
++.|+.+ ++||.+..+........ .....+.+++|+|+ +.++++++.|+.|++||..+++.+.++.+|..++.++.
T Consensus 178 ~~~d~~v--~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 178 VGDDGSV--VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EETTTEE--EEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred eeccccc--ccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccce
Confidence 9999986 68998876655544322 22345789999997 68999999999999999999999999999998887777
Q ss_pred Ec---cCCCEEEEeecCCeeeeccccccc
Q psy4754 252 VS---PDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 252 ~s---p~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|+ |+|++|++++.|++|++||+..+.
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred eeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence 76 789999999999999999987644
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-31 Score=224.22 Aligned_cols=234 Identities=19% Similarity=0.254 Sum_probs=177.9
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..|...|++++|+| |+||+.||+|++||+.++ ..+|...|.+++++++ ..+++++.|+++ ++|++...
T Consensus 10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v--~~w~~~~~ 77 (287)
T d1pgua2 10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTL--KVNGITKH 77 (287)
T ss_dssp CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEE--EETTEEEE
T ss_pred CCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccc--cccccccc
Confidence 34566799999987 899999999999998765 3579999999999875 568999999995 68887532
Q ss_pred e---eEeEE--eccc------------------------eeeceeeeEEcCCCCEEEEEeCC-CeEEEecCCccccceec
Q psy4754 103 K---EVACY--KKDS------------------------ILFGATSVDFSVSGRLLFAGYND-YTINVWDSLKCCRVNHL 152 (304)
Q Consensus 103 ~---~~~~~--~~~~------------------------~~~~~~~~~~s~~~~~l~sg~~d-g~i~iwd~~~~~~~~~~ 152 (304)
+ +.... ..+. .........+++++..+++++.+ +.+++|++........+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~ 157 (287)
T d1pgua2 78 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157 (287)
T ss_dssp ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeee
Confidence 1 01100 0000 00012234567788888888776 47999998765544443
Q ss_pred -cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEE-eecCceeeeeeEEEEcCC----------CCEEEEE
Q psy4754 153 -MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVS----------GRLLFAG 220 (304)
Q Consensus 153 -~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s~~----------g~~l~sg 220 (304)
..|..++.+++|+|++++|++|+.|+.+ ++||+.+.+.... +..+. ..+.+++|+|. ++++++|
T Consensus 158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i--~i~d~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~~~~~~~~~~l~sg 233 (287)
T d1pgua2 158 KTPLRAKPSYISISPSETYIAAGDVMGKI--LLYDLQSREVKTSRWAFRT--SKINAISWKPAEKGANEEEIEEDLVATG 233 (287)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEECCSCCCS--SCEEEEEECCCC------CCSCCEEEEE
T ss_pred eeccCCceeEEEeccCccccccccccccc--cceeecccccccccccccc--cccceeeecccccccccccCCCCeeEee
Confidence 4577889999999999999999999996 6899988765432 22222 35788888764 5789999
Q ss_pred eCCCcEEEEeCCC-ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 221 YNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 221 ~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+.|++|++||+.+ .+.+..+.+|.+.|++++|+|++ .|+|++.|++||+|+.
T Consensus 234 s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 9999999999876 44566677899999999999986 5889999999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.3e-31 Score=232.18 Aligned_cols=259 Identities=15% Similarity=0.169 Sum_probs=182.1
Q ss_pred CCceeEEeeccccce-------Eeeeeccccccce---eEEEEcC-CCCEEEEeeCCCcEEEEeCCCceee--------e
Q psy4754 2 GKNHCRLFDLRADKE-------VACYKKDSILFGA---TSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRV--------N 62 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~-------~~~~~~~~~~~~i---~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~--------~ 62 (304)
+|++|||||..+... ..........+.+ ..+.... ++.++++++.||+|++|+....... .
T Consensus 32 ~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~ 111 (393)
T d1sq9a_ 32 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111 (393)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccc
Confidence 689999999876532 1111111111111 1222221 2357889999999999996533211 1
Q ss_pred ee--cCCcCcEEEEEECCCC-----CeEEEEeCCCceEEEEeeeCCCee-----------EeEE----e-ccceeeceee
Q psy4754 63 HL--MGHENRVSCLQVSPDG-----TAFSSGSWDTTLRCRLFDLRADKE-----------VACY----K-KDSILFGATS 119 (304)
Q Consensus 63 ~~--~~h~~~V~~l~~s~d~-----~~l~sgs~D~~i~~~~wd~~~~~~-----------~~~~----~-~~~~~~~~~~ 119 (304)
.+ ..+...+..++|.++. .++++++.|+++ ++|++..... .... . .......+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i--~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (393)
T d1sq9a_ 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT--YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189 (393)
T ss_dssp CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE--EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCE
T ss_pred eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcE--EEEEeecCCcccceeeeeeccceecccceecccCCCCcEEE
Confidence 11 2345667888887753 578999999996 6788742110 0000 0 0001112568
Q ss_pred eEEcCCCCEEEEEeCCCeEEEecCCccccce------eccCcccceeEEEEcCCCcEEEEeecCCce-EEEEeeecCCce
Q psy4754 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVN------HLMGHENRVSCLQVSPDGTAFSSGSWDTTL-RCRLFDLRADKE 192 (304)
Q Consensus 120 ~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~------~~~~h~~~v~~v~~sp~~~~las~s~d~~i-~i~~~d~~~~~~ 192 (304)
++|+|++ ++++|+.|++|++||+.+++.+. .+.+|..+|.+++|+||+++|++|+.|++. .+++||+++++.
T Consensus 190 v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~ 268 (393)
T d1sq9a_ 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 268 (393)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccccee
Confidence 9999987 89999999999999998776543 346799999999999999999999999863 368999998887
Q ss_pred EEEeecC-----------ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE----EEEEccCCC
Q psy4754 193 VACYKKD-----------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS----CLQVSPDGT 257 (304)
Q Consensus 193 ~~~~~~~-----------~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~----~l~~sp~g~ 257 (304)
+..+... .+...|++++|+|++++|++|+.|++|++||+.+++++.++.+|.+.|. .++|+|++.
T Consensus 269 ~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~ 348 (393)
T d1sq9a_ 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348 (393)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCC
Confidence 7766421 1224589999999999999999999999999999999999999998775 478888888
Q ss_pred EEEEee
Q psy4754 258 AFSSGS 263 (304)
Q Consensus 258 ~lasgs 263 (304)
.+++++
T Consensus 349 ~~~~~~ 354 (393)
T d1sq9a_ 349 SLAEPG 354 (393)
T ss_dssp BCSSCC
T ss_pred EEEEcc
Confidence 777654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-31 Score=235.43 Aligned_cols=253 Identities=18% Similarity=0.208 Sum_probs=180.2
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee------eeeecCCcCcEEEE------EECC-CCCeEEEEeCCC
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR------VNHLMGHENRVSCL------QVSP-DGTAFSSGSWDT 90 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~------~~~~~~h~~~V~~l------~~s~-d~~~l~sgs~D~ 90 (304)
.|...|.+++++ +++++|||.|++|+|||..+.+. ......|...+..+ .... +..++++++.|+
T Consensus 12 ~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp CSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred cccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 445569999886 46899999999999999754321 12223344433222 2221 234678999999
Q ss_pred ceEEEEeeeCCCeeEeEE---ec-----cceeeceeeeEEcCC-----CCEEEEEeCCCeEEEecCCccc----------
Q psy4754 91 TLRCRLFDLRADKEVACY---KK-----DSILFGATSVDFSVS-----GRLLFAGYNDYTINVWDSLKCC---------- 147 (304)
Q Consensus 91 ~i~~~~wd~~~~~~~~~~---~~-----~~~~~~~~~~~~s~~-----~~~l~sg~~dg~i~iwd~~~~~---------- 147 (304)
.+ ++|++......... .. .........+.+.++ +.++++++.|+.+++|++....
T Consensus 90 ~v--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 90 DL--LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp CE--EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred cE--EEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 96 67887533221111 10 000011234445443 4688999999999999964211
Q ss_pred --------cceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc----eeeeeeEEEEcCCCC
Q psy4754 148 --------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----ILFGATSVDFSVSGR 215 (304)
Q Consensus 148 --------~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~ 215 (304)
.......+...+.+++|+|++ ++|+|+.|++| ++||+++++.+..+.... +...|++++|+|+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i--~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV--QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE--EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcE--EEEeecccccccccccccccccccceEEEcccccccc
Confidence 011223455668999999998 88999999996 699999888776664332 234689999999999
Q ss_pred EEEEEeCCCc---EEEEeCCCceeeEEee-------------ccccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 216 LLFAGYNDYT---INVWDSLKCCRVNHLM-------------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 216 ~l~sg~~d~~---i~iwd~~~~~~~~~~~-------------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
+|++|+.|++ |++||+.++..+..+. +|.+.|++|+|+||+++|+|||.|++||+||...+.+.
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence 9999998875 9999999888777664 79999999999999999999999999999999887766
Q ss_pred heee
Q psy4754 280 YLLR 283 (304)
Q Consensus 280 ~~~~ 283 (304)
+.++
T Consensus 325 ~~l~ 328 (393)
T d1sq9a_ 325 TTLN 328 (393)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6655
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=8.9e-30 Score=217.54 Aligned_cols=219 Identities=16% Similarity=0.215 Sum_probs=182.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce----e-----------------
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----R----------------- 60 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~----~----------------- 60 (304)
.|++|+|||+.+++.+..+.. +...|.+++|+|++.++++|+.|+.+++|+..... .
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (340)
T d1tbga_ 75 QDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152 (340)
T ss_dssp TTTEEEEEETTTTEEEEEEEC--SCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE
T ss_pred CCCceeeeecccceeEEEEec--ccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc
Confidence 378999999999988776653 44569999999999999999999999999953211 0
Q ss_pred ------------------------eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeec
Q psy4754 61 ------------------------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 116 (304)
Q Consensus 61 ------------------------~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~ 116 (304)
......+...+....+.+.+.++++|+.|+.+ ++||+.+.+.+..+..+. ..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v--~i~d~~~~~~~~~~~~h~--~~ 228 (340)
T d1tbga_ 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQTFTGHE--SD 228 (340)
T ss_dssp ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEE--EEEETTTTEEEEEECCCS--SC
T ss_pred cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceE--EEEECCCCcEEEEEeCCC--CC
Confidence 11112344567888888999999999999995 789999988887776543 35
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~ 194 (304)
+.+++|+|+++++++|+.|+.|++||+.....+..+ ..|...|.+++|+|++++|++|+.|+.| ++||+.+++.+.
T Consensus 229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i--~iwd~~~~~~~~ 306 (340)
T d1tbga_ 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC--NVWDALKADRAG 306 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCE--EEEETTTCCEEE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEE--EEEECCCCcEEE
Confidence 788999999999999999999999999877665443 4677789999999999999999999996 689999999888
Q ss_pred EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 195 ~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.+..+. ..|++++|+|++++|++|+.||+|+|||
T Consensus 307 ~~~~H~--~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 307 VLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCCS--SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCC--CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 887654 4689999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=9.3e-30 Score=215.00 Aligned_cols=213 Identities=18% Similarity=0.191 Sum_probs=165.1
Q ss_pred ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 58 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 58 ~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
|+..+.+.||.++|++|+|+||+++|+||+.|++| ++||+.+++.+..+... +...+.++.|+|++. +++++.|+.
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v--~vWd~~~~~~~~~~~~~-h~~~v~~v~~~~~g~-~~~~~~d~~ 77 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI--NSWDISTGISNRVFPDV-HATMITGIKTTSKGD-LFTVSWDDH 77 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTCCEEECSSCS-CSSCEEEEEECTTSC-EEEEETTTE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeE--EEEECCCCcEEEEEcCC-CCCcEEEEEeeccce-eecccceee
Confidence 45667889999999999999999999999999995 78999988777655321 223578899999986 556677999
Q ss_pred EEEecCCccccc---eecc-------------------------------------CcccceeEEEEcCCCcEEEEeecC
Q psy4754 138 INVWDSLKCCRV---NHLM-------------------------------------GHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 138 i~iwd~~~~~~~---~~~~-------------------------------------~h~~~v~~v~~sp~~~~las~s~d 177 (304)
+++|+....... .... .....+.+++|+|+++.+++++.|
T Consensus 78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999985432100 0000 012346678899999999999999
Q ss_pred CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee---EEeeccccceEEEEEcc
Q psy4754 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV---NHLMGHENRVSCLQVSP 254 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~---~~~~~h~~~i~~l~~sp 254 (304)
+.+ ++||+++.+...... ......+++++|+|++++|++++.|+.|++||..++..+ ..+.+|..+|++++|+|
T Consensus 158 g~i--~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 158 SKV--HVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp SEE--EEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred ccc--ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 986 689998765433221 111235789999999999999999999999998776544 34667999999999999
Q ss_pred CCCEEEEeecCCeeeeccccccc
Q psy4754 255 DGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
++.+|++|+.|++|++|++..+.
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTT
T ss_pred cccceEEEcCCCEEEEEECCCCC
Confidence 99999999999999999987654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.5e-30 Score=220.01 Aligned_cols=271 Identities=11% Similarity=0.006 Sum_probs=188.0
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee---eeeecCCcCcEEEEEECCCC-CeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---VNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~---~~~~~~h~~~V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~ 99 (304)
.|..+|++++|+|++++||+|+.||+|+|||+.++.. +....+|.++|.+++|+|++ .+|++|+.|+++ ++|++
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v--~~w~~ 86 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI--LKVDL 86 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE--EEECS
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce--eeeec
Confidence 4455699999999999999999999999999865432 33334699999999999864 589999999995 78998
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce----eccCc--ccceeEEEEcCCCcEEEE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN----HLMGH--ENRVSCLQVSPDGTAFSS 173 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~h--~~~v~~v~~sp~~~~las 173 (304)
............... ......+.++...+++++.++.+++||+++..... ....+ ........+.+++..+++
T Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (342)
T d1yfqa_ 87 IGSPSFQALTNNEAN-LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV 165 (342)
T ss_dssp SSSSSEEECBSCCCC-SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred ccccccccccccccc-cccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence 876655544332211 12344566778899999999999999976543322 12222 223455667788889999
Q ss_pred eecCCceEEEEeeecCCceEEEeec-CceeeeeeEEE-EcCCCCEEEEEeCCCcEEEEeCCCcee---------e-----
Q psy4754 174 GSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVD-FSVSGRLLFAGYNDYTINVWDSLKCCR---------V----- 237 (304)
Q Consensus 174 ~s~d~~i~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~s~~g~~l~sg~~d~~i~iwd~~~~~~---------~----- 237 (304)
++.|+.+ ++||++..+....... ........+.. +.+++..+++++.|+.+.+|+...... .
T Consensus 166 ~~~d~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 166 GMNNSQV--QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp EESTTEE--EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred ecCCCcE--EEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence 9999996 6899876554222111 11111223333 456678999999999999997543211 1
Q ss_pred -EEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 238 -NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 238 -~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
....+|...|++|+|+|++.+||||+.|++|++||...+.+...+. +....--+.|+|+++.
T Consensus 244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~----~~~~~~~~~~s~~~~~ 306 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA----KFNEDSVVKIACSDNI 306 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----CCSSSEEEEEEECSSE
T ss_pred ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec----CCCCCEEEEEEeCCCE
Confidence 1123567789999999999999999999999999987765333221 2222334566666553
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=2.3e-29 Score=217.00 Aligned_cols=260 Identities=11% Similarity=-0.015 Sum_probs=191.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
++++|.+||+.++..... .+...|++++|+|||+.|++++.+. .|++||..+++.. .+..|...|.+++|+||
T Consensus 22 ~~g~v~v~d~~~~~~~~~----~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spd 96 (360)
T d1k32a3 22 SRGQAFIQDVSGTYVLKV----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRN 96 (360)
T ss_dssp ETTEEEEECTTSSBEEEC----SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTT
T ss_pred ECCeEEEEECCCCcEEEc----cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeeccc
Confidence 357899999999876542 3455699999999999988766553 7999999877544 56789999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE----------eCCCeEEEecCCccccc
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG----------YNDYTINVWDSLKCCRV 149 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg----------~~dg~i~iwd~~~~~~~ 149 (304)
+++|++++.|+.+ ++|++...+....+..+.. .+.+++|+|++++++.+ ..++.+++||+.+++..
T Consensus 97 g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 172 (360)
T d1k32a3 97 GKFAVVANDRFEI--MTVDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172 (360)
T ss_dssp SSEEEEEETTSEE--EEEETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred ccccceecccccc--ccccccccceeeeeecccc--cccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence 9999999999985 7899988877766655432 45679999999999864 34567999998876543
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc-------eEEEee--cCc--------------------
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-------EVACYK--KDS-------------------- 200 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~-------~~~~~~--~~~-------------------- 200 (304)
.+..|...+..++|+|||+.|++++.|+.+ .+|+..... ...... ...
T Consensus 173 -~~~~~~~~~~~~~~spdg~~l~~~s~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 249 (360)
T d1k32a3 173 -AATTENSHDYAPAFDADSKNLYYLSYRSLD--PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249 (360)
T ss_dssp -ECSCSSSBEEEEEECTTSCEEEEEESCCCC--CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred -eecccccccccccccCCCCEEEEEeCCCce--EcccccccceeeccccceEEEecccCccccceECCCcCcccccceee
Confidence 455677788999999999999999999885 467643221 110000 000
Q ss_pred ------e------eeeeeEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 201 ------I------LFGATSVDFSVS-------------GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 201 ------~------~~~~~~~~~s~~-------------g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
. ......+...++ +.++++++.++.|++||+.+++. ..|.+.|.+++||||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~v~~~~~SpD 325 (360)
T d1k32a3 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSAD 325 (360)
T ss_dssp TTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEEEEEEEECTT
T ss_pred cccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----EEecCCcCEEEECCC
Confidence 0 001112222222 23455666788999999887643 235567999999999
Q ss_pred CCEEEEeecCCeeeeccccccc
Q psy4754 256 GTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 256 g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|++|++++.|++|++|+.+++-
T Consensus 326 G~~l~~~~~Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 326 RKTVMVRKDDGKIYTFPLEKPE 347 (360)
T ss_dssp SCEEEEEETTSCEEEEESSCTT
T ss_pred CCEEEEEECCCeEEEEECCCCC
Confidence 9999999999999999987654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.9e-28 Score=204.01 Aligned_cols=267 Identities=13% Similarity=0.194 Sum_probs=189.9
Q ss_pred CCceeEEeeccccceEeeeec-cccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCc-CcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKK-DSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~-~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~ 78 (304)
.|++|||||+.+++....+.. ..+...|.+++|+|++ .+|++|+.||+|++|+............+. .......+.+
T Consensus 31 ~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (342)
T d1yfqa_ 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY 110 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE
T ss_pred CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccc
Confidence 489999999988754333322 2345569999999864 589999999999999998876665554443 3445556677
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEe----ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee---
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYK----KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH--- 151 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~--- 151 (304)
+...+++++.|+++ ++||++......... ............+.+.+..+++++.|+.|++||+........
T Consensus 111 ~~~~~~~~~~~~~~--~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 188 (342)
T d1yfqa_ 111 GDDKLIAASWDGLI--EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188 (342)
T ss_dssp TTTEEEEEETTSEE--EEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred cccccccccccccc--ceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeee
Confidence 88899999999995 689986433222211 111111223456778889999999999999999876554322
Q ss_pred ccCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCce---------EEEee----cCceeeeeeEEEEcCCCCEE
Q psy4754 152 LMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKE---------VACYK----KDSILFGATSVDFSVSGRLL 217 (304)
Q Consensus 152 ~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~---------~~~~~----~~~~~~~~~~~~~s~~g~~l 217 (304)
...+...+.+..+.| ++..+++++.|+.+. +|+...... ..... .......+++++|+|++++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 266 (342)
T d1yfqa_ 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVA--VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp ECSCSSCEEEEEECSGGGCEEEEEETTSEEE--EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred ecccccceeeeEeecCCCCEEEeecCCCeEE--EEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEE
Confidence 234445566666554 667899999999975 565432211 11111 11222457899999999999
Q ss_pred EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 218 FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 218 ~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
++|+.||.|++||+.+++++.++..+ ..+..++|+|+|..|++++.|.+++.|..
T Consensus 267 asg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 267 YTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred EEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 99999999999999999999887644 35567888999999999999999998854
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=1.1e-25 Score=189.01 Aligned_cols=262 Identities=15% Similarity=0.193 Sum_probs=202.7
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
++++|++||+.+++.+..++.. .....++|+|||++| ++++.+++|++||+.+++.++.+..|.. +..++|++++
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g---~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~ 85 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVG---SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDG 85 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEEECC---CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccccc
Confidence 6789999999999887766543 236789999999976 5778899999999999999988877754 5789999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCCeEEEecCCccccceeccCcccce
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
+.++..+.+... +.+|+....+....+.... ....+.++|++..++. +..++.+.+|+..+...+..+..+ ..+
T Consensus 86 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (301)
T d1l0qa2 86 KQVYVTNMASST-LSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (301)
T ss_dssp SEEEEEETTTTE-EEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred ccccccccccce-eeecccccceeeeeccccc---cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence 976665544433 4789998887776665443 2457889999998765 556889999998887766655443 567
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCcee
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCR 236 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~---d~~i~iwd~~~~~~ 236 (304)
..+.++|++..+++++.+... +.+++....+......... .+..++++++++.++.+.. ++.|++||..+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred eEEEeeccccceeeecccccc-cccccccceeeeecccccC---CcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence 889999999988888777654 3567766655555544332 3577899999998776543 46799999999988
Q ss_pred eEEeeccccceEEEEEccCCCEE-EEeecCCeeeeccccccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~l-asgs~D~~i~~~~~~~~~ 277 (304)
+..+..+ ..+.+++|+|||++| ++++.|++|++||...+.
T Consensus 237 ~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 237 TARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 8877654 567999999999976 688889999999987654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=4.5e-26 Score=202.60 Aligned_cols=296 Identities=11% Similarity=0.075 Sum_probs=201.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-----eeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----NHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-----~~~~~h~~~V~~l~~ 76 (304)
+|++|+|||+.+++++..++.. ..+.+++|+|||+++++++.|++|++||+.+++.. +...+|.+.+.+++|
T Consensus 40 ~dg~v~vwD~~t~~~~~~l~~g---~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (426)
T d1hzua2 40 DAGQIALVDGDSKKIVKVIDTG---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK 116 (426)
T ss_dssp TTTEEEEEETTTCSEEEEEECC---SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred CCCEEEEEECCCCcEEEEEeCC---CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence 5799999999999998877643 35889999999999999999999999999887533 233467788888999
Q ss_pred CCCCCeEEEE-eCCCceEEEEeeeCCCeeEeEEeccceee---------ceeeeEEcCCCCEEEEEeC-CCeEEEecCCc
Q psy4754 77 SPDGTAFSSG-SWDTTLRCRLFDLRADKEVACYKKDSILF---------GATSVDFSVSGRLLFAGYN-DYTINVWDSLK 145 (304)
Q Consensus 77 s~d~~~l~sg-s~D~~i~~~~wd~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~ 145 (304)
+|||++|+++ ..++++ ++||............+.... ....+.+++++..++.... .+.+.+++...
T Consensus 117 spDG~~l~v~~~~~~~v--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 117 GYEDRYTIAGAYWPPQF--AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp TCTTTEEEEEEEESSEE--EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCCEEEEeecCCCeE--EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 9999987554 567774 789999887766554332110 1123455666666555443 35555555444
Q ss_pred cccc-eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-EE--EEEe
Q psy4754 146 CCRV-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LL--FAGY 221 (304)
Q Consensus 146 ~~~~-~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l--~sg~ 221 (304)
...+ .....+...+..+.|+|+++++++++.+... +.+++..+.+.+................+.+.+. .+ ++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSE-EEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeeecccc-eeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence 3322 2334667788999999999998887766654 4688988887766654433222222233332222 22 2234
Q ss_pred CCCcEEEEeCC-------CceeeEEeeccccceEEEEEccCCCEEE-------EeecCCeeeeccccccchhheee--c-
Q psy4754 222 NDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTAFS-------SGSWDTTLRDEESKNRYMQYLLR--S- 284 (304)
Q Consensus 222 ~d~~i~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~la-------sgs~D~~i~~~~~~~~~~~~~~~--~- 284 (304)
.|+.+.+|+.. .++....+.+|...+..++|+||+++|+ +++.|++|++|+.......+... .
T Consensus 274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~ 353 (426)
T d1hzua2 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353 (426)
T ss_dssp TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccch
Confidence 56777777643 3466788999999999999999999999 56789999999986644332221 1
Q ss_pred --cccCCce-eEEEEEecCCcc
Q psy4754 285 --RITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 285 --~~~~~~~-~~~~~~~~~~~~ 303 (304)
...++.. -+.+.|+|||+.
T Consensus 354 ~~~~~~~~~rv~~~~fSpDGk~ 375 (426)
T d1hzua2 354 WADLGEGAKRVVQPEYNKRGDE 375 (426)
T ss_dssp HHCCCSSCCCEEEEEECSSSSE
T ss_pred hcccCCCCccEEEEEECCCCCE
Confidence 1222222 256789999873
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=1.5e-26 Score=206.19 Aligned_cols=282 Identities=12% Similarity=0.021 Sum_probs=190.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-----eeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-----VNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~-----~~~~~~h~~~V~~l~~ 76 (304)
.+++|+|||..+++++..++.. ..+..++|+|||+++++++.||++++||+.+++. +....+|.+.+.+..|
T Consensus 40 d~g~v~v~D~~t~~v~~~~~~g---~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKTVLDTG---YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp TTTEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred CCCEEEEEECCCCcEEEEEeCC---CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence 5789999999999998877632 3589999999999999999999999999887653 2333457777888888
Q ss_pred CCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEecccee---------eceeeeEEcCCCCEEE-EEeCCCeEEEecCCc
Q psy4754 77 SPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSIL---------FGATSVDFSVSGRLLF-AGYNDYTINVWDSLK 145 (304)
Q Consensus 77 s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~---------~~~~~~~~s~~~~~l~-sg~~dg~i~iwd~~~ 145 (304)
+|||++| ++++.|+++ ++||..+.+.+..+..+... .....+.+++++..++ +...++.|.+||..+
T Consensus 117 SpDG~~l~vs~~~~~~v--~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQY--VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp TCTTTEEEEEEEETTEE--EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred CCCCCEEEEEcCCCCeE--EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence 9999976 678889995 78999988877665432210 0123577899988764 456689999999876
Q ss_pred cccceec-cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce---ee------------------
Q psy4754 146 CCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---LF------------------ 203 (304)
Q Consensus 146 ~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~---~~------------------ 203 (304)
.+..... ..+...+..++|+|||+++++++.++.. +.++|.++.+.......... ..
T Consensus 195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~-v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 273 (432)
T d1qksa2 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH 273 (432)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB
T ss_pred CCcceEEEEcccCccccceECCCCCEEEEeccccce-EEEeecccceEEEEeccCccccccCcccceecCCCCceecccc
Confidence 5533322 2344568899999999988888776654 46788776655443322110 00
Q ss_pred ---------------------eeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 204 ---------------------GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 204 ---------------------~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
.+....++|++..+++++.+.+.++|+..+ +..|.....++++ ||++.|+++
T Consensus 274 lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~------~~~~~~~~~sv~v-pDg~~la~~ 346 (432)
T d1qksa2 274 MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT------LNPEAEISGSVAV-FDIKAMTGD 346 (432)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT------TCSSHHHHTCEEE-EEGGGCCCS
T ss_pred cCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeeccc------CCCCCCeeeEEEE-Eechhhccc
Confidence 123344555555555555555555554322 1123333344554 788888888
Q ss_pred ecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 263 s~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
+.|+++|+|+..+. .++.++.. =+.+.|+|+|+.
T Consensus 347 s~d~~~k~w~~~~~-------~~l~~~~~~v~~~~fS~DG~~ 381 (432)
T d1qksa2 347 GSDPEFKTLPIAEW-------AGITEGQPRVVQGEFNKDGTE 381 (432)
T ss_dssp SSCCCEEEECHHHH-------HTCCSSCCEEEEEEECTTSSE
T ss_pred ccCCceEecccccc-------cccCCCCCcEEEeEECCCCCE
Confidence 88888888876443 12233333 356889999863
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.5e-25 Score=187.49 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=161.1
Q ss_pred EeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE
Q psy4754 53 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 132 (304)
Q Consensus 53 wd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 132 (304)
|+..+.++.+.++||.+.|.+ +++++|++|+|||.|++| ++||+.+++.+..+..+. ..+.++.|++ .++++|
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i--~vWd~~~~~~~~~~~~h~--~~V~~v~~~~--~~l~s~ 73 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTL--KVWSAVTGKCLRTLVGHT--GGVWSSQMRD--NIIISG 73 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCE--EEEETTTCCEEEECCCCS--SCEEEEEEET--TEEEEE
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeE--EEEECCCCCEEEEEeCCC--CCEEEEEeCC--Cccccc
Confidence 555666778889999999865 466789999999999995 789999998888776543 3577888886 489999
Q ss_pred eCCCeEEEecCCccccceeccCcccceeE--------------------------------------EEEcCCCcEEEEe
Q psy4754 133 YNDYTINVWDSLKCCRVNHLMGHENRVSC--------------------------------------LQVSPDGTAFSSG 174 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~--------------------------------------v~~sp~~~~las~ 174 (304)
+.|+.+++|+............+...+.. ....+....++++
T Consensus 74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (342)
T d2ovrb2 74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG 153 (342)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred eecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence 99999999997654433222222222211 1222334456777
Q ss_pred ecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 175 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 175 s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
+.|+.+ ++||.+..+.+..+..+.. ....+++++.++++|+.|++|++||...++.+..+.+|...+.++++++
T Consensus 154 ~~d~~i--~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 227 (342)
T d2ovrb2 154 AYDFMV--KVWDPETETCLHTLQGHTN----RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227 (342)
T ss_dssp ETTSCE--EEEEGGGTEEEEEECCCSS----CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET
T ss_pred cCCCeE--EEeecccceeeEEEcCccc----ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC
Confidence 778775 5788877776666654432 3445677899999999999999999999999999999999999887765
Q ss_pred CCCEEEEeecCCeeeeccccccchhhee
Q psy4754 255 DGTAFSSGSWDTTLRDEESKNRYMQYLL 282 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~~~~~~~~~~~~ 282 (304)
.+|++|+.|++|++|+.........+
T Consensus 228 --~~l~s~s~d~~i~iwd~~~~~~~~~~ 253 (342)
T d2ovrb2 228 --NILVSGNADSTVKIWDIKTGQCLQTL 253 (342)
T ss_dssp --TEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred --CEEEEEcCCCEEEEEecccccccccc
Confidence 69999999999999987665433333
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2.9e-26 Score=197.37 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=153.7
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 30 TSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 30 ~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
.+-+||| ||+++|+++ +|.|++||..++..++ + +|...|++++|+|||+.|++++.|..-.+++||...+.... +
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~ 81 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F 81 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-e
Confidence 4578999 999998876 5799999998876655 3 69999999999999999988776653336899998766543 2
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc--------e
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT--------L 180 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~--------i 180 (304)
..+ ...+..++|+|+++++++++.++.+++|++.+......+..|...+.+++|+|||++++.++.+.. -
T Consensus 82 ~~~--~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 82 EEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp CCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred eCC--CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence 222 234678999999999999999999999999988877778889999999999999999986543221 1
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
.+++||..+.+........ ..+..++|+|+|++|++++.++.+.+|+..
T Consensus 160 ~~~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~ 208 (360)
T d1k32a3 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208 (360)
T ss_dssp EEEEEETTTTEEEECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ceeeeccccCceeeecccc---cccccccccCCCCEEEEEeCCCceEccccc
Confidence 2468998877654433322 245778999999999999999999999854
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.1e-24 Score=182.46 Aligned_cols=212 Identities=14% Similarity=0.072 Sum_probs=153.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce----------------------
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---------------------- 59 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---------------------- 59 (304)
.|++|++||+.++. ..|...|.+++|++++ .+++++.|+++++|+....+
T Consensus 29 ~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (287)
T d1pgua2 29 YDGRIMEWSSSSMH-------QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 100 (287)
T ss_dssp TTSCEEETTTTEEE-------CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred CCCeEEEEECCCCC-------CCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeec
Confidence 48899999998753 2344558999998764 56789999999999854221
Q ss_pred ------------eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC
Q psy4754 60 ------------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 127 (304)
Q Consensus 60 ------------~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 127 (304)
.+..+. +..+ ..+++++++.++.++.|+.. +++|++...+........ ....+.+++|+|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~v~~~~~~~-v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~ 175 (287)
T d1pgua2 101 DDLLILQSFTGDIIKSVR-LNSP--GSAVSLSQNYVAVGLEEGNT-IQVFKLSDLEVSFDLKTP-LRAKPSYISISPSET 175 (287)
T ss_dssp SEEEEEETTTCCEEEEEE-CSSC--EEEEEECSSEEEEEETTTSC-EEEEETTEEEEEEECSSC-CSSCEEEEEECTTSS
T ss_pred ccceeeeccceeeeeecc-ccce--eeeeeccCcceeeeccccce-eeeeeccccceeeeeeec-cCCceeEEEeccCcc
Confidence 111111 1122 33566777888888777643 578998755444333221 123467899999999
Q ss_pred EEEEEeCCCeEEEecCCccccce-eccCcccceeEEEEcCC----------CcEEEEeecCCceEEEEeeecCCc-eEEE
Q psy4754 128 LLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPD----------GTAFSSGSWDTTLRCRLFDLRADK-EVAC 195 (304)
Q Consensus 128 ~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~----------~~~las~s~d~~i~i~~~d~~~~~-~~~~ 195 (304)
+|++|+.||.|++||+.+..... .+.+|..+|.+++|+|+ +.++++|+.|+++ ++||++... .+..
T Consensus 176 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i--~iw~~~~~~~~~~~ 253 (287)
T d1pgua2 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI--FIYSVKRPMKIIKA 253 (287)
T ss_dssp EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE--EEEESSCTTCCEEE
T ss_pred ccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeE--EEEECCCCCeEEEE
Confidence 99999999999999998776544 46789999999999874 4689999999996 689987644 4444
Q ss_pred eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 196 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+..+. ..+++++|+|++ .|++++.|+.|++|++
T Consensus 254 ~~~h~--~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 254 LNAHK--DGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TTSST--TCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eCCCC--CCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 44443 468999999987 5788899999999985
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.1e-23 Score=179.25 Aligned_cols=262 Identities=13% Similarity=0.055 Sum_probs=186.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcC-----cEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHEN-----RVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~-----~V~~l~ 75 (304)
.|++|++||+.+++....++.......+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.. .+..++
T Consensus 9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~ 88 (337)
T d1pbyb_ 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence 3789999999999988887776666668899999999976 5778899999999999988877765543 345789
Q ss_pred ECCCCCeEEEEeCCCc----------eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 76 VSPDGTAFSSGSWDTT----------LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~----------i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
|+||+++++.++.+.. -.+.+||.........+.... .+..+.|+++++++++++. .+.+||..+
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~--~~~~~d~~~ 163 (337)
T d1pbyb_ 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR--DLHVMDPEA 163 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--SEEEEETTT
T ss_pred EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC--Ccceeeeec
Confidence 9999999988764311 124678888877776665432 3567899999999998864 467899877
Q ss_pred cccceeccCcccceeEEEEcCCCcEE------------------------EEeecCCceEEEEeeecCCceEEE-eecCc
Q psy4754 146 CCRVNHLMGHENRVSCLQVSPDGTAF------------------------SSGSWDTTLRCRLFDLRADKEVAC-YKKDS 200 (304)
Q Consensus 146 ~~~~~~~~~h~~~v~~v~~sp~~~~l------------------------as~s~d~~i~i~~~d~~~~~~~~~-~~~~~ 200 (304)
.+....+..+... ....++|++..+ ...+.+.. +.+|+...++.... +....
T Consensus 164 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 240 (337)
T d1pbyb_ 164 GTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG--LLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp TEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE--EEEEETTTCCEEEEEEEECS
T ss_pred CcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc--EEEEEcCCCcEEEEEecCCC
Confidence 6655444322211 111122222111 11111222 35677666554332 22111
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
.......++|++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|++||....
T Consensus 241 --~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 241 --VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp --SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred --cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 234677899999998876 4789999999999888774 6678899999999999999999999999998653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=8.4e-24 Score=175.63 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=158.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee---------------------
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--------------------- 60 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~--------------------- 60 (304)
.|++|||||+++++++..+. .|...|++++| ++++|++|+.||.|++|+...+..
T Consensus 33 ~Dg~i~vWd~~~~~~~~~l~--~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (293)
T d1p22a2 33 RDNTIKIWDKNTLECKRILT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM 108 (293)
T ss_dssp SSSCEEEEESSSCCEEEEEC--CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE
T ss_pred CCCeEEEEECCCCcEEEEEe--cCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccce
Confidence 48999999999999887765 34556888887 678999999999999999643211
Q ss_pred ----------------------eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeecee
Q psy4754 61 ----------------------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGAT 118 (304)
Q Consensus 61 ----------------------~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~ 118 (304)
...+..|...|..+.+. ...+++++.|+++ ++||+.+.+.+..+..... .+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i--~~~d~~~~~~~~~~~~~~~--~v~ 182 (293)
T d1p22a2 109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI--KVWNTSTCEFVRTLNGHKR--GIA 182 (293)
T ss_dssp EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE--EEEETTTCCEEEEEECCSS--CEE
T ss_pred eecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCce--eeecCCCCcEEEEEccccc--ccc
Confidence 11233566677766665 4578899999985 7899998888776654432 233
Q ss_pred eeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC--------
Q psy4754 119 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------- 190 (304)
Q Consensus 119 ~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~-------- 190 (304)
.+ ++++.++++++.|+.|++||+.+...+....+|...+.. +++++..+++++.|+.+ ++||+...
T Consensus 183 ~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i--~iwd~~~~~~~~~~~~ 256 (293)
T d1p22a2 183 CL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKI--KVWDLVAALDPRAPAG 256 (293)
T ss_dssp EE--EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCE--EEEEHHHHTSTTSCTT
T ss_pred cc--cCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEE--EEEECCCCccccccCC
Confidence 33 445679999999999999999998888888888888765 45678899999999996 68997542
Q ss_pred -ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 191 -KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
..+..+..+. ..+++++| ++.+|++|+.|++|++||
T Consensus 257 ~~~~~~~~~H~--~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 257 TLCLRTLVEHS--GRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTEEEEECCCS--SCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ceeeEEecCCC--CCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 2344444443 35677777 567899999999999997
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=8.7e-22 Score=167.90 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=168.4
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEe
Q psy4754 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYK 109 (304)
Q Consensus 32 ~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~ 109 (304)
++|++++++|++++.|++|.+||+.+++.++++. .|...+.+++|+|||+++ ++++.++.| .+||+.+.+.+..+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v--~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI--YGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE--EEEeCccCeeeeeec
Confidence 5789999999999999999999999999998876 456678899999999976 566678875 689999988876654
Q ss_pred ccc----eeeceeeeEEcCCCCEEEEEe------------CCCeEEEecCCccccceeccCc--ccceeEEEEcCCCcEE
Q psy4754 110 KDS----ILFGATSVDFSVSGRLLFAGY------------NDYTINVWDSLKCCRVNHLMGH--ENRVSCLQVSPDGTAF 171 (304)
Q Consensus 110 ~~~----~~~~~~~~~~s~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l 171 (304)
... ....+..++|+|||++++.++ .+..+.+||..++.....+..+ ...+..+.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence 321 112345789999999988764 4778888987766554433322 2345556667777665
Q ss_pred EEeecCCceEEEEeeecCCceEEEeecC----------------------------------------------------
Q psy4754 172 SSGSWDTTLRCRLFDLRADKEVACYKKD---------------------------------------------------- 199 (304)
Q Consensus 172 as~s~d~~i~i~~~d~~~~~~~~~~~~~---------------------------------------------------- 199 (304)
++++ .+ .+|+..+.+.+..+..+
T Consensus 160 ~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (346)
T d1jmxb_ 160 VAGP---DI--YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234 (346)
T ss_dssp EESS---SE--EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred EeCC---cc--eEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence 5432 11 23443332222211100
Q ss_pred --------------ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 200 --------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 200 --------------~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
.....+..+.+++++.+++.... +.|++||..+++.+..+. +...+.+++|||||++|++++.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d 312 (346)
T d1jmxb_ 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTF 312 (346)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred EECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCC
Confidence 00012345677888887777654 589999999998887765 45679999999999999999999
Q ss_pred Ceeeecccccc
Q psy4754 266 TTLRDEESKNR 276 (304)
Q Consensus 266 ~~i~~~~~~~~ 276 (304)
+.|++||....
T Consensus 313 ~~v~v~D~~t~ 323 (346)
T d1jmxb_ 313 NDLAVFNPDTL 323 (346)
T ss_dssp SEEEEEETTTT
T ss_pred CcEEEEECccC
Confidence 99999998653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.1e-21 Score=163.98 Aligned_cols=270 Identities=12% Similarity=0.070 Sum_probs=174.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEE-EeeCCCcEEEEeCCCceeeeee---cCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~-tg~~dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s 77 (304)
.+++|++||+++...+...+...+...+..++|+|||++|+ ++..|+.|++|++........+ ..+...+..++|+
T Consensus 12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s 91 (333)
T d1ri6a_ 12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD 91 (333)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc
Confidence 57899999998776554444444455589999999999885 5556899999998754322222 2234456789999
Q ss_pred CCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CCeEEEecCCccccce-----
Q psy4754 78 PDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVN----- 150 (304)
Q Consensus 78 ~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~----- 150 (304)
|||++|++++. +++ +++|+..................+.++.++|++++++.++. +..+.+|+..+.....
T Consensus 92 pDg~~l~v~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (333)
T d1ri6a_ 92 HQGQFVFVGSYNAGN--VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 169 (333)
T ss_dssp TTSSEEEEEETTTTE--EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCCCEEeecccCCCc--eeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence 99999998886 445 46777665554433322222224567899999998888764 5779999865533221
Q ss_pred -eccCcccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCC--ce--EEEee----cCceeeeeeEEEEcCCCCEEEE-
Q psy4754 151 -HLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRAD--KE--VACYK----KDSILFGATSVDFSVSGRLLFA- 219 (304)
Q Consensus 151 -~~~~h~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~--~~--~~~~~----~~~~~~~~~~~~~s~~g~~l~s- 219 (304)
........+..++|++++..++..... +.. .+++.... .. ..... ..........+++++++++++.
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~ 247 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV--DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEE--EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred eeeeecCCCccEEEEeccceeEEeeccccCce--EEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee
Confidence 112233456789999999887765543 343 34543222 11 11111 0111123567889999997666
Q ss_pred EeCCCcEEEEeCCCceeeEEee---ccccceEEEEEccCCCEEEEe-ecCCeeeeccccc
Q psy4754 220 GYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDGTAFSSG-SWDTTLRDEESKN 275 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g~~lasg-s~D~~i~~~~~~~ 275 (304)
+..++.+.+|+........... .+...+.+++|+|||++|+++ +.+++|++|+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 248 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 4566789999876543333322 244567899999999986654 5679999996544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=1.7e-19 Score=150.69 Aligned_cols=246 Identities=16% Similarity=0.196 Sum_probs=181.9
Q ss_pred EEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceee
Q psy4754 41 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119 (304)
Q Consensus 41 l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~ 119 (304)
+++++.|++|.+||+.+++.++++... ..+..++|+|||++| ++++.++.| ++||+.+.+.+..+.... .+..
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i--~v~d~~t~~~~~~~~~~~---~~~~ 78 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDV--SIIDTATNNVIATVPAGS---SPQG 78 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEE--EEEETTTTEEEEEEECSS---SEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEE--EEEECCCCceeeeeeccc---cccc
Confidence 457889999999999999988887644 456899999999977 566778875 789999988887765543 3467
Q ss_pred eEEcCCCCEEEE-EeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEee
Q psy4754 120 VDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYK 197 (304)
Q Consensus 120 ~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~ 197 (304)
+.+++++..++. +..++.+.+|+..+.+....+..+ ..+.++.|+|+++.++..+ .+..+ .+|+..+.+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 155 (301)
T d1l0qa2 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV--SVINTVTKAVINTVS 155 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEEEE
T ss_pred cccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccce--eeeeccccceeeecc
Confidence 889999987655 566789999999887766655444 5678899999998776544 45554 689988887776665
Q ss_pred cCceeeeeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeec---CCeeeeccc
Q psy4754 198 KDSILFGATSVDFSVSGRLLFAGYND-YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW---DTTLRDEES 273 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g~~l~sg~~d-~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~---D~~i~~~~~ 273 (304)
... .+..++++|++.+++++..+ +.+.+|+.........+.. ...+..++|++++..++.++. +++|++||.
T Consensus 156 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 156 VGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp CCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred cCC---CceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeec
Confidence 443 35778999999988887765 5677788777666655554 456788999999998876543 468999998
Q ss_pred cccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 274 KNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
..+.... ++.-+...-.++|+|+|+.
T Consensus 232 ~t~~~~~----~~~~~~~~~~va~spdg~~ 257 (301)
T d1l0qa2 232 GTNKITA----RIPVGPDPAGIAVTPDGKK 257 (301)
T ss_dssp TTTEEEE----EEECCSSEEEEEECTTSSE
T ss_pred CCCeEEE----EEcCCCCEEEEEEeCCCCE
Confidence 6654222 2222334456888998874
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=2.5e-21 Score=171.60 Aligned_cols=269 Identities=13% Similarity=0.022 Sum_probs=162.9
Q ss_pred CceeEEeeccccceEeeeecc---ccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEE------
Q psy4754 3 KNHCRLFDLRADKEVACYKKD---SILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVS------ 72 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~---~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~------ 72 (304)
|++|++||+.+++........ .+..-+.+++|+|||+++ +++..++++++||..+++....+.+|...+.
T Consensus 82 d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 161 (426)
T d1hzua2 82 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161 (426)
T ss_dssp TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence 789999999998754333221 222226778889999976 5666899999999999887776666554443
Q ss_pred -----EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCcc
Q psy4754 73 -----CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKC 146 (304)
Q Consensus 73 -----~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~ 146 (304)
.+.+++++..++....+.. ++.+++......+..... ........+.|+|++++++.+. .+..+.+++..+.
T Consensus 162 ~~~~~~i~~s~d~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~ 239 (426)
T d1hzua2 162 EPRVAAIIASHEHPEFIVNVKETG-KVLLVNYKDIDNLTVTSI-GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR 239 (426)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTT-EEEEEECSSSSSCEEEEE-ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred CCceeEEEECCCCCEEEEecCCCC-eEEEEEeccccceeeEEe-ccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence 4445555544443333321 122333332221111000 0111345789999999888875 4678889998877
Q ss_pred ccceecc--CcccceeEEEEcCCCc-EEE--EeecCCceEEEEeeec-------CCceEEEeecCceeeeeeEEEEcCCC
Q psy4754 147 CRVNHLM--GHENRVSCLQVSPDGT-AFS--SGSWDTTLRCRLFDLR-------ADKEVACYKKDSILFGATSVDFSVSG 214 (304)
Q Consensus 147 ~~~~~~~--~h~~~v~~v~~sp~~~-~la--s~s~d~~i~i~~~d~~-------~~~~~~~~~~~~~~~~~~~~~~s~~g 214 (304)
+.+.... .+..+...+.+.+++. .+. +.+.|+.+ .+|+.. ..+....+..+. ..+.+++|+|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v--~~~~~~~~~~~~~~~~~~~~l~g~~--~~v~~v~~sPdg 315 (426)
T d1hzua2 240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI--SLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKS 315 (426)
T ss_dssp EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEE--EEEECCTTTCTTTBTSEEEEEECSS--SCCCCEECCTTC
T ss_pred cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceE--EEeeccccccccccceEeEEEecCC--CceeEEEcCCCC
Confidence 6554332 1222222222222221 111 22223332 234332 224445555543 346889999999
Q ss_pred CEEEE-------EeCCCcEEEEeCCCceeeEEee---------ccccceEEEEEccCCCEEE-Ee----ecCCeeeeccc
Q psy4754 215 RLLFA-------GYNDYTINVWDSLKCCRVNHLM---------GHENRVSCLQVSPDGTAFS-SG----SWDTTLRDEES 273 (304)
Q Consensus 215 ~~l~s-------g~~d~~i~iwd~~~~~~~~~~~---------~h~~~i~~l~~sp~g~~la-sg----s~D~~i~~~~~ 273 (304)
++|++ ++.+++|+|||+.+++...++. .|..+|.+++|||||++++ ++ +.|+.|++||.
T Consensus 316 ~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 316 SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence 99994 4567899999998876655442 4567899999999999763 42 46889999997
Q ss_pred cccc
Q psy4754 274 KNRY 277 (304)
Q Consensus 274 ~~~~ 277 (304)
+...
T Consensus 396 ~T~k 399 (426)
T d1hzua2 396 KTLK 399 (426)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 6654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.4e-20 Score=165.69 Aligned_cols=196 Identities=14% Similarity=-0.005 Sum_probs=142.2
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE--eEEecc-c
Q psy4754 36 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV--ACYKKD-S 112 (304)
Q Consensus 36 ~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~--~~~~~~-~ 112 (304)
+++-++++.+.||+|.|||..+++.++.+..| ..+..++|+|||++|++++.|+++ ++||+.+.+.. ..++.. .
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v--~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKV--NMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEE--EEEETTSSSCCEEEEEECCSE
T ss_pred CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCE--EEEEeeCCCceEEEEEecCCC
Confidence 33345689999999999999999999999877 468999999999999999999985 78998776532 222221 1
Q ss_pred eeeceeeeEEcCCCCEE-EEEeCCCeEEEecCCccccceeccC-----------cccceeEEEEcCCCcEEE-EeecCCc
Q psy4754 113 ILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMG-----------HENRVSCLQVSPDGTAFS-SGSWDTT 179 (304)
Q Consensus 113 ~~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~v~~sp~~~~la-s~s~d~~ 179 (304)
....+.+..|+|||+++ +++..++.|++||..+.+.+..+.. +......+.++|++..++ +.+.++.
T Consensus 107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~ 186 (432)
T d1qksa2 107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186 (432)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence 11223456788999986 6678899999999988877655443 334566788999997754 5555666
Q ss_pred eEEEEeeecCCceEE--EeecCceeeeeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCceeeEE
Q psy4754 180 LRCRLFDLRADKEVA--CYKKDSILFGATSVDFSVSGRLLFAGYND-YTINVWDSLKCCRVNH 239 (304)
Q Consensus 180 i~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-~~i~iwd~~~~~~~~~ 239 (304)
+ .+||..+.+... .+.... .+..++|+|+|+++++++.+ +.+.++|..+.+.+..
T Consensus 187 i--~~~d~~~~~~~~~~~i~~g~---~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 187 I--LLVDYTDLNNLKTTEISAER---FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp E--EEEETTCSSEEEEEEEECCS---SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred E--EEEEccCCCcceEEEEcccC---ccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence 4 688877665433 333322 34788999999988777654 5688888776655443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.85 E-value=2.2e-18 Score=148.87 Aligned_cols=281 Identities=9% Similarity=-0.016 Sum_probs=184.6
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCCcCcE-
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGHENRV- 71 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h~~~V- 71 (304)
...|.+||..+++.+..+... ....++|+|||++|++++ .++.|.+||..+++.+..+..+....
T Consensus 46 ~~~v~v~D~~tg~~~~~~~~~----~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 121 (373)
T d2madh_ 46 IIQQWVLDAGSGSILGHVNGG----FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred CceEEEEECCCCCEEEEEeCC----CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee
Confidence 356899999999988765532 234699999999988764 46789999999998887776665443
Q ss_pred ------EEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEE-EEEeCCCeEEEecCC
Q psy4754 72 ------SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSL 144 (304)
Q Consensus 72 ------~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~ 144 (304)
..+.|+++++.++....+..-.+.+|+....+...... ...++.++++++.+ ++.+.|+.+.+||..
T Consensus 122 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~ 195 (373)
T d2madh_ 122 DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHA 195 (373)
T ss_pred EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec------cceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence 45788888887766655443335678877655443322 23467889998765 567889999999987
Q ss_pred ccccceeccC------cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc----------eeeeeeEE
Q psy4754 145 KCCRVNHLMG------HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----------ILFGATSV 208 (304)
Q Consensus 145 ~~~~~~~~~~------h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~ 208 (304)
.......... +......+.+++++..+ ..+.++.+ .+|+....+......... .......+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (373)
T d2madh_ 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKI--LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred CceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceE--EEEEcCCCeEEEEEeeccccCcEEeeeeccCcceee
Confidence 6654433322 22223455666666544 44556664 467766554322111100 00112334
Q ss_pred EEcCCCCE----------EEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC--EEEEeecCCeeeecccccc
Q psy4754 209 DFSVSGRL----------LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 209 ~~s~~g~~----------l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~~~~ 276 (304)
+++|++.. +++...++.+.+||..+++.+..+. +...+.+++|+|||+ ++++++.|++|++||...+
T Consensus 273 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg 351 (373)
T d2madh_ 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence 55555554 3455667789999999998888764 667899999999998 4578999999999998765
Q ss_pred chhheeeccccCC-ceeEEEEEecCC
Q psy4754 277 YMQYLLRSRITKP-TQGLTVYFQDRG 301 (304)
Q Consensus 277 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 301 (304)
.. ...+..+ ..+-.|.+.++|
T Consensus 352 ~~----~~~~~~~g~~P~~l~~~~~~ 373 (373)
T d2madh_ 352 DQ----DQSTVELGSGPQVLSVMNEA 373 (373)
T ss_pred CE----EEEECCCCCCCcEEEEecCC
Confidence 52 2333322 335556665543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=5.7e-19 Score=150.15 Aligned_cols=234 Identities=15% Similarity=0.084 Sum_probs=152.6
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCc------CcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHE------NRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~------~~V~~l~ 75 (304)
+++|.+||+.+++++..++... ..+..+++|+|||+++ ++++.++.|++||+.+++.+..+.... ..+..++
T Consensus 17 ~~~v~v~D~~t~~~~~t~~~~~-~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~ 95 (346)
T d1jmxb_ 17 PNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95 (346)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred CCEEEEEECCCCCEEEEEEcCC-CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEE
Confidence 6789999999999877665432 2347899999999976 677789999999999998776654322 2456799
Q ss_pred ECCCCCeEEEEeC------------CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE------------
Q psy4754 76 VSPDGTAFSSGSW------------DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA------------ 131 (304)
Q Consensus 76 ~s~d~~~l~sgs~------------D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s------------ 131 (304)
|+|||++++.++. +.. +.+||..+.+....+...........+.+++++..+++
T Consensus 96 ~s~DG~~l~v~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (346)
T d1jmxb_ 96 ISPDGKEVYATVNPTQRLNDHYVVKPPR--LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG 173 (346)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTC
T ss_pred EecCCCEEEEEecCCcceeeeeccCcce--EEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCC
Confidence 9999998877653 333 35666654332211110000001112222333322221
Q ss_pred ----------------------------------------------------EeCCCeEEEecCCccccce-eccCcccc
Q psy4754 132 ----------------------------------------------------GYNDYTINVWDSLKCCRVN-HLMGHENR 158 (304)
Q Consensus 132 ----------------------------------------------------g~~dg~i~iwd~~~~~~~~-~~~~h~~~ 158 (304)
+..+..+.+||+.+..... ....|...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (346)
T d1jmxb_ 174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253 (346)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccce
Confidence 1112234444443333221 12345556
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
+..+.++|++..++....+ . +.+||..+.+.+..+.... .+.+++|+|||++|++++.|+.|++||..+++.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~-~--v~v~d~~~~~~~~~~~~~~---~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 254 YFTGLRSPKDPNQIYGVLN-R--LAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp EEEEEECSSCTTEEEEEES-E--EEEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred eEEEEEeCCCCEEEEecCC-e--EEEEECCCCcEEEEEcCCC---CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEE
Confidence 6777888888777766644 3 4689999988777665433 46899999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4754 239 HLMGHEN 245 (304)
Q Consensus 239 ~~~~h~~ 245 (304)
++.-+.+
T Consensus 328 ~i~~p~g 334 (346)
T d1jmxb_ 328 NIKLPGG 334 (346)
T ss_dssp EEECSSS
T ss_pred EEECCCC
Confidence 8875544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.8e-19 Score=152.67 Aligned_cols=252 Identities=12% Similarity=0.003 Sum_probs=176.3
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCC--cCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccce--
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGH--ENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSI-- 113 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h--~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~-- 113 (304)
.++++++.|++|++||+.+++.++.+..+ ...+.+++|+|||+++ ++++.|+.| .+||+.+++.+........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v--~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL--VKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEE--EEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeE--EEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999999998887653 4567899999999987 566778875 7899999888776654321
Q ss_pred -eeceeeeEEcCCCCEEEEEe------------CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 114 -LFGATSVDFSVSGRLLFAGY------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 114 -~~~~~~~~~s~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
...+..++|+|++++++++. .+..+.+||..+......+. +...+..++|+||++.+++++.+.
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~-- 156 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRDL-- 156 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSSE--
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCCc--
Confidence 12245789999999998875 46788889988877666554 345688999999999999887653
Q ss_pred EEEEeeecCCceEEEeecCceee----e-----------------eeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-
Q psy4754 181 RCRLFDLRADKEVACYKKDSILF----G-----------------ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN- 238 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~----~-----------------~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~- 238 (304)
.+||..+.+....+....... . ........+...+..+..++.+.+|+..++....
T Consensus 157 --~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
T d1pbyb_ 157 --HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp --EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred --ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence 468888877666554322100 0 0001111111111222334568889888776544
Q ss_pred EeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 239 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 239 ~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
.+..|...+.+++++|++.+++.+ |+.|++||.......... ..+.....++|+|+|+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~----~~~~~~~~~~~s~dG~~ 293 (337)
T d1pbyb_ 235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGST 293 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSCE
T ss_pred EecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE----cCCCCEEEEEECCCCCE
Confidence 355677888999999999998776 689999998766533332 22333456888888864
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=3.5e-19 Score=152.72 Aligned_cols=263 Identities=11% Similarity=0.041 Sum_probs=177.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEe----------eCCCcEEEEeCCCceeeeeecCCc----
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG----------YNDYTINVWDSLKCCRVNHLMGHE---- 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg----------~~dg~v~iwd~~~~~~~~~~~~h~---- 68 (304)
.++|.+||..+++.+...+. .....++|+|||++|+.. ..|+.|++||..+++.+..+..+.
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~----g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~ 102 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDG----GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEE----CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred cCeEEEEECCCCcEEEEEEC----CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence 45799999999988766542 234579999999977654 458899999999988776654332
Q ss_pred ---CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecccee-----eceeeeEEcCCCCEEEEEe-CCCeEE
Q psy4754 69 ---NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-----FGATSVDFSVSGRLLFAGY-NDYTIN 139 (304)
Q Consensus 69 ---~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~l~sg~-~dg~i~ 139 (304)
.....++|++++++++.++......+.+||..+.+.+..+...... .....+.+++++..++... .++.+.
T Consensus 103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~ 182 (355)
T d2bbkh_ 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 182 (355)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence 2234679999999888776544334688999888777665432211 0122345666666555432 234444
Q ss_pred EecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe--ecC--------ceeeeeeEEE
Q psy4754 140 VWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY--KKD--------SILFGATSVD 209 (304)
Q Consensus 140 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~--~~~--------~~~~~~~~~~ 209 (304)
+++..+.. ..+...+....+.+++..++.++.++.+ .+|++..++..... ..+ ........++
T Consensus 183 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 255 (355)
T d2bbkh_ 183 ITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKI--HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255 (355)
T ss_dssp EEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEE--EEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred EEeccccc-----ceecceeeeccccCCCCeEEEecCCCeE--EEEecCCCcEEEEeccCCcccceEeeeeeccceEEEE
Confidence 44433221 2334445566778888888888889885 58888776532211 100 0011234578
Q ss_pred EcCCCCEEEEEeCC----------CcEEEEeCCCceeeEEeeccccceEEEEEccCCC--EEEEeecCCeeeeccccccc
Q psy4754 210 FSVSGRLLFAGYND----------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 210 ~s~~g~~l~sg~~d----------~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~~~~~ 277 (304)
++|++..++....+ ..|.+||..+++.+.++. +...+.+++|+|||+ .+++++.|++|++||...+.
T Consensus 256 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 99999987775443 369999999998888775 445689999999997 46788889999999987654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1e-17 Score=141.95 Aligned_cols=261 Identities=13% Similarity=0.158 Sum_probs=165.4
Q ss_pred EEEEeeCCCcEEEEeCCCceeee--eecCCcCcEEEEEECCCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEe-ccceee
Q psy4754 40 LLFAGYNDYTINVWDSLKCCRVN--HLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYK-KDSILF 115 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~-~~~~~~ 115 (304)
.+++++.|++|++|++.....+. ....|.+.|..|+|+|||++|+.++ .|+.| .+|++.......... ......
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i--~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRV--LAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEE--EEEEECTTTCCEEEEEEEECSS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeE--EEEEEeCCCCcEEEeeecccCC
Confidence 46788999999999986543222 2235788999999999999885554 57885 678886543322211 111112
Q ss_pred ceeeeEEcCCCCEEEEEeC-CCeEEEecCCcccc--ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce
Q psy4754 116 GATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~ 192 (304)
.+..++|+||++++++++. ++.|.+|+...... ......+...+.++.++|+++.++.++.+... +.+|+......
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~-i~~~~~~~~~~ 162 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR-ICLFTVSDDGH 162 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE-EEEEEECTTSC
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccce-eeEEEeccCCc
Confidence 3467899999999998875 77899987654332 22344566778899999999998888765543 46788765443
Q ss_pred EEEeec----CceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCce----eeEEee------ccccceEEEEEccCCC
Q psy4754 193 VACYKK----DSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCC----RVNHLM------GHENRVSCLQVSPDGT 257 (304)
Q Consensus 193 ~~~~~~----~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~----~~~~~~------~h~~~i~~l~~sp~g~ 257 (304)
...... ......+..++|++++.++.... ..+...+|+..... ...... ........++++|+++
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 221111 01112346789999999877654 55677788643211 111111 1234567889999998
Q ss_pred EEEE-eecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 258 AFSS-GSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 258 ~las-gs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
++.. +..+.++++|+.....................-++|+|+|+-
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~ 289 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY 289 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCE
Confidence 6654 456789999977654422222222221222345678888874
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=5e-17 Score=140.62 Aligned_cols=260 Identities=8% Similarity=-0.044 Sum_probs=170.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCCcC--
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGHEN-- 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h~~-- 69 (304)
|..++.+||..+++.+....... ...++|+|||+.|+..+ .|++|++||..+++.+..+..+..
T Consensus 44 g~~~~~~~d~~~~~~~~~~~~~~----~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~ 119 (368)
T d1mdah_ 44 GTTENWVSCAGCGVTLGHSLGAF----LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp SSEEEEEEETTTTEEEEEEEECT----TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred CcceEEEEeCCCCcEEEEEeCCC----CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce
Confidence 34567888999998876655332 34689999999887654 478899999999887776654322
Q ss_pred -----cEEEEEECCCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 70 -----RVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 70 -----~V~~l~~s~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
....++|+|||++|+.+. .++++ .+||+.+.+.......... ...+......+++.+.||.+.+|+.
T Consensus 120 ~~~g~~p~~~a~SpDGk~l~va~~~~~~v--~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~Dg~~~~~~~ 192 (368)
T d1mdah_ 120 FSVGPRVHIIGNCASSACLLFFLFGSSAA--AGLSVPGASDDQLTKSASC-----FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCE--EEEEETTTEEEEEEECSSC-----CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred ecccCCccceEECCCCCEEEEEeCCCCeE--EEEECCCCcEeEEeeccCc-----ceEccCCCceEEEEcCCCCEEEEEe
Confidence 123589999999888776 46774 7899999887766543221 1112222345566667777777765
Q ss_pred Cccccc------eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc----------eeeeeeE
Q psy4754 144 LKCCRV------NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----------ILFGATS 207 (304)
Q Consensus 144 ~~~~~~------~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~----------~~~~~~~ 207 (304)
...... ..+..+...+..+.+.+++..+.+.+ +.+ ++++....+......... .......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 268 (368)
T d1mdah_ 193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SSI--LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS--SCC--EEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred cCCceeeeeeecccccccccceeecccccCcEEEEecC--CCE--EEEeecCCceEEEeecccccceeeeeeecCCCcee
Confidence 433221 12234445566778888887777654 333 345554443322211110 0112345
Q ss_pred EEEcCCCCEEEEEeCC---------CcEEEEeCCCceeeEEeeccccceEEEEEccCCC--EEEEeecCCeeeecccccc
Q psy4754 208 VDFSVSGRLLFAGYND---------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~d---------~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~~~~ 276 (304)
++++|++..++....+ ..|.+||..+++.+.++. +...+.+++|+|||+ .+++++.|++|++||...+
T Consensus 269 ~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg 347 (368)
T d1mdah_ 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred EEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence 7889998876654322 358899999998887765 446789999999997 4678888999999998765
Q ss_pred c
Q psy4754 277 Y 277 (304)
Q Consensus 277 ~ 277 (304)
.
T Consensus 348 k 348 (368)
T d1mdah_ 348 Q 348 (368)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=1.2e-15 Score=130.32 Aligned_cols=242 Identities=10% Similarity=-0.051 Sum_probs=159.0
Q ss_pred CceeEEeeccccceEeeeecccc-----ccceeEEEEcCCCCEEEEe--eCCCcEEEEeCCCceeeeeecCCcC------
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI-----LFGATSVDFSVSGRLLFAG--YNDYTINVWDSLKCCRVNHLMGHEN------ 69 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~g~~l~tg--~~dg~v~iwd~~~~~~~~~~~~h~~------ 69 (304)
++.|++||+.+++.......... ......++|+|+|+.++.+ +.+..+.+|+..+++.+..+..+..
T Consensus 77 d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
T d2bbkh_ 77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156 (355)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence 56899999999987665543211 1124568999999977655 4568899999999988777654432
Q ss_pred -cEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc
Q psy4754 70 -RVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147 (304)
Q Consensus 70 -~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 147 (304)
....+.+++|++.++.... ++.+ .+++....... ....+....+.+++..++.++.++.+.+|++....
T Consensus 157 ~~~~~~~~~~dg~~~~v~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (355)
T d2bbkh_ 157 APDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPE-------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 227 (355)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCC--EEEECCCCSCT-------TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred CCcceEEEcCCCCEEEEEecCCCeE--EEEecccccce-------ecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence 2234556666655444332 2222 22222211110 01113345677788889999999999999987654
Q ss_pred cc--eeccCc----------ccceeEEEEcCCCcEEEEeecCCc--------eEEEEeeecCCceEEEeecCceeeeeeE
Q psy4754 148 RV--NHLMGH----------ENRVSCLQVSPDGTAFSSGSWDTT--------LRCRLFDLRADKEVACYKKDSILFGATS 207 (304)
Q Consensus 148 ~~--~~~~~h----------~~~v~~v~~sp~~~~las~s~d~~--------i~i~~~d~~~~~~~~~~~~~~~~~~~~~ 207 (304)
.. .....+ ......++++|++..++..+.++. -.+.+||..+.+.+..+... ..+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~---~~~~~ 304 (355)
T d2bbkh_ 228 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDS 304 (355)
T ss_dssp CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECE
T ss_pred EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC---CCEEE
Confidence 21 111111 123345889999988776554331 23578999988877766543 24678
Q ss_pred EEEcCCCC--EEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCC
Q psy4754 208 VDFSVSGR--LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 208 ~~~s~~g~--~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 256 (304)
++|+|||+ +++++..|++|++||..+++.++++.++.....++.+.++|
T Consensus 305 ~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred EEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 99999998 45667789999999999999999998877666777776654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.69 E-value=4e-14 Score=121.66 Aligned_cols=241 Identities=7% Similarity=-0.073 Sum_probs=160.6
Q ss_pred CceeEEeeccccceEeeeecccccc-----ceeEEEEcCCCCEEEEe--eCCCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF-----GATSVDFSVSGRLLFAG--YNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~-----~i~~~~~~~~g~~l~tg--~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
++.|++||..++++........... ....+.|+++++.++.. ..++.+.+|+....+.... .....++.
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 171 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYH 171 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEE
Confidence 5679999999998866554332111 12568899999865444 4567899999887765443 34466889
Q ss_pred ECCCCCe-EEEEeCCCceEEEEeeeCCCeeEeEEeccce----eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-
Q psy4754 76 VSPDGTA-FSSGSWDTTLRCRLFDLRADKEVACYKKDSI----LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV- 149 (304)
Q Consensus 76 ~s~d~~~-l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~- 149 (304)
++|+++. +++.+.|+++ .+||............... ........+++++ .++..+.++.+.+|+..+....
T Consensus 172 ~s~~g~~~~v~~~~dg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~ 248 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGL--AKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EecCCCcEEEEEcCCCeE--EEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEE
Confidence 9999875 4678889885 6899877665544332111 0112334455555 4455667889999987654321
Q ss_pred -eeccCcc----------cceeEEEEcCCCcEEEE----------eecCCceEEEEeeecCCceEEEeecCceeeeeeEE
Q psy4754 150 -NHLMGHE----------NRVSCLQVSPDGTAFSS----------GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSV 208 (304)
Q Consensus 150 -~~~~~h~----------~~v~~v~~sp~~~~las----------~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
.....+. .....++++|++..++. ...++. +.+||..+++.+..+.... .+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--v~~~d~~t~~~~~~~~~~~---~~~~~ 323 (373)
T d2madh_ 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE--VTSVTGLVGQTSSQISLGH---DVDAI 323 (373)
T ss_pred EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe--EEEEECCCCcEEEEecCCC---CeeEE
Confidence 1111111 22334566666655443 333444 3689998888777665433 46789
Q ss_pred EEcCCCCE--EEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 209 DFSVSGRL--LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 209 ~~s~~g~~--l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
+|+|||+. +++++.|++|++||..+++.+.++.+|......|++.++
T Consensus 324 a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 99999984 567889999999999999999999988888888888765
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.63 E-value=6.6e-15 Score=131.23 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=93.5
Q ss_pred CCceeEEeeccccceEeeeecc---ccccceeEEEEcCCCCEEEEeeC---------CCcEEEEeCCCceeeeeecCCcC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD---SILFGATSVDFSVSGRLLFAGYN---------DYTINVWDSLKCCRVNHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~---~~~~~i~~~~~~~~g~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~h~~ 69 (304)
.++.+.+||+.++++...+... .+..+|.+..|||||++|+.++. ++.+.+||+.+++ +..+..|.+
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~ 112 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPN 112 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCT
T ss_pred cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCc
Confidence 3677999999999876544432 23345899999999999987743 5788999999886 445778899
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc--e--------------eeceeeeEEcCCCCEEEEEe
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS--I--------------LFGATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~--~--------------~~~~~~~~~s~~~~~l~sg~ 133 (304)
.+....|||||+.++... |.. +++|+...+.......... . ......+.|||||++++...
T Consensus 113 ~~~~~~~SPDG~~ia~~~-~~~--l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 113 NTQWVTWSPVGHKLAYVW-NND--IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp TEEEEEECSSTTCEEEEE-TTE--EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cccccccccCcceeeEee-ccc--ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 999999999999999865 555 4788887766543221110 0 00123567999999998875
Q ss_pred C
Q psy4754 134 N 134 (304)
Q Consensus 134 ~ 134 (304)
.
T Consensus 190 ~ 190 (470)
T d2bgra1 190 F 190 (470)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.62 E-value=3.4e-14 Score=124.14 Aligned_cols=260 Identities=12% Similarity=0.048 Sum_probs=168.9
Q ss_pred CceeEEeeccccceEeeeeccc----------------------------cccceeEEEEcCCCCEE-EEeeCCCcEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS----------------------------ILFGATSVDFSVSGRLL-FAGYNDYTINVW 53 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~----------------------------~~~~i~~~~~~~~g~~l-~tg~~dg~v~iw 53 (304)
++.|++|++.+.+++..++--. |........++|||++| ++...+..|.++
T Consensus 20 sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavI 99 (441)
T d1qnia2 20 QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARI 99 (441)
T ss_dssp TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEE
Confidence 5779999999987765543211 11113445567899977 555688999999
Q ss_pred eCCCceeeeeec-CCcCcEEEEEECCCCC--eEEEEeCCCce---------------EEEEeeeCCCeeEeEEeccceee
Q psy4754 54 DSLKCCRVNHLM-GHENRVSCLQVSPDGT--AFSSGSWDTTL---------------RCRLFDLRADKEVACYKKDSILF 115 (304)
Q Consensus 54 d~~~~~~~~~~~-~h~~~V~~l~~s~d~~--~l~sgs~D~~i---------------~~~~wd~~~~~~~~~~~~~~~~~ 115 (304)
|+.+++..+.+. .+......++|+|+++ +++..+.+..- .+..+|..+.+.........
T Consensus 100 Dl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~--- 176 (441)
T d1qnia2 100 RLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG--- 176 (441)
T ss_dssp ETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS---
T ss_pred ECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCC---
Confidence 999998776654 3567888999999998 44444433210 01235555544444333222
Q ss_pred ceeeeEEcCCCCEEEEEeCC-----------------------------------------CeEEEecCCccccceeccC
Q psy4754 116 GATSVDFSVSGRLLFAGYND-----------------------------------------YTINVWDSLKCCRVNHLMG 154 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~d-----------------------------------------g~i~iwd~~~~~~~~~~~~ 154 (304)
....+.++|+++++++.+.+ +.+.+++..+...+..+..
T Consensus 177 ~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv 256 (441)
T d1qnia2 177 NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV 256 (441)
T ss_dssp CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC
T ss_pred CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC
Confidence 23568899999988877543 3444444443333444443
Q ss_pred cccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCceE----------EEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 155 HENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEV----------ACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
. .....+.++|||++++ ++..+.++ .+||+++.... ...... ...+....+|.++|..+.+..-|
T Consensus 257 g-ksPhGv~vSPDGkyl~~~~~~~~tv--sv~d~~k~~~~~~~~~~~~~~~~~~~~-~glgplh~~fd~~g~~yts~~~d 332 (441)
T d1qnia2 257 P-KNPHGLNTSPDGKYFIANGKLSPTV--SVIAIDKLDDLFEDKIELRDTIVAEPE-LGLGPLHTTFDGRGNAYTTLFID 332 (441)
T ss_dssp B-SSCCCEEECTTSCEEEEECTTSSBE--EEEEGGGHHHHTTTSSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTT
T ss_pred C-CCccCceECCCCCEEEEeCCcCCcE--EEEEeehhhhHhhccCCcceEEEeecc-cccCcccceecCCceEEEccccc
Confidence 3 3457899999999765 56678885 68997653211 011111 11234567899999999999999
Q ss_pred CcEEEEeCCC---------c-eeeEEe-----eccccceEEEEEccCCCEEEEe---ecCCeee
Q psy4754 224 YTINVWDSLK---------C-CRVNHL-----MGHENRVSCLQVSPDGTAFSSG---SWDTTLR 269 (304)
Q Consensus 224 ~~i~iwd~~~---------~-~~~~~~-----~~h~~~i~~l~~sp~g~~lasg---s~D~~i~ 269 (304)
..|..|++.. . ..+..+ .||...+.+.+++|||++|+++ |.|+.+-
T Consensus 333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~ 396 (441)
T d1qnia2 333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLP 396 (441)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCC
T ss_pred ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcC
Confidence 9999998531 1 122223 5788888888999999999999 7887663
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=6.7e-14 Score=120.61 Aligned_cols=239 Identities=9% Similarity=-0.029 Sum_probs=139.6
Q ss_pred CceeEEeeccccceEeeeecccc-----ccceeEEEEcCCCCEEEEee-CCCcEEEEeCCCceeeeeecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI-----LFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~g~~l~tg~-~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 76 (304)
|++|++||..++++...+..+.. ......++|+|||++|+.+. .++.+.+||+.+++.++.+..+......
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--- 171 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH--- 171 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc---
Confidence 56799999999988766553221 11234699999999887664 6799999999999888776654432211
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc----eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc--e
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--N 150 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~--~ 150 (304)
......++..+.|+++ ..+++............. .........+.+++..+.+. .+.+.+++....... .
T Consensus 172 ~~~~~~~v~~~~Dg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~ 247 (368)
T d1mdah_ 172 PGAAATHYLGSCPASL--AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKA 247 (368)
T ss_dssp EEETTEEECCCCTTSC--EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEEC
T ss_pred cCCCceEEEEcCCCCE--EEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEe
Confidence 1112344445555553 344443322211111000 00112344555665544433 233444443322111 0
Q ss_pred eccC----------cccceeEEEEcCCCcEEEEeecCC-------ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC
Q psy4754 151 HLMG----------HENRVSCLQVSPDGTAFSSGSWDT-------TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 213 (304)
Q Consensus 151 ~~~~----------h~~~v~~v~~sp~~~~las~s~d~-------~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~ 213 (304)
.... .......++++|++..++....++ .-.+++||..+.+.+..+... ..+.+++|+||
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~~a~spD 324 (368)
T d1mdah_ 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQD 324 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCS
T ss_pred ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC---CceeEEEECCC
Confidence 1111 112234578899887665443222 123578999998877666533 34678999999
Q ss_pred CC--EEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 214 GR--LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 214 g~--~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
|+ +++++..+++|++||..+++.+.++..... ...|++
T Consensus 325 G~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 325 GASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred CCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 97 356677889999999999999988875433 345554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.46 E-value=6.2e-12 Score=109.61 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=147.1
Q ss_pred EEEeeCCCcEEEEeCCCceeeeeecC------------------------------CcCcEEEEEECCCCCeEEEEe-CC
Q psy4754 41 LFAGYNDYTINVWDSLKCCRVNHLMG------------------------------HENRVSCLQVSPDGTAFSSGS-WD 89 (304)
Q Consensus 41 l~tg~~dg~v~iwd~~~~~~~~~~~~------------------------------h~~~V~~l~~s~d~~~l~sgs-~D 89 (304)
++||+.+|+|++|++.+++.++.+.. |........+.|||++|+... .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 67999999999999988766555321 334455566678999886655 45
Q ss_pred CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC--EEEEEeCCCe-----------------EEEecCCccccce
Q psy4754 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR--LLFAGYNDYT-----------------INVWDSLKCCRVN 150 (304)
Q Consensus 90 ~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~sg~~dg~-----------------i~iwd~~~~~~~~ 150 (304)
.. +.++|+.+.+.....+... ..+...++|+|+++ +++..+.+.. +..+|..+.+...
T Consensus 94 ~r--VavIDl~t~k~~~ii~iP~-g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 94 TR--VARIRLDIMKTDKITHIPN-VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp TE--EEEEETTTTEEEEEEECTT-CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred CE--EEEEECCCCcEeeEEecCC-CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 44 5789999887766544211 12457889999988 4444443322 2446666655444
Q ss_pred eccCcccceeEEEEcCCCcEEEEeecCCceE---------------------------------------EEEeeecCCc
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR---------------------------------------CRLFDLRADK 191 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~las~s~d~~i~---------------------------------------i~~~d~~~~~ 191 (304)
++... ..+..+.|+|||+++++.+.+.... +.+++....+
T Consensus 171 qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~ 249 (441)
T d1qnia2 171 QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE 249 (441)
T ss_dssp EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence 43322 3567899999999888776543110 0122222222
Q ss_pred eEEEeecCceeeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCceee--------EEeeccc---cceEEEEEccCCCEE
Q psy4754 192 EVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRV--------NHLMGHE---NRVSCLQVSPDGTAF 259 (304)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~~~~~--------~~~~~h~---~~i~~l~~sp~g~~l 259 (304)
.+..++... .+..++++|||+++++ +..+++|.+||+.+...+ ..+.++. -.....+|+++|..+
T Consensus 250 v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y 326 (441)
T d1qnia2 250 FTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY 326 (441)
T ss_dssp SEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred eEEEEeCCC---CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEE
Confidence 333333322 2467899999998755 678899999997652211 0111111 123556899999999
Q ss_pred EEeecCCeeeeccccccchhh
Q psy4754 260 SSGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~~~ 280 (304)
.|.+.|..|.-|++......+
T Consensus 327 ts~~~ds~v~kw~~~~~~~~~ 347 (441)
T d1qnia2 327 TTLFIDSQVCKWNIADAIKHY 347 (441)
T ss_dssp EEETTTTEEEEEEHHHHHHHH
T ss_pred EcccccceEEEeccchhhhhh
Confidence 999999999999876544333
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.37 E-value=2.1e-09 Score=90.38 Aligned_cols=235 Identities=14% Similarity=0.122 Sum_probs=147.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC--ceEEEEeeeCCCee
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT--TLRCRLFDLRADKE 104 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~--~i~~~~wd~~~~~~ 104 (304)
...-.++|.++|+++++-...+.|..|++...+....+.........+++.+||+++++...+. ...+...+......
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 3356899999999888888899999999887655555545556778999999999887754432 22223333333332
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeC------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE-EeecC
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWD 177 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d 177 (304)
.............+.+.+.++|.+.++... .+.+..++... ..+..+...-...+.++|+||++.|. +-+..
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccC
Confidence 222222222233567889999986665322 23455555332 22222222334567899999998654 44455
Q ss_pred CceEEEEeeecCCce-EEEe-----ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee------cccc
Q psy4754 178 TTLRCRLFDLRADKE-VACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM------GHEN 245 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~-~~~~-----~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~------~h~~ 245 (304)
+.| +.|++..... .... ...........+++.++|++.++....+.|.+||. .++.+.++. ++..
T Consensus 199 ~~I--~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 199 NRL--HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 275 (319)
T ss_dssp TEE--EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred Cce--EEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence 554 5777653311 1111 00011112467899999999999888999999995 677777765 3344
Q ss_pred ceEEEEEccCCCEEEEeecC
Q psy4754 246 RVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 246 ~i~~l~~sp~g~~lasgs~D 265 (304)
.+++++|.|++..+...+.|
T Consensus 276 ~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 276 RSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp BCCEEEECTTSCEEEEEEEC
T ss_pred eeeeEEEeCCCCEEEEEcCC
Confidence 68899999988777665544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.35 E-value=4.1e-09 Score=90.23 Aligned_cols=259 Identities=12% Similarity=0.128 Sum_probs=146.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeeee-cCCcCcEEEEEECCCCCe--EEEEeC-CCceEEEEeeeCCC-
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHL-MGHENRVSCLQVSPDGTA--FSSGSW-DTTLRCRLFDLRAD- 102 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-~~~~~~~-~~h~~~V~~l~~s~d~~~--l~sgs~-D~~i~~~~wd~~~~- 102 (304)
++.|+|+++++.|++... +.+..|.+.. +...... .........++++++++. +++... .++ +..+.+...
T Consensus 42 ~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~--v~~~~~~~~~ 118 (365)
T d1jofa_ 42 ISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA--VYANPFYKFA 118 (365)
T ss_dssp CSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC--EEEEEESSSC
T ss_pred CCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCE--EEEeEccCCC
Confidence 678999999999887754 5688887653 2221111 111223445677888874 333322 223 233332110
Q ss_pred ee---------------EeEEeccceeeceeeeEEcCCCCEEEEEeC-CCeEEEecCCccccce---e--ccCcccceeE
Q psy4754 103 KE---------------VACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVN---H--LMGHENRVSC 161 (304)
Q Consensus 103 ~~---------------~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~---~--~~~h~~~v~~ 161 (304)
.. ...... ....+++++.|+|+++++++++. ...|.+|+......+. . ..........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~ 197 (365)
T d1jofa_ 119 GYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CcceeEeeeecceecCcccCccc-CCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence 00 000000 01113568999999999888764 4678888654322211 1 1223356788
Q ss_pred EEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecC-----------------ceeeeeeEEEEcCCCCEEEEEeC-
Q psy4754 162 LQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKD-----------------SILFGATSVDFSVSGRLLFAGYN- 222 (304)
Q Consensus 162 v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~~g~~l~sg~~- 222 (304)
++|+|+++++.... .+++| .+|+....+........ ........+.++|+|++|.++..
T Consensus 198 i~f~pdg~~~yv~~e~~~~V--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 198 VAMHPTGNYLYALMEAGNRI--CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEECTTSSEEEEEETTTTEE--EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEECCCCceEEEeccCCCEE--EEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 99999999876555 45664 57777654322111100 00112457889999999887632
Q ss_pred C-----CcEEEEeCCCceeeEE---e---eccccceEEEEEcc-CCCEEE-EeecCCeeeeccccccchhheeeccccCC
Q psy4754 223 D-----YTINVWDSLKCCRVNH---L---MGHENRVSCLQVSP-DGTAFS-SGSWDTTLRDEESKNRYMQYLLRSRITKP 289 (304)
Q Consensus 223 d-----~~i~iwd~~~~~~~~~---~---~~h~~~i~~l~~sp-~g~~la-sgs~D~~i~~~~~~~~~~~~~~~~~~~~~ 289 (304)
+ ..|..|+......+.. + ........+++++| +|++|+ ++..+++|.+|+.+.+......+-++..|
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p 355 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEP 355 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCST
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECCCC
Confidence 1 2377776544322221 1 11234567899998 788665 55678999999877665555555555555
Q ss_pred ceeE
Q psy4754 290 TQGL 293 (304)
Q Consensus 290 ~~~~ 293 (304)
..|+
T Consensus 356 ~~~~ 359 (365)
T d1jofa_ 356 GFGM 359 (365)
T ss_dssp TEEE
T ss_pred CCCe
Confidence 5544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.35 E-value=7.1e-10 Score=92.51 Aligned_cols=230 Identities=11% Similarity=-0.039 Sum_probs=143.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC-eeEeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~-~~~~~ 107 (304)
+..++++|||.++++...+++|..|+.... ...+......+.+++|.+||+++++...++.+ ..++.... .....
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~--~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSI--PVVSLVKSDGTVET 105 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSC--EEEEEECTTSCEEE
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceE--EEEEecccccceee
Confidence 678999999999999999999999997643 22344456789999999999998888777775 34554321 11111
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce----------eccCcccceeEEEEcCCCcEEEEeecC
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN----------HLMGHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~----------~~~~h~~~v~~v~~sp~~~~las~s~d 177 (304)
+...........+.+.+++.++++.+.++.+..+|........ ........+..+.+..+ ..+.+.+..
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~ 184 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTEK 184 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETTT
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCCC
Confidence 1111111124678889999888887888888888866543110 01112234556666543 344455555
Q ss_pred CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce-eeEEeeccccceEEEEE---c
Q psy4754 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQV---S 253 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~-~~~~~~~h~~~i~~l~~---s 253 (304)
+.+ +.++.....................+++.++|+++++...++.|..++..... .+..........++++| +
T Consensus 185 ~~i--~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~ 262 (302)
T d2p4oa1 185 MLL--LRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE 262 (302)
T ss_dssp TEE--EEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred CeE--EeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCC
Confidence 554 45665443221111100001124578999999999988888999999865432 23333334456899999 6
Q ss_pred cCCCEEEEeecC
Q psy4754 254 PDGTAFSSGSWD 265 (304)
Q Consensus 254 p~g~~lasgs~D 265 (304)
||++.|..++..
T Consensus 263 ~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 263 GDCTAIYVVTNG 274 (302)
T ss_dssp TTTTEEEEEECT
T ss_pred CCCCEEEEECCC
Confidence 788766554443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=8.6e-10 Score=89.94 Aligned_cols=237 Identities=10% Similarity=0.025 Sum_probs=146.8
Q ss_pred eeEEEEcCCCCEEEE-eeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~~l~t-g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
-..+++.++|.++++ .+..+.+..++..+.........-......+++.++++++++....+. +++++-.....+.
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~--i~~~~~~~~~~~~- 92 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRV--VTLAAGSNNQTVL- 92 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEE--EEECTTCSCCEEC-
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeece--eeeeeeccceeee-
Confidence 478999999996655 456678888876543322211111223467899999988777655544 3455444333322
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
... .......+++.++++++++-.....+..++............-.....+++++|+++.+++...++.+ ..++.
T Consensus 93 -~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i--~~~d~ 168 (260)
T d1rwia_ 93 -PFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV--VKLEA 168 (260)
T ss_dssp -CCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEE--EEECT
T ss_pred -eee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccc--ccccc
Confidence 111 11234678899998877776666777777754432211111223456789999999988777666654 56776
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
...... .+.... ...+..+++.++|+++++-...+.|..++.............-.....|+++++|..+++-..+.+
T Consensus 169 ~~~~~~-~~~~~~-~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~r 246 (260)
T d1rwia_ 169 ESNNQV-VLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 246 (260)
T ss_dssp TTCCEE-ECCCSS-CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTE
T ss_pred ccceee-eeeccc-cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCE
Confidence 554332 222111 234578999999999998888888888876543222111223356789999999999999888888
Q ss_pred eeecccc
Q psy4754 268 LRDEESK 274 (304)
Q Consensus 268 i~~~~~~ 274 (304)
|+..+..
T Consensus 247 I~~i~~~ 253 (260)
T d1rwia_ 247 VVKLTSL 253 (260)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 8866543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.33 E-value=7.4e-11 Score=104.51 Aligned_cols=144 Identities=16% Similarity=0.106 Sum_probs=102.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-----eecCCcCcEEEEEECCCCCeEEEEeCCCc-------eEEEEe
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-----HLMGHENRVSCLQVSPDGTAFSSGSWDTT-------LRCRLF 97 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-----~~~~h~~~V~~l~~s~d~~~l~sgs~D~~-------i~~~~w 97 (304)
..+.|.++++++.. .|+.+.+||+.+++... ++..|...|.+++|||||++|+.++.+.. -.+++|
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 45789999988865 57889999999987654 34456688999999999999988764221 124789
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC------------------cccce
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG------------------HENRV 159 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------------------h~~~v 159 (304)
|+.+++... +.... ..+..+.|||||+.+|.. .++.+.+|+..++........ ..+..
T Consensus 98 d~~~~~~~~-l~~~~--~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~ 173 (470)
T d2bgra1 98 DLNKRQLIT-EERIP--NNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (470)
T ss_dssp ETTTTEECC-SSCCC--TTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred ECCCCcccc-cccCC--ccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence 998776432 22221 235678999999999986 467899999876654432211 12334
Q ss_pred eEEEEcCCCcEEEEeecCCc
Q psy4754 160 SCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~ 179 (304)
..+.|||||+.+|....|.+
T Consensus 174 ~~~~wSPDGk~ia~~~~d~~ 193 (470)
T d2bgra1 174 SALWWSPNGTFLAYAQFNDT 193 (470)
T ss_dssp BCEEECTTSSEEEEEEEECT
T ss_pred cccEECCCCCccceeEecCC
Confidence 56889999999999876654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.31 E-value=6.6e-09 Score=85.44 Aligned_cols=235 Identities=12% Similarity=0.140 Sum_probs=153.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC------CcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG------HENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRA 101 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~------h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~ 101 (304)
-..++++++|+++++-.....|++||.. ++.+..+.. ....-..+++.++.. .++..... .-++..++..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~- 101 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-THQIQIYNQY- 101 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-GCEEEEECTT-
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCC-cccccccccc-
Confidence 4789999999999888888999999975 555544421 111234455555443 44433322 2224455543
Q ss_pred CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 102 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+.....+.... ......+++.+++..+++....+.+.+++.. ++.+.++ ..+......+++.++++.+++....+.
T Consensus 102 g~~~~~~~~~~-~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 GQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp SCEEEEECTTT-CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred ccceeecCCCc-ccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence 34444332221 1234578888889888887777888888853 3434433 345567888999999988888777776
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCceeeEEeecc--ccceEEEEEccCC
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGH--ENRVSCLQVSPDG 256 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g 256 (304)
| ++||... +.+..+........+..+++.|+|+.+++-.. ++.|.+|+ .+++.+.++... ....+.|++.|||
T Consensus 180 V--~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG 255 (279)
T d1q7fa_ 180 V--KVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDG 255 (279)
T ss_dssp E--EEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred e--eeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence 5 5788654 44555533322334678999999998887543 45699998 456666666432 3467899999999
Q ss_pred CEEEEeecCCeeeeccc
Q psy4754 257 TAFSSGSWDTTLRDEES 273 (304)
Q Consensus 257 ~~lasgs~D~~i~~~~~ 273 (304)
.++++ +.+..|++|..
T Consensus 256 ~l~V~-~~n~~v~~fr~ 271 (279)
T d1q7fa_ 256 SVVLA-SKDYRLYIYRY 271 (279)
T ss_dssp EEEEE-ETTTEEEEEEC
T ss_pred cEEEE-eCCCeEEEEEe
Confidence 87665 47899999965
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.23 E-value=7.2e-09 Score=86.79 Aligned_cols=240 Identities=13% Similarity=0.064 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCEEEEeeC-------CCcEEEEeCCCceeeeeecC----CcCcEEEEEECCCCCeEEEEeCCCceEEEEe
Q psy4754 29 ATSVDFSVSGRLLFAGYN-------DYTINVWDSLKCCRVNHLMG----HENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~----h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~w 97 (304)
.-..+|.++|+++++... +|+|..||..++........ -...-..++|.++++.|+.+.....+ ...
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i--~~~ 97 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL--LVV 97 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE--EEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeE--EEE
Confidence 567899999998776433 46799999887754332211 11234579999999877776654443 456
Q ss_pred eeCCCeeEeEE-eccce-eeceeeeEEcCCCCEEEEEeC---------------CCeEEEecCCccccceeccCccccee
Q psy4754 98 DLRADKEVACY-KKDSI-LFGATSVDFSVSGRLLFAGYN---------------DYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 98 d~~~~~~~~~~-~~~~~-~~~~~~~~~s~~~~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
|.......... ..+.. ....+.+++.++|.+.++-.. .|.|..++... + ...+.......+
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~-~~~~~~~~~~pN 175 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q-MIQVDTAFQFPN 175 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C-EEEEEEEESSEE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-c-eeEeeCCcceee
Confidence 65543322111 11111 112467889999987666321 23454444321 1 222222333456
Q ss_pred EEEEcCCCc-----EEEEeecCCceEEEEeeecCCceEEE------eecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy4754 161 CLQVSPDGT-----AFSSGSWDTTLRCRLFDLRADKEVAC------YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229 (304)
Q Consensus 161 ~v~~sp~~~-----~las~s~d~~i~i~~~d~~~~~~~~~------~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iw 229 (304)
.++|+|++. .+++-+..+.| +.||+.....+.. +... .......+++.++|+++++....+.|.+|
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i--~~~d~~~~g~~~~~~~~~~~~~~-~~~~pdGiavD~~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKL--WSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEE--EEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred eeEECCCCCcceeEEEEEeecccce--EEeeccCccccceeeEEEEcccc-ccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence 889988764 34444555554 5677654332221 1111 11234578999999999998888999999
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCC-EEEEeecCCeeeeccccc
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~ 275 (304)
|...+..+..+..+...+++++|.||++ .++|.+.+++|.-.+.+.
T Consensus 253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 9887776666766667889999999986 667888888887665433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.7e-08 Score=79.12 Aligned_cols=237 Identities=13% Similarity=0.047 Sum_probs=136.6
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEe-eCCC--cEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg-~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
+|.|.|...++....... ...+.+.+|||||+.||-. ...+ .+.+.+...+.. +.+..+.+......|+|+|+
T Consensus 20 ~l~i~d~dG~~~~~l~~~---~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRS---PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETTSCSCEEEEEE---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSS
T ss_pred EEEEEcCCCCCcEEEecC---CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCC
Confidence 577778777655444322 2236788999999988744 3333 355555554433 33445678888999999999
Q ss_pred eEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeE--EEecCCccccceeccCccc
Q psy4754 82 AFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTI--NVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 82 ~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i--~iwd~~~~~~~~~~~~h~~ 157 (304)
.++..+... ......+............. ........+++++..++.. ..++.. ...++.... ......+..
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~ 171 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASGQIRQVTDG---RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGS 171 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEECCCC---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSS
T ss_pred eeeEeeecCCccceeecccccccceeeeec---cccccccccccccccceecccccCCceEeeeeccccc-ceeeecccc
Confidence 887665433 22122222222222111111 1112234466666655444 445544 444544432 223344556
Q ss_pred ceeEEEEcCCCcEEEEeecCC-ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC---CCcEEEEeCCC
Q psy4754 158 RVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLK 233 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~d~-~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~---d~~i~iwd~~~ 233 (304)
......++|+++.++..+.++ ...+.+.+....... ..... .......|+|||+.|+..+. ...+.++++..
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg 247 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 247 (269)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred cccccccccccceeEEEeecCCceeeeEeecccccce-EeecC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 677788999999888766544 433445555544332 22221 12356789999999876443 24578888876
Q ss_pred ceeeEEeeccccceEEEEEcc
Q psy4754 234 CCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp 254 (304)
+. ...+....+.+...+|||
T Consensus 248 ~~-~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 248 RF-KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CC-EEECCCSSSEEEEEEECC
T ss_pred CC-EEEEeCCCCcEEeEEeCC
Confidence 54 455666777888899998
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=1.3e-08 Score=82.65 Aligned_cols=198 Identities=10% Similarity=0.076 Sum_probs=123.1
Q ss_pred EEEEEECCCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 71 VSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
-..|++.++|+.+++.. ..+.+ ..++....... ..... .......+++++++..+++....+.+++++..+...+
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i--~~~~~~~~~~~-~~~~~-~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRV--VKLATGSTGTT-VLPFN-GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEE--EEEC----CEE-ECCCC-SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred CCEEEEcCCCCEEEEEcCCCCEE--EEEcCCCceEE-EeccC-CccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence 36899999999766654 33443 33443322211 11111 1223467889999988777777777777765544333
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iw 229 (304)
.... ....+.++++.++++++++-..+..+ ..++...... ..... ........+++.|+|+++++...++.|..+
T Consensus 92 ~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~--~~~~~~~~~~-~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 92 LPFD-GLNYPEGLAVDTQGAVYVADRGNNRV--VKLAAGSKTQ-TVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp CCCC-SCCSEEEEEECTTCCEEEEEGGGTEE--EEECTTCSSC-EECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred eeee-eeeecccccccccceeEeeccccccc--ccccccccee-eeeee-cccCCcceeeecCCCCEeeecccccccccc
Confidence 2222 23467899999999887765545443 3454433222 11111 112345788999999998888888889999
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+...................|++.++|.++++....+.|..++.....
T Consensus 167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~ 214 (260)
T d1rwia_ 167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 214 (260)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence 976544333222445667899999999999998888888777654443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.07 E-value=2e-07 Score=76.27 Aligned_cols=222 Identities=10% Similarity=0.128 Sum_probs=137.8
Q ss_pred CceeEEeeccccceEeeeecccc----ccceeEEEEcCC-CCEEE-EeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI----LFGATSVDFSVS-GRLLF-AGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~----~~~i~~~~~~~~-g~~l~-tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~ 75 (304)
...|++||.+. +.+..+..... ...-..+++.++ +..++ ..+.++.|..++.. +.....+. ........++
T Consensus 43 n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~a 120 (279)
T d1q7fa_ 43 NHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVT 120 (279)
T ss_dssp GTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEE
T ss_pred CCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceec
Confidence 45688888764 44444432211 112345565544 33443 44566788888864 55554442 3445677899
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec--c
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--M 153 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~ 153 (304)
+.++++++++...... +.+++.. ++.+..+...........+++.+++..+++....+.|.+||.. ++.+.++ .
T Consensus 121 vd~~G~i~v~~~~~~~--~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~ 196 (279)
T d1q7fa_ 121 VDNKGRIIVVECKVMR--VIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE 196 (279)
T ss_dssp ECTTSCEEEEETTTTE--EEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCT
T ss_pred cccCCcEEEEeeccce--eeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeeccc
Confidence 9999988777655444 3455543 3444444332223345677888988888888888999999954 4444444 2
Q ss_pred CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
+.......|++.|+|+++++-+.++.. +.+++. +++.+..+........+..+++.|+|.++++ +.++.|++|....
T Consensus 197 g~~~~P~giavD~~G~i~Vad~~~~~~-v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 197 GITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 273 (279)
T ss_dssp TTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred ccccCCcccccccCCeEEEEECCCCcE-EEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeee
Confidence 345568899999999988775544432 457774 4555555543332234678999999987665 5688999998654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.05 E-value=8.5e-08 Score=81.81 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=105.9
Q ss_pred CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe---CCCeEEEecC
Q psy4754 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDS 143 (304)
Q Consensus 67 h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~---~dg~i~iwd~ 143 (304)
...++.-|+|+|+++.|.+...++ + ..|.+.....+..............+.++++++.++... ..+.|..+.+
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~-~--~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~ 114 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKK-W--SSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTE-E--EEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCc-E--EEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence 344566799999999998877654 3 344443332222221111111245677888888543322 2355554432
Q ss_pred Ccc------------ccc----ee-ccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE---EeecCceee
Q psy4754 144 LKC------------CRV----NH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA---CYKKDSILF 203 (304)
Q Consensus 144 ~~~------------~~~----~~-~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~---~~~~~~~~~ 203 (304)
... ..+ .. .......+.++.|+|||++++++..... ++++|+......+. .........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d-~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T d1jofa_ 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN-KLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCC-EEEEEEccCCCceeeccceeecCCCC
Confidence 110 000 00 0111234789999999998887764222 24667654332211 111111113
Q ss_pred eeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCcee--eEEee-----------------ccccceEEEEEccCCCEEEEee
Q psy4754 204 GATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCR--VNHLM-----------------GHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~~~~--~~~~~-----------------~h~~~i~~l~~sp~g~~lasgs 263 (304)
....++|+|+++++.+ ...+++|.+|+...... +.... .+......+.++|||++|.++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 4678999999998755 55678899998754322 11111 1223456789999999987764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.6e-07 Score=74.60 Aligned_cols=219 Identities=11% Similarity=0.069 Sum_probs=121.5
Q ss_pred cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC
Q psy4754 49 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 127 (304)
Q Consensus 49 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 127 (304)
.|.|-|.. |...+.+..+...+...+|||||+.|+-..... ...+.+.+............. .......++|+++
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS---SCEEEEEECTTSS
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeee---cccccceecCCCC
Confidence 46666654 333334444567788999999999987554333 222334444443332222211 1234678999999
Q ss_pred EEEEEeC-CCeEEEec--CCccccceeccCcccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCceEEEeecCceee
Q psy4754 128 LLFAGYN-DYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILF 203 (304)
Q Consensus 128 ~l~sg~~-dg~i~iwd--~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~ 203 (304)
.++.... ++...++. .... ................++++++.+. +...++...+...++............ .
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~---~ 171 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG---S 171 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS---S
T ss_pred eeeEeeecCCccceeecccccc-cceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccc---c
Confidence 8887553 33322222 2211 1222233334444556777776544 444455555556666555433222221 2
Q ss_pred eeeEEEEcCCCCEEEEEeCC-CcEEEE--eCCCceeeEEeeccccceEEEEEccCCCEEEEeecC---Ceeeeccccccc
Q psy4754 204 GATSVDFSVSGRLLFAGYND-YTINVW--DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRDEESKNRY 277 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d-~~i~iw--d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D---~~i~~~~~~~~~ 277 (304)
......++|+++.++..+.+ +...+| +...+. .....+........|||||+.|+-.+.. ..|.+++.+...
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccccccccccceeEEEeecCCceeeeEeeccccc--ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 34567899999998886544 444444 544433 2333455667788999999998855543 345666665544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.00 E-value=1.3e-07 Score=78.32 Aligned_cols=200 Identities=12% Similarity=0.138 Sum_probs=125.5
Q ss_pred CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc
Q psy4754 69 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 148 (304)
Q Consensus 69 ~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~ 148 (304)
.++..+++.|||+++++...+++| +.||....... ..... ..+..++|+++++++++...++.+..|+......
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I--~~i~p~g~~~~-~~~~~---~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEI--VSITPDGNQQI-HATVE---GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEE--EEECTTCCEEE-EEECS---SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCcCCEEECCCCCEEEEeCCCCEE--EEEeCCCCEEE-EEcCC---CCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence 368899999999999998888874 45664433222 12221 1356899999999988888888888887543221
Q ss_pred -ceec--cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC--------ceeeeeeEEEEcCCCCEE
Q psy4754 149 -VNHL--MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD--------SILFGATSVDFSVSGRLL 217 (304)
Q Consensus 149 -~~~~--~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~s~~g~~l 217 (304)
...+ .........+++.++++.+++-+.++.+ +.++............. ......+.+.+.. +.++
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~ 178 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAI--WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLY 178 (302)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEE--EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEE
T ss_pred ceeeccccCCccccceeEEccCCCEEeeccccccc--eeeeccCCcceeEecCCccceeeccCcccccccccccC-Ccee
Confidence 1111 1223457889999999988887777764 56666654332211111 1112234555543 3455
Q ss_pred EEEeCCCcEEEEeCCCceeeEE--eeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 218 FAGYNDYTINVWDSLKCCRVNH--LMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 218 ~sg~~d~~i~iwd~~~~~~~~~--~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
++....+.|..++......... ..........++|+++|.++++...++.|..++.+.++
T Consensus 179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~ 240 (302)
T d2p4oa1 179 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST 240 (302)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred eecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE
Confidence 5566778888887654322211 11123345679999999999998888988888765443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=3.3e-06 Score=70.15 Aligned_cols=222 Identities=9% Similarity=0.082 Sum_probs=130.3
Q ss_pred ceeEEeeccccceEeeeeccccc-cc-eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc----CcEEEEEEC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSIL-FG-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE----NRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~-~~-i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~----~~V~~l~~s 77 (304)
++|..||+.+++........... .+ -..++|.++|..++.+.....+...+.............. .....+++.
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d 125 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD 125 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEEC
Confidence 46778888887653322211111 11 4679999999877777777778888986543221111111 124678999
Q ss_pred CCCCeEEEEeCCC-------------ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC----EE-EEEeCCCeEE
Q psy4754 78 PDGTAFSSGSWDT-------------TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR----LL-FAGYNDYTIN 139 (304)
Q Consensus 78 ~d~~~l~sgs~D~-------------~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~l-~sg~~dg~i~ 139 (304)
++|++.+|-.... .- ++|-+........... .....+.++|+++++ .| ++-+..+.|.
T Consensus 126 ~~G~lyvtd~~~~~~~~~~~~~~~~~~G--~v~~~~~dg~~~~~~~--~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~ 201 (314)
T d1pjxa_ 126 YEGNLWITAPAGEVAPADYTRSMQEKFG--SIYCFTTDGQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW 201 (314)
T ss_dssp TTSCEEEEECBCBCTTSCCCBTTSSSCE--EEEEECTTSCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred CCCCEEEecCccCcccccccceeccCCc--eEEEEeecCceeEeeC--CcceeeeeEECCCCCcceeEEEEEeecccceE
Confidence 9999888743211 11 2333322111111111 112245788888765 34 4446678899
Q ss_pred EecCCccccce------eccC-cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC
Q psy4754 140 VWDSLKCCRVN------HLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV 212 (304)
Q Consensus 140 iwd~~~~~~~~------~~~~-h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 212 (304)
.||+.....+. .+.+ +......+++.++|+++++....+.| ..||.+.++....+.... ..+++++|.|
T Consensus 202 ~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I--~~~dp~~g~~~~~i~~p~--~~~t~~afg~ 277 (314)
T d1pjxa_ 202 SYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI--EVFGPDGGQPKMRIRCPF--EKPSNLHFKP 277 (314)
T ss_dssp EEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE--EEECTTCBSCSEEEECSS--SCEEEEEECT
T ss_pred EeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE--EEEeCCCCEEEEEEECCC--CCEEEEEEeC
Confidence 88865332221 1211 22345689999999987776666664 578877666544443322 2357899999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCC
Q psy4754 213 SGR-LLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 213 ~g~-~l~sg~~d~~i~iwd~~~ 233 (304)
+++ ++++.+..+.|.-++...
T Consensus 278 d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 278 QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEECCCCcEEEEECCC
Confidence 997 556666778888777543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.9e-06 Score=75.65 Aligned_cols=260 Identities=10% Similarity=-0.013 Sum_probs=141.0
Q ss_pred CceeEEeeccccceEeeeecc-ccccceeEEEEcCCCCEEEEe---------eCCCcEEEEeCCCceeee--eecCCcCc
Q psy4754 3 KNHCRLFDLRADKEVACYKKD-SILFGATSVDFSVSGRLLFAG---------YNDYTINVWDSLKCCRVN--HLMGHENR 70 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~g~~l~tg---------~~dg~v~iwd~~~~~~~~--~~~~h~~~ 70 (304)
++.|.+||+.+++....+... .....+....||||+++++.+ +..+...++|+.+++... ........
T Consensus 36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~ 115 (465)
T d1xfda1 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (465)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccc
Confidence 567999999999764433332 233457888999999987765 345788999998775432 22233445
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc--eee-------------c-eeeeEEcCCCCEEEEEeC
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS--ILF-------------G-ATSVDFSVSGRLLFAGYN 134 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~--~~~-------------~-~~~~~~s~~~~~l~sg~~ 134 (304)
+.-..|||||+.|+-.. ++.+ ++.+...+..++...... ..+ . -..+-|||||++||....
T Consensus 116 l~~~~wSPDG~~iafv~-~~nl--~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~ 192 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIF-ENNI--YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (465)
T ss_dssp CSBCCBCSSTTCEEEEE-TTEE--EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred cceeeeccCCceEEEEe-cceE--EEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence 55678999999887665 4443 566665554443322110 000 1 135668999999987632
Q ss_pred -CCeE---------------------------------EEecCCccccce------eccCcccceeEEEEcCCCcEEEEe
Q psy4754 135 -DYTI---------------------------------NVWDSLKCCRVN------HLMGHENRVSCLQVSPDGTAFSSG 174 (304)
Q Consensus 135 -dg~i---------------------------------~iwd~~~~~~~~------~~~~h~~~v~~v~~sp~~~~las~ 174 (304)
+..| .++|+.+..... ........+..+.|+|+++.++..
T Consensus 193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~ 272 (465)
T d1xfda1 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW 272 (465)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEE
Confidence 2222 333332211100 001122346778999999866543
Q ss_pred e-cCC-ceEEEEeeecCCceEEEeecCce---eeeeeEEEEcCCCCEEE---EEeCCC--cEEEEeC------CCceeeE
Q psy4754 175 S-WDT-TLRCRLFDLRADKEVACYKKDSI---LFGATSVDFSVSGRLLF---AGYNDY--TINVWDS------LKCCRVN 238 (304)
Q Consensus 175 s-~d~-~i~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~---sg~~d~--~i~iwd~------~~~~~~~ 238 (304)
. .++ ...+.++|..+++....+..... ........|+|+|+.++ ....+| .+....+ ..+..+.
T Consensus 273 ~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~ 352 (465)
T d1xfda1 273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ 352 (465)
T ss_dssp EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred EccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeE
Confidence 3 232 33456788888776544432110 00113456899998432 222333 3333221 1222233
Q ss_pred EeeccccceEEE-EEccCCCEE-EEeecC
Q psy4754 239 HLMGHENRVSCL-QVSPDGTAF-SSGSWD 265 (304)
Q Consensus 239 ~~~~h~~~i~~l-~~sp~g~~l-asgs~D 265 (304)
.+....-.|..+ +|++++..| .++..+
T Consensus 353 ~LT~G~w~V~~i~~~d~~~~~vyF~a~~~ 381 (465)
T d1xfda1 353 SITSGDWDVTKILAYDEKGNKIYFLSTED 381 (465)
T ss_dssp BSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred EeccCCceEEEEEEEcCCCCEEEEEEeCC
Confidence 333333345554 688876544 355443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=4.1e-07 Score=80.04 Aligned_cols=224 Identities=13% Similarity=0.118 Sum_probs=127.8
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC---CcCcEEEEEECCCCCeEEEEeC---------CCceEEEEeee
Q psy4754 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVSCLQVSPDGTAFSSGSW---------DTTLRCRLFDL 99 (304)
Q Consensus 32 ~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~s~d~~~l~sgs~---------D~~i~~~~wd~ 99 (304)
..|.+++.++.. ..+|.+.+||+.+++....+.. ..-.+....||||+++++.... .+. ++++|+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~--~~i~d~ 98 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY--YVLSKI 98 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE--EEEEES
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeecccc--EEEEEc
Confidence 468888877654 5678999999987754322222 2235667889999998776542 222 467888
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-cCccc-----------------ceeE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHEN-----------------RVSC 161 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~-----------------~v~~ 161 (304)
.+++.............+....|||||+.+|-.. ++.+.+.+..+...++.. .+-.. .-.+
T Consensus 99 ~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred cCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence 7665432211111111233578999999988765 677888886654433211 11111 1246
Q ss_pred EEEcCCCcEEEEeecCCc-e-------------------------------EEEEeeecCCceEEEe-ecC---ceeeee
Q psy4754 162 LQVSPDGTAFSSGSWDTT-L-------------------------------RCRLFDLRADKEVACY-KKD---SILFGA 205 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~-i-------------------------------~i~~~d~~~~~~~~~~-~~~---~~~~~~ 205 (304)
+-|||||+.||....|.+ + ++.++|+.+....... ... .....+
T Consensus 178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~ 257 (465)
T d1xfda1 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (465)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence 779999999998764433 2 1122232222111000 000 000124
Q ss_pred eEEEEcCCCCEEEEEeC-C---CcEEEEeCCCceeeEEeec-cccce----EEEEEccCCCEE
Q psy4754 206 TSVDFSVSGRLLFAGYN-D---YTINVWDSLKCCRVNHLMG-HENRV----SCLQVSPDGTAF 259 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~-d---~~i~iwd~~~~~~~~~~~~-h~~~i----~~l~~sp~g~~l 259 (304)
..+.|+|++++++.... + ..+.++|..+++....+.. ..++| ....|+|||+.+
T Consensus 258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 56789999987776432 2 2477788888765443332 22222 345789998753
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.60 E-value=6.8e-05 Score=61.31 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=136.9
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe
Q psy4754 31 SVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK 109 (304)
Q Consensus 31 ~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~ 109 (304)
+..|.+ ++.++.+=-..++|.-||+.+++... + .....+.++++.++|+++++ +.++ +..+|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~-~~~~~~~~i~~~~dg~l~va-~~~g---l~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIA-SDDG---LFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEE-ETTE---EEEEETTTCCEEEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E-ECCCCcEEEEEecCCCEEEE-EeCc---cEEeecccceeeEEee
Confidence 456776 45566665577899999998875432 2 22456889999998877765 4454 3578887765433222
Q ss_pred cc--ceeeceeeeEEcCCCCEEEEEeC----CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE-EeecCCceEE
Q psy4754 110 KD--SILFGATSVDFSVSGRLLFAGYN----DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRC 182 (304)
Q Consensus 110 ~~--~~~~~~~~~~~s~~~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i 182 (304)
.. ......+.+.+.++|.+.++... .+.-.+|.+..++. ..+.......+.++++|+++.+. +-+..+.|
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~-~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I-- 172 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRL-- 172 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEE--
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE-EEEeeccCCcceeeecCCCceEEEeeccccee--
Confidence 11 11123567788999987665432 12334444333322 22222233467899999998655 44445553
Q ss_pred EEeeecCC------ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEc-cC
Q psy4754 183 RLFDLRAD------KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS-PD 255 (304)
Q Consensus 183 ~~~d~~~~------~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-p~ 255 (304)
+.+++... +.............+..+++.++|++.++....+.|..||. .++.+..+.-....+++++|- ||
T Consensus 173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d 251 (295)
T d2ghsa1 173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD 251 (295)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCC
Confidence 45654321 11111111111224577889999999988888889999995 677888887766789999995 56
Q ss_pred CC-EEEEeec
Q psy4754 256 GT-AFSSGSW 264 (304)
Q Consensus 256 g~-~lasgs~ 264 (304)
.+ +++|.+.
T Consensus 252 ~~~LyvTta~ 261 (295)
T d2ghsa1 252 ASRLLVTSAR 261 (295)
T ss_dssp SCEEEEEEBC
T ss_pred CCEEEEEECC
Confidence 54 5565544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.39 E-value=2.5e-05 Score=62.64 Aligned_cols=237 Identities=7% Similarity=-0.051 Sum_probs=117.2
Q ss_pred EEcCC--CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC----CCceEEEEeeeCCCeeEe
Q psy4754 33 DFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW----DTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 33 ~~~~~--g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~----D~~i~~~~wd~~~~~~~~ 106 (304)
..+|+ |+.+|-. .+|.|.+.|+..++.. .+..+.+.+...+|||||+.|+-.+. +....+++.+...+....
T Consensus 5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEE-ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEE-eCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 34688 8877643 3556888899877644 45556778889999999998874432 222335666666655433
Q ss_pred EEeccce----eeceeeeEEcCCCCEEEEEeCC------CeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 107 CYKKDSI----LFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 107 ~~~~~~~----~~~~~~~~~s~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
....... ........|+|+++.++..... ..+...+....... ..+......+.+.+++..++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV---PLNLGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE---ECCSCSCSEEEEETTEEEEEESCS
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE---EecCCccceeeecCCCeEEEeecc
Confidence 2111110 1123467799999988775321 22333333222211 112222333444444444444332
Q ss_pred CCce---------EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCceeeEEeecccc
Q psy4754 177 DTTL---------RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--YTINVWDSLKCCRVNHLMGHEN 245 (304)
Q Consensus 177 d~~i---------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d--~~i~iwd~~~~~~~~~~~~h~~ 245 (304)
+... ................... .......++++. .+.....+ ..|.++|+.... +..+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~-~~~lt~~~~ 234 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKD-LRKHTSFTD 234 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCS-CEECCCCCS
T ss_pred ccceeeeeccCCcceeeeeccccceeeccCCc---cccceeeeeccc-cceecccccccceEEEeCCCCc-eEEeecCCC
Confidence 2210 0011111111111111111 112233344443 22333333 346667776543 333433322
Q ss_pred ceEEEEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 246 ~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
.....|||||+.|+-. .++.|.+.+++.+..+.+
T Consensus 235 -~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 235 -YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp -SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred -cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 2234689999998764 467788888766554433
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.33 E-value=4.2e-05 Score=63.32 Aligned_cols=157 Identities=12% Similarity=0.113 Sum_probs=98.0
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC--CceEEEEeeecCCceEEE
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD--TTLRCRLFDLRADKEVAC 195 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d--~~i~i~~~d~~~~~~~~~ 195 (304)
..++|.+++++.++-...+.|..|+..+......+.........++++|||+++++...+ ....+...+.........
T Consensus 43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~ 122 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 122 (319)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee
Confidence 357888999876766678999999876654444444455678899999999987765433 222223444444333332
Q ss_pred eecCceeeeeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCceeeEEeeccccceEEEEEccCCCE-EEEeecCCee
Q psy4754 196 YKKDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-FSSGSWDTTL 268 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l~sg~~d------~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~-lasgs~D~~i 268 (304)
.........++.+++.|+|.+.++-... +.+..++... ..+..+...-...+.|+|+||++. +++-+..+.|
T Consensus 123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I 201 (319)
T d2dg1a1 123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTANRL 201 (319)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCCce
Confidence 3222222346788999999988875332 2354455432 233333333345578999999975 5676778888
Q ss_pred eeccccc
Q psy4754 269 RDEESKN 275 (304)
Q Consensus 269 ~~~~~~~ 275 (304)
.-++++.
T Consensus 202 ~~~d~~~ 208 (319)
T d2dg1a1 202 HRIALED 208 (319)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 8877643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.23 E-value=0.00078 Score=54.73 Aligned_cols=203 Identities=12% Similarity=0.095 Sum_probs=122.9
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee--cC--CcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MG--HENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~--~~--h~~~V~~l~~s~ 78 (304)
.++|.-||+.+++.. .+... ..+.++++.++|.++++. .+ .+.++|..+++..... .. ....+..+.+.|
T Consensus 39 ~~~I~r~d~~~g~~~-~~~~~---~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~ 112 (295)
T d2ghsa1 39 ERELHELHLASGRKT-VHALP---FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP 112 (295)
T ss_dssp GTEEEEEETTTTEEE-EEECS---SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT
T ss_pred CCEEEEEECCCCeEE-EEECC---CCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECC
Confidence 456777888887543 23222 347889998998887764 44 5889999887643221 11 123577889999
Q ss_pred CCCeEEEEeCCCce--EEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccc--------
Q psy4754 79 DGTAFSSGSWDTTL--RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCC-------- 147 (304)
Q Consensus 79 d~~~l~sgs~D~~i--~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~-------- 147 (304)
+|++.++....... .-.+|.+..++....... ....+.+.++++++.++.. +..+.|..+++....
T Consensus 113 ~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~---~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~ 189 (295)
T d2ghsa1 113 SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD---ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 189 (295)
T ss_dssp TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE---ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred CCCEEEEeccccccccceeEeeecCCcEEEEeec---cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence 99977765432110 124566555543332221 2234678899999876555 557888888753211
Q ss_pred cceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc-CCCCEEEE
Q psy4754 148 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFA 219 (304)
Q Consensus 148 ~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~s 219 (304)
......+-.+....+++.++|++.++.-..+.| ..||. .++.+..+.... ..+++++|. |+.+.|..
T Consensus 190 ~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V--~~~dp-~G~~~~~i~lP~--~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 190 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV--DRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEE--EEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEE
T ss_pred EEeccCcccccccceEEcCCCCEEeeeeCCCce--EEecC-CCcEeeEecCCC--CceEEEEEeCCCCCEEEE
Confidence 111223344567889999999877765555654 57885 456666654332 246889995 67655443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.12 E-value=0.00081 Score=56.30 Aligned_cols=258 Identities=11% Similarity=0.027 Sum_probs=127.2
Q ss_pred eeEEeeccccceE--eeeeccccccceeEEEEcCCCCEEEEeeCC-CcEEEEeCCCceeee--eecCCcCcEEEEEECCC
Q psy4754 5 HCRLFDLRADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYND-YTINVWDSLKCCRVN--HLMGHENRVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d-g~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~d 79 (304)
.+.+||+.+++-. +..... +.....+.++.++|.+++.|+.+ ..+.+||..+..-.. .+.. ...--+.+..+|
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~-~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~d 130 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTK-HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSD 130 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECS-CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTT
T ss_pred EEEEEECCCCcEeecCCCCCC-cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccc-cccccceeeecC
Confidence 3678999988532 111111 11224566788999999998765 689999987764322 1111 112235677789
Q ss_pred CCeEEEEeCCCc----eEEEEeeeCCCeeEeEEecccee---e---------ceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 80 GTAFSSGSWDTT----LRCRLFDLRADKEVACYKKDSIL---F---------GATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 80 ~~~l~sgs~D~~----i~~~~wd~~~~~~~~~~~~~~~~---~---------~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
|+.++.|+.+.. -.+.+||..+.+-.......... . ....+...++++.+..+...+.+.++|.
T Consensus 131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~ 210 (387)
T d1k3ia3 131 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 210 (387)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCc
Confidence 999888874321 11467887655322110000000 0 0011222345666666666777777776
Q ss_pred Ccccccee--c----cCcccc--eeEEEE-cCCCcEEEEeecCCc------eEEEEeeecCCce-EEEeec-Ccee--ee
Q psy4754 144 LKCCRVNH--L----MGHENR--VSCLQV-SPDGTAFSSGSWDTT------LRCRLFDLRADKE-VACYKK-DSIL--FG 204 (304)
Q Consensus 144 ~~~~~~~~--~----~~h~~~--v~~v~~-sp~~~~las~s~d~~------i~i~~~d~~~~~~-~~~~~~-~~~~--~~ 204 (304)
.+...... . ..+... -.++.+ ..+++.++.|+.... ....+.+...... ...+.. .... -.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 290 (387)
T d1k3ia3 211 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 290 (387)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred ccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccc
Confidence 55332110 0 001111 122222 346777777764321 0011222211100 001111 0000 01
Q ss_pred eeEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCce--eeEEeeccccceEEEEEccCCCEEEEeec
Q psy4754 205 ATSVDFSVSGRLLFAGYND-----------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSW 264 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~d-----------~~i~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~g~~lasgs~ 264 (304)
-.+.+..++|++++.|+.+ .++.+||..+.+ .+..+......-....+.+||+.|+.|+.
T Consensus 291 ~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 291 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1245567899999997743 157889876543 22222111111123446899999999884
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.11 E-value=0.00052 Score=54.49 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=105.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEe-eCCC-----cEEEEeCCCceeeeeec------CCcCcE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDY-----TINVWDSLKCCRVNHLM------GHENRV 71 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg-~~dg-----~v~iwd~~~~~~~~~~~------~h~~~V 71 (304)
+.|-++|+.+++.... ......+...+|||||+.||-. ..++ .|.+.+..+++..+... ......
T Consensus 21 ~dl~~~d~~~g~~~~L---t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~ 97 (281)
T d1k32a2 21 DDLWEHDLKSGSTRKI---VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFT 97 (281)
T ss_dssp TEEEEEETTTCCEEEE---ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECS
T ss_pred CcEEEEECCCCCEEEE---ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccc
Confidence 3455668888765332 2223347889999999988733 2222 36777777765443211 122345
Q ss_pred EEEEECCCCCeEEEEeCCC----ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCC----------
Q psy4754 72 SCLQVSPDGTAFSSGSWDT----TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDY---------- 136 (304)
Q Consensus 72 ~~l~~s~d~~~l~sgs~D~----~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg---------- 136 (304)
...+|+|||+.|+...... .......+........ ... ....-.+.+++..++... ...
T Consensus 98 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (281)
T d1k32a2 98 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNL-----GPATHILFADGRRVIGRNTFELPHWKGYRGGT 171 (281)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCS-----CSCSEEEEETTEEEEEESCSCCTTSTTCCSTT
T ss_pred cccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE-ecC-----CccceeeecCCCeEEEeeccccceeeeeccCC
Confidence 6789999999887653211 1112233433332211 100 011112233333333221 111
Q ss_pred -eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC
Q psy4754 137 -TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 215 (304)
Q Consensus 137 -~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 215 (304)
........ .........+........++++. .+.....++.-.++++|+.+.+......... .....|+|||+
T Consensus 172 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~----~~~~~~SpDG~ 245 (281)
T d1k32a2 172 RGKIWIEVN-SGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTD----YYPRHLNTDGR 245 (281)
T ss_dssp CCEEEEEEE-TTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCS----SCEEEEEESSS
T ss_pred cceeeeecc-ccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCCC----cccccCcCCCC
Confidence 00000000 00111112223334444555553 3333334444456777877655432211111 12345899999
Q ss_pred EEEEEeCCCcEEEEeCCCcee
Q psy4754 216 LLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 216 ~l~sg~~d~~i~iwd~~~~~~ 236 (304)
.|+... ++.+.++|+.+++.
T Consensus 246 ~I~f~~-~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 246 RILFSK-GGSIYIFNPDTEKI 265 (281)
T ss_dssp CEEEEE-TTEEEEECTTTCCE
T ss_pred EEEEEe-CCEEEEEECCCCCE
Confidence 987654 67899999877653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.56 E-value=0.0049 Score=51.91 Aligned_cols=202 Identities=13% Similarity=0.037 Sum_probs=113.1
Q ss_pred EEEECC---CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEE--cCCCCEEEEEeCCC-----------
Q psy4754 73 CLQVSP---DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF--SVSGRLLFAGYNDY----------- 136 (304)
Q Consensus 73 ~l~~s~---d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~sg~~dg----------- 136 (304)
.+++.. ||++|+....... ++-..|+...+.....+.. .....+.+.. .|...+++.++...
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~-RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~ 166 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANT-RVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 166 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTT-EEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred cccccCCccceeEEEEEcCCCc-eEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence 455544 6777776553322 3567888776654433221 1112333333 34556777665532
Q ss_pred -------eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc-------------eEEEEeee---------
Q psy4754 137 -------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT-------------LRCRLFDL--------- 187 (304)
Q Consensus 137 -------~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~-------------i~i~~~d~--------- 187 (304)
.+.++|..+.+...+..- ......+.++|||+++++.+.+.- -.+.+++.
T Consensus 167 d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~ 245 (459)
T d1fwxa2 167 DVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 245 (459)
T ss_dssp CGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred chhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence 356677776654443321 234567899999999887663321 11122222
Q ss_pred --------------cCC---ceEEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCce------------ee
Q psy4754 188 --------------RAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCC------------RV 237 (304)
Q Consensus 188 --------------~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~------------~~ 237 (304)
+.. ..+..+.. ...+..+.++|||+++++++ -+.++.|+|..+-. .+
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred CCcEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 110 00111111 11345788999999988855 57889999975311 11
Q ss_pred EEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 238 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
.+. ...-....-+|...|..+.|---|..|--|++......|.
T Consensus 323 ~e~-elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~ 365 (459)
T d1fwxa2 323 AEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYA 365 (459)
T ss_dssp ECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred eec-ccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhc
Confidence 111 1122346678998888888888899999998866544443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.22 E-value=0.04 Score=45.41 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=70.3
Q ss_pred eEEEEcCCCCEEEEeeCCC-----------cEEEEeCCCceeee--e-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEE
Q psy4754 30 TSVDFSVSGRLLFAGYNDY-----------TINVWDSLKCCRVN--H-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 95 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg-----------~v~iwd~~~~~~~~--~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~ 95 (304)
.......+|++++-|+.+. .+.+||+.+++-.. . ...|.....+.++.+++++++.|+.+..- +.
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~-~~ 101 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK-TS 101 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC-EE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc-ee
Confidence 3444556889888887531 37799998764221 1 12333333456788999999998876432 57
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC------CeEEEecCCcc
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKC 146 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d------g~i~iwd~~~~ 146 (304)
+||..+..-.......... .....+..+|++.++.|+.+ ..+.+||..+.
T Consensus 102 ~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp EEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred EecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 8998765443211111111 12345667788888887642 46889987654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.90 E-value=0.092 Score=44.02 Aligned_cols=233 Identities=14% Similarity=0.074 Sum_probs=133.9
Q ss_pred EEEEcC---CCCEEE-EeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECC--CCCeEEEEeCCCc------------
Q psy4754 31 SVDFSV---SGRLLF-AGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSP--DGTAFSSGSWDTT------------ 91 (304)
Q Consensus 31 ~~~~~~---~g~~l~-tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~--d~~~l~sgs~D~~------------ 91 (304)
.++|.. ||+++. .-..+..|-+-|+.+.+..+.+.. -...+..+...+ +..+++.++.+..
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 466654 788765 445789999999988876553322 223455566654 4457777665331
Q ss_pred ----eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC--------------------------------
Q psy4754 92 ----LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-------------------------------- 135 (304)
Q Consensus 92 ----i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-------------------------------- 135 (304)
-.+..+|..+.+.......... ...++++++|+++++.+.+
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~ 245 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 245 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred hhcceEEEEEecCCceEEEEeeeCCC---hhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence 1123567666665554433221 2367899999998886532
Q ss_pred ------CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceE----------EEe
Q psy4754 136 ------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEV----------ACY 196 (304)
Q Consensus 136 ------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~----------~~~ 196 (304)
+.+.+-|.++.. .+..+.--......+.++|||++++.++. +.++ .++|++..... ..-
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tV--SViD~~Ki~~~~~~~~~~~~~~~~ 323 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTV--TVLDVTRFDAVFYENADPRSAVVA 323 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBE--EEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred CCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcE--EEEEehhhhhhhcccCCccccEEe
Confidence 222333332210 11101111133567899999998776664 6665 57887542111 001
Q ss_pred ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc----------eeeEEeeccccceEEE-----EEccCCCEEEE
Q psy4754 197 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----------CRVNHLMGHENRVSCL-----QVSPDGTAFSS 261 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~----------~~~~~~~~h~~~i~~l-----~~sp~g~~las 261 (304)
+. ....+....+|...|.-..+---|..|--|++... ..+..+.-|.++=.-. ...|||++|++
T Consensus 324 e~-elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~ 402 (459)
T d1fwxa2 324 EP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 402 (459)
T ss_dssp CC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred ec-ccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEE
Confidence 11 11234567789999987777778999999986432 2334444343322111 24689999998
Q ss_pred e---ecCCeee
Q psy4754 262 G---SWDTTLR 269 (304)
Q Consensus 262 g---s~D~~i~ 269 (304)
. |.|+.+-
T Consensus 403 ~nk~skdrfl~ 413 (459)
T d1fwxa2 403 LSKFSKDRFLN 413 (459)
T ss_dssp EESCCTTSSCC
T ss_pred ecccccccccC
Confidence 7 5677653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.1 Score=40.87 Aligned_cols=230 Identities=10% Similarity=0.015 Sum_probs=122.8
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEE-EeeCCCcEEEEeCCCce---eeee-ecCCcCcEEEEEECC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLKCC---RVNH-LMGHENRVSCLQVSP 78 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~-tg~~dg~v~iwd~~~~~---~~~~-~~~h~~~V~~l~~s~ 78 (304)
..||-.++.+.+.....+ ....+.+++|.+.++.|+ +=..++.|.--++.... .... +......+..|++-+
T Consensus 10 ~~I~~~~l~~~~~~~~~~---~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp SSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCCcceeeeC---CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee
Confidence 458888998875443322 122477899998766554 54556667666654211 1111 222234466788865
Q ss_pred CCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCc
Q psy4754 79 DGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 79 d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h 155 (304)
.++ +..+-...+. +.+.++............. .....++++|...+++.... .+.|...++............
T Consensus 87 ~~~~lY~~d~~~~~--I~v~~~~g~~~~~~~~~~~--~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~ 162 (266)
T d1ijqa1 87 IHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (266)
T ss_dssp TTTEEEEEETTTTE--EEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred ccceEEEEecCCCE--EEeEecCCceEEEEEcCCC--CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc
Confidence 444 4444444455 4567776554433333221 22457888887777776543 345666655432222112223
Q ss_pred ccceeEEEEcCCCcEEEEe-ecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 156 ENRVSCLQVSPDGTAFSSG-SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~-s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
-..+.++++.+.++.+.-+ +..+.| ...++.................+.++++. ++.++.+-..++.|.-.+..++
T Consensus 163 ~~~p~gl~iD~~~~~lYw~d~~~~~I--~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 163 IQWPNGITLDLLSGRLYWVDSKLHSI--SSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEE--EEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred cceeeEEEeeccccEEEEecCCcCEE--EEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence 3567899999877665544 444553 56676554333333222222234566665 3455555556677777776666
Q ss_pred eeeEEeecc
Q psy4754 235 CRVNHLMGH 243 (304)
Q Consensus 235 ~~~~~~~~h 243 (304)
.....+...
T Consensus 240 ~~~~~~~~~ 248 (266)
T d1ijqa1 240 SDVNLLAEN 248 (266)
T ss_dssp CCCEEEECS
T ss_pred cceEEEEcC
Confidence 555544443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.12 Score=40.46 Aligned_cols=224 Identities=10% Similarity=0.011 Sum_probs=123.5
Q ss_pred CcCcEEEEEECCCCCeEEE-EeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCC
Q psy4754 67 HENRVSCLQVSPDGTAFSS-GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSL 144 (304)
Q Consensus 67 h~~~V~~l~~s~d~~~l~s-gs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~ 144 (304)
+...+.+|+|.+..+.|.- -..++.| +..++............ ...+..+++..-++.++.+. ..+.|.+.++.
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I--~~~~l~g~~~~~v~~~~--~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSI--GRASLHGGEPTTIIRQD--LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE--EEEESSSCCCEEEECTT--CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeE--EEEEcccCCcEEEEEec--cccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence 3345778888876665554 3445554 44555543333222221 12346788876667776654 46799998876
Q ss_pred ccccceeccCcccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeC
Q psy4754 145 KCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYN 222 (304)
Q Consensus 145 ~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~ 222 (304)
......-.......+..+++.|....+. +-......+|...++.......... .. ...+..+++.+.++.| .+-..
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~-~~~P~glaiD~~~~~lYw~d~~ 187 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DN-LGLPNGLTFDAFSSQLCWVDAG 187 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TT-CSCEEEEEEETTTTEEEEEETT
T ss_pred CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ec-ccccceEEEeecCcEEEEEeCC
Confidence 5432222223335688999998665544 4322222222333444333222222 22 1245789998877765 44445
Q ss_pred CCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc-hhheeeccccCCceeEEEEEec
Q psy4754 223 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY-MQYLLRSRITKPTQGLTVYFQD 299 (304)
Q Consensus 223 d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 299 (304)
.+.|...+.........+.+-. ...+|++. ++..+.|-...+.|.--+...+. .+...+++..+|+ ||.++-+.
T Consensus 188 ~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~-gi~v~~~~ 262 (263)
T d1npea_ 188 THRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLY-GITIALSQ 262 (263)
T ss_dssp TTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCC-CEEEECSC
T ss_pred CCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcc-eEEEeCCC
Confidence 6789888876544333333322 34678886 46667776666777666654333 2344445555555 88776543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.41 E-value=0.14 Score=39.97 Aligned_cols=216 Identities=6% Similarity=-0.016 Sum_probs=120.8
Q ss_pred eeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
+.+++|.+.++.+ .+=..++.|+..++........+..-...+.++++..-+..|. +-...+. +...++.......
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~--I~~~~~dg~~~~~ 115 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR--IEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCE--EEEEecCCceEEE
Confidence 6789998776654 4556678888888765543333333335678888876455554 4444445 4566766443322
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCC-Ce--EEEecCCccccceeccCcccceeEEEEcCCCcEEEEe-ecCCceEE
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYND-YT--INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDTTLRC 182 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~-s~d~~i~i 182 (304)
..... ...+..+++.|...+++..... +. |..-++............-....++++.+.++.+.-+ ...+.|
T Consensus 116 l~~~~--l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I-- 191 (263)
T d1npea_ 116 LFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA-- 191 (263)
T ss_dssp EECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE--
T ss_pred Eeccc--ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE--
Confidence 22221 2245678888888887765432 23 4333443322221122223456899998877666544 344553
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-cccceEEEEEcc
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSP 254 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp 254 (304)
...++............. .+.++++. ++.++.+-...+.|...|..+++.+..+.. .......|++-+
T Consensus 192 ~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 192 ECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 456665544333333222 23466665 455556655678888889888877665532 223444555543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.04 E-value=0.25 Score=39.20 Aligned_cols=253 Identities=8% Similarity=0.043 Sum_probs=143.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 83 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 83 (304)
..|-|-|+...+.... +....-+.-.+|..+.||--+ ..++.++|+++.++++.+.-. .+|.-=.|-.+.. |
T Consensus 45 ~~VvIidl~n~~~~~R-----rpi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~-L 116 (327)
T d1utca2 45 AQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-V 116 (327)
T ss_dssp EEEEEEETTSTTSCEE-----EECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSSE-E
T ss_pred ceEEEEECCCCCccee-----cccchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCCE-E
Confidence 3466777766542111 111234566789989887665 558999999998888876544 4555557765544 3
Q ss_pred EEEeCCCceEEEEeeeCC-CeeEeEEeccceeec--eeeeEEcCCCCEEEEEe-------CCCeEEEecCCccccceecc
Q psy4754 84 SSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFG--ATSVDFSVSGRLLFAGY-------NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~ 153 (304)
+-.. +.. +.=|++.. ..+...+..+..+.+ +.....+++.++++..+ -.|.+.+|..+.. .-+.+.
T Consensus 117 ~lVT-~ta--VYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie 192 (327)
T d1utca2 117 ALVT-DNA--VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 192 (327)
T ss_dssp EEEC-SSE--EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC
T ss_pred EEEc-CCc--eEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc
Confidence 3222 223 35688843 345555555443322 34455677788765531 2367778875542 233456
Q ss_pred CcccceeEEEEcCCC---cEEEEeecCCc-eEEEEeeecCCce-EEEe---------ecCceeeeeeEEEEcCCCCEEEE
Q psy4754 154 GHENRVSCLQVSPDG---TAFSSGSWDTT-LRCRLFDLRADKE-VACY---------KKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~---~~las~s~d~~-i~i~~~d~~~~~~-~~~~---------~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
||-+.-..+.+..+. +.|+.+....+ .++.+.++..... -..+ +.+...--..++-.++.-..+..
T Consensus 193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv 272 (327)
T d1utca2 193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 272 (327)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence 775444333332211 24444433222 3456676644210 0111 11110011346777888778888
Q ss_pred EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
-..-|-|++||+.++..+..-+=-.++|..-+-..+..-+++-..+|.+
T Consensus 273 iTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV 321 (327)
T d1utca2 273 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 321 (327)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred EecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence 8888999999999998876554455666655555555555555565554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.31 Score=37.99 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=118.2
Q ss_pred cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCe---eEeEEeccceeeceeeeEEcC
Q psy4754 49 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADK---EVACYKKDSILFGATSVDFSV 124 (304)
Q Consensus 49 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~---~~~~~~~~~~~~~~~~~~~s~ 124 (304)
.|+..++.+.+... +......+.+++|.+..+.|. +-..++.|. -.++.... .....-.. ....+..+++.+
T Consensus 11 ~I~~~~l~~~~~~~-~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~--~~~l~~~~~~~~~~~~~~~-~~~~p~glAvD~ 86 (266)
T d1ijqa1 11 EVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMIC--STQLDRAHGVSSYDTVISR-DIQAPDGLAVDW 86 (266)
T ss_dssp SEEEEETTSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEE--EEEC--------CEEEECS-SCSCCCEEEEET
T ss_pred eEEEEECCCCccee-eeCCCCceEEEEEEeCCCEEEEEECCCCEEE--EEEecCCCCCcceEEEEeC-CCCCcceEEEee
Confidence 58888887654333 223345677899988766554 433444442 23332111 11111111 112345678877
Q ss_pred CCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCceEEEeecCcee
Q psy4754 125 SGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 125 ~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
.++.++... ..+.|.+.++..................+++.|... .+.+- ....-+|...++.......... ...
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~-~~~~~~I~r~~~dGs~~~~l~~-~~~- 163 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD-WGTPAKIKKGGLNGVDIYSLVT-ENI- 163 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE-CSSSCEEEEEETTSCCEEEEEC-SSC-
T ss_pred ccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEec-cCCCcceeEeccCCCceecccc-ccc-
Confidence 677777764 457899998765443333344456688999988544 44443 2222223345554433322222 221
Q ss_pred eeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCcee--eEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 203 FGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~~~~--~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
..++.+++.+.++.|.- -...+.|...++..... +...........+|++. ++..+.+-..++.|.-.+...+
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence 23578899987765444 45567888888754322 22222223345678887 4566667666777765554443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.50 E-value=0.48 Score=38.41 Aligned_cols=193 Identities=13% Similarity=0.176 Sum_probs=98.1
Q ss_pred EEEEECCCCCeEEEEeC----------CCceEEEEeeeCCCeeEe-EEe--cc---ceeeceeeeEE--cCCCC-EEEEE
Q psy4754 72 SCLQVSPDGTAFSSGSW----------DTTLRCRLFDLRADKEVA-CYK--KD---SILFGATSVDF--SVSGR-LLFAG 132 (304)
Q Consensus 72 ~~l~~s~d~~~l~sgs~----------D~~i~~~~wd~~~~~~~~-~~~--~~---~~~~~~~~~~~--s~~~~-~l~sg 132 (304)
..+...|+|..+++++. |..-++.++|+...+... .+. .. ...+....+.+ ..++. +|+..
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35677788877766542 212234677876533211 111 11 11122233332 44555 34443
Q ss_pred ---eCCCeEEEecCCcccc-c---eecc-CcccceeEEEEcCCCcEEEEee--c-C------------CceEEEEeeecC
Q psy4754 133 ---YNDYTINVWDSLKCCR-V---NHLM-GHENRVSCLQVSPDGTAFSSGS--W-D------------TTLRCRLFDLRA 189 (304)
Q Consensus 133 ---~~dg~i~iwd~~~~~~-~---~~~~-~h~~~v~~v~~sp~~~~las~s--~-d------------~~i~i~~~d~~~ 189 (304)
....+|.++++..... + .++. ......+.|++.+++.+++|-. . + .+..+.-||...
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 2467888887643221 1 1111 1224578888888898888721 1 1 122222333322
Q ss_pred CceEEEeecCceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEE--eeccccceEEEEEccCCCEEEEeecCC
Q psy4754 190 DKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNH--LMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~--~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
.+. ... .....+.++++|++++|..+ ...+.|+.|+......+.. ...-....-.+.+.+++..+..++...
T Consensus 198 ~~~--~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~ 272 (340)
T d1v04a_ 198 VRV--VAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN 272 (340)
T ss_dssp EEE--EEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred eEE--EcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCc
Confidence 111 111 12346899999999877665 4567899988754332221 111234456788877555555555555
Q ss_pred eee
Q psy4754 267 TLR 269 (304)
Q Consensus 267 ~i~ 269 (304)
..+
T Consensus 273 ~~~ 275 (340)
T d1v04a_ 273 GMR 275 (340)
T ss_dssp HHH
T ss_pred ccc
Confidence 544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.74 E-value=0.74 Score=36.45 Aligned_cols=148 Identities=10% Similarity=0.116 Sum_probs=84.4
Q ss_pred CceeEEeecccc-ceEeeeeccccccc--eeEEEEcCCCCEEE-Ee------eCCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLRAD-KEVACYKKDSILFG--ATSVDFSVSGRLLF-AG------YNDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~-~~~~~~~~~~~~~~--i~~~~~~~~g~~l~-tg------~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
...|.=|++++. ++...+.++....+ |-.-..++++++++ +| +-.|.+.+|+.+.+ ..+.++||.+..-
T Consensus 121 ~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~ 199 (327)
T d1utca2 121 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 199 (327)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeE
Confidence 355778888554 34445555433333 55556677788665 33 22478899998764 4556788876555
Q ss_pred EEEECCCC---CeEEEEeCC-CceEEEEeeeCCCee-EeEE---------eccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 73 CLQVSPDG---TAFSSGSWD-TTLRCRLFDLRADKE-VACY---------KKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 73 ~l~~s~d~---~~l~sgs~D-~~i~~~~wd~~~~~~-~~~~---------~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
.+.+.-+. +.++-+... ...|+.+.++..... -..+ ..+....=..++.+++....++.-+.-|.+
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i 279 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 279 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEE
Confidence 55443211 223322221 123556777754211 0111 111000002356677778889999999999
Q ss_pred EEecCCcccccee
Q psy4754 139 NVWDSLKCCRVNH 151 (304)
Q Consensus 139 ~iwd~~~~~~~~~ 151 (304)
.+||+.++.++..
T Consensus 280 ~lyDleTgt~i~~ 292 (327)
T d1utca2 280 HLYDLETGTCIYM 292 (327)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEEcccccEEEE
Confidence 9999999887654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.41 E-value=0.62 Score=38.32 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=87.2
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCC----CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA----DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 146 (304)
..-|++++...+++.|+-++.+....=+++. ......++.......+..++|+.+ .++.. .++.+..++...-
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l 115 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEEL 115 (381)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSST
T ss_pred cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeecc
Confidence 4467888877788888877653222222210 000000111111123567788754 44443 4566777775543
Q ss_pred ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC---ceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
........-..++..+...|. .++....++.+ .++++...+........ .....+.++.|++.|..++++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~--~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 116 SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDL--SALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG 191 (381)
T ss_dssp TCEEEEEECSSCEEEEEECSS--EEEEEETTSEE--EEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred ccccccccccccccceecCCc--eeEEEecCCCE--EEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence 222222223456777777775 45555556664 46666665432211100 001234677788888777776432
Q ss_pred CcEEEE-eCCCceeeEEeeccccceEEEEEccCCCEEEE
Q psy4754 224 YTINVW-DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 224 ~~i~iw-d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las 261 (304)
...+- ++.....+..-......|.+|.|-.+...++.
T Consensus 192 -~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 192 -EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp -EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -ceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence 22221 11111111000012345677887766555553
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.32 E-value=1.5 Score=38.12 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=35.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeEEeecc-ccceEEEEEccCCCEEE
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~la 260 (304)
.+.++++|+.|+.++-+|..+++++-++.-. ...-.-+.|..||+.++
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 4668888999999999999999999776532 22223366777897533
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.85 E-value=3.5 Score=35.57 Aligned_cols=68 Identities=7% Similarity=-0.085 Sum_probs=37.8
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCC---c-CcEEEEEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEE
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGH---E-NRVSCLQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h---~-~~V~~l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~ 108 (304)
..++.++.||.+.--|..+|+..-..... . ..++.--.-.++ .++.+.. ++. ++-+|+.+++.+..+
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~--v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGA--VNAFDLKTGELKWRA 192 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCE--EEEEETTTCCEEEEE
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCc--EEEEECCCCcEEEEE
Confidence 45667788999999999998765433211 1 111111011123 3333332 444 467898888888765
Q ss_pred e
Q psy4754 109 K 109 (304)
Q Consensus 109 ~ 109 (304)
.
T Consensus 193 ~ 193 (571)
T d2ad6a1 193 F 193 (571)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.49 E-value=3.6 Score=35.48 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=35.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEEEEccCCCEEE
Q psy4754 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFS 260 (304)
Q Consensus 212 ~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~la 260 (304)
-.|.++++|+.|+.++.+|..+++++-++.-..+ .-.-+.|.-||++++
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 3678888999999999999999999987654221 111255667887443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=2.2 Score=32.49 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=28.2
Q ss_pred eeEEeeccccc--eEeeeeccccccceeEEEEcCCCCEEEEeeC---------CCcEEEEeCCCc
Q psy4754 5 HCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYN---------DYTINVWDSLKC 58 (304)
Q Consensus 5 ~v~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~---------dg~v~iwd~~~~ 58 (304)
.+.+||+.+++ .++.++.....| .++.+ ++.+++.|+. -..+.+||..+.
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~--~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 80 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGL--AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 80 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSC--EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred eEEEEECCCCeEEECCCCCCcccee--EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccc
Confidence 47899999984 333333322222 22222 5677777763 246778887654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.28 E-value=3.3 Score=34.14 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=60.6
Q ss_pred eeEEEEcCCCCEEE-Ee----eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC-------------
Q psy4754 29 ATSVDFSVSGRLLF-AG----YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT------------- 90 (304)
Q Consensus 29 i~~~~~~~~g~~l~-tg----~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~------------- 90 (304)
+....++|+++++| +- +.-.+++++|+.+++.+.... .......++|++|++.|+-...|.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 55678899999876 32 233579999999998664221 111124688999999776544331
Q ss_pred -ceEEEEeeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEE
Q psy4754 91 -TLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAG 132 (304)
Q Consensus 91 -~i~~~~wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg 132 (304)
--+++.+.+.+... ...+.......-...+..+.++++++..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 12356666655422 2233322111123456678899987653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.13 E-value=3.1 Score=33.54 Aligned_cols=174 Identities=7% Similarity=0.118 Sum_probs=97.2
Q ss_pred CCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEc------CCCcEEEEee--cCCceEEEEeeecC-CceEE
Q psy4754 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS------PDGTAFSSGS--WDTTLRCRLFDLRA-DKEVA 194 (304)
Q Consensus 124 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~s------p~~~~las~s--~d~~i~i~~~d~~~-~~~~~ 194 (304)
|+..+++.....+.+.+||+. ++.+..+. .+.++.|..- .....++.++ .++...+++|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 344566666777789999985 55555443 2456666543 2222355555 23444556776642 22233
Q ss_pred EeecCce-----eeeeeEEEE--cCC-CC-EEEEEeCCCcEEEEeCC---C----ceeeEEeeccccceEEEEEccCCCE
Q psy4754 195 CYKKDSI-----LFGATSVDF--SVS-GR-LLFAGYNDYTINVWDSL---K----CCRVNHLMGHENRVSCLQVSPDGTA 258 (304)
Q Consensus 195 ~~~~~~~-----~~~~~~~~~--s~~-g~-~l~sg~~d~~i~iwd~~---~----~~~~~~~~~h~~~i~~l~~sp~g~~ 258 (304)
.+..... ...+..+++ +|. |. +++....+|.+..|.+. . .+.++++.. ...+-.+++.++...
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGS 193 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCc
Confidence 2221111 012445555 554 54 45666778888888642 2 234555543 357889999998888
Q ss_pred EEEeecCCeeeecccccc--chhheee----ccccCCceeEEEEEecCC
Q psy4754 259 FSSGSWDTTLRDEESKNR--YMQYLLR----SRITKPTQGLTVYFQDRG 301 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~ 301 (304)
|..+-++.-|+.++..+. ....+.. ..+....||+.|+-..++
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~ 242 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADG 242 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGG
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCC
Confidence 888888776654443322 1112111 235556889999876654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=89.64 E-value=4.2 Score=32.71 Aligned_cols=197 Identities=8% Similarity=0.115 Sum_probs=103.7
Q ss_pred CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEE------ECCCCCeEEEEe--CCCceEEEEeeeCCC-eeEeE
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ------VSPDGTAFSSGS--WDTTLRCRLFDLRAD-KEVAC 107 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~------~s~d~~~l~sgs--~D~~i~~~~wd~~~~-~~~~~ 107 (304)
+.++++.....+-+.+||+. |+.+..+.. +.+..+. +..+..-++.++ .++...+++|.+... ..+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 45677777788789999985 777766542 2333332 322223345554 334555677877532 22222
Q ss_pred Eeccc--------eeeceeeeEEcCC-CC-EEEEEeCCCeEEEecCCc---c----ccceeccCcccceeEEEEcCCCcE
Q psy4754 108 YKKDS--------ILFGATSVDFSVS-GR-LLFAGYNDYTINVWDSLK---C----CRVNHLMGHENRVSCLQVSPDGTA 170 (304)
Q Consensus 108 ~~~~~--------~~~~~~~~~~s~~-~~-~l~sg~~dg~i~iwd~~~---~----~~~~~~~~h~~~v~~v~~sp~~~~ 170 (304)
+.... ..++ .|+-.++. +. +++....+|.+..|.+.. . ..++++ .-...+..+.+.++.+.
T Consensus 116 ~~~~~~p~~~~~~~vYG-lc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYG-FSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADDEYGS 193 (353)
T ss_dssp CSCSSSCEECSSSSCCC-EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEETTTTE
T ss_pred ccccccccccccCcceE-EEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeCCCCc
Confidence 22110 1122 12323554 43 456667789998886532 1 223333 23457889999988888
Q ss_pred EEEeecCCceEEEEeeecCC--c--e-EEEeecCceeeeeeEEEE--cCCCC-EEEEEe-CCCcEEEEeCCCc-eeeEEe
Q psy4754 171 FSSGSWDTTLRCRLFDLRAD--K--E-VACYKKDSILFGATSVDF--SVSGR-LLFAGY-NDYTINVWDSLKC-CRVNHL 240 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~--~--~-~~~~~~~~~~~~~~~~~~--s~~g~-~l~sg~-~d~~i~iwd~~~~-~~~~~~ 240 (304)
|..+-.+.- +|.+++... . . +...........+-.++. .++++ ||++.+ .+.+..|||-.+. ..+..+
T Consensus 194 LyisEE~~G--iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 194 LYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EEEEETTTE--EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEecCccc--eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 887765543 455654321 1 1 111112122234455553 33434 555544 5678999997653 344443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.36 E-value=5.1 Score=33.31 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=34.3
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCcccc--ceec------cCcccceeEEEEcCC
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHL------MGHENRVSCLQVSPD 167 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~------~~h~~~v~~v~~sp~ 167 (304)
...++|.|+++.+++--..|.|++++..+... +..+ ..-+.-...|+|+|+
T Consensus 29 P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred ceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 46899999998777654479999998665432 1211 112345788999995
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.98 E-value=5.5 Score=33.13 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=37.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee--eeeec------CCcCcEEEEEECCC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLM------GHENRVSCLQVSPD 79 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~--~~~~~------~h~~~V~~l~~s~d 79 (304)
-.+++|.|+|++|++--.+|+|++++..+++. +..+. .-......++++|+
T Consensus 29 P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred ceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 57899999999998876689999999776643 22221 11356778999985
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.55 E-value=9 Score=32.90 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=35.9
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccc-cceEEEEEccCCCE
Q psy4754 211 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTA 258 (304)
Q Consensus 211 s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~ 258 (304)
+..|.++++|+.|+.++-+|..++++|-++.-.. ..-.-+.|..+|+.
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 4467788899999999999999999998776422 11122677889964
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.42 E-value=9 Score=32.80 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=35.1
Q ss_pred EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 95 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
.-||+.+++.+...+......+ =..+-.+..+++|+.|+.++.+|..+++.+=++
T Consensus 460 ~AiD~~tGk~~W~~~~~~p~~g---g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~ 514 (573)
T d1kb0a2 460 LAWDPVAQKAAWSVEHVSPWNG---GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (573)
T ss_dssp EEEETTTTEEEEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEeCCCCCceEeeecCCCCCCC---ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence 3466666666655443221111 112335778888999999999999999877544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=85.33 E-value=7.5 Score=30.88 Aligned_cols=186 Identities=10% Similarity=0.078 Sum_probs=94.3
Q ss_pred ceeEEEEcCCCCEEEEeeC------------CCcEEEEeCCCceeee-ee--c-CCcC----cEEEEEE--CCCCC-eEE
Q psy4754 28 GATSVDFSVSGRLLFAGYN------------DYTINVWDSLKCCRVN-HL--M-GHEN----RVSCLQV--SPDGT-AFS 84 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~------------dg~v~iwd~~~~~~~~-~~--~-~h~~----~V~~l~~--s~d~~-~l~ 84 (304)
+.-.++..|+|..+++++. .|.+.++|+.+.+... .+ . +..+ .--.+++ .++|+ +|+
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 4455788899876665532 4899999986542211 11 1 1000 0122332 45565 344
Q ss_pred EEeC---CCceEEEEeeeCCC--eeE--eEEeccceeeceeeeEEcCCCCEEEEEe-----------------CCCeEEE
Q psy4754 85 SGSW---DTTLRCRLFDLRAD--KEV--ACYKKDSILFGATSVDFSVSGRLLFAGY-----------------NDYTINV 140 (304)
Q Consensus 85 sgs~---D~~i~~~~wd~~~~--~~~--~~~~~~~~~~~~~~~~~s~~~~~l~sg~-----------------~dg~i~i 140 (304)
.... ..+| -++++... +.. .++... .....+.+.+..++.+.++-. ..+.+..
T Consensus 116 vvnH~~~~~~i--eif~~~~~~~~l~~~~~v~~~-~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~ 192 (340)
T d1v04a_ 116 VVNHPGSSSTV--EVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 192 (340)
T ss_dssp EEECSTTCCEE--EEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred EEeccCCCcee--EEEEEeCCCCeEEEEeecCCc-cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence 4332 3343 45555322 221 122221 223456777778887777621 2344555
Q ss_pred ecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC-CCCEEE
Q psy4754 141 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLF 218 (304)
Q Consensus 141 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~ 218 (304)
||..+.+. ....-...+.++++||++.++.+.. .+. ++.|++.....+...........+-.+.+.+ +|.+.+
T Consensus 193 ~~~~~~~~---~~~~l~~pNGI~~s~d~~~lyVa~t~~~~--i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 193 YSPNDVRV---VAEGFDFANGINISPDGKYVYIAELLAHK--IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 267 (340)
T ss_dssp ECSSCEEE---EEEEESSEEEEEECTTSSEEEEEEGGGTE--EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred EcCCceEE---EcCCCCccceeEECCCCCEEEEEeCCCCe--EEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEE
Confidence 66443222 2222346789999999987765544 444 4678876554332222111222345667765 566665
Q ss_pred EEe
Q psy4754 219 AGY 221 (304)
Q Consensus 219 sg~ 221 (304)
++.
T Consensus 268 a~~ 270 (340)
T d1v04a_ 268 GCH 270 (340)
T ss_dssp EEE
T ss_pred EEC
Confidence 554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.44 E-value=10 Score=30.92 Aligned_cols=222 Identities=13% Similarity=0.030 Sum_probs=107.4
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC----------------CcEEEEeCCCcee--eeeecC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----------------YTINVWDSLKCCR--VNHLMG 66 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d----------------g~v~iwd~~~~~~--~~~~~~ 66 (304)
++|+.|+.+++.+.... . ......++|++|++.|+-...+ ..|..+.+.+... ...+..
T Consensus 152 ~l~v~Dl~tg~~~~~~i-~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e 228 (430)
T d1qfma1 152 TIKFMKVDGAKELPDVL-E--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (430)
T ss_dssp EEEEEETTTTEEEEEEE-E--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred eeEEeccCcceeccccc-c--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccc
Confidence 58999999998764211 1 1113568999999866532221 2577777765422 122222
Q ss_pred C--cCcEEEEEECCCCCeEEEEe---CCCceEEEEeeeCCCee--------EeEEeccceeeceeeeEEcCCCCEEEEEe
Q psy4754 67 H--ENRVSCLQVSPDGTAFSSGS---WDTTLRCRLFDLRADKE--------VACYKKDSILFGATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 67 h--~~~V~~l~~s~d~~~l~sgs---~D~~i~~~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~l~sg~ 133 (304)
. ...+..+..++++++++... .+....+++.|+..... ........ .......+ .+..++.-+
T Consensus 229 ~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~T 304 (430)
T d1qfma1 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE---GEYDYVTN-EGTVFTFKT 304 (430)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS---SCEEEEEE-ETTEEEEEE
T ss_pred ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccc---cceEEEec-CCceeeccc
Confidence 2 33567788899999875332 23343344555443211 00111000 00111112 233333322
Q ss_pred ----CCCeEEEecCCcccc--ceecc-CcccceeEEEEcCCCcE-EEEeecCCceEEEEeeecCCceEEEeecCceeeee
Q psy4754 134 ----NDYTINVWDSLKCCR--VNHLM-GHENRVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 205 (304)
Q Consensus 134 ----~dg~i~iwd~~~~~~--~~~~~-~h~~~v~~v~~sp~~~~-las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~ 205 (304)
.++.+...++..... ...+. .+...+..-.+...+.+ ++.-..++.-+++++++.+++......... ..+
T Consensus 305 n~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv 382 (430)
T d1qfma1 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEV--GSV 382 (430)
T ss_dssp CTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCS--SEE
T ss_pred CcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCC--ceE
Confidence 245666666554322 22333 34444443333333334 445567776667888887766543332221 123
Q ss_pred eEEEEcCCCCEEEEEeCC----CcEEEEeCCCce
Q psy4754 206 TSVDFSVSGRLLFAGYND----YTINVWDSLKCC 235 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d----~~i~iwd~~~~~ 235 (304)
..+...++...+....++ .++.-+|+.+++
T Consensus 383 ~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 383 VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred eeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 333344554433332222 456667776654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.06 E-value=9.1 Score=28.71 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=26.1
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCceeeEEeec-cccceEEEEEccCCCEEEEeecCCe
Q psy4754 213 SGRLLFAGYND-----YTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 213 ~g~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
++..++.|+.+ .....+|..+.+... +.. ...+..+-+...+++.++.|+.+..
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 254 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGITVHQGRIYVLGGYDGH 254 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred eeeEEEecCccccccccceeeeeecceeeec-ccCccCcccceEEEEECCEEEEEecCCCC
Confidence 45555555433 345667765543222 111 1122222222347888888877654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=80.30 E-value=17 Score=31.25 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=40.7
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCC---cC-cEEE-EEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeE
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGH---EN-RVSC-LQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h---~~-~V~~-l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~ 107 (304)
..++.++.|+.+.-.|..+|+..-.+... .. .+++ -.+. +..++.|+. .+. ++-+|..+++.+..
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~--v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGY--LTAYDVKTGEQVWR 197 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCE--EEEEETTTCCEEEE
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--CCeEEEeeccccccccCc--eEEEECCCCcEEEE
Confidence 46788889999999999999876554321 11 1111 1111 334555432 244 46688888888876
Q ss_pred Ee
Q psy4754 108 YK 109 (304)
Q Consensus 108 ~~ 109 (304)
+.
T Consensus 198 ~~ 199 (596)
T d1w6sa_ 198 AY 199 (596)
T ss_dssp EE
T ss_pred ee
Confidence 54
|