Psyllid ID: psy4771
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | 2.2.26 [Sep-21-2011] | |||||||
| Q5ZIF1 | 415 | Adipocyte plasma membrane | yes | N/A | 0.830 | 0.674 | 0.360 | 9e-47 | |
| Q7TP48 | 376 | Adipocyte plasma membrane | yes | N/A | 0.756 | 0.678 | 0.348 | 3e-43 | |
| Q9D7N9 | 415 | Adipocyte plasma membrane | yes | N/A | 0.813 | 0.660 | 0.345 | 3e-43 | |
| B5X3B2 | 416 | Adipocyte plasma membrane | N/A | N/A | 0.747 | 0.605 | 0.335 | 1e-41 | |
| Q803F5 | 415 | Adipocyte plasma membrane | yes | N/A | 0.747 | 0.607 | 0.333 | 3e-41 | |
| Q3T0E5 | 412 | Adipocyte plasma membrane | yes | N/A | 0.771 | 0.631 | 0.338 | 8e-40 | |
| Q9HDC9 | 416 | Adipocyte plasma membrane | yes | N/A | 0.753 | 0.610 | 0.348 | 1e-39 | |
| P68175 | 344 | Strictosidine synthase OS | N/A | N/A | 0.531 | 0.520 | 0.324 | 4e-21 | |
| P68174 | 342 | Strictosidine synthase (F | N/A | N/A | 0.531 | 0.523 | 0.324 | 5e-21 | |
| P18417 | 352 | Strictosidine synthase OS | N/A | N/A | 0.483 | 0.463 | 0.326 | 4e-19 |
| >sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 39/319 (12%)
Query: 4 FRNFFISVVVGIVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIH 63
F S+ V ++ T L+ ID + P L G L N KL AE+L+EN++
Sbjct: 42 FLTLAASLAVPLLGATVL--LDCPIDPQPISLKEPPLLTGVLEPNNKLQKAERLWENQLV 99
Query: 64 GPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGK-DCYGFKYEQQCGRPLGIKFDKN 122
GPE++V L+ G G ILK+ G++ V ++G C + E CGRPLGI+ N
Sbjct: 100 GPESIVNIGDVLFTGTADGKILKIEDGEVQTVARIGHGPCGTPEDEPTCGRPLGIRVGPN 159
Query: 123 GALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISM 182
L VADAY+GLY+VN TG+T+ L+S T I+G K N +TV DG+
Sbjct: 160 NTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRK--------- 210
Query: 183 DTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT---SGSGRLIQYNPKTKKN 239
+Y++DSS+K++ F L + GRL++Y+ TK+
Sbjct: 211 ----------------------IYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEV 248
Query: 240 KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299
KVL+ L F NGV+LS E FV+V ET +R+ RYY+ G +G +++F++ +PGLPDN++
Sbjct: 249 KVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIR 308
Query: 300 RDSKGNFLVSLVCPVEQPS 318
S G + V++ PV +P+
Sbjct: 309 LSSSGGYWVAM--PVVRPN 325
|
Gallus gallus (taxid: 9031) |
| >sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 156/290 (53%), Gaps = 35/290 (12%)
Query: 24 LEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGDLYMGVDGGH 83
LE ID +F P + G L N KL AE+LFEN+++GPE++V L+ G G
Sbjct: 21 LESPIDPQSFSFKEPPFMFGVLQPNTKLRQAERLFENQLNGPESIVNIGDVLFTGTADGR 80
Query: 84 ILKLSGGKLVPVVKLGK-DCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTG 142
++KL G++ + + G C E CGRPLGI+ NG L V DAY GL++VN
Sbjct: 81 VVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKR 140
Query: 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 202
+ L+S +T I+G K N +T+ DG+
Sbjct: 141 SVKLLLSSETPIEGKKMSFVNDLTITRDGRK----------------------------- 171
Query: 203 GMVYWSDSSTKYKSGLFEGLT---SGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES 259
+Y++DSS+K++ + L + GRL++Y+ TK+ KVL+ L F NGV+LS +E
Sbjct: 172 --IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEED 229
Query: 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
FV+VAET +R+ R Y+ G +G +++F++ +PG PDN++ S G + V+
Sbjct: 230 FVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVA 279
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 164/313 (52%), Gaps = 39/313 (12%)
Query: 4 FRNFFISVVVGIVAITFYPG---LEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFEN 60
FR F+ + V + AI LE ID +F P + G L N KL AE+LFEN
Sbjct: 38 FRMTFLMLAVSL-AIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLHPNTKLRQAERLFEN 96
Query: 61 EIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGK-DCYGFKYEQQCGRPLGIKF 119
++ GPE++V L+ G G ++KL G++ + + G C E CGRPLGI+
Sbjct: 97 QLSGPESIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRA 156
Query: 120 DKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQL 179
NG L V DAY GL++VN + L+S +T I+G K N +TV DG+
Sbjct: 157 GPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRK------ 210
Query: 180 ISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT---SGSGRLIQYNPKT 236
+Y++DSS+K++ + L + GRL++Y+ T
Sbjct: 211 -------------------------IYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVT 245
Query: 237 KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPD 296
K+ KVL+ L F NGV+LS +E FV+VAET +R+ R Y+ G +G +++F++ +PG PD
Sbjct: 246 KEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPD 305
Query: 297 NVKRDSKGNFLVS 309
N++ S G + V+
Sbjct: 306 NIRPSSSGGYWVA 318
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation. Mus musculus (taxid: 10090) |
| >sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 155/292 (53%), Gaps = 40/292 (13%)
Query: 24 LEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGDLYMGVDGGH 83
+ PE+ ++ P + G N KL A++LFE+++ GPE++ +Y G G
Sbjct: 64 IHPEL----LSLSEPPLMSGCYEPNFKLREAQRLFEDQLVGPESIANFGDLIYTGTADGK 119
Query: 84 ILKLSGGKLVPVVKLGKD-CYGFK-YEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTT 141
I+K+ G + + +LGK C G + E CGRPLGI+ NG L VADAY GL+KVN T
Sbjct: 120 IVKIEGKSITVIARLGKPPCDGSREQEPSCGRPLGIRVGPNGTLFVADAYLGLFKVNPVT 179
Query: 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS 201
G+ L+S + G + N + V DG+
Sbjct: 180 GEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRK---------------------------- 211
Query: 202 DGMVYWSDSSTKYKSGLFEGL---TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADE 258
VY++DSS++++ + L + GR+++Y+ +TK+ VL+ NL FANG++L DE
Sbjct: 212 ---VYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDE 268
Query: 259 SFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310
V+VAET +R+ R ++ G +G + F+D LPG PDN++R S G + V++
Sbjct: 269 ESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAM 320
|
Salmo salar (taxid: 8030) |
| >sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 153/291 (52%), Gaps = 39/291 (13%)
Query: 24 LEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGDLYMGVDGGH 83
++PE+ F + P + G N KL AE+LFE + GPE++ Y G G
Sbjct: 64 IQPEV----FSLNEPPLMTGCYEPNLKLRQAERLFEERLVGPESLANIGDVFYTGTADGK 119
Query: 84 ILKLSGGKLVPVVKLGKD-CYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTG 142
I+K+ G + + +GK C ++E CGRPLGI+ NG L VADAY GL++VN TG
Sbjct: 120 IVKIEGRNIHVLATIGKPPCGSREHEHTCGRPLGIRVGPNGTLFVADAYLGLFEVNPVTG 179
Query: 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 202
+ + L+S + I G + N + V DG+
Sbjct: 180 EVKSLVSTEKRIAGRRLGFVNDLDVTQDGKK----------------------------- 210
Query: 203 GMVYWSDSSTKYKSGLFEGL---TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES 259
VY++DSS++++ F L + GR+++Y+ +TK+ V++ NL F NG++L DE
Sbjct: 211 --VYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEE 268
Query: 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310
V+VAET +R+ R ++ G +G + FI+ LPG PDN++R S G + V++
Sbjct: 269 SVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAM 319
|
Danio rerio (taxid: 7955) |
| >sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 153/301 (50%), Gaps = 41/301 (13%)
Query: 24 LEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGDLYMGVDGGH 83
L+ ID P G L N KL AE+LFEN++ GPE++ ++ G G
Sbjct: 60 LDSPIDPEPLSFKEPPLFLGVLQPNTKLQQAERLFENQLVGPESIANIGDVMFTGTADGR 119
Query: 84 ILKLSGGKLVPVVKLGK-DCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTG 142
++KL G++ + + G C E CGRPLGI+ NG L V DAY GL++VN
Sbjct: 120 VVKLENGEVETIARFGSGPCKTRDDEPACGRPLGIRAGPNGTLFVVDAYKGLFEVN---- 175
Query: 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 202
+ + L+S +T I+G K N +TV D
Sbjct: 176 ----------------------------PWKREVKLLLSSETPIEGRKMSFLNDLTVTRD 207
Query: 203 GM-VYWSDSSTKYKSG-----LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA 256
G +Y++DSS+K++ L EG + GRL++Y+ +TK+ KVL+ +L F NGV+LS
Sbjct: 208 GRKIYFTDSSSKWQRRDYLLLLMEG--TDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSP 265
Query: 257 DESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCPVEQ 316
E FV+V E R+ R+Y+ G +G ++VF++ LPG PDN++ S G + VS+
Sbjct: 266 AEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRAN 325
Query: 317 P 317
P
Sbjct: 326 P 326
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Bos taurus (taxid: 9913) |
| >sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 154/293 (52%), Gaps = 39/293 (13%)
Query: 24 LEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGD-LYMGVDGG 82
LE ID P L G L N KL AE+LFEN++ GPE++ H GD ++ G G
Sbjct: 61 LESPIDPQPLSFKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIA-HIGDVMFTGTADG 119
Query: 83 HILKLSGGKLVPVVKLGK-DCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTT 141
++KL G++ + + G C E CGRPLGI+ NG L VADAY GL++VN
Sbjct: 120 RVVKLENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVN--- 176
Query: 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS 201
+ + L+S +T I+G N +TV
Sbjct: 177 -----------------------------PWKREVKLLLSSETPIEGKNMSFVNDLTVTQ 207
Query: 202 DGM-VYWSDSSTKYKSGLFEGLT---SGSGRLIQYNPKTKKNKVLIANLHFANGVELSAD 257
DG +Y++DSS+K++ + L + GRL++Y+ T++ KVL+ L F NGV+LS
Sbjct: 208 DGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPA 267
Query: 258 ESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310
E FV+VAET +R+ R Y+ G +G +++F++ +PG PDN++ S G + V +
Sbjct: 268 EDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGM 320
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Homo sapiens (taxid: 9606) |
| >sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 49/228 (21%)
Query: 111 CGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
CGR I ++ +N L++ D Y+ L V G QL T +DG + +VTVD
Sbjct: 101 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA---TSVDGVPFKWLYAVTVDQ 157
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS--- 226
G+VY++D ST Y + + S
Sbjct: 158 -------------------------------RTGIVYFTDVSTLYDDRGVQQIMDTSDKT 186
Query: 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286
GRLI+Y+P TK+ +L+ LH G E+SAD SFV+VAE +S ++ +Y+L+GPK+G +EV
Sbjct: 187 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 246
Query: 287 FIDGLPGLPDNVKRDSKGNFLVSLVCPVEQPSEQAGNIR---DPAGAQ 331
+ +P P N+KR++ G+F VS E GN+ DP G +
Sbjct: 247 LVK-IPN-PGNIKRNADGHFWVS------SSEELDGNMHGRVDPKGIK 286
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Rauvolfia serpentina (taxid: 4060) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 49/228 (21%)
Query: 111 CGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
CGR I ++ +N L++ D Y+ L V G QL T +DG + +VTVD
Sbjct: 99 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA---TSVDGVPFKWLYAVTVDQ 155
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS--- 226
G+VY++D ST Y + + S
Sbjct: 156 -------------------------------RTGIVYFTDVSTLYDDRGVQQIMDTSDKT 184
Query: 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286
GRLI+Y+P TK+ +L+ LH G E+SAD SFV+VAE +S ++ +Y+L+GPK+G +EV
Sbjct: 185 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 244
Query: 287 FIDGLPGLPDNVKRDSKGNFLVSLVCPVEQPSEQAGNIR---DPAGAQ 331
+ +P P N+KR++ G+F VS E GN+ DP G +
Sbjct: 245 LVK-IPN-PGNIKRNADGHFWVS------SSEELDGNMHGRVDPKGIK 284
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Rauvolfia mannii (taxid: 4062) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 42/205 (20%)
Query: 111 CGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
CGR I +D KN +++ D ++ L V G QL T + G + +VTVD
Sbjct: 105 CGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLA---TSVQGVPFKWLYAVTVDQ 161
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK---SGLFEGLTSG- 225
G+VY++D S+ + G+ E + +
Sbjct: 162 -------------------------------RTGIVYFTDVSSIHDDSPEGVEEIMNTSD 190
Query: 226 -SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS 284
+GRL++Y+P TK+ +L+ LH G E+SAD SFV+VAE +S+R+ +Y+L+GPK+G +
Sbjct: 191 RTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSA 250
Query: 285 EVFIDGLPGLPDNVKRDSKGNFLVS 309
E F+ +P P N+KR+S G+F VS
Sbjct: 251 E-FLVTIPN-PGNIKRNSDGHFWVS 273
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Catharanthus roseus (taxid: 4058) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| 270011245 | 486 | hypothetical protein TcasGA2_TC030782, p | 0.875 | 0.606 | 0.466 | 4e-79 | |
| 91087333 | 503 | PREDICTED: similar to hemomucin [Triboli | 0.875 | 0.586 | 0.466 | 5e-79 | |
| 156551049 | 544 | PREDICTED: adipocyte plasma membrane-ass | 0.830 | 0.514 | 0.473 | 1e-77 | |
| 328714072 | 412 | PREDICTED: LOW QUALITY PROTEIN: adipocyt | 0.753 | 0.616 | 0.484 | 7e-74 | |
| 332027099 | 578 | Adipocyte plasma membrane-associated pro | 0.804 | 0.468 | 0.426 | 8e-70 | |
| 215541377 | 423 | putative hemomucin [Schistocerca gregari | 0.804 | 0.640 | 0.447 | 1e-68 | |
| 307210789 | 587 | Adipocyte plasma membrane-associated pro | 0.824 | 0.473 | 0.407 | 5e-66 | |
| 307176769 | 568 | Adipocyte plasma membrane-associated pro | 0.839 | 0.498 | 0.409 | 1e-65 | |
| 383859542 | 572 | PREDICTED: adipocyte plasma membrane-ass | 0.810 | 0.477 | 0.423 | 6e-65 | |
| 380024889 | 592 | PREDICTED: adipocyte plasma membrane-ass | 0.795 | 0.452 | 0.385 | 2e-58 |
| >gi|270011245|gb|EFA07693.1| hypothetical protein TcasGA2_TC030782, partial [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 209/330 (63%), Gaps = 35/330 (10%)
Query: 1 MAFFRNFFISVVVGIVAITFYPGLEPEIDFTA-FEVAPPRPLEGKLALNEKLNNAEKLFE 59
+ FF +++ + + F P + PE F ++VAPPRP EG L LNEKLN+AE +
Sbjct: 7 VKFFTRRTFELLIIALLLVFLPKIPPEAKFEKPYKVAPPRPFEGALKLNEKLNDAEIWHK 66
Query: 60 NEIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKF 119
++HGPEA V + G+LY + GG ++KL+G + PVVK GK C G E+ CGRPLG+ F
Sbjct: 67 GDLHGPEAFVDYNGELYTSLHGGDVVKLTGNHITPVVKFGKPCKGIYEERICGRPLGMAF 126
Query: 120 DKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQL 179
DKNG L VAD+Y+G++KV+V TG+ E+L++ D +IDG +PNSV V S+G
Sbjct: 127 DKNGVLFVADSYYGVFKVDVKTGKKERLVAFDEQIDGRNVTLPNSVAVASNGD------- 179
Query: 180 ISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTK 237
++W+DSST++ + G+F+ L GSGRLI Y+ KTK
Sbjct: 180 -------------------------IFWTDSSTEFDLQDGVFDLLADGSGRLIHYDSKTK 214
Query: 238 KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297
KNKVLI++LHFANGV LS DE FV+V ET+ SR+HRYYLKGPK+G ++FI+GLPGL DN
Sbjct: 215 KNKVLISDLHFANGVVLSDDEEFVLVGETVRSRIHRYYLKGPKKGTHDIFIEGLPGLVDN 274
Query: 298 VKRDSKGNFLVSLVCPVEQPSEQAGNIRDP 327
+K D KG F+V LV V+ I P
Sbjct: 275 LKHDGKGGFIVPLVVAVDNEHPLLTQIMGP 304
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91087333|ref|XP_975599.1| PREDICTED: similar to hemomucin [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 209/330 (63%), Gaps = 35/330 (10%)
Query: 1 MAFFRNFFISVVVGIVAITFYPGLEPEIDFTA-FEVAPPRPLEGKLALNEKLNNAEKLFE 59
+ FF +++ + + F P + PE F ++VAPPRP EG L LNEKLN+AE +
Sbjct: 7 VKFFTRRTFELLIIALLLVFLPKIPPEAKFEKPYKVAPPRPFEGALKLNEKLNDAEIWHK 66
Query: 60 NEIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKF 119
++HGPEA V + G+LY + GG ++KL+G + PVVK GK C G E+ CGRPLG+ F
Sbjct: 67 GDLHGPEAFVDYNGELYTSLHGGDVVKLTGNHITPVVKFGKPCKGIYEERICGRPLGMAF 126
Query: 120 DKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQL 179
DKNG L VAD+Y+G++KV+V TG+ E+L++ D +IDG +PNSV V S+G
Sbjct: 127 DKNGVLFVADSYYGVFKVDVKTGKKERLVAFDEQIDGRNVTLPNSVAVASNGD------- 179
Query: 180 ISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTK 237
++W+DSST++ + G+F+ L GSGRLI Y+ KTK
Sbjct: 180 -------------------------IFWTDSSTEFDLQDGVFDLLADGSGRLIHYDSKTK 214
Query: 238 KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297
KNKVLI++LHFANGV LS DE FV+V ET+ SR+HRYYLKGPK+G ++FI+GLPGL DN
Sbjct: 215 KNKVLISDLHFANGVVLSDDEEFVLVGETVRSRIHRYYLKGPKKGTHDIFIEGLPGLVDN 274
Query: 298 VKRDSKGNFLVSLVCPVEQPSEQAGNIRDP 327
+K D KG F+V LV V+ I P
Sbjct: 275 LKHDGKGGFIVPLVVAVDNEHPLLTQIMGP 304
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156551049|ref|XP_001605615.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/317 (47%), Positives = 208/317 (65%), Gaps = 37/317 (11%)
Query: 1 MAFFRNFFISVV-VG--IVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKL 57
M + ++ SV+ +G + AITF PG+ P+ F + V P+ L GKLA+N++LNNAE L
Sbjct: 1 MGYLKSVGTSVIYIGAFLAAITFIPGIPPDAKFEEYSVVAPKELTGKLAVNDRLNNAELL 60
Query: 58 FENEIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGI 117
FE ++ G EA + G+LY GV GG+++K++ KL+PVVK G+DC G E +CGRPLG+
Sbjct: 61 FEGQVKGAEAFASYNGELYTGVHGGYVVKVTKNKLIPVVKFGEDCDGLWQESKCGRPLGL 120
Query: 118 KFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTE 177
KFDK G L V DAY+G++KVNV TG+ E+L+S + IDG P I NS+ + S+G
Sbjct: 121 KFDKKGVLFVNDAYYGIFKVNVKTGKYEKLVSKEEPIDGKVPMIVNSLDIASNGD----- 175
Query: 178 QLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPK 235
+YWSDSST++ + G + L++ SGRLI+YN
Sbjct: 176 ---------------------------IYWSDSSTEFSLEDGSYTTLSNPSGRLIRYNAA 208
Query: 236 TKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295
TKKN+VL+ +L FANGV LS DE FVIV ET++SR+ +Y+LKGPK GK E+F++GLPG+P
Sbjct: 209 TKKNQVLLQDLAFANGVALSEDEDFVIVLETIASRITKYHLKGPKAGKHEIFVEGLPGMP 268
Query: 296 DNVKRDSKGNFLVSLVC 312
DNV D++ FLVSLV
Sbjct: 269 DNVHSDNRNGFLVSLVV 285
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328714072|ref|XP_001947674.2| PREDICTED: LOW QUALITY PROTEIN: adipocyte plasma membrane-associated protein-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/291 (48%), Positives = 187/291 (64%), Gaps = 37/291 (12%)
Query: 28 IDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGDLYMGVDGGHILKL 87
+ FT + V P RPL G LA+NEKL+ KLFE++I GPE ++ H LY + GH++K+
Sbjct: 34 VTFTEYSVTPQRPLTGALAINEKLSGISKLFEDQIVGPEGLLYHNNTLYTTLHYGHVVKI 93
Query: 88 SGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVT---TGQT 144
K+VPV K GK C G E CGRPLG+ DK G L+VADAY+G++KVN+ G+
Sbjct: 94 VDNKIVPVXKFGKVCDGLYDEHICGRPLGLSMDKTGFLYVADAYYGIFKVNLNPDQYGKK 153
Query: 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM 204
EQL+S+D IDG P++PNSV + SDG
Sbjct: 154 EQLVSLDDVIDGVHPKLPNSVAIASDGT-------------------------------- 181
Query: 205 VYWSDSSTKYK--SGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVI 262
+YW+DS T YK GL+ G+GRL++Y+PKTK+N VL+ N+ FANGVELS DESF++
Sbjct: 182 LYWTDSDTNYKLHDGLYTLFVDGTGRLLKYDPKTKRNTVLMNNIQFANGVELSDDESFLL 241
Query: 263 VAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313
V+ET RV +YYLKGPK GKSE+FIDGLPG+PDN+KR+ +G+F + LV P
Sbjct: 242 VSETSKYRVQKYYLKGPKTGKSEIFIDGLPGMPDNIKRNGRGSFYIPLVIP 292
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027099|gb|EGI67195.1| Adipocyte plasma membrane-associated protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 194/307 (63%), Gaps = 36/307 (11%)
Query: 7 FFISVVVGIVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPE 66
+I +++ + ITF PGL PE +F + + PPR L+ KL +LN +KLF NEIH PE
Sbjct: 12 IYIGLILAV--ITFMPGLPPETEFVEYSINPPRQLDPKLGPKNRLNGIQKLFINEIHAPE 69
Query: 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALH 126
++ + G +Y GV GG++L++ ++VP+VK G+ C G E +CGRPLG+KFDK G L+
Sbjct: 70 SLDSYNGQIYTGVHGGYVLRIEEDRVVPIVKFGEKCDGIWQEHKCGRPLGLKFDKKGNLY 129
Query: 127 VADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEI 186
VADAY+G+++VNV TG+ + ++++ IDG P++PNS+ + +G
Sbjct: 130 VADAYYGIFQVNVATGEYKNIVNITKPIDGKIPRMPNSIDIAKNGD-------------- 175
Query: 187 DGAKPQIPNSVTVDSDGMVYWSDSSTKYK--SGLFEGLTSGSGRLIQYNPKTKKNKVLIA 244
+YWSDS++ + + L + SGRLI+YN K+N+VLI
Sbjct: 176 ------------------IYWSDSNSHFAICDLVMTFLINPSGRLIRYNAAKKENEVLIR 217
Query: 245 NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKG 304
N+ FANGV L+ DESFV+V ET+ +R+ +Y LKGPK G+ E+FID LPG+PDN+ DS G
Sbjct: 218 NIAFANGVILNDDESFVLVVETLKNRIMKYNLKGPKAGQHEIFIDRLPGIPDNIHSDSHG 277
Query: 305 NFLVSLV 311
FL+SL+
Sbjct: 278 GFLLSLI 284
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|215541377|emb|CAT00690.1| putative hemomucin [Schistocerca gregaria] | Back alignment and taxonomy information |
|---|
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 188/306 (61%), Gaps = 35/306 (11%)
Query: 13 VGIVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHK 72
+ + IT P L P ++FTA+ V P P EG L LN++LNNAE LF + + GPEA H
Sbjct: 16 ICFILITLLP-LPPYMEFTAYSVPPYMPFEGPLQLNDRLNNAEHLFVDLLKGPEAFAVHN 74
Query: 73 GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF 132
G++Y G+ GG ++K+ LV V K GK C G+ E CGRPLG+KFDK+G L+VAD Y+
Sbjct: 75 GEIYTGIHGGEVVKIVNNSLVHVAKFGKPCGGYWEESICGRPLGLKFDKHGNLYVADTYY 134
Query: 133 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192
GL+KVNV TG +L+S D I+G KP + NSV V DG
Sbjct: 135 GLFKVNVETGLVTKLVSADIPINGKKPLLINSVDVARDGT-------------------- 174
Query: 193 IPNSVTVDSDGMVYWSDSST--KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN 250
VYWS SS+ + G++ L GSGRL++Y+P T ++VL+ LHFAN
Sbjct: 175 ------------VYWSHSSSDVTLQDGVYTLLGDGSGRLLKYSPTTNTSEVLLEKLHFAN 222
Query: 251 GVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310
GV LS DE FV+V+ET+SS++ RYYLKG K+G +++F+D LPG PDN+ D G++ V+L
Sbjct: 223 GVLLSDDEDFVLVSETLSSQIRRYYLKGAKKGSNDIFVDKLPGFPDNLSHDGNGSYFVAL 282
Query: 311 VCPVEQ 316
P ++
Sbjct: 283 AFPADK 288
|
Source: Schistocerca gregaria Species: Schistocerca gregaria Genus: Schistocerca Family: Acrididae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307210789|gb|EFN87172.1| Adipocyte plasma membrane-associated protein [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 196/319 (61%), Gaps = 41/319 (12%)
Query: 1 MAFFRN---FFISVVVGIVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKL 57
M++ ++ F I V V + ITF PGL P ++F + + P ++ K+ +L A+++
Sbjct: 1 MSYLKSIGTFVIYVGVFLALITFLPGLPPHVEFDEYSIVLPHVVDAKVGPKIRLRGAQRI 60
Query: 58 FENEIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGI 117
+ E+ GPE+ + G+LY GV GG+I++L ++VP+VK GK C G E CGRPLG
Sbjct: 61 YVGEVVGPESFDSYNGELYSGVYGGYIIRLEENRVVPIVKFGKKCDGIWQEHICGRPLGF 120
Query: 118 KFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTE 177
KFDK G L+V D Y+GL+KV+++T + + L+++ I
Sbjct: 121 KFDKKGNLYVMDCYYGLFKVDISTKEYKNLVNITKSI----------------------- 157
Query: 178 QLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG----LTSGSGRLIQYN 233
DG KP +PNS+ V +G +YW+DS+T + L+EG L + SGRL++YN
Sbjct: 158 ---------DGKKPMLPNSIDVAENGDLYWTDSNTDFP--LYEGFHISLANPSGRLLRYN 206
Query: 234 PKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293
KKN+VL+ +L FANGV+LS DESFVI+AET+ SR+ +Y+LKGPK G+ E+F++GLPG
Sbjct: 207 AANKKNEVLLRDLGFANGVKLSDDESFVIIAETLKSRIMKYHLKGPKSGQFEIFVEGLPG 266
Query: 294 LPDNVKRDSKGNFLVSLVC 312
LPDN+ D G FL++ +
Sbjct: 267 LPDNIHSDGHGGFLITTII 285
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307176769|gb|EFN66169.1| Adipocyte plasma membrane-associated protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 197/320 (61%), Gaps = 37/320 (11%)
Query: 1 MAFFRNFFISVV-VG--IVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKL 57
M++ ++ +++ +G + ITF PGL P+ +F + + PR ++ KL +LNNAEKL
Sbjct: 1 MSYLKSIGTTIIYIGFFLALITFIPGLPPDTEFREYSIVQPRDIDPKLGPKNRLNNAEKL 60
Query: 58 FENEIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGI 117
FE + GPE+ + G +Y V G++L++ LVP+ K GK C G +Q+CGR LG+
Sbjct: 61 FEGRLLGPESYATYDGQIYTAVYDGYLLRIDEDDLVPIAKFGKKCDGQWQQQKCGRILGL 120
Query: 118 KFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTE 177
KFDK G L+ D+Y+G++KVNV TG + ++++ IDG P +PNS+ + +G
Sbjct: 121 KFDKKGNLYAVDSYYGIFKVNVATGDYKNIVNISKPIDGKIPLLPNSIDIAENGD----- 175
Query: 178 QLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK-SGLFEGLTSG-SGRLIQYNPK 235
+YWSDS+T + L + L+S SGRLI+YN
Sbjct: 176 ---------------------------LYWSDSNTDFPLYDLMQVLSSNPSGRLIRYNAA 208
Query: 236 TKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295
KKN+VL+ NL FANGV LS DESFV+V E+++ R+ +Y+LKGPK G+ E+FI+GLPGLP
Sbjct: 209 KKKNEVLLKNLAFANGVILSDDESFVLVTESVACRIVKYHLKGPKAGQHEIFIEGLPGLP 268
Query: 296 DNVKRDSKGNFLVSLVCPVE 315
DN++ D +G FLVSL+ ++
Sbjct: 269 DNLQSDGQGGFLVSLIIVID 288
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383859542|ref|XP_003705253.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 184/307 (59%), Gaps = 34/307 (11%)
Query: 8 FISVVVGIVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEA 67
I + + + ITF PGL PE +++ + + P ++ L L +L AE LF EI GPE+
Sbjct: 11 IIYIGLFLAVITFLPGLPPEAEYSEYSIKLPSDVQNHLELKNRLEGAEVLFSGEIKGPES 70
Query: 68 VVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHV 127
+ G+LY GV GG+++K+ ++ P+VK G+ C G E++CGRPLG+KF+ G L V
Sbjct: 71 FASYNGELYTGVLGGYVVKVEENRVEPIVKFGQKCDGLWQEEKCGRPLGLKFNDKGELFV 130
Query: 128 ADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187
ADAY+G++KVNV T Q +++ IDG P+I NS+ + +G
Sbjct: 131 ADAYYGIFKVNVKTRQYANIVNSSLPIDGKAPRIVNSLDIAKNGD--------------- 175
Query: 188 GAKPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN 245
+YW+DSST + + GL+ L + SGR I+YN TKKN+VLI N
Sbjct: 176 -----------------IYWTDSSTDFGIQDGLYTFLANPSGRFIRYNAATKKNEVLIKN 218
Query: 246 LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305
L FANGV LS DESFV+V E + SR+ +Y LKGPK G+ E+ ++ LPGLPDNV D +G
Sbjct: 219 LGFANGVVLSDDESFVLVLECLHSRIIKYNLKGPKAGQHEILVETLPGLPDNVHSDGQGG 278
Query: 306 FLVSLVC 312
FLVSL+
Sbjct: 279 FLVSLII 285
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380024889|ref|XP_003696221.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 182/311 (58%), Gaps = 43/311 (13%)
Query: 7 FFISVVVGIVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPE 66
FF++V ITF PG+ PE++ + + + P + +L E LF E++GPE
Sbjct: 16 FFLTV------ITFLPGIPPEVEVSEYSIKYPNT---QTEFKSRLEEIEILFSGEVNGPE 66
Query: 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALH 126
G +Y G+ GG+++++ + P+VK G+ C G E++CGRPLG+KF+ G L
Sbjct: 67 DFASFNGKIYTGIYGGYVVQIEENLIKPLVKFGQKCDGLWQEEKCGRPLGLKFNDKGELF 126
Query: 127 VADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEI 186
V DAY+G++KVN+ T + +++ IDG P+I NS+ + +G
Sbjct: 127 VNDAYYGIFKVNINTREYINIVNSSEPIDGKIPKIVNSLDIAKNGD-------------- 172
Query: 187 DGAKPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTKKNKVLIA 244
+YW+DSST + G++ L + SGRLI+YN TKKN+VL+
Sbjct: 173 ------------------IYWTDSSTDFYLYDGMYSILANPSGRLIRYNAATKKNEVLLK 214
Query: 245 NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKG 304
NL FANG+ LS DESFVIV+E++SSR+ +Y LKG K G+ E+F +GLPG+PDN+ D +G
Sbjct: 215 NLGFANGILLSDDESFVIVSESISSRIIKYNLKGSKAGQQEIFAEGLPGVPDNINSDEQG 274
Query: 305 NFLVSLVCPVE 315
FLVSL+ ++
Sbjct: 275 GFLVSLIILID 285
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| FB|FBgn0041780 | 411 | Ssl2 "Strictosidine synthase-l | 0.353 | 0.289 | 0.408 | 2.5e-42 | |
| UNIPROTKB|Q5ZIF1 | 415 | APMAP "Adipocyte plasma membra | 0.427 | 0.346 | 0.42 | 1.5e-26 | |
| UNIPROTKB|G1K318 | 414 | C3H20orf3 "Uncharacterized pro | 0.427 | 0.347 | 0.402 | 1.1e-25 | |
| FB|FBgn0015737 | 582 | Hmu "Hemomucin" [Drosophila me | 0.525 | 0.304 | 0.349 | 3.6e-25 | |
| UNIPROTKB|Q3T0E5 | 412 | APMAP "Adipocyte plasma membra | 0.397 | 0.325 | 0.401 | 8.2e-24 | |
| UNIPROTKB|E2RPE9 | 415 | APMAP "Uncharacterized protein | 0.397 | 0.322 | 0.380 | 8.8e-24 | |
| UNIPROTKB|F1LLW3 | 386 | RGD1308874 "Protein RGD1308874 | 0.495 | 0.432 | 0.379 | 1.4e-23 | |
| TAIR|locus:2097488 | 403 | LAP3 "LESS ADHERENT POLLEN 3" | 0.400 | 0.334 | 0.357 | 1.6e-23 | |
| RGD|1308874 | 376 | Apmap "adipocyte plasma membra | 0.403 | 0.361 | 0.381 | 2.3e-23 | |
| MGI|MGI:1919131 | 415 | Apmap "adipocyte plasma membra | 0.409 | 0.332 | 0.387 | 3.5e-23 |
| FB|FBgn0041780 Ssl2 "Strictosidine synthase-like 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 249 (92.7 bits), Expect = 2.5e-42, Sum P(2) = 2.5e-42
Identities = 51/125 (40%), Positives = 80/125 (64%)
Query: 195 NSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVEL 254
NS+ + G ++W+DS ++ +F + SGR Y+ K N+VL+ L FANG+ L
Sbjct: 174 NSLVISRQGDIFWTDSFSE--DFVFAAFANPSGR---YDRVKKTNEVLLDELSFANGLAL 228
Query: 255 SADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFL-VSLVCP 313
S E F+I+AET + R+ RYYLKG + G+SEVF++GLPG PDN+ D +G ++ +S+
Sbjct: 229 SPSEDFIILAETTAMRLRRYYLKGSRAGESEVFVEGLPGCPDNLTADEEGIWVPLSVASD 288
Query: 314 VEQPS 318
+ P+
Sbjct: 289 SQNPN 293
|
|
| UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 63/150 (42%), Positives = 99/150 (66%)
Query: 173 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLT-SGS--GR 228
TG+T+ L+S T I+G K N +TV DG +Y++DSS+K++ F L G+ GR
Sbjct: 178 TGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGR 237
Query: 229 LIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288
L++Y+ TK+ KVL+ L F NGV+LS E FV+V ET +R+ RYY+ G +G +++F+
Sbjct: 238 LLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFV 297
Query: 289 DGLPGLPDNVKRDSKGNFLVSLVCPVEQPS 318
+ +PGLPDN++ S G + V++ PV +P+
Sbjct: 298 ENMPGLPDNIRLSSSGGYWVAM--PVVRPN 325
|
|
| UNIPROTKB|G1K318 C3H20orf3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 60/149 (40%), Positives = 96/149 (64%)
Query: 173 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKY--KSGLFEGLTSGSGRL 229
TG+T+ L+S T I+G K N +TV DG +Y++DSS+K+ + LF + L
Sbjct: 178 TGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGL 237
Query: 230 IQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289
++Y+ TK+ KVL+ L F NGV+LS E FV+V ET +R+ RYY+ G +G +++F++
Sbjct: 238 LEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVE 297
Query: 290 GLPGLPDNVKRDSKGNFLVSLVCPVEQPS 318
+PGLPDN++ S G + V++ PV +P+
Sbjct: 298 NMPGLPDNIRLSSSGGYWVAM--PVVRPN 324
|
|
| FB|FBgn0015737 Hmu "Hemomucin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 65/186 (34%), Positives = 103/186 (55%)
Query: 9 ISVVVGIVAITFYPGLEPE--IDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPE 66
++ ++ + I PGL P F + V PP+ L+G L N L AE+L E ++GPE
Sbjct: 12 MNFMIFFLLIILMPGLPPRTTFPFKDYIVTPPKDLKGALESNFHLEGAERLLEGRVYGPE 71
Query: 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-L 125
++ ++Y G+ GG ++KL+ + V K+G+ C E +CGRPLG+ FD G L
Sbjct: 72 CLIARNNEIYTGIHGGEVIKLTSNHVTHVTKIGQPCEDIYEESRCGRPLGLAFDTQGNNL 131
Query: 126 HVADAYFGLYKVNVTTGQTEQLISMDTEIDGA---KP-QIPNSVTVDSDGQTGQTEQLIS 181
+ADAY+GL++V++ T + L+S E+ G +P +I N VTV +G T+ S
Sbjct: 132 IIADAYYGLWQVDLGTNKKTLLVSPAQELAGKSINRPAKIFNGVTVSKEGDVYWTDS--S 189
Query: 182 MDTEID 187
D I+
Sbjct: 190 SDFTIE 195
|
|
| UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 8.2e-24, P = 8.2e-24
Identities = 57/142 (40%), Positives = 91/142 (64%)
Query: 175 QTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSG-----LFEGLTSGSGR 228
+ + L+S +T I+G K N +TV DG +Y++DSS+K++ L EG + GR
Sbjct: 180 EVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEG--TDDGR 237
Query: 229 LIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288
L++Y+ +TK+ KVL+ +L F NGV+LS E FV+V E R+ R+Y+ G +G ++VF+
Sbjct: 238 LLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFV 297
Query: 289 DGLPGLPDNVKRDSKGNFLVSL 310
+ LPG PDN++ S G + VS+
Sbjct: 298 ENLPGFPDNIRASSSGGYWVSM 319
|
|
| UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 54/142 (38%), Positives = 92/142 (64%)
Query: 175 QTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSG-----LFEGLTSGSGR 228
+ + L+S + I+G K N +T+ DG +Y++DSS+K++ + EG + GR
Sbjct: 180 EVKLLVSSEIPIEGRKMSFVNDLTITQDGKKIYFTDSSSKWQRRDYLLLVMEG--TDDGR 237
Query: 229 LIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288
L++Y+ +TK+ KVL+ L F NGV+LS +E FV+VAET +R+ R+Y+ G +G +++F+
Sbjct: 238 LLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFVLVAETTMARIRRFYVSGLMKGGADLFV 297
Query: 289 DGLPGLPDNVKRDSKGNFLVSL 310
+ LPG PDN++ S G + V +
Sbjct: 298 ENLPGFPDNIRPSSSGGYWVGM 319
|
|
| UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 66/174 (37%), Positives = 95/174 (54%)
Query: 4 FRNFFISVVVGIVAITFYPG---LEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFEN 60
FR F+ + V + AI LE ID +F P + G L N KL AE+LFEN
Sbjct: 9 FRMTFLMLAVSL-AIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLQPNTKLRQAERLFEN 67
Query: 61 EIHGPEAVVKHKGD-LYMGVDGGHILKLSGGKLVPVVKLGKD-CYGFKYEQQCGRPLGIK 118
+++GPE++V + GD L+ G G ++KL G++ + + G C E CGRPLGI+
Sbjct: 68 QLNGPESIV-NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIR 126
Query: 119 FDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ 172
NG L V DAY GL++VN + L+S +T I+G K N +T+ DG+
Sbjct: 127 VGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGR 180
|
|
| TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 50/140 (35%), Positives = 89/140 (63%)
Query: 184 TEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY-KSGLFEGLTSG--SGRLIQYNPKTKKNK 240
T ++G N + + +G ++++D+S +Y ++ F L G +GRL++Y+P TK
Sbjct: 188 THVEGKPILFANDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTH 247
Query: 241 VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300
+++ L F NG++LS D+SF++ ET + R+ +Y+L+GPK G+ EV D LPG PDNV+
Sbjct: 248 IVLEGLAFPNGIQLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVAD-LPGFPDNVRI 306
Query: 301 DSKGNFLVSLVCPVEQPSEQ 320
+ +G F V++ C P+++
Sbjct: 307 NEEGQFWVAIDC-CRTPAQE 325
|
|
| RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 55/144 (38%), Positives = 91/144 (63%)
Query: 172 QTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSG-----LFEGLTSG 225
Q + L+S +T I+G K N +T+ DG +Y++DSS+K++ + EG +
Sbjct: 138 QKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEG--TD 195
Query: 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSE 285
GRL++Y+ TK+ KVL+ L F NGV+LS +E FV+VAET +R+ R Y+ G +G ++
Sbjct: 196 DGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGAD 255
Query: 286 VFIDGLPGLPDNVKRDSKGNFLVS 309
+F++ +PG PDN++ S G + V+
Sbjct: 256 MFVENMPGFPDNIRPSSSGGYWVA 279
|
|
| MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 55/142 (38%), Positives = 90/142 (63%)
Query: 172 QTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLT---SGSG 227
Q + L+S +T I+G K N +TV DG +Y++DSS+K++ + L + G
Sbjct: 177 QKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDG 236
Query: 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVF 287
RL++Y+ TK+ KVL+ L F NGV+LS +E FV+VAET +R+ R Y+ G +G +++F
Sbjct: 237 RLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMF 296
Query: 288 IDGLPGLPDNVKRDSKGNFLVS 309
++ +PG PDN++ S G + V+
Sbjct: 297 VENMPGFPDNIRPSSSGGYWVA 318
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7TP48 | APMAP_RAT | No assigned EC number | 0.3482 | 0.7566 | 0.6781 | yes | N/A |
| Q3T0E5 | APMAP_BOVIN | No assigned EC number | 0.3388 | 0.7715 | 0.6310 | yes | N/A |
| Q9D7N9 | APMAP_MOUSE | No assigned EC number | 0.3450 | 0.8130 | 0.6602 | yes | N/A |
| Q9HDC9 | APMAP_HUMAN | No assigned EC number | 0.3481 | 0.7537 | 0.6105 | yes | N/A |
| Q803F5 | APMAP_DANRE | No assigned EC number | 0.3333 | 0.7477 | 0.6072 | yes | N/A |
| Q5ZIF1 | APMAP_CHICK | No assigned EC number | 0.3605 | 0.8308 | 0.6746 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 337 | |||
| pfam03088 | 89 | pfam03088, Str_synth, Strictosidine synthase | 6e-25 | |
| COG3386 | 307 | COG3386, COG3386, Gluconolactonase [Carbohydrate t | 1e-17 | |
| pfam08450 | 245 | pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re | 2e-05 | |
| pfam01731 | 86 | pfam01731, Arylesterase, Arylesterase | 0.004 |
| >gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 6e-25
Identities = 37/89 (41%), Positives = 62/89 (69%), Gaps = 4/89 (4%)
Query: 195 NSVTVDSD-GMVYWSDSSTKY-KSGLFEGLTSG--SGRLIQYNPKTKKNKVLIANLHFAN 250
N++ VD + G++Y++DSS++Y + + + G +GRL++Y+P TK KVL+ +L+F N
Sbjct: 1 NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPN 60
Query: 251 GVELSADESFVIVAETMSSRVHRYYLKGP 279
G+ LS D SFV+ ET R+ +Y++KGP
Sbjct: 61 GIALSPDGSFVLFCETPMKRISKYWIKGP 89
|
Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89 |
| >gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-17
Identities = 45/147 (30%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 187 DGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL 246
DG PN VD DG W + G E +G L + +P ++L +L
Sbjct: 106 DGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEE--RPTGSLYRVDPDGGVVRLLDDDL 162
Query: 247 HFANGVELSADESFVIVAETMSSRVHRYYL---KGPKQGK-SEVFIDGLPGLPDNVKRDS 302
NG+ S D + VA+T ++R+HRY L GP G+ V D PGLPD + D+
Sbjct: 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222
Query: 303 KGNFLVSLVCPVEQPSEQAGNIRDPAG 329
GN V+ V +P G
Sbjct: 223 DGNLWVAAV-----WGGGRVVRFNPDG 244
|
Length = 307 |
| >gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 170 DGQTGQTEQLISMDTEIDGAKPQI-PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR 228
D TG+ L +++ +P N VD DG ++ G G
Sbjct: 66 DLDTGELTTL----ADLEPDEPLNRFNDGKVDPDGRFWFGTM------GFDIAPGGEPGA 115
Query: 229 LIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRY-Y-LKGPKQGKSEV 286
L + +P K +V + + +NG+ S D + A++ + R+ + Y G V
Sbjct: 116 LYRLDPDGKVERV-LDGITISNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRRV 174
Query: 287 FIDG--LPGLPDNVKRDSKGN 305
F D G PD + D++GN
Sbjct: 175 FADFKDGDGEPDGMAVDAEGN 195
|
This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245 |
| >gnl|CDD|190082 pfam01731, Arylesterase, Arylesterase | Back alignment and domain information |
|---|
Score = 35.5 bits (82), Expect = 0.004
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 218 LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRY 274
L L ++ Y+P + KV+ + FANG+ S D+ ++ VA ++ +H
Sbjct: 27 LEMYLGLIWTGVVYYSPS--EVKVVASGFSFANGINYSPDKKYIYVASSLRHSIHVM 81
|
This family consists of arylesterases (Also known as serum paraoxonase) EC:3.1.1.2. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity. Human arylesterase (PON1) is associated with HDL and may protect against LDL oxidation. Length = 86 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| KOG1520|consensus | 376 | 100.0 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.95 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.94 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 99.79 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.77 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.71 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.7 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.64 | |
| KOG4499|consensus | 310 | 99.56 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.55 | |
| KOG4659|consensus | 1899 | 99.48 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.48 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.43 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.39 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.38 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.38 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.37 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.34 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.34 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.28 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.13 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.11 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.1 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.09 | |
| KOG1214|consensus | 1289 | 99.09 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.02 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.99 | |
| KOG4659|consensus | 1899 | 98.92 | ||
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.84 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.84 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.81 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.78 | |
| KOG1214|consensus | 1289 | 98.74 | ||
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.73 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.68 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.64 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 98.63 | |
| KOG1520|consensus | 376 | 98.59 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.57 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 98.56 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.55 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.55 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.3 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.29 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.26 | |
| KOG4499|consensus | 310 | 98.2 | ||
| KOG0291|consensus | 893 | 98.19 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.14 | |
| KOG0318|consensus | 603 | 98.12 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.1 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.09 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 98.08 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.04 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.04 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.02 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.0 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.95 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.93 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.87 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.83 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.79 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.78 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.72 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.72 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.68 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.68 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.67 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.66 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.61 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.59 | |
| KOG0315|consensus | 311 | 97.58 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.57 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.57 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.54 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.51 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.51 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.45 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 97.41 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.39 | |
| KOG0318|consensus | 603 | 97.38 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.34 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.33 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 97.33 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.33 | |
| KOG0266|consensus | 456 | 97.26 | ||
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 97.2 | |
| KOG1446|consensus | 311 | 97.2 | ||
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.18 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 97.1 | |
| KOG0291|consensus | 893 | 97.1 | ||
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.08 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.05 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.02 | |
| KOG0279|consensus | 315 | 96.98 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.96 | |
| KOG2055|consensus | 514 | 96.96 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.93 | |
| KOG1446|consensus | 311 | 96.91 | ||
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.88 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.84 | |
| KOG0282|consensus | 503 | 96.79 | ||
| KOG0266|consensus | 456 | 96.75 | ||
| PTZ00421 | 493 | coronin; Provisional | 96.73 | |
| KOG0315|consensus | 311 | 96.7 | ||
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 96.7 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.69 | |
| KOG0272|consensus | 459 | 96.64 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.62 | |
| KOG0263|consensus | 707 | 96.61 | ||
| KOG0286|consensus | 343 | 96.59 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.59 | |
| KOG2055|consensus | 514 | 96.57 | ||
| KOG0303|consensus | 472 | 96.48 | ||
| KOG1539|consensus | 910 | 96.48 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.44 | |
| KOG2139|consensus | 445 | 96.37 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.35 | |
| PTZ00420 | 568 | coronin; Provisional | 96.35 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.33 | |
| KOG1215|consensus | 877 | 96.31 | ||
| PTZ00421 | 493 | coronin; Provisional | 96.24 | |
| KOG0279|consensus | 315 | 96.18 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.13 | |
| KOG2106|consensus | 626 | 96.07 | ||
| KOG0289|consensus | 506 | 96.05 | ||
| KOG0278|consensus | 334 | 95.95 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.94 | |
| KOG0289|consensus | 506 | 95.81 | ||
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.7 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.62 | |
| KOG1273|consensus | 405 | 95.5 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.48 | |
| KOG1274|consensus | 933 | 95.41 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.41 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.36 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.28 | |
| KOG0263|consensus | 707 | 95.22 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.21 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 95.2 | |
| KOG0271|consensus | 480 | 95.19 | ||
| PTZ00420 | 568 | coronin; Provisional | 95.16 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.13 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 95.12 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 95.04 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.85 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 94.48 | |
| KOG2048|consensus | 691 | 94.46 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.38 | |
| KOG0271|consensus | 480 | 94.34 | ||
| KOG0299|consensus | 479 | 94.28 | ||
| KOG0288|consensus | 459 | 94.22 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.21 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.14 | |
| KOG0278|consensus | 334 | 94.04 | ||
| KOG0646|consensus | 476 | 93.86 | ||
| KOG0282|consensus | 503 | 93.83 | ||
| KOG0286|consensus | 343 | 93.79 | ||
| KOG1215|consensus | 877 | 93.59 | ||
| KOG1407|consensus | 313 | 93.47 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.38 | |
| KOG0296|consensus | 399 | 93.29 | ||
| KOG1539|consensus | 910 | 93.28 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 93.22 | |
| KOG4441|consensus | 571 | 93.09 | ||
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.88 | |
| KOG0643|consensus | 327 | 92.87 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.79 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.76 | |
| KOG0272|consensus | 459 | 92.66 | ||
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 92.64 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.04 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 91.96 | |
| KOG2111|consensus | 346 | 91.9 | ||
| KOG0293|consensus | 519 | 91.8 | ||
| KOG0294|consensus | 362 | 91.63 | ||
| smart00284 | 255 | OLF Olfactomedin-like domains. | 91.62 | |
| KOG0645|consensus | 312 | 91.5 | ||
| KOG0973|consensus | 942 | 91.34 | ||
| KOG0293|consensus | 519 | 91.28 | ||
| KOG1274|consensus | 933 | 91.18 | ||
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 90.84 | |
| KOG2096|consensus | 420 | 90.77 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.64 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 90.61 | |
| KOG0316|consensus | 307 | 90.6 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 90.46 | |
| KOG2110|consensus | 391 | 90.45 | ||
| KOG0283|consensus | 712 | 90.35 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 90.34 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.13 | |
| KOG0771|consensus | 398 | 90.12 | ||
| KOG2048|consensus | 691 | 90.06 | ||
| KOG4378|consensus | 673 | 89.85 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.61 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 89.41 | |
| KOG0319|consensus | 775 | 89.26 | ||
| KOG0292|consensus | 1202 | 89.19 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.82 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 88.81 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 88.73 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 88.7 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 88.65 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 88.62 | |
| KOG0973|consensus | 942 | 88.41 | ||
| KOG2139|consensus | 445 | 88.34 | ||
| KOG2110|consensus | 391 | 88.16 | ||
| KOG2919|consensus | 406 | 87.94 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.88 | |
| KOG3881|consensus | 412 | 87.86 | ||
| KOG0772|consensus | 641 | 87.58 | ||
| KOG4441|consensus | 571 | 87.57 | ||
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 87.53 | |
| KOG0772|consensus | 641 | 87.47 | ||
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 87.34 | |
| KOG0313|consensus | 423 | 87.24 | ||
| KOG3914|consensus | 390 | 86.98 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 86.84 | |
| KOG0265|consensus | 338 | 86.41 | ||
| KOG0275|consensus | 508 | 86.17 | ||
| KOG3881|consensus | 412 | 86.15 | ||
| KOG0268|consensus | 433 | 86.12 | ||
| PF07494 | 24 | Reg_prop: Two component regulator propeller; Inter | 86.11 | |
| KOG0273|consensus | 524 | 85.5 | ||
| KOG0265|consensus | 338 | 85.2 | ||
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 85.03 | |
| KOG1009|consensus | 434 | 84.77 | ||
| KOG0319|consensus | 775 | 84.73 | ||
| KOG0299|consensus | 479 | 84.7 | ||
| KOG2321|consensus | 703 | 83.95 | ||
| KOG1407|consensus | 313 | 83.76 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 83.47 | |
| KOG0639|consensus | 705 | 83.04 | ||
| KOG2321|consensus | 703 | 82.76 | ||
| KOG4649|consensus | 354 | 82.69 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 82.44 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 82.3 | |
| KOG1963|consensus | 792 | 81.76 | ||
| KOG0306|consensus | 888 | 81.58 | ||
| KOG0281|consensus | 499 | 81.49 | ||
| KOG1009|consensus | 434 | 81.29 | ||
| KOG0310|consensus | 487 | 80.42 | ||
| KOG0646|consensus | 476 | 80.33 | ||
| KOG1273|consensus | 405 | 80.23 | ||
| KOG0643|consensus | 327 | 80.21 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 80.08 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 80.03 |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=311.23 Aligned_cols=259 Identities=41% Similarity=0.667 Sum_probs=215.7
Q ss_pred CceeeeeCCCCCCcCcchhccccccCceeccCcccCccEEEeeCCe--EEEEecCcEEEEEeCCceeEEEecCcccc---
Q psy4771 29 DFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGD--LYMGVDGGHILKLSGGKLVPVVKLGKDCY--- 103 (337)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~P~~i~~~~g~--ly~d~~~g~I~~~~~~~~~~~~~~g~~~~--- 103 (337)
.+..+...++.+..+.+.+++.+...|.+..+.+..|+.+.+.+|. +|+....|++-+.+.... .....|.
T Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s----~~~~~~~~~~ 106 (376)
T KOG1520|consen 31 GSPDDRLFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDS----TNRSQCCDPG 106 (376)
T ss_pred CCchhcccCCCCcccccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecccc----ccccccCCCc
Confidence 3345555666667888889998888998888777777777774444 668888998888765311 1123333
Q ss_pred CccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeee
Q psy4771 104 GFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISM 182 (337)
Q Consensus 104 ~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~ 182 (337)
....++.|+||.||+++..| +|||||++.|++.|++++++.+.+.+ +.+|+
T Consensus 107 ~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~---~~~G~------------------------- 158 (376)
T KOG1520|consen 107 SFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLAD---EAEGK------------------------- 158 (376)
T ss_pred ceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccc---cccCe-------------------------
Confidence 34557899999999999998 99999999999999999988777665 44443
Q ss_pred ccccCCCCCCCCccEEEcCCCcEEEEcCCCCc--cCceeeee-ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCC
Q psy4771 183 DTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGL-TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES 259 (337)
Q Consensus 183 ~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~--~~~~~~~~-~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~ 259 (337)
++.+.|++.|+++|.+||||++++| ++.+..++ .+++||+++||+.++.++++.+++.+|||+++|+|++
T Consensus 159 -------~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 159 -------PFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGS 231 (376)
T ss_pred -------eeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCC
Confidence 7889999999999999999999987 56666654 6799999999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC--------CCCchhhccccCC
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP--------VEQPSEQAGNIRD 326 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~--------~~~p~~~~~~~~~ 326 (337)
++.+||+...||.||+++|.+.|+.++|++++||+||||+.+++|++|||..+. ..|||+++++.+.
T Consensus 232 fvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~ 306 (376)
T KOG1520|consen 232 FVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKL 306 (376)
T ss_pred EEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999887 4566666665555
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=205.36 Aligned_cols=211 Identities=29% Similarity=0.419 Sum_probs=157.2
Q ss_pred chhccccccCceeccCcccCccEEEeeCC-eEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECC
Q psy4771 45 LALNEKLNNAEKLFENEIHGPEAVVKHKG-DLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK 121 (337)
Q Consensus 45 ~~~~~~l~~~~~~~~g~~~~P~~i~~~~g-~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~ 121 (337)
.++...+.....+.||++|.|+ .+ ++|+|+.+++|+++++. +.+.+. .....+.++.++.
T Consensus 14 ~~~~~~~~~~~~~gEgP~w~~~-----~~~L~w~DI~~~~i~r~~~~~g~~~~~~------------~p~~~~~~~~~d~ 76 (307)
T COG3386 14 AAPVTLLDKGATLGEGPVWDPD-----RGALLWVDILGGRIHRLDPETGKKRVFP------------SPGGFSSGALIDA 76 (307)
T ss_pred ccceeEeecccccccCccCcCC-----CCEEEEEeCCCCeEEEecCCcCceEEEE------------CCCCcccceeecC
Confidence 3445567778888999999887 44 45699999999999983 333332 2234588999999
Q ss_pred CCcEEEEECCCcEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 122 NGALHVADAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 122 ~G~lyVad~~~gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
.|+|++++ +++++++.+.+.. +.+.. ...+ .+.+.|||+.++
T Consensus 77 ~g~Lv~~~--~g~~~~~~~~~~~~t~~~~---~~~~--------------------------------~~~~r~ND~~v~ 119 (307)
T COG3386 77 GGRLIACE--HGVRLLDPDTGGKITLLAE---PEDG--------------------------------LPLNRPNDGVVD 119 (307)
T ss_pred CCeEEEEc--cccEEEeccCCceeEEecc---ccCC--------------------------------CCcCCCCceeEc
Confidence 99999998 8888888765655 55543 2222 367899999999
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC--
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG-- 278 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g-- 278 (337)
++|++||+++.+ . + .........|+||++||.++..+.+.+.+..||||||||||+++|++|+..++|++|+.+.
T Consensus 120 pdG~~wfgt~~~-~-~-~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 120 PDGRIWFGDMGY-F-D-LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred CCCCEEEeCCCc-c-c-cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 999999999983 0 0 0011245668999999965555444445999999999999999999999999999999972
Q ss_pred CCCCc--eeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 279 PKQGK--SEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 279 ~~~~~--~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
..... ..++.+..+|.|||+++|.+|++|++...
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~ 232 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW 232 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence 22222 24555567899999999999999965444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=199.23 Aligned_cols=194 Identities=34% Similarity=0.517 Sum_probs=147.8
Q ss_pred ccEEEee--CCeEE-EEecCcEEEEEeCCc-eeEEEecCccccCccccCccCCcceEEEC-CCCcEEEEECCCcEEEEEc
Q psy4771 65 PEAVVKH--KGDLY-MGVDGGHILKLSGGK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFD-KNGALHVADAYFGLYKVNV 139 (337)
Q Consensus 65 P~~i~~~--~g~ly-~d~~~g~I~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d-~~G~lyVad~~~gv~~vd~ 139 (337)
||+++++ ++.|| +|..+++|+++++.+ ...+... ..|.|++++ ++|++|||+. .++..+|+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------------~~~~G~~~~~~~g~l~v~~~-~~~~~~d~ 67 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------------PGPNGMAFDRPDGRLYVADS-GGIAVVDP 67 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------------SSEEEEEEECTTSEEEEEET-TCEEEEET
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------------CCCceEEEEccCCEEEEEEc-CceEEEec
Confidence 4566662 67777 999999999999843 2222211 229999999 7899999984 66777799
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
++++++.+... ..+. .++..|||+++|++|++|||++......
T Consensus 68 ~~g~~~~~~~~---~~~~-------------------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~--- 110 (246)
T PF08450_consen 68 DTGKVTVLADL---PDGG-------------------------------VPFNRPNDVAVDPDGNLYVTDSGGGGAS--- 110 (246)
T ss_dssp TTTEEEEEEEE---ETTC-------------------------------SCTEEEEEEEE-TTS-EEEEEECCBCTT---
T ss_pred CCCcEEEEeec---cCCC-------------------------------cccCCCceEEEcCCCCEEEEecCCCccc---
Confidence 99999888863 1121 1577899999999999999998753200
Q ss_pred eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC--CCCceeeeecC--CCCCC
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--KQGKSEVFIDG--LPGLP 295 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--~~~~~~~~~~~--~~g~P 295 (337)
....|+|++++++ +++..+..++..||||++++|+++|||+++..++|++|+++.. .....+++++. ..+.|
T Consensus 111 ---~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p 186 (246)
T PF08450_consen 111 ---GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP 186 (246)
T ss_dssp ---CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE
T ss_pred ---cccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCC
Confidence 1111899999998 8888889999999999999999999999999999999999743 34566777552 23469
Q ss_pred CceeECCCCCEEEEecCC
Q psy4771 296 DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~ 313 (337)
||+++|++|+||||.+..
T Consensus 187 DG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 187 DGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEEBTTS-EEEEEETT
T ss_pred CcceEcCCCCEEEEEcCC
Confidence 999999999999998865
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=132.18 Aligned_cols=85 Identities=52% Similarity=0.893 Sum_probs=68.2
Q ss_pred ccEEEcCC-CcEEEEcCCCCc--cCceeeee-ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 195 NSVTVDSD-GMVYWSDSSTKY--KSGLFEGL-TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 195 n~v~vd~~-G~lyvtd~~~~~--~~~~~~~~-~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
||++|+++ |.|||||++.+| .+++..++ ..++|+|++|||.+++++++.+++.+||||++++|+++|+|+|+..+|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 899999999887 44555544 678999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCC
Q psy4771 271 VHRYYLKGP 279 (337)
Q Consensus 271 I~~~~~~g~ 279 (337)
|.||+++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999873
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-17 Score=168.74 Aligned_cols=217 Identities=19% Similarity=0.246 Sum_probs=145.5
Q ss_pred CcccCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEE-ecCccc--cCccccCccCCcceEEECCCC-cEEEEECC
Q psy4771 60 NEIHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVV-KLGKDC--YGFKYEQQCGRPLGIKFDKNG-ALHVADAY 131 (337)
Q Consensus 60 g~~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~-~~g~~~--~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~ 131 (337)
.++..|.++++ .++.+| +|..++||++++. ++..... ..|..+ ++......+.+|.||++|++| .|||+|..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 35678999999 368898 9999999999987 4332211 112211 223334567889999999987 58999987
Q ss_pred C-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEc
Q psy4771 132 F-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSD 209 (337)
Q Consensus 132 ~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd 209 (337)
+ .|+++|..++.+++++... ..|.. .+| +. ......++.|.++++++ +|.+||+|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G--~~g~~----------~~g-----g~------~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNG--TKGSD----------YQG-----GK------KGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CceEEEEecCCCEEEEEeccC--cccCC----------CCC-----Ch------hhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 4 4899999989888887521 01100 000 00 00011367899999999 67899999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe---------------ccccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI---------------ANLHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~---------------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
...+ +|+++|+.++.+.... ..+..|+||++++||+.|||+++.+++|.+|
T Consensus 702 ~~~~--------------~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 702 AGQH--------------QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred CCCC--------------eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 8643 5666665555443221 1356899999999999999999999999999
Q ss_pred EeeCCCCCc-----------eeeeec--C-----CCCCCCceeECCCCCEEEEecCC
Q psy4771 275 YLKGPKQGK-----------SEVFID--G-----LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 275 ~~~g~~~~~-----------~~~~~~--~-----~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++++..... ...|.+ + .-..|.|+++|++|++||+....
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 986432100 000000 0 01248999999999999999766
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-15 Score=157.17 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=140.6
Q ss_pred ccCccEEEee--CCeEE-EEecCcEEEEEeC--CceeEEEecCcccc----C-ccccCccCCcceEEECC-CCcEEEEEC
Q psy4771 62 IHGPEAVVKH--KGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCY----G-FKYEQQCGRPLGIKFDK-NGALHVADA 130 (337)
Q Consensus 62 ~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~----~-~~~~~~~~~P~Gl~~d~-~G~lyVad~ 130 (337)
+..|.+|+++ ++.|| +|..+++|.+++. +.+.++...|.... + ......+..|.++++++ +|+|||+|.
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 4579999993 56688 8989999999986 34444433222110 0 00112357899999999 579999997
Q ss_pred CC-cEEEEEcCCCeEEEEeccccc--cCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EE
Q psy4771 131 YF-GLYKVNVTTGQTEQLISMDTE--IDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VY 206 (337)
Q Consensus 131 ~~-gv~~vd~~~g~~~~l~~~~~~--~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-ly 206 (337)
.+ .|+++|..++.+..+...... ..|. ......+..|++|+++++|. ||
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~---------------------------~~~~~~~~~P~GIavspdG~~LY 755 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGS---------------------------SGTSTSFAQPSGISLSPDLKELY 755 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCC---------------------------ccccccccCccEEEEeCCCCEEE
Confidence 64 599999988877766531100 0010 00011467899999999986 99
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe----------------------ccccceeeEEEccCCCEEEEE
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI----------------------ANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~----------------------~~~~~p~gia~~~dg~~lyva 264 (337)
|+|...+ +|.++|++++....+. ..+..|.|+++++||+ |||+
T Consensus 756 VADs~n~--------------~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA 820 (1057)
T PLN02919 756 IADSESS--------------SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA 820 (1057)
T ss_pred EEECCCC--------------eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE
Confidence 9998643 7777777665433221 1145799999999995 9999
Q ss_pred eCCCCEEEEEEeeCCCCCcee-----eeecC-----CCCCCCceeECCCCCEEEEecCC
Q psy4771 265 ETMSSRVHRYYLKGPKQGKSE-----VFIDG-----LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 265 ~~~~~~I~~~~~~g~~~~~~~-----~~~~~-----~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++.+++|.+|+.++....... -+.++ .-..|.||++|++|++||+....
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 999999999998653211100 00000 11259999999999999999766
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-15 Score=128.40 Aligned_cols=224 Identities=14% Similarity=0.151 Sum_probs=160.0
Q ss_pred CceeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEE
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD 129 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad 129 (337)
...+..-.-.+|..++. .+|.+| ++...|.|-++|+ |+++.. .+ ....+|.||.+++||..||+|
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-pL----------g~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-PL----------GSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEE-ec----------CCCCCCceEEECCCCCeeEec
Confidence 44444444458999998 788777 9999999999998 555443 23 445789999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-------------cccceeeeccccCCCCCCCCcc
Q psy4771 130 AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-------------QTEQLISMDTEIDGAKPQIPNS 196 (337)
Q Consensus 130 ~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-------------~~~~v~~~~~~~~~~~~~~pn~ 196 (337)
....|.++|+++.+++++.-+....++. =+..++|++|++- ..+.|.++.. .....|++
T Consensus 122 ~~~aI~R~dpkt~evt~f~lp~~~a~~n----let~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa----PqG~gpyG 193 (353)
T COG4257 122 TGLAIGRLDPKTLEVTRFPLPLEHADAN----LETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA----PQGGGPYG 193 (353)
T ss_pred CcceeEEecCcccceEEeecccccCCCc----ccceeeCCCccEEEeeccccceecCcccCceeeecc----CCCCCCcc
Confidence 8889999999999998886532222222 1446789999885 1123333322 23457999
Q ss_pred EEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc---ccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 197 VTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN---LHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 197 v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
|++.+||.+|++.-..+ .|.++||.++..+++... -.....|-.++.| ++|+++.+..++.+
T Consensus 194 i~atpdGsvwyaslagn--------------aiaridp~~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~r 258 (353)
T COG4257 194 ICATPDGSVWYASLAGN--------------AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHR 258 (353)
T ss_pred eEECCCCcEEEEecccc--------------ceEEcccccCCcceecCCCcccccccccccCccC-cEEEeccCCceeeE
Confidence 99999999999876543 788999998866554322 1233456677778 69999999999999
Q ss_pred EEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 274 YYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|+.+... -.+--..+....|+.|.+|..|++|.+.+..
T Consensus 259 fdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 259 FDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred eCccccc--ceeeeCCCCCCCcceeeeccCCcEEeecccc
Confidence 9986431 1111112233469999999999999988766
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-15 Score=130.65 Aligned_cols=180 Identities=24% Similarity=0.423 Sum_probs=123.4
Q ss_pred CccEEEee--CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-------
Q psy4771 64 GPEAVVKH--KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF------- 132 (337)
Q Consensus 64 ~P~~i~~~--~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~------- 132 (337)
+|.++++. ++.+|+....+ +..++. ++.+.+...-.. .....+|+++++|++|+||+++...
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG
T ss_pred CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC------CcccCCCceEEEcCCCCEEEEecCCCcccccc
Confidence 48888884 78899555555 344464 555554432100 1256789999999999999998642
Q ss_pred -c-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEc
Q psy4771 133 -G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD 209 (337)
Q Consensus 133 -g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd 209 (337)
+ +++++++ +++..+.. .+..||+|+++++|+ ||++|
T Consensus 114 ~g~v~~~~~~-~~~~~~~~----------------------------------------~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVAD----------------------------------------GLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp SEEEEEEETT-SEEEEEEE----------------------------------------EESSEEEEEEETTSSEEEEEE
T ss_pred ccceEEECCC-CeEEEEec----------------------------------------CcccccceEECCcchheeecc
Confidence 3 8999998 77766654 356799999999996 99999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCC--CCee---EEEe--cc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPK--TKKN---KVLI--AN-LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ 281 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~--~~~~---~~~~--~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~ 281 (337)
+... +|++|+.+ ++++ +++. .. ...|.|++++.+| .|||+....++|.+|+.+|...
T Consensus 153 s~~~--------------~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~~~ 217 (246)
T PF08450_consen 153 SFNG--------------RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGKLL 217 (246)
T ss_dssp TTTT--------------EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEE
T ss_pred cccc--------------eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCccEE
Confidence 8743 78888764 3312 2222 12 2369999999999 5999999999999999875422
Q ss_pred CceeeeecCCC-CCCCceeEC-CC-CCEEEEec
Q psy4771 282 GKSEVFIDGLP-GLPDNVKRD-SK-GNFLVSLV 311 (337)
Q Consensus 282 ~~~~~~~~~~~-g~Pdgi~~d-~d-G~l~va~~ 311 (337)
.. +. +| ..|.++++. ++ ++|||+..
T Consensus 218 ~~----i~-~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 218 RE----IE-LPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EE----EE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EE----Ec-CCCCCEEEEEEECCCCCEEEEEeC
Confidence 22 22 23 368999994 45 45999874
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-14 Score=117.86 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
-+..||-.+||+|+.|...++... ..+..-.|.|++.- .+++++.+...+..+||++++.|.+..|+.|+.+..
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~-----~~le~~~g~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFG-----DDLEPIGGELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCceeeeeecccc-----ccccccccEEEEec-cCCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence 356799999999999876665321 11223345555554 468888888889999999999999999999999999
Q ss_pred EEEEE--eeCCCCCceeeeecC------CCCCCCceeECCCCCEEEEecCC----CCCchhhccccC
Q psy4771 271 VHRYY--LKGPKQGKSEVFIDG------LPGLPDNVKRDSKGNFLVSLVCP----VEQPSEQAGNIR 325 (337)
Q Consensus 271 I~~~~--~~g~~~~~~~~~~~~------~~g~Pdgi~~d~dG~l~va~~~~----~~~p~~~~~~~~ 325 (337)
|..|+ ..++.+.++.++++- .+-.|||+++|.+|+||||.+.+ ..+|...++|.+
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 96666 455556666666541 23369999999999999999988 556766665543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-12 Score=120.03 Aligned_cols=230 Identities=16% Similarity=0.212 Sum_probs=142.6
Q ss_pred ccCccEEEe--eCCeEE-EEe---cCcEEEEEe--C--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEEC
Q psy4771 62 IHGPEAVVK--HKGDLY-MGV---DGGHILKLS--G--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA 130 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~---~~g~I~~~~--~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~ 130 (337)
.-.|.++++ +++.|| +.. ..+.|..+. . ++++.+.... .....|..++++++| .|||+..
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~---------~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP---------SGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---------ESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---------cCCCCcEEEEEecCCCEEEEEEc
Confidence 457999999 678899 444 356776664 3 3444443221 134668999999998 7888875
Q ss_pred CCc-EEEEEcCC-CeEEEEeccc------cccCCCCCCCCCceeeCCCCCcc-----cccceeeecccc-----------
Q psy4771 131 YFG-LYKVNVTT-GQTEQLISMD------TEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEI----------- 186 (337)
Q Consensus 131 ~~g-v~~vd~~~-g~~~~l~~~~------~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~----------- 186 (337)
..+ +..++.+. |.+....... .....+....|+.+.++++|+++ ..++|..+.-.-
T Consensus 107 ~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 107 GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 544 54444432 5544332110 00111122468899999999987 446666665322
Q ss_pred CCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe------c---cccceeeEEEcc
Q psy4771 187 DGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI------A---NLHFANGVELSA 256 (337)
Q Consensus 187 ~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~------~---~~~~p~gia~~~ 256 (337)
.-.....|..++++++|+ +|+++...+ .=.++.++..++..+.+. . +...|.+|+++|
T Consensus 187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSPDGKYAYVVNELSN------------TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp ECSTTSSEEEEEE-TTSSEEEEEETTTT------------EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred ccccCCCCcEEEEcCCcCEEEEecCCCC------------cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 223457899999999986 998876533 013444554455443322 1 123789999999
Q ss_pred CCCEEEEEeCCCCEEEEEEeeCC--CCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 257 DESFVIVAETMSSRVHRYYLKGP--KQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 257 dg~~lyva~~~~~~I~~~~~~g~--~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
||++|||++.+.+.|..|+++.. .+.....+.. ....|.+|+++++|+ +||+....
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTT
T ss_pred CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCC
Confidence 99999999999999999999642 2222222221 123599999999998 88887655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=128.67 Aligned_cols=218 Identities=18% Similarity=0.261 Sum_probs=142.0
Q ss_pred EEEe--eCCeEE-EEecCcEEEEEeC-------CceeEEEecCccccCcc---------ccCccCCcceEEECCCCcEEE
Q psy4771 67 AVVK--HKGDLY-MGVDGGHILKLSG-------GKLVPVVKLGKDCYGFK---------YEQQCGRPLGIKFDKNGALHV 127 (337)
Q Consensus 67 ~i~~--~~g~ly-~d~~~g~I~~~~~-------~~~~~~~~~g~~~~~~~---------~~~~~~~P~Gl~~d~~G~lyV 127 (337)
.+|+ -+|.|| +|....+|+|+.. ++...++..|+.|.+.. ...++..|.||++|++|.||+
T Consensus 411 y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYf 490 (1899)
T KOG4659|consen 411 YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYF 490 (1899)
T ss_pred EEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEE
Confidence 4555 389999 8888999999964 23445666677665432 245677899999999999999
Q ss_pred EECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEE
Q psy4771 128 ADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVY 206 (337)
Q Consensus 128 ad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~ly 206 (337)
+| +..|++||. +|.+.++...... +.+..||.- +. ++....+.+|.++||+| |+.+|
T Consensus 491 aD-~t~IR~iD~-~giIstlig~~~~---~~~p~~C~~-------------~~----kl~~~~leWPT~LaV~Pmdnsl~ 548 (1899)
T KOG4659|consen 491 AD-GTRIRVIDT-TGIISTLIGTTPD---QHPPRTCAQ-------------IT----KLVDLQLEWPTSLAVDPMDNSLL 548 (1899)
T ss_pred ec-ccEEEEecc-CceEEEeccCCCC---ccCcccccc-------------cc----chhheeeecccceeecCCCCeEE
Confidence 99 467999997 4888888753111 111233321 11 12233688999999999 78899
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe---------------------ccccceeeEEEccCCCEEEEEe
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI---------------------ANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~---------------------~~~~~p~gia~~~dg~~lyva~ 265 (337)
|-|.. -|+++++. +++++.. ..+..+..|+++++| -|||+|
T Consensus 549 Vld~n----------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaE 610 (1899)
T KOG4659|consen 549 VLDTN----------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAE 610 (1899)
T ss_pred Eeecc----------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEe
Confidence 99976 33444332 2222211 124568899999999 699999
Q ss_pred CCCCEEEEEEeeCCCCCceeeeecC-------------------------CCCCCCceeECCCCCEEEEecCCCCCchhh
Q psy4771 266 TMSSRVHRYYLKGPKQGKSEVFIDG-------------------------LPGLPDNVKRDSKGNFLVSLVCPVEQPSEQ 320 (337)
Q Consensus 266 ~~~~~I~~~~~~g~~~~~~~~~~~~-------------------------~~g~Pdgi~~d~dG~l~va~~~~~~~p~~~ 320 (337)
+...+|-|++.-+. .+...+++.. .-.-|..+|+.+||++++|..++ -+++
T Consensus 611 sD~rriNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN---~rIr 686 (1899)
T KOG4659|consen 611 SDGRRINRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN---SRIR 686 (1899)
T ss_pred ccchhhhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc---hhhh
Confidence 99877776665321 1122222210 00138899999999999999665 4455
Q ss_pred ccccCCCc
Q psy4771 321 AGNIRDPA 328 (337)
Q Consensus 321 ~~~~~~p~ 328 (337)
++..+.|.
T Consensus 687 ~Vs~~~~~ 694 (1899)
T KOG4659|consen 687 KVSARMAK 694 (1899)
T ss_pred hhhhcccc
Confidence 55554443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-11 Score=112.74 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=132.1
Q ss_pred CccEEEe--eCCeEE-EEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EE
Q psy4771 64 GPEAVVK--HKGDLY-MGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LY 135 (337)
Q Consensus 64 ~P~~i~~--~~g~ly-~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~ 135 (337)
+|..+++ ++..|| ++..++.|..|+- ++...+... ...+.|.+++++++| .||++....+ |.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~----------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES----------PLPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee----------cCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 5788888 345788 4556777765542 333322211 223568999999999 6788865433 66
Q ss_pred EEEcC-CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCC------------CCCCCCccE
Q psy4771 136 KVNVT-TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG------------AKPQIPNSV 197 (337)
Q Consensus 136 ~vd~~-~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~------------~~~~~pn~v 197 (337)
.++.+ .+....... ...+. ..|+.++++++|+.+ ..+.|..++..-.+ .....|+++
T Consensus 106 v~~~~~~g~~~~~~~---~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~ 180 (330)
T PRK11028 106 VSPLDKDGIPVAPIQ---IIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM 180 (330)
T ss_pred EEEECCCCCCCCcee---eccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence 66654 232211111 11121 248899999999887 33555555432111 124568999
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec---------cccceeeEEEccCCCEEEEEeCC
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---------NLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---------~~~~p~gia~~~dg~~lyva~~~ 267 (337)
+++++|+ +|+++...+ .=.+|.++..+++.+.... +..++.+|+++|||+++|+++..
T Consensus 181 ~~~pdg~~lyv~~~~~~------------~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 181 VFHPNQQYAYCVNELNS------------SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred EECCCCCEEEEEecCCC------------EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 9999987 888876432 0033444433343322211 12345679999999999999998
Q ss_pred CCEEEEEEeeCCC-CCceeeeecCCCCCCCceeECCCCC-EEEEec
Q psy4771 268 SSRVHRYYLKGPK-QGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 268 ~~~I~~~~~~g~~-~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~ 311 (337)
.+.|.+|+++... ......... ....|.++++++||+ +||+..
T Consensus 249 ~~~I~v~~i~~~~~~~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 249 ASLISVFSVSEDGSVLSFEGHQP-TETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred CCeEEEEEEeCCCCeEEEeEEEe-ccccCCceEECCCCCEEEEEEc
Confidence 9999999986321 111111111 113589999999996 888875
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-11 Score=111.62 Aligned_cols=184 Identities=21% Similarity=0.273 Sum_probs=121.0
Q ss_pred cCCcceEEECCCC-cEEEEECC---Cc---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccc
Q psy4771 111 CGRPLGIKFDKNG-ALHVADAY---FG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQ 178 (337)
Q Consensus 111 ~~~P~Gl~~d~~G-~lyVad~~---~g---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~ 178 (337)
...|.-|++++++ .||+++.. .+ .++++.++++++.+... ...|. .|++++++++|+.+ ..+.
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~--~~~g~---~p~~i~~~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV--PSGGS---SPCHIAVDPDGRFLYVANYGGGS 110 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--EESSS---CEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee--ccCCC---CcEEEEEecCCCEEEEEEccCCe
Confidence 4679999999998 88999763 23 56677776888777653 22444 59999999999997 2233
Q ss_pred eeeecccc--------------------CCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEE--EcCC
Q psy4771 179 LISMDTEI--------------------DGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQ--YNPK 235 (337)
Q Consensus 179 v~~~~~~~--------------------~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~--~d~~ 235 (337)
+..+.... ..+...+|+.+.++|+|+ +|++|.+.+ +|+. ++..
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D--------------~v~~~~~~~~ 176 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD--------------RVYVYDIDDD 176 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT--------------EEEEEEE-TT
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC--------------EEEEEEEeCC
Confidence 33332110 012346789999999987 999998754 4444 4444
Q ss_pred CCeeEE----EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC--CCCCceeeeec---CCCC--CCCceeECCCC
Q psy4771 236 TKKNKV----LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG--PKQGKSEVFID---GLPG--LPDNVKRDSKG 304 (337)
Q Consensus 236 ~~~~~~----~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g--~~~~~~~~~~~---~~~g--~Pdgi~~d~dG 304 (337)
++++.. -......|+.+++++|++++||++...+.|.+|+++. ........... ...+ .|.+|++++||
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC
Confidence 433422 2344678999999999999999999999999999983 21111121111 1111 47889999999
Q ss_pred C-EEEEecCC
Q psy4771 305 N-FLVSLVCP 313 (337)
Q Consensus 305 ~-l~va~~~~ 313 (337)
+ +||+....
T Consensus 257 ~~lyvsnr~~ 266 (345)
T PF10282_consen 257 RFLYVSNRGS 266 (345)
T ss_dssp SEEEEEECTT
T ss_pred CEEEEEeccC
Confidence 7 89988665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-10 Score=99.88 Aligned_cols=228 Identities=16% Similarity=0.332 Sum_probs=141.3
Q ss_pred ccCccEEEe--eCCeEEEEecC---cEE--EEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC
Q psy4771 62 IHGPEAVVK--HKGDLYMGVDG---GHI--LKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF 132 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly~d~~~---g~I--~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~ 132 (337)
.-.|..+++ ++..||+.... |.| +++|+ |.++.+... .-....|.-+++|++|+..++.+++
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------TLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc---------ccCCCCCeEEEECCCCCEEEEEEcc
Confidence 457999999 34579954443 455 45565 444433211 0122345889999999554444454
Q ss_pred -c---EEEEEcCCCeEEEEeccccccCC-----CCCCCCCceeeCCCCCcc-----cccceeeeccc---------cCCC
Q psy4771 133 -G---LYKVNVTTGQTEQLISMDTEIDG-----AKPQIPNSVTVDSDGQTG-----QTEQLISMDTE---------IDGA 189 (337)
Q Consensus 133 -g---v~~vd~~~g~~~~l~~~~~~~~g-----~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~---------~~~~ 189 (337)
| ++.+..+ |.+...........+ +....++...++++|+++ ..|+|..+.-. ..-+
T Consensus 110 ~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 110 SGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred CceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 4 3334333 544333221111111 111346678899999998 55666666522 2223
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec---------cccceeeEEEccCCC
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---------NLHFANGVELSADES 259 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---------~~~~p~gia~~~dg~ 259 (337)
+...|..|++.|+|+ .|+...-+. .=.++.||+..++.+.+.. +-.....|.+++||+
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~s------------tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNS------------TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCC------------EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 567899999999998 776553321 1256778877677766542 234556799999999
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeec--CCCC-CCCceeECCCCCEEEEecCC
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFID--GLPG-LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~--~~~g-~Pdgi~~d~dG~l~va~~~~ 313 (337)
+||+++.+.+.|..|.++.. .+.. .+.. ...| .|.++.+++.|++.++....
T Consensus 257 FLYasNRg~dsI~~f~V~~~-~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 257 FLYASNRGHDSIAVFSVDPD-GGKL-ELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred EEEEecCCCCeEEEEEEcCC-CCEE-EEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 99999999999999999742 1111 2221 1234 39999999999988887766
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-10 Score=105.72 Aligned_cols=208 Identities=14% Similarity=0.175 Sum_probs=127.8
Q ss_pred eEE-EEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEEcC-CCeEEE
Q psy4771 74 DLY-MGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVNVT-TGQTEQ 146 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd~~-~g~~~~ 146 (337)
.+| +...++.|..|+- ++...+..+ ...+.|..|+++++| .||++... .+|..++.+ ++++..
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~----------~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVV----------DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEE----------ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE
Confidence 467 5566677777764 333333222 223568899999999 68888643 346544443 455544
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCC---------CCCCCCccEEEcCCCc-EEEEcCC
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG---------AKPQIPNSVTVDSDGM-VYWSDSS 211 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~---------~~~~~pn~v~vd~~G~-lyvtd~~ 211 (337)
.... ...+ .|+.++++++|+.+ ..+.+..++...++ .....|++++++++|+ +|+++..
T Consensus 73 ~~~~--~~~~----~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 73 AAES--PLPG----SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred eeee--cCCC----CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC
Confidence 3321 1222 38999999999987 33555555322111 1234688999999986 8888865
Q ss_pred CCccCceeeeeecCCccEEEEcCCC-CeeE------EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKT-KKNK------VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS 284 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~-~~~~------~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~ 284 (337)
.+ .|..||.++ +.+. .-......|++++++|||+++||++...++|.+|+++.. .+..
T Consensus 147 ~~--------------~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~ 211 (330)
T PRK11028 147 ED--------------RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEI 211 (330)
T ss_pred CC--------------EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCE
Confidence 33 555555443 3221 011224578999999999999999999999999999732 1111
Q ss_pred eeee--cCC------CCCCCceeECCCCC-EEEEecC
Q psy4771 285 EVFI--DGL------PGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 285 ~~~~--~~~------~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
+... ... +.+|.+|+++++|+ +||+...
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 1111 111 12345689999997 8888643
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-11 Score=108.47 Aligned_cols=181 Identities=22% Similarity=0.301 Sum_probs=118.0
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-----C------
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-----F------ 132 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-----~------ 132 (337)
..... .++.|++......++..+.+.. +.+.... ......+|+...++++|++|+.+.. .
T Consensus 70 ~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~-------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 70 SGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPE-------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred cceeecCCCeEEEEccccEEEeccCCceeEEecccc-------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 33344 4667775554554555544444 3332211 1245589999999999999999876 1
Q ss_pred c-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcC
Q psy4771 133 G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDS 210 (337)
Q Consensus 133 g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~ 210 (337)
| |+++|+.++ +..+... .+..||+|++++|| .+|++|+
T Consensus 143 G~lyr~~p~g~-~~~l~~~---------------------------------------~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 143 GSLYRVDPDGG-VVRLLDD---------------------------------------DLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ceEEEEcCCCC-EEEeecC---------------------------------------cEEecCceEECCCCCEEEEEeC
Confidence 2 889998544 4444320 25679999999999 5999998
Q ss_pred CCCccCceeeeeecCCccEEEEcCC--CCee----EEEecc--ccceeeEEEccCCCEEEE-EeCCCCEEEEEEeeCCCC
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPK--TKKN----KVLIAN--LHFANGVELSADESFVIV-AETMSSRVHRYYLKGPKQ 281 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~--~~~~----~~~~~~--~~~p~gia~~~dg~~lyv-a~~~~~~I~~~~~~g~~~ 281 (337)
..+ +|++|+.+ ++.+ ..+... -..|.|++++.|| .||+ +.....+|.+|+++|...
T Consensus 183 ~~~--------------~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pdG~l~ 247 (307)
T COG3386 183 PAN--------------RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPDGKLL 247 (307)
T ss_pred CCC--------------eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCCCcEE
Confidence 744 67776543 1211 112222 2579999999999 4884 444456999999986544
Q ss_pred CceeeeecCCC-CCCCceeECCC--CCEEEEecCC
Q psy4771 282 GKSEVFIDGLP-GLPDNVKRDSK--GNFLVSLVCP 313 (337)
Q Consensus 282 ~~~~~~~~~~~-g~Pdgi~~d~d--G~l~va~~~~ 313 (337)
+..+ +| ..|.++++-.. .+|||+....
T Consensus 248 ~~i~-----lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 248 GEIK-----LPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEE-----CCCCCCccceEeCCCcCEEEEEecCC
Confidence 3332 44 56888888764 4599998766
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-11 Score=112.02 Aligned_cols=176 Identities=22% Similarity=0.291 Sum_probs=114.5
Q ss_pred ceeccC-cccCccEEEe-eCCeEEEEe------------cCc-EEEEEeC----CceeEEEecCccccCccccCccCCcc
Q psy4771 55 EKLFEN-EIHGPEAVVK-HKGDLYMGV------------DGG-HILKLSG----GKLVPVVKLGKDCYGFKYEQQCGRPL 115 (337)
Q Consensus 55 ~~~~~g-~~~~P~~i~~-~~g~ly~d~------------~~g-~I~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~P~ 115 (337)
+.++.. .+..|..|++ .+|.||+.. ..+ +|++++. |+......+. .....|+
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---------~~l~~p~ 75 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---------EELSMVT 75 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---------cCCCCcc
Confidence 344433 3568999999 789999543 223 8999864 2222222221 3356799
Q ss_pred eEEECCCCcEEEEECCCcEEEE-EcCC-----CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 116 GIKFDKNGALHVADAYFGLYKV-NVTT-----GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 116 Gl~~d~~G~lyVad~~~gv~~v-d~~~-----g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
||++.++| |||++. ..|+++ |.++ ++.+.+... .... ...
T Consensus 76 Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~---~~~~-----------------------------~~~ 121 (367)
T TIGR02604 76 GLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSG---FGGQ-----------------------------INN 121 (367)
T ss_pred ceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEc---cCCC-----------------------------CCc
Confidence 99999999 999973 568777 4432 133334321 1100 000
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCc----cCcee-eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEE
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKY----KSGLF-EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~----~~~~~-~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva 264 (337)
....++++++++||+|||++..... ..... .......|.+++++|++++.+.+..++.+|+|++++++|+ +|++
T Consensus 122 ~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 122 HHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred ccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEE
Confidence 2456899999999999999885321 00000 0112345899999999999999999999999999999985 8999
Q ss_pred eCCCCEEEEE
Q psy4771 265 ETMSSRVHRY 274 (337)
Q Consensus 265 ~~~~~~I~~~ 274 (337)
|.......++
T Consensus 201 dn~~~~~~~i 210 (367)
T TIGR02604 201 DNDDPPLCRV 210 (367)
T ss_pred ccCCCceeEE
Confidence 9765544443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-10 Score=97.19 Aligned_cols=224 Identities=15% Similarity=0.177 Sum_probs=154.2
Q ss_pred cCceeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEE
Q psy4771 53 NAEKLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVA 128 (337)
Q Consensus 53 ~~~~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVa 128 (337)
++++...|.-..|++|.+ .+|..| +|... .|.|+++. +++++....+ .....-+-..||++|+||++
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~--------~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE--------HADANLETAVFDPWGNLWFT 164 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc--------cCCCcccceeeCCCccEEEe
Confidence 466666676778999999 788888 77776 69999984 3444422221 23344567899999999999
Q ss_pred ECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC--CCCCCCcc-----
Q psy4771 129 DAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG--AKPQIPNS----- 196 (337)
Q Consensus 129 d~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~--~~~~~pn~----- 196 (337)
.. .| --++|+..+.++.+..+ .|. -|.+|.+.+||... ..+-|..++ .+.+ ..+..|++
T Consensus 165 ~q-~G~yGrLdPa~~~i~vfpaP----qG~---gpyGi~atpdGsvwyaslagnaiarid-p~~~~aev~p~P~~~~~gs 235 (353)
T COG4257 165 GQ-IGAYGRLDPARNVISVFPAP----QGG---GPYGICATPDGSVWYASLAGNAIARID-PFAGHAEVVPQPNALKAGS 235 (353)
T ss_pred ec-cccceecCcccCceeeeccC----CCC---CCcceEECCCCcEEEEeccccceEEcc-cccCCcceecCCCcccccc
Confidence 64 34 44899988888777642 343 49999999999987 223444333 2222 12334454
Q ss_pred --EEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE--EeccccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 197 --VTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV--LIANLHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 197 --v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~--~~~~~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
+-.|+.|++|+|++. .|++++|||.+.+... +...-..|..+.++..+ ++|.+|...+.|.
T Consensus 236 Rriwsdpig~~wittwg--------------~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g-rVW~sea~agai~ 300 (353)
T COG4257 236 RRIWSDPIGRAWITTWG--------------TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG-RVWLSEADAGAIG 300 (353)
T ss_pred cccccCccCcEEEeccC--------------CceeeEeCcccccceeeeCCCCCCCcceeeeccCC-cEEeeccccCcee
Confidence 667888999999876 4699999998776433 22334578899999777 6999999999999
Q ss_pred EEEeeCCCCCceeeeecCCCCCCCceeECCC-CCEEEEecCC
Q psy4771 273 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK-GNFLVSLVCP 313 (337)
Q Consensus 273 ~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d-G~l~va~~~~ 313 (337)
||+.... +..++-..-+. +.++.++.. |.+|.+....
T Consensus 301 rfdpeta---~ftv~p~pr~n-~gn~ql~gr~ge~W~~e~gv 338 (353)
T COG4257 301 RFDPETA---RFTVLPIPRPN-SGNIQLDGRPGELWFTEAGV 338 (353)
T ss_pred ecCcccc---eEEEecCCCCC-CCceeccCCCCceeecccCc
Confidence 9997532 33444332222 567888876 4699887655
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-11 Score=111.89 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=74.2
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEE-cCC-----CCeeEEEeccc--------cceeeEEEc
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQY-NPK-----TKKNKVLIANL--------HFANGVELS 255 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~-d~~-----~~~~~~~~~~~--------~~p~gia~~ 255 (337)
.+..|+++++.++| |||++.. .|+++ |.+ +++.+++..++ ..+++++++
T Consensus 70 ~l~~p~Gi~~~~~G-lyV~~~~----------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g 132 (367)
T TIGR02604 70 ELSMVTGLAVAVGG-VYVATPP----------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG 132 (367)
T ss_pred CCCCccceeEecCC-EEEeCCC----------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC
Confidence 36679999999999 9999764 45555 221 12334444433 458899999
Q ss_pred cCCCEEEEEeCCC-------------------CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 256 ADESFVIVAETMS-------------------SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 256 ~dg~~lyva~~~~-------------------~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+|| .||++.... ++|+||++++. ..++++.++.. |.|+++|++|++|++....
T Consensus 133 pDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 133 PDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHGFQN-PYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCC-CEEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecCcCC-CccceECCCCCEEEEccCC
Confidence 999 599987731 57999998764 35777776544 9999999999999998744
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-10 Score=105.54 Aligned_cols=184 Identities=19% Similarity=0.200 Sum_probs=129.7
Q ss_pred cCccEEEe--eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC---CcEE
Q psy4771 63 HGPEAVVK--HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY---FGLY 135 (337)
Q Consensus 63 ~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~---~gv~ 135 (337)
+.|.++++ .+..+| ++..++.|..++.......... .....|.+++++++| .+||++.. +.+.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~----------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI----------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe----------eeccCCceEEECCCCCEEEEEecccCCceEE
Confidence 78999998 456699 6666788999984222111111 122379999999998 99999984 2389
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCc
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKY 214 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~ 214 (337)
.+|..++++..... . ...|.+++++++|. +|+++...
T Consensus 144 vid~~t~~~~~~~~-----v-----------------------------------G~~P~~~a~~p~g~~vyv~~~~~-- 181 (381)
T COG3391 144 VIDAATNKVTATIP-----V-----------------------------------GNTPTGVAVDPDGNKVYVTNSDD-- 181 (381)
T ss_pred EEeCCCCeEEEEEe-----c-----------------------------------CCCcceEEECCCCCeEEEEecCC--
Confidence 99998877665532 1 12468999999997 99999553
Q ss_pred cCceeeeeecCCccEEEEcCCCCeeEE-----EeccccceeeEEEccCCCEEEEEeCCC--CEEEEEEeeCCCCCceeee
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKNKV-----LIANLHFANGVELSADESFVIVAETMS--SRVHRYYLKGPKQGKSEVF 287 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~~~-----~~~~~~~p~gia~~~dg~~lyva~~~~--~~I~~~~~~g~~~~~~~~~ 287 (337)
++|..+|.++..+.. ...-...|.++++++||+.+||++..+ +++.+++...........-
T Consensus 182 ------------~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 182 ------------NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred ------------CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 378888876555442 234467899999999999999999988 6899988754322222112
Q ss_pred ecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 288 IDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 288 ~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
.+ .. .|.+++++++|. +||+...
T Consensus 250 ~~-~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 250 VG-SG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred cc-cC-CCCceeECCCCCEEEEEecC
Confidence 22 22 589999999997 6776444
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-08 Score=89.24 Aligned_cols=185 Identities=18% Similarity=0.258 Sum_probs=124.8
Q ss_pred CccCCcceEEECCCC-cEEEEECC--C-c--EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----ccc
Q psy4771 109 QQCGRPLGIKFDKNG-ALHVADAY--F-G--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTE 177 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G-~lyVad~~--~-g--v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~ 177 (337)
...+.|.=|++++++ +||++... . + .++||+++|+++.+... ...|. -|+.+++|.+|+++ ..+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--~~~g~---~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--TLPGS---PPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--ccCCC---CCeEEEECCCCCEEEEEEccCc
Confidence 345679999999998 89998643 2 3 67888888988888653 44555 37999999999997 223
Q ss_pred ceeeeccccCCC-------------------CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC
Q psy4771 178 QLISMDTEIDGA-------------------KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK 237 (337)
Q Consensus 178 ~v~~~~~~~~~~-------------------~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~ 237 (337)
.|.++..+.++. .-.+++...++|+|+ |+++|-+.+ +|+.|+.+.|
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D--------------ri~~y~~~dg 177 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD--------------RIFLYDLDDG 177 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc--------------eEEEEEcccC
Confidence 443333222221 122367788899996 888888765 6666666566
Q ss_pred eeEEE----eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC--CCCceeeeecCCC----C--CCCceeECCCCC
Q psy4771 238 KNKVL----IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--KQGKSEVFIDGLP----G--LPDNVKRDSKGN 305 (337)
Q Consensus 238 ~~~~~----~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--~~~~~~~~~~~~~----g--~Pdgi~~d~dG~ 305 (337)
..+.. +.....|+=|+|.|+++..|+...-+++|.++..++. +....+... .+| | .-..|.+++||+
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-cCccccCCCCceeEEEECCCCC
Confidence 54322 2445678999999999999999999999999999763 222222221 122 1 134588999999
Q ss_pred EEEEecCC
Q psy4771 306 FLVSLVCP 313 (337)
Q Consensus 306 l~va~~~~ 313 (337)
+..++..+
T Consensus 257 FLYasNRg 264 (346)
T COG2706 257 FLYASNRG 264 (346)
T ss_pred EEEEecCC
Confidence 44444443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-08 Score=95.50 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=128.9
Q ss_pred CccEEEe--eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEE
Q psy4771 64 GPEAVVK--HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVN 138 (337)
Q Consensus 64 ~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd 138 (337)
.|.++++ .+..+| +......+..++.. ...+..+. ......|.|+++++.| ++||++.. +.|..+|
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~--------~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSL--------SVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeec--------cCCCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 6778887 344777 55555556665543 22121111 0112679999999998 69999865 4588888
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCCCccCc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYKSG 217 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~~~~~~ 217 (337)
.++.++..... ....|.+++++++| .+|+++...
T Consensus 103 ~~~~~~~~~~~----------------------------------------vG~~P~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 103 TATNTVLGSIP----------------------------------------VGLGPVGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred CcccceeeEee----------------------------------------eccCCceEEECCCCCEEEEEeccc-----
Confidence 55444433332 12369999999988 599999852
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc-e-eeeecCCCCCC
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK-S-EVFIDGLPGLP 295 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~-~-~~~~~~~~g~P 295 (337)
.++.+..+|..+++..........|.+++++|+|+.+||++...++|..++.++..... . ..... ....|
T Consensus 138 -------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P 209 (381)
T COG3391 138 -------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGP 209 (381)
T ss_pred -------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCC
Confidence 23589999988887654443344689999999999999999999999999976543221 0 00111 22359
Q ss_pred CceeECCCCC-EEEEecCC
Q psy4771 296 DNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~-l~va~~~~ 313 (337)
.+++++++|+ +||+....
T Consensus 210 ~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 210 AGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred ceEEECCCCCEEEEEeccC
Confidence 9999999998 99998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-08 Score=87.11 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=124.8
Q ss_pred CccEEEe-e-CCeEEE-EecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-c-EEEEE
Q psy4771 64 GPEAVVK-H-KGDLYM-GVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-G-LYKVN 138 (337)
Q Consensus 64 ~P~~i~~-~-~g~ly~-d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-g-v~~vd 138 (337)
.|..+++ . ++.+|+ ...+++|..|+..+...+..+ .....|.+++++++|.++++.... . +..+|
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~----------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI----------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe----------eCCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 4666666 3 456774 455788888887443333222 112347899999999766654333 2 55678
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccC-----------CC--CCCCCccEEEc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEID-----------GA--KPQIPNSVTVD 200 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~-----------~~--~~~~pn~v~vd 200 (337)
.++++...... .+. .|..++++++|+.+ ..+.+..++..-. +. ....|.+++++
T Consensus 144 ~~~~~~~~~~~-----~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 144 TKTYEIVDNVL-----VDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred CCCCeEEEEEE-----cCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 77665543221 111 36778889999866 1334444442110 00 11235678899
Q ss_pred CCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 201 SDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 201 ~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
++|+ +|++... .+++..+|.++++..........+.+++++|+|+.||+++...+.|.++++++.
T Consensus 216 ~dg~~~~~~~~~--------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 216 KDGKTAFVALGP--------------ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCCCEEEEEcCC--------------CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 9987 5665543 236788888777654433334568899999999999998877889999998754
Q ss_pred CCCceeeeecCCCCCCCceeEC
Q psy4771 280 KQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 280 ~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
+. ...+. ..+.|.+|++.
T Consensus 282 ~~--~~~~~--~~~~~~~~~~~ 299 (300)
T TIGR03866 282 KV--IKSIK--VGRLPWGVVVR 299 (300)
T ss_pred cE--EEEEE--cccccceeEeC
Confidence 32 12222 23458999875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-07 Score=85.64 Aligned_cols=207 Identities=19% Similarity=0.196 Sum_probs=125.0
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCC-cEEEEEcCCCeEEEEecc
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~-gv~~vd~~~g~~~~l~~~ 150 (337)
.+| +...++.|..|+..+...+..+ .....|.+++++++|+ +|++.... .|+.+|.++++......
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~----------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTF----------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEE----------ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-
Confidence 345 7778889999986332222222 1124478999999985 67776544 48888988776544322
Q ss_pred ccccCCCCCCCCCceeeCCCCCcc----c-ccceeeeccccCC-----CCCCCCccEEEcCCCcEEEEcCCCCccCceee
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTG----Q-TEQLISMDTEIDG-----AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~----~-~~~v~~~~~~~~~-----~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~ 220 (337)
.+. .|..++++++|+.+ . ++.+..++..... .....+++++++++|.++++.....
T Consensus 71 ----~~~---~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------- 136 (300)
T TIGR03866 71 ----SGP---DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------- 136 (300)
T ss_pred ----CCC---CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC-------
Confidence 111 25678899999865 2 2345444422110 0123478999999998655443211
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee-cC---CCCCCC
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI-DG---LPGLPD 296 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~-~~---~~g~Pd 296 (337)
..++.+|..+++..........|..+++++|++.||++....++|..+++...+....-.+. .. ....|.
T Consensus 137 ------~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 137 ------NMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred ------CeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 13555676666543322223467889999999999888766789999998643221111111 00 112367
Q ss_pred ceeECCCCC-EEEEec
Q psy4771 297 NVKRDSKGN-FLVSLV 311 (337)
Q Consensus 297 gi~~d~dG~-l~va~~ 311 (337)
+++++++|+ +|++..
T Consensus 211 ~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 211 GIKLTKDGKTAFVALG 226 (300)
T ss_pred ceEECCCCCEEEEEcC
Confidence 899999998 477654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=104.30 Aligned_cols=182 Identities=15% Similarity=0.228 Sum_probs=126.1
Q ss_pred ccEEEe--eCCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEE
Q psy4771 65 PEAVVK--HKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKV 137 (337)
Q Consensus 65 P~~i~~--~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~v 137 (337)
|.+|.+ .+..+| +|+....|-|-+.+ +.+++. ...+..|.||++|--+ ++|.+|+... |-..
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~-----------n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV-----------NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceee-----------cccCCCccceeeeeccceeeeeccccchhhee
Confidence 455555 356665 99999988887642 333332 2557889999999887 9999997643 3333
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~ 216 (337)
..++.+.+.|... .+-.|.+|++|+ .|+||+||+...
T Consensus 1096 ~LdG~~rkvLf~t---------------------------------------dLVNPR~iv~D~~rgnLYwtDWnRe--- 1133 (1289)
T KOG1214|consen 1096 LLDGSERKVLFYT---------------------------------------DLVNPRAIVVDPIRGNLYWTDWNRE--- 1133 (1289)
T ss_pred ecCCceeeEEEee---------------------------------------cccCcceEEeecccCceeecccccc---
Confidence 3345555555431 356689999998 678999999853
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
+-.|-+.+.++...++ +.+.+..|||+.|+|.-+.|-++|.+.+|+.....+|. +.+.+ ..+|. +|
T Consensus 1134 ---------nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i-~~~Lq-YP 1200 (1289)
T KOG1214|consen 1134 ---------NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVI-QNNLQ-YP 1200 (1289)
T ss_pred ---------CCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhh-hhccc-Cc
Confidence 1244444444333333 34678899999999999999999999999999988764 33333 34453 69
Q ss_pred CceeECCCCCEEEEecCC
Q psy4771 296 DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~ 313 (337)
.+|.-+.+- +|-+.|..
T Consensus 1201 F~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1201 FSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred eeeeecccc-ceeecccc
Confidence 999988775 77666655
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-08 Score=88.68 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=43.8
Q ss_pred ccEEEEcCCCCeeEEEeccccceeeEEEccCCC-EEEEEeCCCCEEEEEEeeCC
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADES-FVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~-~lyva~~~~~~I~~~~~~g~ 279 (337)
+.|+.+|.++++...-..-...|.+|++++||+ .||+++..++.|.++|....
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 468888888877655555567899999999999 99999999999999997643
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-08 Score=91.89 Aligned_cols=241 Identities=19% Similarity=0.247 Sum_probs=134.1
Q ss_pred cCccEEEe-eCCeEEEEecCcEEEEEeC-Cce-eEEEecCccccCccccCccCCcceEEECCC----CcEEEEECC----
Q psy4771 63 HGPEAVVK-HKGDLYMGVDGGHILKLSG-GKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKN----GALHVADAY---- 131 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly~d~~~g~I~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G~lyVad~~---- 131 (337)
..|.+|++ .+|.+|+....|+|++++. +.. ..+....+-. ........|++++++ +.|||+-+.
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~-----~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVF-----ADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTB-----TSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceeccccccc-----ccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 46899999 6889998888999999984 444 3333322110 122345789999995 799998652
Q ss_pred -----CcEEEEEcCCC--e---EEEEeccccccCCCCCCCCCceeeCCCCCcc-----------------cccceeeecc
Q psy4771 132 -----FGLYKVNVTTG--Q---TEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----------------QTEQLISMDT 184 (337)
Q Consensus 132 -----~gv~~vd~~~g--~---~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----------------~~~~v~~~~~ 184 (337)
..|.++..+.+ . .+.+......... ....-..|++++||+++ ..+.|..++.
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~-~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSS-GNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CS-SSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCC-CCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc
Confidence 13666654433 1 2223221111001 01123459999999887 1135555542
Q ss_pred ccC------------------CCCCCCCccEEEcCC-CcEEEEcCCCCccCceeeee-------------ecCCccEEEE
Q psy4771 185 EID------------------GAKPQIPNSVTVDSD-GMVYWSDSSTKYKSGLFEGL-------------TSGSGRLIQY 232 (337)
Q Consensus 185 ~~~------------------~~~~~~pn~v~vd~~-G~lyvtd~~~~~~~~~~~~~-------------~~~~G~v~~~ 232 (337)
... ...+..|.++++|+. |+||++|.+....+-+..+. ....|. .+
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~--~~ 233 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP--PI 233 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS---E
T ss_pred cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC--cc
Confidence 211 013567889999998 99999998754211111110 000010 00
Q ss_pred c--CCC-C--eeEEEeccccceeeEEEccCC------CEEEEEeCCCCEEEEEEeeC-CCCCceeeeecCCCCCCCceeE
Q psy4771 233 N--PKT-K--KNKVLIANLHFANGVELSADE------SFVIVAETMSSRVHRYYLKG-PKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 233 d--~~~-~--~~~~~~~~~~~p~gia~~~dg------~~lyva~~~~~~I~~~~~~g-~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
. ... . ........-..|.|+++-... ..+++++...++|+++.++. ......+.+.....+.|.+|++
T Consensus 234 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp CTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred ccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 0 000 0 001112223468888887432 25999999999999999973 3344556666555557899999
Q ss_pred CCCCCEEEEec
Q psy4771 301 DSKGNFLVSLV 311 (337)
Q Consensus 301 d~dG~l~va~~ 311 (337)
++||.|||+..
T Consensus 314 ~pDG~Lyv~~d 324 (331)
T PF07995_consen 314 GPDGALYVSDD 324 (331)
T ss_dssp ETTSEEEEEE-
T ss_pred cCCCeEEEEEC
Confidence 99999999986
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=96.85 Aligned_cols=211 Identities=17% Similarity=0.285 Sum_probs=126.9
Q ss_pred ccCccEEEe-eCCeEEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC-cEEEE
Q psy4771 62 IHGPEAVVK-HKGDLYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF-GLYKV 137 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-gv~~v 137 (337)
++.|..++. .||.||++.-|- |-|+.+ |.+.++.+++.. ...+-.-||++| +|.|||+|..+ .|+++
T Consensus 364 L~aPvala~a~DGSl~VGDfNy-IRRI~~dg~v~tIl~L~~t--------~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv 434 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDFNY-IRRISQDGQVSTILTLGLT--------DTSHSYYIAVSPVDGTLYVSDPLSKQVWRV 434 (1899)
T ss_pred eeceeeEEEcCCCcEEEccchh-eeeecCCCceEEEEEecCC--------CccceeEEEecCcCceEEecCCCcceEEEe
Confidence 678999998 899999876554 888877 777778777531 123345799998 47999999764 58888
Q ss_pred EcCCC-----eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCC
Q psy4771 138 NVTTG-----QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST 212 (337)
Q Consensus 138 d~~~g-----~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~ 212 (337)
..-.+ ....++.....+ +|-.=+ ..++.. ...+.+.+|.||++|.+|.+||+|...
T Consensus 435 ~sl~~~d~~~N~evvaG~Ge~C------lp~des-------CGDGal------A~dA~L~~PkGIa~dk~g~lYfaD~t~ 495 (1899)
T KOG4659|consen 435 SSLEPQDSRNNYEVVAGDGEVC------LPADES-------CGDGAL------AQDAQLIFPKGIAFDKMGNLYFADGTR 495 (1899)
T ss_pred ccCCccccccCeeEEeccCcCc------cccccc-------cCcchh------cccceeccCCceeEccCCcEEEecccE
Confidence 43211 122232211000 000000 011111 122368899999999999999999872
Q ss_pred CccCceeeeeecCCccEEEEc---CCCC-------eeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYN---PKTK-------KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG 282 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d---~~~~-------~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~ 282 (337)
- .+.+.+|-|-.+- +.+. .+....-.+.+|..+|++|=.+.|||-| .|-|++++....
T Consensus 496 I-------R~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~r--- 563 (1899)
T KOG4659|consen 496 I-------RVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHR--- 563 (1899)
T ss_pred E-------EEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCcc---
Confidence 1 1122222221111 1100 0111111367999999999666899999 568888876532
Q ss_pred ceeeeec-----CCCC---------------CCCceeECCCCCEEEEecCC
Q psy4771 283 KSEVFID-----GLPG---------------LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 283 ~~~~~~~-----~~~g---------------~Pdgi~~d~dG~l~va~~~~ 313 (337)
..+... .+++ .+..|++..+|-+||+....
T Consensus 564 -V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~ 613 (1899)
T KOG4659|consen 564 -VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG 613 (1899)
T ss_pred -EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc
Confidence 111110 0111 37899999999999999877
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=86.52 Aligned_cols=152 Identities=24% Similarity=0.277 Sum_probs=98.2
Q ss_pred cceEEECCCCcEEEEECCC-------------cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCccccccee
Q psy4771 114 PLGIKFDKNGALHVADAYF-------------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLI 180 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~-------------gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~ 180 (337)
..++.+|+.|+|||.|++. .|+.+|.+++++...... |..++.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~-----------p~~~~~------------- 58 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPF-----------PPDIAP------------- 58 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE-------------CCCS--------------
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEEC-----------ChHHcc-------------
Confidence 4689999999999999752 389999998876555431 222211
Q ss_pred eeccccCCCCCCCCccEEEcC-C-----CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc--------
Q psy4771 181 SMDTEIDGAKPQIPNSVTVDS-D-----GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-------- 246 (337)
Q Consensus 181 ~~~~~~~~~~~~~pn~v~vd~-~-----G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-------- 246 (337)
+-...|+++||. + +.+|+||.+.. .|.+||..+++..++..+.
T Consensus 59 ---------~~s~lndl~VD~~~~~~~~~~aYItD~~~~--------------glIV~dl~~~~s~Rv~~~~~~~~p~~~ 115 (287)
T PF03022_consen 59 ---------PDSFLNDLVVDVRDGNCDDGFAYITDSGGP--------------GLIVYDLATGKSWRVLHNSFSPDPDAG 115 (287)
T ss_dssp ---------TCGGEEEEEEECTTTTS-SEEEEEEETTTC--------------EEEEEETTTTEEEEEETCGCTTS-SSE
T ss_pred ---------cccccceEEEEccCCCCcceEEEEeCCCcC--------------cEEEEEccCCcEEEEecCCcceecccc
Confidence 345689999997 2 46999998743 5666666666554443221
Q ss_pred ------------cceeeEEEcc---CCCEEEEEeCCCCEEEEEEee---CCCCCc-------eeeeecCCCCCCCceeEC
Q psy4771 247 ------------HFANGVELSA---DESFVIVAETMSSRVHRYYLK---GPKQGK-------SEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 247 ------------~~p~gia~~~---dg~~lyva~~~~~~I~~~~~~---g~~~~~-------~~~~~~~~~g~Pdgi~~d 301 (337)
....|+++++ ||+.||+.-..+.+++++..+ ...... .+.+.+ .++..+|+++|
T Consensus 116 ~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D 194 (287)
T PF03022_consen 116 PFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAID 194 (287)
T ss_dssp EEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEE
T ss_pred ceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEEEC
Confidence 1256788876 889999999999999998874 221111 122222 22346999999
Q ss_pred CCCCEEEEecCC
Q psy4771 302 SKGNFLVSLVCP 313 (337)
Q Consensus 302 ~dG~l~va~~~~ 313 (337)
++|++|.+....
T Consensus 195 ~~G~ly~~~~~~ 206 (287)
T PF03022_consen 195 PNGNLYFTDVEQ 206 (287)
T ss_dssp TTTEEEEEECCC
T ss_pred CCCcEEEecCCC
Confidence 999999999776
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.6e-07 Score=78.49 Aligned_cols=195 Identities=16% Similarity=0.203 Sum_probs=102.4
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEE
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYK 136 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~ 136 (337)
...+.+|++ +++.|| +....+.|+.++. |++.....+ ...+.+.||++-.+|.+++++... .++.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l----------~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL----------DGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-----------SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC----------CCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 335667777 368899 7888899999987 454332223 234679999999888888887544 4666
Q ss_pred EEc--CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCCC
Q psy4771 137 VNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTK 213 (337)
Q Consensus 137 vd~--~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~~ 213 (337)
++. .+..+..-....-.. + +....=....|++.|+.+ ++|++.-..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l-~-----------------------------~~~~~N~G~EGla~D~~~~~L~v~kE~~- 139 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISL-G-----------------------------FPNKGNKGFEGLAYDPKTNRLFVAKERK- 139 (248)
T ss_dssp EEE----TT--EEEEEEEE---------------------------------S---SS--EEEEEETTTTEEEEEEESS-
T ss_pred EEEeccccccchhhceEEec-c-----------------------------cccCCCcceEEEEEcCCCCEEEEEeCCC-
Confidence 654 332221110000000 0 000011236799999964 587764321
Q ss_pred ccCceeeeeecCCccEEEEcC--CCCeeEEEe--------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNP--KTKKNKVLI--------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~--~~~~~~~~~--------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
..+|+.++. ......... ..+.-+.+++++|..++||+....+.+|..++.+|.-.+.
T Consensus 140 ------------P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~ 207 (248)
T PF06977_consen 140 ------------PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS 207 (248)
T ss_dssp ------------SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE
T ss_pred ------------ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE
Confidence 124555543 111111111 1244689999999988999999999999999976642111
Q ss_pred eeeeecCCC------CCCCceeECCCCCEEEEe
Q psy4771 284 SEVFIDGLP------GLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 284 ~~~~~~~~~------g~Pdgi~~d~dG~l~va~ 310 (337)
.. +..+.. ..|.||++|++|++||+.
T Consensus 208 ~~-L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 208 LS-LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EE--STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EE-eCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 11 111111 248999999999999997
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-06 Score=77.77 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=103.7
Q ss_pred ccEEEeeCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCe
Q psy4771 65 PEAVVKHKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 65 P~~i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~ 143 (337)
-|+|++-++.|| ..-.++..+++|....+.+..+.. .+.-+||+.|.+ +||++|....++.+||++-+
T Consensus 92 gEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y----------~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 92 GEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY----------PGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-----------SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-S
T ss_pred ceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec----------CCcceEEEcCCC-EEEEECCccceEEECCcccc
Confidence 478888788999 899999999999876665544421 245679997644 89999987889999998765
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
....+.. ...| .+....|-+..- +|.||.--+.++
T Consensus 161 ~~~~i~V--~~~g--------------------------------~pv~~LNELE~i-~G~IyANVW~td---------- 195 (264)
T PF05096_consen 161 EVRTIQV--TDNG--------------------------------RPVSNLNELEYI-NGKIYANVWQTD---------- 195 (264)
T ss_dssp EEEEEE---EETT--------------------------------EE---EEEEEEE-TTEEEEEETTSS----------
T ss_pred eEEEEEE--EECC--------------------------------EECCCcEeEEEE-cCEEEEEeCCCC----------
Confidence 5443331 1122 256677888775 688997776644
Q ss_pred cCCccEEEEcCCCCeeEEEecc----------------ccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIAN----------------LHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~----------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|.++||.+|++....+- ...-||||.+++.+++||+--.=.+++++.+.
T Consensus 196 ----~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 196 ----RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp ----EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred ----eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 899999999998765421 23579999999999999998665677777764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-07 Score=87.19 Aligned_cols=175 Identities=20% Similarity=0.261 Sum_probs=106.1
Q ss_pred CeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCC-cceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 73 GDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGR-PLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 73 g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+++| +...+|++..+|..+.+.+.++ +..+. +.++++.+|| .+||+.....|..+|+.++++..-+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i----------~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~ 75 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARI----------PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK 75 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEE----------E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEE----------cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence 3455 6777899999998554444333 22233 4568899999 69999754459999998887544432
Q ss_pred cccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCcc
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
....|.++++++||+ +|+++.. .+.
T Consensus 76 ----------------------------------------~G~~~~~i~~s~DG~~~~v~n~~--------------~~~ 101 (369)
T PF02239_consen 76 ----------------------------------------VGGNPRGIAVSPDGKYVYVANYE--------------PGT 101 (369)
T ss_dssp -----------------------------------------SSEEEEEEE--TTTEEEEEEEE--------------TTE
T ss_pred ----------------------------------------cCCCcceEEEcCCCCEEEEEecC--------------CCc
Confidence 123489999999997 7777643 347
Q ss_pred EEEEcCCCCeeEEEeccc--------cceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 229 LIQYNPKTKKNKVLIANL--------HFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 229 v~~~d~~~~~~~~~~~~~--------~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
+..+|.++.+........ ....+|..++.+...+++-...++|+.++.+....-.. ...+ ..-+|.+..+
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i~-~g~~~~D~~~ 179 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTIK-VGRFPHDGGF 179 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEEE---TTEEEEEE
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eeec-cccccccccc
Confidence 888887776543322211 23457777888877777878889999999765421111 1222 2346889999
Q ss_pred CCCCCE-EEEecCC
Q psy4771 301 DSKGNF-LVSLVCP 313 (337)
Q Consensus 301 d~dG~l-~va~~~~ 313 (337)
|++|++ ++|....
T Consensus 180 dpdgry~~va~~~s 193 (369)
T PF02239_consen 180 DPDGRYFLVAANGS 193 (369)
T ss_dssp -TTSSEEEEEEGGG
T ss_pred Ccccceeeeccccc
Confidence 999985 5655444
|
... |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=92.14 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=112.6
Q ss_pred eccCcccCccEEEee---CCeEEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC
Q psy4771 57 LFENEIHGPEAVVKH---KGDLYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY 131 (337)
Q Consensus 57 ~~~g~~~~P~~i~~~---~g~ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~ 131 (337)
++...+..||+||++ .+..|+|....+|-.-.. |+.+.+.. ...+-.|.+|.+|+-+ +||.+|+.
T Consensus 1062 i~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf----------~tdLVNPR~iv~D~~rgnLYwtDWn 1131 (1289)
T KOG1214|consen 1062 IVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF----------YTDLVNPRAIVVDPIRGNLYWTDWN 1131 (1289)
T ss_pred eecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE----------eecccCcceEEeecccCceeecccc
Confidence 445567799999992 445559999988866543 33332211 1334679999999975 99999986
Q ss_pred Cc---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEE
Q psy4771 132 FG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYW 207 (337)
Q Consensus 132 ~g---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyv 207 (337)
+. |-+.++++...+.++.. .+..||++.+|+.-+ |-+
T Consensus 1132 RenPkIets~mDG~NrRilin~---------------------------------------DigLPNGLtfdpfs~~LCW 1172 (1289)
T KOG1214|consen 1132 RENPKIETSSMDGENRRILINT---------------------------------------DIGLPNGLTFDPFSKLLCW 1172 (1289)
T ss_pred ccCCcceeeccCCccceEEeec---------------------------------------ccCCCCCceeCcccceeeE
Confidence 42 77888876666666541 356799999999765 778
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
.|.+++ ++--+.+++--.+++..+|.+|-+|.- +++++|.+|+..++|..+++-+.
T Consensus 1173 vDAGt~--------------rleC~~p~g~gRR~i~~~LqYPF~its--y~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1173 VDAGTK--------------RLECTLPDGTGRRVIQNNLQYPFSITS--YADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred EecCCc--------------ceeEecCCCCcchhhhhcccCceeeee--ccccceeeccccCceEEeecccc
Confidence 888765 444444443334567788999999864 55569999999999999988653
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.1e-07 Score=84.60 Aligned_cols=165 Identities=20% Similarity=0.278 Sum_probs=100.9
Q ss_pred ccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 110 QCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
.+..|.+|++.++|++||++.. ..|++++..++....+... |.-+ ..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-----------~~v~---------------------~~ 75 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTL-----------PEIV---------------------ND 75 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-----------Ccee---------------------cc
Confidence 4577999999999999999864 4488998766654443321 1000 00
Q ss_pred CCCCCCccEEEcCC-------CcEEEEcCCCCccCceeeeeecCCccEEEEcCC--CC---eeEEEeccc-----cceee
Q psy4771 189 AKPQIPNSVTVDSD-------GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK--TK---KNKVLIANL-----HFANG 251 (337)
Q Consensus 189 ~~~~~pn~v~vd~~-------G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~--~~---~~~~~~~~~-----~~p~g 251 (337)
.....+.+|+++|+ +.||++-+...- +. ......+|.|+..+ +. ..+.++..+ ++-..
T Consensus 76 ~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~-~~----~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~Ggr 150 (454)
T TIGR03606 76 AQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG-DK----ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGR 150 (454)
T ss_pred CCCCceeeEEECCCccccCCCcEEEEEEeccCC-CC----CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCce
Confidence 02345788888765 358887543210 00 00012356555432 11 122333332 44567
Q ss_pred EEEccCCCEEEEEeCCC--------------------------------CEEEEEEeeCCC--------CCceeeeecCC
Q psy4771 252 VELSADESFVIVAETMS--------------------------------SRVHRYYLKGPK--------QGKSEVFIDGL 291 (337)
Q Consensus 252 ia~~~dg~~lyva~~~~--------------------------------~~I~~~~~~g~~--------~~~~~~~~~~~ 291 (337)
|+++||| .|||+-... +.|+|++.+|.- ....++++-++
T Consensus 151 I~FgPDG-~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~ 229 (454)
T TIGR03606 151 LVFGPDG-KIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH 229 (454)
T ss_pred EEECCCC-cEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec
Confidence 9999999 499965432 268999988641 11246666655
Q ss_pred CCCCCceeECCCCCEEEEecCC
Q psy4771 292 PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 292 ~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-. |.||++|++|.||++.+..
T Consensus 230 RN-p~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 230 RN-PQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred cc-cceeEECCCCCEEEEecCC
Confidence 44 9999999999999999877
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-06 Score=75.60 Aligned_cols=207 Identities=15% Similarity=0.195 Sum_probs=116.3
Q ss_pred EEEe-eCCeEE-EEecC------------cEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC------Cc
Q psy4771 67 AVVK-HKGDLY-MGVDG------------GHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN------GA 124 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~------------g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~------G~ 124 (337)
++.+ ..+.|| .|.+. -+|+.+|. +++.....+.... .......+.+++|.. +.
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~-----~~~~s~lndl~VD~~~~~~~~~~ 79 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDI-----APPDSFLNDLVVDVRDGNCDDGF 79 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCC-----S-TCGGEEEEEEECTTTTS-SEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHH-----cccccccceEEEEccCCCCcceE
Confidence 4555 578888 77553 37888886 4443333343221 122345678888872 57
Q ss_pred EEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC--
Q psy4771 125 LHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-- 201 (337)
Q Consensus 125 lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-- 201 (337)
+|++|.. .+|..+|..+++..++....... .|....+.-.|. .++. .....+++.++
T Consensus 80 aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~------~p~~~~~~i~g~------~~~~--------~dg~~gial~~~~ 139 (287)
T PF03022_consen 80 AYITDSGGPGLIVYDLATGKSWRVLHNSFSP------DPDAGPFTIGGE------SFQW--------PDGIFGIALSPIS 139 (287)
T ss_dssp EEEEETTTCEEEEEETTTTEEEEEETCGCTT------S-SSEEEEETTE------EEEE--------TTSEEEEEE-TTS
T ss_pred EEEeCCCcCcEEEEEccCCcEEEEecCCcce------eccccceeccCc------eEec--------CCCccccccCCCC
Confidence 9999987 46999999999988877531111 122221111111 1111 11256677755
Q ss_pred -CCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC-------------CCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 202 -DGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-------------TKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 202 -~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-------------~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
+|+ ||+.-.++. .+|++..+ ..+++.+........|++++++| .||+++.
T Consensus 140 ~d~r~LYf~~lss~--------------~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G-~ly~~~~ 204 (287)
T PF03022_consen 140 PDGRWLYFHPLSSR--------------KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG-NLYFTDV 204 (287)
T ss_dssp TTS-EEEEEETT-S--------------EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT-EEEEEEC
T ss_pred CCccEEEEEeCCCC--------------cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC-cEEEecC
Confidence 554 998876643 33333311 01122222222467899999988 7999999
Q ss_pred CCCEEEEEEeeCCC-CCceeeeecCC--CCCCCceeECC--CCCEEEEecCC
Q psy4771 267 MSSRVHRYYLKGPK-QGKSEVFIDGL--PGLPDNVKRDS--KGNFLVSLVCP 313 (337)
Q Consensus 267 ~~~~I~~~~~~g~~-~~~~~~~~~~~--~g~Pdgi~~d~--dG~l~va~~~~ 313 (337)
..+.|.+.+.++.. ..+.++++... --+|++++++. +|.||+....-
T Consensus 205 ~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 205 EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
Confidence 99999999987632 12344555422 23699999999 99999988544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-07 Score=83.68 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=96.0
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
.+|.+|++.|+|+|||++....|++++.+ +.. ..+.... ... ...
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~--------------------------------~~~ 47 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVF--------------------------------ADG 47 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTB--------------------------------TST
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-ccc--------------------------------ccc
Confidence 46999999999999999974448888844 444 3333210 111 112
Q ss_pred CCCCccEEEcCC----CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCC-----eeEEEec-------cccceeeEEE
Q psy4771 191 PQIPNSVTVDSD----GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK-----KNKVLIA-------NLHFANGVEL 254 (337)
Q Consensus 191 ~~~pn~v~vd~~----G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~-----~~~~~~~-------~~~~p~gia~ 254 (337)
...+.+++++++ +.||++-....... ....-+|.|+....+ ..+.+.. ..+...+|++
T Consensus 48 ~~gllgia~~p~f~~n~~lYv~~t~~~~~~------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~f 121 (331)
T PF07995_consen 48 ERGLLGIAFHPDFASNGYLYVYYTNADEDG------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAF 121 (331)
T ss_dssp TBSEEEEEE-TTCCCC-EEEEEEEEE-TSS------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE
T ss_pred cCCcccceeccccCCCCEEEEEEEcccCCC------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccC
Confidence 446789999984 78998776320000 000114444433322 1122221 2455678999
Q ss_pred ccCCCEEEEEeCC-------------CCEEEEEEeeCCC----------CCceeeeecCCCCCCCceeECCC-CCEEEEe
Q psy4771 255 SADESFVIVAETM-------------SSRVHRYYLKGPK----------QGKSEVFIDGLPGLPDNVKRDSK-GNFLVSL 310 (337)
Q Consensus 255 ~~dg~~lyva~~~-------------~~~I~~~~~~g~~----------~~~~~~~~~~~~g~Pdgi~~d~d-G~l~va~ 310 (337)
+||| .|||+-.. .+.|+|++.+|.- ....++++.++-. |.++++|+. |+||++.
T Consensus 122 gpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d 199 (331)
T PF07995_consen 122 GPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAAD 199 (331)
T ss_dssp -TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEE
T ss_pred CCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEc
Confidence 9999 79998633 3689999987631 1135777776655 899999999 9999999
Q ss_pred cCC
Q psy4771 311 VCP 313 (337)
Q Consensus 311 ~~~ 313 (337)
...
T Consensus 200 ~G~ 202 (331)
T PF07995_consen 200 NGP 202 (331)
T ss_dssp E-S
T ss_pred cCC
Confidence 765
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.7e-06 Score=73.81 Aligned_cols=209 Identities=13% Similarity=0.155 Sum_probs=123.1
Q ss_pred eEEEEecCcEEEEEe--C-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeE------
Q psy4771 74 DLYMGVDGGHILKLS--G-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQT------ 144 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~------ 144 (337)
..++....||++.+. + |..... +..+.+|.||+.+++ +||++. .+.|+++-......
T Consensus 20 la~sTYQagkL~~ig~~~~g~l~~~------------~r~F~r~MGl~~~~~-~l~~~t-~~qiw~f~~~~n~l~~~~~~ 85 (335)
T TIGR03032 20 LAVTTYQAGKLFFIGLQPNGELDVF------------ERTFPRPMGLAVSPQ-SLTLGT-RYQLWRFANVDNLLPAGQTH 85 (335)
T ss_pred EEEEeeecceEEEEEeCCCCcEEEE------------eeccCccceeeeeCC-eEEEEE-cceeEEcccccccccccccC
Confidence 345677777777763 2 333222 255688999999765 799996 46788872111111
Q ss_pred ----EEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCCC--------------CCCCCccEEEcCC
Q psy4771 145 ----EQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDGA--------------KPQIPNSVTVDSD 202 (337)
Q Consensus 145 ----~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~~--------------~~~~pn~v~vd~~ 202 (337)
..+........|. ..-|+|++ .++.++ ....+..++..+.-. .--+.||+|+...
T Consensus 86 ~~~D~~yvPr~~~~TGd--idiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g 162 (335)
T TIGR03032 86 PGYDRLYVPRASYVTGD--IDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDG 162 (335)
T ss_pred CCCCeEEeeeeeeeccC--cchhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCC
Confidence 1111111111221 12345566 344443 223444444332222 1235789999653
Q ss_pred CcEEEEcCCCC-c-cCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC
Q psy4771 203 GMVYWSDSSTK-Y-KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK 280 (337)
Q Consensus 203 G~lyvtd~~~~-~-~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~ 280 (337)
.--|||-.+.. . .+|. ....+|.+. +|-.+++ ++.+++.+|.+-.+. || .||++|++.++|.+++.+
T Consensus 163 ~p~yVTa~~~sD~~~gWR---~~~~~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~--- 231 (335)
T TIGR03032 163 EPRYVTALSQSDVADGWR---EGRRDGGCV-IDIPSGE--VVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQ--- 231 (335)
T ss_pred eEEEEEEeeccCCccccc---ccccCCeEE-EEeCCCC--EEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCC---
Confidence 34888765431 1 0110 112233333 4555564 578999999999986 55 599999999999999975
Q ss_pred CCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 281 QGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 281 ~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
.|+.++.+. +||+|.|+++. |+ ++|++...
T Consensus 232 ~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~ 262 (335)
T TIGR03032 232 AGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKL 262 (335)
T ss_pred CCcEEEEEE-CCCCCccccee--CCEEEEEeccc
Confidence 234666665 89999999998 66 67877655
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=84.17 Aligned_cols=141 Identities=22% Similarity=0.350 Sum_probs=89.4
Q ss_pred cCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-----
Q psy4771 63 HGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG----- 133 (337)
Q Consensus 63 ~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g----- 133 (337)
-.|-+|++ .+|.+| +|..-| ++++++ ++..+.. ..+.++ ...-..+++.++++|.+|++|+...
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l--~~~~~G----~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd 187 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELL--ADEAEG----KPFKFLNDLDIDPEGVVYFTDSSSKYDRRD 187 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceec--cccccC----eeeeecCceeEcCCCeEEEeccccccchhh
Confidence 36999999 456899 888777 999987 3332211 111111 2233467999999999999997421
Q ss_pred -------------EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 134 -------------LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 134 -------------v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
++++|+.+...+.+.. .+.+|||++++
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK~~~VLld----------------------------------------~L~F~NGlaLS 227 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTKVTKVLLD----------------------------------------GLYFPNGLALS 227 (376)
T ss_pred eEEeeecCCCccceEEecCcccchhhhhh----------------------------------------cccccccccCC
Confidence 2222322222222211 58899999999
Q ss_pred CCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC---CCeeEEEeccc-cceeeEEEccCCCEEEEEe
Q psy4771 201 SDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK---TKKNKVLIANL-HFANGVELSADESFVIVAE 265 (337)
Q Consensus 201 ~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~---~~~~~~~~~~~-~~p~gia~~~dg~~lyva~ 265 (337)
+|+. +.+++.... ++.+|-.+ -|+.++.++++ .+|..|..+++| ++||+-
T Consensus 228 ~d~sfvl~~Et~~~--------------ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G-~fWVal 282 (376)
T KOG1520|consen 228 PDGSFVLVAETTTA--------------RIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTG-HFWVAL 282 (376)
T ss_pred CCCCEEEEEeeccc--------------eeeeeEecCCccCchhhHhhcCCCCCcceeECCCC-CEEEEE
Confidence 9987 667776532 45444433 33346666644 589999999999 488776
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.1e-05 Score=66.86 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=110.3
Q ss_pred cEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc---EEEEE
Q psy4771 66 EAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG---LYKVN 138 (337)
Q Consensus 66 ~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g---v~~vd 138 (337)
.++++ +...|| +....-.|+.++. |++.....+ .....|.+|.+-.+|...++|...+ ++.+|
T Consensus 89 S~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----------~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------TGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----------cccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 34444 377899 5555567888876 665332211 3356799999988888888876544 45566
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEcCCCCccCc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSSTKYKSG 217 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd~~~~~~~~ 217 (337)
+++.. ..+....-..... ...=....|+|.|+. +++||+-...-.
T Consensus 159 ~~t~~-~~~~~~~i~L~~~------------------------------~k~N~GfEGlA~d~~~~~l~~aKEr~P~--- 204 (316)
T COG3204 159 ADTTV-ISAKVQKIPLGTT------------------------------NKKNKGFEGLAWDPVDHRLFVAKERNPI--- 204 (316)
T ss_pred CCccE-EeccceEEecccc------------------------------CCCCcCceeeecCCCCceEEEEEccCCc---
Confidence 65432 2222110001000 001234579999985 568887654321
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEe-------cc--ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLI-------AN--LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~-------~~--~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
+||.++........-. .. +.--.|+.+++..++|+|-...++.+..++.+|.-.+. -.+.
T Consensus 205 ----------~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~-lsL~ 273 (316)
T COG3204 205 ----------GIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIEL-LSLT 273 (316)
T ss_pred ----------EEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeee-EEec
Confidence 4444442211111000 00 12346888887777898888888999999988752211 1112
Q ss_pred cC-------CCCCCCceeECCCCCEEEEecC
Q psy4771 289 DG-------LPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 289 ~~-------~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
.+ .| .+.||+.|.+|++|+..-.
T Consensus 274 ~g~~gL~~dip-qaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 274 KGNHGLSSDIP-QAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred cCCCCCcccCC-CcceeEECCCCCEEEEecC
Confidence 22 23 3899999999999998743
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-07 Score=67.28 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=60.6
Q ss_pred ccEEEcCCCcEEEEcCCCCccCce---eeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 195 NSVTVDSDGMVYWSDSSTKYKSGL---FEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~~~~~~~---~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
|||+.-....+|+|........++ ...+.-+.|.|..||+ ++...+++++.+||||++++|++.|||++..++.|
T Consensus 1 NDIvavG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I 78 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHSI 78 (86)
T ss_pred CCEEEECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence 455544444799998764322221 1123446688999997 45778899999999999999999999999999999
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
.+|...
T Consensus 79 ~vy~~~ 84 (86)
T PF01731_consen 79 HVYKRH 84 (86)
T ss_pred EEEEec
Confidence 999864
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-05 Score=77.43 Aligned_cols=181 Identities=12% Similarity=0.211 Sum_probs=107.4
Q ss_pred CceeccCcccCccEEEe-eCCeEEEEec-CcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECCC-------
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLYMGVD-GGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN------- 122 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly~d~~-~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~------- 122 (337)
.+.+++| +..|.+|++ .+|.+|+... .|+|++++.++ ...+..+.... .....+.+.||+++|+
T Consensus 22 ~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~----~~~ge~GLlglal~PdF~~~~~n 96 (454)
T TIGR03606 22 KKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV----NDAQHNGLLGLALHPDFMQEKGN 96 (454)
T ss_pred EEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee----ccCCCCceeeEEECCCccccCCC
Confidence 4556555 779999999 8889997777 69999997632 22222221110 0012466899999876
Q ss_pred CcEEEEECC----------CcEEEEEcCC--Ce---EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 123 GALHVADAY----------FGLYKVNVTT--GQ---TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 123 G~lyVad~~----------~gv~~vd~~~--g~---~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+.|||+-+. ..|.++..+. .. .+.+.. ...
T Consensus 97 ~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~-----------------------------------~lP 141 (454)
T TIGR03606 97 PYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLA-----------------------------------GLP 141 (454)
T ss_pred cEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEe-----------------------------------cCC
Confidence 368998421 2355554321 11 111111 000
Q ss_pred CCCCCCCccEEEcCCCcEEEEcCCCCc--------cCceee----------eeecCCccEEEEcCCCC-----------e
Q psy4771 188 GAKPQIPNSVTVDSDGMVYWSDSSTKY--------KSGLFE----------GLTSGSGRLIQYNPKTK-----------K 238 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~lyvtd~~~~~--------~~~~~~----------~~~~~~G~v~~~d~~~~-----------~ 238 (337)
......-..|++++||.|||+--.... ....+. -.....|.|+|+|+++. .
T Consensus 142 ~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~ 221 (454)
T TIGR03606 142 AGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVV 221 (454)
T ss_pred CCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCc
Confidence 001223467889999999997554311 000000 01235689999998743 1
Q ss_pred eEEEeccccceeeEEEccCCCEEEEEeCCC---CEEEEEE
Q psy4771 239 NKVLIANLHFANGVELSADESFVIVAETMS---SRVHRYY 275 (337)
Q Consensus 239 ~~~~~~~~~~p~gia~~~dg~~lyva~~~~---~~I~~~~ 275 (337)
.++..-++..|.|++++|+| .||++|.+. ..|.++.
T Consensus 222 ~eIyA~G~RNp~Gla~dp~G-~Lw~~e~Gp~~~DEiN~I~ 260 (454)
T TIGR03606 222 SHIFTYGHRNPQGLAFTPDG-TLYASEQGPNSDDELNIIV 260 (454)
T ss_pred ceEEEEeccccceeEECCCC-CEEEEecCCCCCcEEEEec
Confidence 25667789999999999977 599999775 3455544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6e-06 Score=73.15 Aligned_cols=165 Identities=14% Similarity=0.135 Sum_probs=84.4
Q ss_pred eeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeC---Cce---eEEE--ecCccccCccccCccCCcceEEECCCC-c
Q psy4771 56 KLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSG---GKL---VPVV--KLGKDCYGFKYEQQCGRPLGIKFDKNG-A 124 (337)
Q Consensus 56 ~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~---~~~---~~~~--~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~ 124 (337)
++.-.....||+|++ .++.+. ++..+++++.++. .+. ..+. .++.. ...-..-.||++|+.+ +
T Consensus 58 ~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~------~~~N~G~EGla~D~~~~~ 131 (248)
T PF06977_consen 58 RIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP------NKGNKGFEGLAYDPKTNR 131 (248)
T ss_dssp EEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---------SS--EEEEEETTTTE
T ss_pred EEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc------cCCCcceEEEEEcCCCCE
Confidence 333334568999999 666666 6777898988764 111 1111 12211 0111236799999985 8
Q ss_pred EEEEECC--CcEEEEEc--CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 125 LHVADAY--FGLYKVNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 125 lyVad~~--~gv~~vd~--~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
||++... .+|+.++. ........... .... ......-+.+++++
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~--~~~~------------------------------~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQ--DLDD------------------------------DKLFVRDLSGLSYD 179 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-H--HHH-------------------------------HT--SS---EEEEE
T ss_pred EEEEeCCCChhhEEEccccCccceeecccc--cccc------------------------------ccceeccccceEEc
Confidence 9988543 24777765 22222222110 0000 01134558999999
Q ss_pred CC-CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE---Ee-------ccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 201 SD-GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV---LI-------ANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 201 ~~-G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~---~~-------~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
+. |++|+....++ +|..+|.+ |++.. +. ..+..|-|||++++| .|||+.. .|
T Consensus 180 p~t~~lliLS~es~--------------~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvsE-pN 242 (248)
T PF06977_consen 180 PRTGHLLILSDESR--------------LLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVSE-PN 242 (248)
T ss_dssp TTTTEEEEEETTTT--------------EEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TT
T ss_pred CCCCeEEEEECCCC--------------eEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEcC-Cc
Confidence 85 77887765543 66666654 33211 12 235679999999999 5888875 67
Q ss_pred EEEEEE
Q psy4771 270 RVHRYY 275 (337)
Q Consensus 270 ~I~~~~ 275 (337)
..++|.
T Consensus 243 lfy~f~ 248 (248)
T PF06977_consen 243 LFYRFE 248 (248)
T ss_dssp EEEEEE
T ss_pred eEEEeC
Confidence 888874
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-06 Score=82.20 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=63.4
Q ss_pred ccEEEEcCCC-----CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC------CCcee-eeecC-CCC
Q psy4771 227 GRLIQYNPKT-----KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK------QGKSE-VFIDG-LPG 293 (337)
Q Consensus 227 G~v~~~d~~~-----~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~------~~~~~-~~~~~-~~g 293 (337)
++|..+|..+ .++...+.-...|.|++++|||+++|++...++.|.+++++.-+ +.-.. +..+- +.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688888876 34444455667999999999999999999999999999986421 11111 11111 112
Q ss_pred CCCceeECCCCCEEEEecCC
Q psy4771 294 LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 294 ~Pdgi~~d~dG~l~va~~~~ 313 (337)
.|--.++|.+|+.|++++..
T Consensus 376 GPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred CcceEEECCCCCEEEeEeec
Confidence 38889999999999999866
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.2e-05 Score=71.53 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=90.3
Q ss_pred cEEEe-e-CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEEcCC
Q psy4771 66 EAVVK-H-KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~-~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd~~~ 141 (337)
.++.+ . +..+|+...+|.|.++|..+.+.+.++ ..+..|.|+++++|| .+|++... ..+..+|.++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i----------~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI----------KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----------E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----------ecCCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 34455 3 456897778999999998544444332 345679999999999 56777644 4588899887
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
.+....+... ...+. ..-....+|..++....|+....
T Consensus 110 le~v~~I~~~-~~~~~-------------------------------~~~~Rv~aIv~s~~~~~fVv~lk---------- 147 (369)
T PF02239_consen 110 LEPVKTIPTG-GMPVD-------------------------------GPESRVAAIVASPGRPEFVVNLK---------- 147 (369)
T ss_dssp --EEEEEE---EE-TT-------------------------------TS---EEEEEE-SSSSEEEEEET----------
T ss_pred ccceeecccc-ccccc-------------------------------ccCCCceeEEecCCCCEEEEEEc----------
Confidence 6654443210 00000 01122345555555554443322
Q ss_pred eecCCccEEEEcCCCCe--eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 222 LTSGSGRLIQYNPKTKK--NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
..|.|+.+|..+.+ ......-..+|++..+++++++++++....+.|.+++..
T Consensus 148 ---d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 148 ---DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp ---TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ---cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 24578888755432 112333456899999999999999988778888777754
|
... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00026 Score=68.76 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=73.5
Q ss_pred eEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
..++++|| .|+++.... .|+.+|.++++.+.+... .
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~----------------------------------------~ 305 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH----------------------------------------R 305 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC----------------------------------------C
Confidence 57899999 576653332 399999988877665421 1
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC--
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS-- 268 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~-- 268 (337)
......++++||+ |+++.... ....||++|.++++.+.+........+.+++|||+.|+++....
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~------------g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERG------------GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred CCccceEECCCCCEEEEEECCC------------CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence 1234567888886 66654321 12379999988887766543323344578999999998876543
Q ss_pred CEEEEEEeeCC
Q psy4771 269 SRVHRYYLKGP 279 (337)
Q Consensus 269 ~~I~~~~~~g~ 279 (337)
.+|++++++++
T Consensus 374 ~~I~~~dl~~g 384 (448)
T PRK04792 374 FNIARQDLETG 384 (448)
T ss_pred eEEEEEECCCC
Confidence 46778887654
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-06 Score=62.10 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=44.1
Q ss_pred ceEEECCC-CcEEEEEC-----------------CCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCccc
Q psy4771 115 LGIKFDKN-GALHVADA-----------------YFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQ 175 (337)
Q Consensus 115 ~Gl~~d~~-G~lyVad~-----------------~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~ 175 (337)
+++.++++ |.+|++|+ ..| ++++|+.+++.+.+..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-------------------------- 54 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-------------------------- 54 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--------------------------
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--------------------------
Confidence 47899998 89999997 123 9999999999988876
Q ss_pred ccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCC
Q psy4771 176 TEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST 212 (337)
Q Consensus 176 ~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~ 212 (337)
.+.+||||++++|+. +.|++...
T Consensus 55 --------------~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 55 --------------GLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp --------------EESSEEEEEE-TTSSEEEEEEGGG
T ss_pred --------------CCCccCeEEEcCCCCEEEEEeccC
Confidence 477899999999997 88888764
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-05 Score=70.61 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=80.1
Q ss_pred cEEEEECC-----CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEE
Q psy4771 124 ALHVADAY-----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVT 198 (337)
Q Consensus 124 ~lyVad~~-----~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~ 198 (337)
++||.|.. +.|..||.+++++...+. ....|+++
T Consensus 14 ~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~----------------------------------------~G~~P~~~- 52 (352)
T TIGR02658 14 RVYVLDPGHFAATTQVYTIDGEAGRVLGMTD----------------------------------------GGFLPNPV- 52 (352)
T ss_pred EEEEECCcccccCceEEEEECCCCEEEEEEE----------------------------------------ccCCCcee-
Confidence 79999976 359999998877655442 12357886
Q ss_pred EcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--------cccceeeEEEccCCCEEEEEeCC-C
Q psy4771 199 VDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--------NLHFANGVELSADESFVIVAETM-S 268 (337)
Q Consensus 199 vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--------~~~~p~gia~~~dg~~lyva~~~-~ 268 (337)
+++||+ +|++.+.... ..-......|-.+|.++++...-.. ....|+.+++++||++|||++.. .
T Consensus 53 ~spDg~~lyva~~~~~R-----~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSR-----IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS 127 (352)
T ss_pred ECCCCCEEEEEeccccc-----cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC
Confidence 999986 9999984321 0112345689999999887643222 14567799999999999999977 8
Q ss_pred CEEEEEEeeCC
Q psy4771 269 SRVHRYYLKGP 279 (337)
Q Consensus 269 ~~I~~~~~~g~ 279 (337)
+.|.++|+...
T Consensus 128 ~~V~VvD~~~~ 138 (352)
T TIGR02658 128 PAVGVVDLEGK 138 (352)
T ss_pred CEEEEEECCCC
Confidence 99999998653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00032 Score=67.83 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=97.5
Q ss_pred eEEEEec--CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC---CcEEEEEcCCCeEE
Q psy4771 74 DLYMGVD--GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTE 145 (337)
Q Consensus 74 ~ly~d~~--~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~ 145 (337)
.+|++.. +..|+.++. +..+.+..+ .+.-...++.++| .|+++... ..|+.+|.++++.+
T Consensus 216 lay~s~~~g~~~i~~~dl~~g~~~~l~~~------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 216 ITYMSYANGRPRVYLLDLETGQRELVGNF------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred EEEEEecCCCCEEEEEECCCCcEEEeecC------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 3455543 457888886 333333211 1223467899999 56555332 23999999888776
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeec
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~ 224 (337)
.+... . .......+++||+ |+|+....
T Consensus 284 ~Lt~~----~------------------------------------~~~~~~~~spDG~~i~f~s~~~------------ 311 (435)
T PRK05137 284 RLTDS----P------------------------------------AIDTSPSYSPDGSQIVFESDRS------------ 311 (435)
T ss_pred EccCC----C------------------------------------CccCceeEcCCCCEEEEEECCC------------
Confidence 66421 1 1124567888986 66554321
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM--SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~--~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
....||++|.++++.+.+..+...-...+++|||+.|+++... ..+|+.+++++.. ...+... .....+.+.+
T Consensus 312 g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~~--~~~~~p~~sp 386 (435)
T PRK05137 312 GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTSG--FLVEGPTWAP 386 (435)
T ss_pred CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEeccCC--CCCCCCeECC
Confidence 1237899998887776665432233457899999999877643 3578888875432 2333221 2245677888
Q ss_pred CCC
Q psy4771 303 KGN 305 (337)
Q Consensus 303 dG~ 305 (337)
||+
T Consensus 387 DG~ 389 (435)
T PRK05137 387 NGR 389 (435)
T ss_pred CCC
Confidence 887
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-05 Score=65.16 Aligned_cols=152 Identities=15% Similarity=0.240 Sum_probs=90.2
Q ss_pred ccccccCceeccCccc------CccEEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC
Q psy4771 48 NEKLNNAEKLFENEIH------GPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK 121 (337)
Q Consensus 48 ~~~l~~~~~~~~g~~~------~P~~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~ 121 (337)
+++++++..-..|.++ .|..+...++.||+...+|++-.+. ...+-|+||++|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~--------------------~~v~IsNgl~Wd~ 167 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW--------------------NCVGISNGLAWDS 167 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee--------------------hhccCCccccccc
Confidence 5566666655555444 1222222455666655555444431 2235589999998
Q ss_pred CC-cEEEEECCC-cE--EEEEcCCCeEE---EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCC
Q psy4771 122 NG-ALHVADAYF-GL--YKVNVTTGQTE---QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIP 194 (337)
Q Consensus 122 ~G-~lyVad~~~-gv--~~vd~~~g~~~---~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~p 194 (337)
+- ..|+.|+-+ .| +.+|-.+|.+. .+... ... +......|
T Consensus 168 d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl--------------------------------rk~-~~~e~~~P 214 (310)
T KOG4499|consen 168 DAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL--------------------------------RKS-QPFESLEP 214 (310)
T ss_pred cCcEEEEEccCceEEeeeecCCCcccccCcceeEEe--------------------------------ccC-CCcCCCCC
Confidence 86 889998653 46 55556666532 22211 000 01124569
Q ss_pred ccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE-eccccceeeEEEc-cCCCEEEEEeC
Q psy4771 195 NSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-IANLHFANGVELS-ADESFVIVAET 266 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~-~dg~~lyva~~ 266 (337)
.|+++|.+|+|||+..+ .|+|+++||.+|++..- .-....-...||. ++-+.+||+..
T Consensus 215 DGm~ID~eG~L~Va~~n--------------g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFN--------------GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CcceEccCCcEEEEEec--------------CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 99999999999999986 35999999999975321 1123344567775 44446777664
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00033 Score=69.06 Aligned_cols=185 Identities=14% Similarity=0.185 Sum_probs=124.8
Q ss_pred CccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 64 GPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
.-.++++ .||.+. ++..+|+|-.|+....-.+.+|.+ ++ ....++.|...|+..++.+-.| |+..|..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte--------Ht-s~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE--------HT-SGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc--------CC-CceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 3455666 455544 899999999998755445555543 22 3467999999999999976666 8888875
Q ss_pred CC-eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 141 TG-QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 141 ~g-~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
.. ..+++..+ .....+.+++|+.|.|.++-....|
T Consensus 423 RYrNfRTft~P---------------------------------------~p~QfscvavD~sGelV~AG~~d~F----- 458 (893)
T KOG0291|consen 423 RYRNFRTFTSP---------------------------------------EPIQFSCVAVDPSGELVCAGAQDSF----- 458 (893)
T ss_pred ccceeeeecCC---------------------------------------CceeeeEEEEcCCCCEEEeeccceE-----
Confidence 33 34444431 1234578999999998877665443
Q ss_pred eeeecCCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
.|+.++.++|+..-++.|...| .+++++++++ +.++-+..++|...++=+. .++.+.+.- ....-++
T Consensus 459 --------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~i--~sdvl~v 526 (893)
T KOG0291|consen 459 --------EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLEI--RSDVLAV 526 (893)
T ss_pred --------EEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEee--ccceeEE
Confidence 7888888899876666676666 6899999997 6666666788888777433 223343321 1224567
Q ss_pred eECCCCC-EEEEecCC
Q psy4771 299 KRDSKGN-FLVSLVCP 313 (337)
Q Consensus 299 ~~d~dG~-l~va~~~~ 313 (337)
++.+||. +-||...+
T Consensus 527 sfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDG 542 (893)
T ss_pred EEcCCCCeEEEEEecc
Confidence 7777775 77776654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00092 Score=64.60 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=82.7
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...+++++| .|+++.... .|+.+|.++++.+.+...
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~---------------------------------------- 290 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH---------------------------------------- 290 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC----------------------------------------
Confidence 367899999 565553222 399999988877665420
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~- 268 (337)
.......++++||+ |+++..... ...||.+|.++++.+.+..........+++|||+.|+++....
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g------------~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGG------------RPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCC------------CceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC
Confidence 11124568899987 665532211 1268888887777655543333445689999999998875433
Q ss_pred -CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 -SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 -~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
.+|+.++++++. ...+..+ .......+.+||+
T Consensus 359 ~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~ 391 (433)
T PRK04922 359 QYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGS 391 (433)
T ss_pred ceeEEEEECCCCC---eEECCCC--CCCCCceECCCCC
Confidence 468888876432 2333321 1234557788887
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00087 Score=63.59 Aligned_cols=184 Identities=20% Similarity=0.194 Sum_probs=114.9
Q ss_pred CccEEEe--eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCC
Q psy4771 64 GPEAVVK--HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~ 141 (337)
.=..+++ ++..||+...+|+|..|+.+....-..+|+ .....-.+|+.+..+.++.+.....+.+++.++
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~--------~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK--------GHTNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc--------cccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 3344555 356789999999999999865443322222 223446789998889999998767788887654
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~ 220 (337)
+....-.. + .-...|-++++.++|. +.++.-+
T Consensus 394 ~~~t~~~~---------------~-----------------------~lg~QP~~lav~~d~~~avv~~~~--------- 426 (603)
T KOG0318|consen 394 NGYTKSEV---------------V-----------------------KLGSQPKGLAVLSDGGTAVVACIS--------- 426 (603)
T ss_pred Ccccccce---------------e-----------------------ecCCCceeEEEcCCCCEEEEEecC---------
Confidence 32211100 0 0123577999999874 4444433
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
.|..+...++-.+ ..-...+.++|++||++.+-|.-. .+.|+.|.+.|..+.......+ ..+-+.-++.
T Consensus 427 -------~iv~l~~~~~~~~--~~~~y~~s~vAv~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~~~-h~a~iT~vay 495 (603)
T KOG0318|consen 427 -------DIVLLQDQTKVSS--IPIGYESSAVAVSPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKLLE-HRAAITDVAY 495 (603)
T ss_pred -------cEEEEecCCccee--eccccccceEEEcCCCCEEEEecc-cceEEEEEecCCcccceeeeec-ccCCceEEEE
Confidence 2222221122111 222346889999999986666543 4569999999865533333333 4566899999
Q ss_pred CCCCCEEEEecCC
Q psy4771 301 DSKGNFLVSLVCP 313 (337)
Q Consensus 301 d~dG~l~va~~~~ 313 (337)
.+||.++++.-..
T Consensus 496 Spd~~yla~~Da~ 508 (603)
T KOG0318|consen 496 SPDGAYLAAGDAS 508 (603)
T ss_pred CCCCcEEEEeccC
Confidence 9999988887655
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0013 Score=63.46 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=79.3
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...++.+|| .|+++-... .|+.+|.+++..+.+.. ..
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~----------------------------------- 283 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ----SS----------------------------------- 283 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC----CC-----------------------------------
Confidence 467899999 566553332 38889987776555432 00
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~- 268 (337)
.......+++||+ |+++..... .-.||.++..+++.+.+..........+++|||+.|+++....
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~g------------~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRGG------------APQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCCC------------CcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 1123467899997 665532211 1268888877666555442222334578999999987665433
Q ss_pred -CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 -SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 -~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
.+|++++++++. ...+.+. +.....++.+||+
T Consensus 351 ~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~ 383 (427)
T PRK02889 351 AFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGR 383 (427)
T ss_pred cEEEEEEECCCCC---eEEccCC--CCccCceECCCCC
Confidence 468888876532 2223321 1234567777776
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0013 Score=63.42 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=82.7
Q ss_pred eEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
..+++||| .|+++.... .|+.+|.++++.+.+... .
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~----------------------------------------~ 286 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----------------------------------------R 286 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC----------------------------------------C
Confidence 57899999 576653322 499999988877766431 1
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--C
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM--S 268 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~--~ 268 (337)
.......+++||+ |+++..... .-.||++|.++++.+.+..........+++|||+.|+++... .
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~g------------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQAG------------RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCCC------------CceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 1235678899997 554433211 127899998888776654443444568899999998776543 3
Q ss_pred CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
..|+.++++++. .+.+... ..-....+.+||+
T Consensus 355 ~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~ 386 (429)
T PRK03629 355 QHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGT 386 (429)
T ss_pred ceEEEEECCCCC---eEEeCCC--CCCCCceECCCCC
Confidence 468888876542 3333321 1112456677776
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=46.22 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.2
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
|..|.|||++++| .|||+|++++||++|
T Consensus 1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4689999999887 699999999999986
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0022 Score=56.12 Aligned_cols=179 Identities=18% Similarity=0.158 Sum_probs=108.1
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCe
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~ 143 (337)
.+.+ .++ .+++...++.|..|+..+......+. .......++.+.++++++++... ..+..+|..+++
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLT---------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe---------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE
Confidence 5555 344 67777778989888864322222221 11235678999998888887653 447788876554
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
...... + .......+++++++.++++...
T Consensus 127 ~~~~~~------~---------------------------------~~~~i~~~~~~~~~~~l~~~~~------------ 155 (289)
T cd00200 127 CLTTLR------G---------------------------------HTDWVNSVAFSPDGTFVASSSQ------------ 155 (289)
T ss_pred EEEEec------c---------------------------------CCCcEEEEEEcCcCCEEEEEcC------------
Confidence 333221 0 1123678888887765544431
Q ss_pred cCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
+|.|..+|..+++...... .-.....++++++++.++++.. .+.|..+++..... ...+.. .......+++++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~~-~~~~i~~~~~~~ 229 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC--LGTLRG-HENGVNSVAFSP 229 (289)
T ss_pred --CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce--ecchhh-cCCceEEEEEcC
Confidence 3477777776554333222 2235688999999987877776 77899998764211 111111 223467788888
Q ss_pred CCCEEEEec
Q psy4771 303 KGNFLVSLV 311 (337)
Q Consensus 303 dG~l~va~~ 311 (337)
++.++++..
T Consensus 230 ~~~~~~~~~ 238 (289)
T cd00200 230 DGYLLASGS 238 (289)
T ss_pred CCcEEEEEc
Confidence 877777665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0013 Score=63.68 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=74.4
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
-...++.+|| .|+++... ..|+.+|.++|+.+.+.. ..+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~----~~g--------------------------------- 246 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN----FPG--------------------------------- 246 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec----CCC---------------------------------
Confidence 3468889998 45444322 249999998887766542 111
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC-
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM- 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~- 267 (337)
.....++++||+ |+++... +....||.+|.++++.+.+..........+++|||+.|+++...
T Consensus 247 ---~~~~~~~SPDG~~la~~~~~------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 247 ---MTFAPRFSPDGRKVVMSLSQ------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred ---cccCcEECCCCCEEEEEEec------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 124567889996 6555432 11237999998888876665544445568999999988766532
Q ss_pred -CCEEEEEEeeCC
Q psy4771 268 -SSRVHRYYLKGP 279 (337)
Q Consensus 268 -~~~I~~~~~~g~ 279 (337)
...|+++++++.
T Consensus 312 g~~~Iy~~d~~g~ 324 (435)
T PRK05137 312 GSPQLYVMNADGS 324 (435)
T ss_pred CCCeEEEEECCCC
Confidence 357888887654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=63.49 Aligned_cols=134 Identities=14% Similarity=0.199 Sum_probs=82.2
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...++.++| .|+++.... .|+.+|.++++.+.+... .
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~----~----------------------------------- 286 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH----P----------------------------------- 286 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC----C-----------------------------------
Confidence 357899998 565553322 499999988877665421 1
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~- 268 (337)
.......+++||+ |+++.... ....||++|..+++.+.+..........+++|||+.|+++....
T Consensus 287 -~~~~~~~~spDg~~i~f~s~~~------------g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 287 -AIDTEPFWGKDGRTLYFTSDRG------------GKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred -CCcCCeEECCCCCEEEEEECCC------------CCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 1123456888886 76664321 12378889888887665543323334568999999998887543
Q ss_pred -CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 -SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 -~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
..|+.++++++ ..+.+.+. +.-....+.+||+
T Consensus 354 ~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spdg~ 386 (430)
T PRK00178 354 NFHVAAQDLQRG---SVRILTDT--SLDESPSVAPNGT 386 (430)
T ss_pred ceEEEEEECCCC---CEEEccCC--CCCCCceECCCCC
Confidence 36788887653 23333321 1223456778887
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0022 Score=61.64 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=97.1
Q ss_pred EE-EEec--CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC---CcEEEEEcCCCeEE
Q psy4771 75 LY-MGVD--GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTE 145 (337)
Q Consensus 75 ly-~d~~--~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~ 145 (337)
+| ++.. +..|+.++. ++.+.+.... +......+.||| .|+++... ..|+.+|.++++.+
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~------------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIASSQ------------GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT 270 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEecCC------------CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence 55 5554 357888876 3443443211 112235688998 67665433 24999998888777
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeec
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~ 224 (337)
++... .+ .-....++|||+ |||+.....
T Consensus 271 ~LT~~----~~------------------------------------~d~~p~~SPDG~~I~F~Sdr~g----------- 299 (419)
T PRK04043 271 QITNY----PG------------------------------------IDVNGNFVEDDKRIVFVSDRLG----------- 299 (419)
T ss_pred EcccC----CC------------------------------------ccCccEECCCCCEEEEEECCCC-----------
Confidence 66431 11 011235889996 887765421
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC--------CEEEEEEeeCCCCCceeeeecCCCCCCC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS--------SRVHRYYLKGPKQGKSEVFIDGLPGLPD 296 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~--------~~I~~~~~~g~~~~~~~~~~~~~~g~Pd 296 (337)
.-.||++|.++++.+.+...... + .+++|||+.|.++.... ..|+.++++++. .+.+... +.-.
T Consensus 300 -~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~ 371 (419)
T PRK04043 300 -YPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQ 371 (419)
T ss_pred -CceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcC
Confidence 23799999998887655432221 2 48999999886665432 578888886542 2333332 1122
Q ss_pred ceeECCCCC-EEEEe
Q psy4771 297 NVKRDSKGN-FLVSL 310 (337)
Q Consensus 297 gi~~d~dG~-l~va~ 310 (337)
...+.+||+ ++.+.
T Consensus 372 ~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 372 FPRFSSDGGSIMFIK 386 (419)
T ss_pred CeEECCCCCEEEEEE
Confidence 366778886 44443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0029 Score=60.55 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=83.1
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
...+++.++| .|+++... ..|+.++.++++.+.+... .
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~----~---------------------------------- 277 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG----P---------------------------------- 277 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC----C----------------------------------
Confidence 3457899998 57666433 2389999887766655421 0
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
.......+.+||+ |+++.... ....||.+|.++++...+..........++++||+.|+++....
T Consensus 278 --~~~~~~~~s~dg~~l~~~s~~~------------g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 278 --GIDTEPSWSPDGKSIAFTSDRG------------GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred --CCCCCEEECCCCCEEEEEECCC------------CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence 0122446778886 65543321 12378889988777666654555566789999999998887654
Q ss_pred --CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 --SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 --~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
.+|+.+++++. ..+.+.+. ......++.+||+
T Consensus 344 ~~~~i~~~d~~~~---~~~~l~~~--~~~~~p~~spdg~ 377 (417)
T TIGR02800 344 GGFNIAVMDLDGG---GERVLTDT--GLDESPSFAPNGR 377 (417)
T ss_pred CceEEEEEeCCCC---CeEEccCC--CCCCCceECCCCC
Confidence 47788887642 23333321 1234456777776
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0016 Score=59.00 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=104.2
Q ss_pred eCCeEEEE-----ecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCe
Q psy4771 71 HKGDLYMG-----VDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 71 ~~g~ly~d-----~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~ 143 (337)
++..||+. ...|.|-.||.. +.+.+..|. ...-.|+-|.+.+|| .|.|++. || .-.+++|+
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~---------s~GIGPHel~l~pDG~tLvVANG--GI-~Thpd~GR 128 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP---------SHGIGPHELLLMPDGETLVVANG--GI-ETHPDSGR 128 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec---------CCCcChhhEEEcCCCCEEEEEcC--CC-ccCcccCc
Confidence 46678854 334788888874 555554442 223459999999999 9999963 22 12222222
Q ss_pred EEEEeccccccCCCCCCCCCceee-CCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTV-DSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~-~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
.+.=... .-|.-+.+ ..+|.++..-.+- ..-.-.+...++++++|.+++......-..
T Consensus 129 ~kLNl~t---------M~psL~~ld~~sG~ll~q~~Lp------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~------ 187 (305)
T PF07433_consen 129 AKLNLDT---------MQPSLVYLDARSGALLEQVELP------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPG------ 187 (305)
T ss_pred eecChhh---------cCCceEEEecCCCceeeeeecC------ccccccceeeEEecCCCcEEEEEecCCCCC------
Confidence 1111000 01121222 1222222100000 000234578999999999998876432100
Q ss_pred ecCCccEEEEcCCCCeeEEEe-------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI-------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
+..--|..++.. +..+.+. .--.+.-.||++.+++.+.++.-..+++..++.+.+.......+.+ -
T Consensus 188 -~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-----~ 260 (305)
T PF07433_consen 188 -DAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-----A 260 (305)
T ss_pred -ccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-----e
Confidence 000122333321 1121111 1123567899999999999999999999999865432222111111 2
Q ss_pred CceeECCCCCEEEEecCC
Q psy4771 296 DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~ 313 (337)
-|++...+| +.++...+
T Consensus 261 cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 261 CGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred eeeeecCCc-eEEeCCCc
Confidence 356666666 55555555
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0055 Score=53.53 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=104.4
Q ss_pred ccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEEC-CCcEEEEEcCC
Q psy4771 65 PEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA-YFGLYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~-~~gv~~vd~~~ 141 (337)
..++.+ .++.++ ++..++.|..|+..+......+. ........+.+++++.++++.. ...+..+|..+
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 344555 344444 55558888888764322222221 1223467899999887776654 34477788764
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~ 220 (337)
++...... . .-.....+++.++|+ ++++..
T Consensus 167 ~~~~~~~~------~---------------------------------~~~~i~~~~~~~~~~~l~~~~~---------- 197 (289)
T cd00200 167 GKCVATLT------G---------------------------------HTGEVNSVAFSPDGEKLLSSSS---------- 197 (289)
T ss_pred cccceeEe------c---------------------------------CccccceEEECCCcCEEEEecC----------
Confidence 44322221 0 112467888999885 554443
Q ss_pred eeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCcee
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~ 299 (337)
+|.+..+|..+++..... ........+++++++. ++++....+.|..+++.... ....+. ........++
T Consensus 198 -----~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~--~~~~~~-~~~~~i~~~~ 268 (289)
T cd00200 198 -----DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE--CVQTLS-GHTNSVTSLA 268 (289)
T ss_pred -----CCcEEEEECCCCceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCce--eEEEcc-ccCCcEEEEE
Confidence 347777887665543333 2333678899999864 55555557789988876321 112222 2233467889
Q ss_pred ECCCCCEEEEec
Q psy4771 300 RDSKGNFLVSLV 311 (337)
Q Consensus 300 ~d~dG~l~va~~ 311 (337)
++++|+++++..
T Consensus 269 ~~~~~~~l~~~~ 280 (289)
T cd00200 269 WSPDGKRLASGS 280 (289)
T ss_pred ECCCCCEEEEec
Confidence 999987665543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0036 Score=60.48 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=83.3
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
-...+++||| .|.++... ..++.++.++|+.+.+.. ..+
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~----~~~--------------------------------- 243 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----FPR--------------------------------- 243 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----CCC---------------------------------
Confidence 4478999999 45433221 238888888777666543 111
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEE-eCC
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVA-ETM 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva-~~~ 267 (337)
....++++|||+ |+++..... ...||.+|.++++.+.+..+-......+++|||+.|+++ +..
T Consensus 244 ---~~~~~~~SPDG~~La~~~~~~g------------~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 244 ---HNGAPAFSPDGSKLAFALSKTG------------SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred ---CcCCeEECCCCCEEEEEEcCCC------------CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence 123578999996 776543211 126899999888877666554455678999999987554 432
Q ss_pred -CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 -SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 -~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
..+|++++++++. .+.+.. ..+.....++.+||+
T Consensus 309 g~~~Iy~~d~~~g~---~~~lt~-~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 309 GRPQVYKVNINGGA---PQRITW-EGSQNQDADVSSDGK 343 (429)
T ss_pred CCceEEEEECCCCC---eEEeec-CCCCccCEEECCCCC
Confidence 3478888876542 222222 112234566777776
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.004 Score=60.09 Aligned_cols=132 Identities=16% Similarity=0.244 Sum_probs=78.8
Q ss_pred eEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
.+++.||| .|+++.... .|+.+|.++++.+.+... .
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~----------------------------------------~ 291 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG----------------------------------------A 291 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC----------------------------------------C
Confidence 57999999 466553222 388889887776655420 1
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
......++++||+ |+++..... .-.||.++..++..+.+ .... ...+++|||+.|+++.. ..
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g------------~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~--~~ 354 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSG------------SPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING--DN 354 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCC------------CceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC--CC
Confidence 1245678899997 666543211 12788888776655443 2221 34689999999988764 56
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEE
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va 309 (337)
+.++++.++. .+.+.... .-....+.+||+..+.
T Consensus 355 i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 355 VVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIY 388 (429)
T ss_pred EEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEE
Confidence 8888875432 22222211 1235567778864333
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0018 Score=60.89 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCCCCccEEEcCC-CcEEEEcCCCCc---cC------------ceeeee-ecCCccEEEEcCC--CC--eeEEEeccccc
Q psy4771 190 KPQIPNSVTVDSD-GMVYWSDSSTKY---KS------------GLFEGL-TSGSGRLIQYNPK--TK--KNKVLIANLHF 248 (337)
Q Consensus 190 ~~~~pn~v~vd~~-G~lyvtd~~~~~---~~------------~~~~~~-~~~~G~v~~~d~~--~~--~~~~~~~~~~~ 248 (337)
.+..|.++++++. |.||+++...+. .+ |.+... ...+|+... ++. .+ ..........-
T Consensus 237 G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~-~~~~~~~~~~p~~~~~~h~A 315 (399)
T COG2133 237 GHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIP-DGTVVAGAIQPVYTWAPHIA 315 (399)
T ss_pred ccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccC-CCcccccccCCceeeccccc
Confidence 5778899999996 899999998721 11 111110 001111000 000 00 00001112235
Q ss_pred eeeEEEccCC------CEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEecCC
Q psy4771 249 ANGVELSADE------SFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 249 p~gia~~~dg------~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|.||+|.... +.++|+..++..+.+.+.+|...-..+.|.. ...|.|-++++.+||.|+|+...+
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~ 387 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG 387 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence 7899998431 3599999988888887777652112222322 234789999999999999998664
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.002 Score=60.71 Aligned_cols=80 Identities=10% Similarity=0.107 Sum_probs=53.4
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCc----cCce--e-eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKY----KSGL--F-EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~----~~~~--~-~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv 263 (337)
..+-..|++++||+||++--+..- .+.. . .+.......++..|+.+...++...++.+|.|++++|....||+
T Consensus 176 ~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 176 HHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred CcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 456678999999999998765411 0000 0 00111222455556665666677888999999999998557999
Q ss_pred EeCCCCE
Q psy4771 264 AETMSSR 270 (337)
Q Consensus 264 a~~~~~~ 270 (337)
+|.+...
T Consensus 256 ~e~g~d~ 262 (399)
T COG2133 256 TEHGPDA 262 (399)
T ss_pred EecCCCc
Confidence 9988733
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0062 Score=59.17 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=82.9
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++||| .|+++.... .|+.+|.++++.+.+.. ..+
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~----~~g---------------------------------- 262 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS----FPG---------------------------------- 262 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC----CCC----------------------------------
Confidence 467889998 455443222 38999988887665542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
.....++++||+ |+++.... ....||.+|.++++.+.+..........+++|||++|+++...
T Consensus 263 --~~~~~~wSPDG~~La~~~~~~------------g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g 328 (448)
T PRK04792 263 --INGAPRFSPDGKKLALVLSKD------------GQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG 328 (448)
T ss_pred --CcCCeeECCCCCEEEEEEeCC------------CCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC
Confidence 123568899987 76653321 1236999999888877665544455668899999988776532
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++.. ..+..++ ....+.++.+||+
T Consensus 329 ~~~Iy~~dl~~g~~--~~Lt~~g--~~~~~~~~SpDG~ 362 (448)
T PRK04792 329 KPQIYRVNLASGKV--SRLTFEG--EQNLGGSITPDGR 362 (448)
T ss_pred CceEEEEECCCCCE--EEEecCC--CCCcCeeECCCCC
Confidence 35788888765422 1111121 1233457778886
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0087 Score=57.74 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=79.2
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...++.|+| .|+++.... .|+.+|..+|+...+.. ..|
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----~~g---------------------------------- 240 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----FKG---------------------------------- 240 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec----CCC----------------------------------
Confidence 367889998 555543222 38889988887666542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC--C
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET--M 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~--~ 267 (337)
.....++++||+ |+++-... ..-.||.+|.++++.+.+......-...+++|||++|+++.. +
T Consensus 241 --~~~~~~~SPDG~~la~~~~~~------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g 306 (427)
T PRK02889 241 --SNSAPAWSPDGRTLAVALSRD------------GNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG 306 (427)
T ss_pred --CccceEECCCCCEEEEEEccC------------CCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC
Confidence 124678899986 66553321 123788888877776655443333345789999998876543 3
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++.. ..+... .++....++.+||+
T Consensus 307 ~~~Iy~~~~~~g~~--~~lt~~--g~~~~~~~~SpDG~ 340 (427)
T PRK02889 307 APQIYRMPASGGAA--QRVTFT--GSYNTSPRISPDGK 340 (427)
T ss_pred CcEEEEEECCCCce--EEEecC--CCCcCceEECCCCC
Confidence 45677777654321 122111 12233456777776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.012 Score=56.78 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=80.9
Q ss_pred ceEEECCCC-cEEE-EECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHV-ADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyV-ad~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++++| .|++ +... ..|+.++.++|+.+.+.. ..|
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~----~~g---------------------------------- 243 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN----FEG---------------------------------- 243 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC----CCC----------------------------------
Confidence 567889998 5544 4322 248889998887766542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
.....++++||+ |+++.... ....||.+|.++++.+.+..........+++|||+.|+++...
T Consensus 244 --~~~~~~~SpDG~~la~~~~~~------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 244 --LNGAPAWSPDGSKLAFVLSKD------------GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred --CcCCeEECCCCCEEEEEEccC------------CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 123577889986 66554321 1237899999888776655443344567899999988766432
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++. .+.+... .......++++||+
T Consensus 310 ~~~iy~~d~~~g~---~~~lt~~-~~~~~~~~~Spdg~ 343 (430)
T PRK00178 310 KPQIYKVNVNGGR---AERVTFV-GNYNARPRLSADGK 343 (430)
T ss_pred CceEEEEECCCCC---EEEeecC-CCCccceEECCCCC
Confidence 3578888876542 2222111 11223456677775
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.029 Score=54.17 Aligned_cols=165 Identities=9% Similarity=0.089 Sum_probs=90.7
Q ss_pred EEECCCC-c--E-EEEECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---c--cc--ceeee-
Q psy4771 117 IKFDKNG-A--L-HVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---Q--TE--QLISM- 182 (337)
Q Consensus 117 l~~d~~G-~--l-yVad~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~--~~--~v~~~- 182 (337)
-++.||| . + |++... ..|+..+.++|+.+.+.. ..|. ....+.++||+.+ . .+ .+...
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----~~g~----~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----LQGN----QLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec----CCCC----ccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 4888998 3 2 455432 249999999998777764 2221 2235678888766 1 11 22221
Q ss_pred -ccc---------cCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC--CCeeEEEeccccce
Q psy4771 183 -DTE---------IDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK--TKKNKVLIANLHFA 249 (337)
Q Consensus 183 -~~~---------~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~--~~~~~~~~~~~~~p 249 (337)
+.. +...........++++||+ |+++..... .-.||.++.+ +++.+.+.......
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g------------~~~ly~~~~~~~g~~~~~lt~~~~~~ 329 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG------------RPRIYIMQIDPEGQSPRLLTKKYRNS 329 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC------------CceEEEEECcccccceEEeccCCCCc
Confidence 100 0000112234568899997 665543211 1257776653 23333333332334
Q ss_pred eeEEEccCCCEEEEEeCC--CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 250 NGVELSADESFVIVAETM--SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 250 ~gia~~~dg~~lyva~~~--~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...+++|||+.|+++... ..+|+++++++++ .+.+... ++...+....+||+
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~-~~~~~~p~wSpDG~ 383 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTS-PENKESPSWAIDSL 383 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCC-CCCccceEECCCCC
Confidence 567899999988776543 3579999887542 2333322 22345667777776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0057 Score=59.14 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=82.1
Q ss_pred ceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
.+.+++++| .|+++... ..|+.+|.++++.+.+.. ..+
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----~~g---------------------------------- 248 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----FRG---------------------------------- 248 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc----CCC----------------------------------
Confidence 467888998 46555422 238888988777665542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
.....++++||+ |+++.... ....||.+|.++++.+.+..........++++||+.|+++...
T Consensus 249 --~~~~~~~SpDG~~l~~~~s~~------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g 314 (433)
T PRK04922 249 --INGAPSFSPDGRRLALTLSRD------------GNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG 314 (433)
T ss_pred --CccCceECCCCCEEEEEEeCC------------CCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC
Confidence 123568899986 66554321 1237999999888876655443344567999999988766432
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++. .+.+.. ...+....++.+||+
T Consensus 315 ~~~iy~~dl~~g~---~~~lt~-~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 315 RPQIYRVAASGGS---AERLTF-QGNYNARASVSPDGK 348 (433)
T ss_pred CceEEEEECCCCC---eEEeec-CCCCccCEEECCCCC
Confidence 3468888775532 222211 112334567778876
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.036 Score=49.29 Aligned_cols=174 Identities=20% Similarity=0.121 Sum_probs=100.3
Q ss_pred ccEEEe-eCCeEE-EEecCc--EEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEE
Q psy4771 65 PEAVVK-HKGDLY-MGVDGG--HILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKV 137 (337)
Q Consensus 65 P~~i~~-~~g~ly-~d~~~g--~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~v 137 (337)
-+++.+ ++|.+| +.-..| +|.+++. ++......+. ..-.-.||++-.+ +||.-.+..+ .+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----------~~~FgEGit~~~d-~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP----------PRYFGEGITILGD-KLYQLTWKEGTGFVY 115 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T----------TT--EEEEEEETT-EEEEEESSSSEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC----------ccccceeEEEECC-EEEEEEecCCeEEEE
Confidence 346666 789999 444444 6778876 4443333332 2234569998754 8999987766 7888
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCc
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSG 217 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~ 217 (337)
|+++-+...-.. ..| .--|++-|. ..+|+||.+.
T Consensus 116 d~~tl~~~~~~~----y~~------------------------------------EGWGLt~dg-~~Li~SDGS~----- 149 (264)
T PF05096_consen 116 DPNTLKKIGTFP----YPG------------------------------------EGWGLTSDG-KRLIMSDGSS----- 149 (264)
T ss_dssp ETTTTEEEEEEE-----SS------------------------------------S--EEEECS-SCEEEE-SSS-----
T ss_pred ccccceEEEEEe----cCC------------------------------------cceEEEcCC-CEEEEECCcc-----
Confidence 987654332221 111 235777442 3699888763
Q ss_pred eeeeeecCCccEEEEcCCCCeeEE----Eecc--ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec--
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKV----LIAN--LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-- 289 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~----~~~~--~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-- 289 (337)
+|+.+||++-+... -..+ ...-|-+.+- +| .||..-..+++|.++++..+ .+.-.++
T Consensus 150 ----------~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG---~V~~~iDls 214 (264)
T PF05096_consen 150 ----------RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETG---KVVGWIDLS 214 (264)
T ss_dssp ----------EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT----BEEEEEE-H
T ss_pred ----------ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCC---eEEEEEEhh
Confidence 77888887643221 1111 3455667665 56 79999999999999998643 2222221
Q ss_pred ---------CC----CCCCCceeECCCC-CEEEEe
Q psy4771 290 ---------GL----PGLPDNVKRDSKG-NFLVSL 310 (337)
Q Consensus 290 ---------~~----~g~Pdgi~~d~dG-~l~va~ 310 (337)
.. ...-.|||.|+++ ++||+-
T Consensus 215 ~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 215 GLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred HhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 00 1245799999775 599875
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=56.15 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=80.8
Q ss_pred eEEECCCCc--EEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 116 GIKFDKNGA--LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 116 Gl~~d~~G~--lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...+.++|+ +|++... ..|+.+|..+|+.+.+.. ..|
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g---------------------------------- 233 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQG---------------------------------- 233 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCC----------------------------------
Confidence 577888884 6665433 238999998888877763 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
......+++||+ +.++... ..+..||.+|.++++.+.+...-..-..-.++|||++||++...
T Consensus 234 --~~~~~~~SPDG~~la~~~~~------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g 299 (419)
T PRK04043 234 --MLVVSDVSKDGSKLLLTMAP------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG 299 (419)
T ss_pred --cEEeeEECCCCCEEEEEEcc------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence 112345788885 6665543 12458999998888776654332222334799999988877633
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++... ++... +. ....+++||+
T Consensus 300 ~~~Iy~~dl~~g~~~--rlt~~---g~-~~~~~SPDG~ 331 (419)
T PRK04043 300 YPNIFMKKLNSGSVE--QVVFH---GK-NNSSVSTYKN 331 (419)
T ss_pred CceEEEEECCCCCeE--eCccC---CC-cCceECCCCC
Confidence 347999888754321 22222 11 1346778887
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.02 Score=54.71 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=80.3
Q ss_pred ceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...+++++| .|+++... ..|+.+|.++++...+.. ..+
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~~~---------------------------------- 234 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS----FPG---------------------------------- 234 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----CCC----------------------------------
Confidence 356788998 45555432 238888988776655542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC--C
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET--M 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~--~ 267 (337)
....+++++||+ |+++.... ....||.+|..+++.+.+..........++++||++|+++.. +
T Consensus 235 --~~~~~~~spDg~~l~~~~~~~------------~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 235 --MNGAPAFSPDGSKLAVSLSKD------------GNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred --CccceEECCCCCEEEEEECCC------------CCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 123477889986 76654321 123788899887776655443323345688999998866543 2
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|+++++++.. ...+.. ........+++++|+
T Consensus 301 ~~~iy~~d~~~~~---~~~l~~-~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 301 SPQIYMMDADGGE---VRRLTF-RGGYNASPSWSPDGD 334 (417)
T ss_pred CceEEEEECCCCC---EEEeec-CCCCccCeEECCCCC
Confidence 3478888876532 222221 112345667777776
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0054 Score=55.59 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=73.8
Q ss_pred cCCcceEEECCCCcEEEEEC-CCc--EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 111 CGRPLGIKFDKNGALHVADA-YFG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~-~~g--v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
..|.+|++.++.....|+-+ .-| .+.+|..+|+....... .++.
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---~~gR------------------------------ 50 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---PPGR------------------------------ 50 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---CCCC------------------------------
Confidence 46778999999653333322 223 88899998887765542 1221
Q ss_pred CCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC--eeEEEeccccceeeEEEccCCCEEEEE
Q psy4771 188 GAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK--KNKVLIANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~--~~~~~~~~~~~p~gia~~~dg~~lyva 264 (337)
.+--..++++||+ ||.|+... ....|.|-+||...+ .+.....+.-.|..+.+.|||++|.|+
T Consensus 51 ----HFyGHg~fs~dG~~LytTEnd~----------~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 51 ----HFYGHGVFSPDGRLLYTTENDY----------ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred ----EEecCEEEcCCCCEEEEecccc----------CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 1223566889997 77777653 346788889998733 223334455679999999999999999
Q ss_pred eCC
Q psy4771 265 ETM 267 (337)
Q Consensus 265 ~~~ 267 (337)
+.+
T Consensus 117 NGG 119 (305)
T PF07433_consen 117 NGG 119 (305)
T ss_pred cCC
Confidence 965
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.015 Score=56.10 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=71.0
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
-...+++|+| .|+++... ..|+.+|.++++.+.+.. ..+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----~~g--------------------------------- 248 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----FRG--------------------------------- 248 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----CCC---------------------------------
Confidence 4578999999 45444322 238888988776655542 111
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC-
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM- 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~- 267 (337)
.-..++++|||+ |+++..... .-.||.+|.++++.+.+..+.......+++|||+.|+++...
T Consensus 249 ---~~~~~~wSPDG~~La~~~~~~g------------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 249 ---HNGAPAFSPDGSRLAFASSKDG------------VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred ---ccCceeECCCCCEEEEEEecCC------------cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC
Confidence 123578999997 665532211 125888888877776665544445678999999988776533
Q ss_pred -CCEEEEEEeeC
Q psy4771 268 -SSRVHRYYLKG 278 (337)
Q Consensus 268 -~~~I~~~~~~g 278 (337)
..+|+.++.++
T Consensus 314 g~~~I~~~~~~~ 325 (429)
T PRK01742 314 GSPQVYRMSASG 325 (429)
T ss_pred CCceEEEEECCC
Confidence 34666666544
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.028 Score=48.97 Aligned_cols=199 Identities=14% Similarity=0.072 Sum_probs=113.4
Q ss_pred cEEEe--eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCC
Q psy4771 66 EAVVK--HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~--~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g 142 (337)
..+.+ ++.-+|++..+|.+-.||.-....-..+ ....-.+.+...|+. +|+++|....|+..|....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhc----------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 34444 3445789999997777765222111111 111234688888884 9999996556888887644
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
.-....- |+ ...+...+++++||...++-..
T Consensus 157 ~c~~~li------------Pe--------------------------~~~~i~sl~v~~dgsml~a~nn----------- 187 (311)
T KOG0315|consen 157 SCTHELI------------PE--------------------------DDTSIQSLTVMPDGSMLAAANN----------- 187 (311)
T ss_pred ccccccC------------CC--------------------------CCcceeeEEEcCCCcEEEEecC-----------
Confidence 3222211 11 2345678899999875544332
Q ss_pred ecCCccEEEEcCCCCeeEEEe-------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI-------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
.|+.|.++.-+++....+ ..-...--+.+|||++ ..++.+...++..+..++- -..+...++....-
T Consensus 188 ---kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWv 261 (311)
T KOG0315|consen 188 ---KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWV 261 (311)
T ss_pred ---CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc--eeeEEEeecCCceE
Confidence 456666554443321111 1112334567899997 5555556678888887764 22333344334567
Q ss_pred CceeECCCCCEEEEecCC-CCCch---hhccccCCCcc
Q psy4771 296 DNVKRDSKGNFLVSLVCP-VEQPS---EQAGNIRDPAG 329 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~-~~~p~---~~~~~~~~p~~ 329 (337)
.+-++..||.+.|+.... -.++| ..+-+..|+.-
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 889999999877776544 22332 34444555443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.013 Score=58.00 Aligned_cols=204 Identities=11% Similarity=0.101 Sum_probs=114.3
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEEC--C--CcEEEEEcCCCeEEEE
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA--Y--FGLYKVNVTTGQTEQL 147 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~--~--~gv~~vd~~~g~~~~l 147 (337)
.++ ++-..+.+..+|..+.+.... ....++|..+.++++| .+|++.. . ..+..++.........
T Consensus 206 ~l~~~~ey~~~vSvID~etmeV~~q----------V~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETMEVAWQ----------VMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred EeecccceeEEEEEEECccceEEEE----------EEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 455 555556667777654332211 1345689999999998 6777741 1 2266665543333333
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcc--cccceeeecccc-----CC-----CCCCCCccEEEcCCCc-EEEEcCCCCc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEI-----DG-----AKPQIPNSVTVDSDGM-VYWSDSSTKY 214 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~-----~~-----~~~~~pn~v~vd~~G~-lyvtd~~~~~ 214 (337)
... .+ .-++.++|+.. ..+.|..++... .. .-...|.+++++|||+ +|++...+.
T Consensus 276 fni----~~-------iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~- 343 (635)
T PRK02888 276 FNI----AR-------IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSP- 343 (635)
T ss_pred Ech----HH-------HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCC-
Confidence 221 10 11223345443 334455555433 01 0357899999999997 888876543
Q ss_pred cCceeeeeecCCccEEEEcCCCCee---------EEEe---ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC---
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKN---------KVLI---ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--- 279 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~---------~~~~---~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--- 279 (337)
.+-.+|.++.+. ..+. .-...|--.+|+.+|+ .|++-.-.+.|.+.+++..
T Consensus 344 -------------tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~ 409 (635)
T PRK02888 344 -------------TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRA 409 (635)
T ss_pred -------------cEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHH
Confidence 444444433210 0111 1134688899999984 9999999999999998641
Q ss_pred CCCc-eeeeecC-----CCC---CCCceeECCCCCEEEEecCC
Q psy4771 280 KQGK-SEVFIDG-----LPG---LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 280 ~~~~-~~~~~~~-----~~g---~Pdgi~~d~dG~l~va~~~~ 313 (337)
..|. ...+.+. .|| .+.|=..++||+..++...-
T Consensus 410 ~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 410 YKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred hccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence 0011 1111111 122 24566678999988888644
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=63.94 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCcc-----------EEEEcCCCCeeEEEecc--ccceeeEEEcc
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR-----------LIQYNPKTKKNKVLIAN--LHFANGVELSA 256 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~-----------v~~~d~~~~~~~~~~~~--~~~p~gia~~~ 256 (337)
.+..|..|++|++|+||+++........+.. ....|. ++..++.+++++.+... -.-..|++++|
T Consensus 434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g--~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPG--VTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CcCCCCceEECCCCCEEEEeCCCCCCccccc--ccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC
Confidence 6889999999999999997765432111000 111222 55567777777665543 23457999999
Q ss_pred CCCEEEEEe
Q psy4771 257 DESFVIVAE 265 (337)
Q Consensus 257 dg~~lyva~ 265 (337)
|+++|||.-
T Consensus 512 Dg~tlFvni 520 (524)
T PF05787_consen 512 DGRTLFVNI 520 (524)
T ss_pred CCCEEEEEE
Confidence 999999854
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.025 Score=54.58 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=96.1
Q ss_pred EEEEecCc--EEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC---cEEE--EEcCC---
Q psy4771 75 LYMGVDGG--HILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF---GLYK--VNVTT--- 141 (337)
Q Consensus 75 ly~d~~~g--~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~---gv~~--vd~~~--- 141 (337)
+|++..++ +|+.++. ++.+.+..+. +.....++.||| .|.++.... .++. ++.++
T Consensus 202 ~y~S~~~g~~~I~~~~l~~g~~~~lt~~~------------g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 202 LYVSYKLGVPKIFLGSLENPAGKKILALQ------------GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred EEEEccCCCceEEEEECCCCCceEeecCC------------CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 45655543 5777765 3333443221 223356899999 665554221 3444 34443
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc---c--cc--ceeeeccccCC---C----CCCCCccEEEcCCCc-EE
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---Q--TE--QLISMDTEIDG---A----KPQIPNSVTVDSDGM-VY 206 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~--~~--~v~~~~~~~~~---~----~~~~pn~v~vd~~G~-ly 206 (337)
++.+.+... ..+ .....+.++||+.+ + .+ .+..+.....+ . ........+++|||+ |+
T Consensus 270 g~~~~lt~~---~~~----~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 270 GKPRRLLNE---AFG----TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred CcceEeecC---CCC----CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 344444421 111 12345778888855 1 11 34443321111 0 112234677888886 65
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC--CCCEEEEEEeeCC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET--MSSRVHRYYLKGP 279 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~--~~~~I~~~~~~g~ 279 (337)
++.... ....|+.+|.++++.+.+..+.......+++|||+.|+++.. +...|+.++++++
T Consensus 343 f~~~~~------------g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 343 FCSVIK------------GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEcCC------------CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 554321 123799999999988776654334567899999999887644 3467888888754
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.055 Score=48.80 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=116.6
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEeCC------ceeE-EEecCccccCccccCccCCcceEEECCCCcEEEEEC
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGG------KLVP-VVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA 130 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~------~~~~-~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~ 130 (337)
-.+..|.+|++ ..+.+| +|...+....|+.. .... +..+.... .......|.|+.+.......|+..
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~----~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP----PLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC----CCCCCCCccEEEEeCCCceEEcCC
Confidence 34668899999 588999 77777777777653 1111 11221100 012235699999986655445542
Q ss_pred C-C--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCC--CC--------------Ccc-----cccceeeecccc
Q psy4771 131 Y-F--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS--DG--------------QTG-----QTEQLISMDTEI 186 (337)
Q Consensus 131 ~-~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~--~g--------------~~~-----~~~~v~~~~~~~ 186 (337)
. . ..+.+..++|.+.-.... -+.....+..+++|. .| +.+ ..++|-+++..+
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~----v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPA----LGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred CcccceeEEEEeCCceEEeecCc----CCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 2 1 245666667776655421 000000012233321 12 222 335555555444
Q ss_pred CCCC------------CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeE
Q psy4771 187 DGAK------------PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGV 252 (337)
Q Consensus 187 ~~~~------------~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gi 252 (337)
.... --.|-+|..- .|+||||-...+-. ...+......|.|-+||+++..++++.. .|..|.||
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc-ccccccCCCcceEEEEcCCCcEEEEeccCCcccCCcee
Confidence 3211 1134455332 46899886554321 1122334566899999998766666654 37899999
Q ss_pred EEcc------CCCEEEEEeCCCCEEEEEEee
Q psy4771 253 ELSA------DESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 253 a~~~------dg~~lyva~~~~~~I~~~~~~ 277 (337)
++.| .| .|+|.+.+.++|-.||..
T Consensus 250 a~APa~FG~~sg-~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 250 AIAPESFGSLSG-ALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred eeChhhhCCCCC-CeEEeecCCceeEEecCC
Confidence 9975 34 599999999999999985
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0027 Score=53.83 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
+.-+|++.|.+ +|+.+|...-+..-||++-....-+.. ..+ +.+.
T Consensus 131 GeGWgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~V--T~~--------------------------------g~pv 175 (262)
T COG3823 131 GEGWGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQV--TDD--------------------------------GVPV 175 (262)
T ss_pred CcceeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEE--EEC--------------------------------Ceec
Confidence 34468887655 688887544477777764221111000 011 2244
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-------------cccceeeEEEccCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-------------NLHFANGVELSADE 258 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-------------~~~~p~gia~~~dg 258 (337)
...|-+..= ||.+|..-+.. -+|.|++|++|++....+ ....+||||..+++
T Consensus 176 ~~LNELE~V-dG~lyANVw~t--------------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~ 240 (262)
T COG3823 176 SKLNELEWV-DGELYANVWQT--------------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ 240 (262)
T ss_pred ccccceeee-ccEEEEeeeee--------------cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcC
Confidence 445555432 46666443332 288999999998765442 23468999999999
Q ss_pred CEEEEEeCCCCEEEEEE
Q psy4771 259 SFVIVAETMSSRVHRYY 275 (337)
Q Consensus 259 ~~lyva~~~~~~I~~~~ 275 (337)
+++|++-..=..++.+.
T Consensus 241 ~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 241 DRFLITGKLWPLLFEVK 257 (262)
T ss_pred CeEEEecCcCceeEEEE
Confidence 89999764433444433
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00023 Score=40.53 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=20.7
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEE
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYK 136 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~ 136 (337)
..|.||+++++|+|||||..+. |.+
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 4699999999999999997654 544
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0021 Score=62.08 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCc--cCceeeeeecCCccEEEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEe
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAE 265 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~--~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~ 265 (337)
-+++|.+++||+.|+||+....+.. .+. ...-+.+..=+++++++.....+ -+--.|.+++||++++||.-
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~-----~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR-----FRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcc-----cccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 4788999999999999987655331 110 00111333334555555444332 23457999999999999976
Q ss_pred CC
Q psy4771 266 TM 267 (337)
Q Consensus 266 ~~ 267 (337)
..
T Consensus 573 QH 574 (616)
T COG3211 573 QH 574 (616)
T ss_pred cC
Confidence 54
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.023 Score=51.12 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=88.1
Q ss_pred CccCCcceEEECCCCcEEEEECCCcE-EEEEcC--C--CeEEEE-eccccccCCCCCCCCCceeeCCCCCcccccceeee
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAYFGL-YKVNVT--T--GQTEQL-ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISM 182 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~~gv-~~vd~~--~--g~~~~l-~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~ 182 (337)
+.+..|+||++.|.|.+||+|...+. ..+|.+ + +....+ +... ...+.
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP-~~~~~------------------------- 73 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIP-APPPL------------------------- 73 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEec-CCCCC-------------------------
Confidence 45677999999999999999987662 333332 1 111111 1100 00110
Q ss_pred ccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee----E-EEecc---ccceeeEEE
Q psy4771 183 DTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN----K-VLIAN---LHFANGVEL 254 (337)
Q Consensus 183 ~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~----~-~~~~~---~~~p~gia~ 254 (337)
.....|.++++.....+-++...... ...-+....+|.|.-+.|.-+.. . ++.+. ...=.|+|+
T Consensus 74 ------~~~~~PTGiVfN~~~~F~vt~~g~~~--~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi 145 (336)
T TIGR03118 74 ------AAEGTPTGQVFNGSDTFVVSGEGITG--PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAV 145 (336)
T ss_pred ------CCCCCccEEEEeCCCceEEcCCCccc--ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEE
Confidence 02345777777654334344422110 00012234456666666543222 0 12221 112257777
Q ss_pred ccC--CCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCC--CCCceeECCCCCEEEEecCC
Q psy4771 255 SAD--ESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPG--LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 255 ~~d--g~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g--~Pdgi~~d~dG~l~va~~~~ 313 (337)
... +++||.++..+++|-+|+-+=.+.....-|.+ .+|. -|.||.-- .|+|||+....
T Consensus 146 ~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~q 208 (336)
T TIGR03118 146 GPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQ 208 (336)
T ss_pred eecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEec
Confidence 743 67999999999999999754222211223443 1332 27777543 57899987644
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.073 Score=51.00 Aligned_cols=219 Identities=18% Similarity=0.230 Sum_probs=115.0
Q ss_pred EEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCe
Q psy4771 67 AVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~ 143 (337)
++.+ .||..| +...+|+|+-||......+..++.. ...-+.-.+|.+.||+ ++.-+.+...+...|..+++
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 4445 578888 7788999999987444444344321 2344567789999998 45444443444444444444
Q ss_pred EEEEeccccccCCCCC----CCCCceeeCCCCCcc----cccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCcc
Q psy4771 144 TEQLISMDTEIDGAKP----QIPNSVTVDSDGQTG----QTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK 215 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~----~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~ 215 (337)
+.+-.......+-+.. ..-+-++++-+|.+- ....+..+ +.| --.....+++.+||.-.++-
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~---i~G-HnK~ITaLtv~~d~~~i~Sg------ 338 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV---ISG-HNKSITALTVSPDGKTIYSG------ 338 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe---ecc-cccceeEEEEcCCCCEEEee------
Confidence 3332221111111100 001113333333321 11111110 001 12345677888887633332
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g 293 (337)
.-+|.|..++..+|....+.. .-..-.+++.+..+ .++-+. ..+.+.++++.+......+++ + ++.
T Consensus 339 --------syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g-~Dd~l~~~~~~~~~~t~~~~~-~-lg~ 406 (603)
T KOG0318|consen 339 --------SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIG-WDDTLRVISLKDNGYTKSEVV-K-LGS 406 (603)
T ss_pred --------ccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEe-cCCeEEEEecccCccccccee-e-cCC
Confidence 235677777776665444432 23345788877655 355444 467899999876544443332 2 456
Q ss_pred CCCceeECCCCC-EEEEecCC
Q psy4771 294 LPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 294 ~Pdgi~~d~dG~-l~va~~~~ 313 (337)
.|-++++.++|. ..+++...
T Consensus 407 QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred CceeEEEcCCCCEEEEEecCc
Confidence 788999999975 55555443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.073 Score=46.41 Aligned_cols=173 Identities=19% Similarity=0.174 Sum_probs=91.7
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEecc
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~ 150 (337)
.++.+|+...++.|+.++..+.+.+..+. +. .....+ . .-.++.+||+.....++.+|.++|++..-...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~-----~~~~~~--~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFD--LP-----GPISGA--P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEE--CS-----SCGGSG--E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEee--cc-----ccccce--e-eecccccccccceeeeEecccCCcceeeeecc
Confidence 78999987889999999963332221111 00 000111 2 33456899987556799999888877655211
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~ 230 (337)
. ..+. .....+...+++ ++.+|+... .|.|+
T Consensus 105 ~-~~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~---------------~g~l~ 135 (238)
T PF13360_consen 105 T-SSPP--------------------------------AGVRSSSSPAVD-GDRLYVGTS---------------SGKLV 135 (238)
T ss_dssp --SSCT--------------------------------CSTB--SEEEEE-TTEEEEEET---------------CSEEE
T ss_pred c-cccc--------------------------------cccccccCceEe-cCEEEEEec---------------cCcEE
Confidence 0 0000 012233444444 345666654 35888
Q ss_pred EEcCCCCeeEEEeccccce------------eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 231 QYNPKTKKNKVLIANLHFA------------NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 231 ~~d~~~~~~~~~~~~~~~p------------~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
.+|+++|+...-... ..+ ++-.+..++ .+|++..... +..++...+ . ..+... ...+..+
T Consensus 136 ~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~tg---~-~~w~~~-~~~~~~~ 207 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLATG---E-KLWSKP-ISGIYSL 207 (238)
T ss_dssp EEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEECCTSS-EEEEETTTT---E-EEEEEC-SS-ECEC
T ss_pred EEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEcCCCe-EEEEECCCC---C-EEEEec-CCCccCC
Confidence 888888876332221 221 233333345 7999886654 555565432 2 223222 2224443
Q ss_pred eECCCCCEEEEe
Q psy4771 299 KRDSKGNFLVSL 310 (337)
Q Consensus 299 ~~d~dG~l~va~ 310 (337)
....++.+|++.
T Consensus 208 ~~~~~~~l~~~~ 219 (238)
T PF13360_consen 208 PSVDGGTLYVTS 219 (238)
T ss_dssp EECCCTEEEEEE
T ss_pred ceeeCCEEEEEe
Confidence 445566788877
|
... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.035 Score=52.57 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=105.2
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEE
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTE 145 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~ 145 (337)
+.++.+|.+++-+..|+.+-+++.....+ ..++. ..-+=.-+..+++ .+.+.+.. ..+-.+|.++++++
T Consensus 326 dfa~~~Gd~ia~VSRGkaFi~~~~~~~~i-qv~~~--------~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 326 DFAVVNGDYIALVSRGKAFIMRPWDGYSI-QVGKK--------GGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred hhccCCCcEEEEEecCcEEEECCCCCeeE-EcCCC--------CceEEEEEccCCc-ceEEeccCCceEEEEecCCceEE
Confidence 33444667776666676666654221111 12211 0001112333444 34555432 24888888888888
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeec
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~ 224 (337)
++.. .+.....+.++++|. +.+++.
T Consensus 396 r~e~----------------------------------------~lg~I~av~vs~dGK~~vvaNd-------------- 421 (668)
T COG4946 396 RIEK----------------------------------------DLGNIEAVKVSPDGKKVVVAND-------------- 421 (668)
T ss_pred EeeC----------------------------------------CccceEEEEEcCCCcEEEEEcC--------------
Confidence 7754 355677889999987 554443
Q ss_pred CCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCC---CCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 225 GSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETM---SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~---~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
.+.||.+|.++|.++..... -..-.+++++|+.+++-.+-.. ...|..|++++++.-...+ ..++-..-++
T Consensus 422 -r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaF 496 (668)
T COG4946 422 -RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAF 496 (668)
T ss_pred -ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCccc
Confidence 24788888888887544321 2345678888888766443322 3578888887754322111 1233345679
Q ss_pred CCCCCEEEEecCCCCCchhhccc
Q psy4771 301 DSKGNFLVSLVCPVEQPSEQAGN 323 (337)
Q Consensus 301 d~dG~l~va~~~~~~~p~~~~~~ 323 (337)
|+||++..=....+-+|+..+++
T Consensus 497 D~d~ryLYfLs~RsLdPs~Drv~ 519 (668)
T COG4946 497 DPDGRYLYFLSARSLDPSNDRVI 519 (668)
T ss_pred CCCCcEEEEEeccccCCCCCeeE
Confidence 99998333333333455555543
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0008 Score=42.04 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=34.1
Q ss_pred EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 242 LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 242 ~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
+..++..|+|+|+++.++.||++|...+.|.+++++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 45578899999999999999999999999999998874
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.021 Score=51.12 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=44.0
Q ss_pred cccCccEEEe-eCCeEE-EEecCcEEEEEe--CCc-eeEEE----ecCccccCccccCccCCcceEEECCCC-cEEEEEC
Q psy4771 61 EIHGPEAVVK-HKGDLY-MGVDGGHILKLS--GGK-LVPVV----KLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA 130 (337)
Q Consensus 61 ~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~--~~~-~~~~~----~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~ 130 (337)
.+..||.|++ .+|... ++..+++++.+. .++ ..... .++.. .+.-..-.|++.|+.+ ++||+-.
T Consensus 127 g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~------~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 127 GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTT------NKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecccc------CCCCcCceeeecCCCCceEEEEEc
Confidence 3568999999 444444 899999988874 332 21111 12211 0111235699999986 9999975
Q ss_pred CC--cEEEEE
Q psy4771 131 YF--GLYKVN 138 (337)
Q Consensus 131 ~~--gv~~vd 138 (337)
.+ +|+.++
T Consensus 201 r~P~~I~~~~ 210 (316)
T COG3204 201 RNPIGIFEVT 210 (316)
T ss_pred cCCcEEEEEe
Confidence 43 467665
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.031 Score=54.47 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=98.7
Q ss_pred CcccCccEEEe-eCCe-EEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EE
Q psy4771 60 NEIHGPEAVVK-HKGD-LYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LY 135 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~-ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~ 135 (337)
+...+-.++++ .++. +-+...+++|..|+. .....+..+- .......+++|.++|+++++-.+.+ |+
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---------gH~~~v~~~~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---------GHSTYVTSVAFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec---------CCCCceEEEEecCCCCEEEEecCCCcEE
Confidence 33334455666 4554 447777777777775 3222222221 2234468999999998888866655 77
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCcc
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK 215 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~ 215 (337)
..|.++++....... . -...+++++.++|++.++...
T Consensus 272 iWd~~~~~~~~~l~~---h------------------------------------s~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKG---H------------------------------------SDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred EEeccCCeEEEeeec---c------------------------------------CCceEEEEECCCCCEEEEcCC----
Confidence 788887665444321 1 123678899999987766633
Q ss_pred CceeeeeecCCccEEEEcCCCCee--EEEeccccce---eeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKN--KVLIANLHFA---NGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~--~~~~~~~~~p---~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+|.|..+|..+++. .....+...+ +-+++++++++++++-. .+.+.-+++.
T Consensus 309 ----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l~ 364 (456)
T KOG0266|consen 309 ----------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDLR 364 (456)
T ss_pred ----------CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CCeEEEEEcc
Confidence 46889999988883 2334444445 88999999987776654 3455555654
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0031 Score=60.80 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=87.4
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC-C
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP-Q 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~-~ 192 (337)
...+.+|.+|++||+. ..|++++|..++++..+..+ ++ .
T Consensus 167 V~aLv~D~~g~lWvgT-~dGL~~fd~~~gkalql~s~---------------------------------------~~dk 206 (671)
T COG3292 167 VVALVFDANGRLWVGT-PDGLSYFDAGRGKALQLASP---------------------------------------PLDK 206 (671)
T ss_pred ceeeeeeccCcEEEec-CCcceEEccccceEEEcCCC---------------------------------------cchh
Confidence 3478999999999995 58999999988888777642 12 3
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceee----EEEccCCCEEEEEeCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANG----VELSADESFVIVAETMS 268 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~g----ia~~~dg~~lyva~~~~ 268 (337)
..|.+..|-.|++||.... .++++++.+.+. ...+...|.+ +.-+.+| .+|+....
T Consensus 207 ~I~al~~d~qg~LWVGTdq----------------Gv~~~e~~G~~~--sn~~~~lp~~~I~ll~qD~qG-~lWiGTen- 266 (671)
T COG3292 207 AINALIADVQGRLWVGTDQ----------------GVYLQEAEGWRA--SNWGPMLPSGNILLLVQDAQG-ELWIGTEN- 266 (671)
T ss_pred hHHHHHHHhcCcEEEEecc----------------ceEEEchhhccc--cccCCCCcchheeeeecccCC-CEEEeecc-
Confidence 4677888889999997764 567777665332 2223334444 2333456 58887643
Q ss_pred CEEEEEEeeCCCCCceeeeecCCCC--CCCceeECCCCCEEEEecCC
Q psy4771 269 SRVHRYYLKGPKQGKSEVFIDGLPG--LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~~~~~~~~~~g--~Pdgi~~d~dG~l~va~~~~ 313 (337)
.+.|+......+.... .+..++ ...++..|.+|.+|+.....
T Consensus 267 -Gl~r~~l~rq~Lq~~~--~~~~l~~S~vnsL~~D~dGsLWv~t~~g 310 (671)
T COG3292 267 -GLWRTRLPRQGLQIPL--SKMHLGVSTVNSLWLDTDGSLWVGTYGG 310 (671)
T ss_pred -cceeEecCCCCccccc--cccCCccccccceeeccCCCEeeeccCc
Confidence 4555554332111111 111122 23678899999999999886
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.093 Score=47.12 Aligned_cols=142 Identities=11% Similarity=0.140 Sum_probs=84.6
Q ss_pred CCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-
Q psy4771 112 GRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE- 185 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~- 185 (337)
.+.+.|.+.|-+..+++.+.. .|+..|....+-.-+.. .. .+.-.|+|++|-+. ..+.|...+.+
T Consensus 101 ~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----~~-----~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 101 KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----LS-----GRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----cC-----CCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 345678888888888886654 47777765433332322 11 24557788888776 22333333322
Q ss_pred cCCC----------CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec----ccccee
Q psy4771 186 IDGA----------KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA----NLHFAN 250 (337)
Q Consensus 186 ~~~~----------~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~----~~~~p~ 250 (337)
++.. ....-++|.+++||+ |.+++.. +.++.+|.-+|++..-.. ....|-
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---------------SFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---------------CcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 2121 123457899999997 6666554 355666655565432222 233455
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 251 GVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 251 gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+.+++||+++++.++ ..++|..++++.
T Consensus 237 ~a~ftPds~Fvl~gs-~dg~i~vw~~~t 263 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGS-DDGTIHVWNLET 263 (311)
T ss_pred eEEECCCCcEEEEec-CCCcEEEEEcCC
Confidence 788999998776665 457999998853
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=53.54 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=47.0
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.+..|.+--.. +|+|||+|+. .|.+.++|+++|+.+.+..--.+|.|+++. |+.++|+-+
T Consensus 201 GLsmPhSPRWh-dgrLwvldsg--------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 201 GLSMPHSPRWY-QGKLWLLNSG--------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CccCCcCCcEe-CCeEEEEECC--------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 35556655553 5899999987 459999999989888887767799999998 877777654
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.026 Score=54.72 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=73.6
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEecc
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~ 150 (337)
.+|.+|+++.+| +++++..+.+.+..-.. +....-+.+..|-.|+|||.. +.|+++.++++-...-..
T Consensus 174 ~~g~lWvgT~dG-L~~fd~~~gkalql~s~--------~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~-- 241 (671)
T COG3292 174 ANGRLWVGTPDG-LSYFDAGRGKALQLASP--------PLDKAINALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG-- 241 (671)
T ss_pred ccCcEEEecCCc-ceEEccccceEEEcCCC--------cchhhHHHHHHHhcCcEEEEe-ccceEEEchhhccccccC--
Confidence 478899999898 99998855443321100 111223467788899999995 689999998762221111
Q ss_pred ccccCCCCCCCCCc----eeeCCCCCcc--cccceeeec--cc-------cCCCCCCCCccEEEcCCCcEEEEcCC
Q psy4771 151 DTEIDGAKPQIPNS----VTVDSDGQTG--QTEQLISMD--TE-------IDGAKPQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 151 ~~~~~g~~~~~P~~----v~~~~~g~~~--~~~~v~~~~--~~-------~~~~~~~~pn~v~vd~~G~lyvtd~~ 211 (337)
.++|.+ +..|.+|++= +.++..... .+ -...+.+..|++..|.+|.+|+++..
T Consensus 242 --------~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~ 309 (671)
T COG3292 242 --------PMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYG 309 (671)
T ss_pred --------CCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccC
Confidence 124444 3346677664 333333222 11 11123456689999999999998876
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.11 Score=51.79 Aligned_cols=181 Identities=15% Similarity=0.099 Sum_probs=106.2
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC--cEEEEEcCCCeEEEEec
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF--GLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~--gv~~vd~~~g~~~~l~~ 149 (337)
+..+++..-+|++--||-...+.+.+|- .+....-..+++|+.|.|.++-+.. .|+..+.++|+..-+..
T Consensus 404 g~~llssSLDGtVRAwDlkRYrNfRTft--------~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYRNFRTFT--------SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred CCEEEEeecCCeEEeeeecccceeeeec--------CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 4455677778877777764433333321 1222334589999999998886443 48888989998765543
Q ss_pred cccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
..+| -..++.++++|.+.++-+-.+ .=++
T Consensus 476 ---GHEg------------------------------------PVs~l~f~~~~~~LaS~SWDk------------TVRi 504 (893)
T KOG0291|consen 476 ---GHEG------------------------------------PVSGLSFSPDGSLLASGSWDK------------TVRI 504 (893)
T ss_pred ---CCCC------------------------------------cceeeEEccccCeEEeccccc------------eEEE
Confidence 1222 146788999998665554321 1255
Q ss_pred EEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC-CCCCc-------------eeeeec-C--CC
Q psy4771 230 IQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG-PKQGK-------------SEVFID-G--LP 292 (337)
Q Consensus 230 ~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g-~~~~~-------------~~~~~~-~--~~ 292 (337)
|-+=...++.+.+. --.-.-++++.|||+.|-|+.. .+.|.-|+... ...+. ...+.. + ..
T Consensus 505 W~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl-dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 505 WDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL-DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG 582 (893)
T ss_pred EEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe-cceEEEEEhhhceeeccccchhhccccccccceeehhhcccC
Confidence 54433445554432 2234568999999998888765 45677776642 11111 111111 0 01
Q ss_pred CCCCceeECCCCCEEEEecCC
Q psy4771 293 GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-.-..|+...||++.+|....
T Consensus 583 K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGES 603 (893)
T ss_pred CceEEEEEcCCCCEEEecCCc
Confidence 123568888888877777655
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.03 Score=51.98 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=78.1
Q ss_pred CcceEEECCCCcEEEEECCC-------cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccc
Q psy4771 113 RPLGIKFDKNGALHVADAYF-------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTE 185 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~-------gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~ 185 (337)
.+.||++.++|.+||++.+. .|++++.++.....+.- |..+.....+.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v------------P~~~~~~~~~~------------- 140 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV------------PAAFLPDANGT------------- 140 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc------------ccccccccCcc-------------
Confidence 67899998889999998765 39999987433344421 22111111000
Q ss_pred cCC-CCCCCCccEEEcCCCc-EEEEcCCCCccCceee-eeecCCccEEEEcCCC-Ce-eEE---Eec------cccceee
Q psy4771 186 IDG-AKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE-GLTSGSGRLIQYNPKT-KK-NKV---LIA------NLHFANG 251 (337)
Q Consensus 186 ~~~-~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~-~~~~~~G~v~~~d~~~-~~-~~~---~~~------~~~~p~g 251 (337)
.+ ..=....+|++.++|+ ||+.-.+.-..+.... ......-+|++||+.+ ++ ... ..+ ....+..
T Consensus 141 -~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd 219 (326)
T PF13449_consen 141 -SGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISD 219 (326)
T ss_pred -ccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCcee
Confidence 00 0123467999999998 8877665422111100 0011113788999875 21 111 122 2334556
Q ss_pred EEEccCCCEEEEEeCC-------CCEEEEEEeeC
Q psy4771 252 VELSADESFVIVAETM-------SSRVHRYYLKG 278 (337)
Q Consensus 252 ia~~~dg~~lyva~~~-------~~~I~~~~~~g 278 (337)
++.-+|++ ++|-|.. ..+|+++++.+
T Consensus 220 ~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 220 IAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred EEEECCCc-EEEEEccCCCCccceEEEEEEEccc
Confidence 66777875 9998876 34666777653
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0077 Score=59.38 Aligned_cols=120 Identities=18% Similarity=0.330 Sum_probs=72.8
Q ss_pred CCCCCccEEEcC-CCcEEEEcCCCCcc--Cce---eeeeecCCccEEEEcCCCC-------eeEEEe-------------
Q psy4771 190 KPQIPNSVTVDS-DGMVYWSDSSTKYK--SGL---FEGLTSGSGRLIQYNPKTK-------KNKVLI------------- 243 (337)
Q Consensus 190 ~~~~pn~v~vd~-~G~lyvtd~~~~~~--~~~---~~~~~~~~G~v~~~d~~~~-------~~~~~~------------- 243 (337)
++..|.++++++ +|.+||+.+...-+ ..+ ........|.|+++++..+ +.+.++
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 578899999999 57899987664311 000 0012456689999998765 332222
Q ss_pred -----ccccceeeEEEccCCCEEEEEeCCCCE------------EEEEE--------eeCCCCCceeeeecC-CCCCCCc
Q psy4771 244 -----ANLHFANGVELSADESFVIVAETMSSR------------VHRYY--------LKGPKQGKSEVFIDG-LPGLPDN 297 (337)
Q Consensus 244 -----~~~~~p~gia~~~dg~~lyva~~~~~~------------I~~~~--------~~g~~~~~~~~~~~~-~~g~Pdg 297 (337)
..+..|.+|+++++|+ ||+++-.... ++.+. ..+...+....|... ...-..|
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG 506 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITG 506 (524)
T ss_pred CcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccccc
Confidence 2266899999999996 7776644332 11121 112223333444331 1234679
Q ss_pred eeECCCCC-EEEEe
Q psy4771 298 VKRDSKGN-FLVSL 310 (337)
Q Consensus 298 i~~d~dG~-l~va~ 310 (337)
+++++||+ +||..
T Consensus 507 ~~fspDg~tlFvni 520 (524)
T PF05787_consen 507 PCFSPDGRTLFVNI 520 (524)
T ss_pred ceECCCCCEEEEEE
Confidence 99999997 88876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.052 Score=52.24 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=67.8
Q ss_pred eEEECCCC-cEEEEECCCc---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~g---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
.-+|.+|| .|.++....+ |+.+|..++....+.. ..|.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~----~~gi---------------------------------- 283 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN----GFGI---------------------------------- 283 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc----CCcc----------------------------------
Confidence 45677888 6666644433 8999988777555432 1221
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
-..=.+.|||+ |+|+..... .-.||++|+++++.+.+.........-.++|||++|.+.....+.
T Consensus 284 --~~~Ps~spdG~~ivf~Sdr~G------------~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 284 --NTSPSWSPDGSKIVFTSDRGG------------RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred --ccCccCCCCCCEEEEEeCCCC------------CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 01233678886 655543321 128999999988876665554444466789999988887754444
Q ss_pred --EEEEEe
Q psy4771 271 --VHRYYL 276 (337)
Q Consensus 271 --I~~~~~ 276 (337)
|..+++
T Consensus 350 ~~i~~~~~ 357 (425)
T COG0823 350 WDIDKNDL 357 (425)
T ss_pred eeeEEecc
Confidence 555554
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.18 Score=44.75 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=105.4
Q ss_pred CeEEEEecCcEEEEEeC--Ccee---EEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEE
Q psy4771 73 GDLYMGVDGGHILKLSG--GKLV---PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQ 146 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~--~~~~---~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~ 146 (337)
+.++....+..|+.|+. .+.. ....+ ......-.++++.++|+..++-+..+ ++..|..+|+-++
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~---------~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~ 99 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRL---------TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR 99 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeee---------eccceEecceEEccCCceEEeccccceEEEEEecCCcEEE
Confidence 45668888888888864 1111 11111 01224466899999999999877766 7778998876544
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCC
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS 226 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~ 226 (337)
..- | .-.-.-++++++|.+-.++-+..+
T Consensus 100 ~f~------G---------------------------------H~~dVlsva~s~dn~qivSGSrDk------------- 127 (315)
T KOG0279|consen 100 RFV------G---------------------------------HTKDVLSVAFSTDNRQIVSGSRDK------------- 127 (315)
T ss_pred EEE------e---------------------------------cCCceEEEEecCCCceeecCCCcc-------------
Confidence 432 1 112356888999887777766543
Q ss_pred ccEEEEcCCCCeeEEEecc--ccceeeEEEccCCC-EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCC
Q psy4771 227 GRLIQYNPKTKKNKVLIAN--LHFANGVELSADES-FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~-~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
.|-.+|..+...-.+.++ -..-+.++|+|+.+ -+.++......|.+.++++-+. ...|.. ..++-.-+++.+|
T Consensus 128 -Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~g-h~~~v~t~~vSpD 203 (315)
T KOG0279|consen 128 -TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIG-HSGYVNTVTVSPD 203 (315)
T ss_pred -eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhcccc-ccccEEEEEECCC
Confidence 444444443333233333 45778999999863 4555555567777777765322 122222 3456677788888
Q ss_pred CCEEEEe
Q psy4771 304 GNFLVSL 310 (337)
Q Consensus 304 G~l~va~ 310 (337)
|.+..+-
T Consensus 204 GslcasG 210 (315)
T KOG0279|consen 204 GSLCASG 210 (315)
T ss_pred CCEEecC
Confidence 8776663
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.2 Score=43.57 Aligned_cols=156 Identities=20% Similarity=0.178 Sum_probs=84.9
Q ss_pred EeeCCeEEEEecCcEEEEEeCCceeEEEe---cCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSGGKLVPVVK---LGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
...++.+|+...+++|+.++..+....-. .... ...+..+....++ .+.+|++.....|+.+|+++|+..
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP------PAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC------TCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeecccccc------ccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEE
Confidence 34788999777888999999522222211 1111 0112234445554 447888876567999999999875
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecC
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~ 225 (337)
.-... ....+. ..+ . .+...++-.+-.+|.+|++...
T Consensus 146 w~~~~-~~~~~~-----~~~--------------~---------~~~~~~~~~~~~~~~v~~~~~~-------------- 182 (238)
T PF13360_consen 146 WKYPV-GEPRGS-----SPI--------------S---------SFSDINGSPVISDGRVYVSSGD-------------- 182 (238)
T ss_dssp EEEES-STT-SS-------E--------------E---------EETTEEEEEECCTTEEEEECCT--------------
T ss_pred EEeec-CCCCCC-----cce--------------e---------eecccccceEEECCEEEEEcCC--------------
Confidence 54431 000000 000 0 0001112222234578877754
Q ss_pred CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
|+++.+|..+++.. .........++ ...+++.||+++ ..++|+.++++.
T Consensus 183 -g~~~~~d~~tg~~~-w~~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 183 -GRVVAVDLATGEKL-WSKPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp -SSEEEEETTTTEEE-EEECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETTT
T ss_pred -CeEEEEECCCCCEE-EEecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECCC
Confidence 35677788888754 22223333332 335666899999 678999999764
|
... |
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.1 Score=49.19 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=82.5
Q ss_pred eEEECCCCc-EEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 116 GIKFDKNGA-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 116 Gl~~d~~G~-lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
..+|.++|. .+++..... ++.+|..+.++..+..+ .|. .-.+
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~----~g~--------------------------------e~~~ 305 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP----YGV--------------------------------EEKS 305 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeeccccccccccCC----CCc--------------------------------ccch
Confidence 567888996 444433233 78889988888877642 221 1223
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..-..|++++.+..... ..|.|+.+...+++...-..--....+++|+.|++.||++... +.|++
T Consensus 306 ~e~FeVShd~~fia~~G--------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-GeV~v 370 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAG--------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-GEVYV 370 (514)
T ss_pred hheeEecCCCCeEEEcc--------------cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-ceEEE
Confidence 45667777776333222 2456666666555432111111245788999999888887654 48999
Q ss_pred EEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 274 YYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
+++.-. .-...|.+...-.-..+|+..+|. |+|...
T Consensus 371 ~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 371 WNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred EecCCc--ceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 998643 223344442111235566667776 445443
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.11 Score=48.96 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=39.3
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee--cC--CCCCCCceeE--CCC--CCEEEEecCC
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI--DG--LPGLPDNVKR--DSK--GNFLVSLVCP 313 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~--~~--~~g~Pdgi~~--d~d--G~l~va~~~~ 313 (337)
...+.|++++....+||++|.. ..||+|+.+.......+.+. .+ +-.-..||++ ..+ |.|.|+.-..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred CCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 3478999999988899999976 68999998643222222221 21 2223567776 344 4455555443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.12 Score=44.17 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=70.2
Q ss_pred CcceEEECCCC-cEEEEECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 113 RPLGIKFDKNG-ALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 113 ~P~Gl~~d~~G-~lyVad~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
....+++.|+| ++.|+... ..+..+|.++..+..+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~----------------------------------------- 99 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG----------------------------------------- 99 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-----------------------------------------
Confidence 36789999998 55555322 24666776533333321
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
-...|.|..+|+|++.++-.. ....|.|..+|..+.+...-. .......++++|||+++..+.+.
T Consensus 100 -~~~~n~i~wsP~G~~l~~~g~-----------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 100 -TQPRNTISWSPDGRFLVLAGF-----------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPR 166 (194)
T ss_pred -CCCceEEEECCCCCEEEEEEc-----------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccc
Confidence 123588999999985554332 123467888887755442222 23356899999999988877754
Q ss_pred ---CCEEEEEEeeCC
Q psy4771 268 ---SSRVHRYYLKGP 279 (337)
Q Consensus 268 ---~~~I~~~~~~g~ 279 (337)
.+.+..++..|.
T Consensus 167 ~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 167 LRVDNGFKIWSFQGR 181 (194)
T ss_pred eeccccEEEEEecCe
Confidence 355555665554
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.3 Score=43.97 Aligned_cols=179 Identities=16% Similarity=0.179 Sum_probs=98.4
Q ss_pred ccCCcceEEECCCCcEEEE-ECCCcEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcc------cccceee
Q psy4771 110 QCGRPLGIKFDKNGALHVA-DAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTG------QTEQLIS 181 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVa-d~~~gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~------~~~~v~~ 181 (337)
..++++.|.++++|...++ .....+..+|...|+. +.+.. ...| ++.+.+...-+.+ .++.|.-
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---kkyG-----~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---KKYG-----VDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---cccc-----ccEEEEecCCceEEEccCCCCCceEE
Confidence 4577899999999955555 4334688888766654 44433 2223 2333333333333 1123333
Q ss_pred ecc-------ccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEE
Q psy4771 182 MDT-------EIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVEL 254 (337)
Q Consensus 182 ~~~-------~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~ 254 (337)
+.- .+.| --...|.|.+.|-+..+++.+-. ..|..+|....+...+. .+..+.-+|+
T Consensus 85 Lsl~dNkylRYF~G-H~~~V~sL~~sP~~d~FlS~S~D--------------~tvrLWDlR~~~cqg~l-~~~~~pi~Af 148 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPG-HKKRVNSLSVSPKDDTFLSSSLD--------------KTVRLWDLRVKKCQGLL-NLSGRPIAAF 148 (311)
T ss_pred EEeecCceEEEcCC-CCceEEEEEecCCCCeEEecccC--------------CeEEeeEecCCCCceEE-ecCCCcceeE
Confidence 321 1111 12456888888877777766542 24555554433332222 2345566899
Q ss_pred ccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC--CCCCceeECCCCC-EEEEecCC
Q psy4771 255 SADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP--GLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 255 ~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~--g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+|+| .++++..++..|.-|++..-..+-.+.|.-+.+ ..=.+|.+.+||+ +.++...+
T Consensus 149 Dp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 149 DPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred CCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 9999 466666666699999986322233333332111 1235788888887 66665544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.088 Score=48.88 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=64.5
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee-EEE--eccc-------------cceeeEEEcc
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-KVL--IANL-------------HFANGVELSA 256 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-~~~--~~~~-------------~~p~gia~~~ 256 (337)
-+.+|++.++|.+|+++-.... ....-+|++++.+ |+. +.+ ...+ ....|+|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~--------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~ 156 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT--------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP 156 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC--------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC
Confidence 4679999889999999976410 0012378888876 433 222 1111 1345899999
Q ss_pred CCCEEEEEeCCC---------------CEEEEEEeeCCC--CCceeeeecC-----CCCCCCceeECCCCCEEEEecC
Q psy4771 257 DESFVIVAETMS---------------SRVHRYYLKGPK--QGKSEVFIDG-----LPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 257 dg~~lyva~~~~---------------~~I~~~~~~g~~--~~~~~~~~~~-----~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
||++||++.... .||++|+..... ..+...-.+. ....+..++.-++|+++|=...
T Consensus 157 dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 157 DGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred CCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 999888776543 467778765311 1111111121 0112556666778888876655
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.2 Score=47.21 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=44.3
Q ss_pred EEeeCCeEEEEecCcEEEEEeCCceeEEEe--cCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 68 VVKHKGDLYMGVDGGHILKLSGGKLVPVVK--LGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 68 i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
.++.++.+|+...+|.++.++..+.+.+-. ++. ... .+.+++ ++++||+.....++.+|.++|++.
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--------~~~---~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDE--------RLS---GGVGAD-GGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCC--------Ccc---cceEEc-CCEEEEEcCCCEEEEEECCCCcEe
Confidence 345788999888889999998633222211 111 111 234554 568999875556999999888776
Q ss_pred EEe
Q psy4771 146 QLI 148 (337)
Q Consensus 146 ~l~ 148 (337)
.-.
T Consensus 129 W~~ 131 (377)
T TIGR03300 129 WRA 131 (377)
T ss_pred eee
Confidence 543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.018 Score=54.32 Aligned_cols=146 Identities=17% Similarity=0.196 Sum_probs=91.9
Q ss_pred cCCcceEEECCCC-cEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 111 CGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 111 ~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
...|..+.+.|++ +++++-...+ |+.+|..++++.+-..
T Consensus 299 ~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------------------------------------- 339 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------------------------------------- 339 (503)
T ss_pred CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------------------------------
Confidence 3458889999998 8888865544 8999987776432221
Q ss_pred CCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-eEEEe-ccccceeeEEEccCCCEEEEEeC
Q psy4771 189 AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-NKVLI-ANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-~~~~~-~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.-+...+++.+-++|+=+++.+... +=+||-++. .- +.... .....--.+++.|+++ .+++++
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdk------------s~riWe~~~--~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs 404 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDK------------SVRIWENRI--PVPIKNIADPEMHTMPCLTLHPNGK-WFAAQS 404 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCc------------cEEEEEcCC--CccchhhcchhhccCcceecCCCCC-eehhhc
Confidence 1356688999999888666655421 113443331 11 11111 1122234688899985 888899
Q ss_pred CCCEEEEEEeeCC-CCCceeeeec-CCCCCCCceeECCCCCEEEEe
Q psy4771 267 MSSRVHRYYLKGP-KQGKSEVFID-GLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 267 ~~~~I~~~~~~g~-~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..|+|..|..... +....+.|.. ..+|++-.+.+.+||.+.++-
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 9999999987542 2333344433 246888888888888755444
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.36 Score=46.99 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=89.9
Q ss_pred CcceEEECCCCcEEEEECCC-cEEEEEc-CCCe-EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 113 RPLGIKFDKNGALHVADAYF-GLYKVNV-TTGQ-TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~-gv~~vd~-~~g~-~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
...+++|.++|...++-+.. .+...|. +.+. ++.+..
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g---------------------------------------- 244 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG---------------------------------------- 244 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC----------------------------------------
Confidence 35689999999877765443 3666666 3333 333322
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
-....+++++.++|++.++-.. ++.|..+|..+++...... .-..-+++++++|++.|+.+ ...
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~--------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d 309 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSD--------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYD 309 (456)
T ss_pred CCCceEEEEecCCCCEEEEecC--------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCC
Confidence 1234689999999987776654 4577777877776654444 34466889999999866666 558
Q ss_pred CEEEEEEeeCCCCCceeeeecC-CCCCCCceeECCCCC-EEEEecC
Q psy4771 269 SRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
+.|..+++......-...+... .+..-.-+.++++|. ++++.-.
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 8899999865431101122211 111125677888886 4444433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.63 Score=45.81 Aligned_cols=150 Identities=7% Similarity=0.014 Sum_probs=82.5
Q ss_pred CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccc
Q psy4771 73 GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~ 151 (337)
+.|.+...++.|..||......+..+. .......++++.++|.++++-...+ |..+|+.+++...-...
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~---------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~- 208 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIK---------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA- 208 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEc---------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec-
Confidence 356688889988888864333332221 1123467899999998777755554 78889877654322210
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
..+ .....+.+.+++...++-.... ..++.|..
T Consensus 209 --H~~-----------------------------------~~~~~~~w~~~~~~ivt~G~s~----------s~Dr~Vkl 241 (493)
T PTZ00421 209 --HAS-----------------------------------AKSQRCLWAKRKDLIITLGCSK----------SQQRQIML 241 (493)
T ss_pred --CCC-----------------------------------CcceEEEEcCCCCeEEEEecCC----------CCCCeEEE
Confidence 000 0122334445544443322110 12346666
Q ss_pred EcCCCCeeEE-Ee--ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 232 YNPKTKKNKV-LI--ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 232 ~d~~~~~~~~-~~--~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
+|..+..... .. +......-..+++|++.||++..+.+.|..|++...
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 7765432111 11 111122234678999988988777789999998754
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.16 Score=44.41 Aligned_cols=174 Identities=10% Similarity=0.067 Sum_probs=98.0
Q ss_pred EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCC
Q psy4771 77 MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDG 156 (337)
Q Consensus 77 ~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g 156 (337)
+...+..|-.|.........++ .+.....+.|.+.++++...+.....|+.+|..++.-..++. .+|
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTi---------qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t----~e~ 81 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTI---------QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT----FEG 81 (311)
T ss_pred eccCcceeeeeehhcCeEEEEE---------ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeE----Eec
Confidence 5566676666644222212122 134456788999999977777555668888887665444332 121
Q ss_pred CCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC
Q psy4771 157 AKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT 236 (337)
Q Consensus 157 ~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~ 236 (337)
.-+....+.+..+|+...|.+. +|.+-.+|...
T Consensus 82 ---------------------------------h~kNVtaVgF~~dgrWMyTgse--------------Dgt~kIWdlR~ 114 (311)
T KOG0315|consen 82 ---------------------------------HTKNVTAVGFQCDGRWMYTGSE--------------DGTVKIWDLRS 114 (311)
T ss_pred ---------------------------------cCCceEEEEEeecCeEEEecCC--------------CceEEEEeccC
Confidence 1123456777778874433332 34555555544
Q ss_pred CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 237 KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 237 ~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-........-.--|.|.+.|+...|++++. ++.|++.|+....- ..+..-+ ..-....+++++||...+|....
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c-~~~liPe-~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSC-THELIPE-DDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCcc-ccccCCC-CCcceeeEEEcCCCcEEEEecCC
Confidence 333333333344588999999888888885 46788888753211 1111111 11123567777777766666544
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.031 Score=54.28 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=81.4
Q ss_pred CCCCCccEEEcC-CCcEEEEcCCCCccC--ceeeeeecCCccEEEEcCCCC-------eeEEEe--------cc------
Q psy4771 190 KPQIPNSVTVDS-DGMVYWSDSSTKYKS--GLFEGLTSGSGRLIQYNPKTK-------KNKVLI--------AN------ 245 (337)
Q Consensus 190 ~~~~pn~v~vd~-~G~lyvtd~~~~~~~--~~~~~~~~~~G~v~~~d~~~~-------~~~~~~--------~~------ 245 (337)
+...|.++++.+ .|.+|++......+. .--.-....-|.|+++-+.++ +.+... +.
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 466799999998 477999877643210 000011344578888888765 333222 11
Q ss_pred ----ccceeeEEEccCCCEEEEEeCCCC--------EEEEEEeeCCCCCceeeeecCCC-CCCCceeECCCCC-EEEEec
Q psy4771 246 ----LHFANGVELSADESFVIVAETMSS--------RVHRYYLKGPKQGKSEVFIDGLP-GLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 246 ----~~~p~gia~~~dg~~lyva~~~~~--------~I~~~~~~g~~~~~~~~~~~~~~-g~Pdgi~~d~dG~-l~va~~ 311 (337)
|..|.+|+|++.|+ ||+++-+.. .+..+...+.+.++...|..+-. ..-.|.++.+||+ +||+.
T Consensus 495 ~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v- 572 (616)
T COG3211 495 NANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV- 572 (616)
T ss_pred ccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe-
Confidence 45599999999996 777664432 12222223445666666655322 2457999999986 99999
Q ss_pred CCCCCchhh------ccccCCCcc
Q psy4771 312 CPVEQPSEQ------AGNIRDPAG 329 (337)
Q Consensus 312 ~~~~~p~~~------~~~~~~p~~ 329 (337)
+||-.. ..-...|.+
T Consensus 573 ---QHPGe~~~~~~~~~~s~wP~~ 593 (616)
T COG3211 573 ---QHPGETGTTTNEPLASSWPDG 593 (616)
T ss_pred ---cCCCCcccccccCccCcCCCC
Confidence 555333 344555554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.079 Score=50.47 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=40.8
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
+.++.+|+...+|+++.++..+.+.+-+. ..+.+..+.+ .+|+||+++....++.+|.++|+..
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~-----------~~~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKR-----------EYGSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEee-----------cCCCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 35788997667888999987333222111 0122233444 3568999986666999999888653
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.064 Score=50.00 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=90.1
Q ss_pred CccCCcceEEECCCCcEEEEECCCcEEE-EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAYFGLYK-VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~~gv~~-vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+...+..-++|.|+|+...+..+..-++ .|..++....+. +|
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------EG------------------------------- 301 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------EG------------------------------- 301 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhHhh------cc-------------------------------
Confidence 3446777899999998888866644332 355444322111 12
Q ss_pred CCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-eEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 188 GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-NKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
--....++++.+||.+..|... +.-|+||-.. +|. +-.+......-.+|+|+|+| +...+-+
T Consensus 302 --Hs~~v~~iaf~~DGSL~~tGGl------------D~~~RvWDlR--tgr~im~L~gH~k~I~~V~fsPNG-y~lATgs 364 (459)
T KOG0272|consen 302 --HSKGVFSIAFQPDGSLAATGGL------------DSLGRVWDLR--TGRCIMFLAGHIKEILSVAFSPNG-YHLATGS 364 (459)
T ss_pred --cccccceeEecCCCceeeccCc------------cchhheeecc--cCcEEEEecccccceeeEeECCCc-eEEeecC
Confidence 1234688999999998776653 3346766543 453 44455556677899999999 6777777
Q ss_pred CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC-CCCEEEEec
Q psy4771 267 MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-KGNFLVSLV 311 (337)
Q Consensus 267 ~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~-dG~l~va~~ 311 (337)
..+.+.+.++..... .-+ +......-..++.++ .|++.++..
T Consensus 365 ~Dnt~kVWDLR~r~~--ly~-ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSE--LYT-IPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred CCCcEEEeeeccccc--cee-cccccchhhheEecccCCeEEEEcc
Confidence 788888888765322 111 111112457888887 566666554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.22 Score=47.41 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=44.0
Q ss_pred EeeCCeEEEEecCcEEEEEeCCceeEEEe--cCccccCccccCccCC-cceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSGGKLVPVVK--LGKDCYGFKYEQQCGR-PLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~-P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
++.++.+|+...++.++.++..+.+.+-+ +... .+......... -.+++++ ++++|+.+....++.+|.++|+..
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEK-DGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCc-ccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCc
Confidence 44789999888889999998633222211 1110 00000000000 1234553 468999875455999999888765
Q ss_pred EEe
Q psy4771 146 QLI 148 (337)
Q Consensus 146 ~l~ 148 (337)
.-.
T Consensus 144 W~~ 146 (394)
T PRK11138 144 WQT 146 (394)
T ss_pred ccc
Confidence 543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.11 Score=51.88 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=67.0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc-eeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF-ANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~-p~gia~~~dg~~lyva~~~~~ 269 (337)
++-.+.+.+.|+.+...|.++.+ .+-.+|..+|...++..|-.. -..++++|+|++| ++-...+
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~--------------tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~ 599 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDR--------------TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDG 599 (707)
T ss_pred ccccceEEECCcccccccCCCCc--------------eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCC
Confidence 44467788999877655654422 444455555655555555443 4789999999644 4444567
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.|..+|+.++.. ...+.++ .+..+.|.+..||++.|+....
T Consensus 600 ~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 600 LIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred cEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCEEEecCCC
Confidence 888888865322 1122222 4557889999999999888766
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.51 Score=42.31 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=100.3
Q ss_pred EEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
+..+ +|+.|.++..+....-||-++.+.+..|. ...+...+|.+.| +++.||+-+-.. ....|...+.
T Consensus 150 cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~---------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 150 CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH---------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred EEEEcCCCceEecCCCceEEEEEcccceEEEEec---------CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 3444 78889999999999999875554444443 2335577899988 789999964433 4445655454
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
..+-.. |. -.-.|.|.+-|+|.-+.|-+...
T Consensus 221 c~qtF~------gh---------------------------------esDINsv~ffP~G~afatGSDD~---------- 251 (343)
T KOG0286|consen 221 CVQTFE------GH---------------------------------ESDINSVRFFPSGDAFATGSDDA---------- 251 (343)
T ss_pred eeEeec------cc---------------------------------ccccceEEEccCCCeeeecCCCc----------
Confidence 333221 11 12368888999988777665421
Q ss_pred cCCccEEEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEeCCCCEEEEEEee-CCCCCceeeeecCCCCCCCceeE
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAETMSSRVHRYYLK-GPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~-g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
.-++|-+..+ .++...... ....+.++|+..|+.|| +-....++.+.+.- +. ...++.. ..+....+.+
T Consensus 252 --tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLf-agy~d~~c~vWDtlk~e---~vg~L~G-HeNRvScl~~ 323 (343)
T KOG0286|consen 252 --TCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLF-AGYDDFTCNVWDTLKGE---RVGVLAG-HENRVSCLGV 323 (343)
T ss_pred --eeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEE-eeecCCceeEeeccccc---eEEEeec-cCCeeEEEEE
Confidence 1233332221 233222111 23458999999997555 44667777777753 22 1222222 2334556666
Q ss_pred CCCCC
Q psy4771 301 DSKGN 305 (337)
Q Consensus 301 d~dG~ 305 (337)
.+||.
T Consensus 324 s~DG~ 328 (343)
T KOG0286|consen 324 SPDGM 328 (343)
T ss_pred CCCCc
Confidence 66665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.18 Score=43.14 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=63.3
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--CCE
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM--SSR 270 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~--~~~ 270 (337)
..+++..|+|+ +.+.... ....+..||.+...+..+. -...|.|.++|+|++|.++..+ .+.
T Consensus 62 I~~~~WsP~g~~favi~g~-------------~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS-------------MPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred eEEEEECcCCCEEEEEEcc-------------CCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 78999999986 4444321 1226666666533332222 2356889999999999888755 356
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|..++.+. .+.+..........++.++||+++++....
T Consensus 127 l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 127 LEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred EEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEec
Confidence 88888652 222222122236789999999988877543
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.082 Score=49.84 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=87.8
Q ss_pred ccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cccceeeeccc
Q psy4771 110 QCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTEQLISMDTE 185 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~~v~~~~~~ 185 (337)
.-+...+++|+++| .||++..+..|+.+|.................| ..++.+.+|.++ +..+|..+-+.
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g------ts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG------TSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce------eeeeecCCCceEEeccCcceEEEecc
Confidence 34667799999999 667665445599999876654433322122222 346777888887 44455555431
Q ss_pred ---cCCC---C-------CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeE
Q psy4771 186 ---IDGA---K-------PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGV 252 (337)
Q Consensus 186 ---~~~~---~-------~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gi 252 (337)
+.+. + ....+++.+.+|+.|..-.+... .+. ..+.+-++-.||+--|.. ...+.++..+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-kna-lrLVHvPS~TVFsNfP~~------n~~vg~vtc~ 488 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNA-LRLVHVPSCTVFSNFPTS------NTKVGHVTCM 488 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccc-eEEEeccceeeeccCCCC------CCcccceEEE
Confidence 1111 1 13467888888877543222211 011 122344555555533321 2346688999
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 253 ELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 253 a~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
+|+|.+.++-|.+. .++|..|.+
T Consensus 489 aFSP~sG~lAvGNe-~grv~l~kL 511 (514)
T KOG2055|consen 489 AFSPNSGYLAVGNE-AGRVHLFKL 511 (514)
T ss_pred EecCCCceEEeecC-CCceeeEee
Confidence 99999887777764 456666654
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.19 Score=46.68 Aligned_cols=149 Identities=14% Similarity=0.213 Sum_probs=91.8
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEecc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~ 150 (337)
.+.|.+...++.|.-|+-++...+..+. ....-..+.|+.+|.++++... ..|+.+|+.++++..-..
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~----------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~- 212 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD----------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV- 212 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC----------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-
Confidence 5566666777878888765544443331 2234568999999999888655 359999998887655442
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~ 230 (337)
...| ..+.-+.+-.+|.++.|-.+.- ..-.+.
T Consensus 213 --~heG-----------------------------------~k~~Raifl~~g~i~tTGfsr~-----------seRq~a 244 (472)
T KOG0303|consen 213 --AHEG-----------------------------------AKPARAIFLASGKIFTTGFSRM-----------SERQIA 244 (472)
T ss_pred --cccC-----------------------------------CCcceeEEeccCceeeeccccc-----------ccccee
Confidence 1222 2244455666777555544321 011333
Q ss_pred EEcCCCCeeEEEeccccceeeEEE---ccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 231 QYNPKTKKNKVLIANLHFANGVEL---SADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 231 ~~d~~~~~~~~~~~~~~~p~gia~---~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
..|+++-+.-.....+...|||-+ ++|.+.||++-.+.+.|.-|.+...
T Consensus 245 Lwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 245 LWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 444443322233344555677653 5888899999999999999988653
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.49 Score=47.96 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=103.6
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEE-EcCCCeEEEEec
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKV-NVTTGQTEQLIS 149 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~v-d~~~g~~~~l~~ 149 (337)
-++..+.+..+|.|-+++.........+|.. ....+...|+++|.-+++.|+....|+.++ |.+++....-.+
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~------~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS------PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeeecccccC------ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 4677778999999999987443333344421 122244679999999999999777886554 544333211111
Q ss_pred cccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-------cCCCCCCCCccEEEcCCCcEEEEcCCCCccCce
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE-------IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~-------~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~ 218 (337)
-|. -+..+.....-.++ .+-+|..++.. +.| -.+..|++++++||+..++-..
T Consensus 533 -----l~~---~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasm------- 596 (910)
T KOG1539|consen 533 -----LGS---SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASM------- 596 (910)
T ss_pred -----cCC---CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeec-------
Confidence 111 01222222211221 33355544432 222 1356899999999985544432
Q ss_pred eeeeecCCccEEEEcCCCCeeEEEeccc---cceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKNKVLIANL---HFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~~~~~~~~---~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
++.|..+|..++.. .+++ .-+..+.++|+|++|-.+-.+.+.|+-+.-
T Consensus 597 -------D~tIr~wDlpt~~l---ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 597 -------DSTIRTWDLPTGTL---IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred -------CCcEEEEeccCcce---eeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 45788888777653 3333 234678899999998888888777776653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.45 Score=46.79 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=45.3
Q ss_pred CCccEEEEcCCCCeeEEEecccc--------ce---eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLH--------FA---NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~--------~p---~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g 293 (337)
..|.|+.+|..+|+..--.+... .| ..+++ .++.||+.+ ..+.|+.++.+.++..-...+......
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~~~~~~a 440 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATTGKELWKFRTPSGIQA 440 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCCCceeeEEECCCCceE
Confidence 46788888888887532221110 11 12333 345788877 467899998754322111111111111
Q ss_pred CCCceeECCCCCEEEEecCC
Q psy4771 294 LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 294 ~Pdgi~~d~dG~l~va~~~~ 313 (337)
-| +....+|++||+...+
T Consensus 441 ~P--~~~~~~g~~yv~~~~g 458 (488)
T cd00216 441 TP--MTYEVNGKQYVGVMVG 458 (488)
T ss_pred cC--EEEEeCCEEEEEEEec
Confidence 12 3335579999999777
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.21 Score=45.99 Aligned_cols=148 Identities=19% Similarity=0.202 Sum_probs=93.2
Q ss_pred cceEEECCCCcEEEEECCC--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
...|...+||..+++.+.. .|+..|+++|.-..+... .+
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------------------------------gl 238 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---------------------------------------GL 238 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------------------------------CC
Confidence 4579999999888886653 388888888876666521 23
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
....-+..+|||..+|+..-.. .=+|+.-+ +....+...-+-..-.+-+++|+|++|.++-.+..+|
T Consensus 239 gg~slLkwSPdgd~lfaAt~da------------vfrlw~e~-q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDA------------VFRLWQEN-QSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred CceeeEEEcCCCCEEEEecccc------------eeeeehhc-ccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 3455678899998665543210 00333211 1122222232333667889999999999999999999
Q ss_pred EEEEeeCCC---C--C---ceeeeec--------C---CCCCCCceeECCCCCEEEEecCC
Q psy4771 272 HRYYLKGPK---Q--G---KSEVFID--------G---LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 272 ~~~~~~g~~---~--~---~~~~~~~--------~---~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++...++.- . + .....+| + .-|-+.-|+-|+.|...+..+.+
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 998886521 0 0 1122222 0 12347789999999877777766
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.15 Score=45.52 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=39.4
Q ss_pred EEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCe--eEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 197 VTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK--NKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 197 v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
-++++||. ||.|+...+ ...|-|=.||...+- +.......-.|+.+.+.+||+++.|++.
T Consensus 119 Gvfs~dG~~LYATEndfd----------~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDFD----------PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCCC----------CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 44788997 888887643 233555555544321 2222333457999999999999999886
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.3 Score=44.27 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=84.6
Q ss_pred ccEEEe-e--CCeEEEEecCcEEEEEeCC--ce--eE----EEecCccccCccccCccCCcceEEECCCCc-EEEEECCC
Q psy4771 65 PEAVVK-H--KGDLYMGVDGGHILKLSGG--KL--VP----VVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF 132 (337)
Q Consensus 65 P~~i~~-~--~g~ly~d~~~g~I~~~~~~--~~--~~----~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~ 132 (337)
-.++++ . +..|.+...++.|..|+.. .. .. +..+. ........++++|++. ++++-+..
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~---------gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK---------GHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee---------cCCCcEEEEEECCCCCeEEEEEeCC
Confidence 345566 2 3456688889988888752 11 10 11111 1224467899999985 44443333
Q ss_pred -cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCC
Q psy4771 133 -GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 133 -gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~ 211 (337)
.|...|..+++...-.. . ......++++++|.+.++...
T Consensus 148 gtIrIWDl~tg~~~~~i~----~------------------------------------~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN----M------------------------------------PKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred CeEEEEECCCCcEEEEEe----c------------------------------------CCcEEEEEECCCCCEEEEEec
Confidence 47778887665332211 0 123578899999987765432
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce---ee---EEEccCCCEEEEEeCCC---CEEEEEEeeC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA---NG---VELSADESFVIVAETMS---SRVHRYYLKG 278 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p---~g---ia~~~dg~~lyva~~~~---~~I~~~~~~g 278 (337)
++.|..+|+.+++...-..+.... .. ..+++|++.|..+-... +.|..+++..
T Consensus 188 --------------D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 188 --------------GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred --------------CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 347888888877653322221111 11 12357877666655443 3687788753
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.4 Score=45.18 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC
Q psy4771 122 NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS 201 (337)
Q Consensus 122 ~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~ 201 (337)
++.+|++.....++.+|.++|+...-.. .......+++
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~-----------------------------------------~~~~~~p~~~- 278 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRD-----------------------------------------ASSYQGPAVD- 278 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeec-----------------------------------------cCCccCceEe-
Confidence 4688988765669999998886544321 0112233333
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
++++|+++. +|.|+.+|.++|+..--...+. .....++ .++.||+.+. .+.|+.++.+.
T Consensus 279 ~~~vyv~~~---------------~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~-~G~l~~~d~~t 339 (377)
T TIGR03300 279 DNRLYVTDA---------------DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF-EGYLHWLSRED 339 (377)
T ss_pred CCEEEEECC---------------CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC-CCEEEEEECCC
Confidence 467887763 3578888887776432111111 1111122 2447888774 46788888653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.19 Score=47.78 Aligned_cols=111 Identities=11% Similarity=0.160 Sum_probs=68.0
Q ss_pred cCccCCcceEEECCCCc-EEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeecccc
Q psy4771 108 EQQCGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEI 186 (337)
Q Consensus 108 ~~~~~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~ 186 (337)
++.+++-..+.++++|. +.|++....++.+|.++|+++.+-.+
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS------------------------------------ 441 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS------------------------------------ 441 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc------------------------------------
Confidence 35567777899999996 66665334599999999988777542
Q ss_pred CCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 187 DGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 187 ~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.-....+++++++++...=..... .+ .-.|..+|.+++++-.+...-.+-..=|++||++.||....
T Consensus 442 ---~~~lItdf~~~~nsr~iAYafP~g----y~------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 442 ---EYGLITDFDWHPNSRWIAYAFPEG----YY------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ---ccceeEEEEEcCCceeEEEecCcc----ee------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 122367888888876321111111 11 11455566666655433333333344588999999998764
Q ss_pred C
Q psy4771 267 M 267 (337)
Q Consensus 267 ~ 267 (337)
.
T Consensus 509 R 509 (668)
T COG4946 509 R 509 (668)
T ss_pred c
Confidence 3
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.2 Score=52.98 Aligned_cols=176 Identities=15% Similarity=0.215 Sum_probs=109.5
Q ss_pred CCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEEcCCCeEEEEe
Q psy4771 72 KGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLI 148 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~~~~l~ 148 (337)
++.+| ++....+|.+............+ .....|.|+++|--+ ++|.+|.... +...+.++.....++
T Consensus 448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~~---------~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~ 518 (877)
T KOG1215|consen 448 NNRIYWADLSDEKICRASQDGSSECELCG---------DGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLV 518 (877)
T ss_pred CCEEEEEeccCCeEeeeccCCCccceEec---------cCccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEE
Confidence 55666 89989988887652221111111 233568999999876 9999997755 444454444434444
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSG 227 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G 227 (337)
.. .+..|..+++++ .|.+|++|+....
T Consensus 519 ~~---------------------------------------~l~~~r~~~v~p~~g~~~wtd~~~~~------------- 546 (877)
T KOG1215|consen 519 SK---------------------------------------DLDLPRSIAVDPEKGLMFWTDWGQPP------------- 546 (877)
T ss_pred ec---------------------------------------CCCCccceeeccccCeeEEecCCCCc-------------
Confidence 31 235688999999 5779999997420
Q ss_pred cEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEEEeCCCC-EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 228 RLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSS-RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~-~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
++-+-..+.-..+.+ ..+...|+|++++--.+.+|.++.... .|.+...+|..- ++........|.++++-.+.-
T Consensus 547 ~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r---~~~~~~~~~~p~~~~~~~~~i 623 (877)
T KOG1215|consen 547 RIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR---RVVDSEDLPHPFGLSVFEDYI 623 (877)
T ss_pred hhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCce---EEeccccCCCceEEEEeccee
Confidence 222222222222222 334789999999977778999999888 788888876422 122222223588998876654
Q ss_pred EEEEec
Q psy4771 306 FLVSLV 311 (337)
Q Consensus 306 l~va~~ 311 (337)
+|.-..
T Consensus 624 yw~d~~ 629 (877)
T KOG1215|consen 624 YWTDWS 629 (877)
T ss_pred EEeecc
Confidence 554443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.4 Score=43.46 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=87.4
Q ss_pred cEEEe-e-CC-eEEEEecCcEEEEEeC--Cce-----eEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-
Q psy4771 66 EAVVK-H-KG-DLYMGVDGGHILKLSG--GKL-----VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG- 133 (337)
Q Consensus 66 ~~i~~-~-~g-~ly~d~~~g~I~~~~~--~~~-----~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g- 133 (337)
.++++ . ++ .|.+...++.|..|+. +.. ..+..+. ........+++.+++ +++++-...+
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~---------gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ---------GHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec---------CCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 35555 2 44 5668888998888874 211 1111111 122446689999985 5666544444
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
|...|.++++...... + .....+++++.++|.+.++...
T Consensus 150 VrIWDl~tg~~~~~l~------~---------------------------------h~~~V~sla~spdG~lLatgs~-- 188 (493)
T PTZ00421 150 VNVWDVERGKAVEVIK------C---------------------------------HSDQITSLEWNLDGSLLCTTSK-- 188 (493)
T ss_pred EEEEECCCCeEEEEEc------C---------------------------------CCCceEEEEEECCCCEEEEecC--
Confidence 7778887665433221 1 1123678999999987665543
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeC---CCCEEEEEEee
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAET---MSSRVHRYYLK 277 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~---~~~~I~~~~~~ 277 (337)
+|.|..+|+.+++...-..+.. ....+.+.++++.+..+.. ..+.|..+++.
T Consensus 189 ------------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 189 ------------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred ------------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 4578888887776432222211 2345677777766655432 24678888875
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.87 Score=40.57 Aligned_cols=194 Identities=10% Similarity=0.044 Sum_probs=112.4
Q ss_pred CceeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY 131 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~ 131 (337)
.++.+.|--.--.+++. .+|... +...++.+..||....+....|- .......++++++|.+-+|+-+.
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~---------GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV---------GHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE---------ecCCceEEEEecCCCceeecCCC
Confidence 34444552223345555 566555 88888877778863322222221 12234779999999988888654
Q ss_pred Cc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEc
Q psy4771 132 FG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSD 209 (337)
Q Consensus 132 ~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd 209 (337)
.. +...+..++..-++.. .+ .-.+.+.+.+.|+. +.++..
T Consensus 126 DkTiklwnt~g~ck~t~~~-----~~---------------------------------~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHE-----DS---------------------------------HREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred cceeeeeeecccEEEEEec-----CC---------------------------------CcCcEEEEEEcCCCCCcEEEE
Confidence 33 6666766554444432 11 13467888898875 444444
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
.+. ++.|-..|.++-+.+... ..-.+-+-++++|||. +-.+-...+.++-.+++.++. ...+-
T Consensus 168 ~s~-------------DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~ 231 (315)
T KOG0279|consen 168 ASW-------------DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLE 231 (315)
T ss_pred ccC-------------CceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEecc
Confidence 432 236666776665554333 3345778999999995 777666677888888864321 11111
Q ss_pred cCCCCCCCceeECCCCCEEEEecCC
Q psy4771 289 DGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 289 ~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
. .-....+++.++ ++|.+....
T Consensus 232 a--~~~v~sl~fspn-rywL~~at~ 253 (315)
T KOG0279|consen 232 A--FDIVNSLCFSPN-RYWLCAATA 253 (315)
T ss_pred C--CCeEeeEEecCC-ceeEeeccC
Confidence 1 012456777765 466666544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.77 Score=46.18 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=62.3
Q ss_pred ccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 195 NSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 195 n~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..-.+++||. ||+....... .+.......+.++.++.++++... ..-.....+++++||++|.+.-. ++|++
T Consensus 400 t~PsWspDG~~lw~v~dg~~~---~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~V 472 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNTV---VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVYL 472 (591)
T ss_pred CCceECCCCCceEEEecCcce---EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEEE
Confidence 3446888864 8887543210 011112345788877777666543 11224788999999999877663 47777
Q ss_pred ---EEeeCCC--CCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 274 ---YYLKGPK--QGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 274 ---~~~~g~~--~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.+.+++. ++....+...+...+..+.--.++.|.|+..
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~ 515 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS 515 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec
Confidence 3323321 2222223333333346677777788777654
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.5 Score=42.27 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=40.4
Q ss_pred ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
....|+.+++|..+..+..+...-..-+.++++|||.+|-|.. ..+.|+.|.++.
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVSA 478 (626)
T ss_pred eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEECC
Confidence 4567889999988766655555555668899999998777665 457788888763
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.3 Score=45.88 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=85.7
Q ss_pred EEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC-
Q psy4771 67 AVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG- 142 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g- 142 (337)
+.++ .||+|| ++..++.+-.|+......+++|+.. -+--..|.|..+|-..++....+ |..+|...-
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh---------t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH---------TGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC---------CCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 4445 588888 8888886666665433345555421 23346899998884444444455 888886421
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
.+.++.- . .....+.+.+|..|.....-.. .
T Consensus 423 n~kt~~l----~-----------------------------------~~~~v~s~~fD~SGt~L~~~g~-~--------- 453 (506)
T KOG0289|consen 423 NFKTIQL----D-----------------------------------EKKEVNSLSFDQSGTYLGIAGS-D--------- 453 (506)
T ss_pred ccceeec----c-----------------------------------ccccceeEEEcCCCCeEEeecc-e---------
Confidence 2222221 0 1224688999998874433322 1
Q ss_pred ecCCccEEEEcCCCCeeEEEe---ccccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI---ANLHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~---~~~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
=+||.++-.+.+.+.+. +.....+|+.|..+. -|++.++..+++++
T Consensus 454 ----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 454 ----LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRL 502 (506)
T ss_pred ----eEEEEEecccccceeeehhhhcccccceeeecccc--eEEeeccchhheEE
Confidence 17888886666654433 334467899998664 56666666676654
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.82 Score=40.17 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=83.1
Q ss_pred CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 72 KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+..+.++..++.|-.||- ++......+ -..+..+.+.++|+++....+.+|...|+++- ..+..
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf--~~lKs 220 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEF------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF--GLLKS 220 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEec------------CCCCcceeeccCCCEEEEecCceeEEeccccc--cceee
Confidence 455555566666666664 332221111 23477899999998877754456777777532 12211
Q ss_pred cccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
. .+|+.+ +.....|+-.+||+-.. .+.+
T Consensus 221 ~---------k~P~nV-----------------------------~SASL~P~k~~fVaGge--------------d~~~ 248 (334)
T KOG0278|consen 221 Y---------KMPCNV-----------------------------ESASLHPKKEFFVAGGE--------------DFKV 248 (334)
T ss_pred c---------cCcccc-----------------------------ccccccCCCceEEecCc--------------ceEE
Confidence 0 023322 33335566678877643 3489
Q ss_pred EEEcCCCCeeEEEe-cc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 230 IQYNPKTKKNKVLI-AN-LHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 230 ~~~d~~~~~~~~~~-~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
|+||-.+|+-.... .+ +.--..+.++|||. +|.+-+..+.|.-...
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQT 296 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEe
Confidence 99999888654442 33 34457899999995 9988877776654443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.52 Score=46.33 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=45.3
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+.++.+|+...+++++.+|..+.+..-++... .............++++..++++|+.+....|+.+|.++|+...-..
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPK-LPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCC-CCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 46889998878899999987332222111100 00000000001124455444799998765569999999998776553
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.7 Score=40.99 Aligned_cols=143 Identities=12% Similarity=0.202 Sum_probs=82.2
Q ss_pred cceEEECCCCcEEEEECCCcEEEE-EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKV-NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~v-d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
.+++...+.|.-+++.+..+-|.+ |..+|.....+.. ++ .--
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~----~~---------------------------------s~v 348 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD----ET---------------------------------SDV 348 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee----cc---------------------------------ccc
Confidence 468888888876666555665554 4444443333321 01 011
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc-cceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-HFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
.....++.|||.|+.+-.. +|.|-.+|.+.+....-..+- .--..|+|+.+| +..++......|
T Consensus 349 ~~ts~~fHpDgLifgtgt~--------------d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V 413 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTP--------------DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSV 413 (506)
T ss_pred eeEEeeEcCCceEEeccCC--------------CceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeE
Confidence 2467889999998876654 345555665544321111221 223679999888 666667777779
Q ss_pred EEEEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEec
Q psy4771 272 HRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 272 ~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
..+|+.-. .+...+.- ...+ ...+.+|..|.+.+...
T Consensus 414 ~lwDLRKl--~n~kt~~l~~~~~-v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 414 KLWDLRKL--KNFKTIQLDEKKE-VNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEehhh--cccceeecccccc-ceeEEEcCCCCeEEeec
Confidence 99998532 23333321 1111 45688898888766663
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.1 Score=40.95 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=79.6
Q ss_pred CcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 113 RPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
+.+++..+++|+++|+-.. +.|++||+++|++....... ..+. .. .....+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~--~~~d-------f~-------------------~~~~~f 196 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK--RNSD-------FT-------------------LPATNF 196 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC--CCCc-------cc-------------------ccCCcE
Confidence 4578999999999988644 34999999999887765421 0000 00 001124
Q ss_pred CCCccEEEc----CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee--------eEEEccCCC
Q psy4771 192 QIPNSVTVD----SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN--------GVELSADES 259 (337)
Q Consensus 192 ~~pn~v~vd----~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~--------gia~~~dg~ 259 (337)
..-++..+- .+++|-+-|..... ........|+++.+|+.+.+++.+......|. .+..-|+|
T Consensus 197 ~~QHdar~~~~~~~~~~IslFDN~~~~----~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nG- 271 (299)
T PF14269_consen 197 SWQHDARFLNESNDDGTISLFDNANSD----FNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNG- 271 (299)
T ss_pred eeccCCEEeccCCCCCEEEEEcCCCCC----CCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCC-
Confidence 444555555 56666666663210 01123356799999999776654432221222 34455666
Q ss_pred EEEEEeCCCCEEEEEEeeC
Q psy4771 260 FVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g 278 (337)
.++|++....++..|+.+|
T Consensus 272 n~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 272 NVLIGWGNNGRISEFTPDG 290 (299)
T ss_pred CEEEecCCCceEEEECCCC
Confidence 4888888888888887665
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.057 Score=49.74 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=61.7
Q ss_pred CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC---------EEEE
Q psy4771 203 GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS---------RVHR 273 (337)
Q Consensus 203 G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~---------~I~~ 273 (337)
.++||.|.... ...++++.+|.+++++.=+.+....++ ++++||++.+|++++.=. -|..
T Consensus 3 ~rvyV~D~~~~----------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~ 71 (342)
T PF06433_consen 3 HRVYVQDPVFF----------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEI 71 (342)
T ss_dssp TEEEEEE-GGG----------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cEEEEECCccc----------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEE
Confidence 37999998532 124699999999998766666666666 778999999999997522 2333
Q ss_pred EEeeCCCCCceeeeecCC-----CCCCCceeECCCCC-EEEEecCC
Q psy4771 274 YYLKGPKQGKSEVFIDGL-----PGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~~~-----~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
|+.+.- .-..++.+... -.++..+++..||+ +||....+
T Consensus 72 ~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 72 WDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred EecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 443221 01123322211 12467888998997 89988877
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.2 Score=40.44 Aligned_cols=224 Identities=16% Similarity=0.240 Sum_probs=105.8
Q ss_pred cEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCc-ceEEECCCCcEEEEECC-CcEEEEEcCC
Q psy4771 66 EAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRP-LGIKFDKNGALHVADAY-FGLYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P-~Gl~~d~~G~lyVad~~-~gv~~vd~~~ 141 (337)
+++.+ ..|.+. ++..+|+++-||-.+...-..++.. -+| ..+++.++|+..++.+. ..+...|...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH----------~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH----------VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc----------ccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 44455 455555 9999999999986432211112211 233 48999999988888654 3477777765
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCc-c
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY-K 215 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~-~ 215 (337)
|....-+....+.-+- .+.|.+ +++.+ ..-.++.+.+.. -.-+..|++|.+=.+.+...+ +
T Consensus 97 gs~l~rirf~spv~~~-q~hp~k-----~n~~va~~~~~sp~vi~~s~~~-------h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGA-QWHPRK-----RNKCVATIMEESPVVIDFSDPK-------HSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred CCceeEEEccCcccee-eecccc-----CCeEEEEEecCCcEEEEecCCc-------eeeccCCCccccccccccccccC
Confidence 5433222211111110 122222 11221 111222222100 011112223332222221111 1
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC----CCCCceeee--
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETMSSRVHRYYLKG----PKQGKSEVF-- 287 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g----~~~~~~~~~-- 287 (337)
.+-+.+.++..|.+..||..+-+...... ....-..|.++..|+++. .++...-|..|++.. ++.+..+.-
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHH
Confidence 12233345667899999977654422211 123445788888887554 455556677777652 122222210
Q ss_pred -ecCCCCCC-CceeECCCCCEEEEecCC
Q psy4771 288 -IDGLPGLP-DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 288 -~~~~~g~P-dgi~~d~dG~l~va~~~~ 313 (337)
-+-..-.+ ..++++.+|-+.+|....
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~ 270 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSAR 270 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEecccc
Confidence 01000112 357788888666665543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.4 Score=43.77 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=45.0
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccC-cc-CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQ-QC-GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.++.+|+...+++|+.+|..+.+.+-++........... .+ ....|+++. ++++|++.....++.+|.++|++..-
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4689999877788899998743322222110000000000 00 012356664 46899987656799999999987654
Q ss_pred e
Q psy4771 148 I 148 (337)
Q Consensus 148 ~ 148 (337)
.
T Consensus 146 ~ 146 (527)
T TIGR03075 146 K 146 (527)
T ss_pred c
Confidence 3
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.4 Score=45.24 Aligned_cols=144 Identities=12% Similarity=0.148 Sum_probs=84.3
Q ss_pred EeeCCeEEEEecCcEEEEEeC--Ccee-EEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSG--GKLV-PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQT 144 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~--~~~~-~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~ 144 (337)
+...+.+.+++.++.|.++.- +... .++.|. -.-..++++.+|...++-+. ..|-.++.++...
T Consensus 63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft------------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT------------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ 130 (933)
T ss_pred eecccceEEeeccceEEEeeCCCCCccceeeeee------------ccceEEEEecCCcEEEeecCceeEEEEeccccch
Confidence 333444447888888888753 2211 122221 11347899999977777543 4566676654433
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeec
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~ 224 (337)
..... ...+ ..-++..+|+|++..+.+
T Consensus 131 ~~~lr---gh~a------------------------------------pVl~l~~~p~~~fLAvss-------------- 157 (933)
T KOG1274|consen 131 EKVLR---GHDA------------------------------------PVLQLSYDPKGNFLAVSS-------------- 157 (933)
T ss_pred heeec---ccCC------------------------------------ceeeeeEcCCCCEEEEEe--------------
Confidence 33222 1122 135778888887654433
Q ss_pred CCccEEEEcCCCCeeEEEecccc---------ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLH---------FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~---------~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+|.|..+|.+++.......++. .-.-++|+|++.++.+.-. .+.|..|+.++
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKG 219 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCC
Confidence 35788888877776544443321 2245789999766665543 67999998876
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.44 Score=44.89 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=50.8
Q ss_pred cEEEEcCCCCeeEEEe-------ccccceeeEEEc--c-CCCEEEEEeCCCCEEEEEEeeCCCCCc-----eeeeecCCC
Q psy4771 228 RLIQYNPKTKKNKVLI-------ANLHFANGVELS--A-DESFVIVAETMSSRVHRYYLKGPKQGK-----SEVFIDGLP 292 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~-------~~~~~p~gia~~--~-dg~~lyva~~~~~~I~~~~~~g~~~~~-----~~~~~~~~~ 292 (337)
++|++|++++.++.+. ..+.-+.|+|+- + +|+...+.....+++..|.+.....+. .+.|. ++
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CC
Confidence 6889998877765443 234558899985 2 454333334445789999886322222 23332 45
Q ss_pred CCCCceeECCC-CCEEEEecCC
Q psy4771 293 GLPDNVKRDSK-GNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~d-G~l~va~~~~ 313 (337)
..+.|+++|.+ |.||++.-..
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~ 229 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDV 229 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTT
T ss_pred CcceEEEEecccCCEEEecCcc
Confidence 67999999976 6799988554
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.11 Score=48.84 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=60.4
Q ss_pred eEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIP 194 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~p 194 (337)
|..+.++. .+|.......|+++|.++++.+.+... |...+ .-
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~-----------p~~~~--------------------------g~ 127 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV-----------PDDWK--------------------------GY 127 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-------------TTEE--------------------------EE
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC-----------Ccccc--------------------------cc
Confidence 44555555 665554457799999999888777652 11111 00
Q ss_pred ccEEEcCCCcEEEEcCCCC--c---c--Cceeee-eecCCccEEEEcCCCCeeEEEeccccceeeEEEcc-CCCEEEEEe
Q psy4771 195 NSVTVDSDGMVYWSDSSTK--Y---K--SGLFEG-LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA-DESFVIVAE 265 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~~--~---~--~~~~~~-~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyva~ 265 (337)
-...+++|++.++.....+ + . .....+ ...+..+|+++|.++|+.+++...-.+-+=+.++| |...|.+|-
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH 207 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH 207 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEec
Confidence 1122344565443322111 1 0 011111 24566799999999999988887655555555664 333444444
Q ss_pred CC-----CCEEEEEEeeC
Q psy4771 266 TM-----SSRVHRYYLKG 278 (337)
Q Consensus 266 ~~-----~~~I~~~~~~g 278 (337)
.+ ..||+.++.+|
T Consensus 208 EGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 208 EGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp -S-TTTSS-SEEEEETTS
T ss_pred cCCcceeceEEEEEEcCC
Confidence 33 24666666655
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.5 Score=39.35 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=13.6
Q ss_pred ChhhHHHHHHHHHHHHHHHhcC
Q psy4771 1 MAFFRNFFISVVVGIVAITFYP 22 (337)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (337)
||++.|++--++|++++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (334)
T PRK13684 1 MKRLLKSLKNLLLLLALLLVLS 22 (334)
T ss_pred ChhHhHHHHHHHHHHHHHhhcc
Confidence 8887776666655555554444
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.64 Score=46.61 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++.|.|+.+...+.+. +-++..|..+|...++.. | -
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~------G---------------------------------H 576 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT------G---------------------------------H 576 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec------C---------------------------------C
Confidence 44557888888644433322 337777776676555543 1 1
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
-.....+++.++|+...+-. .+|.|..+|..+++.. .+.+.-..-+.+.|+.||. ++|+....+
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~--------------ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~Dn 641 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGD--------------EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADN 641 (707)
T ss_pred CCceEEEEEcCCCceEeecc--------------cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCC
Confidence 12357889999987544332 3568888888776542 2334444567899999995 888888889
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.|..+|+..
T Consensus 642 sV~lWD~~~ 650 (707)
T KOG0263|consen 642 SVRLWDLTK 650 (707)
T ss_pred eEEEEEchh
Confidence 999998753
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.11 Score=47.93 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=68.1
Q ss_pred CcEEEEECC-----CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccE
Q psy4771 123 GALHVADAY-----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSV 197 (337)
Q Consensus 123 G~lyVad~~-----~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v 197 (337)
.++||.|.. .+++.+|.+.+++.-.+. ....-.+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~-----------------------------------------~g~~~~~ 41 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID-----------------------------------------TGFLGNV 41 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE-----------------------------------------EESSEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEee-----------------------------------------cccCCce
Confidence 379999863 248889988887654443 1123347
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE--EEec------cccceeeEEEccCCCEEEEEeCC-
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK--VLIA------NLHFANGVELSADESFVIVAETM- 267 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~--~~~~------~~~~p~gia~~~dg~~lyva~~~- 267 (337)
++++||+ +|+++..... ..-.+..--|-.||.++-+.+ +.+. .+..++-.+++.||+++||.+..
T Consensus 42 ~~spdgk~~y~a~T~~sR-----~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSR-----GTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EE-TTSSEEEEEEEEEEE-----TTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred eECCCCCEEEEEEEEEec-----cccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 7899986 8887754210 000122235778888776432 2222 13567889999999999999976
Q ss_pred CCEEEEEEeeCC
Q psy4771 268 SSRVHRYYLKGP 279 (337)
Q Consensus 268 ~~~I~~~~~~g~ 279 (337)
...|.++|+...
T Consensus 117 a~SVtVVDl~~~ 128 (342)
T PF06433_consen 117 ATSVTVVDLAAK 128 (342)
T ss_dssp SEEEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 467999998654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.1 Score=32.16 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=29.1
Q ss_pred cCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeEC
Q psy4771 256 ADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 256 ~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
||+++|||++...++|..++.... .....+. ....|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~-vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIP-VGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEE-CCCCCceEEeC
Confidence 588899999999999999987432 1111122 23458888874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.82 Score=42.47 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=50.7
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
...|.+.++|||+...+-+..+ .|--+|..+|+...... ....-.-||++.|- +|.|+-+...+
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDk--------------SVkLW~g~tGk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsT 432 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDK--------------SVKLWDGRTGKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDST 432 (480)
T ss_pred hheeeEEECCCccEEEEeeccc--------------ceeeeeCCCcchhhhhhhccceeEEEEeccCc-cEEEEcCCCce
Confidence 3479999999987555444322 44444555666533333 34556789999887 59999999999
Q ss_pred EEEEEeeCC
Q psy4771 271 VHRYYLKGP 279 (337)
Q Consensus 271 I~~~~~~g~ 279 (337)
+.++++...
T Consensus 433 LKvw~V~tk 441 (480)
T KOG0271|consen 433 LKVWDVRTK 441 (480)
T ss_pred EEEEEeeee
Confidence 999998643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.2 Score=41.55 Aligned_cols=62 Identities=5% Similarity=-0.046 Sum_probs=39.7
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEE
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTE 145 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~ 145 (337)
.+. +...++.|..||..+......+. .......+.++++|.++++.... .|..+|+.+++..
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~----------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQIN----------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEe----------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 344 66778888888863322222221 11346789999999888875443 4888898877543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.66 Score=41.65 Aligned_cols=171 Identities=17% Similarity=0.174 Sum_probs=82.2
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeC-CCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD-SDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~-~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
-.|+-+.+-+||++.|.-+ .||. ..|+-|..+.-.. . .-|.-+-+| .+|++++...+-. ...
T Consensus 162 iGpHev~lm~DGrtlvvan-GGIe-thpdfgR~~lNld------s---MePSlvlld~atG~liekh~Lp~------~l~ 224 (366)
T COG3490 162 IGPHEVTLMADGRTLVVAN-GGIE-THPDFGRTELNLD------S---MEPSLVLLDAATGNLIEKHTLPA------SLR 224 (366)
T ss_pred cCcceeEEecCCcEEEEeC-Ccee-cccccCccccchh------h---cCccEEEEeccccchhhhccCch------hhh
Confidence 4599999999996665531 2222 2222221111110 0 124444444 4555542211100 002
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-------ccccceeeEEEccCCCEEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-------ANLHFANGVELSADESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~dg~~lyv 263 (337)
..+...+++++||++|+...-..-++-.- -|.-.-..++.++.+. .--.+--.||+..+...+-+
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~p--------pLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~l 296 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLP--------PLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVAL 296 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCC--------cceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEE
Confidence 34568899999999999886432111000 0111111122222111 01124457888866667888
Q ss_pred EeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 264 AETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 264 a~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+....|+...++.+.+..-.... ++. .-|++.+..| +-|+...+
T Consensus 297 TSP~GN~~vi~da~tG~vv~~a~----l~d-aaGva~~~~g-f~vssg~G 340 (366)
T COG3490 297 TSPRGNRAVIWDAATGAVVSEAA----LPD-AAGVAAAKGG-FAVSSGQG 340 (366)
T ss_pred ecCCCCeEEEEEcCCCcEEeccc----ccc-cccceeccCc-eEEecCCc
Confidence 88778887777765432211111 221 3466665443 55555554
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.086 Score=32.96 Aligned_cols=41 Identities=22% Similarity=0.471 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEcc
Q psy4771 203 GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSA 256 (337)
Q Consensus 203 G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~ 256 (337)
|+||+||...+. .|.+.+.++...+ .+...+..|+|||+++
T Consensus 1 ~~iYWtD~~~~~-------------~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDP-------------SIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTE-------------EEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCc-------------EEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 579999987431 5555555544433 4456799999999974
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.059 Score=33.70 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=30.1
Q ss_pred EEEEEeCCCC-EEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 260 FVIVAETMSS-RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 260 ~lyva~~~~~-~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
+||.+|...+ .|.+.+++|.. .++++...-..|.||++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 6999999999 99999998753 3444433334599999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.8 Score=39.50 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=44.4
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEe
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~ 148 (337)
..++.+|+...+|+|+.++.+....+ +...+.+ ....+..|... .+|+||+.+....++.+|..+|+.....
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~--W~~~~~~--~~~~~~~~~~~---~~G~i~~g~~~g~~y~ld~~~G~~~W~~ 137 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVK--WSYPLLG--AVAQLSGPILG---SDGKIYVGSWDGKLYALDASTGTLVWSR 137 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEE--ecccCcC--cceeccCceEE---eCCeEEEecccceEEEEECCCCcEEEEE
Confidence 37899998899999999998544322 1111110 00122223332 3899999975444999998777766554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=7.4 Score=40.78 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=90.1
Q ss_pred CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEEEEcCCCeEEEEecc
Q psy4771 73 GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISM 150 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~~~g~~~~l~~~ 150 (337)
..|.+...+|.|..|+..+...+..+. ...+.-.++++++ +|.++++-...+ |...|..++.......
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~---------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~- 615 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMK---------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK- 615 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEec---------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-
Confidence 455577778888888764333332221 1224467899986 677776655544 7777776554322211
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc-CCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD-SDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd-~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
. ......+.+. ++|..+++.. .+|.|
T Consensus 616 -----~----------------------------------~~~v~~v~~~~~~g~~latgs--------------~dg~I 642 (793)
T PLN00181 616 -----T----------------------------------KANICCVQFPSESGRSLAFGS--------------ADHKV 642 (793)
T ss_pred -----c----------------------------------CCCeEEEEEeCCCCCEEEEEe--------------CCCeE
Confidence 0 0123445553 3465444433 24577
Q ss_pred EEEcCCCCee--EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC----CceeeeecCCCCCCCceeECCC
Q psy4771 230 IQYNPKTKKN--KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ----GKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 230 ~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~----~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
..+|..++.. ..+...-..-..+++. +++.| ++-...+.|..+++..... .....+.. ......-++++++
T Consensus 643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~s~~ 719 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGLSVS 719 (793)
T ss_pred EEEECCCCCccceEecCCCCCEEEEEEe-CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEEcCC
Confidence 7787765431 2222222344677776 56544 4555567888888752111 11122221 2223455777777
Q ss_pred CCEEEEec
Q psy4771 304 GNFLVSLV 311 (337)
Q Consensus 304 G~l~va~~ 311 (337)
|.+.++..
T Consensus 720 ~~~lasgs 727 (793)
T PLN00181 720 DGYIATGS 727 (793)
T ss_pred CCEEEEEe
Confidence 77554443
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=94.46 E-value=5.3 Score=39.82 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=37.0
Q ss_pred ecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
.+..|.|-.+|++.+...... ........+|+++++++++++- ...+|..|...+.
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 556688888888776532111 1123457788888888777665 4578888888754
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.5 Score=39.59 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=55.9
Q ss_pred ccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCC----CCEEEEEEee-CCCCCceeeeecCCCCCCC-cee
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETM----SSRVHRYYLK-GPKQGKSEVFIDGLPGLPD-NVK 299 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~----~~~I~~~~~~-g~~~~~~~~~~~~~~g~Pd-gi~ 299 (337)
..|+.++.+++..+.+-.+-..- .-++++++++.||++... ...|++++++ ++ ..+.+.. ..+ .. .+.
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~-~~~-~~~~~~ 334 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTC-EDG-DHYSAS 334 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESST-TSS-TTEEEE
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccC-CCC-CceEEE
Confidence 38999998888766544443223 357888999999988876 3478888876 32 3333333 222 33 799
Q ss_pred ECCCCCEEEEecCCCCCc
Q psy4771 300 RDSKGNFLVSLVCPVEQP 317 (337)
Q Consensus 300 ~d~dG~l~va~~~~~~~p 317 (337)
+.++|+++|-...+...|
T Consensus 335 ~Spdg~y~v~~~s~~~~P 352 (353)
T PF00930_consen 335 FSPDGKYYVDTYSGPDTP 352 (353)
T ss_dssp E-TTSSEEEEEEESSSSC
T ss_pred ECCCCCEEEEEEcCCCCC
Confidence 999999888877664444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.89 Score=42.24 Aligned_cols=138 Identities=19% Similarity=0.166 Sum_probs=83.8
Q ss_pred eEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccc
Q psy4771 74 DLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~ 151 (337)
.+.++..+..++.|++.+. +.+.+.- ....-.+.+.|.|||+.+.+.+.. .|...+..+|+...-.+
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmt---------gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-- 406 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMT---------GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-- 406 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhh---------chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--
Confidence 5667778888999988432 2332221 222446789999998766665543 47777776665432221
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
| -.....-++...|-+|.|+.+... .|-.
T Consensus 407 ----G---------------------------------Hv~~VYqvawsaDsRLlVS~SkDs--------------TLKv 435 (480)
T KOG0271|consen 407 ----G---------------------------------HVAAVYQVAWSADSRLLVSGSKDS--------------TLKV 435 (480)
T ss_pred ----h---------------------------------ccceeEEEEeccCccEEEEcCCCc--------------eEEE
Confidence 1 123356788888888888887632 3333
Q ss_pred EcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 232 YNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 232 ~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
++..++++..-+. .-..-.++-++|||+ -|+..+++++++++
T Consensus 436 w~V~tkKl~~DLpGh~DEVf~vDwspDG~--rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVFAVDWSPDGQ--RVASGGKDKVLRLW 478 (480)
T ss_pred EEeeeeeecccCCCCCceEEEEEecCCCc--eeecCCCceEEEee
Confidence 3333444322222 233456788999995 35667788988876
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.9 Score=40.90 Aligned_cols=64 Identities=8% Similarity=0.172 Sum_probs=44.4
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCCCCCceeECCCCC-EEEEecCC
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+-+++|+-+.. .|+.+-+..++|...-...+ .....++.+ .+.|+...|++..+|+ +|++....
T Consensus 382 Witsla~i~~s-dL~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 382 WITSLAVIPGS-DLLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ceeeeEecccC-ceEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 56788888765 48888888777766555432 223444433 2568889999999998 88887544
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.2 Score=40.03 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=70.8
Q ss_pred CccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 109 QQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+..++...+.+..+| +|..+.....+-.+|..+..+...... .|-.
T Consensus 339 ~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA----~g~k----------------------------- 385 (459)
T KOG0288|consen 339 PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA----EGFK----------------------------- 385 (459)
T ss_pred ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec----cccc-----------------------------
Confidence 334567778888888 676664334577888887777776642 2210
Q ss_pred CCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc---eeeEEEccCCCEEEEE
Q psy4771 188 GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF---ANGVELSADESFVIVA 264 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~---p~gia~~~dg~~lyva 264 (337)
-..--+-+.++|+|....+ +..+|+||.++..+++++.....-.. -..++|++-|+.|.-+
T Consensus 386 --~asDwtrvvfSpd~~YvaA--------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAA--------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred --cccccceeEECCCCceeee--------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 1112466777777653322 34568999999999998776654333 3678888988877776
Q ss_pred eC
Q psy4771 265 ET 266 (337)
Q Consensus 265 ~~ 266 (337)
+.
T Consensus 450 dk 451 (459)
T KOG0288|consen 450 DK 451 (459)
T ss_pred cC
Confidence 64
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.21 E-value=6.5 Score=39.11 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=43.3
Q ss_pred CCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC----CCCcee
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG----LPDNVK 299 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g----~Pdgi~ 299 (337)
..|.|..+|+.+|++.--.. ...| .+-.+.-.+..+|+ .+..+.+..|+.+.++ .++-..+++ -|--.
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~-~~~p~~~~~l~t~g~lvf~-g~~~G~l~a~D~~TGe----~lw~~~~g~~~~a~P~ty- 511 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHK-EDFPLWGGVLATAGDLVFY-GTLEGYFKAFDAKTGE----ELWKFKTGSGIVGPPVTY- 511 (527)
T ss_pred CceeEEEEeCCCCceeeEec-CCCCCCCcceEECCcEEEE-ECCCCeEEEEECCCCC----EeEEEeCCCCceecCEEE-
Confidence 45789999999998643222 2222 22222234444444 4556789999876432 112111221 23332
Q ss_pred ECCCCCEEEEecCC
Q psy4771 300 RDSKGNFLVSLVCP 313 (337)
Q Consensus 300 ~d~dG~l~va~~~~ 313 (337)
..+|+.||+...+
T Consensus 512 -~~~G~qYv~~~~G 524 (527)
T TIGR03075 512 -EQDGKQYVAVLSG 524 (527)
T ss_pred -EeCCEEEEEEEec
Confidence 3479999987543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.21 Score=30.62 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=28.5
Q ss_pred CC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEc
Q psy4771 202 DG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELS 255 (337)
Q Consensus 202 ~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~ 255 (337)
+| ++|+++... +.|..+|+.+++...-..-...|.+++++
T Consensus 2 d~~~lyv~~~~~--------------~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGS--------------NTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCC--------------CEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 44 499888753 48888998877665444446788988875
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=94.04 E-value=3.8 Score=36.17 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce---eeEEEccCCCEEEEEeCCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA---NGVELSADESFVIVAETMSS 269 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyva~~~~~ 269 (337)
.++.+.+.++|++..+.-+ +.|.-+|+++-.. +.....| +...+.|+. .+||+-....
T Consensus 186 ~VtSlEvs~dG~ilTia~g---------------ssV~Fwdaksf~~---lKs~k~P~nV~SASL~P~k-~~fVaGged~ 246 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYG---------------SSVKFWDAKSFGL---LKSYKMPCNVESASLHPKK-EFFVAGGEDF 246 (334)
T ss_pred CCcceeeccCCCEEEEecC---------------ceeEEeccccccc---eeeccCccccccccccCCC-ceEEecCcce
Confidence 4688889999986543322 1455556543222 2233334 444567876 6999998899
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.+++||.+.
T Consensus 247 ~~~kfDy~T 255 (334)
T KOG0278|consen 247 KVYKFDYNT 255 (334)
T ss_pred EEEEEeccC
Confidence 999999964
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=4.3 Score=38.64 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCc-cCceeeeeecCCc-cEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeC
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKY-KSGLFEGLTSGSG-RLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAET 266 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~-~~~~~~~~~~~~G-~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~ 266 (337)
..++.+++||.++ +|+...-... ...++.......| ..-.++..+-+...+..+.. .-..++++-||. +.++-.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd 296 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGD 296 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeC
Confidence 3478888998765 7765543221 0000000000111 01112222223333333333 557899999995 666666
Q ss_pred CCCEEEEEEeeC
Q psy4771 267 MSSRVHRYYLKG 278 (337)
Q Consensus 267 ~~~~I~~~~~~g 278 (337)
..+.|.+.++..
T Consensus 297 ~dg~VcvWdi~S 308 (476)
T KOG0646|consen 297 EDGKVCVWDIYS 308 (476)
T ss_pred CCCCEEEEecch
Confidence 677888887753
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.2 Score=42.58 Aligned_cols=175 Identities=16% Similarity=0.199 Sum_probs=96.4
Q ss_pred ccEEEe--eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 65 PEAVVK--HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 65 P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
|.++-+ ++..+| ++..+++|..||.-....+..+ ...++.-+.+.|-++|+=+|+.+..+ ++..+-.
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---------HhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 445555 343666 9999999999986222112112 13455677899989998888866544 4444443
Q ss_pred CCeEEE-EeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc----------cCCC-CCCCCccEEEcCCCc
Q psy4771 141 TGQTEQ-LISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE----------IDGA-KPQIPNSVTVDSDGM 204 (337)
Q Consensus 141 ~g~~~~-l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~----------~~~~-~~~~pn~v~vd~~G~ 204 (337)
.+.... ++..... ..| .+++.|+|++. -.+.|..+... +++. ....+..+.+++||.
T Consensus 373 ~~v~ik~i~~~~~h------smP-~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 373 IPVPIKNIADPEMH------TMP-CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred CCccchhhcchhhc------cCc-ceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 332222 2211000 122 37788888887 22444444411 2221 234567888899988
Q ss_pred EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce----eeEEEccCCCEEEEEeCCCCEEE
Q psy4771 205 VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA----NGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 205 lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p----~gia~~~dg~~lyva~~~~~~I~ 272 (337)
..++-. .+|+++.+|-++-+ +...+... .++.+.|......++....+.|.
T Consensus 446 ~l~SGd--------------sdG~v~~wdwkt~k---l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 446 TLCSGD--------------SDGKVNFWDWKTTK---LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred eEEeec--------------CCccEEEeechhhh---hhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 655543 46799999865432 22233322 34555566555555554444443
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=93.79 E-value=4.9 Score=36.22 Aligned_cols=221 Identities=11% Similarity=0.156 Sum_probs=113.3
Q ss_pred eeccCcccCccEEEe--eCCeEEEEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEEC
Q psy4771 56 KLFENEIHGPEAVVK--HKGDLYMGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA 130 (337)
Q Consensus 56 ~~~~g~~~~P~~i~~--~~g~ly~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~ 130 (337)
+.+.|-+..--++-+ +...|.+...+|+++.||. ++...+ .+. ..-..-.++.|.|+.+.|-.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~-----------s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLP-----------SSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecC-----------ceeEEEEEECCCCCeEEecC
Confidence 344454443334444 3456778999999999997 333322 111 12244678999998887743
Q ss_pred CCc---EEEEEcC--CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc--cccc---eeeec-----cccCCCCCCCCc
Q psy4771 131 YFG---LYKVNVT--TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQ---LISMD-----TEIDGAKPQIPN 195 (337)
Q Consensus 131 ~~g---v~~vd~~--~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~---v~~~~-----~~~~~~~~~~pn 195 (337)
-.. |+.+..+ .+.+. ..+ +..|-.-++ .-..+-.|++++ +.+. +..+. ..+.+. ..-.-
T Consensus 117 LdN~Csiy~ls~~d~~g~~~-v~r---~l~gHtgyl-ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH-~gDV~ 190 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVR-VSR---ELAGHTGYL-SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH-TGDVM 190 (343)
T ss_pred cCceeEEEecccccccccce-eee---eecCcccee-EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC-cccEE
Confidence 222 5555422 22111 111 122221112 123344477777 1111 11111 011111 12234
Q ss_pred cEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 196 SVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 196 ~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
.+.+.| +++.|++-.-.. .-..+|...+.......+ -.--|.|++-|+| .-+++-+......-
T Consensus 191 slsl~p~~~ntFvSg~cD~--------------~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRl 255 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDK--------------SAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRL 255 (343)
T ss_pred EEecCCCCCCeEEeccccc--------------ceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCceeEE
Confidence 566667 778887765422 333344444443333322 2345888888988 47777777788888
Q ss_pred EEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEec
Q psy4771 274 YYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
|++.... +..+|.. ....-...+++...|+|..+-+
T Consensus 256 yDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 256 YDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred EeecCCc--EEeeeccCcccCCceeEEEcccccEEEeee
Confidence 8885321 2333322 1112257889999999666643
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.7 Score=46.10 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=97.0
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCC--cE
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYF--GL 134 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~--gv 134 (337)
.-.|+++++ -.+.+| +|.....|...+. +....+. +. .....|..+++++. |.+|.+|+.. .+
T Consensus 479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl-~~---------~~l~~~r~~~v~p~~g~~~wtd~~~~~~i 548 (877)
T KOG1215|consen 479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVL-VS---------KDLDLPRSIAVDPEKGLMFWTDWGQPPRI 548 (877)
T ss_pred ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEE-Ee---------cCCCCccceeeccccCeeEEecCCCCchh
Confidence 457889988 355666 9999998888773 3322221 11 12266999999998 5899999763 35
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~ 213 (337)
.+-..++.....+... ....||++++|- +.++|+.|....
T Consensus 549 ~ra~~dg~~~~~l~~~---------------------------------------~~~~p~glt~d~~~~~~yw~d~~~~ 589 (877)
T KOG1215|consen 549 ERASLDGSERAVLVTN---------------------------------------GILWPNGLTIDYETDRLYWADAKLD 589 (877)
T ss_pred hhhcCCCCCceEEEeC---------------------------------------CccCCCcceEEeecceeEEEcccCC
Confidence 5555554444444421 356899999997 557999998754
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
. .+...+-++.+.+ .....+..|.++++..+ .+|.++.....+.+...
T Consensus 590 ~-------------~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~--~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 590 Y-------------TIESANMDGQNRRVVDSEDLPHPFGLSVFED--YIYWTDWSNRAISRAEK 638 (877)
T ss_pred c-------------ceeeeecCCCceEEeccccCCCceEEEEecc--eeEEeeccccceEeeec
Confidence 2 2333333323222 33445677888888654 59999988776666554
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=93.47 E-value=5.2 Score=35.51 Aligned_cols=180 Identities=12% Similarity=0.059 Sum_probs=94.8
Q ss_pred ccCccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEE
Q psy4771 62 IHGPEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKV 137 (337)
Q Consensus 62 ~~~P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~v 137 (337)
+..-++++. .+| .+-++.-++.+..+.............. ...+...-++.++.. .++++.++ ..|.+.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-------gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-------GHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-------CCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 334567776 344 4556777776666654322211111110 112334567888775 55555433 458888
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~ 216 (337)
|...++-..... ..|. -.-++..|+|. +.+
T Consensus 93 d~r~~k~~~~i~----~~~e------------------------------------ni~i~wsp~g~~~~~--------- 123 (313)
T KOG1407|consen 93 DIRSGKCTARIE----TKGE------------------------------------NINITWSPDGEYIAV--------- 123 (313)
T ss_pred EeccCcEEEEee----ccCc------------------------------------ceEEEEcCCCCEEEE---------
Confidence 876554433321 1111 12344555543 222
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPD 296 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pd 296 (337)
.+.+..|-.+|..+.++..--.-..+.|-+++..++ .+++..++.++|.....-. +..... +...|.
T Consensus 124 ------~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps--Lkpv~s----i~AH~s 190 (313)
T KOG1407|consen 124 ------GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS--LKPVQS----IKAHPS 190 (313)
T ss_pred ------ecCcccEEEEEecccceeehhcccceeeeeeecCCC-CEEEEecCCceEEEEeccc--cccccc----cccCCc
Confidence 223346667776555443333334567899999666 4888888878877766431 111111 223344
Q ss_pred c---eeECCCCCEEEEe
Q psy4771 297 N---VKRDSKGNFLVSL 310 (337)
Q Consensus 297 g---i~~d~dG~l~va~ 310 (337)
+ |++|++|+++..-
T Consensus 191 nCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 191 NCICIEFDPDGRYFATG 207 (313)
T ss_pred ceEEEEECCCCceEeec
Confidence 4 7899999866543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.7 Score=39.61 Aligned_cols=63 Identities=13% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 122 NGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 122 ~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
+|.+|.--+. ..|.+++|++|++...... .+. +..+..+ ....+-+||||.+
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widl----S~L----~~~~~~~-------------------~~~~nvlNGIA~~ 237 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDL----SGL----LKELNLD-------------------KSNDNVLNGIAHD 237 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEc----cCC----chhcCcc-------------------ccccccccceeec
Confidence 4555544333 4699999999999888752 221 1111111 1235679999999
Q ss_pred CCC-cEEEEcCC
Q psy4771 201 SDG-MVYWSDSS 211 (337)
Q Consensus 201 ~~G-~lyvtd~~ 211 (337)
+++ ++|+|--.
T Consensus 238 ~~~~r~~iTGK~ 249 (262)
T COG3823 238 PQQDRFLITGKL 249 (262)
T ss_pred CcCCeEEEecCc
Confidence 976 79988754
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=93.29 E-value=6.9 Score=36.30 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=39.3
Q ss_pred ecCCccEEEEcCCCCeeEEEecccc-ceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLH-FANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~-~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
...+|.|+.+|..+|+......+.. .-..++++||++ +.|+-+..+.-.+|..
T Consensus 344 ~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEV 397 (399)
T ss_pred eccCceEEeeeccccceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEec
Confidence 4567899999999998766555543 346788999885 7777777787777764
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=93.28 E-value=7.4 Score=39.89 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=49.5
Q ss_pred cEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCE
Q psy4771 228 RLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNF 306 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l 306 (337)
.|..||..+.++.+-. .....-+.++|||||++|..+.. .+.|..+|+-.+.+-. .+. ++.-+-.+.+.+.|.+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt~~lID--~~~--vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPTGTLID--GLL--VDSPCTSLSFSPNGDF 631 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccCcceee--eEe--cCCcceeeEECCCCCE
Confidence 5677776655432222 23456789999999998877775 4688889985332211 111 1222467777777776
Q ss_pred EEEecCC
Q psy4771 307 LVSLVCP 313 (337)
Q Consensus 307 ~va~~~~ 313 (337)
..+.+..
T Consensus 632 LAT~Hvd 638 (910)
T KOG1539|consen 632 LATVHVD 638 (910)
T ss_pred EEEEEec
Confidence 6665544
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.34 Score=35.54 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=30.3
Q ss_pred CcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEE
Q psy4771 81 GGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVN 138 (337)
Q Consensus 81 ~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd 138 (337)
-+.++-+++++.+.++ .....|+||.+++++ .|||++...+ |..+.
T Consensus 35 ~~~Vvyyd~~~~~~va------------~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 35 WGNVVYYDGKEVKVVA------------SGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CceEEEEeCCEeEEee------------ccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 3445556665544332 345779999999987 9999987643 55544
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=93.09 E-value=3.9 Score=41.10 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=84.5
Q ss_pred cEEEeeCCeEE-EEecC------cEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc---
Q psy4771 66 EAVVKHKGDLY-MGVDG------GHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG--- 133 (337)
Q Consensus 66 ~~i~~~~g~ly-~d~~~------g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g--- 133 (337)
.++++-++.|| ++-.+ ..+.+||+ +++..+... ...-.-.|++. =+|.||+.-...|
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M----------~~~R~~~~v~~-l~g~iYavGG~dg~~~ 394 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM----------NTKRSDFGVAV-LDGKLYAVGGFDGEKS 394 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc----------cCccccceeEE-ECCEEEEEeccccccc
Confidence 45555688999 66555 35677776 444433211 11111235555 3578999854332
Q ss_pred ---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcC
Q psy4771 134 ---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS 210 (337)
Q Consensus 134 ---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~ 210 (337)
+-++|+.+.+-...+... ....-.++++ -+|.||+.-.
T Consensus 395 l~svE~YDp~~~~W~~va~m~--------------------------------------~~r~~~gv~~-~~g~iYi~GG 435 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPML--------------------------------------TRRSGHGVAV-LGGKLYIIGG 435 (571)
T ss_pred cccEEEecCCCCcccccCCCC--------------------------------------cceeeeEEEE-ECCEEEEEcC
Confidence 777888776655554310 0111122322 3689998876
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc--cceeeEEEccCCCEEEEEeCCC-----CEEEEEEeeC
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL--HFANGVELSADESFVIVAETMS-----SRVHRYYLKG 278 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~--~~p~gia~~~dg~~lyva~~~~-----~~I~~~~~~g 278 (337)
.... ...-..+.+|||.+++.+....-. ..-.|++.- ++ .||+.-... .+|.+|++..
T Consensus 436 ~~~~--------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 436 GDGS--------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cCCC--------ccccceEEEEcCCCCceeecCCcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCCC
Confidence 4321 112248999999999876544321 122455554 33 699887543 3477788754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.1 Score=40.35 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=21.5
Q ss_pred EECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 118 KFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 118 ~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
..+.+|++|+......++.+|++++++.
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~ 91 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTGLVK 91 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCCcEE
Confidence 4667889999843345999999988765
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=92.87 E-value=6.6 Score=35.01 Aligned_cols=178 Identities=7% Similarity=-0.007 Sum_probs=100.7
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEecc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~ 150 (337)
+++||+...+...-.|-.-+.+.+-++ ...-+..+.+.+|.+....++-+. +.+...|.++|+.......
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty---------~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTY---------DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeee---------cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec
Confidence 567787777776656543122222111 123355678888888766666544 4467778777775544421
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc--EEEEcCCCCccCceeeeeecCCcc
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM--VYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~--lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
......+.++.+|+ ++.+|....+ .+.
T Consensus 93 ----------------------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~-----------~~~ 121 (327)
T KOG0643|consen 93 ----------------------------------------NSPVKRVDFSFGGNLILASTDKQMGY-----------TCF 121 (327)
T ss_pred ----------------------------------------CCeeEEEeeccCCcEEEEEehhhcCc-----------ceE
Confidence 11235667788887 4556654332 234
Q ss_pred EEEEcCC-------CCe-eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC-CCCceeeeecCCCCCCCcee
Q psy4771 229 LIQYNPK-------TKK-NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP-KQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 229 v~~~d~~-------~~~-~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~-~~~~~~~~~~~~~g~Pdgi~ 299 (337)
|..+|.. ..+ ..++...-..++.+.|++-+++|... ...+.|.+|+...+ ...+... + .......|.
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G-he~G~is~~da~~g~~~v~s~~--~-h~~~Ind~q 197 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG-HEDGSISIYDARTGKELVDSDE--E-HSSKINDLQ 197 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe-cCCCcEEEEEcccCceeeechh--h-hcccccccc
Confidence 4444432 122 22333334567788889988766554 45689999998632 1111100 0 111367899
Q ss_pred ECCCCCEEEEecCC
Q psy4771 300 RDSKGNFLVSLVCP 313 (337)
Q Consensus 300 ~d~dG~l~va~~~~ 313 (337)
+.+|..++++....
T Consensus 198 ~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 198 FSRDRTYFITGSKD 211 (327)
T ss_pred ccCCcceEEecccC
Confidence 99999988887544
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.79 E-value=7.4 Score=35.32 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+.-.|+.+..+ -.||+|...|+..+|..+-+--+++.
T Consensus 129 gyaygv~vsGn-~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 129 GYAYGVYVSGN-YAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred ceEEEEEecCC-EEEEeeccCcEEEEECCCCCCceeee
Confidence 55667777543 78999988898888876554444443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.7 Score=43.46 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=45.2
Q ss_pred ccEEEEcCCCCeeEEEeccc-cceeeEEEccCCCEEE-EEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC--CceeECC
Q psy4771 227 GRLIQYNPKTKKNKVLIANL-HFANGVELSADESFVI-VAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP--DNVKRDS 302 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~-~~p~gia~~~dg~~ly-va~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P--dgi~~d~ 302 (337)
-.+|.+|.++++++.+-++- ....|..++++.+.+| |-+ ..+|.+++++..+ .+++.+-..++- ....+++
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~--~~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN--GRSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANS 134 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET--TTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-T
T ss_pred cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC--CCeEEEEECCcCc---EEEEEECCcccccccceeeCC
Confidence 48999999999998887653 2234788888888874 544 4689999987532 223333111111 2334578
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
|++.+++.-..
T Consensus 135 d~t~~~g~e~~ 145 (386)
T PF14583_consen 135 DCTKLVGIEIS 145 (386)
T ss_dssp TSSEEEEEEEE
T ss_pred CccEEEEEEEe
Confidence 88888876443
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=92.66 E-value=3.8 Score=38.61 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=84.7
Q ss_pred cCCcceEEECCCCcEEEEECCCcE-EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 111 CGRPLGIKFDKNGALHVADAYFGL-YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~~~gv-~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
.....+++|.+||.|..+-.-..+ +..|..+|.-..+.. |
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~------g--------------------------------- 343 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA------G--------------------------------- 343 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEec------c---------------------------------
Confidence 344568999999999888433332 334666665433332 1
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
-.....+|+++|+|....|.++.+ .-+||.+.... .+-.+...-..-..|.++|+.....++.+..+
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dn------------t~kVWDLR~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDN------------TCKVWDLRMRS-ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred cccceeeEeECCCceEEeecCCCC------------cEEEeeecccc-cceecccccchhhheEecccCCeEEEEcccCc
Confidence 133467899999998777776532 23555554331 23334444455678999997667888888888
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
.+..+...+-.. ...++. ..+-.-.+.+.+||...++.
T Consensus 411 t~kiWs~~~~~~--~ksLaG-He~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 411 TVKIWSTRTWSP--LKSLAG-HEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ceeeecCCCccc--chhhcC-CccceEEEEeccCCceEEEe
Confidence 877666443211 122222 12234456666777655554
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.3 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=25.3
Q ss_pred ccCCcceEEECCCC-cEEEEECCCc-EEEEEcCC
Q psy4771 110 QCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~ 141 (337)
....|+|+++|+.+ +||.+|...+ |.+.+.++
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 45679999999986 8999998765 77777654
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=18 Score=37.97 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=81.0
Q ss_pred EEEe-eCCeEE-EEecCcEEEEEeCCceeEE-EecCccccCccccCccCCcceEEECCC-CcEEEEECCCc-EEEEEcCC
Q psy4771 67 AVVK-HKGDLY-MGVDGGHILKLSGGKLVPV-VKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~g-v~~vd~~~ 141 (337)
++++ .++.++ +...++.|..|+......- ..... ............++++++. ++.+++-...+ |...|..+
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHY---PVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCccccccccccc---ceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 3455 455544 7788888888874221000 00000 0000011123457888764 44444443444 66678776
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~ 220 (337)
++...... + --....++++++ +|.+++|-..
T Consensus 565 ~~~~~~~~------~---------------------------------H~~~V~~l~~~p~~~~~L~Sgs~--------- 596 (793)
T PLN00181 565 SQLVTEMK------E---------------------------------HEKRVWSIDYSSADPTLLASGSD--------- 596 (793)
T ss_pred CeEEEEec------C---------------------------------CCCCEEEEEEcCCCCCEEEEEcC---------
Confidence 65433221 1 012357888886 6776655543
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEc-cCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELS-ADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~-~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..+++.............+++. +++. .+++-...+.|..+++..
T Consensus 597 -----Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 597 -----DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred -----CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 346667776655432222222344567775 4565 555555678999998754
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.96 E-value=8.6 Score=34.17 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=22.9
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
...|+..+.+-.+||+++.. -.||+|..+.
T Consensus 206 QTEG~VaDdEtG~LYIaeEd-vaiWK~~Aep 235 (364)
T COG4247 206 QTEGMVADDETGFLYIAEED-VAIWKYEAEP 235 (364)
T ss_pred cccceeeccccceEEEeecc-ceeeecccCC
Confidence 34688888776789999964 5799998763
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=91.90 E-value=9.8 Score=34.71 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=47.7
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE-EcCCCCee-EEEecccc--ceeeEEEccCCCEEEEEeCCCC
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ-YNPKTKKN-KVLIANLH--FANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~-~d~~~~~~-~~~~~~~~--~p~gia~~~dg~~lyva~~~~~ 269 (337)
...++..-+|.+..|.+. +|.|.| +|..+|+. ..+..|.. .-..|+++||.+ ...+.+.++
T Consensus 184 Iacv~Ln~~Gt~vATaSt--------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKg 248 (346)
T KOG2111|consen 184 IACVALNLQGTLVATAST--------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKG 248 (346)
T ss_pred eeEEEEcCCccEEEEecc--------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCC
Confidence 456777788887766654 455554 67666643 33444433 346899999996 445556789
Q ss_pred EEEEEEeeCC
Q psy4771 270 RVHRYYLKGP 279 (337)
Q Consensus 270 ~I~~~~~~g~ 279 (337)
+|..|.+.+.
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999999764
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=91.80 E-value=5.3 Score=37.68 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=91.5
Q ss_pred cCccEEEe-eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEE
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVN 138 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd 138 (337)
+.+.+.+. .||.=+ ++..++.|+.|+. |+... . |..-...+...|++.+|| .++.......++.++
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~--~--------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG--N--------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhh--c--------ccccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence 45666666 555544 8889999999976 32210 0 100111346789999999 566555445577776
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeec-------cccCCCCCCCCccEEEcCCCcEEE
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMD-------TEIDGAKPQIPNSVTVDSDGMVYW 207 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~-------~~~~~~~~~~pn~v~vd~~G~lyv 207 (337)
.++..-+-+... ..+ =..+.++.||++. ...++.--+ .++.|. ..|+..+
T Consensus 383 ~e~~~dr~lise---~~~-----its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh-----------kq~~fiI 443 (519)
T KOG0293|consen 383 REARVDRGLISE---EQP-----ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH-----------KQGHFII 443 (519)
T ss_pred hhhhhhhccccc---cCc-----eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc-----------cccceEE
Confidence 654322223221 111 1234455555554 222221111 111111 0111111
Q ss_pred -EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 208 -SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 208 -td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
+..+.. +......+..++.||.++..+|+......| ....|.++++|.....+.+.+..++|...-
T Consensus 444 rSCFgg~--~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGG--NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCC--CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 111100 001122244556888888777765444433 456788888887777777776666655443
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=91.63 E-value=11 Score=34.52 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=46.8
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
.|++++.|.|+|-.+-.+ ++.+..+|.-.|+...+..--..+.-|.|++.|++.+|.- +++|-.
T Consensus 130 Vt~lsiHPS~KLALsVg~--------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i 193 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGG--------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNKIDI 193 (362)
T ss_pred cceeEecCCCceEEEEcC--------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccEEEE
Confidence 899999999987766544 2244444544454444443344667799999999888876 568888
Q ss_pred EEeeC
Q psy4771 274 YYLKG 278 (337)
Q Consensus 274 ~~~~g 278 (337)
|.++.
T Consensus 194 ~q~d~ 198 (362)
T KOG0294|consen 194 YQLDN 198 (362)
T ss_pred Eeccc
Confidence 87764
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=91.62 E-value=9.5 Score=34.00 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=83.1
Q ss_pred CccEEEeeCCeEE-EEecCcEEEEEeCC--ceeEEEecCccc-cCccc-cCccCCcceEEECCCC--cEEEEECCCc---
Q psy4771 64 GPEAVVKHKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDC-YGFKY-EQQCGRPLGIKFDKNG--ALHVADAYFG--- 133 (337)
Q Consensus 64 ~P~~i~~~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~-~~~~~-~~~~~~P~Gl~~d~~G--~lyVad~~~g--- 133 (337)
|.-.++ -+|.+| --.....|+|++-. .......+.... ..... ......=..+++|.+| -||-+....|
T Consensus 76 GtG~VV-YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 76 GTGVVV-YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred cccEEE-ECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 544444 456665 56666789999863 322222221100 00000 0111122479999888 3333333334
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
|.++|+++-.+...... ... .-..-|...+ -|.||++++...
T Consensus 155 vSkLnp~tL~ve~tW~T--~~~----------------------------------k~sa~naFmv--CGvLY~~~s~~~ 196 (255)
T smart00284 155 ISKLNPATLTIENTWIT--TYN----------------------------------KRSASNAFMI--CGILYVTRSLGS 196 (255)
T ss_pred EEeeCcccceEEEEEEc--CCC----------------------------------cccccccEEE--eeEEEEEccCCC
Confidence 46788876655444321 111 1111222222 488999986321
Q ss_pred ccCceeeeeecCCcc-EEEEcCCCCeeEEEeccccce----eeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 214 YKSGLFEGLTSGSGR-LIQYNPKTKKNKVLIANLHFA----NGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~-v~~~d~~~~~~~~~~~~~~~p----~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
...+ -+.||..+++...+.-.+..+ ..|...|.++.||+=| ++.+..|++
T Consensus 197 -----------~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 197 -----------KGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred -----------CCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 1223 467888776544332233333 3478889888999988 456677765
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=91.50 E-value=9.9 Score=33.97 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=71.5
Q ss_pred cceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
...+++.|.|++..+-++.. +......+++..-+.. ++|- -+
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~----lEGH---------------------------------En 106 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT----LEGH---------------------------------EN 106 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee----eecc---------------------------------cc
Confidence 56899999999766666655 3333344455555543 3332 23
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE---EEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK---VLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~---~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
..-.+++..+|++..|.+..+ +--|+.+|- +.+.+ ++.+...--..+.+.|-.. |+++-+..+
T Consensus 107 EVK~Vaws~sG~~LATCSRDK------------SVWiWe~de-ddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDn 172 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDK------------SVWIWEIDE-DDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDN 172 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCC------------eEEEEEecC-CCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCC
Confidence 467889999999887777643 113444442 23332 3344455567888998764 777888888
Q ss_pred EEEEEEee
Q psy4771 270 RVHRYYLK 277 (337)
Q Consensus 270 ~I~~~~~~ 277 (337)
+|..|+-.
T Consensus 173 TIk~~~~~ 180 (312)
T KOG0645|consen 173 TIKVYRDE 180 (312)
T ss_pred eEEEEeec
Confidence 88888765
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=91.34 E-value=13 Score=39.12 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=52.3
Q ss_pred CCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc---EEEEEcCCCeEEEE
Q psy4771 72 KGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG---LYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g---v~~vd~~~g~~~~l 147 (337)
++.+. +...+++|+.|+.-+...+..+ ....+.+.|+.+||-|..+.+.+..+ |++.+. -+..+.+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl---------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~I 209 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVL---------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSI 209 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeee---------ecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEee
Confidence 45555 6777889999987444333333 23446689999999998888877655 444332 3444444
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTG 174 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~ 174 (337)
..+..+..+.+.+ --+.-+|||+++
T Consensus 210 t~pf~~~~~~T~f--~RlSWSPDG~~l 234 (942)
T KOG0973|consen 210 TKPFEESPLTTFF--LRLSWSPDGHHL 234 (942)
T ss_pred ccchhhCCCccee--eecccCCCcCee
Confidence 4432222222100 013346777776
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=91.28 E-value=3.1 Score=39.21 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCcceEEECCCCcEEEEEC-CCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADA-YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~-~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
..+...++-|||.=+|+-+ ..++...|.++....-. .|. .
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W-------~gv--------------------------------r 353 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW-------EGV--------------------------------R 353 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc-------ccc--------------------------------c
Confidence 4566788888984455543 34588888775432211 221 2
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
.....|+++.+||. ++..+.. -.+..|+..+..-+.+...-..-..++++.|++ +...+-..+
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d---------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~q 417 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVD---------------KKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQ 417 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecc---------------cceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccC
Confidence 34468999999997 5544422 144444443332222333334457788999996 555555677
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.|.-.++..
T Consensus 418 ei~LWDl~e 426 (519)
T KOG0293|consen 418 EIHLWDLEE 426 (519)
T ss_pred eeEEeecch
Confidence 888888764
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=91.18 E-value=13 Score=38.57 Aligned_cols=119 Identities=11% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+...++.++|+|++.++.+..| |..+|.+++.+....+.-....+ ...
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-------------------------------~~~ 187 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-------------------------------FIL 187 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-------------------------------ccc
Confidence 4456999999997777766666 77778877665433321000000 000
Q ss_pred CCCCccEEEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccc--cceeeEEEccCCCEEEEEeC
Q psy4771 191 PQIPNSVTVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANL--HFANGVELSADESFVIVAET 266 (337)
Q Consensus 191 ~~~pn~v~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~--~~p~gia~~~dg~~lyva~~ 266 (337)
-...+-+++.|+| .+.+... ++.|-.|++++.+..... +.+ ..-+.++|+|.|++| .+.+
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~---------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~ 251 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPV---------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI-AAST 251 (933)
T ss_pred cceeeeeeecCCCCeEEeecc---------------CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE-eeec
Confidence 1234566778874 4433322 235666666665543222 221 125788999999643 3444
Q ss_pred CCCEEEEEEee
Q psy4771 267 MSSRVHRYYLK 277 (337)
Q Consensus 267 ~~~~I~~~~~~ 277 (337)
..+.|.+++.+
T Consensus 252 ~~g~I~vWnv~ 262 (933)
T KOG1274|consen 252 LDGQILVWNVD 262 (933)
T ss_pred cCCcEEEEecc
Confidence 56889988886
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.7 Score=37.93 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=40.4
Q ss_pred ccCceeccCcccCccEEEe-eCCeEEEEecCcEEEEEeC--CceeEE-----EecCccccCccccCccCCcceEEECCCC
Q psy4771 52 NNAEKLFENEIHGPEAVVK-HKGDLYMGVDGGHILKLSG--GKLVPV-----VKLGKDCYGFKYEQQCGRPLGIKFDKNG 123 (337)
Q Consensus 52 ~~~~~~~~g~~~~P~~i~~-~~g~ly~d~~~g~I~~~~~--~~~~~~-----~~~g~~~~~~~~~~~~~~P~Gl~~d~~G 123 (337)
...+++..|....=..|.+ ..|.||+=..+|+++|... ...... .++| ........-+.++++|
T Consensus 70 ~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG--------~~GW~~f~~vfa~~~G 141 (229)
T PF14517_consen 70 SGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIG--------GTGWNDFDAVFAGPNG 141 (229)
T ss_dssp HH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE---------SSGGGEEEEEE-TTS
T ss_pred ccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecc--------cCCCccceEEEeCCCc
Confidence 4456666663333347777 6899996667899999864 111111 1111 1222346679999999
Q ss_pred cEEEEECCCcEEEE
Q psy4771 124 ALHVADAYFGLYKV 137 (337)
Q Consensus 124 ~lyVad~~~gv~~v 137 (337)
.||+.+....+++.
T Consensus 142 vLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 142 VLYAITPDGRLYRR 155 (229)
T ss_dssp -EEEEETTE-EEEE
T ss_pred cEEEEcCCCceEEe
Confidence 99998854435555
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=90.77 E-value=6.7 Score=35.86 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=41.4
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
...|--++++|+|+.|-++- +..|..|....++. .+.+-+...+....|+.+++|++.+++...
T Consensus 331 g~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~--~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKD--YPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred CCCceEEEeCCCCcEEEeec--CCceEEEEcccCcc--chhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 34677899999998666655 45777777543211 111111122457899999999988888766
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.64 E-value=6.4 Score=40.86 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=45.3
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~ 272 (337)
...++.+.+|.|-|... .|.|--||.-+......+.++..| -||.++.||++|+.+- ...|.
T Consensus 580 Fs~~aTt~~G~iavgs~---------------~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLl 642 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSN---------------KGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLL 642 (794)
T ss_pred ceEEEecCCceEEEEeC---------------CCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEE
Confidence 46778888888876665 356666665444445556666655 6999999998777665 44666
Q ss_pred EEEe
Q psy4771 273 RYYL 276 (337)
Q Consensus 273 ~~~~ 276 (337)
.++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6665
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.1 Score=42.83 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=36.0
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC--ceeeeec--------------CCCCCCCceeECCCCC-EEEEe
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKGPKQG--KSEVFID--------------GLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~--~~~~~~~--------------~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
.+..|-+|-|.++|||+....+.|..|++++...- ..++++. .+.|.|.-+.+..||+ +||+.
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 46789999999999999999999999999874211 1122322 1334588899999996 99987
Q ss_pred cCC
Q psy4771 311 VCP 313 (337)
Q Consensus 311 ~~~ 313 (337)
.--
T Consensus 393 SLy 395 (461)
T PF05694_consen 393 SLY 395 (461)
T ss_dssp ---
T ss_pred ecc
Confidence 544
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=90.60 E-value=9 Score=33.63 Aligned_cols=136 Identities=9% Similarity=0.045 Sum_probs=77.6
Q ss_pred EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccC
Q psy4771 77 MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEID 155 (337)
Q Consensus 77 ~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~ 155 (337)
+.-.+..++.||-...+.+.+|+ ...+..+.++|+.+..+.++-+.. .+..+|=.....+.+.
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~r---------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ------- 139 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFR---------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ------- 139 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecc---------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc-------
Confidence 44556667777765444455554 334667889998887777775543 3666665433222211
Q ss_pred CCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCC
Q psy4771 156 GAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK 235 (337)
Q Consensus 156 g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~ 235 (337)
++++. ......|.+. +...++ ...+|++.+||..
T Consensus 140 -------------------------ildea-----~D~V~Si~v~--~heIva--------------GS~DGtvRtydiR 173 (307)
T KOG0316|consen 140 -------------------------ILDEA-----KDGVSSIDVA--EHEIVA--------------GSVDGTVRTYDIR 173 (307)
T ss_pred -------------------------hhhhh-----cCceeEEEec--ccEEEe--------------eccCCcEEEEEee
Confidence 11110 1112223232 222222 3457899999987
Q ss_pred CCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 236 TKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 236 ~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|+. ..+.+..| +.+.+++|++...++.. ...|.-++-+
T Consensus 174 ~G~l--~sDy~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~ 213 (307)
T KOG0316|consen 174 KGTL--SSDYFGHPITSVSFSKDGNCSLASSL-DSTLRLLDKE 213 (307)
T ss_pred ccee--ehhhcCCcceeEEecCCCCEEEEeec-cceeeecccc
Confidence 7764 34455544 89999999987777664 4566656654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.46 E-value=7.7 Score=37.44 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=35.4
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC--CEEEEEEeeCCC
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS--SRVHRYYLKGPK 280 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~--~~I~~~~~~g~~ 280 (337)
.||.+|..+++...+......-..=.++|||+.|+++.... ..|++++.+|..
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 78999998887655443333333446789999987665433 468888877653
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=90.45 E-value=15 Score=34.20 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=44.1
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE-EcCCCCe-eEEEeccc--cceeeEEEccCCCEEEEEeCCCC
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ-YNPKTKK-NKVLIANL--HFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~-~d~~~~~-~~~~~~~~--~~p~gia~~~dg~~lyva~~~~~ 269 (337)
...++++++|++..|-+. +|.|.| |...+|+ +....+|. ..-..++|++|+. +..+.+...
T Consensus 176 lAalafs~~G~llATASe--------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~Te 240 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASE--------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTE 240 (391)
T ss_pred eeEEEECCCCCEEEEecc--------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCC
Confidence 568999999998766654 334333 2223333 22233332 2346789999997 555566678
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
+|..|.++.
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999999863
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=90.35 E-value=14 Score=37.73 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=84.3
Q ss_pred CCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEE
Q psy4771 72 KGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l 147 (337)
|+..| ++.-||++--|+- .++.... ..-..-..+++.|+|...|.-.+.| .+.++..+-++..-
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWN------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeeh------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 66777 8899998877765 3333221 1113466899999997777777777 55556655544332
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC--cEEEEcCCCCccCceeeeeecC
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG--MVYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G--~lyvtd~~~~~~~~~~~~~~~~ 225 (337)
.... ...++ ........|+-+.+.- .|.||...+
T Consensus 489 ~~I~-~~~~K------------------------------k~~~~rITG~Q~~p~~~~~vLVTSnDS------------- 524 (712)
T KOG0283|consen 489 FHIR-LHNKK------------------------------KKQGKRITGLQFFPGDPDEVLVTSNDS------------- 524 (712)
T ss_pred eeEe-eccCc------------------------------cccCceeeeeEecCCCCCeEEEecCCC-------------
Confidence 2110 01111 0112235566655421 477766542
Q ss_pred CccEEEEcCCCCeeEEEecccc---ceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLH---FANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~---~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+|-.||..+.++.....++. ...-..|+.||++|..+. ..+.|+..+.+
T Consensus 525 --rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~ 576 (712)
T KOG0283|consen 525 --RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKND 576 (712)
T ss_pred --ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cCceEEEEeCC
Confidence 67777754444333333433 334567888998877766 66788877764
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=8 Score=38.75 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC-CeeEEEeccccce---eeEEEccCCCEEEEEeCCCC--EEEEEE
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT-KKNKVLIANLHFA---NGVELSADESFVIVAETMSS--RVHRYY 275 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~-~~~~~~~~~~~~p---~gia~~~dg~~lyva~~~~~--~I~~~~ 275 (337)
+|.||+....... ......+.+|||.+ .+.+.+. .+..+ .|+++- +| .|||.-...+ .+.+|+
T Consensus 463 ~~~IYv~GG~~~~--------~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 463 KDDIYVVCDIKDE--------KNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILH-DN-TIMMLHCYESYMLQDTFN 531 (557)
T ss_pred CCEEEEEeCCCCC--------CccceeEEEecCCCCCCeeEcc-ccCcccccceeEEE-CC-EEEEEeeecceeehhhcC
Confidence 5789988543110 00112578999998 6765443 33322 344443 44 6998764333 566666
Q ss_pred ee
Q psy4771 276 LK 277 (337)
Q Consensus 276 ~~ 277 (337)
+.
T Consensus 532 ~~ 533 (557)
T PHA02713 532 VY 533 (557)
T ss_pred cc
Confidence 64
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=13 Score=37.34 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred ccEEEEcCCCCeeEEEeccccc---eeeEEEccCCCEEEEEeCCC------CEEEEEEeeC
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHF---ANGVELSADESFVIVAETMS------SRVHRYYLKG 278 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~---p~gia~~~dg~~lyva~~~~------~~I~~~~~~g 278 (337)
..+.+|||.+.+.+.+. .+.. ..+++.- +| .|||.-... ..|.+|+++.
T Consensus 432 ~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 432 NKVIRYDTVNNIWETLP-NFWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ceEEEECCCCCeEeecC-CCCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 46999999998876544 2222 2244433 44 699985421 3577888763
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=90.12 E-value=7 Score=36.72 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=37.0
Q ss_pred eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEE
Q psy4771 243 IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309 (337)
Q Consensus 243 ~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va 309 (337)
...+..-..+++++||+++-+... .+.|..|+...- .....+-...-+...++++.+|-+.-++
T Consensus 278 ~~~~~siSsl~VS~dGkf~AlGT~-dGsVai~~~~~l--q~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFLALGTM-DGSVAIYDAKSL--QRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred hhccCcceeEEEcCCCcEEEEecc-CCcEEEEEecee--eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 334556788999999986666554 788888886431 1111111111134566666666554444
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=90.06 E-value=22 Score=35.61 Aligned_cols=86 Identities=10% Similarity=0.191 Sum_probs=48.7
Q ss_pred cEEEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecC-CCCCCCceeECC
Q psy4771 228 RLIQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDS 302 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~ 302 (337)
+||++.++........+. +..+.-+.++-|++.++++.-....+..++++.........+... .-+...-|++.+
T Consensus 406 ~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss 485 (691)
T KOG2048|consen 406 KIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS 485 (691)
T ss_pred EEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC
Confidence 577777764322222222 223455677777777766665667788888875422221111211 112256788999
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
+|++.++..+.
T Consensus 486 dG~yiaa~~t~ 496 (691)
T KOG2048|consen 486 DGNYIAAISTR 496 (691)
T ss_pred CCCEEEEEecc
Confidence 99877777655
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=89.85 E-value=9.4 Score=36.95 Aligned_cols=72 Identities=8% Similarity=0.098 Sum_probs=44.7
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..||++.+-....+...+. +-+|+.||........-+.--.--..+||.++| .++++-..+++|+.
T Consensus 211 ~~gicfspsne~l~vsVG~-------------Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G-~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGY-------------DKKINIYDIRSQASTDRLTYSHPLSTVAFSECG-TYLCAGNSKGELIA 276 (673)
T ss_pred cCcceecCCccceEEEecc-------------cceEEEeecccccccceeeecCCcceeeecCCc-eEEEeecCCceEEE
Confidence 3577787754433333332 238888886543321111111123579999999 67788888999999
Q ss_pred EEeeCC
Q psy4771 274 YYLKGP 279 (337)
Q Consensus 274 ~~~~g~ 279 (337)
||+.+.
T Consensus 277 YD~R~~ 282 (673)
T KOG4378|consen 277 YDMRST 282 (673)
T ss_pred EecccC
Confidence 999763
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.84 Score=43.51 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-eE----EEecc---------------cccee
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-NK----VLIAN---------------LHFAN 250 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-~~----~~~~~---------------~~~p~ 250 (337)
..+.||.++-|.+ |||+++.. |.|..||-.+-. .+ +.+.+ ...|+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~--------------GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLH--------------GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp -----EEE-TTS-EEEEEETTT--------------TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred CceEeEEEccCCCEEEEEcccC--------------CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 4578999998876 99999873 455566543211 10 11111 12578
Q ss_pred eEEEccCCCEEEEEeCC
Q psy4771 251 GVELSADESFVIVAETM 267 (337)
Q Consensus 251 gia~~~dg~~lyva~~~ 267 (337)
-|.+|-||++|||+++-
T Consensus 378 MvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp -EEE-TTSSEEEEE---
T ss_pred eEEEccCCeEEEEEeec
Confidence 89999999999999853
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=89.41 E-value=15 Score=32.70 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=85.3
Q ss_pred cCccEEEeeCCeEEEEecCcEEEEEeCC--ceeEEEecCccc-cCcc-ccCccCCcceEEECCCCcEEEE---ECCCc--
Q psy4771 63 HGPEAVVKHKGDLYMGVDGGHILKLSGG--KLVPVVKLGKDC-YGFK-YEQQCGRPLGIKFDKNGALHVA---DAYFG-- 133 (337)
Q Consensus 63 ~~P~~i~~~~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~-~~~~-~~~~~~~P~Gl~~d~~G~lyVa---d~~~g-- 133 (337)
.|+-.++..+...|--....+|+|++-. .......+.... .+.. .......=..+++|..| |||. ....|
T Consensus 70 ~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~i 148 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNI 148 (250)
T ss_pred ccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcE
Confidence 3555555444444466678899999873 333122232111 0000 00111112378998887 4443 33343
Q ss_pred -EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCC
Q psy4771 134 -LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST 212 (337)
Q Consensus 134 -v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~ 212 (337)
|.++|+++-.+..-... ... .-..-| ++---|.||++++..
T Consensus 149 vvskld~~tL~v~~tw~T--~~~----------------------------------k~~~~n--aFmvCGvLY~~~s~~ 190 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNT--SYP----------------------------------KRSAGN--AFMVCGVLYATDSYD 190 (250)
T ss_pred EEEeeCcccCceEEEEEe--ccC----------------------------------chhhcc--eeeEeeEEEEEEECC
Confidence 67788876665544321 111 111122 222348899999874
Q ss_pred CccCceeeeeecCCccE-EEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 213 KYKSGLFEGLTSGSGRL-IQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v-~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.. ..+| +.||..+++...+.-. ......|..+|..+.||+=|. +.+..|++
T Consensus 191 ~~-----------~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 191 TR-----------DTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred CC-----------CcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 31 1233 6788877755433222 234456888898889999884 46666665
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=89.26 E-value=7.1 Score=39.42 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=78.3
Q ss_pred EEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCcc
Q psy4771 117 IKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNS 196 (337)
Q Consensus 117 l~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~ 196 (337)
++++++|...+|.-.+.|..+|.+++.+..... . . .......+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~---~-~---------------------------------ed~d~ita 67 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSG---S-N---------------------------------EDEDEITA 67 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccC---C-c---------------------------------cchhhhhe
Confidence 899999977777655668899998887751111 0 0 02334678
Q ss_pred EEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccce-eeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 197 VTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFA-NGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 197 v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p-~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
+++++|+...++-..+. .+-.|...+++....... ...| -.++++|-+ .|..+-...++|.+.
T Consensus 68 ~~l~~d~~~L~~a~rs~--------------llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VW 132 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQ--------------LLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVW 132 (775)
T ss_pred eeecCCccEEEEeeccc--------------eEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEE
Confidence 89999876444443321 222333334533222211 2233 578999888 677777777899999
Q ss_pred EeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 275 YLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 275 ~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
++++.. ...-..+.||....+.+.++-+
T Consensus 133 di~~~~---~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 133 DIKNGY---CTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred EeeCCE---EEEEecCCCceEEEEEeCCccc
Confidence 987542 2222233555555555555443
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=89.19 E-value=19 Score=37.52 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=38.3
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc--EEEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG--LYKVN 138 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g--v~~vd 138 (337)
.+.|.+...++.|-.||..+.+.+..|.. .-+|=+-++..|..+||.|--..| |++++
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tfrr---------endRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTFRR---------ENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeeeec---------cCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 45666888888888888765544444432 225667789999999998864455 44443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=20 Score=33.34 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=12.3
Q ss_pred CCCccEEEcCCCcEEEEcC
Q psy4771 192 QIPNSVTVDSDGMVYWSDS 210 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~ 210 (337)
...+++++.++|++|+...
T Consensus 215 ~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ccceeeeEcCCCCEEEEec
Confidence 4456777777777666543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=88.81 E-value=32 Score=35.90 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=85.5
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcce-------EEECCCCcEEEEEC---------CCc-E
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLG-------IKFDKNGALHVADA---------YFG-L 134 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~G-------l~~d~~G~lyVad~---------~~g-v 134 (337)
++.||+...+++++.+|..+.+....++.+..--+.......+.+ -.+ -++.+||..+ ..| |
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence 347887778999999987444444344432110000000011111 111 1457777632 134 8
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd~~~~ 213 (337)
+.+|.++|+...-...... .... | -..|. . +.....+.=.-+++|++ |.+|+......
T Consensus 339 ~A~Da~TGkl~W~~~~g~p-~~~~---~-----~~~g~------~------~~~gg~n~W~~~s~D~~~glvy~ptGn~~ 397 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNP-DPTA---P-----PAPGE------T------YTRNTPNSWSVASYDEKLGLVYLPMGNQT 397 (764)
T ss_pred EEEECCCCcEeeEEecCCC-Cccc---C-----CCCCC------E------eccCCCCccCceEEcCCCCeEEEeCCCcc
Confidence 8899999988766542100 0000 0 00000 0 00001111245678875 56887443211
Q ss_pred --c-cCceeeeeecCCccEEEEcCCCCeeEEEecc-------ccc---eeeEEEcc-CCC--EEEEEeCCCCEEEEEEee
Q psy4771 214 --Y-KSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-------LHF---ANGVELSA-DES--FVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 214 --~-~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-------~~~---p~gia~~~-dg~--~lyva~~~~~~I~~~~~~ 277 (337)
+ ..........-.+.|+.+|.+||+.+-.... ... |.=+.+.. ||+ .+.+.-+.++.++++|.+
T Consensus 398 pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 398 PDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred ccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 1 0000001122356899999999987543321 122 22222332 553 134444456788888865
Q ss_pred C
Q psy4771 278 G 278 (337)
Q Consensus 278 g 278 (337)
.
T Consensus 478 t 478 (764)
T TIGR03074 478 T 478 (764)
T ss_pred C
Confidence 3
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=88.73 E-value=3.1 Score=36.31 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=38.4
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEE-cCCCCe-------eEEEeccccceeeEEEccCCCEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQY-NPKTKK-------NKVLIANLHFANGVELSADESFVI 262 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~-d~~~~~-------~~~~~~~~~~p~gia~~~dg~~ly 262 (337)
.+...-+..+++|.||.-+.. |++++. .|+.+. ..+...+...+.-|.++++| .||
T Consensus 129 W~~f~~vfa~~~GvLY~i~~d---------------g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g-~L~ 192 (229)
T PF14517_consen 129 WNDFDAVFAGPNGVLYAITPD---------------GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDG-NLW 192 (229)
T ss_dssp GGGEEEEEE-TTS-EEEEETT---------------E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EE
T ss_pred CccceEEEeCCCccEEEEcCC---------------CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCC-cEE
Confidence 344567778889988866643 466665 333321 11122345568889999998 588
Q ss_pred EEeCCCCEEEEEEe
Q psy4771 263 VAETMSSRVHRYYL 276 (337)
Q Consensus 263 va~~~~~~I~~~~~ 276 (337)
..+ ..+.|+|+..
T Consensus 193 ~V~-~~G~lyr~~~ 205 (229)
T PF14517_consen 193 AVK-SNGKLYRGRP 205 (229)
T ss_dssp EE--ETTEEEEES-
T ss_pred EEe-cCCEEeccCC
Confidence 774 4678887764
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=88.70 E-value=0.33 Score=29.57 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.3
Q ss_pred CCCccEEEcCCCcEEEEcCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~ 211 (337)
..+++|++|++|++|++-.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 35899999999999998765
|
SBBP stands for Seven Bladed Beta Propeller. |
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.44 Score=29.04 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.5
Q ss_pred CCcceEEECCCCcEEEEEC
Q psy4771 112 GRPLGIKFDKNGALHVADA 130 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~ 130 (337)
..+.+|++|++|++||+-.
T Consensus 13 ~~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eeEEEEEECCCCCEEEEEe
Confidence 4589999999999999953
|
SBBP stands for Seven Bladed Beta Propeller. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.62 E-value=15 Score=35.00 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=53.9
Q ss_pred cEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE--EEeccccc---eeeEEEccCCCEEEEEeCCC-
Q psy4771 196 SVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK--VLIANLHF---ANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 196 ~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~--~~~~~~~~---p~gia~~~dg~~lyva~~~~- 268 (337)
.++..+||+ +|.+......... .....-.|+++...+...+ .+...-.. --++..++|+++|++.....
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~----~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTS----DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-----CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred eEEEeCCCCEEEEEEeCcccccc----cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 388888876 5555543221000 0000125777776555432 44433222 34788999999988755443
Q ss_pred --CEEEEEEeeCC--CCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 269 --SRVHRYYLKGP--KQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 269 --~~I~~~~~~g~--~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+.|+.+++... .......+....++.-..+. ...+.+|+-....
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~-~~~~~~yi~Tn~~ 297 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD-HHGDRLYILTNDD 297 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE-EETTEEEEEE-TT
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE-ccCCEEEEeeCCC
Confidence 46777777543 12233444433333111121 2244577666544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=88.41 E-value=19 Score=37.90 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+.-..++++|++.+.|+-+. +.|...+..+.+...... | -
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~------~---------------------------------H 170 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR------G---------------------------------H 170 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeee------c---------------------------------c
Confidence 34557899999988888654 447777766543222221 1 1
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-c------ccceeeEEEccCCCEEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-N------LHFANGVELSADESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~------~~~p~gia~~~dg~~lyv 263 (337)
...+-|+++||-|..+.+.+..+ .=.||+.+ +-.++.... . -.+-.-+-++|||.+|-+
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDr------------tikvwrt~--dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDR------------TLKVWRTS--DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred cccccceEECCccCeeeeecCCc------------eEEEEEcc--cceeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence 34578899999887655544422 01334422 222222221 1 223456778899988877
Q ss_pred EeCCCC
Q psy4771 264 AETMSS 269 (337)
Q Consensus 264 a~~~~~ 269 (337)
....++
T Consensus 237 ~nA~n~ 242 (942)
T KOG0973|consen 237 PNAVNG 242 (942)
T ss_pred hhhccC
Confidence 776543
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=88.34 E-value=8.9 Score=35.65 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=64.4
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
.....+...+||..+++.+... -.+...|+++++...+. .++..-.-+-++|||+.|+.+... +
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs-------------ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d--a 260 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS-------------SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD--A 260 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc-------------ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc--c
Confidence 3456677778888887766432 26777888888765555 445555668899999877777644 6
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
+.+++-... .-..+.+.- .+|.-.+-+-+++|. +..+...
T Consensus 261 vfrlw~e~q-~wt~erw~l-gsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 261 VFRLWQENQ-SWTKERWIL-GSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred eeeeehhcc-cceecceec-cCCceeeeeecCCCCEEEEEEcC
Confidence 666663221 122233332 345666777888886 4444433
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=88.16 E-value=8.1 Score=35.87 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=40.6
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc--EEEEEcCCCe
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG--LYKVNVTTGQ 143 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g--v~~vd~~~g~ 143 (337)
..| .+...|.|+.|+..+++.+..+. ..-+.-..|+|+++|.+..+.+..| |+.+...+|+
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~---------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTIN---------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEE---------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence 345 56667888888876666554442 2224456899999999998877777 5555655554
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=87.94 E-value=22 Score=32.72 Aligned_cols=28 Identities=4% Similarity=0.165 Sum_probs=23.7
Q ss_pred eeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 250 NGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 250 ~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.-+++.+||++||+.......|...++.
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeeh
Confidence 4467889999999999888899998885
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=29 Score=34.06 Aligned_cols=47 Identities=6% Similarity=0.109 Sum_probs=26.7
Q ss_pred cEEEEcCCCCeeEEEeccccce---eeEEEccCCCEEEEEeCCC-----CEEEEEEee
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFA---NGVELSADESFVIVAETMS-----SRVHRYYLK 277 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyva~~~~-----~~I~~~~~~ 277 (337)
.+.+|||++++.+.+. .+..| .|+++- +| .|||.-... +.|.+|++.
T Consensus 416 ~~e~ydp~~~~W~~~~-~m~~~r~~~~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 416 NAEFYCESSNTWTLID-DPIYPRDNPELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ceEEecCCCCcEeEcC-CCCCCccccEEEEE-CC-EEEEECCcCCCcccceEEEEECC
Confidence 4567899888776554 33322 344443 44 688875421 345566653
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=87.86 E-value=7.8 Score=36.23 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=40.2
Q ss_pred CeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeE
Q psy4771 73 GDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQT 144 (337)
Q Consensus 73 g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~ 144 (337)
..-| +.+..+++-.||+ .+.+++..|... -..-..+..+++| .||+++....+..||..++++
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFL---------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccc---------cCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 3444 7788888888887 334445444211 0113468888998 677777555699999876654
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=87.58 E-value=30 Score=33.86 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=77.6
Q ss_pred CcceEEECCCCcEEEEECCCc-EEEEEcCCCeEE--EEeccccccCCCCCCCCCceeeCCCCCcc----ccc--ceeeec
Q psy4771 113 RPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTE--QLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTE--QLISMD 183 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~--~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~--~v~~~~ 183 (337)
.|...+++++|.++.+--..| |...+..+-.+. ..+. .++..|. -=..|+++.||+++ .++ .+..+.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-~AH~~g~---~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-DAHLPGQ---DITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEee-eccCCCC---ceeEEEeccccchhhhccCCCceeeeecc
Confidence 467889999998855533344 555554222222 1221 1122322 12458999999998 233 333333
Q ss_pred ccc------CCCC-CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEc
Q psy4771 184 TEI------DGAK-PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELS 255 (337)
Q Consensus 184 ~~~------~~~~-~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~ 255 (337)
..- .+.+ ..--.+.+++|+..|.+|-.+.. .....|.|+.||+.+-+...-+ -.-....-+.|.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~--------~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP--------NGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEeccccc--------CCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 110 0111 11235888999999999887632 1234567888887544321111 011122345566
Q ss_pred cCCCEEEEEeCCCCEEEEEE
Q psy4771 256 ADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 256 ~dg~~lyva~~~~~~I~~~~ 275 (337)
|.=+.|++.... +.+++|.
T Consensus 467 pkLNQi~~gsgd-G~~~vyY 485 (641)
T KOG0772|consen 467 PKLNQIFAGSGD-GTAHVYY 485 (641)
T ss_pred chhhheeeecCC-CceEEEE
Confidence 655556655433 4555543
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=87.57 E-value=16 Score=36.79 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=62.0
Q ss_pred eEEECCCCcEEEEECCC-------cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 116 GIKFDKNGALHVADAYF-------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 116 Gl~~d~~G~lyVad~~~-------gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
|++. -+|.||++-... .+..+||.+++-+.+.....
T Consensus 422 gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~------------------------------------ 464 (571)
T KOG4441|consen 422 GVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT------------------------------------ 464 (571)
T ss_pred EEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc------------------------------------
Confidence 4443 367999995421 27788998887776654211
Q ss_pred CCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc---eeeEEEccCCCEEEEEe
Q psy4771 189 AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF---ANGVELSADESFVIVAE 265 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~---p~gia~~~dg~~lyva~ 265 (337)
...-.++++- +|.||+.-..... ...-.|.+|||.+.+.+.+. .+.. ..|++.. +..||+..
T Consensus 465 --~R~~~g~a~~-~~~iYvvGG~~~~---------~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~~~~--~~~ly~vG 529 (571)
T KOG4441|consen 465 --RRSGFGVAVL-NGKIYVVGGFDGT---------SALSSVERYDPETNQWTMVA-PMTSPRSAVGVVVL--GGKLYAVG 529 (571)
T ss_pred --ccccceEEEE-CCEEEEECCccCC---------CccceEEEEcCCCCceeEcc-cCccccccccEEEE--CCEEEEEe
Confidence 1122344444 5689977654220 01114899999998887653 3332 2344443 44699887
Q ss_pred CCC-----CEEEEEEe
Q psy4771 266 TMS-----SRVHRYYL 276 (337)
Q Consensus 266 ~~~-----~~I~~~~~ 276 (337)
... +.|..|++
T Consensus 530 G~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 530 GFDGNNNLNTVECYDP 545 (571)
T ss_pred cccCccccceeEEcCC
Confidence 532 34555554
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=87.53 E-value=31 Score=36.00 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=42.3
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCc-----------cccCccccCccCCcceE--------EECCCCcEEEEECC
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGK-----------DCYGFKYEQQCGRPLGI--------KFDKNGALHVADAY 131 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~P~Gl--------~~d~~G~lyVad~~ 131 (337)
.++.+|+...+++++.+|..+.+.+-++.- .|++..... .|.+- -...++++|+....
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~---~p~~~~~~~~~~~p~~~~~rV~~~T~D 269 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYD---APAAAAGPAAPAAPADCARRIILPTSD 269 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEec---CCcccccccccccccccCCEEEEecCC
Confidence 589999888889999999743333322210 122211000 01000 00123488888765
Q ss_pred CcEEEEEcCCCeEEEEe
Q psy4771 132 FGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 132 ~gv~~vd~~~g~~~~l~ 148 (337)
..++.+|.++|+...-.
T Consensus 270 g~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 270 ARLIALDADTGKLCEDF 286 (764)
T ss_pred CeEEEEECCCCCEEEEe
Confidence 66999999988876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=87.47 E-value=30 Score=33.81 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=100.3
Q ss_pred CCeEEEEecCcEEEEEeCCce-eEEEecC--ccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGKL-VPVVKLG--KDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~-~~~~~~g--~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l 147 (337)
+-.+|++..+..|..||-.+. ..+..|. +.|+ +..-+.+.+.+.|..+++-+++ ....+|.+|-++..+
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E-------~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~ 251 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE-------THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEF 251 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCccc-------ccccceeeecCCCCeEEEEecCcceeEEccCCceeeee
Confidence 345667777777777775221 1111121 1222 2334678888888555554444 477788887666655
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC-CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecC
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK-PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~-~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~ 225 (337)
....+-+ .+....+. ....++..+.|+.. .++|.+. +.
T Consensus 252 ~KGDQYI----------------------------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~------------Dg 291 (641)
T KOG0772|consen 252 SKGDQYI----------------------------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSY------------DG 291 (641)
T ss_pred eccchhh----------------------------hhhhccCCceeeeeccccccCcccceEEecC------------CC
Confidence 4311100 00000000 12234455555432 4444432 12
Q ss_pred CccEEEEcCCCCeeEEEecc-----ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec--CCCC-CCCc
Q psy4771 226 SGRLIQYNPKTKKNKVLIAN-----LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID--GLPG-LPDN 297 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~--~~~g-~Pdg 297 (337)
.-|||-++....+..++... -..|...+|++||+ ++.+....+.|+..+. +....+....+. +.+| -...
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeE
Confidence 22566655444444443321 23567889999996 5666677788887775 332222222221 2332 2567
Q ss_pred eeECCCCCEEEEecCC
Q psy4771 298 VKRDSKGNFLVSLVCP 313 (337)
Q Consensus 298 i~~d~dG~l~va~~~~ 313 (337)
|++..||++..+-...
T Consensus 370 i~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFD 385 (641)
T ss_pred EEeccccchhhhccCC
Confidence 8899999877766443
|
|
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=87.34 E-value=20 Score=31.56 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=29.2
Q ss_pred CCcceEEECCC-CcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 112 GRPLGIKFDKN-GALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 112 ~~P~Gl~~d~~-G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
.+-.||.+-|. |.||-.....+|+.||+.+|..+.+
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~v 63 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPV 63 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEe
Confidence 45668888776 7999886667799999999987776
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=87.24 E-value=26 Score=32.84 Aligned_cols=165 Identities=13% Similarity=0.164 Sum_probs=101.0
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEe-C-C---ceeEEEe-------c---CccccC-ccccCccCCcceEEECC
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLS-G-G---KLVPVVK-------L---GKDCYG-FKYEQQCGRPLGIKFDK 121 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~-~-~---~~~~~~~-------~---g~~~~~-~~~~~~~~~P~Gl~~d~ 121 (337)
|--..-++|.+ .++..+ ++..+..|--|+ + . ..+.+.. . +....+ .-.+..-.....+.+.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 33335577776 667777 777787776676 1 1 1111100 0 000000 00012223345788888
Q ss_pred CCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC
Q psy4771 122 NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS 201 (337)
Q Consensus 122 ~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~ 201 (337)
.+.+|-+...|.|...|..++....-.. .-...+++...+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~----------------------------------------~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLT----------------------------------------TNKSLNCISYSP 310 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeee----------------------------------------cCcceeEeeccc
Confidence 8899988888899999988665432221 122357777777
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe----ccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI----ANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~----~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.-++..+..+.. .+..+||.++.-..+. ..-.+-.++-++|...+.+++-+..+.+...|+.
T Consensus 311 ~~~Ll~~gssdr--------------~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 311 LSKLLASGSSDR--------------HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred ccceeeecCCCC--------------ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 666776666533 5667788876543332 2334677899999888999999999999988875
Q ss_pred C
Q psy4771 278 G 278 (337)
Q Consensus 278 g 278 (337)
.
T Consensus 377 S 377 (423)
T KOG0313|consen 377 S 377 (423)
T ss_pred c
Confidence 4
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=86.98 E-value=3.8 Score=38.25 Aligned_cols=52 Identities=13% Similarity=0.322 Sum_probs=34.6
Q ss_pred cCCccEEEEcCCC---CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 224 SGSGRLIQYNPKT---KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 224 ~~~G~v~~~d~~~---~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
+..|-++.+|.-. +..+.++..+..-..|++++|+++|.-+|... .|++.+.
T Consensus 126 dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~y 180 (390)
T KOG3914|consen 126 DKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRY 180 (390)
T ss_pred eecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEec
Confidence 3445555555332 55556677778889999999999999999753 3444333
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.84 E-value=6.6 Score=36.72 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=38.3
Q ss_pred cEEEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCC-CCeeEEEeccccceeeEEEccCCCEEEEEe
Q psy4771 196 SVTVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TKKNKVLIANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 196 ~v~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~~~~~~~~~~~~p~gia~~~dg~~lyva~ 265 (337)
-+.+|+++ .|||+..... ...-.||+++.+ +++.+.+-.....-..+.++|||+++..+-
T Consensus 285 i~~~d~~~~~iyf~a~~~~----------p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 285 ILGWDEDNNRIYFTANGDN----------PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEECTSSEEEEEESSGG----------TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred cceEcCCCCEEEEEecCCC----------CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 45677765 5998877522 112378999988 777766554332225899999998665544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=86.41 E-value=16 Score=33.19 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
...++...+||+..++....+ +|..+|.++|+... ....-.+-|.++...-|-.+..+-+..+++
T Consensus 92 AVM~l~~~~d~s~i~S~gtDk--------------~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGTDK--------------TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred eeEeeeeccCCCEEEEecCCc--------------eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 457778888888766665533 88888888886532 333445667776666666677766667777
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
..+|+.
T Consensus 158 kl~D~R 163 (338)
T KOG0265|consen 158 KLWDIR 163 (338)
T ss_pred EEEeec
Confidence 777764
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=86.17 E-value=8.3 Score=35.23 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=12.9
Q ss_pred cceEEECCCCcEEEEECCCcEEEE
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKV 137 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~v 137 (337)
...+.|..|+.-+.+.+.....++
T Consensus 309 vt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred eeEEEEccCcchhhcccccceEEE
Confidence 456788888733333333444444
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=86.15 E-value=5.6 Score=37.14 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=56.6
Q ss_pred ecCCccEEEEcCCCCeeEEEe--ccccc-eeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCcee
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI--ANLHF-ANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~--~~~~~-p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~ 299 (337)
....+.|-.||+..+. +.+. +-... -..+++.|+|++||++++. +.+..||..+.++.. .+..+..|-+.+|.
T Consensus 222 ~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g--~~~kg~tGsirsih 297 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG--CGLKGITGSIRSIH 297 (412)
T ss_pred EecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec--cccCCccCCcceEE
Confidence 4455688999988543 2322 11222 2568889999999999974 678999987654322 22344556788888
Q ss_pred ECCCCCEEEEecC
Q psy4771 300 RDSKGNFLVSLVC 312 (337)
Q Consensus 300 ~d~dG~l~va~~~ 312 (337)
.++.+.+..+..-
T Consensus 298 ~hp~~~~las~GL 310 (412)
T KOG3881|consen 298 CHPTHPVLASCGL 310 (412)
T ss_pred EcCCCceEEeecc
Confidence 8887766665543
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=86.12 E-value=19 Score=33.62 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=43.5
Q ss_pred cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 245 NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 245 ~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+...-..+-++|-+..|..+....+.|..||+.-...-. .+..+ -.+.+|+..+++..+|+....
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~---mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILT---MRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeee---ccccceecCccccceeecccc
Confidence 444446788888887888888788899999985332222 22222 246788888888777776554
|
|
| >PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats | Back alignment and domain information |
|---|
Probab=86.11 E-value=0.9 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.4
Q ss_pred CCceeECCCCCEEEEec
Q psy4771 295 PDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 295 Pdgi~~d~dG~l~va~~ 311 (337)
...|..|++|++|++..
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 45788999999999974
|
These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=85.50 E-value=36 Score=32.82 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++++..+|.+.++-.+.| ++.++..++.+..+.. ..|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~----Hkg---------------------------------- 277 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ----HKG---------------------------------- 277 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc----cCC----------------------------------
Confidence 4467999999999999987788 5555666655555432 111
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~ 269 (337)
-.-.+....+|+...+ ...+|++..+|..+|+...-..--..| -.|.+-.+. =+++....+
T Consensus 278 --PI~slKWnk~G~yilS--------------~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~ 339 (524)
T KOG0273|consen 278 --PIFSLKWNKKGTYILS--------------GGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDG 339 (524)
T ss_pred --ceEEEEEcCCCCEEEe--------------ccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCc
Confidence 1234555566653322 233567778887777665433322233 234443333 456666678
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
+|+++.++..+. ...|.. ..|-...|..++.|.|..++.
T Consensus 340 ~i~V~kv~~~~P--~~t~~G-H~g~V~alk~n~tg~LLaS~S 378 (524)
T KOG0273|consen 340 CIHVCKVGEDRP--VKTFIG-HHGEVNALKWNPTGSLLASCS 378 (524)
T ss_pred eEEEEEecCCCc--ceeeec-ccCceEEEEECCCCceEEEec
Confidence 888888865322 233443 334456677776666655553
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=85.20 E-value=29 Score=31.52 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=43.3
Q ss_pred eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEE-CCCcEEEEEcCCCeEEEE
Q psy4771 71 HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD-AYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad-~~~gv~~vd~~~g~~~~l 147 (337)
.+|..+ ++-.+..|+-|.. +..+-+.+.. ...+...++.+.++++.+++- ....++.+|.++|+...-
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk---------gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYGDCENFWVLK---------GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred CCCCeEeecCCcceEEEEeccccccceeeec---------cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 366666 7777888888863 4433332221 122446789999999665554 345699999998875543
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=85.03 E-value=32 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=19.5
Q ss_pred ceEEECCCCcEEEEEC--------------CCcEEEEEcCCCeEEEEecc
Q psy4771 115 LGIKFDKNGALHVADA--------------YFGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~--------------~~gv~~vd~~~g~~~~l~~~ 150 (337)
+.+...++|++++... ...|+.+| .+|++....+.
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~ 241 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDF 241 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEG
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEeh
Confidence 5788889996665433 12488899 67777766553
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=84.77 E-value=19 Score=33.96 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADES 259 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~ 259 (337)
-+-+++..+|++..++.+.. ..++.+|...|+..... ++-.+++|+|++|-++
T Consensus 125 diydL~Ws~d~~~l~s~s~d--------------ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSVD--------------NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred chhhhhccCCCceeeeeecc--------------ceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 35677777777655555432 25666666677665443 4567899999998774
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=84.73 E-value=44 Score=34.06 Aligned_cols=150 Identities=10% Similarity=0.094 Sum_probs=83.7
Q ss_pred EEe--eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeE
Q psy4771 68 VVK--HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQT 144 (337)
Q Consensus 68 i~~--~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~ 144 (337)
+++ ++..||+...+ +|..++-........++++ .-...-..+++++|+...++-...+ +..++..+|++
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~-------ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ 96 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSN-------EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL 96 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCCc-------cchhhhheeeecCCccEEEEeeccceEEEEEcccchH
Confidence 555 45567766544 4666654222221223322 2234456899999984444433333 55567666643
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC-CccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI-PNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~-pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
..... .- +.. .--+++++.|.+.-+-
T Consensus 97 irswK----a~-----------------------------------He~Pvi~ma~~~~g~LlAtg-------------- 123 (775)
T KOG0319|consen 97 IRSWK----AI-----------------------------------HEAPVITMAFDPTGTLLATG-------------- 123 (775)
T ss_pred hHhHh----hc-----------------------------------cCCCeEEEEEcCCCceEEec--------------
Confidence 33221 00 111 2457788877554332
Q ss_pred cCCccEEEEcCCCCeeEEEeccccc-eeeEEEccCCCE-EEEEeCCCCEEEEEEeeC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIANLHF-ANGVELSADESF-VIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~~~~-p~gia~~~dg~~-lyva~~~~~~I~~~~~~g 278 (337)
...|++-++|-+.+..+.-..++.. ...+.|.|+-.+ +.++....+.|..+++..
T Consensus 124 gaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 124 GADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred cccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 2345777777777777666666443 456777776543 456666678899998864
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=84.70 E-value=38 Score=32.46 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
+.+++++-+.-++..+.+... .=+||.+...-.++..+.. -..+-|.++|+.+|++|+++-...+|
T Consensus 382 Witsla~i~~sdL~asGS~~G------------~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSG------------CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred ceeeeEecccCceEEecCCCC------------ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccc
Confidence 677788777666665554321 1267777654334433221 13467999999999999998777777
Q ss_pred EEEEEee
Q psy4771 271 VHRYYLK 277 (337)
Q Consensus 271 I~~~~~~ 277 (337)
+-|....
T Consensus 450 lGRW~~~ 456 (479)
T KOG0299|consen 450 LGRWWCL 456 (479)
T ss_pred cceeeEe
Confidence 7776653
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=83.95 E-value=48 Score=32.94 Aligned_cols=68 Identities=10% Similarity=0.289 Sum_probs=36.0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc-ce-eeEEEcc--CCCEEEEEeC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH-FA-NGVELSA--DESFVIVAET 266 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~-~p-~gia~~~--dg~~lyva~~ 266 (337)
...+..+.+..+|- ....+...|.++.||..+.+...+.+... .| .-+.+-+ +++.|+-+|.
T Consensus 228 ~~svTal~F~d~gL--------------~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk 293 (703)
T KOG2321|consen 228 APSVTALKFRDDGL--------------HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK 293 (703)
T ss_pred cCcceEEEecCCce--------------eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch
Confidence 44566777776652 11234456899999988776544444321 22 2233322 3445665553
Q ss_pred CCCEEEEEE
Q psy4771 267 MSSRVHRYY 275 (337)
Q Consensus 267 ~~~~I~~~~ 275 (337)
+|.++|
T Consensus 294 ---~~~kiW 299 (703)
T KOG2321|consen 294 ---RILKIW 299 (703)
T ss_pred ---HHhhhc
Confidence 444444
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=83.76 E-value=32 Score=30.75 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=31.3
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcC
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVT 140 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~ 140 (337)
.+.+.+...+..|.+|+--..+....+-. -+.-.-+...|+| .+.+.+....|..+|..
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~----------~~eni~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIET----------KGENINITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeec----------cCcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence 34555777788888887522222211110 1112346777887 44444444557777754
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.47 E-value=12 Score=35.60 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=57.9
Q ss_pred CccEEEcCCCc-EEEE-cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce--eeEEEccCCCEEEEEeCCC-
Q psy4771 194 PNSVTVDSDGM-VYWS-DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA--NGVELSADESFVIVAETMS- 268 (337)
Q Consensus 194 pn~v~vd~~G~-lyvt-d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p--~gia~~~dg~~lyva~~~~- 268 (337)
..+..+++||+ +.++ +.+.. ..-.|+.+|.++|+. +.+.+..+ .++++.+|++.+|.+....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~-----------e~~~l~v~Dl~tg~~--l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGS-----------EWYTLRVFDLETGKF--LPDGIENPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTS-----------SEEEEEEEETTTTEE--EEEEEEEEESEEEEECTTSSEEEEEECSTT
T ss_pred eeeeeECCCCCEEEEEecCCCC-----------ceEEEEEEECCCCcC--cCCcccccccceEEEeCCCCEEEEEEeCcc
Confidence 34677888887 3333 32211 112688999988864 33343333 3499999988887776443
Q ss_pred ---------CEEEEEEeeCCCCCceeeeecCCCCC-CCceeECCCCC-EEEEecCC
Q psy4771 269 ---------SRVHRYYLKGPKQGKSEVFIDGLPGL-PDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 269 ---------~~I~~~~~~g~~~~~~~~~~~~~~g~-Pdgi~~d~dG~-l~va~~~~ 313 (337)
++|++..+.........+|-+..+.+ --++..+.||+ +.+.....
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 34666665332111233443322222 23677889987 45555444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=83.04 E-value=13 Score=36.00 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
....+++.+|-++-|+.-+ +|.|.++|..+..+. .+...-.....|.+++||..||-. .-.++|
T Consensus 511 aCyALa~spDakvcFsccs--------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG-GlDntv 575 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCS--------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG-GLDNTV 575 (705)
T ss_pred hhhhhhcCCccceeeeecc--------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC-CCccce
Confidence 3567888999888887765 568888888755432 223334567889999999877753 345788
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
...|+.
T Consensus 576 RcWDlr 581 (705)
T KOG0639|consen 576 RCWDLR 581 (705)
T ss_pred eehhhh
Confidence 888875
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=82.76 E-value=24 Score=34.93 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCeEEEEecCcEEEEEeCCc---eeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGK---LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
.|+|-++..+|.+-.||+-. +..+ .................+..+.|+.+| ++-|..+...++.+|....+...+
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l-~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTL-DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred cceEEecccCceEEEecchhhhhheee-ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 55666888899888898721 1111 111110000001233457889998888 666665434488889876554444
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSG 227 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G 227 (337)
.+. .+. + +......+.-+....++-+|..
T Consensus 266 kdh----~~e---~----------------------------pi~~l~~~~~~~q~~v~S~Dk~---------------- 294 (703)
T KOG2321|consen 266 KDH----GYE---L----------------------------PIKKLDWQDTDQQNKVVSMDKR---------------- 294 (703)
T ss_pred ccc----CCc---c----------------------------ceeeecccccCCCceEEecchH----------------
Confidence 431 110 0 1111111111222235544443
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.+-.+|..+|+.-.......--|.+|+-|+...++++.. +..+..|.+
T Consensus 295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~yyi 342 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTYYI 342 (703)
T ss_pred HhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeEEc
Confidence 233355666766666666667899999998876666553 455666665
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=82.69 E-value=36 Score=30.53 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=38.9
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
++|.+|++..|+..+.+|+.....+.+ ..|.| .. -.+-++++ +|.||+|-....+.+++++.+....+
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVyk--skcgG----~~---f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYK--SKCGG----GT---FVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEe--cccCC----ce---eccceecCCCceEEEEeccceEEEEccCCCCccee
Confidence 467777777777777777633222221 22322 11 12334555 67899887655588888776644333
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=54 Score=32.45 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=36.5
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee-e-EEEccCCCEEEEEeCCC--------CE
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN-G-VELSADESFVIVAETMS--------SR 270 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~-g-ia~~~dg~~lyva~~~~--------~~ 270 (337)
-+|+||+....... ......+++||+.+++.+.+.. +..+. + .+..-++ .||+.-... +.
T Consensus 388 ~~~~iYv~GG~~~~--------~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 388 VNNLIYVIGGISKN--------DELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred ECCEEEEECCcCCC--------CcccceEEEEeCCCCeeeecCC-CCccccCceEEEECC-EEEEECCccCCCCCcccce
Confidence 35789986542110 0112478999999887765432 22221 1 1222244 688875321 34
Q ss_pred EEEEEeeC
Q psy4771 271 VHRYYLKG 278 (337)
Q Consensus 271 I~~~~~~g 278 (337)
+++|++..
T Consensus 458 v~~yd~~~ 465 (534)
T PHA03098 458 VESYNPVT 465 (534)
T ss_pred EEEecCCC
Confidence 88888753
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.30 E-value=36 Score=30.36 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.1
Q ss_pred CcceEEECCC-CcEEEEECCCcEEEEEcC
Q psy4771 113 RPLGIKFDKN-GALHVADAYFGLYKVNVT 140 (337)
Q Consensus 113 ~P~Gl~~d~~-G~lyVad~~~gv~~vd~~ 140 (337)
.-.|+..|.+ |.||+++..-+||++..+
T Consensus 206 QTEG~VaDdEtG~LYIaeEdvaiWK~~Ae 234 (364)
T COG4247 206 QTEGMVADDETGFLYIAEEDVAIWKYEAE 234 (364)
T ss_pred cccceeeccccceEEEeeccceeeecccC
Confidence 3568888776 899999877789998654
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=81.76 E-value=55 Score=33.81 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=19.1
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
...+++.|..+|....+-...+ +.+...++++
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 3467899999984444433334 4445555665
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=81.58 E-value=67 Score=32.98 Aligned_cols=191 Identities=17% Similarity=0.171 Sum_probs=94.1
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
.-.++.+ .+..+..+-+++.|.-|+....+.+.+++ |+.-.+-.|-|.++.+|.-..+| +..+|...
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~-----------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT-----------CGYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEec-----------cccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 4456666 44445556666778778766555555442 34566777777766666655566 66666554
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCc-cCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY-KSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~-~~~~~~ 220 (337)
........ ..+ ...-.++..||+.=++|-+..+. .-|-..
T Consensus 444 ~~l~Eti~---AHd------------------------------------gaIWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 444 ASLVETIR---AHD------------------------------------GAIWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred hhhhhhhh---ccc------------------------------------cceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 33221111 011 12345666666665555443221 000011
Q ss_pred eeecCCc---cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCc
Q psy4771 221 GLTSGSG---RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297 (337)
Q Consensus 221 ~~~~~~G---~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdg 297 (337)
...+-.| +++.+-- .+ ..+--.-.-.+.+||||++|-|+- -.++|.+|.++.-+. -...+...+|- -.
T Consensus 485 l~~~~~gt~~k~lsl~~----~r-tLel~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDtlKF-flsLYGHkLPV--~s 555 (888)
T KOG0306|consen 485 LVVSVPGTQKKVLSLKH----TR-TLELEDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDTLKF-FLSLYGHKLPV--LS 555 (888)
T ss_pred EEeccCcccceeeeecc----ce-EEeccccEEEEEEcCCCcEEEEEe-ccCeEEEEEecceee-eeeecccccce--eE
Confidence 1111111 1111110 00 111112345788999998666655 468999999875321 01111112332 34
Q ss_pred eeECCCCCEEEEecCC
Q psy4771 298 VKRDSKGNFLVSLVCP 313 (337)
Q Consensus 298 i~~d~dG~l~va~~~~ 313 (337)
|-+.+|+++.|+..+.
T Consensus 556 mDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSAD 571 (888)
T ss_pred EeccCCcCeEEeccCC
Confidence 5556667766666544
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=81.49 E-value=13 Score=34.41 Aligned_cols=49 Identities=6% Similarity=0.106 Sum_probs=32.1
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.|-.++..+++......+ .-.|||-..=...+.|+-+..++|.-+++..
T Consensus 341 TikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred eEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccc
Confidence 555566556654333322 3467776644447999999999999888863
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=81.29 E-value=50 Score=31.27 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc
Q psy4771 112 GRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG 174 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~ 174 (337)
..+..++..++++..++.+. +.++.+|...|++...... ... ++++++-|+-++.+
T Consensus 124 ~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d---h~~----yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD---HEH----YVQGVAWDPLNQYV 180 (434)
T ss_pred cchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc---ccc----ccceeecchhhhhh
Confidence 44778999999877666544 4588888877877666542 111 46777777777766
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=80.42 E-value=58 Score=31.48 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=75.9
Q ss_pred CC-eEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCC-cceEEECCCCcEEEEECCCcEEEEEcCCC-eEEEE
Q psy4771 72 KG-DLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGR-PLGIKFDKNGALHVADAYFGLYKVNVTTG-QTEQL 147 (337)
Q Consensus 72 ~g-~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-P~Gl~~d~~G~lyVad~~~gv~~vd~~~g-~~~~l 147 (337)
++ .+.++..+|.|--||.-.. ..+..+. ++. -..+.+-+.|.++++-.++.+..+|.-+| +....
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln-----------hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-----------HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEec-----------CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 44 4559999998888886221 2333331 223 34678889998998876677888887633 32111
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCC
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGS 226 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~ 226 (337)
.. . -......+.+..++. |+ + ..-+
T Consensus 234 ~~---~------------------------------------H~KtVTcL~l~s~~~rLl-S--------------~sLD 259 (487)
T KOG0310|consen 234 MF---N------------------------------------HNKTVTCLRLASDSTRLL-S--------------GSLD 259 (487)
T ss_pred hh---c------------------------------------ccceEEEEEeecCCceEe-e--------------cccc
Confidence 10 0 122356777766664 33 2 2234
Q ss_pred ccEEEEcCCCCeeEEEecccccee---eEEEccCCCEEEEEeCC
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHFAN---GVELSADESFVIVAETM 267 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~p~---gia~~~dg~~lyva~~~ 267 (337)
|.|-.||..+-+ +...+.+|. .|+++||++++++.-++
T Consensus 260 ~~VKVfd~t~~K---vv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 260 RHVKVFDTTNYK---VVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred cceEEEEccceE---EEEeeecccceeeEEecCCCceEEEeccc
Confidence 566667643333 344555665 57999999888876654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=80.33 E-value=55 Score=31.51 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=76.6
Q ss_pred cceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
-..++-++.|...++..-. .|+.....+|....+... -..
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a---------------------------------------HYQ 124 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA---------------------------------------HYQ 124 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh---------------------------------------hcc
Confidence 4688999999888886344 477777777764433320 134
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCC-------CCee---EEEeccccceeeEEEccCC--CE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-------TKKN---KVLIANLHFANGVELSADE--SF 260 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-------~~~~---~~~~~~~~~p~gia~~~dg--~~ 260 (337)
....+.+..||..+||... +|.|+.+..- ++.+ ..+.++--.-..+.++..| .+
T Consensus 125 ~ITcL~fs~dgs~iiTgsk--------------Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSK--------------DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR 190 (476)
T ss_pred ceeEEEEeCCCcEEEecCC--------------CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccce
Confidence 4677888888888877765 2333333210 0000 0011111111233333321 13
Q ss_pred EEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 261 VIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 261 lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
||-+ +..+++..+++..+.+-..- ..|--+..+++|+.++ +|++...+
T Consensus 191 l~Ta-S~D~t~k~wdlS~g~LLlti----~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 191 LYTA-SEDRTIKLWDLSLGVLLLTI----TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred EEEe-cCCceEEEEEeccceeeEEE----ecCCcceeEEEcccccEEEecCCcc
Confidence 4433 34567888888654221111 1344578899998776 88887666
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=80.23 E-value=48 Score=30.46 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=88.9
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEEC-CCcEEEEEc
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA-YFGLYKVNV 139 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~-~~gv~~vd~ 139 (337)
.+++. .+| .|.++..+..|..||- |....-..|.. --.+..+.|.. +..|+.- ...-+.++.
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~ 136 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS------------PVWGAQWHPRKRNKCVATIMEESPVVIDF 136 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC------------ccceeeeccccCCeEEEEEecCCcEEEEe
Confidence 34555 444 4558888888888885 43222112211 12355555543 5555532 223233333
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC-------CCCCCCccEEEcCCCcEEEE
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG-------AKPQIPNSVTVDSDGMVYWS 208 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~-------~~~~~pn~v~vd~~G~lyvt 208 (337)
..++.+.+.. ..+|..+..+....+|+.|+++ +.+-+..+..+... ......-.+.+...|+.++.
T Consensus 137 s~~~h~~Lp~---d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii 213 (405)
T KOG1273|consen 137 SDPKHSVLPK---DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII 213 (405)
T ss_pred cCCceeeccC---CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE
Confidence 3344444443 2345444556666777777776 22444444322110 01133445666666665555
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCC-------CCeeEEEe------ccccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPK-------TKKNKVLI------ANLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~-------~~~~~~~~------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
+.+.+ .|..|+.. +++++... ..+ .=+.++++.||.++..+.+..+.++...
T Consensus 214 NtsDR--------------vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~-~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 214 NTSDR--------------VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL-QWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred ecCCc--------------eEEEEehhhhcccCccCCcChhHHHHHHHhhh-hhhheeecCCccEEEeccccceeEEEEe
Confidence 54422 11122211 12221110 011 1257889999976666666677777766
Q ss_pred ee
Q psy4771 276 LK 277 (337)
Q Consensus 276 ~~ 277 (337)
-.
T Consensus 279 ~~ 280 (405)
T KOG1273|consen 279 KS 280 (405)
T ss_pred cC
Confidence 43
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=80.21 E-value=44 Score=30.00 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=29.6
Q ss_pred ecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
...+|.|-+||..+|+..+-. ..-..-|.|++++|. +.+++.+..
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~D 211 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKD 211 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccC
Confidence 345689999999887543222 123456889999998 466666544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=80.08 E-value=15 Score=38.16 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=19.0
Q ss_pred ceEEECCCCcEEEEECCCcEEEEEcCC
Q psy4771 115 LGIKFDKNGALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~~~gv~~vd~~~ 141 (337)
.+++.+.+|+|.|+.....|+.+|.-+
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~~g 607 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDRLG 607 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeecccc
Confidence 467888888888886544477777544
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=65 Score=31.86 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=35.3
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee---eEEEccCCCEEEEEeCC-----CCEEE
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN---GVELSADESFVIVAETM-----SSRVH 272 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~---gia~~~dg~~lyva~~~-----~~~I~ 272 (337)
-++.||+....... +. ......+++||+.+++...+. .+..|. +++.- ++ .|||.-.. .+.|.
T Consensus 436 ~~~~iyv~GG~~~~-~~-----~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 436 HDGKIYVIGGISYI-DN-----IKVYNIVESYNPVTNKWTELS-SLNFPRINASLCIF-NN-KIYVVGGDKYEYYINEIE 506 (534)
T ss_pred ECCEEEEECCccCC-CC-----CcccceEEEecCCCCceeeCC-CCCcccccceEEEE-CC-EEEEEcCCcCCcccceeE
Confidence 35688887643210 00 001124999999988876543 222221 22222 44 58776533 24667
Q ss_pred EEEee
Q psy4771 273 RYYLK 277 (337)
Q Consensus 273 ~~~~~ 277 (337)
+|+++
T Consensus 507 ~yd~~ 511 (534)
T PHA03098 507 VYDDK 511 (534)
T ss_pred EEeCC
Confidence 77654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 337 | ||||
| 2fp8_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 4e-22 | ||
| 2v91_A | 302 | Structure Of Strictosidine Synthase In Complex With | 4e-22 | ||
| 2fpb_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 2e-20 | ||
| 2dso_A | 333 | Crystal Structure Of D138n Mutant Of Drp35, A 35kda | 9e-06 | ||
| 2dg1_A | 333 | Crystal Structure Of Drp35, A 35kda Drug Responsive | 2e-05 | ||
| 2dg0_A | 333 | Crystal Structure Of Drp35, A 35kda Drug Responsive | 5e-05 |
| >pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
| >pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302 | Back alignment and structure |
|
| >pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
| >pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus Length = 333 | Back alignment and structure |
|
| >pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus, Complexed With Ca2+ Length = 333 | Back alignment and structure |
|
| >pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus Length = 333 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 6e-55
Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 53/286 (18%)
Query: 45 LALNEKLNNAEKLFENEIHGPEAVVKHK--GDLYMGVDGGHILKLSGGKLVPVV------ 96
LAL+ + E L E + P + Y V G ++K G V
Sbjct: 2 LALSSPIL-KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP 60
Query: 97 ----KLGKDCYGFKYEQQCGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMD 151
++ + CGR I ++ +N L++ D Y+ L V G QL
Sbjct: 61 YWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA--- 117
Query: 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS 211
T +DG + +VTVD G+VY++D S
Sbjct: 118 TSVDGVPFKWLYAVTVD-------------------------------QRTGIVYFTDVS 146
Query: 212 TKYK---SGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS 268
T Y + +GRLI+Y+P TK+ +L+ LH G E+SAD SFV+VAE +S
Sbjct: 147 TLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS 206
Query: 269 SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCPV 314
++ +Y+L+GPK+G +EV + +P P N+KR++ G+F VS +
Sbjct: 207 HQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 250
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 3e-19
Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 5/149 (3%)
Query: 186 IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT-SGSGRLIQYNPKTKKNKVLIA 244
I N + Y ++ L G +V+
Sbjct: 159 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE 218
Query: 245 NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-K 303
FANG+ +S D +V +AE ++ ++H Y + L DN+ D
Sbjct: 219 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVT 277
Query: 304 GNFLVSLVCPVEQPSEQAGNIRDPAGAQA 332
G+ V C + +P G++
Sbjct: 278 GDLWVG--CHPNGMRIFFYDAENPPGSEV 304
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 7e-17
Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 46/210 (21%)
Query: 111 CGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
G P G + D++ L VAD GL V E
Sbjct: 70 GGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIA---------------------- 107
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE-GLTSGSGR 228
+ +G + Q N D +G ++ + + + + + G
Sbjct: 108 -------------KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154
Query: 229 LIQYNPKTKKNKVLIANLHFANGVELSADES----FVIVAETMSSRVHRYYLKGPKQ-GK 283
+ + + + F NG+ + +IVAET + ++ Y +KGP +
Sbjct: 155 IYCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213
Query: 284 SEVFID---GLPGLPDNVKRDSKGNFLVSL 310
+V+ G D + D N LV+
Sbjct: 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 4e-14
Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 119 FDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ----- 172
FD+ G L + D + G ++K+N T + + P ++ + DG+
Sbjct: 52 FDRQGQLFLLDVFEGNIFKINPETKEI-------KRPFVSHKANPAAIKIHKDGRLFVCY 104
Query: 173 ---TGQTEQLISMDTE-------IDGAKPQI-PNSVTVDSDGMVYWSDSSTKYKSGLFEG 221
T + + I+ + + DS G Y++D
Sbjct: 105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR--------GY 156
Query: 222 LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK---- 277
T+ G + +P + +I N+ ANG+ LS DE + V ET ++R+HR L+
Sbjct: 157 STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216
Query: 278 -GPKQGKSEVFIDGLPGLPDNVKRDSKGN 305
G + + PD+ DS N
Sbjct: 217 TIQPFGATIPYYFTGHEGPDSCCIDSDDN 245
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-13
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 36/196 (18%)
Query: 112 GRPLGIKFDKNGALHVAD-AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
G +K G L L + G+ E + +G K PN V + D
Sbjct: 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA---DSFEGKKLNSPNDVCLAPD 125
Query: 171 GQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230
G ++ +D +G ++ V+
Sbjct: 126 GSLWFSDPTYGIDKPEEGYGGEMELPG-----RWVFRLAPDGTLS--------------- 165
Query: 231 QYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ-GKSEVFID 289
I + NG+ + ++V++T + HRY L + V
Sbjct: 166 ----------APIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFT 214
Query: 290 GLPGLPDNVKRDSKGN 305
PG D ++ D+ G
Sbjct: 215 VEPGKTDGLRVDAGGL 230
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 5e-11
Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 22/168 (13%)
Query: 159 PQIPNSVTVDSDGQ--TGQTEQLISMDTEIDGAKPQI-----------PNSVTVDSDGMV 205
N VD+ + + + ++ DG + PN + V DG +
Sbjct: 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAI 144
Query: 206 YWSDSSTKYKS---GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVI 262
+++D + G + + P +A+L NG+ S DE +
Sbjct: 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMADLDHPNGLAFSPDEQTLY 203
Query: 263 VAETMSSRVHRYYL-----KGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305
V++T + + F GLPD D G
Sbjct: 204 VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-10
Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 31/210 (14%)
Query: 116 GIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-- 172
+ +G + V + G + + G + +++ + + + S+G
Sbjct: 36 NLASAPDGTIFVTNHEVGEIVSIT-PDGNQQIHATVEGK--------VSGLAFTSNGDLV 86
Query: 173 ----TGQTEQLISMDTE-------IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221
+ ++S+ + N +T SD +DS
Sbjct: 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGA--IWLID 144
Query: 222 LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP-K 280
+ SG + +P + F L +F+ V+ T + R + K
Sbjct: 145 VVQPSGSIWLEHPML---ARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDK 201
Query: 281 QGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310
G+ E+F++ D+ D +GN +
Sbjct: 202 PGEPEIFVEQTN--IDDFAFDVEGNLYGAT 229
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 7e-04
Identities = 10/117 (8%), Positives = 34/117 (29%), Gaps = 18/117 (15%)
Query: 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVE 253
++ DG ++ ++ G ++ P + ++ +G+
Sbjct: 34 LENLASAPDGTIFVTN--------------HEVGEIVSITPDGNQ-QIHATVEGKVSGLA 78
Query: 254 LSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG-LPDNVKRDSKGNFLVS 309
+++ + + + L G E + + + S +L +
Sbjct: 79 FTSNGDL-VATGWNADSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTA 133
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 37/210 (17%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
+ + + G + + + K++ G TE + G P +T +
Sbjct: 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTE--YPLPQPDSG-----PYGITEGLN 114
Query: 171 G------QTGQTEQLISMDTEID----GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220
G G ++ D I K P +T+ SD +++++
Sbjct: 115 GDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTE----------- 163
Query: 221 GLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279
+ + + + K + L N G+ D + + E M +++ R
Sbjct: 164 ---NQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRI---TT 216
Query: 280 KQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
SE I P + +
Sbjct: 217 TGEISEYDIPTPNARPHAITAGKNSEIWFT 246
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 7e-10
Identities = 21/212 (9%), Positives = 51/212 (24%), Gaps = 37/212 (17%)
Query: 110 QCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 168
P GI ++G + + ++ + E + + V
Sbjct: 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEV-------PTPDAKVMCLIVS 70
Query: 169 SDG------QTGQTEQLISMDTEIDGAKPQI----PNSVTVDSDGMVYWSDSSTKYKSGL 218
S G +S P +T +G ++++
Sbjct: 71 SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQ--------- 121
Query: 219 FEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277
R+ + + L + + L +D + + E ++ + R
Sbjct: 122 -----LNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRI--- 172
Query: 278 GPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
E + P + + G
Sbjct: 173 TNTGKLEEYPLPTNAAAPVGITSGNDGALWFV 204
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 18/112 (16%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
P+GI +GAL + + ++ T +E + T P+++T +
Sbjct: 188 AAPVGITSGNDGALWFVEIMGNKIGRITTTGEISE--YDIPTPNAR-----PHAITAGKN 240
Query: 171 G------QTGQTEQLISMDTEIDGAKPQ----IPNSVTVDSDGMVYWSDSST 212
I+ D I + Q P+ +T DG V+++
Sbjct: 241 SEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALKCK 292
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 22/210 (10%), Positives = 64/210 (30%), Gaps = 37/210 (17%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
+ + + +G + + + ++ E ++ P +T +
Sbjct: 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKE--YTLPNPDSA-----PYGITEGPN 109
Query: 171 G------QTGQTEQLISMDTEID----GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220
G G I+ D +I K P+ +T+ SD +++++
Sbjct: 110 GDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTE----------- 158
Query: 221 GLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279
+ + + + + + G+ D++ + E + +++ R G
Sbjct: 159 ---NQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSG- 213
Query: 280 KQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
+E I P + + + +
Sbjct: 214 --EITEFKIPTPNARPHAITAGAGIDLWFT 241
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 37/212 (17%)
Query: 110 QCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 168
Q P GI G + + + +N+ TE + T +T+
Sbjct: 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITE--YPLPTPDAK-----VMCLTIS 65
Query: 169 SDG------QTGQTEQLISMDTEID----GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218
SDG I+ I P +T +G +++++
Sbjct: 66 SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTE--------- 116
Query: 219 FEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277
R+ + K + L + + + L +D + + E ++ + R
Sbjct: 117 -----MNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITES 170
Query: 278 GPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
G +E I P + + +
Sbjct: 171 G---DITEFKIPTPASGPVGITKGNDDALWFV 199
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 34/178 (19%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
P I + AL + + ++ + TE + T G P +T +D
Sbjct: 141 SYPSFITLGSDNALWFTENQNNAIGRITESGDITE--FKIPTPASG-----PVGITKGND 193
Query: 171 G------QTGQTEQLISMDTEIDGAKPQIPNS----VTVDSDGMVYWSDSSTKYKSGLFE 220
G I+ EI K PN+ +T + +++++
Sbjct: 194 DALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTE----------- 242
Query: 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278
G+ ++ + + I A + D + A ++ + L
Sbjct: 243 ---WGANKIGRLTSNNIIEEYPIQIK-SAEPHGICFDGETIWFAME-CDKIGKLTLIK 295
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 54/268 (20%)
Query: 59 ENEIHGPEAV-VKHKGDLYMGVDGGH--ILKLS-GGKLVPVVKLGKDCYGFKYEQQCGRP 114
+ P V V G++Y+ +G + ++KL+ G V+ +P
Sbjct: 20 IDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN----------GLYQP 69
Query: 115 LGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-- 172
G+ D G ++V D + + + T + P + VD+ G
Sbjct: 70 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-------TVLPFDGLNYPEGLAVDTQGAVY 122
Query: 173 ---TGQTE-QLISMD----TEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224
G ++ T + P+ V VD+ G VY +D +
Sbjct: 123 VADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTD--------------T 168
Query: 225 GSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283
+ R+++ ++ VL ++ G+ + + V V E +++V +
Sbjct: 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGS----- 222
Query: 284 SEVFIDGLPGL--PDNVKRDSKGNFLVS 309
+ + GL P V DS V+
Sbjct: 223 TTSTVLPFTGLNTPLAVAVDSDRTVYVA 250
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Length = 781 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 24/204 (11%), Positives = 58/204 (28%), Gaps = 38/204 (18%)
Query: 52 NNAEKLFENEIHGPEAVVKHKGDLYMGVDGGHILKL--SGGKLVPVVKLGKDCYGFKYEQ 109
+ + L N++ + V+ L++ I L + GK K E
Sbjct: 107 EDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNK--STVPALPSE- 163
Query: 110 QCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
+ ++G L++ GL +++ + + + + D+
Sbjct: 164 ---QTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT 220
Query: 170 DG---------------QTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY 214
+G T + I GA S+ D ++ +
Sbjct: 221 NGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIA------ 274
Query: 215 KSGLFEGLTSGSGRLIQYNPKTKK 238
T +G ++ + + +
Sbjct: 275 --------TELNG-IMILDLQQNQ 289
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.94 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.92 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.91 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.89 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.88 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.87 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.84 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.83 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.83 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.83 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.83 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.82 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.81 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.81 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.81 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.81 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.8 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.8 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.8 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.8 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.78 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.78 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.78 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.77 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.77 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.76 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.75 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.75 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.74 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.74 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.73 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.71 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.71 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.71 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.71 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.7 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.7 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.69 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.68 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.68 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.67 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.67 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.66 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.66 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.66 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.65 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.64 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.62 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.59 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.58 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.58 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.57 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.53 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.53 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.52 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.52 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.52 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.5 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.48 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.47 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.47 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.46 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.43 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.39 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.39 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.37 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.36 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.36 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.36 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.36 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.35 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.34 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.33 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.31 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.3 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.29 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.28 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.27 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.27 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.25 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.25 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.24 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.23 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.22 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.21 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.21 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.2 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.19 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.18 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.18 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.17 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.16 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.15 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.14 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.13 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.12 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.08 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.08 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.07 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.07 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.07 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.07 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.07 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.06 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.04 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.04 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.02 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.95 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.95 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.94 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.94 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.94 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.93 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.87 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.85 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.84 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.82 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.8 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.72 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.68 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.68 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.59 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.59 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.56 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.51 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.5 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.46 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.45 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.44 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.44 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.38 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.38 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.37 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.37 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.36 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.34 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.31 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.3 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.24 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.23 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.23 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.21 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.2 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.2 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.19 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.18 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.15 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.15 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.14 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.13 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.11 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.11 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.11 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.11 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.1 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.05 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.04 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.03 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.99 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.99 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.98 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.95 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.94 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.93 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.93 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.9 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.88 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.87 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.85 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.84 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.83 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.83 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.83 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.82 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.8 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.79 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.79 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.78 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.78 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.78 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.78 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.74 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.69 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.67 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.67 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.66 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.66 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.66 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.65 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.65 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.65 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.65 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.65 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.63 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.62 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.62 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.61 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.59 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.59 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.59 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.58 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.58 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.58 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.58 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.55 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.53 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.53 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.52 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.51 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.5 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.49 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.49 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.48 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.47 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.47 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.46 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.46 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.45 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.45 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.44 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.44 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.44 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.42 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.38 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.38 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.37 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.36 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.36 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.31 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.3 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.26 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.26 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.25 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.24 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.24 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.23 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.22 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.22 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.21 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.16 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.15 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.11 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.11 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.06 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.04 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.98 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.98 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 96.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.96 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.89 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.85 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.84 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.78 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.75 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.62 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.59 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.58 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.52 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.52 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.47 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.42 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.42 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.29 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.22 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.21 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.19 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.1 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.99 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 95.99 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 95.91 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 95.85 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 95.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 95.82 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.71 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.68 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.66 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.58 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 95.57 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.55 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.52 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 95.42 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.29 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 95.15 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 95.15 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.02 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 94.93 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 94.87 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.47 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.46 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 94.23 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 94.11 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 93.72 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 93.59 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 93.11 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 92.49 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 91.84 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 91.71 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 91.55 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 90.98 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 90.07 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 87.57 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 85.49 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 85.11 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 82.88 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 82.47 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 81.56 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 80.43 |
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=211.28 Aligned_cols=222 Identities=34% Similarity=0.601 Sum_probs=166.1
Q ss_pred Ccee-ccCcccCccEEEe-eCCe-EEEEecCcEEEEEeCC--ceeEEEecCc-----cccCc---cccCccCCcceEEEC
Q psy4771 54 AEKL-FENEIHGPEAVVK-HKGD-LYMGVDGGHILKLSGG--KLVPVVKLGK-----DCYGF---KYEQQCGRPLGIKFD 120 (337)
Q Consensus 54 ~~~~-~~g~~~~P~~i~~-~~g~-ly~d~~~g~I~~~~~~--~~~~~~~~g~-----~~~~~---~~~~~~~~P~Gl~~d 120 (337)
.+++ ..|.+..|+++++ .++. +|++..+++|++++.. ....+..... .|.+. .....+.+|.||+++
T Consensus 9 ~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~ 88 (322)
T 2fp8_A 9 LKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN 88 (322)
T ss_dssp -CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE
T ss_pred cceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEc
Confidence 4444 3566789999999 5665 8899999999999873 3433322110 11110 011235689999999
Q ss_pred C-CCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEE
Q psy4771 121 K-NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTV 199 (337)
Q Consensus 121 ~-~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~v 199 (337)
+ +|+|||+|..++++++|+++++++.+... ..+. ++..||++++
T Consensus 89 ~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~---~~~~--------------------------------~~~~p~~i~~ 133 (322)
T 2fp8_A 89 LQNNQLYIVDCYYHLSVVGSEGGHATQLATS---VDGV--------------------------------PFKWLYAVTV 133 (322)
T ss_dssp TTTTEEEEEETTTEEEEECTTCEECEEEESE---ETTE--------------------------------ECSCEEEEEE
T ss_pred CCCCcEEEEECCCCEEEEeCCCCEEEEeccc---CCCC--------------------------------cccccceEEE
Confidence 7 89999999888899999987777666541 1221 4678999999
Q ss_pred cC-CCcEEEEcCCCCc--cCceeee-eecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 200 DS-DGMVYWSDSSTKY--KSGLFEG-LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 200 d~-~G~lyvtd~~~~~--~~~~~~~-~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
|+ +|++||+|....+ .+....+ .....|+|+++|+++++.+.+...+..|+||++++||++|||+++..++|++|+
T Consensus 134 d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~ 213 (322)
T 2fp8_A 134 DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYW 213 (322)
T ss_dssp CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEE
Confidence 99 9999999986432 1110011 123458999999998988877788899999999999999999999999999999
Q ss_pred eeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 276 LKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 276 ~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
+++...++.+.+.+ +++ |+||++|++|++||+...
T Consensus 214 ~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 214 LEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp SSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence 98766667777775 678 999999999999999976
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=196.37 Aligned_cols=209 Identities=19% Similarity=0.235 Sum_probs=152.1
Q ss_pred ccCcccCccEEEe-eCCeEEEEe-------------cCcEEEEEeCC----ceeEEEecCccccCccccCccCCcceEEE
Q psy4771 58 FENEIHGPEAVVK-HKGDLYMGV-------------DGGHILKLSGG----KLVPVVKLGKDCYGFKYEQQCGRPLGIKF 119 (337)
Q Consensus 58 ~~g~~~~P~~i~~-~~g~ly~d~-------------~~g~I~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~ 119 (337)
.++...+||+|++ .+|.+|+++ .+|+|++++.. +.+.+...+.. + .....+|+||.+
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~----~-~~~~f~PhGi~~ 119 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT----L-DISSFNPHGIST 119 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS----C-CGGGCCEEEEEE
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC----C-CcCceeeeeeEE
Confidence 3565679999999 789999665 68999999974 22332211210 0 122358999999
Q ss_pred CC--CC--cEEEEECCCc-----EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 120 DK--NG--ALHVADAYFG-----LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 120 d~--~G--~lyVad~~~g-----v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
.. +| +|||++...+ +++++++++....+.. ..+ .+
T Consensus 120 ~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~----~~g--------------------------------~~ 163 (355)
T 3sre_A 120 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT----IRH--------------------------------KL 163 (355)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE----ECC--------------------------------TT
T ss_pred EECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec----ccc--------------------------------CC
Confidence 55 45 7999985532 8888887665544432 333 36
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCcee----eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLF----EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~----~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
++.|||++++++|++|+++..... +..+ .....+.|+||++|+. +++++.+++.+|||||++||+++|||+|+
T Consensus 164 ~~~pND~~v~~~G~fyvt~~~~ft-d~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 164 LPSVNDIVAVGPEHFYATNDHYFI-DPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCS-SHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred CCCCceEEEeCCCCEEecCCcEeC-CcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeC
Confidence 899999999999999999874311 1000 0112457899999984 67788899999999999999999999999
Q ss_pred CCCEEEEEEeeC-CCCCceeeeecCCCCCCCceeECC-CCCEEEEecC
Q psy4771 267 MSSRVHRYYLKG-PKQGKSEVFIDGLPGLPDNVKRDS-KGNFLVSLVC 312 (337)
Q Consensus 267 ~~~~I~~~~~~g-~~~~~~~~~~~~~~g~Pdgi~~d~-dG~l~va~~~ 312 (337)
..++|++|++++ +.++..++| . +++.|||+++|+ +|++|||...
T Consensus 241 ~~~~I~~~~~~~~g~l~~~~~~-~-~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 241 LAHKIHVYEKHANWTLTPLRVL-S-FDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp GGTEEEEEEECTTSCEEEEEEE-E-CSSEEEEEEECTTTCCEEEEEES
T ss_pred CCCeEEEEEECCCCcEecCEEE-e-CCCCCceEEEeCCCCcEEEEecC
Confidence 999999999974 345556666 3 678999999999 5999998753
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=183.39 Aligned_cols=210 Identities=17% Similarity=0.235 Sum_probs=154.9
Q ss_pred CceeccCcccCccEEEe-e-CC-eEEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEE
Q psy4771 54 AEKLFENEIHGPEAVVK-H-KG-DLYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD 129 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~-~g-~ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad 129 (337)
.+++.++.. -+|+.++ . ++ .+|++..+++|++++. ++...+. ...+.|+|+++|++|+||+++
T Consensus 37 ~~~l~~~~~-~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~------------~~~~~~~gl~~d~dG~l~v~~ 103 (305)
T 3dr2_A 37 LLTLYDQAT-WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLL------------DATAFTNGNAVDAQQRLVHCE 103 (305)
T ss_dssp CEEEECCCS-SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEE------------ESCSCEEEEEECTTSCEEEEE
T ss_pred eEEEecCCc-CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEe------------CCCCccceeeECCCCCEEEEE
Confidence 566666644 4677776 3 34 3559999999999987 3333332 123569999999999999998
Q ss_pred CC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEE
Q psy4771 130 AY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWS 208 (337)
Q Consensus 130 ~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvt 208 (337)
.. .+|.+++++ |+.+.+... ..+. .++.||+++++++|++|||
T Consensus 104 ~~~~~v~~~~~~-g~~~~~~~~---~~~~--------------------------------~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 104 HGRRAITRSDAD-GQAHLLVGR---YAGK--------------------------------RLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp TTTTEEEEECTT-SCEEEEECE---ETTE--------------------------------ECSCCCCEEECTTSCEEEE
T ss_pred CCCCEEEEECCC-CCEEEEEec---cCCC--------------------------------ccCCCCCEEECCCCCEEEe
Confidence 65 469999987 667666541 2221 4678999999999999999
Q ss_pred cCCCCcc---CceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-----CEEEEEEeeCCC
Q psy4771 209 DSSTKYK---SGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS-----SRVHRYYLKGPK 280 (337)
Q Consensus 209 d~~~~~~---~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~-----~~I~~~~~~g~~ 280 (337)
|+..... ++.........+.|+++|+++++++.+. ++..|+|+++++|++.|||+++.. ++|++|++++..
T Consensus 148 d~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 148 DPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp CCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred CcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 8743210 0000011123568999999888887777 888999999999999999999874 899999998654
Q ss_pred CCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 281 QGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 281 ~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+...+++.+...+.|+||++|++|++|++...+
T Consensus 227 l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~g 259 (305)
T 3dr2_A 227 LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTG 259 (305)
T ss_dssp EEEEEEEECCSSSCCCSEEECTTSCEEECCSSE
T ss_pred ccCCeEEEECCCCCCCeEEECCCCCEEEecCCc
Confidence 555567766556789999999999999998544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=177.42 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=145.4
Q ss_pred ccEEEe--eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCC
Q psy4771 65 PEAVVK--HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 65 P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~ 141 (337)
+|+.++ +++.|| +|..+++|++++..+.... .+ .....|.+++++++|+|||+. ..+|+++|+++
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~----------~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV----------TMDAPVSSVALRQSGGYVATI-GTKFCALNWKE 82 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE----------ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTT
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE----------eCCCceEEEEECCCCCEEEEE-CCeEEEEECCC
Confidence 444444 256666 9999999999997432111 11 122568999999999999997 57899999998
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
++++.+... ..+ .+...+|++++|++|++|+++...... ...
T Consensus 83 g~~~~~~~~---~~~--------------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~---~~~ 124 (297)
T 3g4e_A 83 QSAVVLATV---DND--------------------------------KKNNRFNDGKVDPAGRYFAGTMAEETA---PAV 124 (297)
T ss_dssp TEEEEEEEC---CTT--------------------------------CSSEEEEEEEECTTSCEEEEEEECCSB---TTB
T ss_pred CcEEEEEec---CCC--------------------------------CCCCCCCCEEECCCCCEEEecCCcccc---ccc
Confidence 988877642 111 135678999999999999988643210 000
Q ss_pred eecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee--CCCCCceeeeecC--CCCCCCc
Q psy4771 222 LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK--GPKQGKSEVFIDG--LPGLPDN 297 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~--g~~~~~~~~~~~~--~~g~Pdg 297 (337)
.....+.||+++++ ++...+...+..|||+++++|+++||++++..++|++|+++ ++...+.+++.+. .++.|+|
T Consensus 125 ~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 125 LERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp CCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred ccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 12346799999986 56666777888999999999999999999999999999985 2333344555541 2367999
Q ss_pred eeECCCCCEEEEecCC
Q psy4771 298 VKRDSKGNFLVSLVCP 313 (337)
Q Consensus 298 i~~d~dG~l~va~~~~ 313 (337)
|++|++|++||+.+..
T Consensus 204 ~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 204 MCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEBTTSCEEEEEETT
T ss_pred eEECCCCCEEEEEcCC
Confidence 9999999999998755
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-20 Score=168.55 Aligned_cols=216 Identities=19% Similarity=0.261 Sum_probs=155.1
Q ss_pred CcCcchhccccccCceeccCcccCccEEEe-eCCe--EEEEecCcEEEEEeCCc-eeEEEecCccccCccccCccCCcce
Q psy4771 41 LEGKLALNEKLNNAEKLFENEIHGPEAVVK-HKGD--LYMGVDGGHILKLSGGK-LVPVVKLGKDCYGFKYEQQCGRPLG 116 (337)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~g~~~~P~~i~~-~~g~--ly~d~~~g~I~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~P~G 116 (337)
+...+..+.. .+.+.++ ...||++++ .++. +|++..+++|++++..+ ...+. .....|.+
T Consensus 10 ~~~~~~~~~~---~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~ 73 (296)
T 3e5z_A 10 FLDLFPAGAE---ARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEM------------HPSHHQNG 73 (296)
T ss_dssp GGGGSCTTCC---CEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEE------------SSCSSEEE
T ss_pred HHhhcCCCCc---EEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEE------------CCCCCcce
Confidence 3444444444 3445444 456899998 4443 55999999999999743 22221 22356999
Q ss_pred EEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCc
Q psy4771 117 IKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPN 195 (337)
Q Consensus 117 l~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn 195 (337)
++++++|+|||++.. .+|.++|+++|+.+.+... ..+ .....|+
T Consensus 74 l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~---~~~--------------------------------~~~~~~~ 118 (296)
T 3e5z_A 74 HCLNKQGHLIACSHGLRRLERQREPGGEWESIADS---FEG--------------------------------KKLNSPN 118 (296)
T ss_dssp EEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE---ETT--------------------------------EECCCCC
T ss_pred eeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec---cCC--------------------------------CCCCCCC
Confidence 999999999999875 5699999988887766531 111 1356799
Q ss_pred cEEEcCCCcEEEEcCCCCc---cCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 196 SVTVDSDGMVYWSDSSTKY---KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 196 ~v~vd~~G~lyvtd~~~~~---~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
++++|++|++|+||+.... ..+.........+.|++++++ ++...+...+..|+|+++++||+.+ ++++..++|+
T Consensus 119 ~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~ 196 (296)
T 3e5z_A 119 DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATH 196 (296)
T ss_dssp CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEE
T ss_pred CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEE
Confidence 9999999999999874210 000000011235689999998 7777777888999999999999877 9999999999
Q ss_pred EEEeeC-CCC-CceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 273 RYYLKG-PKQ-GKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 273 ~~~~~g-~~~-~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
+|++++ +.. ....++ ....+.|++|++|++|++||+.
T Consensus 197 ~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 197 RYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp EEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE
T ss_pred EEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc
Confidence 999962 333 334555 5455679999999999999999
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-20 Score=167.40 Aligned_cols=183 Identities=20% Similarity=0.240 Sum_probs=140.2
Q ss_pred cCccEEEe-eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-Cc--EEE
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FG--LYK 136 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~g--v~~ 136 (337)
..|+++++ .++.|| ++..+++|+++++ ++...+.. ..+.|.||+++++|+|||++.. ++ |++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~------------~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT------------VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE------------CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe------------CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 47999999 677788 8889999999997 44333221 2256999999999999999954 23 889
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccC
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKS 216 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~ 216 (337)
+|..+++++.+... . ...+++++++.+++++|++|..
T Consensus 100 ~d~~~g~~~~~~~~----~----------------------------------~~~~~~g~~~~~~~~~~v~d~~----- 136 (306)
T 2p4o_A 100 LVKSDGTVETLLTL----P----------------------------------DAIFLNGITPLSDTQYLTADSY----- 136 (306)
T ss_dssp EECTTSCEEEEEEC----T----------------------------------TCSCEEEEEESSSSEEEEEETT-----
T ss_pred EcCCCCeEEEEEeC----C----------------------------------CccccCcccccCCCcEEEEECC-----
Confidence 99888888776541 1 2345788988888889999864
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEE-----------eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC-CCCCce
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVL-----------IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG-PKQGKS 284 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~-----------~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g-~~~~~~ 284 (337)
.|+||++|+.+++.++. ...+..|||| ++|+++|||+++.+++|++|++++ +..+..
T Consensus 137 ---------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~ 205 (306)
T 2p4o_A 137 ---------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 205 (306)
T ss_dssp ---------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred ---------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence 35899999876532221 1346789998 888999999999999999999985 345556
Q ss_pred eeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 285 EVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 285 ~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+++.+. ..|+||++|++|++||+....
T Consensus 206 ~~~~~~--~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 206 EIFVEQ--TNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp EEEEES--CCCSSEEEBTTCCEEEECBTT
T ss_pred EEEecc--CCCCCeEECCCCCEEEEeCCC
Confidence 666652 469999999999999999765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=168.33 Aligned_cols=185 Identities=15% Similarity=0.203 Sum_probs=140.6
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC-cE
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF-GL 134 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-gv 134 (337)
+..|.++++ .++.|| +|..+++|+|++... .+.+.. .....|.||++|+ .|+||++|... .|
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-----------~~~~~p~glavd~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-----------TGLESPGGLAVDWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-----------CCCCCccEEEEecCCCeEEEEcCCCCeE
Confidence 457999998 467787 999999999998732 222221 2346799999997 56999999864 49
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~ 213 (337)
.++++++...+.+.. ..+..|+++++|+ +|.||++|...
T Consensus 141 ~~~~~dG~~~~~l~~---------------------------------------~~l~~P~~iavdp~~g~ly~td~~~- 180 (349)
T 3v64_C 141 EVANLDGAHRKVLLW---------------------------------------QSLEKPRAIALHPMEGTIYWTDWGN- 180 (349)
T ss_dssp EEEETTSCSCEEEEC---------------------------------------TTCSCEEEEEEETTTTEEEEEECSS-
T ss_pred EEEcCCCCceEEEEe---------------------------------------CCCCCcceEEEecCcCeEEEeccCC-
Confidence 999988665555442 1366799999997 67899999863
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP 292 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~ 292 (337)
.++|+++++++...+.+. .++..|+||++++++++||++|+..++|.+++++|. ..+.+.....
T Consensus 181 ------------~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~---~~~~~~~~~~ 245 (349)
T 3v64_C 181 ------------TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGL 245 (349)
T ss_dssp ------------SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSC
T ss_pred ------------CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---ceEEEEeCCC
Confidence 248999998865554443 468899999999988899999999999999999874 2344443223
Q ss_pred CCCCceeECCCCCEEEEecCC
Q psy4771 293 GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+.|+||+++ +|++|++.+..
T Consensus 246 ~~P~giav~-~~~ly~td~~~ 265 (349)
T 3v64_C 246 PHPFAITVF-EDSLYWTDWHT 265 (349)
T ss_dssp SSEEEEEEE-TTEEEEEETTT
T ss_pred CCceEEEEE-CCEEEEecCCC
Confidence 569999995 67899998766
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-19 Score=157.88 Aligned_cols=185 Identities=17% Similarity=0.220 Sum_probs=137.7
Q ss_pred ccCccEEEee--CCeEE-EEecCcEEEEEeCC-ce-eEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCC-cE
Q psy4771 62 IHGPEAVVKH--KGDLY-MGVDGGHILKLSGG-KL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYF-GL 134 (337)
Q Consensus 62 ~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~~-~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~-gv 134 (337)
...|++++++ ++.|| ++..+++|++++.. +. ..+. ......|.||++|++ |+|||+|... .|
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-----------RQDLGSPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----------CTTCCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-----------ECCCCCccEEEEEecCCeEEEEECCCCEE
Confidence 3578999993 67888 99999999999873 22 2221 123467999999986 6999999765 49
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~ 213 (337)
.+++.++...+.+... .+..|+++++|+ +|+||+++...
T Consensus 104 ~~~~~~g~~~~~~~~~---------------------------------------~~~~P~~i~vd~~~g~lyv~~~~~- 143 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDT---------------------------------------GLVNPRGIVTDPVRGNLYWTDWNR- 143 (267)
T ss_dssp EEEETTSCSCEEEECS---------------------------------------SCSSEEEEEEETTTTEEEEEECCS-
T ss_pred EEEEcCCCCEEEEEEC---------------------------------------CCCCccEEEEeeCCCEEEEEECCC-
Confidence 9999876554444320 246799999999 57899999752
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP 292 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~ 292 (337)
..++|+++++++...+.+. .++..|+|+++++++++|||++...++|.++++++. ....+.+.+
T Consensus 144 -----------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~- 208 (267)
T 1npe_A 144 -----------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGL- 208 (267)
T ss_dssp -----------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECC-
T ss_pred -----------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEecCC-
Confidence 1348888887755444443 567899999999998899999999999999998753 233444433
Q ss_pred CCCCceeECCCCCEEEEecCC
Q psy4771 293 GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..|+||++| +|++||+....
T Consensus 209 ~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 209 QYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp CSEEEEEEE-TTEEEEEETTT
T ss_pred CCceEEEEe-CCEEEEEECCC
Confidence 469999998 68899999765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-19 Score=160.21 Aligned_cols=186 Identities=12% Similarity=0.202 Sum_probs=139.1
Q ss_pred ccCccEEEee--CCeEE-EEecCcEEEEEeCCc-----eeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC
Q psy4771 62 IHGPEAVVKH--KGDLY-MGVDGGHILKLSGGK-----LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF 132 (337)
Q Consensus 62 ~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~ 132 (337)
+..|++++++ ++.|| +|..+++|++++..+ .... .+ ......|.||++|. .|+||++|...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-~~---------~~~~~~p~glavd~~~~~ly~~d~~~ 98 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VI---------SRDIQAPDGLAVDWIHSNIYWTDSVL 98 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-EE---------CSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE-EE---------eCCCCCcCEEEEeecCCeEEEEECCC
Confidence 5579999983 67787 999999999998732 1111 11 12346799999996 56999999764
Q ss_pred -cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcC
Q psy4771 133 -GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDS 210 (337)
Q Consensus 133 -gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~ 210 (337)
.|.++++++...+.+... .+..|+++++|+ +|+||++|.
T Consensus 99 ~~I~~~~~~g~~~~~~~~~---------------------------------------~~~~P~~iavdp~~g~ly~~d~ 139 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRE---------------------------------------NGSKPRAIVVDPVHGFMYWTDW 139 (316)
T ss_dssp TEEEEEETTSSSEEEEEEC---------------------------------------TTCCEEEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCCCceEEEEEC---------------------------------------CCCCcceEEeCCCCCEEEEEcc
Confidence 499999987666655431 356799999997 678999997
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~ 289 (337)
.. .++|+++++++...+.+. ..+..|+||++++++++||++|+..++|.+++++|. ..+++..
T Consensus 140 ~~-------------~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~---~~~~~~~ 203 (316)
T 1ijq_A 140 GT-------------PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILE 203 (316)
T ss_dssp SS-------------SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEE
T ss_pred CC-------------CCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC---ceEEEee
Confidence 52 248999998755444443 468899999999998899999999999999999864 3445543
Q ss_pred C--CCCCCCceeECCCCCEEEEecCC
Q psy4771 290 G--LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 290 ~--~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
. ....|+||+++. |++|++.+..
T Consensus 204 ~~~~~~~P~giav~~-~~ly~~d~~~ 228 (316)
T 1ijq_A 204 DEKRLAHPFSLAVFE-DKVFWTDIIN 228 (316)
T ss_dssp CTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred cCCccCCcEEEEEEC-CEEEEEECCC
Confidence 2 234699999984 7899998765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=154.55 Aligned_cols=216 Identities=21% Similarity=0.288 Sum_probs=153.7
Q ss_pred CccEEEe-eCCeEEE-E-ecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcC
Q psy4771 64 GPEAVVK-HKGDLYM-G-VDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVT 140 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~-d-~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~ 140 (337)
.|.++++ .+|.+|+ . ..+++|.+++.++..... +. ......|.+|+++++|+|||++...+|+++|++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP--------FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC--------CCSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee--------eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC
Confidence 8999999 6778886 6 677899999874432211 11 123357999999999999999974569999998
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccC------CCCCCCCccEEEcCCCcEEEEcC
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEID------GAKPQIPNSVTVDSDGMVYWSDS 210 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~------~~~~~~pn~v~vd~~G~lyvtd~ 210 (337)
++....+.. .+ ...|.+++++++|+++ ..+.|..++.... ...+..|++++++++|++|+++.
T Consensus 96 ~~~~~~~~~-----~~--~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 96 SNNQTVLPF-----DG--LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp CSCCEECCC-----CS--CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred CceEeeeec-----CC--cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 766554421 11 1248899999999987 2346766642211 12345799999999999999986
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~ 289 (337)
. .++|+++|++++..... ..++..|++|+++++| .|||++...++|.+|+.++... .....
T Consensus 169 ~--------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~---~~~~~ 230 (270)
T 1rwi_B 169 D--------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS---TVLPF 230 (270)
T ss_dssp G--------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC---EECCC
T ss_pred C--------------CCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc---eeecc
Confidence 5 24899999887654332 2345789999999999 6999999999999999765321 11111
Q ss_pred CCCCCCCceeECCCCCEEEEecCC
Q psy4771 290 GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 290 ~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.....|.+|++|++|++|++....
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCC
Confidence 111358999999999999998655
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-19 Score=166.99 Aligned_cols=185 Identities=15% Similarity=0.203 Sum_probs=139.7
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeCC-c-eeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC-cE
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSGG-K-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF-GL 134 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~-~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-gv 134 (337)
+..|+++++ .++.|| +|..+++|+|++.. + .+.+.. .....|.||++|+ .|+||++|... .|
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-----------~~~~~p~glavd~~~g~lY~~d~~~~~I 183 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-----------TGLESPGGLAVDWVHDKLYWTDSGTSRI 183 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-----------SSCSCCCCEEEETTTTEEEEEETTTTEE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-----------CCCCCccEEEEEeCCCeEEEEcCCCCeE
Confidence 457999998 367777 99999999999873 2 222221 2346799999996 56999999864 48
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~ 213 (337)
.++++++...+.+... .+..|++|++|+ +|.||++|...
T Consensus 184 ~~~~~dg~~~~~l~~~---------------------------------------~l~~P~giavdp~~g~ly~td~~~- 223 (386)
T 3v65_B 184 EVANLDGAHRKVLLWQ---------------------------------------SLEKPRAIALHPMEGTIYWTDWGN- 223 (386)
T ss_dssp EECBTTSCSCEEEECS---------------------------------------SCSCEEEEEEETTTTEEEEEECSS-
T ss_pred EEEeCCCCceEEeecC---------------------------------------CCCCCcEEEEEcCCCeEEEeccCC-
Confidence 8888886655555421 367799999997 56799999863
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP 292 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~ 292 (337)
.++|+++++++...+.+. .++..|+||++++++++|||+|+..++|.+++++|. ..+.+.....
T Consensus 224 ------------~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~ 288 (386)
T 3v65_B 224 ------------TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGL 288 (386)
T ss_dssp ------------SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC---SCEEEECSSC
T ss_pred ------------CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC---eeEEEEECCC
Confidence 248999998865554444 568899999999988899999999999999998864 2334443223
Q ss_pred CCCCceeECCCCCEEEEecCC
Q psy4771 293 GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+.|+||+++ +|++|++.+..
T Consensus 289 ~~P~giav~-~~~ly~td~~~ 308 (386)
T 3v65_B 289 PHPFAITVF-EDSLYWTDWHT 308 (386)
T ss_dssp SSEEEEEEE-TTEEEEEETTT
T ss_pred CCceEEEEE-CCEEEEeeCCC
Confidence 569999995 56788888765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-19 Score=161.85 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=138.0
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeCC-ce--eEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC-c
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSGG-KL--VPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF-G 133 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~-~~--~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-g 133 (337)
+..|.++.+ .++.|| +|..+++|+|++.. +. ..+.. .....|.|+++|. .|+||++|... .
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-----------~~l~~p~glavd~~~g~ly~~d~~~~~ 102 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-----------SGLLSPDGLACDWLGEKLYWTDSETNR 102 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-----------ECCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-----------CCCCCccEEEEEcCCCeEEEEECCCCE
Confidence 346777777 367777 99999999999873 21 12211 2346799999996 57999999765 4
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSST 212 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~ 212 (337)
|.++++++...+.+... .+..|+++++|+ +|.||++|+..
T Consensus 103 I~~~~~dG~~~~~l~~~---------------------------------------~~~~P~giavdp~~g~ly~td~~~ 143 (318)
T 3sov_A 103 IEVSNLDGSLRKVLFWQ---------------------------------------ELDQPRAIALDPSSGFMYWTDWGE 143 (318)
T ss_dssp EEEEETTSCSCEEEECS---------------------------------------SCSSEEEEEEEGGGTEEEEEECSS
T ss_pred EEEEECCCCcEEEEEeC---------------------------------------CCCCccEEEEeCCCCEEEEEecCC
Confidence 99999887655555421 366799999997 57899999752
Q ss_pred CccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCC
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGL 291 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~ 291 (337)
.++|+++++++...+.+. .++..||||++++++++||++|+..++|.+++++|. ..+++.+..
T Consensus 144 -------------~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~ 207 (318)
T 3sov_A 144 -------------VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGS 207 (318)
T ss_dssp -------------SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSC
T ss_pred -------------CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCC
Confidence 248999998765544443 568899999999988899999999999999999874 345555533
Q ss_pred CCCCCceeECCCCCEEEEecCC
Q psy4771 292 PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 292 ~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-+.|+||+++.+ ++|++.+..
T Consensus 208 ~~~P~glav~~~-~lywtd~~~ 228 (318)
T 3sov_A 208 LPHPFALTLFED-ILYWTDWST 228 (318)
T ss_dssp CSCEEEEEEETT-EEEEEETTT
T ss_pred CCCceEEEEeCC-EEEEEecCC
Confidence 356999999854 577777654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=153.04 Aligned_cols=224 Identities=15% Similarity=0.186 Sum_probs=154.7
Q ss_pred cCcccCccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEE-CCCCcEEEEEC--CCc
Q psy4771 59 ENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKF-DKNGALHVADA--YFG 133 (337)
Q Consensus 59 ~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~-d~~G~lyVad~--~~g 133 (337)
++.+..|.++++ .++.+| ++..+++|.+|+.... .+..++.... .......|.++++ +++|+|||++. ...
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~---~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGK---RDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSS---STTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccCC---CcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 355678999999 678888 7788999999987321 2222322110 0123467999999 68899999995 356
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeecccc------C-CCCCCCCccEEEcCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEI------D-GAKPQIPNSVTVDSD 202 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~------~-~~~~~~pn~v~vd~~ 202 (337)
|.++|.++..+..+.. .. ...|.+++++++|+++ ..+.|..++... . ...+..|++++++++
T Consensus 102 i~~~d~~g~~~~~~~~----~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFGA----TI---LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp EEEECTTSCEEEEECT----TT---CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS
T ss_pred EEEECCCCcEEEEecC----cc---CCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC
Confidence 9999976554444422 11 1248899999999987 234566665221 1 023567999999999
Q ss_pred CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEeCCCC-EEEEEEeeCC
Q psy4771 203 GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAETMSS-RVHRYYLKGP 279 (337)
Q Consensus 203 G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~~~~~-~I~~~~~~g~ 279 (337)
|++|+++.. +++|+++|+++.....+... +..|.+|+++++| .|||++...+ +|.+|+.++.
T Consensus 175 g~l~v~~~~--------------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~ 239 (286)
T 1q7f_A 175 QEIFISDNR--------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQ 239 (286)
T ss_dssp SEEEEEEGG--------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSC
T ss_pred CCEEEEECC--------------CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCC
Confidence 999999865 24888899865544444322 5789999999999 5999998886 9999986543
Q ss_pred CCCceeeeecCC-CCCCCceeECCCCCEEEEec
Q psy4771 280 KQGKSEVFIDGL-PGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 280 ~~~~~~~~~~~~-~g~Pdgi~~d~dG~l~va~~ 311 (337)
. ...+.... ...|.+++++++|++||+..
T Consensus 240 ~---~~~~~~~~~~~~~~~i~~~~~g~l~vs~~ 269 (286)
T 1q7f_A 240 L---ISALESKVKHAQCFDVALMDDGSVVLASK 269 (286)
T ss_dssp E---EEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred E---EEEEcccCCCCcceeEEECCCCcEEEECC
Confidence 2 22232222 12478999999999999963
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=172.06 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=147.4
Q ss_pred CcccCccEEEe--eCCeEE-EEecCcEEEEEeC-C-ceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCCc
Q psy4771 60 NEIHGPEAVVK--HKGDLY-MGVDGGHILKLSG-G-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYFG 133 (337)
Q Consensus 60 g~~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~g 133 (337)
..+..|.+|++ .++.|| +|..+++|+|++. + ..+.+.. .....|.||++|.. |+||++|...+
T Consensus 34 ~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-----------~g~~~P~GlAvD~~~~~LY~tD~~~~ 102 (628)
T 4a0p_A 34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-----------FGLDYPEGMAVDWLGKNLYWADTGTN 102 (628)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------SSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-----------CCCCCcceEEEEeCCCEEEEEECCCC
Confidence 34668999998 467888 9999999999986 3 2333321 22367999999976 59999998754
Q ss_pred -EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCC
Q psy4771 134 -LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS 211 (337)
Q Consensus 134 -v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~ 211 (337)
|.+++++++..+.+... .+..|++|++|+ +|.|||||++
T Consensus 103 ~I~v~~~dG~~~~~l~~~---------------------------------------~l~~P~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 103 RIEVSKLDGQHRQVLVWK---------------------------------------DLDSPRALALDPAEGFMYWTEWG 143 (628)
T ss_dssp EEEEEETTSTTCEEEECS---------------------------------------SCCCEEEEEEETTTTEEEEEECS
T ss_pred EEEEEecCCCcEEEEEeC---------------------------------------CCCCcccEEEccCCCeEEEeCCC
Confidence 89999887665555421 466799999997 7899999975
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGL 291 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~ 291 (337)
. .++|+++++++...+.+..++..|+||++++++++||++|...++|.+++++|.. .+++.+.+
T Consensus 144 ~-------------~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~---~~v~~~~l 207 (628)
T 4a0p_A 144 G-------------KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN---REVIADDL 207 (628)
T ss_dssp S-------------SCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECC
T ss_pred C-------------CCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc---eEEeeccC
Confidence 2 3489999998777777888999999999999988999999999999999998753 24556555
Q ss_pred CCCCCceeECCCCCEEEEecCC
Q psy4771 292 PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 292 ~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+ .|.||++++ +++|++.+..
T Consensus 208 ~-~P~glav~~-~~ly~tD~~~ 227 (628)
T 4a0p_A 208 P-HPFGLTQYQ-DYIYWTDWSR 227 (628)
T ss_dssp S-CEEEEEEET-TEEEEEETTT
T ss_pred C-CceEEEEEC-CEEEEecCCC
Confidence 4 599999996 6899999755
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=155.58 Aligned_cols=208 Identities=25% Similarity=0.395 Sum_probs=147.3
Q ss_pred CcccCccEEEe-eCCeEE-E-------EecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC-CcEEE
Q psy4771 60 NEIHGPEAVVK-HKGDLY-M-------GVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHV 127 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~-------d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyV 127 (337)
+.+..|+++++ .++.+| + +..+++|++++. ++...+.. .. .......|.+++++++ |+|||
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~------~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE------VNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE------ETTEECCEEEEEECSSSSEEEE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc------cCCCCCCCceEEEecCCCcEEE
Confidence 34668999999 678888 5 578899999985 44433321 00 0112356999999999 99999
Q ss_pred EECCCcEEEEEcCCCeEEEE-eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEE
Q psy4771 128 ADAYFGLYKVNVTTGQTEQL-ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY 206 (337)
Q Consensus 128 ad~~~gv~~vd~~~g~~~~l-~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~ly 206 (337)
++...+|+++|++ ++...+ ... ..+ .....|+++++|++|++|
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~~---~~~--------------------------------~~~~~~~~i~~d~~g~l~ 131 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKKD---SEG--------------------------------RRMQGCNDCAFDYEGNLW 131 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSBC---TTS--------------------------------CBCBCCCEEEECTTSCEE
T ss_pred EECCCCEEEEeCC-CCEEEEEecc---CCC--------------------------------ccccCCcCEEECCCCCEE
Confidence 9976789999998 776655 421 111 134579999999999999
Q ss_pred EEcCCCCc--cCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEc----cCCCEEEEEeCCCCEEEEEEeeC-C
Q psy4771 207 WSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELS----ADESFVIVAETMSSRVHRYYLKG-P 279 (337)
Q Consensus 207 vtd~~~~~--~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~----~dg~~lyva~~~~~~I~~~~~~g-~ 279 (337)
+++..... .+. ........+.|+++|++ ++...+...+..|++++++ +||+.||+++...++|++|++++ +
T Consensus 132 v~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g 209 (314)
T 1pjx_A 132 ITAPAGEVAPADY-TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA 209 (314)
T ss_dssp EEECBCBCTTSCC-CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred EEecCcccccccc-cccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC
Confidence 99875310 000 00012234689999987 7776666677889999999 99988999999999999999862 2
Q ss_pred CCCceeeeecCCC----CCCCceeECCCCCEEEEecCC
Q psy4771 280 KQGKSEVFIDGLP----GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 280 ~~~~~~~~~~~~~----g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.......+.. .+ +.|++|++|++|++|++....
T Consensus 210 ~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 210 KIENKKVWGH-IPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp EEEEEEEEEE-CCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ccccceEEEE-CCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 2222333333 22 569999999999999997543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-18 Score=159.33 Aligned_cols=218 Identities=10% Similarity=0.090 Sum_probs=148.5
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC--
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF-- 132 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~-- 132 (337)
..+..|.+|++ .++.|| ++..+++|.+++.. ....+.. ....|. ++++++| .||+++...
T Consensus 128 a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~------------~~~~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 128 AKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP------------GFKGGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE------------TCCBCB-CEECTTSSEEEEEBSSTTC
T ss_pred cccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec------------cCCCCc-eeEecCCCcEEEEecCCCc
Confidence 34678999999 678888 88888999999873 3433321 124577 9999998 689998643
Q ss_pred cEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCC-CCCcc---cccceeeeccc-----------cCCCCCCCCc-
Q psy4771 133 GLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDS-DGQTG---QTEQLISMDTE-----------IDGAKPQIPN- 195 (337)
Q Consensus 133 gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~-~g~~~---~~~~v~~~~~~-----------~~~~~~~~pn- 195 (337)
.|++++++++.. ..+... ....+ ..|+++++++ +|+++ ..+.|..++.. ..+.....|.
T Consensus 195 ~I~~~d~~~~~~~~~~g~~-~~~~~---~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQL-GSTFS---GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEEEEGGGTTCEEEEEEC-CTTSC---SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred eEEEEEcCCCceeEEeeec-cchhc---CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 699999876654 233110 01011 2589999999 67776 22345554421 1111112244
Q ss_pred cEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc---------------ccceeeEEEccCCC
Q psy4771 196 SVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN---------------LHFANGVELSADES 259 (337)
Q Consensus 196 ~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~---------------~~~p~gia~~~dg~ 259 (337)
++++++ +|+||++|... ++|+++++++. ...+... +..|+||+++++|+
T Consensus 271 ~ia~~p~~g~lyv~d~~~--------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNL--------------SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp EEEEETTTTEEEEEETTT--------------TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred cEEEeCCCCEEEEEeCCC--------------CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 999999 58899999764 38888887643 4333321 57799999999996
Q ss_pred EEEEEeC-CCCEEEEEEeeCCCCCceeeeecC---------C-----CCCCCceeECCCCCEEEEecCC
Q psy4771 260 FVIVAET-MSSRVHRYYLKGPKQGKSEVFIDG---------L-----PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 260 ~lyva~~-~~~~I~~~~~~g~~~~~~~~~~~~---------~-----~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|||+|+ .+++|.++++.++ ....++.. . -..|.||++|++|+||||....
T Consensus 336 -lyvad~~~~~~I~~~~~~~G---~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 336 -FYIVDGFKGYCLRKLDILDG---YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp -EEEEETTTTCEEEEEETTTT---EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred -EEEEeCCCCCEEEEEECCCC---EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 999999 9999999995322 22222221 0 1359999999999999999765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-18 Score=155.44 Aligned_cols=201 Identities=19% Similarity=0.182 Sum_probs=145.6
Q ss_pred CceeccCcccCccEEEe--eCCeEE-EEecCcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECCCCcEEEE
Q psy4771 54 AEKLFENEIHGPEAVVK--HKGDLY-MGVDGGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVA 128 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVa 128 (337)
++.+.+....-+|+.++ +++.+| ++..+++|++++..+ ...+ .. ...+.+++++++|++||+
T Consensus 40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~------------~~~v~~i~~~~dg~l~v~ 106 (326)
T 2ghs_A 40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL------------PFMGSALAKISDSKQLIA 106 (326)
T ss_dssp CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC------------SSCEEEEEEEETTEEEEE
T ss_pred eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC------------CCcceEEEEeCCCeEEEE
Confidence 45555544445667666 246665 999999999998732 2222 11 145889999999999999
Q ss_pred ECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEE
Q psy4771 129 DAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWS 208 (337)
Q Consensus 129 d~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvt 208 (337)
. ..+|+++|+++++++.+... ..+ .....++++++|++|++|++
T Consensus 107 ~-~~gl~~~d~~~g~~~~~~~~---~~~--------------------------------~~~~~~~~i~~d~~G~l~v~ 150 (326)
T 2ghs_A 107 S-DDGLFLRDTATGVLTLHAEL---ESD--------------------------------LPGNRSNDGRMHPSGALWIG 150 (326)
T ss_dssp E-TTEEEEEETTTCCEEEEECS---STT--------------------------------CTTEEEEEEEECTTSCEEEE
T ss_pred E-CCCEEEEECCCCcEEEEeeC---CCC--------------------------------CCCCCCCCEEECCCCCEEEE
Confidence 7 46799999988887766531 111 12456899999999999998
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee--CC-CCCcee
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK--GP-KQGKSE 285 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~--g~-~~~~~~ 285 (337)
+.... .....+.|++++ +++.+.+..+...|+++++++||+.||++++..++|++|+++ ++ .....+
T Consensus 151 ~~~~~--------~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~ 220 (326)
T 2ghs_A 151 TMGRK--------AETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 220 (326)
T ss_dssp EEETT--------CCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred eCCCc--------CCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence 75321 012356899999 477766666777899999999999999999999999999986 33 333444
Q ss_pred eeec--CCCCCCCceeECCCCCEEEEecCC
Q psy4771 286 VFID--GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 286 ~~~~--~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++.. ...+.|+++++|++|++|++....
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~ 250 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGE 250 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence 4443 234679999999999999998643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=160.75 Aligned_cols=185 Identities=14% Similarity=0.229 Sum_probs=139.0
Q ss_pred ccCccEEEee--CCeEE-EEecCcEEEEEeCCc------eeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECC
Q psy4771 62 IHGPEAVVKH--KGDLY-MGVDGGHILKLSGGK------LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAY 131 (337)
Q Consensus 62 ~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~ 131 (337)
+..|.+|+++ ++.|| +|..+++|++++... ...+. ......|.||++|. .++||++|..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-----------~~~~~~p~glavD~~~~~lY~~d~~ 179 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----------SRDIQAPDGLAVDWIHSNIYWTDSV 179 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-----------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-----------eCCCCCcccEEEEecCCceEEEECC
Confidence 4579999983 67787 999999999998732 11221 12456799999998 5799999987
Q ss_pred Cc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEc
Q psy4771 132 FG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSD 209 (337)
Q Consensus 132 ~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd 209 (337)
.+ |.+++++++..+.+... .+..|++|++|+ +|.||+||
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~---------------------------------------~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRE---------------------------------------NGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp TTEEEEECTTTCSEEEEEEC---------------------------------------SSCCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCceEEEEeC---------------------------------------CCCCcceEEEecccCeEEEEe
Confidence 54 99999987766666531 356799999998 67899999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
+.. .++|+++++++...+.+. .++..|+||++++++++||++|+..++|.+++++|. ..+++.
T Consensus 221 ~~~-------------~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~ 284 (400)
T 3p5b_L 221 WGT-------------PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTIL 284 (400)
T ss_dssp CSS-------------SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CCEEEE
T ss_pred CCC-------------CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC---ccEEEE
Confidence 763 248999998865554443 568999999999988899999999999999999874 234444
Q ss_pred cC--CCCCCCceeECCCCCEEEEecCC
Q psy4771 289 DG--LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 289 ~~--~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.. .-..|.||+++. +++|++.+..
T Consensus 285 ~~~~~l~~P~gl~v~~-~~lywtd~~~ 310 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVFE-DKVFWTDIIN 310 (400)
T ss_dssp ECSSTTSSEEEEEEET-TEEEEEESSS
T ss_pred eCCCCCCCCEEEEEeC-CEEEEecCCC
Confidence 32 124699999975 4677777654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=153.23 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=116.4
Q ss_pred ccCccEEEe-eCCeEE-EEecC------------------------cEEEEEeCCceeEEEecCccccCccccCccCCcc
Q psy4771 62 IHGPEAVVK-HKGDLY-MGVDG------------------------GHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPL 115 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly-~d~~~------------------------g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~ 115 (337)
+..|.+|++ .+|.+| ++..+ ++|++++..+...+..++. ..+..|.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK--------NLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT--------TTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC--------CccCCce
Confidence 457899999 678898 66666 3689998743322333331 3456899
Q ss_pred eEEECCCCcEEEEECCC-cEEEEEcCCC--eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 116 GIKFDKNGALHVADAYF-GLYKVNVTTG--QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 116 Gl~~d~~G~lyVad~~~-gv~~vd~~~g--~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
||++|++|+|||+|... .|+++|+++. .+..+... ...|. ....+.
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~--~~~g~-----------------------------~~~~~~ 143 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS--MQPGS-----------------------------DQNHFC 143 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT--TBCCC-----------------------------STTCCS
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc--CCCCC-----------------------------CccccC
Confidence 99999999999999864 4999998765 34444321 01110 011467
Q ss_pred CCccEEEcC-CCcEEEEcC-CCCccCceeeeeecCCccEEEEcCCCCeeEEEe----------ccccceeeEEEccCCCE
Q psy4771 193 IPNSVTVDS-DGMVYWSDS-STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI----------ANLHFANGVELSADESF 260 (337)
Q Consensus 193 ~pn~v~vd~-~G~lyvtd~-~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~----------~~~~~p~gia~~~dg~~ 260 (337)
.|++|++++ +|++|++|. .. ++|.++|+++.....+. ..+..|+||+++++++.
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~--------------~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~ 209 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCN--------------SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ 209 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSC--------------CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred CCcEEEEeCCCCeEEEEeCCCC--------------CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence 899999999 899999996 32 37888886544333332 23567999999999668
Q ss_pred EEEEeCCCCEEEEEEee
Q psy4771 261 VIVAETMSSRVHRYYLK 277 (337)
Q Consensus 261 lyva~~~~~~I~~~~~~ 277 (337)
|||++...++|.+|+.+
T Consensus 210 l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCEEEEEECC
Confidence 99999999999999987
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-18 Score=162.04 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=134.6
Q ss_pred cccCccEEEee----CCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-
Q psy4771 61 EIHGPEAVVKH----KGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF- 132 (337)
Q Consensus 61 ~~~~P~~i~~~----~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~- 132 (337)
.+..|.+|+++ ++.|| +|.. ++|++++. +.+..+. ....+|.||++|++|+|||+|...
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~------------~~~~~P~giavd~dG~lyVad~~~~ 203 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT------------TNIGQCADVNFTLNGDMVVVDDQSS 203 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC------------CCCSCEEEEEECTTCCEEEEECCSC
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee------------cCCCCccEEEECCCCCEEEEcCCCC
Confidence 56789999994 48899 6666 89999997 3333331 245679999999999999999632
Q ss_pred ----cEEEEEcCCCeEE--EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcE
Q psy4771 133 ----GLYKVNVTTGQTE--QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMV 205 (337)
Q Consensus 133 ----gv~~vd~~~g~~~--~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~l 205 (337)
+++.++..++... .+. .+..|+++++|+ +|+|
T Consensus 204 ~~~~gv~~~~~~~~~~~~~~~~-----------------------------------------~~~~P~giavd~~~G~l 242 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFTERLSLC-----------------------------------------NARGAKTCAVHPQNGKI 242 (433)
T ss_dssp TTSEEEEEECGGGTTCCEEEEE-----------------------------------------ECSSBCCCEECTTTCCE
T ss_pred cccceEEEEECCCCeecccccc-----------------------------------------ccCCCCEEEEeCCCCeE
Confidence 3666665433211 110 367799999999 8999
Q ss_pred EEEcCCCCccCceeeeeecCCccEEEEcCCCCee-EEEec--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC--CC
Q psy4771 206 YWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-KVLIA--NLHFANGVELSADESFVIVAETMSSRVHRYYLKG--PK 280 (337)
Q Consensus 206 yvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g--~~ 280 (337)
||+|.. +++|+++|+++++. +.+.. ....+.+|+++++|++|||++..+++|+++++++ ..
T Consensus 243 yv~d~~--------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 243 YYTRYH--------------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp EECBTT--------------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred EEEECC--------------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 999976 34899999987766 33322 2345678999999999999999999999999874 22
Q ss_pred CCceeeeecC--CC------------CCCCceeE---------CCCCCEEEEecCC
Q psy4771 281 QGKSEVFIDG--LP------------GLPDNVKR---------DSKGNFLVSLVCP 313 (337)
Q Consensus 281 ~~~~~~~~~~--~~------------g~Pdgi~~---------d~dG~l~va~~~~ 313 (337)
.....+++.. .. ..|.||++ |.+|+|||+....
T Consensus 309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n 364 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS 364 (433)
T ss_dssp BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence 2333344331 11 23788999 9999999999766
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-18 Score=155.41 Aligned_cols=226 Identities=12% Similarity=0.110 Sum_probs=153.8
Q ss_pred CccEEEeeCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCC
Q psy4771 64 GPEAVVKHKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTT 141 (337)
Q Consensus 64 ~P~~i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~ 141 (337)
.|+++++.++.+| +...+++|.++|..+.+.+..+ .....|.+|+++++|++||++.+ ..|.++|+++
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i----------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI----------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE----------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEc----------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 5888988889999 6777789999998544433333 12366999999888999999944 5699999999
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc--c---ccceeeeccccCC-----CCCCCCccEEEcCCCcEEEEcCC
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--Q---TEQLISMDTEIDG-----AKPQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~---~~~v~~~~~~~~~-----~~~~~pn~v~vd~~G~lyvtd~~ 211 (337)
+++........ ..+ ....|+++++ .+++++ . .+.|..++..-.. .....|++++++++|++|+++..
T Consensus 115 ~~~~~~i~~g~-~~~-~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 115 YEITGYIECPD-MDM-ESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp TEEEEEEECTT-CCT-TTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCC
T ss_pred CeEEEEEEcCC-ccc-cCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECC
Confidence 88765443110 000 1124889999 456665 1 3456666522110 12356999999999999999876
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~ 289 (337)
... + .......+.|+++|++++++..... ....|+++++++|+++||+++. .|++++.+..+... ..+..
T Consensus 192 ~~~-~---~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~~~~~ 263 (328)
T 3dsm_A 192 GYE-G---SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV-RPFLE 263 (328)
T ss_dssp BCT-T---CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS-SCSBC
T ss_pred Ccc-C---CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceee-eeeec
Confidence 310 0 0000114689999999887653332 1347999999999999999986 89999986544322 12222
Q ss_pred CCCCCCCceeECC-CCCEEEEe
Q psy4771 290 GLPGLPDNVKRDS-KGNFLVSL 310 (337)
Q Consensus 290 ~~~g~Pdgi~~d~-dG~l~va~ 310 (337)
.....|+||++|+ +|++||+.
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEEcCCCCeEEEEc
Confidence 1134699999998 78899998
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=166.76 Aligned_cols=187 Identities=18% Similarity=0.212 Sum_probs=138.4
Q ss_pred CcccCccEEEe--eCCeEE-EEecCcEEEEEeCCce---eEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCC
Q psy4771 60 NEIHGPEAVVK--HKGDLY-MGVDGGHILKLSGGKL---VPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYF 132 (337)
Q Consensus 60 g~~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~ 132 (337)
..+..|.+|++ .++.|| +|..+++|+|++..+. ..+. ......|.||++|.. ++||++|...
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-----------~~~~~~P~GlAvD~~~~~ly~~d~~~ 105 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-----------VSGLLSPDGLACDWLGEKLYWTDSET 105 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-----------eCCCCCcCeEEEEecCCEEEEEeCCC
Confidence 34567999988 478888 9999999999987322 2221 123467999999985 6999999775
Q ss_pred c-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEcC
Q psy4771 133 G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDS 210 (337)
Q Consensus 133 g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd~ 210 (337)
+ |.+++.++...+.+... .+..|++|++|+. |.|||||+
T Consensus 106 ~~I~v~~~dG~~~~~l~~~---------------------------------------~l~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 106 NRIEVSNLDGSLRKVLFWQ---------------------------------------ELDQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp TEEEEEETTSCSCEEEECS---------------------------------------SCSCCCCEEEETTTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeC---------------------------------------CCCCCceEEEecCCCeEEEecc
Confidence 5 88899987666665521 4677999999985 78999997
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~ 289 (337)
+. .++|++.++++...+.+. ..+..|+||+++++++.||++|...++|++++++|. ..+.+..
T Consensus 147 g~-------------~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~---~~~~~~~ 210 (619)
T 3s94_A 147 GE-------------VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVK 210 (619)
T ss_dssp SS-------------SCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC---EEC----
T ss_pred CC-------------CCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC---ccEEEEe
Confidence 62 248999988765555554 578899999999988899999999999999999874 2333333
Q ss_pred CCCCCCCceeECCCCCEEEEecCC
Q psy4771 290 GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 290 ~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..-..|.||+++++ ++|++.+..
T Consensus 211 ~~~~~P~gi~~~~~-~ly~td~~~ 233 (619)
T 3s94_A 211 GSLPHPFALTLFED-ILYWTDWST 233 (619)
T ss_dssp -----CCCEEESSS-EEEEECTTT
T ss_pred CCCCCceEEEEeCC-EEEEecCCC
Confidence 22246999999977 899998766
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=153.83 Aligned_cols=202 Identities=18% Similarity=0.213 Sum_probs=132.0
Q ss_pred cCccEEEe-eCCeEEEEec---Cc--EEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-----
Q psy4771 63 HGPEAVVK-HKGDLYMGVD---GG--HILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY----- 131 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly~d~~---~g--~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~----- 131 (337)
..|++|++ .+|.+|+... ++ +|++++.++.. .+..... ........|.|+++|++|+|||+|..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~--~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG--NAIITFDTVLGIKSDGNGIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCCS--SCCCCCSCEEEEEECSSSEEEEEECHHHHTS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCccc--CcccceeEeeEEEEcCCCcEEEEcCCCCcCC
Confidence 57999999 5889995532 33 78888844332 2221000 01134578999999999999999975
Q ss_pred -CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEc
Q psy4771 132 -FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSD 209 (337)
Q Consensus 132 -~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd 209 (337)
..|+++|++++++......... .+ .....++++++|+ +|.+|++|
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~-~~--------------------------------~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPP-IT--------------------------------LSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTT-TS--------------------------------CTTCCCCEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCeEEEEEECChh-hc--------------------------------ccccccceEEEecCCCEEEEEc
Confidence 4699999988885443321000 00 1345789999997 47899999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc------------------------------ccceeeEEEccCCC
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN------------------------------LHFANGVELSADES 259 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~------------------------------~~~p~gia~~~dg~ 259 (337)
.+.. ..+.|+++|+++++......+ ...++||++++||+
T Consensus 139 ~~~~-----------~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~ 207 (343)
T 2qe8_A 139 PAPD-----------DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE 207 (343)
T ss_dssp CCSG-----------GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred CccC-----------CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC
Confidence 8421 122455555544443332211 12489999999999
Q ss_pred EEEEEeCCCCEEEEEEee---CCCCCceeeeec----CCCCCCCceeECCCCCEEEEecCC
Q psy4771 260 FVIVAETMSSRVHRYYLK---GPKQGKSEVFID----GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~---g~~~~~~~~~~~----~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+||+++..+++|++++.+ ....+..+++.. +..+.|+||++|++|++|++....
T Consensus 208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~ 268 (343)
T 2qe8_A 208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH 268 (343)
T ss_dssp EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG
T ss_pred EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCC
Confidence 999999999999999864 112222211110 123579999999999999999755
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-17 Score=163.23 Aligned_cols=185 Identities=18% Similarity=0.191 Sum_probs=140.3
Q ss_pred ccCccEEEee--CCeEE-EEecCcEEEEEeC-Cc-eeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-E
Q psy4771 62 IHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-L 134 (337)
Q Consensus 62 ~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v 134 (337)
+..|.+|+++ ++.|| +|..+++|+|++. ++ .+.+. ......|.||++|. .++||++|...+ |
T Consensus 348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-----------~~~~~~p~GlAvD~~~~~lY~tD~~~~~I 416 (619)
T 3s94_A 348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-----------TAQIAHPDGIAVDWVARNLYWTDTGTDRI 416 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----------CSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-----------ECCCCCcCceEEecccCcEEEEeCCCCcE
Confidence 5578888883 67888 9999999999987 32 22332 13347899999996 569999998755 8
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~ 213 (337)
.+++.++...+.+.. ..+..|++|++|+ +|.|||||++.
T Consensus 417 ~v~~~~G~~~~~l~~---------------------------------------~~l~~P~~iavdp~~G~ly~tD~g~- 456 (619)
T 3s94_A 417 EVTRLNGTMRKILIS---------------------------------------EDLEEPRAIVLDPMVGYMYWTDWGE- 456 (619)
T ss_dssp EEEETTSCSCEEEEC---------------------------------------TTCCSEEEEEEETTTTEEEEEECSS-
T ss_pred EEEeCCCCeEEEEEE---------------------------------------CCCCCeeeEEEEcCCCcEEEecCCC-
Confidence 888887665555542 1467899999998 48999999863
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP 292 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~ 292 (337)
.++|++.+.++...+.+. ..+..|+||++++++++|||+|+..++|.+++++|.. .+++....-
T Consensus 457 ------------~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~l 521 (619)
T 3s94_A 457 ------------IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG---RRVLVEDKI 521 (619)
T ss_dssp ------------SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEEECCC
T ss_pred ------------CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc---eEEEeccCC
Confidence 247888888755444444 4589999999999888999999999999999998753 233332223
Q ss_pred CCCCceeECCCCCEEEEecCC
Q psy4771 293 GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..|.||+++.+ ++|++.+..
T Consensus 522 ~~P~glav~~~-~ly~tD~~~ 541 (619)
T 3s94_A 522 PHIFGFTLLGD-YVYWTDWQR 541 (619)
T ss_dssp CSSCCEEEETT-EEEEECTTS
T ss_pred CCcEEEEEECC-EEEEeecCC
Confidence 45999999865 899999766
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-16 Score=141.11 Aligned_cols=215 Identities=13% Similarity=0.167 Sum_probs=153.7
Q ss_pred cccCccEEEe-eCCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEE
Q psy4771 61 EIHGPEAVVK-HKGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYK 136 (337)
Q Consensus 61 ~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~ 136 (337)
....|.++++ .+|.+| ++..+++|.+++.. +...+. .. .....|.+|+++++|++||++.. .+|++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~-~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFE-VP---------TPDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE-CS---------STTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEE-CC---------CCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 3568999999 678899 66678999999875 333221 11 22367999999999999999975 45999
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccC------CCCCCCCccEEEcCCCcEE
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEID------GAKPQIPNSVTVDSDGMVY 206 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~------~~~~~~pn~v~vd~~G~ly 206 (337)
+|++ ++...+..+ ..+ ..|.+++++++|+++ ..+.|..++.... ......|++++++++|++|
T Consensus 88 ~d~~-g~~~~~~~~---~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 88 LSKK-GGFTEYPLP---QPD---SGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp ECTT-SCEEEEECS---STT---CCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred ECCC-CCeEEecCC---CCC---CCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEE
Confidence 9998 666554321 111 248999999999987 2346666653210 1135679999999999999
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS 284 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~ 284 (337)
+++... +.|+++|+ +++..... .....|.+|+++++| .||+++...++|.+++.++. .
T Consensus 161 v~~~~~--------------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~----~ 220 (300)
T 2qc5_A 161 FTENQN--------------NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGE----I 220 (300)
T ss_dssp EEETTT--------------TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCC----E
T ss_pred EEecCC--------------CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCc----E
Confidence 998652 37899998 45554432 345689999999998 59999999899999987332 2
Q ss_pred eee-ecCCCCCCCceeECCCCCEEEEecC
Q psy4771 285 EVF-IDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 285 ~~~-~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
..+ .......|.+|++|++|++|++...
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 222 1111235899999999999999965
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-17 Score=155.45 Aligned_cols=185 Identities=11% Similarity=0.140 Sum_probs=133.5
Q ss_pred cccCccEEEee---CCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCC-
Q psy4771 61 EIHGPEAVVKH---KGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF- 132 (337)
Q Consensus 61 ~~~~P~~i~~~---~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~- 132 (337)
.+..|.+++++ ++.|| ++.. ++|.+++.. .+..+. ....+|.+|++|++|+ |||+|...
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~------------~~~~~P~~ia~d~~G~~lyvad~~~~ 201 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVY------------SGLSKVRTICWTHEADSMIITNDQNN 201 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEE------------CCCSCEEEEEECTTSSEEEEEECCSC
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEe------------cCCCCcceEEEeCCCCEEEEEeCCCC
Confidence 46689999995 47899 6666 999999973 333332 2446799999999996 99999632
Q ss_pred ----cEEEEEcCCCeE--EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcE
Q psy4771 133 ----GLYKVNVTTGQT--EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMV 205 (337)
Q Consensus 133 ----gv~~vd~~~g~~--~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~l 205 (337)
.++.++.+++.. ..+. .+..|+++++++ +|+|
T Consensus 202 ~~~~~v~~~~~~g~~~~~~~l~-----------------------------------------~~~~p~giavdp~~g~l 240 (430)
T 3tc9_A 202 NDRPNNYILTRESGFKVITELT-----------------------------------------KGQNCNGAETHPINGEL 240 (430)
T ss_dssp TTSEEEEEEEGGGTSCSEEEEE-----------------------------------------ECSSCCCEEECTTTCCE
T ss_pred cccceEEEEeCCCceeeeeeec-----------------------------------------cCCCceEEEEeCCCCEE
Confidence 356666654321 1111 256799999999 8999
Q ss_pred EEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC--CC
Q psy4771 206 YWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--KQ 281 (337)
Q Consensus 206 yvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--~~ 281 (337)
||+|... ++|+++++++++...+. .....|++|+++++|++|||++...++|++++.++. ..
T Consensus 241 yv~d~~~--------------~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~ 306 (430)
T 3tc9_A 241 YFNSWNA--------------GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRL 306 (430)
T ss_dssp EEEETTT--------------TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEECCC--------------CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccc
Confidence 9999863 48999999877653332 234679999999999999999999999999999863 12
Q ss_pred CceeeeecC--CC------------CCCC-ceeE--------CCCCCEEEEecCC
Q psy4771 282 GKSEVFIDG--LP------------GLPD-NVKR--------DSKGNFLVSLVCP 313 (337)
Q Consensus 282 ~~~~~~~~~--~~------------g~Pd-gi~~--------d~dG~l~va~~~~ 313 (337)
....+++.. .. ..|. |+++ |++|+|||+....
T Consensus 307 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n 361 (430)
T 3tc9_A 307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361 (430)
T ss_dssp CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence 222333321 11 1377 8888 5679999999765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-16 Score=139.35 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=151.6
Q ss_pred ccCccEEEe-eCCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEE
Q psy4771 62 IHGPEAVVK-HKGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKV 137 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~v 137 (337)
...|.++++ .++.+| ++..+++|++++.. +...+. .. .....|.+++++++|++||++.. .+|+++
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~-~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 130 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYP-LP---------QPDSGPYGITEGLNGDIWFTQLNGDRIGKL 130 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE-CS---------STTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEec-CC---------CCCCCCccceECCCCCEEEEccCCCeEEEE
Confidence 357999998 678899 66668899999874 333221 11 12367999999999999999874 459999
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeecccc------CCCCCCCCccEEEcCCCcEEE
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEI------DGAKPQIPNSVTVDSDGMVYW 207 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~------~~~~~~~pn~v~vd~~G~lyv 207 (337)
|++ +++..+... ..+ ..|..++++++|+++ ..+.|..++... .......|.+++++++|++|+
T Consensus 131 ~~~-g~~~~~~~~---~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 203 (300)
T 2qc5_A 131 TAD-GTIYEYDLP---NKG---SYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWF 203 (300)
T ss_dssp CTT-SCEEEEECS---STT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred CCC-CCEEEccCC---CCC---CCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEE
Confidence 998 666554321 111 258899999999977 234666665310 011346789999999999999
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCcee
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSE 285 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~ 285 (337)
++... +.|+++|+ +++..... .....|.+|+++++|+ |||++...++|.+|+.++ ...
T Consensus 204 ~~~~~--------------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~ 263 (300)
T 2qc5_A 204 VEIMG--------------NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDN----TIQ 263 (300)
T ss_dssp EETTT--------------TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTS----CEE
T ss_pred EccCC--------------CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCC----cEE
Confidence 98752 37889998 45544332 3467899999999985 999999889999999743 222
Q ss_pred eee-cCCCCCCCceeECCCCCEEEEec
Q psy4771 286 VFI-DGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 286 ~~~-~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.+. ......|.+|++|++|++|++..
T Consensus 264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 264 EYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred EEECCccCCccceeEeCCCCCEEEEcc
Confidence 221 11124599999999999999984
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-17 Score=146.51 Aligned_cols=194 Identities=24% Similarity=0.324 Sum_probs=142.4
Q ss_pred ccCccEEEe-eCCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-----
Q psy4771 62 IHGPEAVVK-HKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF----- 132 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~----- 132 (337)
...|+++++ .+|.|| ++..+++|++++.. +...+.. .....|.+++++++|++||++...
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-----------SHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-----------CSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-----------CCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 346899998 677788 78889999999873 3333211 122569999999999999998654
Q ss_pred cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCC
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST 212 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~ 212 (337)
+|+++|+++++...+... . . ....+++++++++|++|+++...
T Consensus 113 ~i~~~d~~~~~~~~~~~~---~-~---------------------------------~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIED---L-S---------------------------------TAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEECTTSCSCEEEECS---S-S---------------------------------SCCCEEEEEECTTSCEEEEECCC
T ss_pred eEEEEeCCCCEEEEEEcc---C-c---------------------------------cCCcccceEECCCCCEEEEeccc
Confidence 699999988876644321 0 0 23468999999999999998642
Q ss_pred CccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC--CCCCc--eeeee
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG--PKQGK--SEVFI 288 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g--~~~~~--~~~~~ 288 (337)
. .....+.|+++|+++++...+...+..|+++++++||+.||+++...++|++|+++. ..... ...+.
T Consensus 156 ~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 156 Y--------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp B--------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred c--------ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence 1 012356899999987777666666778999999999999999998889999999853 21111 12222
Q ss_pred cCCC--CCCCceeECCCCCEEEEecC
Q psy4771 289 DGLP--GLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 289 ~~~~--g~Pdgi~~d~dG~l~va~~~ 312 (337)
. .. ..|++|++|++|++|++...
T Consensus 228 ~-~~~~~~~~~i~~d~~G~l~v~~~~ 252 (333)
T 2dg1_A 228 Y-FTGHEGPDSCCIDSDDNLYVAMYG 252 (333)
T ss_dssp E-CCSSSEEEEEEEBTTCCEEEEEET
T ss_pred e-cCCCCCCCceEECCCCCEEEEEcC
Confidence 2 22 36999999999999999854
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=162.52 Aligned_cols=187 Identities=13% Similarity=0.187 Sum_probs=138.9
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeCCce----eEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSGGKL----VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG 133 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g 133 (337)
+..|.+|++ .++.|| +|..+++|++++..+. .....+ ...+..|.||++|..+ +|||+|...+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi---------~~~l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------SRDIQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---------CSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE---------ecCCCCcceeeeeecCCcEEEEecCCC
Confidence 457899998 367787 9999999999986321 111111 1345789999999876 9999998754
Q ss_pred -EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEcCC
Q psy4771 134 -LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSS 211 (337)
Q Consensus 134 -v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd~~ 211 (337)
|.++++++...+.++.. .+..|++|+||+. |.|||||++
T Consensus 494 ~I~v~~ldG~~~~~l~~~---------------------------------------~l~~P~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 494 TVSVADTKGVKRKTLFRE---------------------------------------NGSKPRAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp EEEEEETTSSSEEEEEEC---------------------------------------TTCCEEEEEEETTTTEEEEEECS
T ss_pred eEEEEeCCCCeEEEEEeC---------------------------------------CCCCcceEEEecCCCCEEEecCC
Confidence 99999987776666531 3567999999985 789999976
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDG 290 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~ 290 (337)
.. ++|.++++++...+.+. .++..|+||++++++++|||+|...++|.+++++|.. ..+++..
T Consensus 535 ~~-------------~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~ 598 (791)
T 3m0c_C 535 TP-------------AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILED 598 (791)
T ss_dssp SS-------------CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEEC
T ss_pred CC-------------CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc---eEEEecC
Confidence 32 48889988766554444 4688999999998888999999999999999998752 3333331
Q ss_pred --CCCCCCceeECCCCCEEEEecCC
Q psy4771 291 --LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 291 --~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.-..|.+|+++. ++||++.+..
T Consensus 599 ~~~l~~P~glav~~-~~lYwtD~~~ 622 (791)
T 3m0c_C 599 EKRLAHPFSLAVFE-DKVFWTDIIN 622 (791)
T ss_dssp TTTTSSEEEEEEET-TEEEEEETTT
T ss_pred CCccCCCCEEEEeC-CEEEEEECCC
Confidence 112488898864 4799998765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=150.23 Aligned_cols=183 Identities=15% Similarity=0.076 Sum_probs=133.9
Q ss_pred cCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cc-c
Q psy4771 103 YGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QT-E 177 (337)
Q Consensus 103 ~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~-~ 177 (337)
++......+..|.+|++|++|+|||+|.. +.|+++|++++++..+... +. .|+ ++++++|+.+ .. +
T Consensus 122 dG~~~~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----~~---~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 122 DGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----FK---GGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp CBSTTTCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----CC---BCB-CEECTTSSEEEEEBSST
T ss_pred CCcHHHcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----CC---CCc-eeEecCCCcEEEEecCC
Confidence 34444456789999999999999999976 4599999999988887642 22 477 9999999865 11 2
Q ss_pred --ceeeeccccC----------CCCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE--
Q psy4771 178 --QLISMDTEID----------GAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-- 242 (337)
Q Consensus 178 --~v~~~~~~~~----------~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~-- 242 (337)
.|..++..-. ......|+++++++ +|+||+++. .++|+++|++++....+
T Consensus 193 ~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---------------~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---------------NKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---------------TCEEEEEETTTCCEEEEEE
T ss_pred CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---------------CCcEEEEECCCCCEEEEec
Confidence 5666553211 11457899999999 789999775 24899999987765544
Q ss_pred --eccc--ccee-eEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCC--------------CCCCCceeECCC
Q psy4771 243 --IANL--HFAN-GVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGL--------------PGLPDNVKRDSK 303 (337)
Q Consensus 243 --~~~~--~~p~-gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~--------------~g~Pdgi~~d~d 303 (337)
..+. ..|. +++++++++.|||++...++|++++.++. ...++... -..|.||++|++
T Consensus 258 ~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 258 LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 2221 2245 99999977799999999999999997653 22232211 134999999999
Q ss_pred CCEEEEec-CC
Q psy4771 304 GNFLVSLV-CP 313 (337)
Q Consensus 304 G~l~va~~-~~ 313 (337)
|++||+.. ..
T Consensus 334 G~lyvad~~~~ 344 (409)
T 3hrp_A 334 GNFYIVDGFKG 344 (409)
T ss_dssp CCEEEEETTTT
T ss_pred CCEEEEeCCCC
Confidence 99999997 54
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-15 Score=136.69 Aligned_cols=216 Identities=11% Similarity=0.164 Sum_probs=152.1
Q ss_pred cccCccEEEe-eCCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEE
Q psy4771 61 EIHGPEAVVK-HKGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYK 136 (337)
Q Consensus 61 ~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~ 136 (337)
....|.++++ .+|.+| ++..+++|.+++.. ....+. .. .....|.+|++|++|++|+++.. .+|++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~-~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYP-LP---------TPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-CS---------STTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEec-CC---------cccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 3457999998 678899 55557899999874 322221 11 12367999999999999999875 45999
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeecccc------CCCCCCCCccEEEcCCCcEE
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEI------DGAKPQIPNSVTVDSDGMVY 206 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~------~~~~~~~pn~v~vd~~G~ly 206 (337)
+|++ ++...+..+ ..+ ..|.+++++++|+++ ..+.|..++... .......|++++++++|++|
T Consensus 83 ~~~~-g~~~~~~~~---~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 83 ITKK-GIIKEYTLP---NPD---SAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp ECTT-SCEEEEECS---STT---CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred ECCC-CcEEEEeCC---CcC---CCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence 9987 555554421 112 248899999999987 234666654310 01124578999999999999
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE--eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL--IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS 284 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~--~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~ 284 (337)
+++.. .+.|+++|+ +++.... ......|++++++++|+ ||+++...++|.+++.++. .
T Consensus 156 v~~~~--------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~----~ 215 (299)
T 2z2n_A 156 FTENQ--------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSGE----I 215 (299)
T ss_dssp EEETT--------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTCC----E
T ss_pred EEeCC--------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCCc----E
Confidence 98864 248899998 6665543 23466799999999986 9999998899999997322 2
Q ss_pred eeee-cCCCCCCCceeECCCCCEEEEecCC
Q psy4771 285 EVFI-DGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 285 ~~~~-~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..+. ......|.+|++|++|++|++....
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 245 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGA 245 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred EEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence 2221 1112458999999999999998543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=158.33 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=139.9
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeC-Cce-eEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-E
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-L 134 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v 134 (337)
+..+.+|++ .++.|| +|..+++|+|++. ++. ..+..-... .......|.||++|..+ +||++|...+ |
T Consensus 339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~-----~~~~~~~p~glAvD~~~~nLY~td~~~~~I 413 (628)
T 4a0p_A 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVP-----SQNLEIQPYDLSIDIYSRYIYWTCEATNVI 413 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------CCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccc-----cccccCCcceEEeeccCCeEEEEcCCCCEE
Confidence 456777877 367787 9999999999986 322 222110000 00235689999999985 8999998755 7
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~ 213 (337)
.+++.++...+.+... .+..|++|++|+ +|.|||||+...
T Consensus 414 ~v~~~~G~~~~~l~~~---------------------------------------~l~~Pr~iavdp~~g~ly~tD~g~~ 454 (628)
T 4a0p_A 414 NVTRLDGRSVGVVLKG---------------------------------------EQDRPRAVVVNPEKGYMYFTNLQER 454 (628)
T ss_dssp EEEETTSCEEEEEEEC---------------------------------------TTCCEEEEEEETTTTEEEEEEEETT
T ss_pred EEEECCCCeEEEEEeC---------------------------------------CCCceeeEEEecCCCeEEEeecCCC
Confidence 7777765544444421 356799999999 899999998632
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP 292 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~ 292 (337)
.++|++.++++...+.+.. .+..|+||+++++++.||++|...++|.+++++|. ..+++.....
T Consensus 455 ------------~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~---~r~~~~~~~~ 519 (628)
T 4a0p_A 455 ------------SPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA---NRIVLEDSNI 519 (628)
T ss_dssp ------------EEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSC
T ss_pred ------------CCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC---ceEEEEcCCC
Confidence 1379999988665555554 68899999999998899999999999999999875 2455554333
Q ss_pred CCCCceeECCCCCEEEEecCC
Q psy4771 293 GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..|.||+++. |++|++.+..
T Consensus 520 ~~P~glav~~-~~ly~tD~~~ 539 (628)
T 4a0p_A 520 LQPVGLTVFE-NWLYWIDKQQ 539 (628)
T ss_dssp SCEEEEEEET-TEEEEEETTT
T ss_pred CCcEEEEEEC-CEEEEEECCC
Confidence 4699999987 7899999766
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=168.74 Aligned_cols=188 Identities=12% Similarity=0.197 Sum_probs=135.3
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeCCce---eEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC-c
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSGGKL---VPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF-G 133 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-g 133 (337)
+..|++|++ .++.|| +|..+++|++++..+. .....+ .......|.||++|. .|+|||+|... .
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~--------i~~~~~~P~glavD~~~g~LY~tD~~~~~ 476 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--------ISRDIQAPDGLAVDWIHSNIYWTDSVLGT 476 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB--------CCSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE--------EeCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence 457899998 367788 8999999999986321 000000 012346799999995 56999999764 4
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSST 212 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~ 212 (337)
|.+++++++..+.++.. .+..|++|++|+ +|.||++|+..
T Consensus 477 I~v~d~dg~~~~~l~~~---------------------------------------~~~~P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 477 VSVADTKGVKRKTLFRE---------------------------------------QGSKPRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp EEEEBSSSCCEEEECCC---------------------------------------SSCCCCCEECCSSSSCCEECCCSS
T ss_pred EEEEecCCCceEEEEeC---------------------------------------CCCCcceEEEccCCCcEEEcccCC
Confidence 99999987766665431 356799999998 56799999752
Q ss_pred CccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecC-
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDG- 290 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~- 290 (337)
.++|+++++++...+++. ..+..|+|||+++++++|||+++..++|.+++++|. ..++++..
T Consensus 518 -------------~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~ 581 (699)
T 1n7d_A 518 -------------PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDE 581 (699)
T ss_dssp -------------SCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCS
T ss_pred -------------CCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecC
Confidence 248888887654444443 568899999999998899999999999999999863 23444431
Q ss_pred -CCCCCCceeECCCCCEEEEecCC
Q psy4771 291 -LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 291 -~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.-+.|+||++|.+ ++|++.+..
T Consensus 582 ~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 582 KRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp SSCSSCCCCEEETT-EEEEECSTT
T ss_pred CcCCCceEeEEECC-EEEEEeCCC
Confidence 2246999999976 677777654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-15 Score=136.12 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=130.2
Q ss_pred ccCcccCccEEEee--CCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECC-
Q psy4771 58 FENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAY- 131 (337)
Q Consensus 58 ~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~- 131 (337)
....+..|++++++ ++.+| ++..+++|.+++.. +..... . ......|.|+++|++ |+|||++..
T Consensus 74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-~---------~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-F---------DTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-E---------CSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE-E---------ECCCCCccEEEEeeCCCEEEEEECCC
Confidence 33445689999993 67888 89999999999873 222111 1 122367999999994 799999975
Q ss_pred --CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEE
Q psy4771 132 --FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWS 208 (337)
Q Consensus 132 --~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvt 208 (337)
..|++++.++...+.+.. ..+..|+++++|++ ++||++
T Consensus 144 ~~~~I~~~~~dg~~~~~~~~---------------------------------------~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 144 DNPKIETSHMDGTNRRILAQ---------------------------------------DNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp SSCEEEEEETTSCCCEEEEC---------------------------------------TTCSCEEEEEEETTTTEEEEE
T ss_pred CCcEEEEEecCCCCcEEEEE---------------------------------------CCCCCCcEEEEcCCCCEEEEE
Confidence 248888887554444432 03567999999996 569999
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
|... ++|+++|++++..+.+...+..|.||+++ ++.|||++..+++|.+++.++++. ...+.
T Consensus 185 d~~~--------------~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~--~~~i~ 246 (267)
T 1npe_A 185 DAGT--------------HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE--MDTFH 246 (267)
T ss_dssp ETTT--------------TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE--EEEEC
T ss_pred ECCC--------------CEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc--eEEEc
Confidence 9874 38999999876666666778899999985 458999999999999999764321 22222
Q ss_pred cCCCCCCCceeECCCCC
Q psy4771 289 DGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 289 ~~~~g~Pdgi~~d~dG~ 305 (337)
.+....|.||++.++++
T Consensus 247 ~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSSCCCCCCEEEECSCC
T ss_pred cccccccceeeecCccC
Confidence 22112499999999875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=138.96 Aligned_cols=185 Identities=20% Similarity=0.257 Sum_probs=131.0
Q ss_pred CccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceee-CCCCCcc--c---ccceee
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV-DSDGQTG--Q---TEQLIS 181 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~-~~~g~~~--~---~~~v~~ 181 (337)
..+..|.+++++++|++||++... +|.++|+++..+..+.... ...+ ....|.++++ +++|+++ . .+.|..
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-~~~~-~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG-KRDS-QLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS-SSTT-CBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC-CCcc-cccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 456789999999999999998654 5999998865555543210 0011 1235889999 6888887 2 346665
Q ss_pred eccc------cCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEE
Q psy4771 182 MDTE------IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVE 253 (337)
Q Consensus 182 ~~~~------~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia 253 (337)
++.. +.......|++++++++|++|+++... ++|+++|+++.....+. ..+..|++|+
T Consensus 105 ~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------------~~i~~~~~~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 105 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV--------------MRVIIFDQNGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT--------------TEEEEECTTSCEEEEEECTTTCSSEEEEE
T ss_pred ECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCC--------------CEEEEEcCCCCEEEEeCCCCccCCcEEEE
Confidence 5521 111235679999999999999998753 48899997654444333 3467899999
Q ss_pred EccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEecCC
Q psy4771 254 LSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 254 ~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++++| .+||++...++|.+|+.++.. ...+.. +....|.+|++|++|++||+....
T Consensus 171 ~~~~g-~l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~ 227 (286)
T 1q7f_A 171 VNDKQ-EIFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHN 227 (286)
T ss_dssp ECSSS-EEEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred ECCCC-CEEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence 99998 599999999999999975431 222221 112459999999999999998643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-16 Score=142.65 Aligned_cols=212 Identities=13% Similarity=0.160 Sum_probs=133.7
Q ss_pred cCcccCccEEEe-eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEEC-C-C
Q psy4771 59 ENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADA-Y-F 132 (337)
Q Consensus 59 ~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~-~-~ 132 (337)
.+.+..|.++++ .+|.+| ++..+++|.+++. ++...+..++...........+..|.||++++ +|+|||+|. . +
T Consensus 87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 345668999999 678888 8889999999997 33212233332111000124456899999999 799999996 3 4
Q ss_pred cEEEEEcCCCeEEEEeccccccC--CCCCCCCCceeeCCC-CCcc----cccceeeeccc-------cCC-CCCCCCccE
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEID--GAKPQIPNSVTVDSD-GQTG----QTEQLISMDTE-------IDG-AKPQIPNSV 197 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~--g~~~~~P~~v~~~~~-g~~~----~~~~v~~~~~~-------~~~-~~~~~pn~v 197 (337)
.|.++++++..+..+........ ......|.+++++++ |+++ ..++|..++.. +.. .....+.++
T Consensus 167 ~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 167 RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred eEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 59999977555555432110000 011235888999888 7776 23455555532 000 011234555
Q ss_pred EEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe----ccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 198 TVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI----ANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 198 ~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~----~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
++.+ |.+|.++.... +......+++.+|..+++..... ..+..|++|++++|| .|||++...++|++
T Consensus 247 ~~~p-g~~~~~~g~~~-------v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 247 SYIP-GFLFAVNGKPY-------FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWK 317 (329)
T ss_dssp EEET-TEEEEEECCCC-------TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEE
T ss_pred eecC-CEEEEeCCCEE-------eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEE
Confidence 5655 44444433210 00112347888887777765543 457789999999999 89999999999999
Q ss_pred EEeeCC
Q psy4771 274 YYLKGP 279 (337)
Q Consensus 274 ~~~~g~ 279 (337)
|++++.
T Consensus 318 ~~~~~~ 323 (329)
T 3fvz_A 318 FTLTEK 323 (329)
T ss_dssp EEEEEC
T ss_pred EeCCcc
Confidence 999864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-15 Score=130.54 Aligned_cols=211 Identities=11% Similarity=0.121 Sum_probs=149.7
Q ss_pred cCccEEEe-eCCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEE
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVN 138 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd 138 (337)
..|.++++ .+|.+| ++..+++|++++.. +...+. .. .....|.+|+++++|+|||++.. .+|+++|
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~-~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 126 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYT-LP---------NPDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE-CS---------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEe-CC---------CcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence 47899998 678899 56668899999873 433322 11 13457999999999999999865 4599999
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-----c-CCCCCCCCccEEEcCCCcEEEE
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE-----I-DGAKPQIPNSVTVDSDGMVYWS 208 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~-----~-~~~~~~~pn~v~vd~~G~lyvt 208 (337)
+ +++...+... ..+ ..|.+++++++|+++ ..++|..++.. + .......|++++++++|++|++
T Consensus 127 ~-~g~~~~~~~~---~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 199 (299)
T 2z2n_A 127 D-DGKIREYELP---NKG---SYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFV 199 (299)
T ss_dssp T-TCCEEEEECS---STT---CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred C-CCCEEEecCC---CCC---CCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEE
Confidence 9 5666555321 111 148899999999887 23466665431 0 0113456889999999999999
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceee
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~ 286 (337)
+... +.|+++|+ +++..... .....|.+|+++++|+ |||++...++|.+|+.++ ....
T Consensus 200 ~~~~--------------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g----~~~~ 259 (299)
T 2z2n_A 200 EIIG--------------NKIGRITT-SGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNN----IIEE 259 (299)
T ss_dssp ETTT--------------TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTT----EEEE
T ss_pred ccCC--------------ceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCCC----ceEE
Confidence 8652 37899998 66654432 2356899999999985 999998889999999743 2223
Q ss_pred ee-cCCCCCCCceeECCCCCEEEEec
Q psy4771 287 FI-DGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 287 ~~-~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
+. ......|.++++ ++|++|++..
T Consensus 260 ~~~~~~~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 260 YPIQIKSAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp EECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred EeCCCCCCccceEEe-cCCCEEEEec
Confidence 21 111235899999 9999999975
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-15 Score=137.82 Aligned_cols=178 Identities=16% Similarity=0.241 Sum_probs=129.5
Q ss_pred eccCcccCccEEEee--CCeEE-EEecCcEEEEEeC-Cce-eEEEecCccccCccccCccCCcceEEECC-CCcEEEEEC
Q psy4771 57 LFENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADA 130 (337)
Q Consensus 57 ~~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~ 130 (337)
+....+..|++++++ ++.|| +|..+++|.+++. ++. ..+. ...+.+|.|+++|+ +|+||++|.
T Consensus 71 ~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----------~~~~~~P~~iavdp~~g~ly~~d~ 139 (316)
T 1ijq_A 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----------RENGSKPRAIVVDPVHGFMYWTDW 139 (316)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----------ECTTCCEEEEEEETTTTEEEEEEC
T ss_pred EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-----------ECCCCCcceEEeCCCCCEEEEEcc
Confidence 344456789999994 67888 8999999999987 332 2221 12346899999997 569999997
Q ss_pred CC--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEE
Q psy4771 131 YF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYW 207 (337)
Q Consensus 131 ~~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyv 207 (337)
.. .|.++++++...+.+... .+..|++|++|++ ++||+
T Consensus 140 ~~~~~I~~~~~dG~~~~~~~~~---------------------------------------~~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 140 GTPAKIKKGGLNGVDIYSLVTE---------------------------------------NIQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSSCEEEEEETTSCCEEEEECS---------------------------------------SCSCEEEEEEETTTTEEEE
T ss_pred CCCCeEEEEcCCCCCeEEEEEC---------------------------------------CCCCceEEEEeccCCEEEE
Confidence 63 599999886655555421 3678999999974 67999
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec---cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS 284 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~ 284 (337)
+|... ++|.++|.++...+.+.. .+..|.||+++ ++.||+++..+++|.+++...++ ..
T Consensus 181 ~D~~~--------------~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~--~~ 242 (316)
T 1ijq_A 181 VDSKL--------------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS--DV 242 (316)
T ss_dssp EETTT--------------TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC--CC
T ss_pred EECCC--------------CeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCc--ce
Confidence 99864 389999988655555543 36789999995 35899999999999999974221 23
Q ss_pred eeeecCCCCCCCceeECCC
Q psy4771 285 EVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 285 ~~~~~~~~g~Pdgi~~d~d 303 (337)
+++..+++. |.||++...
T Consensus 243 ~~i~~~~~~-p~~i~v~~~ 260 (316)
T 1ijq_A 243 NLLAENLLS-PEDMVLFHN 260 (316)
T ss_dssp EEEECSCSC-CCCEEEESG
T ss_pred EEEecCCCC-ceEEEEecc
Confidence 444444444 888887643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-15 Score=137.93 Aligned_cols=243 Identities=13% Similarity=0.124 Sum_probs=153.6
Q ss_pred CceeccCcccCccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCC----CcEEEE
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN----GALHVA 128 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G~lyVa 128 (337)
.+.++++ +..|+++++ .+|.+|+....|+|++++.++...+..+... ......|+||+++++ |.|||+
T Consensus 23 ~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~------~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 23 VEEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVY------HRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp EEEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCC------CSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEe------ecCCCCceeEEECCCCCCCCEEEEE
Confidence 4445554 678999999 7888996666799999986554444332210 123467999999998 799999
Q ss_pred ECC------CcEEEEEcCCCe---EEEEeccccccCCCCCCCCCceeeCCCCCcc-cc----------------cceeee
Q psy4771 129 DAY------FGLYKVNVTTGQ---TEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-QT----------------EQLISM 182 (337)
Q Consensus 129 d~~------~gv~~vd~~~g~---~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-~~----------------~~v~~~ 182 (337)
+.. +.|.+++.+++. .+.+.... .........|..+++++||+++ +. +.|..+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~-p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGI-PARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEE-CCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeC-CCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence 864 459999887553 22333210 1001112358899999999988 11 356665
Q ss_pred ccccC-------------C-----CCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC-------
Q psy4771 183 DTEID-------------G-----AKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT------- 236 (337)
Q Consensus 183 ~~~~~-------------~-----~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~------- 236 (337)
+.+.. . ..+..|+++++|+ +|+||++|...+. +.. .+...|.++.+..
T Consensus 175 ~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~---~~~---~~~dei~~i~~G~nyGwp~~ 248 (352)
T 2ism_A 175 TPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSG---EQG---YGHDEVNLIVPGGNYGWPRV 248 (352)
T ss_dssp CTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------------CCCEEEEECTTCBCCTTTC
T ss_pred cCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCC---CCC---CCCeEEEEeccCCcCCCCcc
Confidence 53220 0 0246699999999 7899999987542 000 0001233332211
Q ss_pred -------C--eeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC----CceeeeecCCCCCCCceeECCC
Q psy4771 237 -------K--KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ----GKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 237 -------~--~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~----~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
+ ...........|.|+++. +| .+||++...++|.++++++... ...+.+.+. .+.|.++++++|
T Consensus 249 ~g~~~~~~~~~p~~~~~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pd 325 (352)
T 2ism_A 249 VGRGNDPRYRDPLYFWPQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPD 325 (352)
T ss_dssp CSCCCCTTSCCCSEECTTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTT
T ss_pred cCCCCCCCCcCCeEecCCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCC
Confidence 0 011111234578999994 56 6999999999999999975431 223444442 367999999999
Q ss_pred CCEEEEecCC
Q psy4771 304 GNFLVSLVCP 313 (337)
Q Consensus 304 G~l~va~~~~ 313 (337)
|.|||+....
T Consensus 326 G~lyv~~~~~ 335 (352)
T 2ism_A 326 GALYVTTSNR 335 (352)
T ss_dssp SCEEEEECST
T ss_pred CcEEEEEeCC
Confidence 9999999754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=140.60 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=128.5
Q ss_pred eccCcccCccEEEee--CCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECC
Q psy4771 57 LFENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAY 131 (337)
Q Consensus 57 ~~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~ 131 (337)
+....+..|++++++ ++.|| ++...++|.+++. ++..... . ......|.||++|+ +|.||++|..
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~---------~~~l~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-L---------WQSLEKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-E---------CTTCSCEEEEEEETTTTEEEEEECS
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-E---------eCCCCCcceEEEecCcCeEEEeccC
Confidence 333445689999994 78888 9999999999987 3332221 1 13357799999997 5699999986
Q ss_pred C--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEE
Q psy4771 132 F--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWS 208 (337)
Q Consensus 132 ~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvt 208 (337)
. .|.++++++...+.+.. ..+..||+|++|+ +++||++
T Consensus 180 ~~~~I~r~~~dG~~~~~~~~---------------------------------------~~~~~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 180 NTPRIEASSMDGSGRRIIAD---------------------------------------THLFWPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp SSCEEEEEETTSCSCEESCC---------------------------------------SSCSCEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCCcEEEEE---------------------------------------CCCCCcceEEEeCCCCEEEEE
Confidence 5 39999988655554432 1467899999996 6779999
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEEEeCCCCEEEEEEe-eCCCCCceee
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSSRVHRYYL-KGPKQGKSEV 286 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~-~g~~~~~~~~ 286 (337)
|... ++|+++|.++...+.+ ..++..|.||+++ ++.||+++..+++|.+++. +|. ..++
T Consensus 221 D~~~--------------~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~---~~~~ 281 (349)
T 3v64_C 221 DAKH--------------HVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGK---NQEI 281 (349)
T ss_dssp ETTT--------------TEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC---SCEE
T ss_pred ECCC--------------CEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCC---ccEE
Confidence 9864 3899999876544443 3568899999994 3489999999999999984 443 2334
Q ss_pred eecCCCCCCCceeECCC
Q psy4771 287 FIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 287 ~~~~~~g~Pdgi~~d~d 303 (337)
+...+ ..|.||++...
T Consensus 282 i~~~~-~~p~gi~v~~~ 297 (349)
T 3v64_C 282 IRNKL-HFPMDIHTLHP 297 (349)
T ss_dssp EECSC-SCCCCEEEECG
T ss_pred eccCC-CCCceEEEEcc
Confidence 44333 34889988643
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-14 Score=134.40 Aligned_cols=245 Identities=13% Similarity=0.155 Sum_probs=153.6
Q ss_pred CceeccCcccCccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCC----CcEEEE
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN----GALHVA 128 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G~lyVa 128 (337)
++.++++ +..|++|++ .+|.||+....|+|++++.+..+.+..+... ......|.||+++++ |.|||+
T Consensus 21 ~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~------~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 21 ISEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVA------NVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp EEEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCC------CSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeecccee------ecCCCceeeEEeCCCCCcCCEEEEE
Confidence 4555554 678999999 7899997667799999975322344332200 122367999999997 799999
Q ss_pred ECC--------CcEEEEEcCCC--e---EEEEeccccccCCCCCCCCCceeeCCCCCcc-cc----------------cc
Q psy4771 129 DAY--------FGLYKVNVTTG--Q---TEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-QT----------------EQ 178 (337)
Q Consensus 129 d~~--------~gv~~vd~~~g--~---~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-~~----------------~~ 178 (337)
+.. ..|.+++.+++ . .+.+... ........|..+++++||+++ +. +.
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~---~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG---IPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE---EECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc---CCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 864 46999988755 1 2333221 111112358899999999988 11 35
Q ss_pred eeeeccccC-------------CCCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEEEcC------CCC-
Q psy4771 179 LISMDTEID-------------GAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNP------KTK- 237 (337)
Q Consensus 179 v~~~~~~~~-------------~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~------~~~- 237 (337)
|..++.+.. ...+..|+++++|+ +|+||++|...+..+-+..+. .|.-|-+.. ..+
T Consensus 171 I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~---~G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 171 ILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL---KGGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC---TTCBCCTTTCCSCCCCTTS
T ss_pred EEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec---CCCcCCCCcccCCCCCCCC
Confidence 666653221 01356799999999 799999998754211111110 111000000 000
Q ss_pred -eeEEEe-ccccceeeEEE-------ccCCCEEEEEeCCCCEEEEEEeeCC-CCCceeeeecCCCCCCCceeECCCCCEE
Q psy4771 238 -KNKVLI-ANLHFANGVEL-------SADESFVIVAETMSSRVHRYYLKGP-KQGKSEVFIDGLPGLPDNVKRDSKGNFL 307 (337)
Q Consensus 238 -~~~~~~-~~~~~p~gia~-------~~dg~~lyva~~~~~~I~~~~~~g~-~~~~~~~~~~~~~g~Pdgi~~d~dG~l~ 307 (337)
...... .....|.|+++ +.+| .+||++...++|+++++++. .....+.+..+..+.|.++++++||.||
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~ly 326 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGIL 326 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEE
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEE
Confidence 000111 22346899999 3566 79999999999999999753 2322344544345679999999999999
Q ss_pred EEecC
Q psy4771 308 VSLVC 312 (337)
Q Consensus 308 va~~~ 312 (337)
|+...
T Consensus 327 v~~~~ 331 (354)
T 3a9g_A 327 ISTSN 331 (354)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99863
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-15 Score=137.08 Aligned_cols=179 Identities=15% Similarity=0.191 Sum_probs=129.8
Q ss_pred eccCcccCccEEEee--CCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECC
Q psy4771 57 LFENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAY 131 (337)
Q Consensus 57 ~~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~ 131 (337)
+....+..|++++++ ++.|| +|..+++|.+++. ++..... . ......|.||++|+. |.||++|..
T Consensus 73 ~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~---------~~~~~~P~giavdp~~g~ly~td~~ 142 (318)
T 3sov_A 73 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-F---------WQELDQPRAIALDPSSGFMYWTDWG 142 (318)
T ss_dssp EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-E---------CSSCSSEEEEEEEGGGTEEEEEECS
T ss_pred EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE-E---------eCCCCCccEEEEeCCCCEEEEEecC
Confidence 333446689999994 78888 9999999999987 3332221 1 134578999999975 799999964
Q ss_pred --CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEE
Q psy4771 132 --FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWS 208 (337)
Q Consensus 132 --~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvt 208 (337)
..|+++++++...+.+... .+..||+|++|+ +++||++
T Consensus 143 ~~~~I~r~~~dG~~~~~~~~~---------------------------------------~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 143 EVPKIERAGMDGSSRFIIINS---------------------------------------EIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp SSCEEEEEETTSCSCEEEECS---------------------------------------SCSCEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEEC---------------------------------------CCCCccEEEEeccCCEEEEE
Confidence 4599999986655555421 467899999997 5679999
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeee
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVF 287 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~ 287 (337)
|... ++|+++|.++...+.+.. .+..|.|++++ ++.+|+++..+++|.+++...++. .+.+
T Consensus 184 D~~~--------------~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~--~~~i 245 (318)
T 3sov_A 184 DAKL--------------NFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEG--LREI 245 (318)
T ss_dssp ETTT--------------TEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS--CEEE
T ss_pred ECCC--------------CEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCc--eEEE
Confidence 9864 389999988665555554 68899999996 347999999999999999842211 2333
Q ss_pred ecCCCCCCCceeECCC
Q psy4771 288 IDGLPGLPDNVKRDSK 303 (337)
Q Consensus 288 ~~~~~g~Pdgi~~d~d 303 (337)
...+. .|.+|++...
T Consensus 246 ~~~~~-~P~~i~v~~~ 260 (318)
T 3sov_A 246 HSDIF-SPMDIHAFSQ 260 (318)
T ss_dssp ECCCS-SCCCEEEECG
T ss_pred eCCCC-CCcEEEEecc
Confidence 33232 4788887543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=144.77 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=134.7
Q ss_pred cCcccCccEEEee---CCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEE-------CCCCc-
Q psy4771 59 ENEIHGPEAVVKH---KGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKF-------DKNGA- 124 (337)
Q Consensus 59 ~g~~~~P~~i~~~---~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~-------d~~G~- 124 (337)
++.+..|.+|+++ ++.|| ++..+++|.+++.. .+..+...+. ....+|.+|++ +++|+
T Consensus 135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--------~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--------IPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--------SSCSBEEEEEECCCBTTTBCTTCE
T ss_pred ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--------cccCCCcEEEEeecccccCCCCCE
Confidence 4556689999995 47899 77767889999873 4444432221 23568999999 99995
Q ss_pred EEEEECCC-------cEEEEEcCC-CeEE------EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 125 LHVADAYF-------GLYKVNVTT-GQTE------QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 125 lyVad~~~-------gv~~vd~~~-g~~~------~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
|||+|... .++.++++. |.+. .+. .
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-----------------------------------------~ 245 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-----------------------------------------A 245 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-----------------------------------------E
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-----------------------------------------c
Confidence 99999754 266676443 2221 111 2
Q ss_pred CCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEEEcCC-------CCee------------EEE--eccccc
Q psy4771 191 PQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-------TKKN------------KVL--IANLHF 248 (337)
Q Consensus 191 ~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-------~~~~------------~~~--~~~~~~ 248 (337)
+.+|+++++++ +|.||+++.. .|+|+++|++ ++.. +.+ ......
T Consensus 246 ~~~p~giavdp~~g~LYvtd~~--------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~ 311 (496)
T 3kya_A 246 YKQCNGATIHPINGELYFNSYE--------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW 311 (496)
T ss_dssp ESCCCCEEECTTTCCEEEEETT--------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred CCCceEEEEcCCCCeEEEEECC--------------CCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence 45799999999 6789999986 3489999987 5553 122 123457
Q ss_pred eeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC--CCceeeeecC--CC------------CCCC-ceeEC-------CCC
Q psy4771 249 ANGVELSADESFVIVAETMSSRVHRYYLKGPK--QGKSEVFIDG--LP------------GLPD-NVKRD-------SKG 304 (337)
Q Consensus 249 p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~--~~~~~~~~~~--~~------------g~Pd-gi~~d-------~dG 304 (337)
|.+||++++|+.|||+|+.+++|++++.++.. .....+++.. .. ..|. |+++| .+|
T Consensus 312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g 391 (496)
T 3kya_A 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY 391 (496)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE
T ss_pred ceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC
Confidence 89999999999999999999999999988642 1112334331 11 1477 88887 789
Q ss_pred CEEEEecCC
Q psy4771 305 NFLVSLVCP 313 (337)
Q Consensus 305 ~l~va~~~~ 313 (337)
+||||....
T Consensus 392 ~lyVaD~~N 400 (496)
T 3kya_A 392 DFYFVDRLN 400 (496)
T ss_dssp EEEEEEGGG
T ss_pred eEEEEECCC
Confidence 999999766
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=131.51 Aligned_cols=186 Identities=22% Similarity=0.309 Sum_probs=132.1
Q ss_pred ccCccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEc
Q psy4771 62 IHGPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNV 139 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~ 139 (337)
...|.++++ .+|.+|+...+++|++++....... .+. ......|.+|+++++|+|||++... +|++++.
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 136 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLP--------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA 136 (270)
T ss_dssp CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECC--------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred cCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe-eee--------cCCcCCCcceEECCCCCEEEEECCCCEEEEEEC
Confidence 457999999 5778994433889999987332211 111 1223579999999999999998654 5888876
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccC------CCCCCCCccEEEcCCCcEEEEc
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEID------GAKPQIPNSVTVDSDGMVYWSD 209 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~------~~~~~~pn~v~vd~~G~lyvtd 209 (337)
.+........ .+ ...|.+++++++|+++ ..+.|..++.... ...+..|+++++|++|++|+++
T Consensus 137 ~~~~~~~~~~-----~~--~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~ 209 (270)
T 1rwi_B 137 GSKTQTVLPF-----TG--LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE 209 (270)
T ss_dssp TCCSCEECCC-----CS--CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred CCceeEeecc-----cc--CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEE
Confidence 5443332211 11 1258999999999987 2346666653211 1234679999999999999999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
... ++|+++|+++....... .++..|.+|++++||+ |||++...++|.+|++..
T Consensus 210 ~~~--------------~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 210 HNT--------------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp TTT--------------SCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCG
T ss_pred CCC--------------CcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCC
Confidence 753 48999998766544332 3467899999999995 999999999999999753
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-15 Score=138.50 Aligned_cols=172 Identities=16% Similarity=0.233 Sum_probs=125.7
Q ss_pred CeEEEEecCcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEEEEcCCCeEEEEe
Q psy4771 73 GDLYMGVDGGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLI 148 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~~~g~~~~l~ 148 (337)
..|+... .++|.+++... ...+. .....|.|+++|+ +++||++|...+ |++++++++..+.+.
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~------------~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLL------------NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEE------------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred ceeEeec-CccceeeccCCCcEEEEe------------cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 3444333 35588887632 22221 3456799999996 569999997654 999999887766654
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSG 227 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G 227 (337)
.. .+..|+++++|+ +|+||++|...+
T Consensus 155 ~~---------------------------------------~~~~p~glavd~~~g~lY~~d~~~~-------------- 181 (386)
T 3v65_B 155 ST---------------------------------------GLESPGGLAVDWVHDKLYWTDSGTS-------------- 181 (386)
T ss_dssp CS---------------------------------------SCSCCCCEEEETTTTEEEEEETTTT--------------
T ss_pred eC---------------------------------------CCCCccEEEEEeCCCeEEEEcCCCC--------------
Confidence 31 356799999997 678999998743
Q ss_pred cEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCC-CEEEEEEeeCCCCCceeeeecCCCCCCCceeECC-CC
Q psy4771 228 RLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMS-SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-KG 304 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~-~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~-dG 304 (337)
+|.++++++...+.+. .++..|+||+++|++++||+++... ++|++++++|.. ..++....-..|.||++|+ +|
T Consensus 182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~ 258 (386)
T 3v65_B 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGR 258 (386)
T ss_dssp EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGT
T ss_pred eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCC
Confidence 7888888765544444 5688999999999888999999998 999999988742 3333332224599999995 56
Q ss_pred CEEEEecCC
Q psy4771 305 NFLVSLVCP 313 (337)
Q Consensus 305 ~l~va~~~~ 313 (337)
+||++....
T Consensus 259 ~lY~aD~~~ 267 (386)
T 3v65_B 259 RMYWVDAKH 267 (386)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 799998655
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-15 Score=142.46 Aligned_cols=185 Identities=12% Similarity=0.217 Sum_probs=127.3
Q ss_pred ccCccEEEe-eCC-eEE-EEecCc----EEEEEeC-CceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC
Q psy4771 62 IHGPEAVVK-HKG-DLY-MGVDGG----HILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF 132 (337)
Q Consensus 62 ~~~P~~i~~-~~g-~ly-~d~~~g----~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~ 132 (337)
...|.+|++ .++ .|| ++..++ .++.++. +.......+ .....|+|+++|+ +|+|||+|...
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l----------~~~~~p~giavdp~~g~lyv~d~~~ 247 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITEL----------TKGQNCNGAETHPINGELYFNSWNA 247 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEE----------EECSSCCCEEECTTTCCEEEEETTT
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeee----------ccCCCceEEEEeCCCCEEEEEECCC
Confidence 457999999 444 488 666433 5666665 332211111 2346799999999 78999999765
Q ss_pred -cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCC-cc----cccceeeeccccC-------------------
Q psy4771 133 -GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-TG----QTEQLISMDTEID------------------- 187 (337)
Q Consensus 133 -gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~-~~----~~~~v~~~~~~~~------------------- 187 (337)
.|++++++++....+... ..+ ..|.+++++++|+ ++ ....|..++....
T Consensus 248 ~~V~~~~~~~~~~~~~~~~---~~~---~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~ 321 (430)
T 3tc9_A 248 GQVFRYDFTTQETTPLFTI---QDS---GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDW 321 (430)
T ss_dssp TEEEEEETTTTEEEEEEEC---SSS---SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCC
T ss_pred CEEEEEECCCCcEEEEEEc---CCC---CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCC
Confidence 499999998876555431 111 1489999999999 44 2345555442210
Q ss_pred ------CCCCCCCc-cEEE--------cCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--------
Q psy4771 188 ------GAKPQIPN-SVTV--------DSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-------- 244 (337)
Q Consensus 188 ------~~~~~~pn-~v~v--------d~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-------- 244 (337)
...+..|. ++++ |++|+|||+|.... +|.+++++ |++..+..
T Consensus 322 ~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~--------------~I~~i~~~-G~v~~~~g~g~~~~~G 386 (430)
T 3tc9_A 322 VDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH--------------CIRILTPQ-GRVTTFAGRGSNGTSG 386 (430)
T ss_dssp BCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT--------------EEEEECTT-SEEEEEEECCTTSSSS
T ss_pred CCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc--------------EEEEECCC-CcEEEEEeCCCCCCCc
Confidence 11367788 8888 46689999998643 77778764 55544432
Q ss_pred ---c-------ccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 245 ---N-------LHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 245 ---~-------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+ |..|.||+++++++.|||+|+.+++|.+++++
T Consensus 387 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 387 YNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 1 56899999999656899999999999999875
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=137.06 Aligned_cols=206 Identities=13% Similarity=0.108 Sum_probs=133.7
Q ss_pred CcccCccEEEee--CCeEE-EEecCcEEEEEeCC-c-eeEEEecCccc-cCccccCccCCcceEEE---CCCCcEEE-EE
Q psy4771 60 NEIHGPEAVVKH--KGDLY-MGVDGGHILKLSGG-K-LVPVVKLGKDC-YGFKYEQQCGRPLGIKF---DKNGALHV-AD 129 (337)
Q Consensus 60 g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~~-~-~~~~~~~g~~~-~~~~~~~~~~~P~Gl~~---d~~G~lyV-ad 129 (337)
.....||++.++ ++.+| ++..+++|.++++. + ...+ .+.... .+ .....|.||.+ |++|+||| ++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g----~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG----DGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS----CCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC----CCcceeeEEEEeccCCCCcEEEEEc
Confidence 345579999984 58999 78899999999984 3 2333 332100 00 11235789999 79999998 45
Q ss_pred C-------------CCcEEEEEcC---CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 130 A-------------YFGLYKVNVT---TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 130 ~-------------~~gv~~vd~~---~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
. ...|.++|+. +++....+.......+- . ...+.....
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~----------------------~----~~~g~~~~~ 138 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEF----------------------E----KKAGKRPFG 138 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHH----------------------H----HHHSSCCEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccc----------------------c----ccccccccC
Confidence 2 2348999988 66655555421111110 0 000113456
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec------cccceeeEEEccCCCEEEEEeCC
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA------NLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~------~~~~p~gia~~~dg~~lyva~~~ 267 (337)
+||+++|++|++||+++.. .+.|+++++++........ ....+|||++.|||+.|+|+++
T Consensus 139 ~nDvavD~~GnaYVt~s~~-------------~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~- 204 (334)
T 2p9w_A 139 VVQSAQDRDGNSYVAFALG-------------MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG- 204 (334)
T ss_dssp EEEEEECTTSCEEEEEEES-------------SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-
T ss_pred CceeEECCCCCEEEeCCCC-------------CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-
Confidence 9999999999999999752 0489999998654443321 1334789999999999999999
Q ss_pred CCEEEEEEeeCCCCCceeeeec------CCCCCCCce-eECCCCCE-EEEecCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFID------GLPGLPDNV-KRDSKGNF-LVSLVCP 313 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~------~~~g~Pdgi-~~d~dG~l-~va~~~~ 313 (337)
.++|.+|+++.. ...++-.. .+. .||+| .+..+|++ +|+....
T Consensus 205 ~g~L~~fD~~~p--v~~~v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~~~ 255 (334)
T 2p9w_A 205 PRALTAFDVSKP--YAWPEPVKINGDFGTLS-GTEKIVTVPVGNESVLVGARAP 255 (334)
T ss_dssp SSSEEEEECSSS--SCCCEECEESSCCCCCT-TEEEEEEEEETTEEEEEEEETT
T ss_pred CCeEEEEcCCCC--cceeecccccCCccccc-CcccccccccCCEEEEEEcCCC
Confidence 999999998732 11011111 122 38995 77788986 8887544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=137.15 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=126.3
Q ss_pred cCccEEEee--CCeEEEEecCcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECC------
Q psy4771 63 HGPEAVVKH--KGDLYMGVDGGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAY------ 131 (337)
Q Consensus 63 ~~P~~i~~~--~g~ly~d~~~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~------ 131 (337)
..|.+|+++ ++.||+....+.|++++..+ .+.+.... . ......|+++++|+ +|+|||+|..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~---~----~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSV---D----GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEE---T----TEECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccC---C----CCcccccceEEEecCCCEEEEECCccccccc
Confidence 369999984 78999544445599998742 22232110 0 12346799999999 9999999964
Q ss_pred ------------CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEE
Q psy4771 132 ------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTV 199 (337)
Q Consensus 132 ------------~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~v 199 (337)
.+|+++|++++++..+.. .+..||+|++
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----------------------------------------~~~~p~gia~ 192 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKETTLLLK----------------------------------------ELHVPGGAEV 192 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTEEEEEEE----------------------------------------EESCCCEEEE
T ss_pred ccceehcccCCCceEEEEeCCCCEEEEecc----------------------------------------CCccCcceEE
Confidence 238999988787766543 2456999999
Q ss_pred cCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCC---CeeEEEeccccceeeEEEccCCCEEEEEeCC--------
Q psy4771 200 DSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT---KKNKVLIANLHFANGVELSADESFVIVAETM-------- 267 (337)
Q Consensus 200 d~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~---~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-------- 267 (337)
+++|+ |||+|... ++|++|+.++ ++.+.+.. +..|+||+++++|+ |||++..
T Consensus 193 ~~dg~~lyv~d~~~--------------~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 193 SADSSFVLVAEFLS--------------HQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHG 256 (322)
T ss_dssp CTTSSEEEEEEGGG--------------TEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTS
T ss_pred CCCCCEEEEEeCCC--------------CeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccC
Confidence 99986 99999753 3888888764 23333332 22399999999995 9999976
Q ss_pred --CCEEEEEEeeCCCCCceeeeec--CC-CCCCCceeECCCCCEEEEecCC
Q psy4771 268 --SSRVHRYYLKGPKQGKSEVFID--GL-PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 268 --~~~I~~~~~~g~~~~~~~~~~~--~~-~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.++|.+|+.+|.. ...+.. +. ...|.+++. .+|+|||+....
T Consensus 257 ~~~~~v~~~d~~G~~---~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~ 303 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNI---LEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFH 303 (322)
T ss_dssp CEEEEEEEECTTSCE---EEEEECCTTTTTSCCCEEEE-ETTEEEEECSSC
T ss_pred CCccEEEEECCCCCE---EEEEECCCCCccccceEEEE-eCCEEEEeecCC
Confidence 5789999876431 222222 11 134778876 478999997554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-15 Score=138.22 Aligned_cols=179 Identities=16% Similarity=0.268 Sum_probs=128.6
Q ss_pred ceeccCcccCccEEEee--CCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEE
Q psy4771 55 EKLFENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVAD 129 (337)
Q Consensus 55 ~~~~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad 129 (337)
+.+....+..|++++++ ++.|| +|..+++|.+++. ++..... + ...+..|.||++|+. |.||++|
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~---------~~~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-F---------RENGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-E---------ECSSCCEEEEEEETTTTEEEEEE
T ss_pred eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-E---------eCCCCCcceEEEecccCeEEEEe
Confidence 34444456789999994 78888 9999999999987 3332221 1 134567999999984 6999999
Q ss_pred CC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEE
Q psy4771 130 AY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVY 206 (337)
Q Consensus 130 ~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~ly 206 (337)
.. ..|.++++++...+.+... .+..|++|++|+ +++||
T Consensus 221 ~~~~~~I~~~~~dG~~~~~~~~~---------------------------------------~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 221 WGTPAKIKKGGLNGVDIYSLVTE---------------------------------------NIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp CSSSCCEEEEETTSCSCEEEECS---------------------------------------SCSCEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEeCCCCccEEEEEC---------------------------------------CCCceEEEEEEeCCCEEE
Confidence 75 3599999987666655431 467899999996 56799
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec---cccceeeEEEccCCCEEEEEeCCCCEEEEEEe-eCCCCC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---NLHFANGVELSADESFVIVAETMSSRVHRYYL-KGPKQG 282 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~-~g~~~~ 282 (337)
|+|.... +|+++|.++...+.+.. .+..|.||+++ ++.||++++.+++|.+++. +|..
T Consensus 262 ~aD~~~~--------------~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~-- 323 (400)
T 3p5b_L 262 WVDSKLH--------------SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD-- 323 (400)
T ss_dssp EEETTTT--------------EEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCC--
T ss_pred EEECCCC--------------EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc--
Confidence 9998643 89999988666655554 36789999994 4479999999999999994 3432
Q ss_pred ceeeeecCCCCCCCceeECC
Q psy4771 283 KSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 283 ~~~~~~~~~~g~Pdgi~~d~ 302 (337)
..++..++. .|.+|++..
T Consensus 324 -~~~i~~~~~-~p~~i~v~~ 341 (400)
T 3p5b_L 324 -VNLLAENLL-SPEDMVLFH 341 (400)
T ss_dssp -CEEEECSCS-CEEEEEEES
T ss_pred -eEEEecCCC-CCceEEEEe
Confidence 233333332 367776643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-14 Score=128.71 Aligned_cols=220 Identities=15% Similarity=0.218 Sum_probs=146.2
Q ss_pred CccEEEe--eCCeEEEEe-c------CcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCC-
Q psy4771 64 GPEAVVK--HKGDLYMGV-D------GGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF- 132 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~-~------~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~- 132 (337)
+|.++++ +++.+|+.. . +++|+.++..+.+.+..+ .....|.+++++++|+ +|+++...
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------~~~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI----------HNDLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE----------EESSCCCSEEEETTTTEEEEEETTTT
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE----------ecCCCcceEEECCCCCEEEEEecCCC
Confidence 6778887 345788443 3 678999987443333222 1224589999999995 99998754
Q ss_pred cEEEEEcCCCeEEEEecccccc--CCCCCCCCCceeeCCCCCcc---c---ccceeeeccccCC------CCCCCCccEE
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEI--DGAKPQIPNSVTVDSDGQTG---Q---TEQLISMDTEIDG------AKPQIPNSVT 198 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~--~g~~~~~P~~v~~~~~g~~~---~---~~~v~~~~~~~~~------~~~~~pn~v~ 198 (337)
.|..+|.++++........... ....+..|..++++++|+.+ . .+.|..++..-.. .....|++++
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 4999999888765544321000 00111236789999999965 2 2346665522100 0234589999
Q ss_pred EcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-----cccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 199 VDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-----NLHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 199 vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
++++|+ +|+++. ++.|+.+|..+++...... ....+.++++++||+.+|+++...+.|.
T Consensus 192 ~s~dg~~l~~~~~---------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 192 LDSEGKRLYTTNA---------------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp EETTTTEEEEECT---------------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred ECCCCCEEEEEcC---------------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 999987 787764 2478889988887644332 2346788999999999999999889999
Q ss_pred EEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 273 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 273 ~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
++++...+. ... .. . +.|.+++++++|+ +|++....
T Consensus 257 ~~d~~~~~~--~~~-~~-~-~~~~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 257 VVDTRNGNI--LAK-VA-A-PESLAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp EEETTTCCE--EEE-EE-C-SSCCCEEEETTTTEEEEEETTT
T ss_pred EEECCCCcE--EEE-EE-c-CCCceEEECCCCCEEEEEECCC
Confidence 999854321 111 11 2 2368899999998 89988543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=146.44 Aligned_cols=179 Identities=16% Similarity=0.250 Sum_probs=128.9
Q ss_pred ceeccCcccCccEEEee--CCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEE
Q psy4771 55 EKLFENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVAD 129 (337)
Q Consensus 55 ~~~~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad 129 (337)
+.+....+..|++|+++ ++.|| +|..+++|.+++. |+...+. + ...+..|.||++|+. |+||++|
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l-~---------~~~l~~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-F---------RENGSKPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-E---------ECTTCCEEEEEEETTTTEEEEEE
T ss_pred eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE-E---------eCCCCCcceEEEecCCCCEEEec
Confidence 33444467789999994 66788 9999999999987 4332221 1 133467999999986 7999999
Q ss_pred CCC--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEE
Q psy4771 130 AYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVY 206 (337)
Q Consensus 130 ~~~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~ly 206 (337)
++. .|.++++++...+.++.. .+..|++|++|+ +|+||
T Consensus 533 ~g~~~~I~~~~~dG~~~~~lv~~---------------------------------------~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 533 WGTPAKIKKGGLNGVDIYSLVTE---------------------------------------NIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp CSSSCEEEEEETTSCCEEEEECS---------------------------------------SCSCEEEEEEETTTTEEE
T ss_pred CCCCCeEEEEecCCCceEEEEeC---------------------------------------CCCCceEEEEecCCCeEE
Confidence 764 499999987766666531 467899999995 67899
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc---ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN---LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
|+|.... +|.+++.++...+.+... +..|.+|++. +++|||+|+..++|++++...++ .
T Consensus 574 waD~~~~--------------~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~--~ 635 (791)
T 3m0c_C 574 WVDSKLH--------------SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS--D 635 (791)
T ss_dssp EEETTTT--------------EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC--C
T ss_pred EEeCCCC--------------cEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc--c
Confidence 9997643 888999876666555543 5677788774 45899999999999999853221 2
Q ss_pred eeeeecCCCCCCCceeEC
Q psy4771 284 SEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 284 ~~~~~~~~~g~Pdgi~~d 301 (337)
..++..++. .|.+|++.
T Consensus 636 ~~~l~~~l~-~P~~i~v~ 652 (791)
T 3m0c_C 636 VNLLAENLL-SPEDMVLF 652 (791)
T ss_dssp CEEEECSCS-CCCCEEEE
T ss_pred eEEeecCCC-CceeEeee
Confidence 334444333 37777764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=138.13 Aligned_cols=186 Identities=12% Similarity=0.143 Sum_probs=125.5
Q ss_pred cccCccEEEe-eCCeEE-EEecC----cEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC
Q psy4771 61 EIHGPEAVVK-HKGDLY-MGVDG----GHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF 132 (337)
Q Consensus 61 ~~~~P~~i~~-~~g~ly-~d~~~----g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~ 132 (337)
.+..|.+|++ .+|.|| ++..+ ..++.++. +....-.. ...+..|.|+++|+ +|+|||+|...
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~----------~~~~~~P~giavd~~~G~lyv~d~~~ 249 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS----------LCNARGAKTCAVHPQNGKIYYTRYHH 249 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE----------EEECSSBCCCEECTTTCCEEECBTTC
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc----------ccccCCCCEEEEeCCCCeEEEEECCC
Confidence 3457999999 566688 66533 23566654 21110000 12357799999999 78999999775
Q ss_pred c-EEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCC-cc----cccceeeeccccC------------------
Q psy4771 133 G-LYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQ-TG----QTEQLISMDTEID------------------ 187 (337)
Q Consensus 133 g-v~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~-~~----~~~~v~~~~~~~~------------------ 187 (337)
+ |+++|++++.+ ..+... ... ..+.+++++++|+ ++ ....|..++....
T Consensus 250 ~~V~~~d~~~g~~~~~~~~~----~~~--~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g 323 (433)
T 4hw6_A 250 AMISSYDPATGTLTEEEVMM----DTK--GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPG 323 (433)
T ss_dssp SEEEEECTTTCCEEEEEEEC----SCC--SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCC
T ss_pred CEEEEEECCCCeEEEEEecc----CCC--CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCc
Confidence 4 99999987776 444431 111 1355699999999 44 2345655441100
Q ss_pred -------CCCCCCCccEEE---------cCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-------
Q psy4771 188 -------GAKPQIPNSVTV---------DSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA------- 244 (337)
Q Consensus 188 -------~~~~~~pn~v~v---------d~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~------- 244 (337)
...+..|+++++ |++|+|||+|.... +|.+++++ |.+..+..
T Consensus 324 ~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~--------------~I~~~~~~-G~v~t~~G~g~~~~~ 388 (433)
T 4hw6_A 324 WVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH--------------TVRVLTPE-GRVTTYAGRGNSREW 388 (433)
T ss_dssp CBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT--------------EEEEECTT-SEEEEEECCCTTCSS
T ss_pred cCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC--------------EEEEECCC-CCEEEEEeCCCCCcc
Confidence 013678999999 89999999998743 67777763 45444331
Q ss_pred -----------cccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 245 -----------NLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 245 -----------~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|..|.|||+++++..|||+|+.+++|.+++++
T Consensus 389 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 389 GYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 256799999994444899999999999999874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-14 Score=131.37 Aligned_cols=185 Identities=15% Similarity=0.188 Sum_probs=131.2
Q ss_pred cCccEEEe-eCCeEE-EEecCcEEEEEeCCceeEE--EecCccccCccccCccCCcceEEECCCCcEEEEEC--CCcEEE
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPV--VKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA--YFGLYK 136 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~--~~gv~~ 136 (337)
..|.++++ .++.+| ++..+++|.++|..+.+.. ...+.. ......|.+|++ .+++|||++. ...|..
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEE
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc------cccCCCcceEEE-ECCEEEEEcCCCCCEEEE
Confidence 57999999 788999 5548899999998443322 222210 012237999999 5679999986 245999
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cc----------cceeeecccc-------CCCCCCCCc
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QT----------EQLISMDTEI-------DGAKPQIPN 195 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~----------~~v~~~~~~~-------~~~~~~~pn 195 (337)
+|++++++..... . +. .|.+++++++|+++ .. +.|..++... .-.....|+
T Consensus 157 iD~~t~~~~~~i~----~-g~---~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 157 IDTETDKVVDELT----I-GI---QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS 228 (328)
T ss_dssp EETTTTEEEEEEE----C-SS---CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred EECCCCeEEEEEE----c-CC---CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence 9999887665543 1 22 48999999999987 11 4577776321 101124799
Q ss_pred cEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE--Eec-cccceeeEEEccCCCEEEEEe----CC
Q psy4771 196 SVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV--LIA-NLHFANGVELSADESFVIVAE----TM 267 (337)
Q Consensus 196 ~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~--~~~-~~~~p~gia~~~dg~~lyva~----~~ 267 (337)
+++++++|+ +|+++. .|+++|++++++.. ... +...|.||+++|+++.|||++ ..
T Consensus 229 ~la~~~d~~~lyv~~~-----------------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~ 291 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN-----------------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ 291 (328)
T ss_dssp EEEECTTSCEEEEESS-----------------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS
T ss_pred eEEEecCCCEEEEEcc-----------------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc
Confidence 999999765 888763 68889988776521 111 246899999999777899999 78
Q ss_pred CCEEEEEEeeCC
Q psy4771 268 SSRVHRYYLKGP 279 (337)
Q Consensus 268 ~~~I~~~~~~g~ 279 (337)
.++|.+|+.+|.
T Consensus 292 ~~~V~v~d~~g~ 303 (328)
T 3dsm_A 292 QGIVYRYSPQGK 303 (328)
T ss_dssp EEEEEEECTTCC
T ss_pred CCEEEEECCCCC
Confidence 899999998743
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=127.94 Aligned_cols=215 Identities=12% Similarity=0.144 Sum_probs=137.5
Q ss_pred CcccCccEEEe-eCCeEE-EEec-----CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEE
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVD-----GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVAD 129 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~-----~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad 129 (337)
+.+..|.+|++ .++.|| +|.. .++|++++. ++......++... ......|+++++|++ |.+||+|
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-----~~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-----TLSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-----SCTTCCCCEEEEETTTTEEEEEE
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-----cccccccceEEEecCCCEEEEEc
Confidence 34568999999 578899 7876 589999996 4433222232110 122356899999975 6999999
Q ss_pred C---C-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCCCCCCCCccEEEcC
Q psy4771 130 A---Y-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDGAKPQIPNSVTVDS 201 (337)
Q Consensus 130 ~---~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~~~~~~pn~v~vd~ 201 (337)
. . ++|+++|+++++..++.... .+ ..|....+..+|+.+ ..+.+.. -...+|+|++++
T Consensus 139 ~~~~~~~~i~v~d~~~g~~~r~~~~~---~~---~~~~~~~~~~~g~~~~~~~~~g~~~~--------~~~~~~gia~s~ 204 (343)
T 2qe8_A 139 PAPDDKAALIRVDLQTGLAARVLQGY---PG---IAPEDIDLVIDGVPVQIGQPDGTVIR--------PHLGVNGIVLDA 204 (343)
T ss_dssp CCSGGGCEEEEEETTTCCEEEECTTC---TT---TSCCSCCCEETTEECBEECTTSCEEC--------CCCCEEEEEECT
T ss_pred CccCCCCeEEEEECCCCCEEEEecCC---Cc---ccccccceeECCEEEEeccCCCceec--------eecccceeEecc
Confidence 7 4 46999999888776654310 00 012212222233222 0111100 113589999999
Q ss_pred CCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC---CCe---------eEEEeccccceeeEEEccCCCEEEEEeCCC
Q psy4771 202 DGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK---TKK---------NKVLIANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 202 ~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~---~~~---------~~~~~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
||+ ||+++.... +|++++.+ .+. +. .......|+||+++++| .|||++...
T Consensus 205 dg~~ly~~~~~~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G-~l~va~~~~ 268 (343)
T 2qe8_A 205 ENEWLYLSPMHST--------------SMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDH-NIYVGDLAH 268 (343)
T ss_dssp TSCEEEEEESSCS--------------EEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTC-CEEEEEGGG
T ss_pred CCCEEEEEeCCCC--------------eEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCC-CEEEEccCC
Confidence 995 999987633 77777632 110 11 11223479999999998 599999999
Q ss_pred CEEEEEEe-eCCCCCceeeeecCC-CCCCCceeECCCCCEEEEecCC
Q psy4771 269 SRVHRYYL-KGPKQGKSEVFIDGL-PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 269 ~~I~~~~~-~g~~~~~~~~~~~~~-~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++|.+++. +| +...+.... -..|++++++++|++||+....
T Consensus 269 ~~V~~~d~~~G----~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 269 SAIGVITSADR----AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp TEEEEEETTTT----EEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CeEEEEECCCC----CEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 99999997 43 233443311 2359999999999999998644
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-13 Score=121.35 Aligned_cols=182 Identities=10% Similarity=0.131 Sum_probs=127.5
Q ss_pred cCccEEEe-eCCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEEC--------
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA-------- 130 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~-------- 130 (337)
..|.++++ .+|.+| ++..+++|.+++. ++...+... . ......+|+++++|++|++|++|.
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~-----~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~ 141 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS--F-----EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPE 141 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE--E-----TTEECCCCCCEEECTTSCEEEEECSHHHHCGG
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec--c-----CCCCCCCCCCEEECCCCCEEEECCcccccccc
Confidence 46888998 678888 5556689999986 444333211 0 012346789999999999999874
Q ss_pred ----------CCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccC---------
Q psy4771 131 ----------YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEID--------- 187 (337)
Q Consensus 131 ----------~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~--------- 187 (337)
..+|++++++ +++..+... . ..|.+++++++|+++ ..+.|..++...+
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~----~----~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 142 EGYGGEMELPGRWVFRLAPD-GTLSAPIRD----R----VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp GSSCCCCCSSSCEEEEECTT-SCEEEEECC----C----SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred ccccccccCCCcEEEEECCC-CCEEEeecC----C----CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE
Confidence 1369999987 666655431 1 148899999999986 2245555442111
Q ss_pred -CCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEE-ccCCCEEEEEe
Q psy4771 188 -GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVEL-SADESFVIVAE 265 (337)
Q Consensus 188 -~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~-~~dg~~lyva~ 265 (337)
......|+++++|++|++|+++. ++|.+||+++.....+..... |..+++ ++|++.||++.
T Consensus 213 ~~~~~~~p~~i~~d~~G~l~v~~~----------------~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGGLIWASAG----------------DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp ECCSSSCCCSEEEBTTSCEEEEET----------------TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEE
T ss_pred eeCCCCCCCeEEECCCCCEEEEcC----------------CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEc
Confidence 11345789999999999999882 289999998554444443334 899999 58999999998
Q ss_pred CCCCEEEEEEeeCC
Q psy4771 266 TMSSRVHRYYLKGP 279 (337)
Q Consensus 266 ~~~~~I~~~~~~g~ 279 (337)
. +.+++++++..
T Consensus 276 ~--~~l~~~~~~~~ 287 (296)
T 3e5z_A 276 S--TEFWSIETNVR 287 (296)
T ss_dssp T--TEEEEEECSCC
T ss_pred C--CeEEEEEcccc
Confidence 5 58999998654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-13 Score=122.13 Aligned_cols=228 Identities=13% Similarity=0.125 Sum_probs=141.9
Q ss_pred ccCccEEEe-eCCeEE-EEec--CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCc-
Q psy4771 62 IHGPEAVVK-HKGDLY-MGVD--GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFG- 133 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly-~d~~--~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~g- 133 (337)
...|.++++ .+|.|| ++.. ++.|+.|+. ++.+.+..+. .....|.+++++++|+ ||+++...+
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~---------~~~~~p~~~a~spdg~~l~~~~~~~~~ 109 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV---------APGTPPAYVAVDEARQLVYSANYHKGT 109 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE---------EESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee---------cCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence 357999999 677788 4443 578888764 4444333211 2246799999999995 888875444
Q ss_pred EEEEEcC-CCeEEEEeccccccCCCC------CCCCCceeeCCCCCcc----cccceeeeccccCC----------CCCC
Q psy4771 134 LYKVNVT-TGQTEQLISMDTEIDGAK------PQIPNSVTVDSDGQTG----QTEQLISMDTEIDG----------AKPQ 192 (337)
Q Consensus 134 v~~vd~~-~g~~~~l~~~~~~~~g~~------~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~----------~~~~ 192 (337)
+..++.+ ++....+... ...+.. ...|+.++++++|+++ ..+.|..++....+ ....
T Consensus 110 v~v~~~~~~g~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTV--QHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEECTTSCEEEEEEE--ECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEeCCCCCeeeccee--ecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 6666653 4555444321 111110 0135679999999965 23445444422111 1234
Q ss_pred CCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--c-------ccceeeEEEccCCCEEE
Q psy4771 193 IPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--N-------LHFANGVELSADESFVI 262 (337)
Q Consensus 193 ~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~-------~~~p~gia~~~dg~~ly 262 (337)
.|+++++++||+ +|+++.... .-.++.++..+++.+.+.. . ...|.+++++|||++||
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSS------------QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTT------------EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred CCceEEECCCCCEEEEEeCCCC------------EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 688899999998 898876532 1145555554565433221 1 14588999999999999
Q ss_pred EEeCCCCEEEEEEeeCC-CCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 263 VAETMSSRVHRYYLKGP-KQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 263 va~~~~~~I~~~~~~g~-~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+++...++|.+|+++.. .......+.. ....|.++++++||+ +|++....
T Consensus 256 v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp EEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEETTT
T ss_pred EEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEEEEEcCC
Confidence 99998999999998632 1111111111 123589999999997 88887653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=119.46 Aligned_cols=222 Identities=14% Similarity=0.137 Sum_probs=148.8
Q ss_pred CccEEEe-eC-CeEE-EEecCcEEEEEeCCceeEEE--ecCccccCccccCccCCcceEEECCCC-cEEEEECC--CcEE
Q psy4771 64 GPEAVVK-HK-GDLY-MGVDGGHILKLSGGKLVPVV--KLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY--FGLY 135 (337)
Q Consensus 64 ~P~~i~~-~~-g~ly-~d~~~g~I~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~--~gv~ 135 (337)
.|.++++ .+ +.+| ++..++.|..++..+.+.+. ..+.... ........|.+++++++| .+|+++.. ..|+
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--TEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--ccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 5788888 44 4588 67778999999974332222 2211100 000111247899999998 58998743 3499
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-------cCC---CCCCCCccEEEcC
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE-------IDG---AKPQIPNSVTVDS 201 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~-------~~~---~~~~~pn~v~vd~ 201 (337)
.+|.++++...... ..+. .|..++++++|+.+ ..+.+..++.. +.. .....++++++++
T Consensus 168 ~~d~~~~~~~~~~~----~~~~---~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQ----NTGK---MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEETTTTEEEEEEC----CCCT---TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred EEcCCCCceEEEec----CCCC---ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 99998887765543 1222 37889999999976 33455554411 000 1233567899999
Q ss_pred CCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC
Q psy4771 202 DGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK 280 (337)
Q Consensus 202 ~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~ 280 (337)
+|+ +|+++.. .+.|+.+|..+++...... ...+.++++++||+++|+++...++|.+++.+..
T Consensus 241 dg~~l~~~~~~--------------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~- 304 (353)
T 3vgz_A 241 ARQRAFITDSK--------------AAEVLVVDTRNGNILAKVA-APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY- 304 (353)
T ss_dssp TTTEEEEEESS--------------SSEEEEEETTTCCEEEEEE-CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT-
T ss_pred CCCEEEEEeCC--------------CCEEEEEECCCCcEEEEEE-cCCCceEEECCCCCEEEEEECCCCeEEEEECCCC-
Confidence 987 8888754 3489999998887644333 3457889999999999999999999999997543
Q ss_pred CCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 281 QGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 281 ~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+...... .+..|.++++++||+ +||+....
T Consensus 305 --~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 305 --KVVKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp --EEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred --eEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 2211122 334689999999998 99998765
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-12 Score=116.60 Aligned_cols=247 Identities=12% Similarity=0.110 Sum_probs=155.9
Q ss_pred cCceeccCcccCccEEEe-eCCeEEEEec-CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC----Cc
Q psy4771 53 NAEKLFENEIHGPEAVVK-HKGDLYMGVD-GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN----GA 124 (337)
Q Consensus 53 ~~~~~~~g~~~~P~~i~~-~~g~ly~d~~-~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G~ 124 (337)
.++.+++| +..|.+|++ .+|.+|+... .|+|++++. ++...+..+..- .....+.|+||+++|+ |.
T Consensus 23 ~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v-----~~~g~~GllGia~~Pdf~~~g~ 96 (347)
T 3das_A 23 VLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV-----SPSGEGGLLGIALSPDYASDHM 96 (347)
T ss_dssp EEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-----CCBTTBSEEEEEECTTHHHHCE
T ss_pred eeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce-----eecCCCCceeeEeccccccCCE
Confidence 45666665 679999999 7888996666 899999986 333333322110 0122356999999984 89
Q ss_pred EEEEEC---CCcEEEEEcCCC--------eEEEEeccccccCCCCCCCCCceeeCCCCCcc-c----------------c
Q psy4771 125 LHVADA---YFGLYKVNVTTG--------QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-Q----------------T 176 (337)
Q Consensus 125 lyVad~---~~gv~~vd~~~g--------~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-~----------------~ 176 (337)
|||+.+ .+.|.++..+++ ..+.+... ...........|++++||+++ + .
T Consensus 97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~---~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~ 173 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRG---IPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLG 173 (347)
T ss_dssp EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEE---ECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCST
T ss_pred EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEc---CCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCC
Confidence 999853 245888876542 12333321 111111246779999999987 1 2
Q ss_pred cceeeeccccC--------C-----CCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC------C
Q psy4771 177 EQLISMDTEID--------G-----AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT------K 237 (337)
Q Consensus 177 ~~v~~~~~~~~--------~-----~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~------~ 237 (337)
+.|..+..+.. + ..+..|.+++++++|+||++|.+.+..+-+..+ ..|.-|-+-... +
T Consensus 174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i---~~G~nyGwP~~~g~~~~~~ 250 (347)
T 3das_A 174 GKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAI---KPGDNYGWPEAEGKGGGSG 250 (347)
T ss_dssp TCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEE---CTTCBCCTTTCCSSCCCTT
T ss_pred CEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEE---cCCCEecCCcccCCCCCcc
Confidence 46666653322 1 145679999999999999999876431111111 111111000000 0
Q ss_pred e---eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC-CCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 238 K---NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK-QGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 238 ~---~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~-~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
. +..+......|.||++. +| .+|+++....+|+++.+++.. .+..+.|..+..+.|.++++++||.|||+....
T Consensus 251 ~~~P~~~~~~~~~ap~G~~~~-~g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~ 328 (347)
T 3das_A 251 FHDPVAQWSTDEASPSGIAYA-EG-SVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNT 328 (347)
T ss_dssp CCCCSEEECTTTCCEEEEEEE-TT-EEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTT
T ss_pred ccCCcEecCCCCCCCcceEEE-cC-ceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCC
Confidence 0 00111112478999998 44 699999999999999998653 344566666556789999999999999998755
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-13 Score=121.49 Aligned_cols=182 Identities=16% Similarity=0.142 Sum_probs=124.3
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC---------
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY--------- 131 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~--------- 131 (337)
.|.++++ .+|.+|+.. +++|++++. ++.+.+..... .....+|+++++|++|++|+++..
T Consensus 55 ~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~-------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~ 126 (297)
T 3g4e_A 55 PVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDN-------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE 126 (297)
T ss_dssp CEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCT-------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCC
T ss_pred ceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCC-------CCCCCCCCCEEECCCCCEEEecCCccccccccc
Confidence 5778888 677888666 567999986 44444432211 123467999999999999999732
Q ss_pred ---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEE
Q psy4771 132 ---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYW 207 (337)
Q Consensus 132 ---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyv 207 (337)
.+|++++++ ++...+.. .+..||++++++||+ +|+
T Consensus 127 ~~~~~l~~~d~~-g~~~~~~~----------------------------------------~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 127 RHQGALYSLFPD-HHVKKYFD----------------------------------------QVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp TTCEEEEEECTT-SCEEEEEE----------------------------------------EESBEEEEEECTTSCEEEE
T ss_pred CCCcEEEEEECC-CCEEEEee----------------------------------------ccccccceEEcCCCCEEEE
Confidence 248889876 44444432 244689999999996 999
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcC--CCCeeE---EEe---ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNP--KTKKNK---VLI---ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~--~~~~~~---~~~---~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
++... ++|++++. .+|+.. .+. .....|.|++++++| .|||+....++|.+|+++.+
T Consensus 166 ~~~~~--------------~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 166 IDSLS--------------YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEGGG--------------TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTC
T ss_pred ecCCC--------------CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCc
Confidence 98753 36766653 555432 222 123579999999999 59999999999999998622
Q ss_pred CCCceeeeecCCC-CCCCceeEC-CCCC-EEEEecCC
Q psy4771 280 KQGKSEVFIDGLP-GLPDNVKRD-SKGN-FLVSLVCP 313 (337)
Q Consensus 280 ~~~~~~~~~~~~~-g~Pdgi~~d-~dG~-l~va~~~~ 313 (337)
+ ....+. .| ..|.++++. ++++ |||+....
T Consensus 231 ~---~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 231 K---RLQTVK-LPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp C---EEEEEE-CSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred e---EEEEEE-CCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 1 211122 23 358899997 6664 99999755
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-13 Score=120.42 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=124.4
Q ss_pred CccEEEe-eCCeEE-EEecC--cEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEE
Q psy4771 64 GPEAVVK-HKGDLY-MGVDG--GHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYK 136 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~--g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~ 136 (337)
.|.++++ .+|.+| ++..+ .+|++++. ++...+... .....|.|++..+++++|++|... .|++
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~----------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~ 142 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL----------PDAIFLNGITPLSDTQYLTADSYRGAIWL 142 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC----------TTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC----------CCccccCcccccCCCcEEEEECCCCeEEE
Confidence 5889998 677888 66543 36999874 455444322 123568899988888999999754 4999
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCCCcc
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYK 215 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~~~~ 215 (337)
+|+.+++.+............ ....+..||+| +++| .||++|...+
T Consensus 143 ~d~~~~~~~v~~~~~~~~~~~-----------------------------~~~~~~~pngi--s~dg~~lyv~d~~~~-- 189 (306)
T 2p4o_A 143 IDVVQPSGSIWLEHPMLARSN-----------------------------SESVFPAANGL--KRFGNFLYVSNTEKM-- 189 (306)
T ss_dssp EETTTTEEEEEEECGGGSCSS-----------------------------TTCCSCSEEEE--EEETTEEEEEETTTT--
T ss_pred EeCCCCcEeEEEECCcccccc-----------------------------ccCCCCcCCCc--CcCCCEEEEEeCCCC--
Confidence 998766433321100000000 00135679998 6665 6999998643
Q ss_pred CceeeeeecCCccEEEEcCCC-Cee---EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-C
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKT-KKN---KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-G 290 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~-~~~---~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~ 290 (337)
+|++|+.+. ++. +.+ ..+..|.||++++|| .|||++...++|.+|+.+|. ...... .
T Consensus 190 ------------~I~~~~~~~~g~~~~~~~~-~~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~----~~~~~~~~ 251 (306)
T 2p4o_A 190 ------------LLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRS----TTIIAQAE 251 (306)
T ss_dssp ------------EEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCC----EEEEECGG
T ss_pred ------------EEEEEEeCCCCCCCccEEE-eccCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCC----EEEEeecc
Confidence 788888764 332 222 234689999999999 59999999999999987542 211111 1
Q ss_pred CC-CCCCceeEC---CCC-CEEEEecCC
Q psy4771 291 LP-GLPDNVKRD---SKG-NFLVSLVCP 313 (337)
Q Consensus 291 ~~-g~Pdgi~~d---~dG-~l~va~~~~ 313 (337)
.+ ..|.+++++ ++| +|||+....
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 22 359999998 675 699999765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-13 Score=119.13 Aligned_cols=184 Identities=18% Similarity=0.182 Sum_probs=124.6
Q ss_pred cCccEEEe-eC-CeEEEEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-------
Q psy4771 63 HGPEAVVK-HK-GDLYMGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF------- 132 (337)
Q Consensus 63 ~~P~~i~~-~~-g~ly~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~------- 132 (337)
..|.++++ .+ +.+|+....++|++++.. +...+. .... .......|.++++|++|++||++...
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~--~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIA--KKDS----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECC--SBCT----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEE--eccC----CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 46888988 56 899955555579999874 322110 1100 01223568999999999999998643
Q ss_pred ---------cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc---
Q psy4771 133 ---------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD--- 200 (337)
Q Consensus 133 ---------gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd--- 200 (337)
+|++++++ ++...+.. ....|++++++
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~----------------------------------------~~~~~~~i~~~~~~ 183 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQVDT----------------------------------------AFQFPNGIAVRHMN 183 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEEEE----------------------------------------EESSEEEEEEEECT
T ss_pred cccccCCCCeEEEECCC-CCEEEecc----------------------------------------CCCCcceEEEeccc
Confidence 58999887 65554432 13457899999
Q ss_pred -CCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCC-CCeeE---EEe--c-cc-cceeeEEEccCCCEEEEEeCCCCE
Q psy4771 201 -SDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TKKNK---VLI--A-NL-HFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 201 -~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~~~~---~~~--~-~~-~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
++| .+|+++... ++|+++|.+ +++.. ... . .. ..|++++++++| .|||++...++
T Consensus 184 d~dg~~l~v~~~~~--------------~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~ 248 (314)
T 1pjx_A 184 DGRPYQLIVAETPT--------------KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSH 248 (314)
T ss_dssp TSCEEEEEEEETTT--------------TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTE
T ss_pred CCCCCEEEEEECCC--------------CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCE
Confidence 998 599998653 367777754 34321 111 1 11 579999999999 59999988899
Q ss_pred EEEEEee-CCCCCceeeeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 271 VHRYYLK-GPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 271 I~~~~~~-g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
|.+|+.+ +... ..+.. ....|.+++++++|+ +|++...
T Consensus 249 i~~~d~~~g~~~---~~~~~-~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 249 IEVFGPDGGQPK---MRIRC-PFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp EEEECTTCBSCS---EEEEC-SSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCcEe---EEEeC-CCCCceeEEECCCCCEEEEEeCC
Confidence 9999976 3221 22221 114689999999998 9999865
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=118.55 Aligned_cols=178 Identities=12% Similarity=0.162 Sum_probs=124.8
Q ss_pred CccEEEe-eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEEC----------
Q psy4771 64 GPEAVVK-HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA---------- 130 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~---------- 130 (337)
.|.++++ .+|.+| ++..+++|.+++. ++...+.... .......|++++++++|++|++|.
T Consensus 87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~-------~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~ 159 (305)
T 3dr2_A 87 FTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRY-------AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG 159 (305)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEE-------TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred ccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEecc-------CCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence 5788888 678899 5556688999987 4443332110 012346799999999999999873
Q ss_pred --------CCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cc------cceeeeccc-------
Q psy4771 131 --------YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QT------EQLISMDTE------- 185 (337)
Q Consensus 131 --------~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~------~~v~~~~~~------- 185 (337)
..+|+++|+++++++.+. . . ..|+++++++||+.+ +. ..|..++..
T Consensus 160 ~~~~~~~~~~~v~~~d~~~g~~~~~~-~---~-----~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~ 230 (305)
T 3dr2_A 160 CPADPELAHHSVYRLPPDGSPLQRMA-D---L-----DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDR 230 (305)
T ss_dssp CCCCCSSSCEEEEEECSSSCCCEEEE-E---E-----SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEE
T ss_pred cccccccCCCeEEEEcCCCCcEEEEe-c---C-----CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCC
Confidence 135999999888776654 1 1 148899999999854 22 456555422
Q ss_pred --cCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEE
Q psy4771 186 --IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIV 263 (337)
Q Consensus 186 --~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv 263 (337)
+.......|+++++|++|+||+++.. .|++|++++.....+... ..+..+++++|++.||+
T Consensus 231 ~~~~~~~~~~pdgi~~d~~G~lwv~~~~----------------gv~~~~~~g~~~~~~~~~-~~~~~~~f~~d~~~L~i 293 (305)
T 3dr2_A 231 RHFASVPDGLPDGFCVDRGGWLWSSSGT----------------GVCVFDSDGQLLGHIPTP-GTASNCTFDQAQQRLFI 293 (305)
T ss_dssp EEEECCSSSCCCSEEECTTSCEEECCSS----------------EEEEECTTSCEEEEEECS-SCCCEEEECTTSCEEEE
T ss_pred eEEEECCCCCCCeEEECCCCCEEEecCC----------------cEEEECCCCCEEEEEECC-CceeEEEEeCCCCEEEE
Confidence 11112457899999999999998732 699999975554444322 36889999999999999
Q ss_pred EeCCCCEEEEEEe
Q psy4771 264 AETMSSRVHRYYL 276 (337)
Q Consensus 264 a~~~~~~I~~~~~ 276 (337)
+.. +.++++++
T Consensus 294 t~~--~~l~~~~~ 304 (305)
T 3dr2_A 294 TGG--PCLWMLPL 304 (305)
T ss_dssp EET--TEEEEEEC
T ss_pred EcC--CeEEEEEC
Confidence 985 58888874
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-13 Score=127.31 Aligned_cols=168 Identities=10% Similarity=0.112 Sum_probs=114.9
Q ss_pred ccCccEEEe-e-CCeEE-EEecCcEEEEEeCC-------cee--------------EEEecCccccCccccCccCCcceE
Q psy4771 62 IHGPEAVVK-H-KGDLY-MGVDGGHILKLSGG-------KLV--------------PVVKLGKDCYGFKYEQQCGRPLGI 117 (337)
Q Consensus 62 ~~~P~~i~~-~-~g~ly-~d~~~g~I~~~~~~-------~~~--------------~~~~~g~~~~~~~~~~~~~~P~Gl 117 (337)
+.+|.++++ . ++.|| ++..+++|+|++.. ... .+... .....|.+|
T Consensus 246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~----------~~~~~p~~i 315 (496)
T 3kya_A 246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI----------ADPSWEFQI 315 (496)
T ss_dssp ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC----------SSSSCCEEE
T ss_pred CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec----------CCCCCceEE
Confidence 347999999 3 68888 89999999999864 111 11111 223568999
Q ss_pred EECCCCc-EEEEECC-CcEEEEEcCC--CeE---EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 118 KFDKNGA-LHVADAY-FGLYKVNVTT--GQT---EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 118 ~~d~~G~-lyVad~~-~gv~~vd~~~--g~~---~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+++++|+ |||+|.. +.|++++.++ +.+ ..++... ...|.. .+ ......
T Consensus 316 a~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~----DG--------------------~~~~a~ 370 (496)
T 3kya_A 316 FIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYR----DD--------------------VGTEAR 370 (496)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCB----CC--------------------BGGGCB
T ss_pred EEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCccc----CC--------------------cccccc
Confidence 9999997 8999976 4599987653 333 3444320 011110 00 011235
Q ss_pred CCCCc-cEEEc-------CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec------------------
Q psy4771 191 PQIPN-SVTVD-------SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA------------------ 244 (337)
Q Consensus 191 ~~~pn-~v~vd-------~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~------------------ 244 (337)
++.|. +++++ ++|+|||+|.... +|.+++++ |.+..++.
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~--------------rIr~i~~~-G~v~TiaG~g~~~~~~~~~~~G~~dG 435 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF--------------CVRKVTPE-GIVSTYAGRGASTSLADGNQWGTDDG 435 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGT--------------EEEEECTT-CBEEEEEESCTTHHHHHSCSCCCCCE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCC--------------EEEEEeCC-CCEEEEecccccccccCccccccCCC
Confidence 88999 78887 6789999998743 67777753 45444431
Q ss_pred ------cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 245 ------NLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 245 ------~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
.|..|.|||+++++..|||+|+.++||+++++++.
T Consensus 436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 25679999999974489999999999999999764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-12 Score=115.82 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=119.3
Q ss_pred cCCcceEEECCCCcEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeee
Q psy4771 111 CGRPLGIKFDKNGALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISM 182 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~ 182 (337)
...|.+++++++|+||+++.. ..|+.++.++++.+.+.... ..+. .|..+++++||+.+ ..+.+..+
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~---~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV--APGT---PPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE--EESC---CCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee--cCCC---CCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 367999999999999998753 35888888777766554311 1122 48999999999966 12334443
Q ss_pred ccccCCC------------------CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCC-CCeeEEEe
Q psy4771 183 DTEIDGA------------------KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TKKNKVLI 243 (337)
Q Consensus 183 ~~~~~~~------------------~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~~~~~~~ 243 (337)
+...++. ....+++++++++|++|+++...+ .|+.|+.+ +++.....
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~--------------~v~~~~~~~~g~~~~~~ 179 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD--------------KVYVYNVSDAGQLSEQS 179 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT--------------EEEEEEECTTSCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC--------------EEEEEEECCCCcEEEee
Confidence 3211110 112467899999999999887532 55555544 45443221
Q ss_pred ----ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC--CCCceeeeecCCC------CCCCceeECCCCC-EEEEe
Q psy4771 244 ----ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--KQGKSEVFIDGLP------GLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 244 ----~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--~~~~~~~~~~~~~------g~Pdgi~~d~dG~-l~va~ 310 (337)
.....|++++++|||++||+++...++|.+++++.. .......+.. .+ ..|.++++++||+ +|++.
T Consensus 180 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~ 258 (347)
T 3hfq_A 180 VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSN 258 (347)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-cCCCCCCCCcceeEEECCCCCEEEEEe
Confidence 223478999999999999999999999999998742 1111111111 22 2367799999998 78887
Q ss_pred cC
Q psy4771 311 VC 312 (337)
Q Consensus 311 ~~ 312 (337)
..
T Consensus 259 ~~ 260 (347)
T 3hfq_A 259 RG 260 (347)
T ss_dssp ET
T ss_pred CC
Confidence 54
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-11 Score=111.49 Aligned_cols=208 Identities=13% Similarity=0.139 Sum_probs=136.6
Q ss_pred eCCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCC-cEEEEEcCCCeE-
Q psy4771 71 HKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF-GLYKVNVTTGQT- 144 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~-gv~~vd~~~g~~- 144 (337)
..+.+| ++..+++|..|+.. +.......+ ...| +++++++|+ +|+++... .|+.+|.++++.
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLG-----------YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEEEECC-----------CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeeeEEcc-----------CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 356778 88888999999863 332222211 2346 999999995 89998643 599999988875
Q ss_pred EEEeccccccCCCCCCCCCc-eeeCCCCCcc---ccc----ceeeeccccCC-----CCCCCCccEEEcCCCc-EEEEcC
Q psy4771 145 EQLISMDTEIDGAKPQIPNS-VTVDSDGQTG---QTE----QLISMDTEIDG-----AKPQIPNSVTVDSDGM-VYWSDS 210 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~-v~~~~~g~~~---~~~----~v~~~~~~~~~-----~~~~~pn~v~vd~~G~-lyvtd~ 210 (337)
..... .+. .|.. ++++++|+.+ ..+ .|..++..... .....|++++++++|+ +|+++.
T Consensus 76 ~~~~~-----~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 76 VVAIQ-----EGQ---SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp EEEEE-----ECS---SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE
T ss_pred EEecc-----cCC---CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec
Confidence 33322 111 3788 9999999976 222 45555422110 1235679999999996 998876
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCee----EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc-ee
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKN----KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK-SE 285 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~----~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~-~~ 285 (337)
... . .-.+|.++.. +.. .........|.+++++|||+++|++....++|.+++++..+... ..
T Consensus 148 ~~~---~--------~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 215 (331)
T 3u4y_A 148 SSA---N--------TVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN 215 (331)
T ss_dssp TTT---T--------EEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred CCC---c--------eEEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence 522 0 0134444432 222 12223445799999999999999999999999999987543311 22
Q ss_pred eeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 286 VFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 286 ~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
.+. ....|.++++++||+ +|++...
T Consensus 216 ~~~--~~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 216 AVG--TNNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp EEE--CSSCCCCEEECTTSSEEEEECSS
T ss_pred ecc--CCCCCceEEECCCCCEEEEEEcC
Confidence 222 235689999999998 8887653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=137.38 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=121.5
Q ss_pred CcccCccEEEe--eCCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCC--
Q psy4771 60 NEIHGPEAVVK--HKGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYF-- 132 (337)
Q Consensus 60 g~~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~-- 132 (337)
..+..|++|++ .++.|| ++..+++|.+++.. +.... .+ ......|.||++|+. |+||++|...
T Consensus 450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~-l~---------~~~~~~P~giavDp~~g~ly~td~~~~~ 519 (699)
T 1n7d_A 450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT-LF---------REQGSKPRAIVVDPVHGFMYWTDWGTPA 519 (699)
T ss_dssp SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEE-EC---------CCSSCCCCCEECCSSSSCCEECCCSSSC
T ss_pred CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEE-EE---------eCCCCCcceEEEccCCCcEEEcccCCCC
Confidence 34567999998 367777 88889999999873 32221 11 123467999999985 6999999753
Q ss_pred cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEcCC
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSS 211 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd~~ 211 (337)
.|.++++++...+.++. ..+..||+|++|++ ++|||+|..
T Consensus 520 ~I~~~~~dG~~~~~l~~---------------------------------------~~l~~PnGlavd~~~~~LY~aD~~ 560 (699)
T 1n7d_A 520 KIKKGGLNGVDIYSLVT---------------------------------------ENIQWPNGITLDLLSGRLYWVDSK 560 (699)
T ss_dssp CEEBCCSSSCCCCEESC---------------------------------------SSCSSCCCEEECTTTCCEEEEETT
T ss_pred eEEEEeCCCCCeeEEEe---------------------------------------CCCCCccEEEEeccCCEEEEEecC
Confidence 48888877544433332 14678999999975 679999976
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEec---cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
.. +|++++.++...+.+.. .+..|.||+++.+ .|||+++..++|.+++...++ ..+++.
T Consensus 561 ~~--------------~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~--~~~~i~ 622 (699)
T 1n7d_A 561 LH--------------SISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS--DVNLLA 622 (699)
T ss_dssp TT--------------EEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE--EEECCC
T ss_pred CC--------------eEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC--ceEEee
Confidence 43 88999987665555553 3678999999654 799999999999999863211 122222
Q ss_pred cCCCCCCCceeECCCC
Q psy4771 289 DGLPGLPDNVKRDSKG 304 (337)
Q Consensus 289 ~~~~g~Pdgi~~d~dG 304 (337)
.++. .|.+|++..+.
T Consensus 623 ~~~~-~P~~i~v~~~~ 637 (699)
T 1n7d_A 623 ENLL-SPEDMVLFHQL 637 (699)
T ss_dssp TTCS-SCCCCCBCSSS
T ss_pred cCCC-CCcEEEEeCcc
Confidence 2222 37888776443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-12 Score=113.50 Aligned_cols=217 Identities=11% Similarity=0.116 Sum_probs=141.9
Q ss_pred cCccEEEe-eCC-eEE-EEecCcEEEEEeCCceeE-EEecCccccCccccCccCCcce-EEECCCCc-EEEEECCC----
Q psy4771 63 HGPEAVVK-HKG-DLY-MGVDGGHILKLSGGKLVP-VVKLGKDCYGFKYEQQCGRPLG-IKFDKNGA-LHVADAYF---- 132 (337)
Q Consensus 63 ~~P~~i~~-~~g-~ly-~d~~~g~I~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~P~G-l~~d~~G~-lyVad~~~---- 132 (337)
..| ++++ .++ .+| ++..+++|+.++...... ...+ .....|.. ++++++|+ || +....
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~ 108 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI----------QEGQSSMADVDITPDDQFAV-TVTGLNHPF 108 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE----------EECSSCCCCEEECTTSSEEE-ECCCSSSSC
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec----------ccCCCCccceEECCCCCEEE-EecCCCCcc
Confidence 345 8888 444 588 666688999998732211 1111 12245777 99999995 56 43333
Q ss_pred cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccc-eeeeccccCC----------CCCCCCcc
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQ-LISMDTEIDG----------AKPQIPNS 196 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~-v~~~~~~~~~----------~~~~~pn~ 196 (337)
.|..+|.++++...... .+. .|+.++++++|+.+ ..+. +...+..-.+ .....|.+
T Consensus 109 ~i~v~d~~~~~~~~~~~-----~~~---~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 180 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIP-----IPY---DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFN 180 (331)
T ss_dssp EEEEEETTTTEEEEEEE-----CCT---TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred cEEEEECCCCCeEEEEE-----CCC---CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence 59999998887655543 122 37899999999865 2244 4433211000 12356899
Q ss_pred EEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 197 VTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 197 v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
++++++|+ +|+++.. .+.|..+|.++++. .........|.+++++|||++||++....+.|.
T Consensus 181 ~~~spdg~~l~v~~~~--------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~ 246 (331)
T 3u4y_A 181 ITFTPDGNFAFVANLI--------------GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVF 246 (331)
T ss_dssp EEECTTSSEEEEEETT--------------TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEE
T ss_pred eEECCCCCEEEEEeCC--------------CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEE
Confidence 99999997 8988765 34788888887765 333444578899999999999999998888999
Q ss_pred EEEeeCCCCCceeeeecCC---CC---CCCceeECCCCC-EEEEecCC
Q psy4771 273 RYYLKGPKQGKSEVFIDGL---PG---LPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 273 ~~~~~g~~~~~~~~~~~~~---~g---~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+++++..+......+.... +. ...++++++||+ +|++....
T Consensus 247 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 247 NFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp EEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred EEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 9997643322222222211 11 124589999997 78887544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-12 Score=117.18 Aligned_cols=248 Identities=9% Similarity=0.124 Sum_probs=147.4
Q ss_pred CceeccCcccCccEEEe-eCCe-EEEEecCcEEEEEeCC-ceeE-EEecCccccCccccCccCCcceEEECC----CCcE
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGD-LYMGVDGGHILKLSGG-KLVP-VVKLGKDCYGFKYEQQCGRPLGIKFDK----NGAL 125 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~-ly~d~~~g~I~~~~~~-~~~~-~~~~g~~~~~~~~~~~~~~P~Gl~~d~----~G~l 125 (337)
++.+++ .+..|.+|++ .+|. +|+....|+|++++.+ +... +..+... .....+.|+||++++ +|.|
T Consensus 10 ~~~va~-~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v-----~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 10 VEVLQD-KLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDV-----WAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp EEEEEE-EESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCC-----CCSTTCSEEEEEECTTHHHHCEE
T ss_pred EEEEEC-CCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCccc-----ccCCCCCceeEEECCCCCCCCEE
Confidence 344444 3678999999 7888 9976678999999863 3221 1111100 012235689999999 4899
Q ss_pred EEEECC--------CcEEEEEcCCC--e---EEEEeccccccCCCCCCCCCceeeCCCCCcc-c----------------
Q psy4771 126 HVADAY--------FGLYKVNVTTG--Q---TEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-Q---------------- 175 (337)
Q Consensus 126 yVad~~--------~gv~~vd~~~g--~---~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-~---------------- 175 (337)
||++.. ..|.+++.+.+ . .+.+.... .........|..+++++||+++ .
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~-p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~ 162 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQM-PKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKL 162 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECS-SCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEEC-CCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCC
Confidence 999753 24888876533 2 23333210 0000111357889999999888 1
Q ss_pred ccceeeeccccC-------------C-----CCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEE-----
Q psy4771 176 TEQLISMDTEID-------------G-----AKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ----- 231 (337)
Q Consensus 176 ~~~v~~~~~~~~-------------~-----~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~----- 231 (337)
.+.|..++.+.. . ..+..|.++++|+ +|+||++|...+..+-+..+ ..|.-|-
T Consensus 163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i---~~G~nyGwp~~~ 239 (353)
T 2g8s_A 163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIP---QKGKNYGWPLAT 239 (353)
T ss_dssp TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECC---CTTCBCCTTTBC
T ss_pred CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEe---ccCCcCCCCCcc
Confidence 135777764321 0 1346699999999 79999999874311101000 0010000
Q ss_pred ----EcC----------CCCee--EEEeccccceeeEEEccCC------CEEEEEeCCCCEEEEEEeeCCCCCceeeeec
Q psy4771 232 ----YNP----------KTKKN--KVLIANLHFANGVELSADE------SFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289 (337)
Q Consensus 232 ----~d~----------~~~~~--~~~~~~~~~p~gia~~~dg------~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~ 289 (337)
|+. ..+.. .........|.|+++.... ..+||++...++|+++++++.+....+.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~ 319 (353)
T 2g8s_A 240 WGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT 319 (353)
T ss_dssp SSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG
T ss_pred CCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc
Confidence 000 00000 0111223468999997421 3799999999999999998643222334443
Q ss_pred CCCCCCCceeECCCCCEEEEec
Q psy4771 290 GLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 290 ~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
...+.|.+|++++||.|||+..
T Consensus 320 ~~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 320 DRGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp GGCCCEEEEEECTTSCEEEEEC
T ss_pred CCCCceeEEEECCCCcEEEEEe
Confidence 3445799999999999999853
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-12 Score=116.83 Aligned_cols=184 Identities=14% Similarity=0.170 Sum_probs=124.7
Q ss_pred cCccEEEe-eCCeEE-EEecC----cEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC---
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDG----GHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY--- 131 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~----g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~--- 131 (337)
..|.++++ .+|.+| ++..+ +.|++++..+ ...+. .. ......|+++++|++|++|+++..
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~--~~-------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII--ED-------LSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE--CS-------SSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE--cc-------CccCCcccceEECCCCCEEEEeccccc
Confidence 36888888 678888 55555 5899998732 22221 10 012356899999999999999864
Q ss_pred ----CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EE
Q psy4771 132 ----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VY 206 (337)
Q Consensus 132 ----~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-ly 206 (337)
.+|++++++++++..+.. ....+++++++++|+ +|
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~----------------------------------------~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQ----------------------------------------NISVANGIALSTDEKVLW 197 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEE----------------------------------------EESSEEEEEECTTSSEEE
T ss_pred cCCCceEEEEeCCCCEEEEeec----------------------------------------CCCcccceEECCCCCEEE
Confidence 359999988777665542 123489999999996 99
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCC-C-eeEE-----E--eccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKT-K-KNKV-----L--IANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~-~-~~~~-----~--~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+++.. .+.|+++|.++ + .... . ..+...|++++++++|+ +|+++...++|.+|+.+
T Consensus 198 v~~~~--------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 198 VTETT--------------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEGG--------------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred EEeCC--------------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCC
Confidence 98754 23677777642 2 2211 1 11224799999999995 99999888899999875
Q ss_pred CCCCCceeeeecCCC--C---CCCceeECCCC-CEEEEecCC
Q psy4771 278 GPKQGKSEVFIDGLP--G---LPDNVKRDSKG-NFLVSLVCP 313 (337)
Q Consensus 278 g~~~~~~~~~~~~~~--g---~Pdgi~~d~dG-~l~va~~~~ 313 (337)
+. ....+..... | .|.++++++|| .||++....
T Consensus 263 g~---~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 263 GY---PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp SC---EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CC---EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 42 1222221111 1 58999999997 699988654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-12 Score=112.48 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=114.2
Q ss_pred cCccEEEeeCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCcc-CCcceEEECCCC-cEEEEECCCcEEEEEc
Q psy4771 63 HGPEAVVKHKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQC-GRPLGIKFDKNG-ALHVADAYFGLYKVNV 139 (337)
Q Consensus 63 ~~P~~i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~P~Gl~~d~~G-~lyVad~~~gv~~vd~ 139 (337)
..+++++..++.|| ++..++++.++|..+.+.+..+. .. ..+.|++. +| +||+++..+.|..+|+
T Consensus 66 ~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~----------~g~~~g~glt~--Dg~~l~vs~gs~~l~viD~ 133 (266)
T 2iwa_A 66 YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFT----------HQMKDGWGLAT--DGKILYGSDGTSILYEIDP 133 (266)
T ss_dssp CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEE----------CCSSSCCEEEE--CSSSEEEECSSSEEEEECT
T ss_pred cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEE----------CCCCCeEEEEE--CCCEEEEECCCCeEEEEEC
Confidence 35678888888999 88889999999986554444331 11 23445555 44 9999985455999999
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
++.++..-+... ..+ .+...||.+.+. +|.+|++....
T Consensus 134 ~t~~v~~~I~Vg--~~~--------------------------------~p~~~~nele~~-dg~lyvn~~~~------- 171 (266)
T 2iwa_A 134 HTFKLIKKHNVK--YNG--------------------------------HRVIRLNELEYI-NGEVWANIWQT------- 171 (266)
T ss_dssp TTCCEEEEEECE--ETT--------------------------------EECCCEEEEEEE-TTEEEEEETTS-------
T ss_pred CCCcEEEEEEEC--CCC--------------------------------cccccceeEEEE-CCEEEEecCCC-------
Confidence 987765444311 111 145678999988 78999988753
Q ss_pred eeeecCCccEEEEcCCCCeeEEEec--cc------------cceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIA--NL------------HFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~--~~------------~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+.|.++|++++++....+ ++ ..|||||++++++++||+....++|+++++..
T Consensus 172 -------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 172 -------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp -------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred -------CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 389999999998754442 22 47899999999999999999999999999864
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-12 Score=118.95 Aligned_cols=157 Identities=13% Similarity=0.233 Sum_probs=108.4
Q ss_pred cCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 111 CGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+..|.+|+++++|+|||++....|++++ +++...+.... ... ..
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~--v~~--------------------------------~g 73 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELS--VYH--------------------------------RG 73 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECC--CCC--------------------------------ST
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecce--Eee--------------------------------cC
Confidence 4679999999999999999765699998 45555554311 000 13
Q ss_pred CCCCccEEEcCC----CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe---eEEEec-------cccceeeEEEcc
Q psy4771 191 PQIPNSVTVDSD----GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK---NKVLIA-------NLHFANGVELSA 256 (337)
Q Consensus 191 ~~~pn~v~vd~~----G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~---~~~~~~-------~~~~p~gia~~~ 256 (337)
...|++|+++++ |.||+++.... + ....+|++++.+++. .+.+.. ....+++|++++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~--~-------~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p 144 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAE--G-------GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP 144 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECT--T-------SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCC--C-------CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC
Confidence 467999999997 78999986421 0 012478888766442 223322 245789999999
Q ss_pred CCCEEEEEeCC-------------CCEEEEEEeeCCCC----------CceeeeecCCCCCCCceeECC-CCCEEEEecC
Q psy4771 257 DESFVIVAETM-------------SSRVHRYYLKGPKQ----------GKSEVFIDGLPGLPDNVKRDS-KGNFLVSLVC 312 (337)
Q Consensus 257 dg~~lyva~~~-------------~~~I~~~~~~g~~~----------~~~~~~~~~~~g~Pdgi~~d~-dG~l~va~~~ 312 (337)
|| .|||+... .++|+|++.+|.-. ...++++.++.. |.||++|+ +|+||++...
T Consensus 145 dG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 145 DG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHG 222 (352)
T ss_dssp TS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEEC
T ss_pred CC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcC
Confidence 99 69999742 36899999876210 234566655433 99999999 7899999976
Q ss_pred CC
Q psy4771 313 PV 314 (337)
Q Consensus 313 ~~ 314 (337)
..
T Consensus 223 ~~ 224 (352)
T 2ism_A 223 PS 224 (352)
T ss_dssp C-
T ss_pred CC
Confidence 63
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-12 Score=116.77 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=108.2
Q ss_pred ccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 110 QCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
.+..|.+|+++++|+|||++....|++++.+ |+ +.+.... ... .
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~-~~~~~~~--v~~--------------------------------~ 70 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERPGRLVLISPS-GK-KLVASFD--VAN--------------------------------V 70 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETTTEEEEECSS-CE-EEEEECC--CCC--------------------------------S
T ss_pred CCCCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc-eEeeccc--eee--------------------------------c
Confidence 3567999999999999999976569999854 55 4444310 000 0
Q ss_pred CCCCCccEEEcCC----CcEEEEcCC-CCccCceeeeeecCCccEEEEcCCCC-----eeEEEec-----cccceeeEEE
Q psy4771 190 KPQIPNSVTVDSD----GMVYWSDSS-TKYKSGLFEGLTSGSGRLIQYNPKTK-----KNKVLIA-----NLHFANGVEL 254 (337)
Q Consensus 190 ~~~~pn~v~vd~~----G~lyvtd~~-~~~~~~~~~~~~~~~G~v~~~d~~~~-----~~~~~~~-----~~~~p~gia~ 254 (337)
....|++|+++++ |.||+++.. .. + .....+|++++.+++ +.+++.. ....+++|++
T Consensus 71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~--~------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~ 142 (354)
T 3a9g_A 71 GEAGLLGLALHPEFPKKSWVYLYASYFAE--G------GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRF 142 (354)
T ss_dssp TTCSEEEEEECTTTTTSCEEEEEEEEECG--G------GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEE
T ss_pred CCCceeeEEeCCCCCcCCEEEEEEeccCC--C------CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEE
Confidence 2456899999996 889999863 10 0 001147888876644 1223322 2457899999
Q ss_pred ccCCCEEEEEeCC-------------CCEEEEEEeeCCCC-----CceeeeecCCCCCCCceeECC-CCCEEEEecCC
Q psy4771 255 SADESFVIVAETM-------------SSRVHRYYLKGPKQ-----GKSEVFIDGLPGLPDNVKRDS-KGNFLVSLVCP 313 (337)
Q Consensus 255 ~~dg~~lyva~~~-------------~~~I~~~~~~g~~~-----~~~~~~~~~~~g~Pdgi~~d~-dG~l~va~~~~ 313 (337)
++|| .|||+... .++|+|++.+|.-. ...++++.++.. |.||++|+ +|+||++....
T Consensus 143 ~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~ 218 (354)
T 3a9g_A 143 GPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGP 218 (354)
T ss_dssp CTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCS
T ss_pred CCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCC
Confidence 9999 49999642 36899999876411 124677665544 99999999 79999999765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-11 Score=104.85 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=113.7
Q ss_pred ccEEEeeCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCe
Q psy4771 65 PEAVVKHKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 65 P~~i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~ 143 (337)
.++++..++.|| ++..+++++++|..+.+.+.++. ..+.+.|++.|. ++||++|....|..+|+++.+
T Consensus 89 geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~----------~~~eG~glt~dg-~~L~~SdGs~~i~~iDp~T~~ 157 (262)
T 3nol_A 89 GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN----------YDGEGWGLTHND-QYLIMSDGTPVLRFLDPESLT 157 (262)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE----------CSSCCCCEEECS-SCEEECCSSSEEEEECTTTCS
T ss_pred eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE----------CCCCceEEecCC-CEEEEECCCCeEEEEcCCCCe
Confidence 377888889999 88889999999986655554442 123457888753 499999865569999999877
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
+..-+.. ...| .++..+|.+... +|.||+..+..+
T Consensus 158 v~~~I~V--~~~g--------------------------------~~~~~lNELe~~-~G~lyan~w~~~---------- 192 (262)
T 3nol_A 158 PVRTITV--TAHG--------------------------------EELPELNELEWV-DGEIFANVWQTN---------- 192 (262)
T ss_dssp EEEEEEC--EETT--------------------------------EECCCEEEEEEE-TTEEEEEETTSS----------
T ss_pred EEEEEEe--ccCC--------------------------------ccccccceeEEE-CCEEEEEEccCC----------
Confidence 6554431 1122 246678888876 789999887643
Q ss_pred cCCccEEEEcCCCCeeEEEecc-------------ccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIAN-------------LHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~-------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|.++|+++|++....+- ...|||||++|++++|||+...=.+++++.+.
T Consensus 193 ----~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~ 255 (262)
T 3nol_A 193 ----KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT 255 (262)
T ss_dssp ----EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ----eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence 899999999987654432 24789999999999999999776788888764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-10 Score=105.38 Aligned_cols=224 Identities=15% Similarity=0.171 Sum_probs=134.3
Q ss_pred ccCccEEEe-eC-CeEEEEec----CcEEE--EEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC
Q psy4771 62 IHGPEAVVK-HK-GDLYMGVD----GGHIL--KLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY 131 (337)
Q Consensus 62 ~~~P~~i~~-~~-g~ly~d~~----~g~I~--~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~ 131 (337)
...|.++++ .+ ..||+... +++|. .++. ++.+.+.... .....|.++++ ....||+++..
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~---------~~~~~p~~~~~-dg~~l~~~~~~ 118 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK---------TMGADPCYLTT-NGKNIVTANYS 118 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE---------CSSSCEEEEEE-CSSEEEEEETT
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec---------cCCCCcEEEEE-CCCEEEEEECC
Confidence 457888998 44 46885444 36664 4555 4444443221 12356889999 33378998855
Q ss_pred Cc-EEEEEcC-CCeEEEEeccccccCCC-------CCCCCCceeeCCCCCcc-----cccceeeeccccC----------
Q psy4771 132 FG-LYKVNVT-TGQTEQLISMDTEIDGA-------KPQIPNSVTVDSDGQTG-----QTEQLISMDTEID---------- 187 (337)
Q Consensus 132 ~g-v~~vd~~-~g~~~~l~~~~~~~~g~-------~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~---------- 187 (337)
.+ +..++.+ ++.+..+.... ...|. ....|+.++++++|+.+ ..+.|..+.....
T Consensus 119 ~~~v~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 119 GGSITVFPIGQDGALLPASDVI-EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp TTEEEEEEBCTTSCBCSCSEEE-ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred CCEEEEEEeCCCCcCcccceeE-EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 44 6666654 23322211100 01111 01234679999999955 2344444431111
Q ss_pred ---------CCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe------ccccceee
Q psy4771 188 ---------GAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI------ANLHFANG 251 (337)
Q Consensus 188 ---------~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~------~~~~~p~g 251 (337)
......|+++++++||+ +|+++... +.|..++.++++.+.+. .+...|.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--------------~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG--------------GTVIAFRYADGMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--------------CEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC--------------CeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence 11245688999999997 88887542 35666665566553332 12345789
Q ss_pred EEEccCCCEEEEEeCC-CCEEEEEEeeC--CCCCceeeeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 252 VELSADESFVIVAETM-SSRVHRYYLKG--PKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 252 ia~~~dg~~lyva~~~-~~~I~~~~~~g--~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
++++|||++||+++.. .++|..|+++. +.......+. . ...|.++++++||+ +|++...
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEEEETT
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEEEECC
Confidence 9999999999999998 88999999862 2111111111 1 34689999999998 8888744
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-11 Score=109.50 Aligned_cols=180 Identities=21% Similarity=0.263 Sum_probs=120.8
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-------Cc
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-------FG 133 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-------~g 133 (337)
.|.++++ .+|.+|+...+ .|++++. ++...+..... .....+++++++|++|++|+++.. .+
T Consensus 91 ~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~-------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~ 162 (326)
T 2ghs_A 91 MGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES-------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGS 162 (326)
T ss_dssp CEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST-------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEE
T ss_pred cceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCC-------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceE
Confidence 4667777 68888865554 4999986 34433321110 012346899999999999999742 35
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST 212 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~ 212 (337)
|++++ ++++..+.. ....++++++++||+ +|+++...
T Consensus 163 l~~~~--~g~~~~~~~----------------------------------------~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 163 IYHVA--KGKVTKLFA----------------------------------------DISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EEEEE--TTEEEEEEE----------------------------------------EESSEEEEEECTTSCEEEEEETTT
T ss_pred EEEEe--CCcEEEeeC----------------------------------------CCcccCCeEEcCCCCEEEEEECCC
Confidence 99998 466655432 123589999999996 99988652
Q ss_pred CccCceeeeeecCCccEEEEcCC--CC-ee---EEEe---ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPK--TK-KN---KVLI---ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~--~~-~~---~~~~---~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
+.|+++|.+ +| +. +.+. .....|++++++++| .|||+....++|.+|+.++..
T Consensus 201 --------------~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~--- 262 (326)
T 2ghs_A 201 --------------NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNH--- 262 (326)
T ss_dssp --------------CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCE---
T ss_pred --------------CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCE---
Confidence 378888764 55 32 1222 123578999999999 499999888899999874321
Q ss_pred eeeeecCCCC-CCCceeEC-CCC-CEEEEecCC
Q psy4771 284 SEVFIDGLPG-LPDNVKRD-SKG-NFLVSLVCP 313 (337)
Q Consensus 284 ~~~~~~~~~g-~Pdgi~~d-~dG-~l~va~~~~ 313 (337)
...+. ++. .|.+++++ +++ .+||+....
T Consensus 263 ~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 263 IARYE--VPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEE--CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEE--CCCCCcEEEEEecCCCCEEEEEecCC
Confidence 12222 222 47889997 776 499998765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-10 Score=101.13 Aligned_cols=197 Identities=12% Similarity=0.161 Sum_probs=124.2
Q ss_pred cCcccCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-c
Q psy4771 59 ENEIHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-G 133 (337)
Q Consensus 59 ~g~~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-g 133 (337)
.|....+.++++ +++.|| +...+++|++++. ++......+ ..+..+.||+++++|.+||++... +
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l----------~g~~D~EGIa~~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL----------DFVKDLETIEYIGDNQFVISDERDYA 92 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC----------SSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec----------CCCCChHHeEEeCCCEEEEEECCCCc
Confidence 344456788888 367899 6888999999998 443322222 223679999999999999997554 5
Q ss_pred EEEEEcCC-CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCC
Q psy4771 134 LYKVNVTT-GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS 211 (337)
Q Consensus 134 v~~vd~~~-g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~ 211 (337)
++.++... +.+..+....... +. ...=....+|++|+++ ++|++...
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~-~~------------------------------~~~N~g~EGLA~d~~~~~L~va~E~ 141 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPL-QE------------------------------SPTNCGFEGLAYSRQDHTFWFFKEK 141 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCC-SS------------------------------CCCSSCCEEEEEETTTTEEEEEEES
T ss_pred EEEEEcCCCCeeeeeeeecccc-cc------------------------------ccccCCcceEEEeCCCCEEEEEECc
Confidence 66665432 3222222110000 00 0011235899999977 69987654
Q ss_pred CCccCceeeeeecCCccEEEEc--CCCCeeEEEec-------cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYN--PKTKKNKVLIA-------NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG 282 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d--~~~~~~~~~~~-------~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~ 282 (337)
.. ..||.++ +.+.....+.+ .+.-+.+++++|..+++|+....++.|..++.+|.. .
T Consensus 142 ~p-------------~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-~ 207 (255)
T 3qqz_A 142 NP-------------IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-I 207 (255)
T ss_dssp SS-------------EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-E
T ss_pred CC-------------ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-E
Confidence 21 2677776 22223333321 234679999999988999999999999999987641 1
Q ss_pred ceeeeecCC------CCCCCceeECCCCCEEEEe
Q psy4771 283 KSEVFIDGL------PGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 283 ~~~~~~~~~------~g~Pdgi~~d~dG~l~va~ 310 (337)
....+..+. ...|.||++|++|++||++
T Consensus 208 ~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 208 GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred EEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 111111111 1258999999999999996
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.9e-11 Score=102.41 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=114.3
Q ss_pred ccEEEeeCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCe
Q psy4771 65 PEAVVKHKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 65 P~~i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~ 143 (337)
.++++..++.|| ++..+++++++|..+.+.+.++. ..+.+.|++.|. ++||++|....|..+|+++.+
T Consensus 67 geGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~----------~~~~Gwglt~dg-~~L~vSdgs~~l~~iDp~t~~ 135 (243)
T 3mbr_X 67 GAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR----------YPGEGWALTSDD-SHLYMSDGTAVIRKLDPDTLQ 135 (243)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE----------CSSCCCEEEECS-SCEEEECSSSEEEEECTTTCC
T ss_pred eeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe----------CCCCceEEeeCC-CEEEEECCCCeEEEEeCCCCe
Confidence 478888889999 88899999999986665554442 123567888653 499999965569999999877
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
+..-+... ..|. ++..+|.+... +|+||+..+..+
T Consensus 136 ~~~~I~V~--~~g~--------------------------------~~~~lNeLe~~-~G~lyanvw~s~---------- 170 (243)
T 3mbr_X 136 QVGSIKVT--AGGR--------------------------------PLDNLNELEWV-NGELLANVWLTS---------- 170 (243)
T ss_dssp EEEEEECE--ETTE--------------------------------ECCCEEEEEEE-TTEEEEEETTTT----------
T ss_pred EEEEEEEc--cCCc--------------------------------ccccceeeEEe-CCEEEEEECCCC----------
Confidence 65544321 1221 45667888876 789998887644
Q ss_pred cCCccEEEEcCCCCeeEEEec--------------cccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIA--------------NLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~--------------~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|.++|+++|++....+ ....+||||+++++++|||+...=.+++.+.+.
T Consensus 171 ----~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~ 234 (243)
T 3mbr_X 171 ----RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT 234 (243)
T ss_dssp ----EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred ----eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence 89999999998755432 124789999999999999999776788888764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-11 Score=105.01 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=112.7
Q ss_pred ccEEEeeCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCe
Q psy4771 65 PEAVVKHKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 65 P~~i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~ 143 (337)
.|+++..++.|| ++..+++++++|..+.+.+.++. ..+.+.|++.|. ++||++|....|..+|+++.+
T Consensus 98 geGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~----------~~~eGwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~ 166 (268)
T 3nok_A 98 AEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR----------YSGEGWGLCYWN-GKLVRSDGGTMLTFHEPDGFA 166 (268)
T ss_dssp EEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE----------CSSCCCCEEEET-TEEEEECSSSEEEEECTTTCC
T ss_pred eeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe----------CCCceeEEecCC-CEEEEECCCCEEEEEcCCCCe
Confidence 377888888999 88889999999986665554442 123467888763 499999965569999999887
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
+..-+.. ...| .++..+|.+... +|.||+..+..+
T Consensus 167 v~~~I~V--~~~g--------------------------------~~v~~lNeLe~~-dG~lyanvw~s~---------- 201 (268)
T 3nok_A 167 LVGAVQV--KLRG--------------------------------QPVELINELECA-NGVIYANIWHSS---------- 201 (268)
T ss_dssp EEEEEEC--EETT--------------------------------EECCCEEEEEEE-TTEEEEEETTCS----------
T ss_pred EEEEEEe--CCCC--------------------------------cccccccccEEe-CCEEEEEECCCC----------
Confidence 6654432 1122 146678888887 789999887643
Q ss_pred cCCccEEEEcCCCCeeEEEecc--------------ccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIAN--------------LHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~--------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.|.++|+++|++....+- ...+||||+++++++|||+...=.+++.+.+
T Consensus 202 ----~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 202 ----DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp ----EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred ----eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 899999999987554321 1378999999999999999876677777765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-10 Score=102.89 Aligned_cols=226 Identities=14% Similarity=0.065 Sum_probs=129.9
Q ss_pred eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCC-cEEEEEcCCCeEEEE
Q psy4771 71 HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQL 147 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~-gv~~vd~~~g~~~~l 147 (337)
.++.+| ++..+++|..|+..+.+....+.. +....|.+++++++|+ +|++.... .|+.+|.++++....
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 466777 788899999999743322222210 1112589999999994 88887654 499999988876544
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcc---c-------------ccceeeecccc---CC-----CCCCCCccEEEcCCC
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTG---Q-------------TEQLISMDTEI---DG-----AKPQIPNSVTVDSDG 203 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~---~-------------~~~v~~~~~~~---~~-----~~~~~pn~v~vd~~G 203 (337)
.... ...+.....|..+++++||+.+ . .+.|..++..- .. .....+.+++++++|
T Consensus 81 ~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLS-SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 159 (349)
T ss_dssp EESC-CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred EEcc-cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence 4310 0000000137889999999887 2 25555554221 11 012357788899999
Q ss_pred cEEEEcCCCC-c--cCc-e-eeeeecC---------------------------------------------CccEEEEc
Q psy4771 204 MVYWSDSSTK-Y--KSG-L-FEGLTSG---------------------------------------------SGRLIQYN 233 (337)
Q Consensus 204 ~lyvtd~~~~-~--~~~-~-~~~~~~~---------------------------------------------~G~v~~~d 233 (337)
++|+++..-. + ..+ . ..+.... ...++.+|
T Consensus 160 ~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 160 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp CEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred cEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 9887643200 0 000 0 0000000 00112244
Q ss_pred CCCCeeEEEe--ccccceeeEEEcc-CCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEE
Q psy4771 234 PKTKKNKVLI--ANLHFANGVELSA-DESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVS 309 (337)
Q Consensus 234 ~~~~~~~~~~--~~~~~p~gia~~~-dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va 309 (337)
..++++..+. .....+.++++++ ||+.+|++ .++|.+++++.. +...... .+..|.+++++++|+ +|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQR---KLIKAAN-LDHTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECSSSSCEEEE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccC---eEEEEEc-CCCCccceEECCCCCEEEEe
Confidence 4444432221 1123678899999 99999999 679999997543 2211122 234588999999985 8886
Q ss_pred ecC
Q psy4771 310 LVC 312 (337)
Q Consensus 310 ~~~ 312 (337)
...
T Consensus 313 ~~~ 315 (349)
T 1jmx_B 313 GTF 315 (349)
T ss_dssp SBS
T ss_pred cCC
Confidence 433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-10 Score=101.92 Aligned_cols=183 Identities=13% Similarity=0.025 Sum_probs=119.9
Q ss_pred cCccEEEe-eCCeEEEEec---CcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEE
Q psy4771 63 HGPEAVVK-HKGDLYMGVD---GGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKV 137 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly~d~~---~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~v 137 (337)
..|+++++ .++.||++.. +++|.++|..+.+.+..+. .+....+.|++++. ++||+++...+ ++.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------l~~~~fgeGi~~~g-~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------MDDSYFGEGLTLLN-EKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------CCTTCCEEEEEEET-TEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------cCCCcceEEEEEeC-CEEEEEEecCCEEEEE
Confidence 35789999 4589995543 5789999984333332221 01223466888873 49999997655 9999
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~~~~~ 216 (337)
|+++.++..-+.. + .+.+..+.+|| ++|+++. +
T Consensus 92 D~~t~~v~~~i~~---------------------------------------g--~~~g~glt~Dg~~l~vs~g-s---- 125 (266)
T 2iwa_A 92 DRRTLSNIKNFTH---------------------------------------Q--MKDGWGLATDGKILYGSDG-T---- 125 (266)
T ss_dssp ETTTTEEEEEEEC---------------------------------------C--SSSCCEEEECSSSEEEECS-S----
T ss_pred ECCCCcEEEEEEC---------------------------------------C--CCCeEEEEECCCEEEEECC-C----
Confidence 9988765543321 1 23344455555 5999883 2
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEEec------cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIA------NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDG 290 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~~~------~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~ 290 (337)
+.|+.+|+++.+...-.. .+..||++.+. || .||++....+.|.++++...+... .+-..+
T Consensus 126 ----------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g 192 (266)
T 2iwa_A 126 ----------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLG-WILLPN 192 (266)
T ss_dssp ----------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEE-EEECHH
T ss_pred ----------CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEE-EEECCC
Confidence 489999999876433221 23468999988 66 799999999999999986543211 111111
Q ss_pred C---------C--CCCCceeECCCCC-EEEEecCC
Q psy4771 291 L---------P--GLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 291 ~---------~--g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+ + ..|.||+++++|+ +||+.-..
T Consensus 193 ~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 193 LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred cccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 1 1 2578999999985 99998433
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-10 Score=104.43 Aligned_cols=181 Identities=14% Similarity=0.152 Sum_probs=114.9
Q ss_pred CCcceEEECCCC-cEEEEECC----Cc--EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccce
Q psy4771 112 GRPLGIKFDKNG-ALHVADAY----FG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQL 179 (337)
Q Consensus 112 ~~P~Gl~~d~~G-~lyVad~~----~g--v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v 179 (337)
..|.+++++++| .||+++.. .. ++.++.++|+.+.+... ...+. .|+.+++ +|+.+ ..+.+
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~--~~~~~---~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ--KTMGA---DPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE--ECSSS---CEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe--ccCCC---CcEEEEE--CCCEEEEEECCCCEE
Confidence 569999999999 48888763 23 46778777877666542 11222 4788888 67755 22344
Q ss_pred eeeccccCCC--------------------CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC-
Q psy4771 180 ISMDTEIDGA--------------------KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK- 237 (337)
Q Consensus 180 ~~~~~~~~~~--------------------~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~- 237 (337)
..++....+. ....+++++++++|+ +|+++...+ .-.+|.++..++
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------------~v~v~~~~~~~~~ 190 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD------------QIHKFNINPNANA 190 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT------------EEEEEEECTTCCT
T ss_pred EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC------------EEEEEEEcCCCCc
Confidence 4443221110 012347799999997 999886532 014455565544
Q ss_pred ---e-e-------EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC---CCCCceeECCC
Q psy4771 238 ---K-N-------KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP---GLPDNVKRDSK 303 (337)
Q Consensus 238 ---~-~-------~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~---g~Pdgi~~d~d 303 (337)
+ + .........|++++++|||++||+++...++|.+|+++++.......+.. .+ ..|.++++++|
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~spd 269 (361)
T 3scy_A 191 DNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA-DTVNAQGSGDIHLSPD 269 (361)
T ss_dssp TTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES-CSSCCCCEEEEEECTT
T ss_pred ccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec-CCCCCCCcccEEECCC
Confidence 2 2 12233456789999999999999999888999999997432221121111 11 12569999999
Q ss_pred CC-EEEEecC
Q psy4771 304 GN-FLVSLVC 312 (337)
Q Consensus 304 G~-l~va~~~ 312 (337)
|+ +|++...
T Consensus 270 g~~l~v~~~~ 279 (361)
T 3scy_A 270 GKYLYASNRL 279 (361)
T ss_dssp SSEEEEEECS
T ss_pred CCEEEEECCC
Confidence 98 7787765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=8e-10 Score=99.86 Aligned_cols=218 Identities=13% Similarity=0.183 Sum_probs=132.6
Q ss_pred CccEEEe-eC-CeEEEEec-CcEEEEEeC----CceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCc-E
Q psy4771 64 GPEAVVK-HK-GDLYMGVD-GGHILKLSG----GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFG-L 134 (337)
Q Consensus 64 ~P~~i~~-~~-g~ly~d~~-~g~I~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~g-v 134 (337)
.|.++++ .+ ..+|+... +++|..|+. ++...+..+ ...+.|.+++++++|+ ||++....+ |
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES----------ALPGSLTHISTDHQGQFVFVGSYNAGNV 108 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----------ECSSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc----------ccCCCCcEEEEcCCCCEEEEEecCCCeE
Confidence 6788888 44 45885444 488877653 344333222 1123689999999995 888876444 7
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeecccc------------CCCCCCCCccE
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEI------------DGAKPQIPNSV 197 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~------------~~~~~~~pn~v 197 (337)
..+|.+.+....... ...+. ..|..++++++|+.+ ..+.|..++... .......|+++
T Consensus 109 ~~~d~~~~~~~~~~~---~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVD---VVEGL--DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp EEEEEETTEEEEEEE---EECCC--TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred EEEECCCCccccccc---cccCC--CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 777763333222221 11111 137889999999865 223444433211 11123467889
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcC--CCCeeEEE--ec----c---ccceeeEEEccCCCEEEEEe
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNP--KTKKNKVL--IA----N---LHFANGVELSADESFVIVAE 265 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~--~~~~~~~~--~~----~---~~~p~gia~~~dg~~lyva~ 265 (337)
+++++|+ +|+++... +.+..++. .+++.... .. + ...+.++++++||+.||++.
T Consensus 184 ~~~pdg~~l~~~~~~~--------------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELN--------------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp EECTTSSEEEEEETTT--------------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred EECCCCCEEEEEeCCC--------------CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence 9999997 88887542 35555554 34443221 11 1 23566899999999999999
Q ss_pred CCCCEEEEEEeeC--CCCCceeeeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 266 TMSSRVHRYYLKG--PKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 266 ~~~~~I~~~~~~g--~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
...+.|.+|+++. ........+ . ..+.|.+++++++|+ +|++...
T Consensus 250 ~~~~~i~v~d~~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 250 RTASLITVFSVSEDGSVLSKEGFQ-P-TETQPRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp TTTTEEEEEEECTTSCCEEEEEEE-E-CSSSCCCEEECTTSSEEEEECTT
T ss_pred cCCCEEEEEEEcCCCCceEEeeee-c-CCCccceEEECCCCCEEEEecCC
Confidence 8889999999973 211111111 1 223489999999998 7777743
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-11 Score=109.61 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=109.4
Q ss_pred CccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
..+..|.+|++.++|+|||++.. ..|++++.++++...+.... ...
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~-~v~-------------------------------- 75 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP-GVS-------------------------------- 75 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT-TCC--------------------------------
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC-cee--------------------------------
Confidence 34577999999999999999973 44999988777665543210 010
Q ss_pred CCCCCCCccEEEcCC----CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCC--------eeEEEec-----ccccee
Q psy4771 188 GAKPQIPNSVTVDSD----GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK--------KNKVLIA-----NLHFAN 250 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~----G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~--------~~~~~~~-----~~~~p~ 250 (337)
......+.+|+++++ |.||++.+... .++|.|+....+ +.+++.. ..++.+
T Consensus 76 ~~g~~GllGia~~Pdf~~~g~lYv~yt~~~------------~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~ 143 (347)
T 3das_A 76 PSGEGGLLGIALSPDYASDHMVYAYFTSAS------------DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGG 143 (347)
T ss_dssp CBTTBSEEEEEECTTHHHHCEEEEEEECSS------------SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCC
T ss_pred ecCCCCceeeEeccccccCCEEEEEEecCC------------CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCc
Confidence 013456899999984 88999764311 236777765431 2233332 245677
Q ss_pred eEEEccCCCEEEEEeC-------------CCCEEEEEEeeCCCC-----CceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 251 GVELSADESFVIVAET-------------MSSRVHRYYLKGPKQ-----GKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 251 gia~~~dg~~lyva~~-------------~~~~I~~~~~~g~~~-----~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
.|++++|| .|||+.. ..++|+|++.+|.-. ...++++.++.. |.||++|++|.||++...
T Consensus 144 ~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g 221 (347)
T 3das_A 144 RIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFG 221 (347)
T ss_dssp CEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECC
T ss_pred cccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecC
Confidence 89999999 5999952 357999999886411 124677765544 999999999999999976
Q ss_pred C
Q psy4771 313 P 313 (337)
Q Consensus 313 ~ 313 (337)
.
T Consensus 222 ~ 222 (347)
T 3das_A 222 Q 222 (347)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-10 Score=99.50 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=130.5
Q ss_pred CeEE-EEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECC-CcEEEEEcC--CCeE
Q psy4771 73 GDLY-MGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAY-FGLYKVNVT--TGQT 144 (337)
Q Consensus 73 g~ly-~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~-~gv~~vd~~--~g~~ 144 (337)
..+| ++..+++|..|+. ++...+..+ .....|.+++++++|+ ||++... ..|..++.+ +++.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV----------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL 74 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE----------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE----------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce
Confidence 4677 5577888888864 333333222 2235689999999995 8888765 345554444 6766
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcc----c-ccceeeeccccCC---------CCCCCCccEEEcCCCc-EEEEc
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTG----Q-TEQLISMDTEIDG---------AKPQIPNSVTVDSDGM-VYWSD 209 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~-~~~v~~~~~~~~~---------~~~~~pn~v~vd~~G~-lyvtd 209 (337)
+.+... ...+ .|..++++++|+.+ . .+.|..++.. ++ .....+++++++++|+ +|+++
T Consensus 75 ~~~~~~--~~~~----~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 75 TFAAES--ALPG----SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp EEEEEE--ECSS----CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred eecccc--ccCC----CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccccccCCCCceEEEECCCCCEEEEec
Confidence 555432 1122 38899999999965 2 2334444331 11 1234689999999996 88776
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCC-CeeEEE------eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC--CC
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKT-KKNKVL------IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG--PK 280 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~-~~~~~~------~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g--~~ 280 (337)
.. .+.|..+|..+ ++.... ......|++++++|||+.+|++....++|..++++. +.
T Consensus 148 ~~--------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 148 LK--------------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp GG--------------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred CC--------------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 43 24677777655 544321 122357899999999999999998889999999853 21
Q ss_pred CCceeeeecCCC------CCCCceeECCCCC-EEEEec
Q psy4771 281 QGKSEVFIDGLP------GLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 281 ~~~~~~~~~~~~------g~Pdgi~~d~dG~-l~va~~ 311 (337)
......+.. .+ ..|.+++++++|+ +|++..
T Consensus 214 ~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 214 IECVQTLDM-MPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp CEEEEEEEC-SCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEeeccc-cCccccccCCccceEECCCCCEEEEEec
Confidence 111122211 11 1344699999996 776664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=113.16 Aligned_cols=160 Identities=12% Similarity=0.138 Sum_probs=104.4
Q ss_pred cCCcceEEECCCCc-EEEEECCCcEEEEEcCCCeEE-EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 111 CGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTE-QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g~~~-~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
+..|.+|+++++|+ |||++....|++++.+ +... .+... |. + ..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-----------~~-v---------------------~~ 62 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-----------PD-V---------------------WA 62 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-----------CC-C---------------------CC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-----------cc-c---------------------cc
Confidence 46799999999999 9999975568889875 4332 12210 00 0 00
Q ss_pred CCCCCCccEEEcC----CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCC-----eeEEEec-------cccceeeE
Q psy4771 189 AKPQIPNSVTVDS----DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK-----KNKVLIA-------NLHFANGV 252 (337)
Q Consensus 189 ~~~~~pn~v~vd~----~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~-----~~~~~~~-------~~~~p~gi 252 (337)
.....+++|++++ +|.||+++..... ++ ....+|++++.+.+ ..+++.. ..+++++|
T Consensus 63 ~g~~g~~gia~~pdf~~~g~lYv~~~~~~~-~g------~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l 135 (353)
T 2g8s_A 63 HGQGGLLDVVLAPDFAQSRRIWLSYSEVGD-DG------KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRL 135 (353)
T ss_dssp STTCSEEEEEECTTHHHHCEEEEEEEEECS-SS------CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCE
T ss_pred CCCCCceeEEECCCCCCCCEEEEEEeCCCC-CC------CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccE
Confidence 0234579999998 5889999764210 00 00236777655432 2233332 23568899
Q ss_pred EEccCCCEEEEEeCC-------------CCEEEEEEeeCCCC----------CceeeeecCCCCCCCceeECC-CCCEEE
Q psy4771 253 ELSADESFVIVAETM-------------SSRVHRYYLKGPKQ----------GKSEVFIDGLPGLPDNVKRDS-KGNFLV 308 (337)
Q Consensus 253 a~~~dg~~lyva~~~-------------~~~I~~~~~~g~~~----------~~~~~~~~~~~g~Pdgi~~d~-dG~l~v 308 (337)
++++|| .|||+... .++|+|++.+|.-. ...++++.++.. |.||++|+ +|+||+
T Consensus 136 ~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rn-p~gl~~d~~~g~l~~ 213 (353)
T 2g8s_A 136 VFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRN-PQGMAMNPWSNALWL 213 (353)
T ss_dssp EECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSE-EEEEEEETTTTEEEE
T ss_pred EECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcC-ccceEEECCCCCEEE
Confidence 999999 79999643 35899999886410 134566655443 99999999 799999
Q ss_pred EecCC
Q psy4771 309 SLVCP 313 (337)
Q Consensus 309 a~~~~ 313 (337)
+....
T Consensus 214 ~d~g~ 218 (353)
T 2g8s_A 214 NEHGP 218 (353)
T ss_dssp EEECS
T ss_pred EecCC
Confidence 99764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=101.05 Aligned_cols=178 Identities=12% Similarity=0.107 Sum_probs=114.3
Q ss_pred CCcceEEECCCCc-EEEEECCCcEEEEEcC-CCeEEEEeccccccCCCCCCCCCceeeCCCCCc--c--c----------
Q psy4771 112 GRPLGIKFDKNGA-LHVADAYFGLYKVNVT-TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQT--G--Q---------- 175 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~-~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~--~--~---------- 175 (337)
..|.+++++++|+ ||+++.. .|..++.+ +|+...+... ...| .|+.+++++||+. + .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~--~~~g----~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH--PIGG----HPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE--ECCS----SGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe--ecCC----CCccEEECCCCCEEEEEEecCCcceeccc
Confidence 4689999999995 8888765 67667664 6766544321 1123 2788999999983 3 1
Q ss_pred -----ccceeeeccccCC-----------CCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC-CC
Q psy4771 176 -----TEQLISMDTEIDG-----------AKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TK 237 (337)
Q Consensus 176 -----~~~v~~~~~~~~~-----------~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~ 237 (337)
.+.+..+....++ .....++++++++||+ +|+++... +.|+.|+.+ ++
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~--------------~~v~~~~~~~~g 178 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA--------------NKLWTHRKLASG 178 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--------------TEEEEEEECTTS
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC--------------CEEEEEEECCCC
Confidence 1223332211111 1235689999999997 88887642 266666665 56
Q ss_pred eeEEEe--c---cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce----eeeecCCC----C---------CC
Q psy4771 238 KNKVLI--A---NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS----EVFIDGLP----G---------LP 295 (337)
Q Consensus 238 ~~~~~~--~---~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~----~~~~~~~~----g---------~P 295 (337)
+...+. . ....|.+++++|||++||+++...++|.+|+++.. .+.. ..+. .++ + .|
T Consensus 179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFP-LIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEE-SSCTTCCCBCTTTSSBSEE
T ss_pred CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEE-cCCCCcCCccccccccccc
Confidence 543221 1 24579999999999999999988889999987631 1111 1111 121 1 37
Q ss_pred Ccee-ECCCCC-EEEEecC
Q psy4771 296 DNVK-RDSKGN-FLVSLVC 312 (337)
Q Consensus 296 dgi~-~d~dG~-l~va~~~ 312 (337)
.+++ +++||+ +|++...
T Consensus 257 ~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 257 ADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEEECTTSSEEEEEEEE
T ss_pred ccEEEECCCCCEEEEECCC
Confidence 7899 999997 7887643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-10 Score=109.00 Aligned_cols=223 Identities=10% Similarity=-0.022 Sum_probs=132.0
Q ss_pred eCCeEE-EEecC----cEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC----------CcE
Q psy4771 71 HKGDLY-MGVDG----GHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY----------FGL 134 (337)
Q Consensus 71 ~~g~ly-~d~~~----g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~----------~gv 134 (337)
+...+| ++... ++|..+|..+.+.+..+ +....| |+++++|| .|||++.. +.|
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I----------~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMT----------DGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE----------EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE----------ECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 456789 55543 79999998554444333 333569 99999999 89999842 349
Q ss_pred EEEEcCCCeEEEEeccc--ccc-CCCCCCCCCceeeCCCCCcc-----c-ccceeeeccccCCC----CC-----CCCcc
Q psy4771 135 YKVNVTTGQTEQLISMD--TEI-DGAKPQIPNSVTVDSDGQTG-----Q-TEQLISMDTEIDGA----KP-----QIPNS 196 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~--~~~-~g~~~~~P~~v~~~~~g~~~-----~-~~~v~~~~~~~~~~----~~-----~~pn~ 196 (337)
..||..++++..-+... ... .|. .|+++++++||+++ . .+.|..++..-... +. ..|.+
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~---~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g 228 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGT---YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPAS 228 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSC---CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred EEEECCCCcEEEEEECCCccccccCC---CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCC
Confidence 99999988765443210 000 122 59999999999987 2 34666666221110 11 11223
Q ss_pred ----EEEcCCCcEEEEcCCCCc-----------------------cCceeeeeecCCccEEEEcCCCCeeEEEec-----
Q psy4771 197 ----VTVDSDGMVYWSDSSTKY-----------------------KSGLFEGLTSGSGRLIQYNPKTKKNKVLIA----- 244 (337)
Q Consensus 197 ----v~vd~~G~lyvtd~~~~~-----------------------~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~----- 244 (337)
+++.++|++.+.+..... .++-........|.|+.+|..++.......
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~ 308 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT 308 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence 667778874433332110 000000111234677888876554332211
Q ss_pred -----cccceee---EEEccCCCEEEEEeC---------CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC--
Q psy4771 245 -----NLHFANG---VELSADESFVIVAET---------MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-- 305 (337)
Q Consensus 245 -----~~~~p~g---ia~~~dg~~lyva~~---------~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-- 305 (337)
....|.| +++++|++++||++. ..+.|.++|....+.. ..+ . ++..|++|++++||+
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv--~~I-~-vg~~P~gia~spDg~~~ 384 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI--NKI-E-LGHEIDSINVSQDAEPL 384 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEE-E-EEEEECEEEECCSSSCE
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE--EEE-E-CCCCcCeEEEccCCCEE
Confidence 0123555 899999999999974 2468999997543211 111 1 234599999999998
Q ss_pred EEEEec
Q psy4771 306 FLVSLV 311 (337)
Q Consensus 306 l~va~~ 311 (337)
+|++.+
T Consensus 385 lyv~n~ 390 (426)
T 3c75_H 385 LYALSA 390 (426)
T ss_dssp EEEEET
T ss_pred EEEEcC
Confidence 666664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-11 Score=112.83 Aligned_cols=169 Identities=15% Similarity=0.227 Sum_probs=108.7
Q ss_pred ccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 110 QCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
.+..|.+|+++++|+|||++...+ |++++..+|+...+......... .
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~-------------------------------~ 73 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND-------------------------------A 73 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC-------------------------------T
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccc-------------------------------c
Confidence 356799999999999999997654 99998776776655431100000 0
Q ss_pred CCCCCCccEEEcC----CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCC--e---eEEEec-----cccceeeEEE
Q psy4771 189 AKPQIPNSVTVDS----DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK--K---NKVLIA-----NLHFANGVEL 254 (337)
Q Consensus 189 ~~~~~pn~v~vd~----~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~--~---~~~~~~-----~~~~p~gia~ 254 (337)
.....+.+|++++ +|.||++++...... .........+|+|++.+.+ + .+++.+ ..+++++|++
T Consensus 74 ~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~--~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f 151 (454)
T 1cru_A 74 DGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS--TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVI 151 (454)
T ss_dssp TSSCSEEEEEECTTTTTSCEEEEEEEEECTTC----CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEE
T ss_pred CCCCceeEEEECCCcCcCCEEEEEEeccccCC--CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeE
Confidence 0124567999998 678999986310000 0000000236777664321 1 233332 3467899999
Q ss_pred ccCCCEEEEEeCC--------------------------------CCEEEEEEeeCCCC-C-------ceeeeecCCCCC
Q psy4771 255 SADESFVIVAETM--------------------------------SSRVHRYYLKGPKQ-G-------KSEVFIDGLPGL 294 (337)
Q Consensus 255 ~~dg~~lyva~~~--------------------------------~~~I~~~~~~g~~~-~-------~~~~~~~~~~g~ 294 (337)
++||+ |||+... .++|+|++.+|.-. . ..++++.++..
T Consensus 152 ~pDG~-Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RN- 229 (454)
T 1cru_A 152 GPDQK-IYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRN- 229 (454)
T ss_dssp CTTSC-EEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSE-
T ss_pred CCCCe-EEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCC-
Confidence 99994 9998542 36899999876411 1 34677765544
Q ss_pred CCceeECCCCCEEEEecCC
Q psy4771 295 PDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 295 Pdgi~~d~dG~l~va~~~~ 313 (337)
|.||++|++|.||++....
T Consensus 230 p~gla~dp~G~L~~~d~g~ 248 (454)
T 1cru_A 230 PQGLAFTPNGKLLQSEQGP 248 (454)
T ss_dssp EEEEEECTTSCEEEEEECS
T ss_pred cceEEECCCCCEEEEecCC
Confidence 9999999999999999764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-10 Score=99.28 Aligned_cols=208 Identities=8% Similarity=-0.012 Sum_probs=134.0
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~ 151 (337)
++.|+++..+++|+.++..+.+.+.++.. +....+++++++++|+++++ ..++|+.+|+++..+..+...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~- 74 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--------EKGWECNSVAATKAGEILFS-YSKGAKMITRDGRELWNIAAP- 74 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEEC--------CTTCCCCEEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECC-
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCC--------CccCCCcCeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCC-
Confidence 44566888899999998744333333321 11135889999999999995 346799999954444444321
Q ss_pred cccCCCCCCCCCceeeCCCCCcc----c-ccceeeeccccC-----------CCCCCCCccEEEcCCCcEEEEcCCCCcc
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTG----Q-TEQLISMDTEID-----------GAKPQIPNSVTVDSDGMVYWSDSSTKYK 215 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~----~-~~~v~~~~~~~~-----------~~~~~~pn~v~vd~~G~lyvtd~~~~~~ 215 (337)
.+. ....+.+.++|+++ . ...++.++...+ ...+..+.+++++++|++++++..
T Consensus 75 ---~~~---~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---- 144 (276)
T 3no2_A 75 ---AGC---EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---- 144 (276)
T ss_dssp ---TTC---EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----
T ss_pred ---CCc---cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----
Confidence 000 12346677888887 2 335554442110 012345778899999999888865
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee-CCCCCceeeeecCCC--
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK-GPKQGKSEVFIDGLP-- 292 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~-g~~~~~~~~~~~~~~-- 292 (337)
+++|+.+|++ |+...-......|.++++.++|+ ++|++...++|..++.+ |...-+.. ...++
T Consensus 145 ----------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~ 210 (276)
T 3no2_A 145 ----------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVN--ANDIEGV 210 (276)
T ss_dssp ----------TTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEE--GGGSBSC
T ss_pred ----------CCEEEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEec--CCCCCCc
Confidence 3589999988 65433333335688899999885 77888888899999987 43111111 01111
Q ss_pred --CCCCceeECCCCCEEEEecCC
Q psy4771 293 --GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 --g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..|.++++.++|++||+.+.+
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECT
T ss_pred cccccccceEcCCCCEEEEeccC
Confidence 237899999999999999755
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-09 Score=100.16 Aligned_cols=180 Identities=15% Similarity=0.208 Sum_probs=128.8
Q ss_pred CccEEEe-eCC-eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEE
Q psy4771 64 GPEAVVK-HKG-DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVN 138 (337)
Q Consensus 64 ~P~~i~~-~~g-~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd 138 (337)
.|.++++ .++ .+| ++..++.|..|+..+.+.+..+ .....+.+++++++| .||++... ..|..+|
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----------PAGSSPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----------ECCCCccceEECCCCCEEEEEECCCCEEEEEE
Confidence 4778888 444 576 6778999999997333322222 112368899999999 57888765 4499999
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSG 217 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~ 217 (337)
.++++...... ....+.+++++++|+ +|++...
T Consensus 103 ~~~~~~~~~~~----------------------------------------~~~~~~~~~~s~dg~~l~~~~~~------ 136 (391)
T 1l0q_A 103 TTSNTVAGTVK----------------------------------------TGKSPLGLALSPDGKKLYVTNNG------ 136 (391)
T ss_dssp TTTTEEEEEEE----------------------------------------CSSSEEEEEECTTSSEEEEEETT------
T ss_pred CCCCeEEEEEe----------------------------------------CCCCcceEEECCCCCEEEEEeCC------
Confidence 98887655442 122468999999987 7777654
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCc
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdg 297 (337)
++.|+.+|..+++..........+.++++++|++.||++....++|..+++... ....... ....+.+
T Consensus 137 --------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~ 204 (391)
T 1l0q_A 137 --------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSG 204 (391)
T ss_dssp --------TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEE
T ss_pred --------CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccc
Confidence 358999998888776666556678999999999999999988899999997543 2111122 2335788
Q ss_pred eeECCCCC-EEEEec
Q psy4771 298 VKRDSKGN-FLVSLV 311 (337)
Q Consensus 298 i~~d~dG~-l~va~~ 311 (337)
++++++|+ +|++..
T Consensus 205 ~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEECTTSSEEEEEEE
T ss_pred eEECCCCCEEEEEec
Confidence 99999997 777763
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=101.17 Aligned_cols=222 Identities=13% Similarity=0.106 Sum_probs=127.5
Q ss_pred cCccEEEe-eCC-eEEEEecCcEEEEEe---CCceeEEEecCccccCccccCccCCcceEEECCCCc-EE--EEE-----
Q psy4771 63 HGPEAVVK-HKG-DLYMGVDGGHILKLS---GGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LH--VAD----- 129 (337)
Q Consensus 63 ~~P~~i~~-~~g-~ly~d~~~g~I~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-ly--Vad----- 129 (337)
..|.++++ .++ .||+...+ .|..|+ .++...+... ...+.|.+++++++|+ || +++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~----------~~~g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH----------PIGGHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE----------ECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe----------ecCCCCccEEECCCCCEEEEEEecCCcce
Confidence 46889998 454 58855555 677665 3443322111 1113488899999996 33 443
Q ss_pred --C-----CCc-EEEEEcC-CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCC-------
Q psy4771 130 --A-----YFG-LYKVNVT-TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG------- 188 (337)
Q Consensus 130 --~-----~~g-v~~vd~~-~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~------- 188 (337)
. ..+ +..++.+ .|+............+. .|+.+++++||+.+ ..+.|..++....+
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENT---GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTC---CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCC---cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee
Confidence 1 222 4444443 24433222100000111 48889999999865 23455544422011
Q ss_pred ---C-CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE----Ee---ccc---c------
Q psy4771 189 ---A-KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV----LI---ANL---H------ 247 (337)
Q Consensus 189 ---~-~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~----~~---~~~---~------ 247 (337)
. ....|.++++++||+ +|+++.... .=.++.+|.++++... +. .++ .
T Consensus 186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGN------------RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEEETTTT------------EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred EecCCCCCCCCEeEECCCCCEEEEEECCCC------------eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence 0 134689999999996 888775321 0145556665565321 11 111 2
Q ss_pred -ceeeEE-EccCCCEEEEEeCCCC-----EEEEEEeeCCCCCceee---eecCCCCCCCceeECC---CCC-EEEEecC
Q psy4771 248 -FANGVE-LSADESFVIVAETMSS-----RVHRYYLKGPKQGKSEV---FIDGLPGLPDNVKRDS---KGN-FLVSLVC 312 (337)
Q Consensus 248 -~p~gia-~~~dg~~lyva~~~~~-----~I~~~~~~g~~~~~~~~---~~~~~~g~Pdgi~~d~---dG~-l~va~~~ 312 (337)
.+.+++ ++|||++||+++...+ +|.+|+++.. +.... +.......|.++++++ ||+ +|++...
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~--g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC--GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT--SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC--CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 588999 9999999999997766 8999998621 22221 2222233588999999 786 7777654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-09 Score=104.30 Aligned_cols=222 Identities=10% Similarity=0.017 Sum_probs=141.5
Q ss_pred CccEEEe--eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECC----CC-cEEEEECC-Cc
Q psy4771 64 GPEAVVK--HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK----NG-ALHVADAY-FG 133 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~----~G-~lyVad~~-~g 133 (337)
.|.++++ ++..+|+...++.|..|+. .+.+.+..+ .....|.++++++ +| .||+++.. ..
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i----------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI----------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE----------ECCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE----------ecCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 3788878 4567897777899999998 554443332 2335699999999 98 68888743 45
Q ss_pred EEEEEcCCCeEEEEecccc-ccCCCC---CCCCCceeeCCCCCcc-----cccceeeeccccCC-------CCCCCCccE
Q psy4771 134 LYKVNVTTGQTEQLISMDT-EIDGAK---PQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG-------AKPQIPNSV 197 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~-~~~g~~---~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~-------~~~~~pn~v 197 (337)
|..+|..+++......... ...+.. ...+..++++++++.+ .++.|..++..-.. ....+|.++
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~ 329 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG 329 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc
Confidence 8889988877655443110 011100 0124568888877664 33455544421100 023579999
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee---eEEE-ccCCCEEEEEeC-CCCEE
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN---GVEL-SADESFVIVAET-MSSRV 271 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~---gia~-~~dg~~lyva~~-~~~~I 271 (337)
+++++|+ +|++... ++.|..+|.+++++.........|+ |+.+ +|+++.+|++.. +.+.|
T Consensus 330 ~~spdg~~l~va~~~--------------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 330 GWDSSHRYFMTAANN--------------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EECTTSCEEEEEEGG--------------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred eECCCCCEEEEEecC--------------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 9999998 7777654 2378889999988765554433443 5554 578668999875 56899
Q ss_pred EEEEeeCCCC----Cc-eeeeecCCCCCCCceeECCCCC-EEEEe
Q psy4771 272 HRYYLKGPKQ----GK-SEVFIDGLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 272 ~~~~~~g~~~----~~-~~~~~~~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
.+++.+..+. .+ ...+. ...+.+..++++++|+ |||+.
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECC
T ss_pred EEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEec
Confidence 9999875211 12 22222 2223367799999996 89886
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=100.25 Aligned_cols=224 Identities=16% Similarity=0.121 Sum_probs=125.9
Q ss_pred cCccEEEe--eCCeEEEEe----------cCcEEEEEeCCceeEEEec--CccccCccccCccCCcceEEECCCC-cEEE
Q psy4771 63 HGPEAVVK--HKGDLYMGV----------DGGHILKLSGGKLVPVVKL--GKDCYGFKYEQQCGRPLGIKFDKNG-ALHV 127 (337)
Q Consensus 63 ~~P~~i~~--~~g~ly~d~----------~~g~I~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyV 127 (337)
..| .+++ ++..+|+.. .++.|..|+..+.+.+..+ +.. .......|.+++++++| .|||
T Consensus 51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~-----~~~~g~~p~~i~~spdg~~l~v 124 (361)
T 2oiz_A 51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK-----RVQGLNYDGLFRQTTDGKFIVL 124 (361)
T ss_dssp EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT-----BCCBCCCGGGEEECTTSSEEEE
T ss_pred CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc-----ccccCCCcceEEECCCCCEEEE
Confidence 368 8888 456799543 3567999987544333222 110 00123569999999999 7899
Q ss_pred EECC--CcEEEEEcCCCeEEEE-eccccccCCC--CCCCCCc----eeeCCCCCcc-----ccccee-------------
Q psy4771 128 ADAY--FGLYKVNVTTGQTEQL-ISMDTEIDGA--KPQIPNS----VTVDSDGQTG-----QTEQLI------------- 180 (337)
Q Consensus 128 ad~~--~gv~~vd~~~g~~~~l-~~~~~~~~g~--~~~~P~~----v~~~~~g~~~-----~~~~v~------------- 180 (337)
++.. ..|..+|.+++++... ... .+. ....|.+ ++..++|+++ ..+.+.
T Consensus 125 ~n~~~~~~v~v~d~~~~~~~~~~i~~----~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 125 QNASPATSIGIVDVAKGDYVEDVTAA----AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEGGG----TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred ECCCCCCeEEEEECCCCcEEEEEecC----CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 9753 3499999988876543 221 110 0012322 5556666554 112221
Q ss_pred ------------------------eeccccCC------------------CCCCCCccEEEcCCC-cEEEEcC-CCCccC
Q psy4771 181 ------------------------SMDTEIDG------------------AKPQIPNSVTVDSDG-MVYWSDS-STKYKS 216 (337)
Q Consensus 181 ------------------------~~~~~~~~------------------~~~~~pn~v~vd~~G-~lyvtd~-~~~~~~ 216 (337)
.++..-.. .....+..++++++| ++|++.. ....
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~-- 278 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE-- 278 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT--
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc--
Confidence 11100000 000111225666654 3665542 1000
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPD 296 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pd 296 (337)
+ ...+..+.|+.+|.++++...-..... |.+|+++|||++||+++. +.|.+|+.+..++.....+. .....|.
T Consensus 279 ~---~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~-~~G~~P~ 351 (361)
T 2oiz_A 279 G---THKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIE-GAAEASL 351 (361)
T ss_dssp T---CTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEET-TSCSSEE
T ss_pred c---cccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEec-cCCCCcE
Confidence 0 000123579999999887654444444 999999999999999985 89999987643112222221 2334699
Q ss_pred ceeECCCCC
Q psy4771 297 NVKRDSKGN 305 (337)
Q Consensus 297 gi~~d~dG~ 305 (337)
+|+++++|+
T Consensus 352 ~~~~~p~G~ 360 (361)
T 2oiz_A 352 QVQFHPVGG 360 (361)
T ss_dssp EEEECCCSC
T ss_pred EEEecCCCC
Confidence 999999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-09 Score=97.56 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=126.4
Q ss_pred CccEEEe-e-CCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCc-EEEEE
Q psy4771 64 GPEAVVK-H-KGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFG-LYKVN 138 (337)
Q Consensus 64 ~P~~i~~-~-~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~g-v~~vd 138 (337)
.+.++++ . +..+| ++..++.|..|+..+.+.+..+ .....+.+++++++|+ ||++....+ |..+|
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~----------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV----------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE----------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 5777888 3 45577 6667799999987433322222 1124588999999995 778876544 88899
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSG 217 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~ 217 (337)
..+++...... ....+.+++++++|+ +|++...
T Consensus 145 ~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~dg~~l~~~~~~------ 178 (391)
T 1l0q_A 145 TVTKAVINTVS----------------------------------------VGRSPKGIAVTPDGTKVYVANFD------ 178 (391)
T ss_dssp TTTTEEEEEEE----------------------------------------CCSSEEEEEECTTSSEEEEEETT------
T ss_pred CCCCcEEEEEe----------------------------------------cCCCcceEEECCCCCEEEEEeCC------
Confidence 88877655442 123468999999986 7777654
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC--CCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET--MSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~--~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
+|.|+.+|..+++..........+.++++++||+.||++.. ..+.|..+++... ....... ....|
T Consensus 179 --------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~ 246 (391)
T 1l0q_A 179 --------SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIP-VGPDP 246 (391)
T ss_dssp --------TTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEE-CCSSE
T ss_pred --------CCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEEEEe-cCCCc
Confidence 35899999988877666656667899999999999999986 6789999997543 1111122 12347
Q ss_pred CceeECCCCC-EEEEec
Q psy4771 296 DNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 296 dgi~~d~dG~-l~va~~ 311 (337)
..++++++|+ +|++..
T Consensus 247 ~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 247 AGIAVTPDGKKVYVALS 263 (391)
T ss_dssp EEEEECTTSSEEEEEET
T ss_pred cEEEEccCCCEEEEEcC
Confidence 8899999996 777754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-09 Score=94.08 Aligned_cols=229 Identities=13% Similarity=0.067 Sum_probs=140.3
Q ss_pred CccEEEe-eCC-eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEE----------
Q psy4771 64 GPEAVVK-HKG-DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVAD---------- 129 (337)
Q Consensus 64 ~P~~i~~-~~g-~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad---------- 129 (337)
.|.++++ .++ .+| ++..+++|..|+..+.+.+..+..... ......|.+++++++| .||+++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----EERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----TEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----ccccccccceEECCCCCEEEEEecccccccccc
Confidence 3888888 454 677 677788999998633222221210000 0011268899999999 788885
Q ss_pred --CCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc--cccceeeeccccCC-----CCCCCCccEEEc
Q psy4771 130 --AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEIDG-----AKPQIPNSVTVD 200 (337)
Q Consensus 130 --~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~~~-----~~~~~pn~v~vd 200 (337)
....|..+|.++++...... . +. .|..++++++|+.+ ..+.+..++..-.. .....+..++++
T Consensus 111 ~~~~~~i~v~d~~~~~~~~~~~----~-~~---~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s 182 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRRKAFE----A-PR---QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEE----C-CS---SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCC
T ss_pred cccCceEEEEECCCCcEEEEEe----C-CC---CcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCCceeC
Confidence 23569999998887655443 1 22 37889999999966 44455555422100 012235677788
Q ss_pred CCCc-EEEEcCCCCccCceeeeeecCC----------ccEEEEcCCCCeeEEE--eccccceeeEEEccCCCEEEEEeCC
Q psy4771 201 SDGM-VYWSDSSTKYKSGLFEGLTSGS----------GRLIQYNPKTKKNKVL--IANLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 201 ~~G~-lyvtd~~~~~~~~~~~~~~~~~----------G~v~~~d~~~~~~~~~--~~~~~~p~gia~~~dg~~lyva~~~ 267 (337)
++|. +|++......-...+. ..... ..|+.+|.++++.... ......++++++++||+.||++
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--- 258 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFY-TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--- 258 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEE-EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---
T ss_pred CCccEEeeeccCCCceeeeee-ccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---
Confidence 8876 7766544221000000 01111 1689999998876422 1223468899999999999999
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
.++|.+++++..+ ...... .+..|.+++++++|+ +|++...
T Consensus 259 ~~~v~~~d~~~~~---~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 259 YNVLESFDLEKNA---SIKRVP-LPHSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp ESEEEEEETTTTE---EEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred CCeEEEEECCCCc---Ccceec-CCCceeeEEECCCCCEEEEEcCC
Confidence 4799999975432 111122 234589999999997 8887543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-10 Score=102.68 Aligned_cols=240 Identities=8% Similarity=-0.106 Sum_probs=133.8
Q ss_pred CeEE-EEecCc----EEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC----------CcEEE
Q psy4771 73 GDLY-MGVDGG----HILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY----------FGLYK 136 (337)
Q Consensus 73 g~ly-~d~~~g----~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~----------~gv~~ 136 (337)
..+| ++...+ +|..+|..+.+.+..+ +....| |++++++| .+||++.+ +.|..
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i----------~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsv 100 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS----------LGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEV 100 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEE----------EECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEE----------eCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 4677 555555 8889998554444333 334568 99999998 99999842 33999
Q ss_pred EEcCCCeEEEEeccc--cc-cCCCCCCCCCceeeCCCCCcc-----c-ccceee--ecccc----C--CCCCCCCcc---
Q psy4771 137 VNVTTGQTEQLISMD--TE-IDGAKPQIPNSVTVDSDGQTG-----Q-TEQLIS--MDTEI----D--GAKPQIPNS--- 196 (337)
Q Consensus 137 vd~~~g~~~~l~~~~--~~-~~g~~~~~P~~v~~~~~g~~~-----~-~~~v~~--~~~~~----~--~~~~~~pn~--- 196 (337)
||+.++++..-+... .. ..|. .|+.+++++||+++ . .+.+.. ++..- . +...-.|.+
T Consensus 101 iD~~T~~vv~~I~v~~~~~~~~g~---~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~ 177 (368)
T 1mda_H 101 FDPVTFLPIADIELPDAPRFSVGP---RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT 177 (368)
T ss_dssp ECTTTCCEEEEEEETTSCSCCBSC---CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE
T ss_pred EECCCCCEEEEEECCCccccccCC---CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeE
Confidence 999988765544210 00 0112 59999999999987 1 234555 44321 0 000011222
Q ss_pred -EEEcCCCcEEEEcCCC-----C-cc------------------CceeeeeecCCccEEEEcCCCCeeEEEec-------
Q psy4771 197 -VTVDSDGMVYWSDSST-----K-YK------------------SGLFEGLTSGSGRLIQYNPKTKKNKVLIA------- 244 (337)
Q Consensus 197 -v~vd~~G~lyvtd~~~-----~-~~------------------~~~~~~~~~~~G~v~~~d~~~~~~~~~~~------- 244 (337)
++..++|++.+.|... . .. +... +.... |.|+.+|..+++.+....
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~-~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~ 255 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML-VWAVA-SSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE-EECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE-EEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence 3333444422222221 0 00 0000 01111 678888876543322211
Q ss_pred ---cccceee---EEEccCCCEEEEEeC---C-----CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEE
Q psy4771 245 ---NLHFANG---VELSADESFVIVAET---M-----SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVS 309 (337)
Q Consensus 245 ---~~~~p~g---ia~~~dg~~lyva~~---~-----~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va 309 (337)
....|.| +++++|++++||+.. + .+.+.++|....+.. .. +. .+..|.||++++||+ +|++
T Consensus 256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv--~~-i~-vg~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS--GP-IS-NGHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE--EC-CE-EEEEECEEEECCSSSCEEEE
T ss_pred ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE--EE-EE-CCCCcceEEECCCCCEEEEE
Confidence 1234666 899999999999865 3 356778887643211 11 11 223599999999997 8999
Q ss_pred ec-CC----CCCchhhccccCCCccccc
Q psy4771 310 LV-CP----VEQPSEQAGNIRDPAGAQA 332 (337)
Q Consensus 310 ~~-~~----~~~p~~~~~~~~~p~~~~~ 332 (337)
.. .. --...-.+.+..+|-...|
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred ccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 97 33 1123344555555544433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-09 Score=92.46 Aligned_cols=172 Identities=15% Similarity=0.051 Sum_probs=115.2
Q ss_pred cEEEeeCCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 66 EAVVKHKGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 66 ~~i~~~~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
+++.++++.|| +...+|+|.++|. ++..... ++ ......|++++.+ +||++++..+ ++.+|+++
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~----------~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL----------GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC----------TTCCEEEEEECSS-CEEEEESSSCEEEEEETTT
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC----------CCcceeEEEEeCC-EEEEEEccCCEEEEEECCc
Confidence 67888889999 7777788888887 3432221 22 1123467888643 9999987655 99999988
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
.++..-+.. . ....+++.|. ++||++|. +
T Consensus 126 l~~~~ti~~----~------------------------------------~eGwGLt~Dg-~~L~vSdG-s--------- 154 (268)
T 3nok_A 126 PQRERTTRY----S------------------------------------GEGWGLCYWN-GKLVRSDG-G--------- 154 (268)
T ss_dssp TEEEEEEEC----S------------------------------------SCCCCEEEET-TEEEEECS-S---------
T ss_pred CcEEEEEeC----C------------------------------------CceeEEecCC-CEEEEECC-C---------
Confidence 776544431 1 1134566442 46999984 2
Q ss_pred eecCCccEEEEcCCCCeeEEEe----c--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec------
Q psy4771 222 LTSGSGRLIQYNPKTKKNKVLI----A--NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID------ 289 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~~~~~----~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~------ 289 (337)
++|+.+|+++.+...-. . .+.++|.+.+. || .||++....+.|.++|++.++ ..-.++
T Consensus 155 -----~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~---V~~~Idl~~L~~ 224 (268)
T 3nok_A 155 -----TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGT---VVGVIDASALTR 224 (268)
T ss_dssp -----SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCB---EEEEEECHHHHH
T ss_pred -----CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCc---EEEEEECCCCcc
Confidence 38999999987653322 1 24467888877 67 699999999999999986432 211111
Q ss_pred -------CCCCCCCceeECCCC-CEEEEe
Q psy4771 290 -------GLPGLPDNVKRDSKG-NFLVSL 310 (337)
Q Consensus 290 -------~~~g~Pdgi~~d~dG-~l~va~ 310 (337)
.....|.|||.|+++ +|||+-
T Consensus 225 ~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 225 AVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp HHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 011358999999976 599976
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-10 Score=105.80 Aligned_cols=176 Identities=12% Similarity=0.234 Sum_probs=111.9
Q ss_pred CceeccCcccCccEEEe-eCCeEEEEecC-cEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECC----CCcE
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLYMGVDG-GHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK----NGAL 125 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly~d~~~-g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~----~G~l 125 (337)
++.++++ +..|.+|++ .+|.+|+.... ++|++++. +....+..+..... .....+.+.||++++ +|.|
T Consensus 19 ~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~---~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 19 KKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN---DADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp EEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC---CTTSSCSEEEEEECTTTTTSCEE
T ss_pred EEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc---ccCCCCceeEEEECCCcCcCCEE
Confidence 4555554 678999999 78899955555 58999975 44444444432100 001235688999999 6799
Q ss_pred EEEECC-------------CcEEEEEcCCC--eE---EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 126 HVADAY-------------FGLYKVNVTTG--QT---EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 126 yVad~~-------------~gv~~vd~~~g--~~---~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
||+.+. ..|++++.+.+ .+ +.+... ..
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~---~p-------------------------------- 139 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG---LP-------------------------------- 139 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE---EC--------------------------------
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEc---CC--------------------------------
Confidence 999853 24777765322 22 222210 00
Q ss_pred CCCCCCCccEEEcCCCcEEEEcCCCCccC--ce----------------eeeeecCCccEEEEcCCCC-----------e
Q psy4771 188 GAKPQIPNSVTVDSDGMVYWSDSSTKYKS--GL----------------FEGLTSGSGRLIQYNPKTK-----------K 238 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~lyvtd~~~~~~~--~~----------------~~~~~~~~G~v~~~d~~~~-----------~ 238 (337)
......+++|++++||+|||+........ .. ..-.....|+|+|+++++. .
T Consensus 140 ~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~ 219 (454)
T 1cru_A 140 SSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVV 219 (454)
T ss_dssp CCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEE
T ss_pred CCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCc
Confidence 11234689999999999999854321000 00 0001123689999999865 4
Q ss_pred eEEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 239 NKVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 239 ~~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
.++...++..|.|++++++| .||++|.+.+
T Consensus 220 ~ei~a~G~RNp~gla~dp~G-~L~~~d~g~~ 249 (454)
T 1cru_A 220 SHIYTLGHRNPQGLAFTPNG-KLLQSEQGPN 249 (454)
T ss_dssp CSEEEBCCSEEEEEEECTTS-CEEEEEECSS
T ss_pred ceEEEECCCCcceEEECCCC-CEEEEecCCC
Confidence 56778899999999999987 5999997654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=102.20 Aligned_cols=221 Identities=12% Similarity=0.042 Sum_probs=129.7
Q ss_pred CccEEEe--eCCeEEEEe----------cCcEEEEEeCCceeEEEec--CccccCccccCccCCcceEEECCCC-cEEEE
Q psy4771 64 GPEAVVK--HKGDLYMGV----------DGGHILKLSGGKLVPVVKL--GKDCYGFKYEQQCGRPLGIKFDKNG-ALHVA 128 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~----------~~g~I~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVa 128 (337)
.|. +++ ++..+|+.. .++.|..||..+.+.+..+ +... .......|.++++++|| +|||+
T Consensus 80 ~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~----r~~~g~~P~~~a~spDGk~lyVa 154 (386)
T 3sjl_D 80 LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----RFLVGTYPWMTSLTPDGKTLLFY 154 (386)
T ss_dssp SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC----CCCBSCCGGGEEECTTSSEEEEE
T ss_pred CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc----ccccCCCCceEEEcCCCCEEEEE
Confidence 685 888 456799443 3567999998554433322 2100 01123579999999999 79999
Q ss_pred ECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCc----eeeCCCCCcc----cc-cceeeeccc-cCCCCCCCCcc
Q psy4771 129 DAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNS----VTVDSDGQTG----QT-EQLISMDTE-IDGAKPQIPNS 196 (337)
Q Consensus 129 d~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~----v~~~~~g~~~----~~-~~v~~~~~~-~~~~~~~~pn~ 196 (337)
+.. +.|..||.+++++..-+.. .|.....|.+ +++.+||+++ .. +.+...... ++...-...+.
T Consensus 155 n~~~~~~VsVID~~t~~vv~tI~v----~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~ 230 (386)
T 3sjl_D 155 QFSPAPAVGVVDLEGKAFKRMLDV----PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 230 (386)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEEC----CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred EcCCCCeEEEEECCCCcEEEEEEC----CCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccc
Confidence 753 4599999999887654431 1111113444 4788999987 22 444321111 11111111233
Q ss_pred EEEc-CCCcE-EEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec----------cccceee---EEEccCCCEE
Q psy4771 197 VTVD-SDGMV-YWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA----------NLHFANG---VELSADESFV 261 (337)
Q Consensus 197 v~vd-~~G~l-yvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~----------~~~~p~g---ia~~~dg~~l 261 (337)
.+++ ++|++ |+++. |+|+.+|..++..++... ....|.| ++++++++++
T Consensus 231 ~~~~~~dG~~~~vs~~----------------g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l 294 (386)
T 3sjl_D 231 PAYSQKAGRLVWPTYT----------------GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 294 (386)
T ss_dssp CEEETTTTEEEEEBTT----------------SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred ceeEcCCCcEEEEeCC----------------CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence 4554 68874 44442 488888877654432211 1112434 8899999999
Q ss_pred EEEeC---------CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC--EEEEecCC
Q psy4771 262 IVAET---------MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN--FLVSLVCP 313 (337)
Q Consensus 262 yva~~---------~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~--l~va~~~~ 313 (337)
||+.. ..++|+++|....+... ++- ++..|.+|++++||+ ||++....
T Consensus 295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~-~i~---vg~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLA-KFE---MGHEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEE-EEE---EEEEECEEEECSSSSCEEEEEETTT
T ss_pred EEEeccccccccCCCCCEEEEEECCCCeEEE-EEE---CCCCcceEEECCCCCeEEEEEcCCC
Confidence 99863 24789999986443211 111 123488999999996 67776543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=106.74 Aligned_cols=192 Identities=11% Similarity=0.119 Sum_probs=120.0
Q ss_pred CCeEE-EEecCcEEEEEeCCceeEEE--ecCccccCccccCccCCcceEEEC--CCC-cEEEEE----------------
Q psy4771 72 KGDLY-MGVDGGHILKLSGGKLVPVV--KLGKDCYGFKYEQQCGRPLGIKFD--KNG-ALHVAD---------------- 129 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~P~Gl~~d--~~G-~lyVad---------------- 129 (337)
+..+| ++..++||.|++....+... .+ +....|.|+++. +++ .+|++.
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~i----------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEI----------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEEC----------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeC----------CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 45789 78889999999985543322 22 344679999984 676 788884
Q ss_pred -CCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EE
Q psy4771 130 -AYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VY 206 (337)
Q Consensus 130 -~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-ly 206 (337)
.+.+ +..||.++.++..-+. ..| .|.+++++++|+ +|
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~----Vgg------------------------------------~pd~~~~spdGk~~~ 210 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVL----VSG------------------------------------NLDNCDADYEGKWAF 210 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEE----ESS------------------------------------CCCCEEECSSSSEEE
T ss_pred cccCceEEEEECCCCeEEEEEE----eCC------------------------------------CccceEECCCCCEEE
Confidence 2223 7778888776655442 222 245555555554 45
Q ss_pred EEcCCCCc-----------cCceee--------eeec----CCccEEEEcCCC--Cee-EEEeccccceeeEEEccCCCE
Q psy4771 207 WSDSSTKY-----------KSGLFE--------GLTS----GSGRLIQYNPKT--KKN-KVLIANLHFANGVELSADESF 260 (337)
Q Consensus 207 vtd~~~~~-----------~~~~~~--------~~~~----~~G~v~~~d~~~--~~~-~~~~~~~~~p~gia~~~dg~~ 260 (337)
+|+..+.. .+++.. .... .-+.|.++|.++ ++. .....-...|.|+.++|||++
T Consensus 211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~ 290 (595)
T 1fwx_A 211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKH 290 (595)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSE
T ss_pred EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCE
Confidence 44433210 000000 0000 014688999887 433 233334468999999999999
Q ss_pred EEEEeCCCCEEEEEEeeCC------CCCc-eeeeecCC-CCCCCceeECCCCCEEEEecCC
Q psy4771 261 VIVAETMSSRVHRYYLKGP------KQGK-SEVFIDGL-PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 261 lyva~~~~~~I~~~~~~g~------~~~~-~~~~~~~~-~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+||++...++|.+|+.+.. ++.. ..+..+-. ...|..+++|++|++|++....
T Consensus 291 v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld 351 (595)
T 1fwx_A 291 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD 351 (595)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT
T ss_pred EEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC
Confidence 9999999999999998631 1111 12222211 2249999999999999999766
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-09 Score=98.60 Aligned_cols=195 Identities=15% Similarity=0.172 Sum_probs=116.6
Q ss_pred cCccEEEe-eCCeEE-EEecC------cEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEEC----
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDG------GHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA---- 130 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~------g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~---- 130 (337)
..|+.+.+ .+| +| +...+ |.|+.+|..+.+.+.++... ......+.++.+.++++.+++..
T Consensus 138 s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~------~~~~~~~Yd~~~~p~~~~mvsS~wg~p 210 (462)
T 2ece_A 138 SRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID------RGDQYLAYDFWWNLPNEVLVSSEWAVP 210 (462)
T ss_dssp EEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB------CTTCCCCCCEEEETTTTEEEECBCCCH
T ss_pred CcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC------CCCccccceEEECCCCCEEEEccCcCc
Confidence 36888888 677 77 55555 68999997655444443211 01223456688899986555532
Q ss_pred ----------------CCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCC
Q psy4771 131 ----------------YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIP 194 (337)
Q Consensus 131 ----------------~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~p 194 (337)
.+.|..+|.+++++..-... |. ....|
T Consensus 211 ~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v-----g~--------------------------------~g~~P 253 (462)
T 2ece_A 211 NTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL-----GE--------------------------------ENRMA 253 (462)
T ss_dssp HHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES-----CT--------------------------------TEEEE
T ss_pred cccccccchhhhhhccCCEEEEEECCCCcEeeEEec-----CC--------------------------------CCCcc
Confidence 24588899887765443321 10 11246
Q ss_pred ccEEE--cCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-----c-----c-----------cccee
Q psy4771 195 NSVTV--DSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-----A-----N-----------LHFAN 250 (337)
Q Consensus 195 n~v~v--d~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-----~-----~-----------~~~p~ 250 (337)
..|.+ +++|+ +|++..-+ ..+.++.|+++..+.++..... . . ...|.
T Consensus 254 ~~i~f~~~Pdg~~aYV~~e~~---------~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 254 LELRPLHDPTKLMGFINMVVS---------LKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp EEEEECSSTTCCEEEEEEEEE---------TTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ceeEeeECCCCCEEEEEEeee---------ccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 77766 88886 88776400 0001223322221122211100 0 0 24689
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc-e-eeeec------------CCCCCCCceeECCCCC-EEEEe
Q psy4771 251 GVELSADESFVIVAETMSSRVHRYYLKGPKQGK-S-EVFID------------GLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 251 gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~-~-~~~~~------------~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
+|++++||++|||++.+.+.|.+|++++..... . .+... .+.+.|.++++++||+ +||+.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999999999999999999986432111 1 12221 1234599999999996 99998
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-09 Score=91.69 Aligned_cols=175 Identities=17% Similarity=0.096 Sum_probs=111.7
Q ss_pred cEEEeeCCeEE-EEecC--cEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 66 EAVVKHKGDLY-MGVDG--GHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 66 ~~i~~~~g~ly-~d~~~--g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
+++.+.++.|| +.-.. .+|.++|..+.+...... .+......|++++. ++||++++..+ ++.+|+++
T Consensus 46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~--------l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIE--------LGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEE--------CCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTT
T ss_pred ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEe--------cCCccceeEEEEeC-CEEEEEEeeCCEEEEEECcc
Confidence 67777788999 44333 389999874333232221 01112346788864 49999987655 99999988
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
.++..-+. ..+ ...+++.| .+.+|++|.+
T Consensus 117 ~~~~~ti~----~~~------------------------------------eG~glt~d-g~~L~~SdGs---------- 145 (262)
T 3nol_A 117 LRQVRSFN----YDG------------------------------------EGWGLTHN-DQYLIMSDGT---------- 145 (262)
T ss_dssp CCEEEEEE----CSS------------------------------------CCCCEEEC-SSCEEECCSS----------
T ss_pred CcEEEEEE----CCC------------------------------------CceEEecC-CCEEEEECCC----------
Confidence 76554432 111 23455543 2469998842
Q ss_pred eecCCccEEEEcCCCCeeEEEe------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec--CC--
Q psy4771 222 LTSGSGRLIQYNPKTKKNKVLI------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID--GL-- 291 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~~~~~------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~--~~-- 291 (337)
++|+.+|+++.++..-. ..+..+|.+.+. +| .||++....+.|.++|+..++ ..-.++ ++
T Consensus 146 -----~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~---V~~~Id~~~L~~ 215 (262)
T 3nol_A 146 -----PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGK---VTGIIDLNGILA 215 (262)
T ss_dssp -----SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCB---EEEEEECTTGGG
T ss_pred -----CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCc---EEEEEECCcCcc
Confidence 38999999987653221 124567888876 66 699999999999999986432 211111 01
Q ss_pred --------CCCCCceeECCCCC-EEEEe
Q psy4771 292 --------PGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 292 --------~g~Pdgi~~d~dG~-l~va~ 310 (337)
...|.|||.|++++ +||+.
T Consensus 216 ~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 216 EAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp GSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 12578999999865 99987
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=99.56 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=106.9
Q ss_pred cCCcceEEECC-CCcEEEEECCCc-EEEEEcCCCeEEEEeccccccC--CCCCCCCCceeeCCCCCcccccceeeecccc
Q psy4771 111 CGRPLGIKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEID--GAKPQIPNSVTVDSDGQTGQTEQLISMDTEI 186 (337)
Q Consensus 111 ~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~--g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~ 186 (337)
...|.|.++|+ +|++|+++.+.+ |.++|++++.+..+.-+ ... |.
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~--~~s~~g~----------------------------- 60 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID--GASSNGD----------------------------- 60 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT--TTCCSSC-----------------------------
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC--CccccCC-----------------------------
Confidence 46799999987 579999998765 99999986655544211 111 21
Q ss_pred CCCCCCCCccEEE---cCCCcEEE-EcCCCCccCceeeeeecCCccEEEEcCC---CCeeEEEec--------------c
Q psy4771 187 DGAKPQIPNSVTV---DSDGMVYW-SDSSTKYKSGLFEGLTSGSGRLIQYNPK---TKKNKVLIA--------------N 245 (337)
Q Consensus 187 ~~~~~~~pn~v~v---d~~G~lyv-td~~~~~~~~~~~~~~~~~G~v~~~d~~---~~~~~~~~~--------------~ 245 (337)
+...+.+|.+ |++|+||+ ++.+..+.-. .........|++||+. +++.....+ .
T Consensus 61 ---~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~--g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~ 135 (334)
T 2p9w_A 61 ---GEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA--DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR 135 (334)
T ss_dssp ---CSEEEEEEEESSSSSCCEEEEEEEETTTTCTT--SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC
T ss_pred ---CcceeeEEEEeccCCCCcEEEEEccccccccc--ccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc
Confidence 2345789999 78999998 5533221000 0001234579999988 666543332 1
Q ss_pred ccceeeEEEccCCCEEEEEeCCC-CEEEEEEeeCCCCCceeeee-c-----CCCCCCCceeECCCCCEEEEecCC
Q psy4771 246 LHFANGVELSADESFVIVAETMS-SRVHRYYLKGPKQGKSEVFI-D-----GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~-~~I~~~~~~g~~~~~~~~~~-~-----~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
...+|+|+++++|+ +||+++.. +.|+|++.+|.. ...|. + ...| +.||+++++|+++++....
T Consensus 136 ~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~---~~~~~~~~~~~~~~~G-~nGIv~~pdg~~Liv~~~~ 205 (334)
T 2p9w_A 136 PFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKT---VSTFAWESGNGGQRPG-YSGITFDPHSNKLIAFGGP 205 (334)
T ss_dssp CEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCC---EEEEEECCCCSSSCCS-CSEEEEETTTTEEEEESSS
T ss_pred ccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCE---EeeeeecCCCcccccC-cceEEEeCCCCEEEEEcCC
Confidence 23599999999995 99999999 999999998752 23332 1 1223 7899999999855554333
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-08 Score=88.77 Aligned_cols=184 Identities=16% Similarity=0.104 Sum_probs=115.4
Q ss_pred ccEEEeeCCeEEEEecC---cEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 65 PEAVVKHKGDLYMGVDG---GHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 65 P~~i~~~~g~ly~d~~~---g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
-+++.++++.||.+... .+|.++|..+.+...... .+......|++++. ++||++++..+ ++.+|++
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~--------l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAE--------VPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEE--------CCTTCCEEEEEEET-TEEEEEESSSSEEEEEETT
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEe--------CCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECC
Confidence 34677778899954443 489999974333222221 01122346778764 59999987655 9999998
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceee
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~ 220 (337)
+.++..-+. .. ..+-+++-| .++||++|.+
T Consensus 94 tl~~~~ti~----~~------------------------------------~~Gwglt~d-g~~L~vSdgs--------- 123 (243)
T 3mbr_X 94 TLTPRARFR----YP------------------------------------GEGWALTSD-DSHLYMSDGT--------- 123 (243)
T ss_dssp TTEEEEEEE----CS------------------------------------SCCCEEEEC-SSCEEEECSS---------
T ss_pred cCcEEEEEe----CC------------------------------------CCceEEeeC-CCEEEEECCC---------
Confidence 876554432 11 123455543 2469999842
Q ss_pred eeecCCccEEEEcCCCCeeEEEe----c--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec--C--
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLI----A--NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID--G-- 290 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~----~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~--~-- 290 (337)
+.|+.+|+++.+...-. . .+.+.|.+.+. +| .||++...++.|.++|+..++ ..-.++ +
T Consensus 124 ------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~---V~~~idl~~l~ 192 (243)
T 3mbr_X 124 ------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGK---VVAWIDLQALV 192 (243)
T ss_dssp ------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCB---EEEEEECGGGS
T ss_pred ------CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCC---EEEEEECCcCc
Confidence 38999999987653322 1 23466888765 56 699999999999999986432 111111 0
Q ss_pred ---------CCCCCCceeECCCC-CEEEEecCCCCCchhhc
Q psy4771 291 ---------LPGLPDNVKRDSKG-NFLVSLVCPVEQPSEQA 321 (337)
Q Consensus 291 ---------~~g~Pdgi~~d~dG-~l~va~~~~~~~p~~~~ 321 (337)
....|.|||.|+++ ++||+- +--|.|.+
T Consensus 193 ~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG---K~wp~~~~ 230 (243)
T 3mbr_X 193 PDADALTDSTNDVLNGIAFDAEHDRLFVTG---KRWPMLYE 230 (243)
T ss_dssp TTTTSCCCTTSSCEEEEEEETTTTEEEEEE---TTCSEEEE
T ss_pred cccccccCCcCCceEEEEEcCCCCEEEEEC---CCCCcEEE
Confidence 11257899999976 599987 22355544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.1e-09 Score=97.27 Aligned_cols=187 Identities=17% Similarity=0.174 Sum_probs=127.0
Q ss_pred cEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC-cEEEEEcCC
Q psy4771 66 EAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF-GLYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~-gv~~vd~~~ 141 (337)
.++++ .++.+| ++..++.|..|+......+..+. .....+.+++++++| .+|++.... .|..+|.++
T Consensus 173 ~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 173 ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD---------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE---------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc---------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 34566 566666 77788999999864332222221 223568899999998 567787544 488899887
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~ 220 (337)
++...... ....+.+++++++|+ +|++......
T Consensus 244 ~~~~~~~~----------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~------ 277 (433)
T 3bws_A 244 KLEIRKTD----------------------------------------KIGLPRGLLLSKDGKELYIAQFSASN------ 277 (433)
T ss_dssp TEEEEECC----------------------------------------CCSEEEEEEECTTSSEEEEEEEESCT------
T ss_pred CcEEEEec----------------------------------------CCCCceEEEEcCCCCEEEEEECCCCc------
Confidence 76544332 122378999999986 6666543210
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
....+|.|+.+|..+++..........+.+++++++++.+|++....++|..+++++.+. ... .. ....|.++++
T Consensus 278 -~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~--~~~-~~-~~~~~~~~~~ 352 (433)
T 3bws_A 278 -QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV--QKS-IP-VFDKPNTIAL 352 (433)
T ss_dssp -TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--EEE-EE-CSSSEEEEEE
T ss_pred -cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--EEE-ec-CCCCCCeEEE
Confidence 012467899999988876555544457889999999999999999999999999864321 122 22 2344789999
Q ss_pred CCCCC-EEEEecC
Q psy4771 301 DSKGN-FLVSLVC 312 (337)
Q Consensus 301 d~dG~-l~va~~~ 312 (337)
+++|+ +|++...
T Consensus 353 s~dg~~l~~~~~~ 365 (433)
T 3bws_A 353 SPDGKYLYVSCRG 365 (433)
T ss_dssp CTTSSEEEEEECC
T ss_pred cCCCCEEEEEecC
Confidence 99997 7777653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-08 Score=87.78 Aligned_cols=204 Identities=12% Similarity=0.154 Sum_probs=129.2
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+.++.+|+...++.|++++... ....... ........++++++|+||++....+|+.+|++ |+......
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~g-~~~~~~~---------~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTDG-TEKWRFK---------TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp EETTEEEEECTTSEEEEECTTS-CEEEEEE---------CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred EECCEEEEEecCCEEEEEcCCC-CEEEEEc---------CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe
Confidence 3588999888888999998742 1121111 01122346788889999999765789999998 55443332
Q ss_pred cccccCCCCCCCCCceeeCCCCCcc--cccceeeeccccCC-----CCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEIDG-----AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~~~-----~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
. .+. ....++++++|+++ + +++..++..... ........++++++|+||++...
T Consensus 174 ~----~~~---~~~~~~~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~----------- 234 (330)
T 3hxj_A 174 T----NDA---ITSAASIGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLD----------- 234 (330)
T ss_dssp C----SSC---CCSCCEECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETT-----------
T ss_pred c----CCC---ceeeeEEcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCC-----------
Confidence 1 111 24557788888887 5 777776621100 11245778999999999988753
Q ss_pred ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
|.|+++|+++...............+++++++ .||++.. .+.|++++.++.. ... ..........+.+|.
T Consensus 235 ----~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~-~ggl~~~d~~g~~---~~~-~~~~~~~~~~~~~d~ 304 (330)
T 3hxj_A 235 ----GHLYAINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSY-DGHLYAINPDGTE---KWN-FETGSWIIATPVIDE 304 (330)
T ss_dssp ----TEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECT-TCEEEEECTTSCE---EEE-EECSSCCCSCCEECT
T ss_pred ----CeEEEECCCCCEeEEeeCCCCccccceEcCCC-eEEEecC-CCCEEEECCCCcE---EEE-EEcCCccccceEEcC
Confidence 37788876544443333333345567777677 5998774 4589999854321 111 111122356788999
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
+|++|++...+
T Consensus 305 ~g~l~~gt~~G 315 (330)
T 3hxj_A 305 NGTIYFGTRNG 315 (330)
T ss_dssp TCCEEEECTTS
T ss_pred CCEEEEEcCCC
Confidence 99999999777
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-08 Score=95.59 Aligned_cols=204 Identities=10% Similarity=0.042 Sum_probs=126.9
Q ss_pred eCCeEE-EEecCcEEEEEeCC----ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-------cEEEEE
Q psy4771 71 HKGDLY-MGVDGGHILKLSGG----KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-------GLYKVN 138 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-------gv~~vd 138 (337)
++..|| .+..+++|+.+|.. +.+.+..+ +.++-. ......+|+++.+.++| |||+..+. ++..+|
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i-e~~~~~-~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI-EPEEVK-KVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE-CHHHHH-HHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeee-chhhcc-cccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 366788 78889999999852 22222222 100000 00012379999999999 99985432 499999
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCC--cc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTK--YK 215 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~--~~ 215 (337)
.+++++..-.. ..+. +...+.++.+.++++ +|.++++.- +.
T Consensus 171 ~~T~~v~~~~~----~~~~--------------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 171 HYSFEPLGKWE----IDRG--------------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp TTTCCEEEECC----SBCT--------------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred CCCCeEEEEEc----cCCC--------------------------------CccccceEEECCCCCEEEEccCcCccccc
Confidence 99887665442 1111 234466888999987 666665421 10
Q ss_pred C-cee-eeeecCCccEEEEcCCCCeeEEEecc---ccceeeEEE--ccCCCEEEEEeC-----CCCEEEEEEeeCCCCCc
Q psy4771 216 S-GLF-EGLTSGSGRLIQYNPKTKKNKVLIAN---LHFANGVEL--SADESFVIVAET-----MSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 216 ~-~~~-~~~~~~~G~v~~~d~~~~~~~~~~~~---~~~p~gia~--~~dg~~lyva~~-----~~~~I~~~~~~g~~~~~ 283 (337)
. ... ........+|..||.++++.....+- ...|..|++ +||++++||+.. .++.|++|+.+++....
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~ 294 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA 294 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE
Confidence 0 000 00012345899999987764332222 246888877 999999999998 88999988887532111
Q ss_pred eeee-------ecCC----------CCCCCceeECCCCC-EEEEecCC
Q psy4771 284 SEVF-------IDGL----------PGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 284 ~~~~-------~~~~----------~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
..++ ...+ ++.|.+|.+++||+ |||+....
T Consensus 295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 1111 0011 35689999999997 99999866
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-08 Score=99.48 Aligned_cols=176 Identities=12% Similarity=0.007 Sum_probs=120.1
Q ss_pred eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEc--CCCeEEE
Q psy4771 71 HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNV--TTGQTEQ 146 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~--~~g~~~~ 146 (337)
.++.+| +...++.|..||....+.+..+ .....|.+++++++| .||+++....|..+|. .+++...
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i----------~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVI----------DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEE----------ECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEE----------ecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE
Confidence 356777 7778889999987433333222 111238899999999 7899886655999998 6665433
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC----CCc-EEEEcCCCCccCceeee
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS----DGM-VYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~----~G~-lyvtd~~~~~~~~~~~~ 221 (337)
-.. ....|.++++++ ||+ +|+++..
T Consensus 217 ~i~----------------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~---------- 246 (543)
T 1nir_A 217 EIK----------------------------------------IGIEARSVESSKFKGYEDRYTIAGAYW---------- 246 (543)
T ss_dssp EEE----------------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEE----------
T ss_pred EEe----------------------------------------cCCCcceEEeCCCcCCCCCEEEEEEcc----------
Confidence 221 123488999999 986 8877642
Q ss_pred eecCCccEEEEcCCCCeeEEEecc------------ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec
Q psy4771 222 LTSGSGRLIQYNPKTKKNKVLIAN------------LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~~~~~~~------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~ 289 (337)
.+.|..+|..+++....... -..+.+|+++++++.+|++....++|+.++.+..+......+ .
T Consensus 247 ----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~ 321 (543)
T 1nir_A 247 ----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G 321 (543)
T ss_dssp ----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred ----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence 23677778777765433321 125678999999999999999999999999865322221122 2
Q ss_pred CCCCCCCceeECCCCC-EEEEecC
Q psy4771 290 GLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 290 ~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
....|.+++++++|+ +|++...
T Consensus 322 -~~~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 322 -AAPFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp -CCSSCCCEEECTTSCEEEEEEGG
T ss_pred -cCcCccCceECCCCCEEEEEecC
Confidence 234689999999998 6777653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-09 Score=99.95 Aligned_cols=202 Identities=12% Similarity=0.069 Sum_probs=115.5
Q ss_pred CccEEEe--eCCeEEEEe----------cCcEEEEEeCCceeEEEe--cCccccCccccCccCCcceEEECCCC-cEEEE
Q psy4771 64 GPEAVVK--HKGDLYMGV----------DGGHILKLSGGKLVPVVK--LGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVA 128 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~----------~~g~I~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVa 128 (337)
.| ++++ ++..+|+.. .++.|..+|..+.+.+.. ++... .......|.++++++|| +|||+
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~----r~~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP----RFLVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC----CCCBSCCGGGSEECTTSSEEEEE
T ss_pred CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc----ccccCCCcceEEEcCCCCEEEEE
Confidence 68 9998 456799443 467799999854433322 22100 00123579999999999 89999
Q ss_pred ECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCc----eeeCCCCCcc----ccc---------------------
Q psy4771 129 DAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNS----VTVDSDGQTG----QTE--------------------- 177 (337)
Q Consensus 129 d~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~----v~~~~~g~~~----~~~--------------------- 177 (337)
+.. +.|..||.+++++..-+.. .+.....|.+ +++.++|+++ ..+
T Consensus 195 n~~~~~~VsVID~~t~kvv~~I~v----~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~ 270 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGKTFDRMLDV----PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHP 270 (426)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEEC----CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCC
T ss_pred ecCCCCeEEEEECCCCeEEEEEEc----CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEe
Confidence 753 4599999998876543321 0000001111 4444555443 111
Q ss_pred ----------------ceeeeccccCC----CC-----------CCCCcc---EEEcCCC-cEEEEcCCCCccCceeeee
Q psy4771 178 ----------------QLISMDTEIDG----AK-----------PQIPNS---VTVDSDG-MVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 178 ----------------~v~~~~~~~~~----~~-----------~~~pn~---v~vd~~G-~lyvtd~~~~~~~~~~~~~ 222 (337)
.+..++..-.. .. ...|.+ ++++++| ++|+++..... + .-
T Consensus 271 ~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~--g---th 345 (426)
T 3c75_H 271 AFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE--W---KH 345 (426)
T ss_dssp EECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT--T---CT
T ss_pred eecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc--c---cc
Confidence 12222210000 00 001222 5666654 36665431100 0 00
Q ss_pred ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCC-EEEEEeCCCCEEEEEEeeCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES-FVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~-~lyva~~~~~~I~~~~~~g~ 279 (337)
....+.|.++|.+++++..-..-...|++|++++||+ .+|+++...+.|.+||....
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred cCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 0123579999999887654444445799999999999 99999999999999998643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-08 Score=93.44 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=123.3
Q ss_pred CccEEEe-e-CCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEEC--------C
Q psy4771 64 GPEAVVK-H-KGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA--------Y 131 (337)
Q Consensus 64 ~P~~i~~-~-~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~--------~ 131 (337)
.|.++++ . +..+| ++..++.|..|+......+..+ .....|.+++++++| .|+++.. .
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT----------DKIGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC----------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe----------cCCCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 5777887 3 45677 6667899999987433333322 122458999999999 6677653 1
Q ss_pred CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcC
Q psy4771 132 FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS 210 (337)
Q Consensus 132 ~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~ 210 (337)
..|..+|..+++....... ...+.+++++++|+ +|++..
T Consensus 283 g~i~~~d~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTIGP----------------------------------------PGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp EEEEEEETTTTEEEEEEEE----------------------------------------EECEEEEEECSSTTEEEEEET
T ss_pred CeEEEEECCCCcEEeeccC----------------------------------------CCCcceEEECCCCCEEEEEec
Confidence 2488889887765544321 12467899999985 888765
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC--------------CEEEEEEe
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS--------------SRVHRYYL 276 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~--------------~~I~~~~~ 276 (337)
. +|.|..+|.++++..........+.++++++||+.||++.... ++|+.+++
T Consensus 323 ~--------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 323 C--------------CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp T--------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred C--------------CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 4 3588899988887665555667789999999999999998764 38999987
Q ss_pred eCCCCCceeeeecCCCCCCCceeECCCCC-EEEEe
Q psy4771 277 KGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 277 ~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
... ........ ...|.+++++++|+ ++++.
T Consensus 389 ~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 389 TTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp TTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEE
T ss_pred CCC---cEEEEecC-CCCCceEEEcCCCCEEEEEE
Confidence 532 22111221 24588999999997 45554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-08 Score=95.93 Aligned_cols=223 Identities=10% Similarity=0.010 Sum_probs=137.4
Q ss_pred CccEEEe--eCCeEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEEC----CCC-cEEEEECC-Cc
Q psy4771 64 GPEAVVK--HKGDLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFD----KNG-ALHVADAY-FG 133 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d----~~G-~lyVad~~-~g 133 (337)
.|+++++ ++..+|+...++.|..||.. +.+.+..+ .....|.+++++ ++| .+||++.. ..
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i----------~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE----------ECCSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE----------ecCCCCceeEEccccCCCCCEEEEEEccCCe
Confidence 6889988 45578977788999999973 44433322 334569999999 588 78998755 34
Q ss_pred EEEEEcCCCeEEEEecccc-ccCCCC---CCCCCceeeCCCCCcc-----cccceeeeccccCC-------CCCCCCccE
Q psy4771 134 LYKVNVTTGQTEQLISMDT-EIDGAK---PQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG-------AKPQIPNSV 197 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~-~~~g~~---~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~-------~~~~~pn~v 197 (337)
+..+|..+.+....+.... ..++.. ...+..++.++++... .++.|..++..-.. ....+++++
T Consensus 268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~ 347 (567)
T 1qks_A 268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 347 (567)
T ss_dssp EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence 8889988776655443111 111100 0012345566655443 23444444311000 023468899
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccce---eeEEE-ccCCCEEEEEe-CCCCE
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFA---NGVEL-SADESFVIVAE-TMSSR 270 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p---~gia~-~~dg~~lyva~-~~~~~ 270 (337)
.++++|+ +|+++... +.|..+|.+++++.....- ...| .|+.+ +|+++.+|++. .+.+.
T Consensus 348 ~~~pdgr~~~va~~~s--------------n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~ 413 (567)
T 1qks_A 348 GLDGSHRYFITAANAR--------------NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 413 (567)
T ss_dssp EECTTSCEEEEEEGGG--------------TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred eECCCCCEEEEEeCCC--------------CeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCe
Confidence 9999997 77777543 3889999999876554433 3444 36664 68877898865 46689
Q ss_pred EEEEEeeCCCC----Cc-eeeeecCCCCCCCceeECCCCC-EEEEec
Q psy4771 271 VHRYYLKGPKQ----GK-SEVFIDGLPGLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 271 I~~~~~~g~~~----~~-~~~~~~~~~g~Pdgi~~d~dG~-l~va~~ 311 (337)
|.+++.+..+. .+ ...+ ....+.+-.|+.+++|+ +||+..
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i-~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSF-PALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEE-ECSCSCCCCEECCTTCSEEEEECT
T ss_pred EEEecCCCCCCccccCEEEEEE-ecCCCCCEEEEeCCCCCeEEEecC
Confidence 99999874221 11 1222 21222245688999995 999884
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-08 Score=90.52 Aligned_cols=210 Identities=13% Similarity=0.094 Sum_probs=112.9
Q ss_pred cCccEEEe--eCCeEEEEe----------cCcEEEEEeCCceeEEEe--cCccccCccccCccCCcceEEECCCC-cEEE
Q psy4771 63 HGPEAVVK--HKGDLYMGV----------DGGHILKLSGGKLVPVVK--LGKDCYGFKYEQQCGRPLGIKFDKNG-ALHV 127 (337)
Q Consensus 63 ~~P~~i~~--~~g~ly~d~----------~~g~I~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyV 127 (337)
..| ++++ ++..+|+.. .++.|..+|..+.+.+.. ++.. . .......|.+++++++| .|||
T Consensus 67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~--~--~~~~g~~p~~~~~spDG~~l~v 141 (373)
T 2mad_H 67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA--P--RFDVGPYSWMNANTPNNADLLF 141 (373)
T ss_pred CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc--c--ccccCCCccceEECCCCCEEEE
Confidence 368 8888 456799543 356788998754433322 2200 0 00112468999999999 8999
Q ss_pred EECC--CcEEEEEcCCCeEEEE-eccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCCCC---------
Q psy4771 128 ADAY--FGLYKVNVTTGQTEQL-ISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDGAK--------- 190 (337)
Q Consensus 128 ad~~--~gv~~vd~~~g~~~~l-~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~~~--------- 190 (337)
+... +.|..|| +++++... .. . |..+.+.++|+.. .++.+..++. .+..
T Consensus 142 ~n~~~~~~v~viD-~t~~~~~~~i~----~-------~~~~~~~~~~~~~~~~~~~dg~~~~vd~--~g~~~~~~~~~~~ 207 (373)
T 2mad_H 142 FQFAAGPAVGLVV-QGGSSDDQLLS----S-------PTCYHIHPGAPSTFYLLCAQGGLAKTDH--AGGAAGAGLVGAM 207 (373)
T ss_pred EecCCCCeEEEEE-CCCCEEeEEcC----C-------CceEEEEeCCCceEEEEcCCCCEEEEEC--CCcEEEEEecccc
Confidence 9743 4599999 98876544 32 1 2222222222211 1122222221 1100
Q ss_pred --CCCC--ccEEEcCC-CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe----------ccccceee---E
Q psy4771 191 --PQIP--NSVTVDSD-GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI----------ANLHFANG---V 252 (337)
Q Consensus 191 --~~~p--n~v~vd~~-G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~----------~~~~~p~g---i 252 (337)
...| ....+.++ +.+|+... .|.++.+|..++....+. .....|.| +
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~~---------------~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWPVY---------------SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred ccCCcceeecceeEecCCEEEEEcC---------------CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 0001 11222332 23343331 246777776544322111 01123555 8
Q ss_pred EEccCCCEEEEEeC---------CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC--EEEEe
Q psy4771 253 ELSADESFVIVAET---------MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN--FLVSL 310 (337)
Q Consensus 253 a~~~dg~~lyva~~---------~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~--l~va~ 310 (337)
++++|++++||+.. ..+.|++++.+..+. ... +. .++.|.++++++||+ +|++.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~-i~-~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQ-IS-LGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEE-EE-CCCCcCeEEECCCCCeEEEEEc
Confidence 99999999999864 246899999764321 112 22 445699999999998 55544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-09 Score=98.37 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=61.3
Q ss_pred EEEcCCCc-EEEEcC-C-CCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC-CCCEEE
Q psy4771 197 VTVDSDGM-VYWSDS-S-TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET-MSSRVH 272 (337)
Q Consensus 197 v~vd~~G~-lyvtd~-~-~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~-~~~~I~ 272 (337)
+++++||+ +||+.. . ... +.. .+.+..+|.++++...-......|+||++++||+++|++.. ..+.|.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~-------~~~-~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSC-------LAA-AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCT-------TSC-EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred eEEcCCCCEEEEEeccccCcc-------ccc-CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEE
Confidence 67777764 777643 1 100 000 12456899888765443333347999999999998999988 699999
Q ss_pred EEEeeCCCCCceeeeecCCCCCCCceeECCC
Q psy4771 273 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 273 ~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
++|+...+ ..--+. ....|++|+++.+
T Consensus 341 VID~~t~k---vv~~I~-vg~~P~~i~~~~~ 367 (368)
T 1mda_H 341 IYDAASDQ---DQSSVE-LDKGPESLSVQNE 367 (368)
T ss_dssp EEESSSCE---EEEECC-CCSCCCEEECCCC
T ss_pred EEECCCCc---EEEEEE-CCCCCCEEEeecC
Confidence 99976432 111122 3356999998764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-08 Score=93.08 Aligned_cols=221 Identities=13% Similarity=0.043 Sum_probs=124.6
Q ss_pred CCeEE-EEe-----cCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC----------CcE
Q psy4771 72 KGDLY-MGV-----DGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY----------FGL 134 (337)
Q Consensus 72 ~g~ly-~d~-----~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~----------~gv 134 (337)
...+| ++. .+++|++||..+.+.+..+ +....| +++++++| .|||++.. ..|
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i----------~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV----------PTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE----------ECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEe----------cCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 34677 442 3568999986333222222 222458 99999999 89999731 238
Q ss_pred EEEEcCCCeEEEEeccc-ccc-CCCCCCCCCceeeCCCCCcc-----c-ccceeeeccc--------cCCCC----CCCC
Q psy4771 135 YKVNVTTGQTEQLISMD-TEI-DGAKPQIPNSVTVDSDGQTG-----Q-TEQLISMDTE--------IDGAK----PQIP 194 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~-~~~-~g~~~~~P~~v~~~~~g~~~-----~-~~~v~~~~~~--------~~~~~----~~~p 194 (337)
..+|.++++...-.... ... .|. .|+++++++||+++ . .+.|..++.. +.... ...|
T Consensus 84 ~v~d~~t~~~~~~i~~~~~~~~~g~---~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p 160 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPKRVQGLN---YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP 160 (361)
T ss_dssp EEEETTTCCEEEEEEECTTBCCBCC---CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred EEEECcCCcEEEEEEcCccccccCC---CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence 89998877654333210 011 122 59999999999987 2 3456655422 11000 0123
Q ss_pred cc----EEEcCCCc-EEEEcCC-CC----------c------------cCceeeeeecCCccEEEEcCCCCeeEEEec--
Q psy4771 195 NS----VTVDSDGM-VYWSDSS-TK----------Y------------KSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-- 244 (337)
Q Consensus 195 n~----v~vd~~G~-lyvtd~~-~~----------~------------~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-- 244 (337)
.+ +++.++|. +|+.... .. + .++-........|.|+.+|..++.......
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 33 66667776 3333211 00 0 000001112234678888876544322210
Q ss_pred --------cccceee---EEEccCCCEEEEEeC----------CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCC
Q psy4771 245 --------NLHFANG---VELSADESFVIVAET----------MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 245 --------~~~~p~g---ia~~~dg~~lyva~~----------~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
....|.| +++++|++++||+.. ..++|++++.+..+. ...+ . ... |.+|++++|
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i-~-~~~-p~~ia~spd 315 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARI-P-GRD-ALSMTIDQQ 315 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEE-E-CTT-CCEEEEETT
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEE-e-cCC-eeEEEECCC
Confidence 0113555 999999999999864 245899999754311 1111 2 335 999999999
Q ss_pred CC-EEEEec
Q psy4771 304 GN-FLVSLV 311 (337)
Q Consensus 304 G~-l~va~~ 311 (337)
|+ +|++..
T Consensus 316 g~~l~v~n~ 324 (361)
T 2oiz_A 316 RNLMLTLDG 324 (361)
T ss_dssp TTEEEEECS
T ss_pred CCEEEEeCC
Confidence 97 777775
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=91.62 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=101.4
Q ss_pred eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccC-CcceEEECCCC-cEEEEECCC-cEEEEEcCCCeEEEEecc
Q psy4771 74 DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCG-RPLGIKFDKNG-ALHVADAYF-GLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~P~Gl~~d~~G-~lyVad~~~-gv~~vd~~~g~~~~l~~~ 150 (337)
.+++...+++|..|+..+.+.+..+.. .... .|.+++++++| .+|++.... .|..+|..+++.......
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITI--------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEEC--------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEc--------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 455778889999998743322222210 1111 58999999999 688988654 499999988776543321
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCc-cCceeeeeecCCcc
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKY-KSGLFEGLTSGSGR 228 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~-~~~~~~~~~~~~G~ 228 (337)
...+. ....|.+++++++|+ +|+++..... +++ .....+.
T Consensus 75 --~~~~~--------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~----~~~~~~~ 116 (337)
T 1pby_B 75 --STPEE--------------------------------RVKSLFGAALSPDGKTLAIYESPVRLELTH----FEVQPTR 116 (337)
T ss_dssp --CBTTE--------------------------------EEECTTCEEECTTSSEEEEEEEEEEECSSC----EEECCCE
T ss_pred --CCccc--------------------------------ccccccceEECCCCCEEEEEeccccccccc----ccccCce
Confidence 00000 012478999999995 8888632100 000 0003468
Q ss_pred EEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 229 LIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 229 v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
|+.+|.++++..........|+++++++||++||++ .+.|.++++++
T Consensus 117 i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~ 163 (337)
T 1pby_B 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL---GRDLHVMDPEA 163 (337)
T ss_dssp EEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE---SSSEEEEETTT
T ss_pred EEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe---CCeEEEEECCC
Confidence 999999888765555445678999999999999999 36799998754
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-08 Score=93.05 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=111.0
Q ss_pred cCccEEEe-e--CC--eEE-EEecCc----EEEEEeCC-cee-EEEecCccccCccccCccCCcceEEECCCCcEEEEEC
Q psy4771 63 HGPEAVVK-H--KG--DLY-MGVDGG----HILKLSGG-KLV-PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA 130 (337)
Q Consensus 63 ~~P~~i~~-~--~g--~ly-~d~~~g----~I~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~ 130 (337)
+.|.+|.+ . ++ .|| ++...+ .|++++.+ +.. .+..+. .....+|+.++++++|++||++.
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~--------g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR--------HKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC--------CTTCSSEEEEEEEETTEEEEEES
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc--------cCCCCCCceEEEeCCCCEEecCC
Confidence 58999998 4 35 477 555522 47778773 322 222221 14567899999999999999975
Q ss_pred C-----------------C-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 131 Y-----------------F-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 131 ~-----------------~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
. . +|+++|+. +++.+.. .+.
T Consensus 184 ~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~----------------------------------------~l~ 221 (355)
T 3sre_A 184 HYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE----------------------------------------GFD 221 (355)
T ss_dssp CSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE----------------------------------------EES
T ss_pred cEeCCcccccchhhccCCccEEEEEECC--eEEEeec----------------------------------------CCc
Confidence 1 1 27777763 4444432 356
Q ss_pred CCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC-CCeeE--EEeccccceeeEEEcc-CCCEEEEEeC-
Q psy4771 193 IPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TKKNK--VLIANLHFANGVELSA-DESFVIVAET- 266 (337)
Q Consensus 193 ~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~~~~--~~~~~~~~p~gia~~~-dg~~lyva~~- 266 (337)
.||||++++||+ +||+|+... +|++|+.+ +++.. ....-...|.|+++++ +|+ ||++..
T Consensus 222 ~pNGia~spDg~~lYvadt~~~--------------~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~-lwva~~~ 286 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAH--------------KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD-LWVGCHP 286 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGT--------------EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC-EEEEEES
T ss_pred ccCcceECCCCCEEEEEeCCCC--------------eEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc-EEEEecC
Confidence 799999999995 999998643 67666643 23322 1223346799999999 585 999653
Q ss_pred CCC-------------EEEEEEeeCCCCCc-eeeeecCCCCC-CCceeECCCCCEEEEecC
Q psy4771 267 MSS-------------RVHRYYLKGPKQGK-SEVFIDGLPGL-PDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 267 ~~~-------------~I~~~~~~g~~~~~-~~~~~~~~~g~-Pdgi~~d~dG~l~va~~~ 312 (337)
+.. .|.|+....+.... .+++.+...-+ -...++-.+|+||++...
T Consensus 287 ~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l~~~T~a~~~~g~L~iGsv~ 347 (355)
T 3sre_A 287 NGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVF 347 (355)
T ss_dssp CHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSCCSEEEEEEETTEEEEEESS
T ss_pred CceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEEEeeEEEEEECCEEEEEEcC
Confidence 322 45555531111122 34444411001 122334456889998753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.9e-09 Score=93.99 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=99.7
Q ss_pred ceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 115 LGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
.|+++.+++++|++....+ |..+|.++++....... . ....
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~----------------------------------~~~~ 44 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM----P----------------------------------DKFG 44 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC----S----------------------------------SCCS
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec----C----------------------------------CCCC
Confidence 4778888889999976654 99999988876544321 0 1124
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-------ccceeeEEEccCCCEEEEEe
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-------LHFANGVELSADESFVIVAE 265 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyva~ 265 (337)
|.+++++++|+ +|++... .+.|+.+|.++++....... ...|++++++|||+.||++.
T Consensus 45 ~~~~~~s~dg~~~~v~~~~--------------~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNH--------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp SCEEEECTTSSEEEEEETT--------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CceeEECCCCCEEEEEeCC--------------CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence 78999999996 8888743 34899999988876443322 23489999999999999998
Q ss_pred CC-----------CCEEEEEEeeCCCCCc-eeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 266 TM-----------SSRVHRYYLKGPKQGK-SEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 266 ~~-----------~~~I~~~~~~g~~~~~-~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
.. .++|.+++++..+... ...+. .+..+.+++++++|++|++.
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 111 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSCEEEES
T ss_pred ccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCcEEEcc
Confidence 54 5799999986532222 12222 23347888899999988854
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.1e-08 Score=98.29 Aligned_cols=215 Identities=18% Similarity=0.179 Sum_probs=137.9
Q ss_pred EEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 67 AVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 67 ~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
+++. .+|.||++..++.|.+++..+.. +..+.... ........+|+.|++|+||++....|++++++++++.+
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~-----~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGKRV-AIYNKENR-----ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTEEE-EECC----------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCCCe-EEEccCCC-----CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE
Confidence 4444 46899988866669999885432 21111100 01124467899999999999975578999999888877
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcc--cccceeeeccccCC-----------CCCCCCccEEEcCCCcEEEEcCCC
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEIDG-----------AKPQIPNSVTVDSDGMVYWSDSST 212 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~~~-----------~~~~~pn~v~vd~~G~lyvtd~~~ 212 (337)
.+... .... .....+..|++|++. +.+++..++..... .....+++++.|++|+||++...
T Consensus 441 ~~~~~--~~~~---~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~- 514 (781)
T 3v9f_A 441 IIELE--KNEL---LDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG- 514 (781)
T ss_dssp ECCST--TTCC---CCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-
T ss_pred EeccC--CCCC---CeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-
Confidence 66421 0111 123457788888876 44666666522110 01245678999999999988753
Q ss_pred CccCceeeeeecCCccEEEEcCCCCeeEEEec--cc--cceeeEEEccCCCEEEEEeCCCCEE-EEEEeeCCCCCceeee
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NL--HFANGVELSADESFVIVAETMSSRV-HRYYLKGPKQGKSEVF 287 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~--~~p~gia~~~dg~~lyva~~~~~~I-~~~~~~g~~~~~~~~~ 287 (337)
+.|+++|+++++.+.... ++ ...+.|+.+++|+ ||++.. +.+ .+|+.+..+ ...+
T Consensus 515 --------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~--~Glv~~~d~~~~~---~~~~ 574 (781)
T 3v9f_A 515 --------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQ-MWLATG--EGLVCFPSARNFD---YQVF 574 (781)
T ss_dssp --------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSC-EEEEET--TEEEEESCTTTCC---CEEE
T ss_pred --------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCC-EEEEEC--CCceEEECCCCCc---EEEc
Confidence 268899988877665432 22 2346788888884 999875 456 888765432 2233
Q ss_pred e--cCCCC-CCCceeECCCCCEEEEecCC
Q psy4771 288 I--DGLPG-LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 288 ~--~~~~g-~Pdgi~~d~dG~l~va~~~~ 313 (337)
. ++++. ...+++.|++|++|++...+
T Consensus 575 ~~~~gl~~~~i~~i~~d~~g~lW~~t~~G 603 (781)
T 3v9f_A 575 QRKEGLPNTHIRAISEDKNGNIWASTNTG 603 (781)
T ss_dssp CGGGTCSCCCCCEEEECSSSCEEEECSSC
T ss_pred cccCCCCCceEEEEEECCCCCEEEEcCCc
Confidence 2 23332 34579999999999998766
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=96.72 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=137.6
Q ss_pred EEEe-eCCe-EEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCC
Q psy4771 67 AVVK-HKGD-LYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 67 ~i~~-~~g~-ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g 142 (337)
+++. .++. ||++..++.|++++.. +...+. ... . .........++.|++|+||++.. .|++++|++++
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~---~~~-~---~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN---QRN-S---QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR 481 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC---TTT-S---CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee---cCC-C---CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC
Confidence 4454 4677 9988887779999873 333321 100 0 01123567899999999999975 78999999988
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcc--cccceeeecccc-----C------CCCCCCCccEEEcCCCcEEEEc
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEI-----D------GAKPQIPNSVTVDSDGMVYWSD 209 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~-----~------~~~~~~pn~v~vd~~G~lyvtd 209 (337)
+.+.+.... ...+........+..|++|++. +.+++..++... . +.+....+++..|++|+||++.
T Consensus 482 ~~~~~~~~~-~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 482 SFTTIEKEK-DGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp EEEECCBCT-TCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred eEEEccccc-cccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 877664310 0001000122457789999886 336666655311 0 0112345678899999999877
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--ccc--ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCcee
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLH--FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSE 285 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~--~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~ 285 (337)
.. .|+++|+++++.+.... ++. ...+|+.+++| .||++. .+.|.+|+++.. ...
T Consensus 561 ~~----------------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g-~lWi~t--~~Gl~~~~~~~~---~~~ 618 (795)
T 4a2l_A 561 RE----------------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFG-RLWLST--NRGISCFNPETE---KFR 618 (795)
T ss_dssp SS----------------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTS-CEEEEE--TTEEEEEETTTT---EEE
T ss_pred CC----------------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCC-CEEEEc--CCceEEEcCCCC---cEE
Confidence 53 68889988877655432 222 34678888888 499987 468999987532 233
Q ss_pred eee--cCCCCC---CCceeECCCCCEEEEecCC
Q psy4771 286 VFI--DGLPGL---PDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 286 ~~~--~~~~g~---Pdgi~~d~dG~l~va~~~~ 313 (337)
.+. ++++.. ...+..+++|++|++...+
T Consensus 619 ~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G 651 (795)
T 4a2l_A 619 NFTESDGLQSNQFNTASYCRTSVGQMYFGGING 651 (795)
T ss_dssp EECGGGTCSCSCEEEEEEEECTTSCEEEEETTE
T ss_pred EcCCcCCCccccCccCceeECCCCeEEEecCCc
Confidence 332 233321 2467889999999999877
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-07 Score=83.80 Aligned_cols=174 Identities=11% Similarity=0.059 Sum_probs=115.6
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-Cc-EEEEEcC
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FG-LYKVNVT 140 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~g-v~~vd~~ 140 (337)
.+.++++ .+|.+|+ ..+++|+.+++ +.+.+.++.. +......+..+.++|+++|++.. .+ ++.+|++
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~--------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~ 107 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA--------PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK 107 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC--------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC--------CCCccccccEECCCCCEEEEecCCCCEEEEEeCC
Confidence 5777877 6788887 45778999998 2222322211 11123567889999999999875 44 8889987
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCCC------CCCCCccEEEcCCCcEEEEcC
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDGA------KPQIPNSVTVDSDGMVYWSDS 210 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~~------~~~~pn~v~vd~~G~lyvtd~ 210 (337)
+..+..+... ....+ ....|..++++++|+++ ..+.|..++.+ +. ....|.++.+.++|++++++.
T Consensus 108 Gk~l~~~~~~-~~~~~-~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 108 GEVLSKTEFE-TGIER-PHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp SCEEEEEEEC-CSCSS-GGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCCCEEEECTTSCEEEECB
T ss_pred CCEEEEEecc-CCCCc-ccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCccceeEcCCCCEEEEeC
Confidence 6655554321 11111 11246778899999998 33566666643 32 124688899999999998876
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEec-------cccceeeEEEccCCCEEEEEeC
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-------NLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-------~~~~p~gia~~~dg~~lyva~~ 266 (337)
.. ++|+.+|+++|+...-.. .+..|.++++.++|+ +||+++
T Consensus 184 ~~--------------~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~~ 231 (276)
T 3no2_A 184 DA--------------HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG-LYICNW 231 (276)
T ss_dssp TT--------------SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEEE
T ss_pred CC--------------CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC-EEEEec
Confidence 52 478999998776533221 255699999999995 889885
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.9e-08 Score=84.02 Aligned_cols=164 Identities=10% Similarity=0.087 Sum_probs=99.6
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEeC---CceeEEE--ecCccccCccccCccCCcceEEECCCC-cEEEEECC
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLSG---GKLVPVV--KLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY 131 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~---~~~~~~~--~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~ 131 (337)
+....+|+|++ .++.+| ++..+++++.++- +....+. .++.. ....-....||++|+++ +||++...
T Consensus 67 ~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~-----~~~~N~g~EGLA~d~~~~~L~va~E~ 141 (255)
T 3qqz_A 67 DFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ-----ESPTNCGFEGLAYSRQDHTFWFFKEK 141 (255)
T ss_dssp SSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS-----SCCCSSCCEEEEEETTTTEEEEEEES
T ss_pred CCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc-----cccccCCcceEEEeCCCCEEEEEECc
Confidence 44568999999 677777 7778889988753 2211111 11100 00112235899999987 89998643
Q ss_pred -C-cEEEEEc--CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEE
Q psy4771 132 -F-GLYKVNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVY 206 (337)
Q Consensus 132 -~-gv~~vd~--~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~ly 206 (337)
. .|+.++- .+..++.+... ...+ .....-+.++++|+ .|++|
T Consensus 142 ~p~~i~~~~g~~~~~~l~i~~~~--~~~~-------------------------------~~~~~d~S~l~~dp~tg~ll 188 (255)
T 3qqz_A 142 NPIEVYKVNGLLSSNELHISKDK--ALQR-------------------------------QFTLDDVSGAEFNQQKNTLL 188 (255)
T ss_dssp SSEEEEEEESTTCSSCCEEEECH--HHHH-------------------------------TCCSSCCCEEEEETTTTEEE
T ss_pred CCceEEEEcccccCCceeeecch--hhcc-------------------------------ccccCCceeEEEcCCCCeEE
Confidence 2 4788871 11112222110 0000 01244579999999 47799
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE--ecc-------ccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL--IAN-------LHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~--~~~-------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+....++ .|+.+|.++.....+ ..+ +..|.|||++++|+ |||+.. .|.+++|..+
T Consensus 189 iLS~~s~--------------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE-~n~~y~f~~~ 252 (255)
T 3qqz_A 189 VLSHESR--------------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE-PNRFYRFTPQ 252 (255)
T ss_dssp EEETTTT--------------EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET-TTEEEEEEC-
T ss_pred EEECCCC--------------eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC-CceEEEEEec
Confidence 8776543 777777764422221 112 46899999999995 998854 4799999854
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=97.70 Aligned_cols=210 Identities=13% Similarity=0.081 Sum_probs=130.6
Q ss_pred cCccEEEe----eCCeEEEE------------------ecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEEC
Q psy4771 63 HGPEAVVK----HKGDLYMG------------------VDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFD 120 (337)
Q Consensus 63 ~~P~~i~~----~~g~ly~d------------------~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d 120 (337)
.+|+++++ +++.+|+. ..++.+..+|..+.+....+ ...+.|.+++++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI----------~Vgg~pd~~~~s 203 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV----------LVSGNLDNCDAD 203 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE----------EESSCCCCEEEC
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE----------EeCCCccceEEC
Confidence 47999996 36778865 33456777777543333222 333579999999
Q ss_pred CCC-cEEEEECCC--------------------------------------cEEEEEcCC--CeE-EEEeccccccCCCC
Q psy4771 121 KNG-ALHVADAYF--------------------------------------GLYKVNVTT--GQT-EQLISMDTEIDGAK 158 (337)
Q Consensus 121 ~~G-~lyVad~~~--------------------------------------gv~~vd~~~--g~~-~~l~~~~~~~~g~~ 158 (337)
++| .+|++.... +|..||..+ +++ ...+. .|+
T Consensus 204 pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-----vg~- 277 (595)
T 1fwx_A 204 YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-----IAN- 277 (595)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-----EES-
T ss_pred CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-----cCC-
Confidence 998 778886321 355666654 322 22221 122
Q ss_pred CCCCCceeeCCCCCcc-----cccceeeecccc-----------------CCCCCCCCccEEEcCCCcEEEEcCCCCccC
Q psy4771 159 PQIPNSVTVDSDGQTG-----QTEQLISMDTEI-----------------DGAKPQIPNSVTVDSDGMVYWSDSSTKYKS 216 (337)
Q Consensus 159 ~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~-----------------~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~ 216 (337)
.|+++.+++||+++ ..+.|..++... +-.....|.+++++++|++|++..-..
T Consensus 278 --~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~lds--- 352 (595)
T 1fwx_A 278 --NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDS--- 352 (595)
T ss_dssp --SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTT---
T ss_pred --CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCC---
Confidence 49999999999987 445565555321 111346799999999999998886532
Q ss_pred ceeeeeecCCccEEEEcCCC----------Cee-EEEecc-----ccceeeEEEccCCCEEEEEeCCC-CEE--------
Q psy4771 217 GLFEGLTSGSGRLIQYNPKT----------KKN-KVLIAN-----LHFANGVELSADESFVIVAETMS-SRV-------- 271 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~----------~~~-~~~~~~-----~~~p~gia~~~dg~~lyva~~~~-~~I-------- 271 (337)
.|.++|.++ .++ ..+.-+ ...+.|+++++||++||+++..+ .|+
T Consensus 353 -----------qV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~ 421 (595)
T 1fwx_A 353 -----------QVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKP 421 (595)
T ss_dssp -----------EEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCC
T ss_pred -----------cEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCC
Confidence 444444332 111 111111 23346888999999999999887 777
Q ss_pred ---EEEEeeCCCCCceeeeecCCCCCCCceeECCCCCE
Q psy4771 272 ---HRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNF 306 (337)
Q Consensus 272 ---~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l 306 (337)
..|+++|.++.-..-... .+.|-.+.++++..+
T Consensus 422 ~~~ql~dis~~~m~lv~d~p~--~~ePh~~~i~~~~~~ 457 (595)
T 1fwx_A 422 ENDQLIDISGDKMVLVHDGPT--FAEPHDAIAVHPSIL 457 (595)
T ss_dssp EEEEEEECSSSSCEEEEEEEE--SSCCCCEEEECTTTT
T ss_pred CcceEEEcCCCcEEEEEEEcC--CCCCCceEEccHHHc
Confidence 889987654432211111 245888888887755
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-07 Score=96.35 Aligned_cols=217 Identities=14% Similarity=0.187 Sum_probs=134.5
Q ss_pred EEEe-eCCeEEEEecCcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCcEEEEEcCCC
Q psy4771 67 AVVK-HKGDLYMGVDGGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 67 ~i~~-~~g~ly~d~~~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g 142 (337)
++.. .+|.||++..++-|.+++..+ ...+. ..... . ...-......+++.|++|+ |||+....||.++|++++
T Consensus 361 ~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~-~~~~~-~-~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 361 CIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYT-LQEDE-S-ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp EEEECTTSCEEEEESSSCEEEECTTTCCEEEEC-CC--------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred EEEECCCCCEEEEECCCCeEEEcCCCCcEEEEe-cCCCC-c-ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 4444 578999888886799998743 32221 00000 0 0000123466899999999 999976688999999988
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcc--cccceeeecccc------C------CCCCCCCccEEEcCCCcEEEE
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEI------D------GAKPQIPNSVTVDSDGMVYWS 208 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~------~------~~~~~~pn~v~vd~~G~lyvt 208 (337)
+.+.+......... .....+..|++|++. +.+++..++... . ........++..|++|++|++
T Consensus 438 ~~~~~~~~~~~l~~---~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 438 QVENFNQRNSQLVN---ENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp CEEEECTTTSCCSC---SCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred cEEEeecCCCCcCC---CeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 88776531100111 123457788888876 335666655211 0 111234578889999999988
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-----ccc--cceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-----ANL--HFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ 281 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-----~~~--~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~ 281 (337)
... .|+++|+++++. ... .++ ...++|+.+++|+ ||++... .|.+|+.+..
T Consensus 515 t~~----------------Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~--Gl~~~d~~~~-- 572 (795)
T 4a2l_A 515 GEE----------------GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE--GFYCFNEKDK-- 572 (795)
T ss_dssp ESS----------------CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS--CEEEEETTTT--
T ss_pred eCC----------------ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC--CceeECCCCC--
Confidence 752 677777766655 221 112 2456788888885 9988754 7899986532
Q ss_pred CceeeeecCCCCCCC----ceeECCCCCEEEEecCC
Q psy4771 282 GKSEVFIDGLPGLPD----NVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 282 ~~~~~~~~~~~g~Pd----gi~~d~dG~l~va~~~~ 313 (337)
..+.+.. ..|+|+ +|..|++|++|++...+
T Consensus 573 -~~~~~~~-~~gl~~~~i~~i~~d~~g~lWi~t~~G 606 (795)
T 4a2l_A 573 -QIKRYNT-TNGLPNNVVYGILEDSFGRLWLSTNRG 606 (795)
T ss_dssp -EEEEECG-GGTCSCSCEEEEEECTTSCEEEEETTE
T ss_pred -cEEEeCC-CCCCchhheEEEEECCCCCEEEEcCCc
Confidence 2333322 223444 48899999999999655
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=9e-08 Score=89.27 Aligned_cols=145 Identities=13% Similarity=0.017 Sum_probs=96.3
Q ss_pred eCCeEE-EEec----CcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC----------CcE
Q psy4771 71 HKGDLY-MGVD----GGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY----------FGL 134 (337)
Q Consensus 71 ~~g~ly-~d~~----~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~----------~gv 134 (337)
++..+| ++.. +++|+++|..+.+.+..+ +....|. ++++++| .+||++.+ +.|
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I----------~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI----------DGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE----------EECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE----------ECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 367899 6665 789999998554444322 2335585 9999999 89999742 238
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~ 213 (337)
..+|.+++++..-+.. ..|+. ......|.++++++||+ +|+++..
T Consensus 112 sviD~~t~~v~~~I~v---~~g~r-----------------------------~~~g~~P~~~a~spDGk~lyVan~~-- 157 (386)
T 3sjl_D 112 EVFDPVTLLPTADIEL---PDAPR-----------------------------FLVGTYPWMTSLTPDGKTLLFYQFS-- 157 (386)
T ss_dssp EEECTTTCCEEEEEEE---TTCCC-----------------------------CCBSCCGGGEEECTTSSEEEEEECS--
T ss_pred EEEECCCCeEEEEEEC---CCccc-----------------------------cccCCCCceEEEcCCCCEEEEEEcC--
Confidence 8999988876544321 01110 00134799999999997 9998753
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEec----cccceee----EEEccCCCEEEEEeCCCCEE
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA----NLHFANG----VELSADESFVIVAETMSSRV 271 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~----~~~~p~g----ia~~~dg~~lyva~~~~~~I 271 (337)
..+.|..+|.+++++..-.. ...+|.| +++++||+.+||+....+++
T Consensus 158 -----------~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 158 -----------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp -----------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred -----------CCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 12478899998887643322 1235666 48889998888877655665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-07 Score=93.54 Aligned_cols=183 Identities=10% Similarity=0.120 Sum_probs=121.4
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCC
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g 142 (337)
.++.. .++.||++..+ .|+++++. +...+.... .. ........+|+.|++|+|||+....||+++|++++
T Consensus 453 ~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~-~~-----~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 453 RVFYEDKNKKIWIGTHA-GVFVIDLASKKVIHHYDTS-NS-----QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ 525 (781)
T ss_dssp EEEEECTTSEEEEEETT-EEEEEESSSSSCCEEECTT-TS-----SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC
T ss_pred EEEEECCCCCEEEEECC-ceEEEeCCCCeEEecccCc-cc-----ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC
Confidence 34444 47899977774 49999873 333332111 00 01124577999999999999986688999999888
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
+++.+.. ..+. +-...+++..|++|+||++...
T Consensus 526 ~~~~~~~----~~~l--------------------------------~~~~i~~i~~d~~g~lWi~T~~----------- 558 (781)
T 3v9f_A 526 LVRKFNQ----YEGF--------------------------------CSNTINQIYRSSKGQMWLATGE----------- 558 (781)
T ss_dssp EEEEECT----TTTC--------------------------------SCSCEEEEEECTTSCEEEEETT-----------
T ss_pred eEEEccC----CCCC--------------------------------CCCeeEEEEECCCCCEEEEECC-----------
Confidence 7776642 1111 2345678999999999998753
Q ss_pred ecCCccE-EEEcCCCCeeEEEe--cccc--ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee--cCCCCC-
Q psy4771 223 TSGSGRL-IQYNPKTKKNKVLI--ANLH--FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI--DGLPGL- 294 (337)
Q Consensus 223 ~~~~G~v-~~~d~~~~~~~~~~--~~~~--~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~--~~~~g~- 294 (337)
.+ +++|+++++.+... +++. ...+++.+++| .||++. .+.|.+|+++.. ....+. ++++..
T Consensus 559 -----Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g-~lW~~t--~~Gl~~~~~~~~---~~~~~~~~dGl~~~~ 627 (781)
T 3v9f_A 559 -----GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNG-NIWAST--NTGISCYITSKK---CFYTYDHSNNIPQGS 627 (781)
T ss_dssp -----EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSS-CEEEEC--SSCEEEEETTTT---EEEEECGGGTCCSSC
T ss_pred -----CceEEECCCCCcEEEccccCCCCCceEEEEEECCCC-CEEEEc--CCceEEEECCCC---ceEEecccCCccccc
Confidence 45 88888877765543 2222 34688888888 499986 456999987532 233332 233321
Q ss_pred --CCceeECCCCCEEEEecCC
Q psy4771 295 --PDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 295 --Pdgi~~d~dG~l~va~~~~ 313 (337)
+..+..+++|++|++...+
T Consensus 628 f~~~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 628 FISGCVTKDHNGLIYFGSING 648 (781)
T ss_dssp EEEEEEEECTTSCEEEEETTE
T ss_pred cccCceEECCCCEEEEECCCc
Confidence 2357889999999999877
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-07 Score=92.51 Aligned_cols=176 Identities=11% Similarity=0.000 Sum_probs=117.5
Q ss_pred CCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcC--CCeEEEE
Q psy4771 72 KGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVT--TGQTEQL 147 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~--~g~~~~l 147 (337)
++.+| +...+++|..+|..+.+.+..+ .....|++++++++| .+||+.....|..||.. ++++..-
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i----------~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVL----------DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEE----------ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEE----------eCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence 45777 7777899999998543333222 223468999999999 68998754569999985 5543322
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc----CCCc-EEEEcCCCCccCceeeee
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD----SDGM-VYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd----~~G~-lyvtd~~~~~~~~~~~~~ 222 (337)
+. ....|.+++++ +||+ +|+++..
T Consensus 236 i~----------------------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~----------- 264 (567)
T 1qks_A 236 IK----------------------------------------IGSEARSIETSKMEGWEDKYAIAGAYW----------- 264 (567)
T ss_dssp EE----------------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEE-----------
T ss_pred Ee----------------------------------------cCCCCceeEEccccCCCCCEEEEEEcc-----------
Confidence 21 12348899999 5886 8888753
Q ss_pred ecCCccEEEEcCCCCeeEEEec--c----------ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIA--N----------LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDG 290 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~--~----------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~ 290 (337)
.+.|..+|..+.+...... + .....+|..++++..++++....++|+.++......-.... ++
T Consensus 265 ---~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~-i~- 339 (567)
T 1qks_A 265 ---PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-IS- 339 (567)
T ss_dssp ---TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-EE-
T ss_pred ---CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee-ee-
Confidence 3477788877766533221 1 11346888899988899999889999999975432111111 11
Q ss_pred CCCCCCceeECCCCC-EEEEecCC
Q psy4771 291 LPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 291 ~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
...+|.++.+|++|+ +||+....
T Consensus 340 ~~~~~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 340 AERFLHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp CCSSEEEEEECTTSCEEEEEEGGG
T ss_pred ccccccCceECCCCCEEEEEeCCC
Confidence 223578899999998 77877544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-07 Score=86.17 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=120.8
Q ss_pred CccEEEe--eCCeEEEEecCc------EEEEEeCCc-------eeEE-EecCc--cccCccccCccCCcceEEECCCCcE
Q psy4771 64 GPEAVVK--HKGDLYMGVDGG------HILKLSGGK-------LVPV-VKLGK--DCYGFKYEQQCGRPLGIKFDKNGAL 125 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~~~g------~I~~~~~~~-------~~~~-~~~g~--~~~~~~~~~~~~~P~Gl~~d~~G~l 125 (337)
-|.++++ .++.+|+....- .+-.++.++ ...+ ..+.. .| ..+....++.+|+.|+|
T Consensus 27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~------~~lvsV~~v~iD~~~rL 100 (381)
T 3q6k_A 27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTG------KELTSIYQPVIDDCRRL 100 (381)
T ss_dssp CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSS------CSSSCEEEEEECTTCEE
T ss_pred ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccc------cceEEeeEEEEcCCCcE
Confidence 5888888 688899776532 233332210 0011 12221 22 34567889999999999
Q ss_pred EEEECC-------------C---cEEEEEcCCC--eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 126 HVADAY-------------F---GLYKVNVTTG--QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 126 yVad~~-------------~---gv~~vd~~~g--~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
||.|++ . .|+.+|..++ ++...... |..++.
T Consensus 101 WVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~-----------p~~~~~-------------------- 149 (381)
T 3q6k_A 101 WVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYF-----------PTRLVE-------------------- 149 (381)
T ss_dssp EEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEEC-----------CGGGCC--------------------
T ss_pred EEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEEC-----------CHHhcc--------------------
Confidence 999975 1 2788898887 65544431 222111
Q ss_pred CCCCCCCccEEEc-C-------CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--------------cc
Q psy4771 188 GAKPQIPNSVTVD-S-------DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--------------AN 245 (337)
Q Consensus 188 ~~~~~~pn~v~vd-~-------~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--------------~~ 245 (337)
+-...++++|| . ++.+|+||.... .|.+||.++++..++. .+
T Consensus 150 --~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~--------------gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G 213 (381)
T 3q6k_A 150 --KPTYFGGFAVDVANPKGDCSETFVYITNFLRG--------------ALFIYDHKKQDSWNVTHPTFKAERPTKFDYGG 213 (381)
T ss_dssp --CGGGEEEEEEEESCTTTTSCSEEEEEEETTTT--------------EEEEEETTTTEEEEEECGGGSCCSCEEEEETT
T ss_pred --cCCccceEEEecccCCCCCCccEEEEEcCCCC--------------cEEEEECCCCcEEEEccCCCccccCcceEECC
Confidence 23568999999 2 356999998632 4555555544433322 11
Q ss_pred -----ccceeeEEEccC----CCEEEEEeCCCCEEEEEEee---CCC-CCceeeeecCCCCCCC--ceeEC-CCCCEEEE
Q psy4771 246 -----LHFANGVELSAD----ESFVIVAETMSSRVHRYYLK---GPK-QGKSEVFIDGLPGLPD--NVKRD-SKGNFLVS 309 (337)
Q Consensus 246 -----~~~p~gia~~~d----g~~lyva~~~~~~I~~~~~~---g~~-~~~~~~~~~~~~g~Pd--gi~~d-~dG~l~va 309 (337)
.....|||++|+ ++.||+.-..+.+++++..+ ... ....+.+.+. +...+ ++++| ++|++|.+
T Consensus 214 ~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~~~D~~~G~ly~~ 292 (381)
T 3q6k_A 214 KEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNR-GKYNDAIALAYDPKTKVIFFA 292 (381)
T ss_dssp EEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEEEECTTTCEEEEE
T ss_pred EEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeec-CCCCCcceEEEeCCCCeEEEE
Confidence 125689999998 89999999999999999853 222 2233333332 11234 56786 88999999
Q ss_pred ecCC
Q psy4771 310 LVCP 313 (337)
Q Consensus 310 ~~~~ 313 (337)
....
T Consensus 293 ~~~~ 296 (381)
T 3q6k_A 293 EANT 296 (381)
T ss_dssp ESSS
T ss_pred eccC
Confidence 8766
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-08 Score=94.49 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=59.4
Q ss_pred CCCCCCccEEEcCCCcEEE-EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEe
Q psy4771 189 AKPQIPNSVTVDSDGMVYW-SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAE 265 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~lyv-td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~ 265 (337)
..++.|++|++|++|+||| ||.+.... +. ........||++++.+|+++.++.. ...|+|++++||+++|||+-
T Consensus 473 ~~fnsPDnL~fd~~G~LWf~TD~~~~~~-g~--~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 473 NMFNSPDGLGFDKAGRLWILTDGDSSNA-GD--FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp TCCCCEEEEEECTTCCEEEEECCCCCCS-GG--GTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CccCCCCceEECCCCCEEEEeCCCcCcc-cc--ccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4689999999999999999 88764210 00 0112344899999999998887754 46799999999999999987
Q ss_pred CCCC
Q psy4771 266 TMSS 269 (337)
Q Consensus 266 ~~~~ 269 (337)
...+
T Consensus 550 QHPG 553 (592)
T 4a9v_A 550 QHPG 553 (592)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 5543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.9e-06 Score=76.82 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=115.6
Q ss_pred CccEEEe--eCCeEEEEe-c-CcEEEEEeCCceeEEEe-cCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEE
Q psy4771 64 GPEAVVK--HKGDLYMGV-D-GGHILKLSGGKLVPVVK-LGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYK 136 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~-~-~g~I~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~ 136 (337)
.|..+++ ++..||+.. . ++.|..+| .+.+.+.. + ..|.++.+.++| +.|++....| +..
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i-------------~~~~~~~~~~~~~~~~~~~~~dg~~~~ 191 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL-------------SSPTCYHIHPGAPSTFYLLCAQGGLAK 191 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc-------------CCCceEEEEeCCCceEEEEcCCCCEEE
Confidence 5888888 456789543 3 57899999 65544433 2 123334555555 6777765544 777
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCC--CceeeCCCC-Ccc---cccceeeeccc---------cC--C----CCCCCCc
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIP--NSVTVDSDG-QTG---QTEQLISMDTE---------ID--G----AKPQIPN 195 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P--~~v~~~~~g-~~~---~~~~v~~~~~~---------~~--~----~~~~~pn 195 (337)
+|. +++............+. .| ....+++++ +++ ..+.+..++.. ++ . .....|.
T Consensus 192 vd~-~g~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~ 267 (373)
T 2mad_H 192 TDH-AGGAAGAGLVGAMLTAA---QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG 267 (373)
T ss_pred EEC-CCcEEEEEeccccccCC---cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecC
Confidence 887 56544221100000111 01 011122222 211 11223322211 00 0 0111345
Q ss_pred c---EEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCC-EEEEEeCCCCE
Q psy4771 196 S---VTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES-FVIVAETMSSR 270 (337)
Q Consensus 196 ~---v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~-~lyva~~~~~~ 270 (337)
+ +++++||+ +|++...... .......+.|+++|.+++++..-......|.++++++||+ .+|+++...+.
T Consensus 268 g~~~~~~s~d~~~lyV~~~~~~~-----~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 268 GWQQVAYLKSSDGIYLLTSEQSA-----WKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred ceEeEEECCCCCEEEEEeccCCc-----ccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCe
Confidence 5 88999875 9997653110 0001234689999999888744444445799999999999 89999888899
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
|.+|+.+..+.. ..... ....|.+|..
T Consensus 343 V~ViD~~t~~vv--~~i~~-vG~~P~~~~~ 369 (373)
T 2mad_H 343 LHIYDAGAGDQD--QSTVE-LGSGPQVLSV 369 (373)
T ss_pred EEEEECCCCCEE--eeecC-CCCCCcEEEE
Confidence 999998654321 11111 2235887765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-07 Score=80.02 Aligned_cols=201 Identities=14% Similarity=0.179 Sum_probs=118.4
Q ss_pred EEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEE
Q psy4771 68 VVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQ 146 (337)
Q Consensus 68 i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~ 146 (337)
+++ .++.+|+...+ |++++..... +..+.. . ........++ +|+||++....+++.+|++ |+...
T Consensus 65 ~~~~~~g~l~v~t~~--l~~~d~~g~~-~~~~~~--------~-~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 65 PSIGKDGTIYFGSDK--VYAINPDGTE-KWRFDT--------K-KAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp CEETTTTEECCSSCE--EEEECCCGGG-GGGSCC--------------CCEEEE-TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred eEEecCCcEEEecCc--EEEECCCCcE-EEEEEC--------C-CCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 344 47889966544 8888762111 100100 0 0111233444 7899999766679999998 55443
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcc--c-ccceeeeccccCC-----CCCCCCccEEEcCCCcEEEEcCCCCccCce
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTG--Q-TEQLISMDTEIDG-----AKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~-~~~v~~~~~~~~~-----~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~ 218 (337)
.... ... ....++++++|+++ + .+++..++..... ........+++|++|++|++. .
T Consensus 131 ~~~~----~~~---~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-~------- 195 (330)
T 3hxj_A 131 RFKT----KKA---IYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS-D------- 195 (330)
T ss_dssp EEEC----SSC---CCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES-S-------
T ss_pred EEcC----CCc---eeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe-C-------
Confidence 3221 111 23456778888887 3 3567766644100 112346778899999999887 3
Q ss_pred eeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCc
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdg 297 (337)
.|+++|. +++.. ...........++++++| .||++.. .+.|.+++.++.. ...+.. ....+..
T Consensus 196 ---------~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~-~~gl~~~~~~g~~---~~~~~~-~~~~~~~ 259 (330)
T 3hxj_A 196 ---------KVYAINP-DGTEKWNFYAGYWTVTRPAISEDG-TIYVTSL-DGHLYAINPDGTE---KWRFKT-GKRIESS 259 (330)
T ss_dssp ---------SEEEECT-TSCEEEEECCSSCCCSCCEECTTS-CEEEEET-TTEEEEECTTSCE---EEEEEC-SSCCCSC
T ss_pred ---------EEEEECC-CCcEEEEEccCCcceeceEECCCC-eEEEEcC-CCeEEEECCCCCE---eEEeeC-CCCcccc
Confidence 6788884 44332 222223456788888887 5888875 4688888644321 111211 2234667
Q ss_pred eeECCCCCEEEEecCC
Q psy4771 298 VKRDSKGNFLVSLVCP 313 (337)
Q Consensus 298 i~~d~dG~l~va~~~~ 313 (337)
+.+|.+|++|++...+
T Consensus 260 ~~~~~~g~l~v~t~~g 275 (330)
T 3hxj_A 260 PVIGNTDTIYFGSYDG 275 (330)
T ss_dssp CEECTTSCEEEECTTC
T ss_pred ceEcCCCeEEEecCCC
Confidence 8899999999999774
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.9e-06 Score=73.24 Aligned_cols=215 Identities=16% Similarity=0.097 Sum_probs=125.7
Q ss_pred ccEEEe-eCCe-EEEEecCcEEEEEeCCc-eeEEEecCccccCccccCccCCcceEEECCCCcE-EEEEC----CCcEEE
Q psy4771 65 PEAVVK-HKGD-LYMGVDGGHILKLSGGK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGAL-HVADA----YFGLYK 136 (337)
Q Consensus 65 P~~i~~-~~g~-ly~d~~~g~I~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~l-yVad~----~~gv~~ 136 (337)
..++++ .++. +++. .++.|+.|+..+ ........ ......+..++++++|+. +++.. ...|+.
T Consensus 44 v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVDT--------GFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp CEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEECCC--------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEecc--------ccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 445666 4555 4444 478899998643 22221110 011245678999999954 44442 134899
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----ccc--ceeeeccccCC-----CCCCCCccEEEcCCCc
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTE--QLISMDTEIDG-----AKPQIPNSVTVDSDGM 204 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~--~v~~~~~~~~~-----~~~~~pn~v~vd~~G~ 204 (337)
++.++++...+... . ....++++++|+.+ ..+ .+..++..... .....+..++++++|+
T Consensus 115 ~~~~~~~~~~~~~~----~-----~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 115 LPSTGGTPRLMTKN----L-----PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp EETTCCCCEECCSS----S-----SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred EECCCCceEEeecC----C-----CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 99887776555431 1 13456788899865 112 34443211000 1123467889999987
Q ss_pred -EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC----------CCEEEE
Q psy4771 205 -VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM----------SSRVHR 273 (337)
Q Consensus 205 -lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~----------~~~I~~ 273 (337)
++++.... ....||.++..++....+.........++++|||+.|+++... ..+|+.
T Consensus 186 ~l~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 186 WIYFNSSRT------------GQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp EEEEEECTT------------SSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred EEEEEecCC------------CCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 66554321 1237888887767666555444556789999999988776643 257888
Q ss_pred EEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEe
Q psy4771 274 YYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
+++++.+......+.. ..+....++++++|+ |+++.
T Consensus 254 ~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 254 MDMDGGNVETLFDLFG-GQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp EETTSCSCEEEEEEEE-STTTSCSCCBCTTSSEEEEEE
T ss_pred EecCCCCceeeeccCC-CCcccccceECCCCCEEEEEE
Confidence 8886543222221112 234467889999998 44443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-05 Score=73.14 Aligned_cols=210 Identities=11% Similarity=0.052 Sum_probs=126.3
Q ss_pred ccCccEEEe-eCCeEE-EEecC---------------cEEEEEeC--C--ceeEEEecCccccCccccCccCCcceEEEC
Q psy4771 62 IHGPEAVVK-HKGDLY-MGVDG---------------GHILKLSG--G--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFD 120 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly-~d~~~---------------g~I~~~~~--~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d 120 (337)
+....++.+ ..+.|| .|.+. -+|+.+|. + ++.....+.... ......-+.|++|
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~-----~~~~S~l~di~VD 160 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRL-----VEKPTYFGGFAVD 160 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGG-----CCCGGGEEEEEEE
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHh-----cccCCccceEEEe
Confidence 446777777 578999 77651 26888886 4 443333343221 1122346789998
Q ss_pred -C-------CCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCC-ceeeCCCCCcccccceeeeccccCCCC
Q psy4771 121 -K-------NGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPN-SVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 121 -~-------~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~-~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
. ++.+||+|.. .+|+.+|..+++..++..... .|+ ...+.-+| .-++ -
T Consensus 161 ~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~--------~pd~~~~~~i~G------~~~~--------~ 218 (381)
T 3q6k_A 161 VANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTF--------KAERPTKFDYGG------KEYE--------F 218 (381)
T ss_dssp ESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGG--------SCCSCEEEEETT------EEEE--------E
T ss_pred cccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCC--------ccccCcceEECC------EEeE--------e
Confidence 2 4589999976 469999999998887764211 122 00000001 0000 0
Q ss_pred CCCCccEEEcCC----Cc-EEEEcCCCCccCceeeeeecCCccEEEEcC------C-CCeeEEEeccc--cceeeEEEc-
Q psy4771 191 PQIPNSVTVDSD----GM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNP------K-TKKNKVLIANL--HFANGVELS- 255 (337)
Q Consensus 191 ~~~pn~v~vd~~----G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~------~-~~~~~~~~~~~--~~p~gia~~- 255 (337)
....++|+++++ ++ |||.-.++. ++|++.. . ..+++.+-+.. ....+++++
T Consensus 219 ~~Gi~gIaLsp~~~~~~~~LYf~plss~--------------~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~ 284 (381)
T 3q6k_A 219 KAGIFGITLGDRDSEGNRPAYYLAGSAI--------------KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDP 284 (381)
T ss_dssp CCCEEEEEECCCCTTSCCEEEEEESSCS--------------EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECT
T ss_pred ccCceEEEecCCcCCCCeEEEEEECCCC--------------cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeC
Confidence 135789999986 54 999887754 3343321 0 12333333222 223356776
Q ss_pred cCCCEEEEEeCCCCEEEEEEeeC-CC-CCceeeeecCC-CCCCCceeECCCCCEEEEecCC
Q psy4771 256 ADESFVIVAETMSSRVHRYYLKG-PK-QGKSEVFIDGL-PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 256 ~dg~~lyva~~~~~~I~~~~~~g-~~-~~~~~~~~~~~-~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.+| .||+++...+.|.+++.++ .- ..+.++++... --+|+++++|.+|.||+....-
T Consensus 285 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~l 344 (381)
T 3q6k_A 285 KTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGF 344 (381)
T ss_dssp TTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECSC
T ss_pred CCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECcc
Confidence 455 8999999999999999765 21 23445555421 1269999999999999998543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.6e-06 Score=82.23 Aligned_cols=217 Identities=18% Similarity=0.145 Sum_probs=126.7
Q ss_pred eCCeEEEEecCcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEe
Q psy4771 71 HKGDLYMGVDGGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~ 148 (337)
.+|.||++..+| +++++..+ ...+..+...... ..-.......|..|++|+|||+. ..||.++|+++++.+.+.
T Consensus 333 ~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~ 408 (758)
T 3ott_A 333 SKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKT--YPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYN 408 (758)
T ss_dssp TTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSS--SCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEeeCCc-ceeecccccccceeEEeccCCcC--CCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEee
Confidence 578999777665 88987632 1111111100000 00112346789999999999997 468999999988877664
Q ss_pred ccccccCCC-CCCCCCceeeCCCCCcc--c-ccceeeecccc------------------CCCCCCCCccEEEcCCCcEE
Q psy4771 149 SMDTEIDGA-KPQIPNSVTVDSDGQTG--Q-TEQLISMDTEI------------------DGAKPQIPNSVTVDSDGMVY 206 (337)
Q Consensus 149 ~~~~~~~g~-~~~~P~~v~~~~~g~~~--~-~~~v~~~~~~~------------------~~~~~~~pn~v~vd~~G~ly 206 (337)
... ..+. ....-..+..|++|++. + .+++..++.+. .+..-....++..|++|+||
T Consensus 409 ~~~--~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 486 (758)
T 3ott_A 409 IVD--NTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVW 486 (758)
T ss_dssp EEC--CC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEE
T ss_pred cCC--CcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEE
Confidence 210 1110 00011246678888876 3 35676665221 11112345678899999999
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG 282 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~ 282 (337)
+..... +.|+++|+++++.+..... ...++.+..+.+| .||++.. +.|.+|+.+.....
T Consensus 487 i~~~t~--------------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~lWigt~--~Gl~~~~~~~~~~~ 549 (758)
T 3ott_A 487 VLLYNN--------------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG-LLWVGFH--GGVMRINPKDESQQ 549 (758)
T ss_dssp EEETTC--------------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS-CEEEEET--TEEEEECC--CCCC
T ss_pred EEccCC--------------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC-CEEEEec--CceEEEecCCCceE
Confidence 822111 2689999988877665321 2356788888888 5999874 47999987654322
Q ss_pred ceeeeecCCCC-CCCceeECCCCCEEEEecCC
Q psy4771 283 KSEVFIDGLPG-LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 283 ~~~~~~~~~~g-~Pdgi~~d~dG~l~va~~~~ 313 (337)
... .++++. ...+|..+ +|+||++...+
T Consensus 550 ~~~--~~gl~~~~i~~i~~~-~g~lWi~t~~G 578 (758)
T 3ott_A 550 SIS--FGSFSNNEILSMTCV-KNSIWVSTTNG 578 (758)
T ss_dssp BCC--CCC---CCEEEEEEE-TTEEEEEESSC
T ss_pred Eec--ccCCCccceEEEEEC-CCCEEEECCCC
Confidence 211 122321 23456555 78999998666
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-05 Score=74.96 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=92.2
Q ss_pred CCcceEEECCCCc-EEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 112 GRPLGIKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+....++++|+|+ |+++... ..|+.+|.++++...+..
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-------------------------------------- 264 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-------------------------------------- 264 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC--------------------------------------
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC--------------------------------------
Confidence 3467899999995 6645432 239999998887655432
Q ss_pred CCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 188 GAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.......+++++||+ |+++.... ....|+.+|..+++...+.........++++|||+.|+++..
T Consensus 265 --~~~~~~~~~~spdg~~l~~~s~~~------------g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 265 --GRSNNTEPTWFPDSQNLAFTSDQA------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp --CSSCEEEEEECTTSSEEEEEECTT------------SSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred --CCCcccceEECCCCCEEEEEECCC------------CCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEEC
Confidence 112356788999997 66554321 123789999888876655444456678999999999988775
Q ss_pred C--CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 267 M--SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 267 ~--~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
. ...|+.+++++.. ...+... .....+++.++|+
T Consensus 331 ~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~spdg~ 366 (415)
T 2hqs_A 331 NGGQQHIAKQDLATGG---VQVLSST--FLDETPSLAPNGT 366 (415)
T ss_dssp CSSCEEEEEEETTTCC---EEECCCS--SSCEEEEECTTSS
T ss_pred cCCceEEEEEECCCCC---EEEecCC--CCcCCeEEcCCCC
Confidence 4 3588888876532 2333322 2467788899987
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-05 Score=69.05 Aligned_cols=177 Identities=8% Similarity=-0.039 Sum_probs=110.9
Q ss_pred cEEEe-eC-CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCC
Q psy4771 66 EAVVK-HK-GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~-g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g 142 (337)
.++++ .+ ..+++...++.|..|+..+...+..+. ........++++++|+.+++-... .|..+|..++
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee---------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 34555 34 355677788888888864333332221 122457789999998555554344 4888898777
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
+...... .......++++++|..+++...
T Consensus 216 ~~~~~~~----------------------------------------~~~~v~~~~~s~~~~~l~~~~~----------- 244 (337)
T 1gxr_A 216 RQLQQHD----------------------------------------FTSQIFSLGYCPTGEWLAVGME----------- 244 (337)
T ss_dssp EEEEEEE----------------------------------------CSSCEEEEEECTTSSEEEEEET-----------
T ss_pred ceEeeec----------------------------------------CCCceEEEEECCCCCEEEEEcC-----------
Confidence 6544332 1123578889998875443322
Q ss_pred ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
+|.|..+|..+++...+.........+++++|++.|+++. ..+.|..+++...+ ...... .......+++++
T Consensus 245 ---~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~---~~~~~~-~~~~v~~~~~s~ 316 (337)
T 1gxr_A 245 ---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGA---SIFQSK-ESSSVLSCDISV 316 (337)
T ss_dssp ---TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC---EEEEEE-CSSCEEEEEECT
T ss_pred ---CCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec-CCCcEEEEECCCCe---EEEEec-CCCcEEEEEECC
Confidence 3578888888777655555556778999999998666554 46789999876432 111111 233467888999
Q ss_pred CCCEEEEe
Q psy4771 303 KGNFLVSL 310 (337)
Q Consensus 303 dG~l~va~ 310 (337)
+|++.++.
T Consensus 317 ~~~~l~~~ 324 (337)
T 1gxr_A 317 DDKYIVTG 324 (337)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 99855544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-05 Score=73.88 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=92.6
Q ss_pred CCcceEEECCCCc-EEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 112 GRPLGIKFDKNGA-LHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
.....+++.|+|+ |+++.... .|+.+|.++++...+...
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~------------------------------------- 221 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF------------------------------------- 221 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-------------------------------------
Confidence 3467899999994 55554332 588999988877665421
Q ss_pred CCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 188 GAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
......++++|||+ |+++.... ....|+.+|.++++...+.........++++|||+.|+++..
T Consensus 222 ---~~~~~~~~~spdg~~la~~~~~~------------g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 222 ---PRHNGAPAFSPDGSKLAFALSKT------------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ---SSCEEEEEECTTSSEEEEEECTT------------SSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred ---CCcccCEEEcCCCCEEEEEEecC------------CCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC
Confidence 12357889999997 66555431 123799999988887666555556778999999998887764
Q ss_pred C--CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCE
Q psy4771 267 M--SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNF 306 (337)
Q Consensus 267 ~--~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l 306 (337)
. ..+|+++++++.. ...+.. .......+++++||+.
T Consensus 287 ~~g~~~i~~~d~~~~~---~~~l~~-~~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGA---PQRITW-EGSQNQDADVSSDGKF 324 (415)
T ss_dssp TTSSCEEEEEETTSSC---CEECCC-SSSEEEEEEECTTSSE
T ss_pred CCCCcEEEEEECCCCC---EEEEec-CCCcccCeEECCCCCE
Confidence 3 3478888876543 222221 1223456788888873
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00019 Score=64.58 Aligned_cols=228 Identities=13% Similarity=-0.002 Sum_probs=127.7
Q ss_pred ccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 65 PEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
-.++++ .++ .|++...+|.|..|+..+...+..+. .......+++++++|+.+++-...+ |..+|..+
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD---------GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh---------hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 455666 344 56688889999999864333333332 1224467899999996665544444 88889887
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cc-----cceeeeccccCCC-------------------CCCC
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QT-----EQLISMDTEIDGA-------------------KPQI 193 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~-----~~v~~~~~~~~~~-------------------~~~~ 193 (337)
++....... .. ....++++++|+.+ .. +.|...+...... ....
T Consensus 106 ~~~~~~~~~----~~----~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 106 GQCVATWKS----PV----PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp CCEEEEEEC----SS----CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred CcEEEEeec----CC----CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 765544431 11 14557788888876 21 3343333211110 0014
Q ss_pred CccEEEcCCCcEEE----------EcCCCCc---------cCce----------eeeeecCCccEEEEcCCCCeeEEEec
Q psy4771 194 PNSVTVDSDGMVYW----------SDSSTKY---------KSGL----------FEGLTSGSGRLIQYNPKTKKNKVLIA 244 (337)
Q Consensus 194 pn~v~vd~~G~lyv----------td~~~~~---------~~~~----------~~~~~~~~G~v~~~d~~~~~~~~~~~ 244 (337)
...++++++|+..+ -|..... ...+ ..+....+|.|..+|..+++......
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 55666666654222 2222100 0111 11223445677888877776555454
Q ss_pred cccceeeEEEccCCCEEEEEeCCCC-------------EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 245 NLHFANGVELSADESFVIVAETMSS-------------RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 245 ~~~~p~gia~~~dg~~lyva~~~~~-------------~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.-.....++++++++.++++..... .|..++..... ....+.. ..+....+++.++|++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~-~~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE--EIGRVQG-HFGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC--EEEEEEC-CSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc--chhheec-ccCcEEEEEECCCCCEEEEEc
Confidence 5556788999999998888876543 56666653221 1222222 233467788999998666654
Q ss_pred C
Q psy4771 312 C 312 (337)
Q Consensus 312 ~ 312 (337)
.
T Consensus 335 ~ 335 (369)
T 3zwl_B 335 E 335 (369)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-05 Score=69.24 Aligned_cols=215 Identities=11% Similarity=0.050 Sum_probs=125.1
Q ss_pred ccEEEe-e-CC-eEEEEecCcEEEEEeCCce-------eEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC-
Q psy4771 65 PEAVVK-H-KG-DLYMGVDGGHILKLSGGKL-------VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF- 132 (337)
Q Consensus 65 P~~i~~-~-~g-~ly~d~~~g~I~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~- 132 (337)
-.++++ . ++ .|++...+|.|..|+.... ..+..+ .........+++.++| +++++-...
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL---------EGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE---------ECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe---------cCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 355666 3 44 4558888999988875221 111111 1223457799999998 566664444
Q ss_pred cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-------c-CCCCCCCCccEEEc
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE-------I-DGAKPQIPNSVTVD 200 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~-------~-~~~~~~~pn~v~vd 200 (337)
.|...|..+++........ ...+ ....++++++|+++ .++.|...+.. + .......+..+++.
T Consensus 155 ~i~iwd~~~~~~~~~~~~~-~~~~----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPD-VHPD----TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp CEEEEETTTTEEEEEECTT-TCCS----CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred EEEEEECCCCCccEEEecC-CCCC----ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 4888898877655443100 1111 13557888888877 22334433311 1 11112236788899
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
++|.++++.... ..+|.|..+|..+++. ............+++++|++.|+++....+.|..+++.
T Consensus 230 ~~~~~l~~g~~~-----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 230 SEGKILTTGFSR-----------MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp STTEEEEEEECT-----------TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred CCCcEEEEeccC-----------CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 998866554210 1245788888776542 11223344578899999999999988878899999987
Q ss_pred CCCC--CceeeeecCCCCCCCceeECCCCCE
Q psy4771 278 GPKQ--GKSEVFIDGLPGLPDNVKRDSKGNF 306 (337)
Q Consensus 278 g~~~--~~~~~~~~~~~g~Pdgi~~d~dG~l 306 (337)
.... .....+. ..+...++++.++|.+
T Consensus 299 ~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~ 327 (402)
T 2aq5_A 299 SEAPFLHYLSMFS--SKESQRGMGYMPKRGL 327 (402)
T ss_dssp SSTTCEEEEEEEC--CSSCCSEEEECCGGGS
T ss_pred CCCcceEeecccc--cCCcccceEEeccccc
Confidence 5431 1112111 1233567777766643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00015 Score=67.29 Aligned_cols=148 Identities=7% Similarity=-0.040 Sum_probs=94.5
Q ss_pred CCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+...++++.++|+++++-.. ..|..+|..+++....... .
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------------------------------~ 258 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---------------------------------------H 258 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC---------------------------------------C
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC---------------------------------------C
Confidence 44678889888865555433 3477788776544332210 1
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEe-CCC
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAE-TMS 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~-~~~ 268 (337)
......+++.++|. ++++..+. .+|.|..+|..+++.......-.....++++++++.++++. ...
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs------------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGT------------MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD 326 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCT------------TTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT
T ss_pred cceEEEEEECCCCCCEEEEecCC------------CCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC
Confidence 23468899999764 66654321 24688888888776655555556678999999999887764 357
Q ss_pred CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 269 SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
+.|..+++..........+. +..+....++++++|.+.++..
T Consensus 327 g~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 327 NNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp CEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEEC
T ss_pred CcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEe
Confidence 89999998753221111122 2234467889999998555543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-05 Score=68.45 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=90.9
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCC-CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTT-GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~-g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....+++++++|+.+++.....|+.+|.++ ++...+... . .
T Consensus 42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~----~----------------------------------~ 83 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTG----F----------------------------------A 83 (297)
T ss_dssp SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCT----T----------------------------------C
T ss_pred cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccc----c----------------------------------c
Confidence 446789999999765554445699999887 765554320 0 1
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
...+++++++++|+ ++++.... +....|+.++..+++...+.. ......++++||++.|+++....+
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~ 151 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVE-----------FGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQ 151 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTT-----------TSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETT
T ss_pred cccccceEECCCCCEEEEEEeCC-----------CCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCC
Confidence 23467899999997 44444221 124589999887776554433 334788899999998886665555
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEe
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
.+..+.++-. .+....+.. ..+.+..++++++|+ ++++.
T Consensus 152 ~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 152 VFDIYSMDID-SGVETRLTH-GEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEEEEEEETT-TCCEEECCC-SSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEEECC-CCcceEccc-CCCccccceECCCCCEEEEEe
Confidence 4444444311 112222222 234467788888887 44443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.7e-05 Score=77.79 Aligned_cols=177 Identities=13% Similarity=0.148 Sum_probs=102.2
Q ss_pred CCcceEEECCCCc-EEEEE---------------------------------CCCcEEEEEcCCCeEEEEeccccccCCC
Q psy4771 112 GRPLGIKFDKNGA-LHVAD---------------------------------AYFGLYKVNVTTGQTEQLISMDTEIDGA 157 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad---------------------------------~~~gv~~vd~~~g~~~~l~~~~~~~~g~ 157 (337)
.++.+++++|||+ |+++. ....|+.+|.++++...+.... ...
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~- 257 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE--PKE- 257 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS--CTT-
T ss_pred CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC--CCc-
Confidence 4568999999994 55553 1123888898888766554210 000
Q ss_pred CCCCCCceeeCCCCCcc---ccc------ceeeecccc-----------CCCCCCCCccEEEcC--CCcEEEEcCCCCcc
Q psy4771 158 KPQIPNSVTVDSDGQTG---QTE------QLISMDTEI-----------DGAKPQIPNSVTVDS--DGMVYWSDSSTKYK 215 (337)
Q Consensus 158 ~~~~P~~v~~~~~g~~~---~~~------~v~~~~~~~-----------~~~~~~~pn~v~vd~--~G~lyvtd~~~~~~ 215 (337)
..+..++.++||+.+ ..+ .|...+... ........+++++.+ ||+++++....
T Consensus 258 --~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~--- 332 (706)
T 2z3z_A 258 --KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD--- 332 (706)
T ss_dssp --CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT---
T ss_pred --eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC---
Confidence 124568889999865 111 333332110 000111236789999 99844433221
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEeccccceee-EEEccCCCEEEEEeCCCC----EEEEEEeeCCCCCceeeeecC
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANG-VELSADESFVIVAETMSS----RVHRYYLKGPKQGKSEVFIDG 290 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~g-ia~~~dg~~lyva~~~~~----~I~~~~~~g~~~~~~~~~~~~ 290 (337)
...+||.++.+++..+.+..+-..... +++++||+.||++....+ +|++++.++.. ...+..
T Consensus 333 ---------g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~- 399 (706)
T 2z3z_A 333 ---------GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLTP- 399 (706)
T ss_dssp ---------SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESCC-
T ss_pred ---------CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceeccC-
Confidence 123788888766665555443222334 799999999998887654 78888765432 222221
Q ss_pred CCCCCCceeECCCCCEEEEe
Q psy4771 291 LPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 291 ~~g~Pdgi~~d~dG~l~va~ 310 (337)
. +....+++++||+.++..
T Consensus 400 ~-~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 400 E-SGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp S-SSEEEEEECTTSSEEEEE
T ss_pred C-CceEEEEECCCCCEEEEE
Confidence 1 224567888888755544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00013 Score=64.95 Aligned_cols=179 Identities=9% Similarity=0.076 Sum_probs=112.9
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCcee--EEEecCccccCccccCccCCcceEEECCCCcEEEE-ECCCcEEEEEcC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLV--PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVA-DAYFGLYKVNVT 140 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVa-d~~~gv~~vd~~ 140 (337)
.++++ .++ .+++...++.|..|+..... ....+. ........+++.++|+.+++ .....|..+|..
T Consensus 101 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~ 171 (337)
T 1gxr_A 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT---------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE---------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc---------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 45556 344 56688889999999863221 222221 12234678999999855544 433458888987
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceee
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~ 220 (337)
+++...... + .-.....++++++|..+++...
T Consensus 172 ~~~~~~~~~------~---------------------------------~~~~i~~~~~~~~~~~l~~~~~--------- 203 (337)
T 1gxr_A 172 NQTLVRQFQ------G---------------------------------HTDGASCIDISNDGTKLWTGGL--------- 203 (337)
T ss_dssp TTEEEEEEC------C---------------------------------CSSCEEEEEECTTSSEEEEEET---------
T ss_pred CCceeeeee------c---------------------------------ccCceEEEEECCCCCEEEEEec---------
Confidence 776544332 0 1224678899998875544322
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
+|.|..+|..+++.......-.....++++++++.|+++.. .+.|..+++.... ...+.. ..+....+++
T Consensus 204 -----dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~~~~---~~~~~~-~~~~v~~~~~ 273 (337)
T 1gxr_A 204 -----DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNKPD---KYQLHL-HESCVLSLKF 273 (337)
T ss_dssp -----TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTSSC---EEEECC-CSSCEEEEEE
T ss_pred -----CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCCCC---eEEEcC-CccceeEEEE
Confidence 45888889887776555544556788999999987777654 5688889876432 222222 2344678899
Q ss_pred CCCCCEEEEec
Q psy4771 301 DSKGNFLVSLV 311 (337)
Q Consensus 301 d~dG~l~va~~ 311 (337)
+++|++.++..
T Consensus 274 ~~~~~~l~~~~ 284 (337)
T 1gxr_A 274 AYCGKWFVSTG 284 (337)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEec
Confidence 99998555543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-06 Score=79.29 Aligned_cols=180 Identities=16% Similarity=0.268 Sum_probs=103.3
Q ss_pred CceeccCcccCccEEEe-eCC--eEEEEecCcEEEEEeC-Cce--eEEEecCcc-ccCccccCccCCcceEEECCC----
Q psy4771 54 AEKLFENEIHGPEAVVK-HKG--DLYMGVDGGHILKLSG-GKL--VPVVKLGKD-CYGFKYEQQCGRPLGIKFDKN---- 122 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g--~ly~d~~~g~I~~~~~-~~~--~~~~~~g~~-~~~~~~~~~~~~P~Gl~~d~~---- 122 (337)
++.++++ +..|.+|++ .+| .+|+....|+|++++. +.. ..+..+... ..+.. ....+.+.||+++|+
T Consensus 6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~-~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIK-GGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCS-SSCCCSEEEEEECTTHHHH
T ss_pred EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCcc-ccCCCcceeeEeCCCCcCC
Confidence 3445554 678999998 666 4998888999999975 322 122222110 00000 011355889999996
Q ss_pred CcEEEEECC-------------CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc--cc-cceeeecccc
Q psy4771 123 GALHVADAY-------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--QT-EQLISMDTEI 186 (337)
Q Consensus 123 G~lyVad~~-------------~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~-~~v~~~~~~~ 186 (337)
|.|||+-+. ..|.++....+. .+.. .. ..|+.+.
T Consensus 84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~---------------------------~~~~d~~~~~~i~~~~--- 133 (463)
T 2wg3_C 84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKN---------------------------PHQVDLRTARVFLEVA--- 133 (463)
T ss_dssp CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTC---------------------------TTSBCGGGCEEEEEEE---
T ss_pred CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCC---------------------------CCccCCCCceEEEEcC---
Confidence 799998531 124444332110 0000 00 0111110
Q ss_pred CCCCCCCCccEEEcCCCcEEEEcCCCCc----cCceeeeeecCCccEEEEcCCCC--------------------eeEEE
Q psy4771 187 DGAKPQIPNSVTVDSDGMVYWSDSSTKY----KSGLFEGLTSGSGRLIQYNPKTK--------------------KNKVL 242 (337)
Q Consensus 187 ~~~~~~~pn~v~vd~~G~lyvtd~~~~~----~~~~~~~~~~~~G~v~~~d~~~~--------------------~~~~~ 242 (337)
..........|++++||+|||+--.... ....+ -.....|.|+|+|+++. ..++.
T Consensus 134 ~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q-~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~ 212 (463)
T 2wg3_C 134 ELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMD-GLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF 212 (463)
T ss_dssp ESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCT-TCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE
T ss_pred CCCCcccCCcEeECCCCcEEEEeCCCCCCCCcccccc-CcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE
Confidence 0112234678999999999998654321 00000 01345689999999863 24577
Q ss_pred eccccceeeEEEccC-----CC-EEEEEeC
Q psy4771 243 IANLHFANGVELSAD-----ES-FVIVAET 266 (337)
Q Consensus 243 ~~~~~~p~gia~~~d-----g~-~lyva~~ 266 (337)
..++..|.|++|+++ |+ ++|++|.
T Consensus 213 a~G~RNp~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 213 AHGLHDPGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp EECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred EECCCCcceEEECCCCCCcccceEEEeccc
Confidence 889999999999997 33 6888886
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-06 Score=80.12 Aligned_cols=140 Identities=11% Similarity=-0.026 Sum_probs=90.9
Q ss_pred eEEECCCC--cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 116 GIKFDKNG--ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 116 Gl~~d~~G--~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
..++.++| .+|++....++..+|.++++.+.+... ..
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~---------------------------------------~~-- 152 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL---------------------------------------PG-- 152 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE---------------------------------------SS--
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC---------------------------------------CC--
Confidence 34555555 466665555666778888887766531 11
Q ss_pred CccEEEcCCCcEEE-EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-CEE
Q psy4771 194 PNSVTVDSDGMVYW-SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS-SRV 271 (337)
Q Consensus 194 pn~v~vd~~G~lyv-td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~-~~I 271 (337)
++++++|||+..+ +... ....+.|+.+|.++++.+.+.......+.++++|||+.|+.++... .+|
T Consensus 153 -~~~~~spDG~~la~~~~~-----------~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i 220 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFF-----------GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARL 220 (582)
T ss_dssp -CEEEEEEETTEEEEEEEE-----------ETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEE
T ss_pred -ceEEECCCCCEEEEEEEc-----------CCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEE
Confidence 7889999998443 3221 1112479999998888877766555668999999999999666543 378
Q ss_pred EEEEeeCCCCCceeeeecCCCCCCCcee--------ECCCCCEEEEecC
Q psy4771 272 HRYYLKGPKQGKSEVFIDGLPGLPDNVK--------RDSKGNFLVSLVC 312 (337)
Q Consensus 272 ~~~~~~g~~~~~~~~~~~~~~g~Pdgi~--------~d~dG~l~va~~~ 312 (337)
+++++++++ .. ........+.+++ +++||.+|++...
T Consensus 221 ~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 221 VTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp EEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred EEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 888876542 22 2222223344566 8999987776643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00022 Score=64.33 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=110.4
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g 142 (337)
.++.+ .++ .+.+...++.|..|+..+...+..+. ........+++.++|+.+++-...+ +..++.+++
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID---------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe---------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 34555 344 45588889999999864333332221 1113356799999997777755544 777887766
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
+....... .......++++++|+..++-.
T Consensus 155 ~~~~~~~~---------------------------------------~~~~v~~~~~spdg~~lasg~------------ 183 (321)
T 3ow8_A 155 KKEYSLDT---------------------------------------RGKFILSIAYSPDGKYLASGA------------ 183 (321)
T ss_dssp SEEEEEEC---------------------------------------SSSCEEEEEECTTSSEEEEEE------------
T ss_pred ceeEEecC---------------------------------------CCceEEEEEECCCCCEEEEEc------------
Confidence 54333210 122357889999998655433
Q ss_pred ecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeEC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
.+|.|..+|..+++......+ -...+.++++||++.|+ +-...+.|..+++.... ....+. +..+....+++.
T Consensus 184 --~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-s~s~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~~~~s 257 (321)
T 3ow8_A 184 --IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV-TASDDGYIKIYDVQHAN--LAGTLS-GHASWVLNVAFC 257 (321)
T ss_dssp --TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEE-EECTTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEEC
T ss_pred --CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEE-EEcCCCeEEEEECCCcc--eeEEEc-CCCCceEEEEEC
Confidence 246888888888765444443 33458899999997554 44556788888875432 122222 222335678888
Q ss_pred CCCCEEEEec
Q psy4771 302 SKGNFLVSLV 311 (337)
Q Consensus 302 ~dG~l~va~~ 311 (337)
++|.+.++..
T Consensus 258 p~~~~l~s~s 267 (321)
T 3ow8_A 258 PDDTHFVSSS 267 (321)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 8888655544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-05 Score=80.92 Aligned_cols=178 Identities=16% Similarity=0.160 Sum_probs=109.0
Q ss_pred EEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 67 AVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 67 ~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
++.. .+|.||+...+| +++++..+.. +..... ........+. +.+|+|||+.. .|++++|++++++.
T Consensus 67 ~i~~d~~g~lWigT~~G-l~~yd~~~~~-f~~~~~--------~~~~~i~~i~-~~~g~lWigt~-~Gl~~~~~~~~~~~ 134 (758)
T 3ott_A 67 CGVIIDNTYLYMGTDNG-ILVYNYRADR-YEQPET--------DFPTDVRTMA-LQGDTLWLGAL-NGLYTYQLQSRKLT 134 (758)
T ss_dssp EEEEETTTEEEEEETTE-EEEEETTTTE-ECCCSC--------CCCSCEEEEE-EETTEEEEEET-TEEEEEETTTCCEE
T ss_pred EEEEcCCCcEEEEeCCC-eEEEeCCCCE-EECccc--------CCCceEEEEE-ecCCcEEEEcC-CcceeEeCCCCeEE
Confidence 4444 578999887776 8999974321 211000 0111233454 35789999974 49999999887776
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecC
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~ 225 (337)
.+... ..+. +......+..|++|+||+....
T Consensus 135 ~~~~~---~~~l--------------------------------~~~~i~~i~~d~~g~lWigt~~-------------- 165 (758)
T 3ott_A 135 SFDTR---RNGL--------------------------------PNNTIYSIIRTKDNQIYVGTYN-------------- 165 (758)
T ss_dssp EECHH---HHCC--------------------------------SCSCEEEEEECTTCCEEEEETT--------------
T ss_pred EeccC---CCCc--------------------------------CCCeEEEEEEcCCCCEEEEeCC--------------
Confidence 65321 1111 2234678889999999987642
Q ss_pred CccEEEEcCCCCeeEEEeccc------cceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC-CCCCce
Q psy4771 226 SGRLIQYNPKTKKNKVLIANL------HFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP-GLPDNV 298 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~------~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~-g~Pdgi 298 (337)
.|++|++.+++........ ...+.|..+.+++.|||+.. +.|.+|+..... ...+.. ++ .....|
T Consensus 166 --Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~--~Gl~~~~~~~~~---~~~~~~-l~~~~i~~i 237 (758)
T 3ott_A 166 --GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE--GYLFQYFPSTGQ---IKQTEA-FHNNSIKSL 237 (758)
T ss_dssp --EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE--EEEEEEETTTTE---EEEEEE-EEEEEEEEE
T ss_pred --CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC--CCCeEEcCCCCe---EEeccC-CCCCeEEEE
Confidence 6888888777654332111 12456777777778999773 478888864321 111111 11 124568
Q ss_pred eECCCCCEEEEecCC
Q psy4771 299 KRDSKGNFLVSLVCP 313 (337)
Q Consensus 299 ~~d~dG~l~va~~~~ 313 (337)
+.|.+|++|++...+
T Consensus 238 ~~d~~g~lWigT~~G 252 (758)
T 3ott_A 238 ALDGNGDLLAGTDNG 252 (758)
T ss_dssp EECTTCCEEEEETTE
T ss_pred EEcCCCCEEEEeCCc
Confidence 899999999998544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0002 Score=64.83 Aligned_cols=174 Identities=9% Similarity=0.071 Sum_probs=107.5
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEec
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLIS 149 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~ 149 (337)
.++.+.+...++.|..|+..+...+..+. ...+....+++.++|+++++-...+ |...|..+++......
T Consensus 153 ~~~~l~s~s~d~~i~~wd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~ 223 (340)
T 1got_B 153 DDNQIVTSSGDTTCALWDIETGQQTTTFT---------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred CCCcEEEEECCCcEEEEECCCCcEEEEEc---------CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence 56677788888888888864333333221 1224467899999998777755444 8888887665433221
Q ss_pred cccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
+ .-...+.+++.++|+.+++-.. +|.|
T Consensus 224 ------~---------------------------------h~~~v~~v~~~p~~~~l~s~s~--------------d~~v 250 (340)
T 1got_B 224 ------G---------------------------------HESDINAICFFPNGNAFATGSD--------------DATC 250 (340)
T ss_dssp ------C---------------------------------CSSCEEEEEECTTSSEEEEEET--------------TSCE
T ss_pred ------C---------------------------------CcCCEEEEEEcCCCCEEEEEcC--------------CCcE
Confidence 1 1224688999999986655433 4577
Q ss_pred EEEcCCCCeeEEEecc---ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCE
Q psy4771 230 IQYNPKTKKNKVLIAN---LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNF 306 (337)
Q Consensus 230 ~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l 306 (337)
..+|..+++....... ......++++|+|+.|..+ ...+.|..++..... ....+.. ..+....+++.++|.+
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~d~~i~vwd~~~~~--~~~~~~~-h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG-YDDFNCNVWDALKAD--RAGVLAG-HDNRVSCLGVTDDGMA 326 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC--EEEEEEC-CSSCEEEEEECTTSSC
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE-CCCCeEEEEEcccCc--EeeEeec-CCCcEEEEEEcCCCCE
Confidence 8888776654332221 1245789999999855554 456789888864321 1223322 2333567888888875
Q ss_pred EEEe
Q psy4771 307 LVSL 310 (337)
Q Consensus 307 ~va~ 310 (337)
.++.
T Consensus 327 l~s~ 330 (340)
T 1got_B 327 VATG 330 (340)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00029 Score=63.48 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=108.7
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
.+++ .++ .+.+...++.|..|+.........+. ........++++++|+++++-...+ |..+|..+++
T Consensus 127 ~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~---------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD---------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE---------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec---------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 3455 343 44577778888777753222221111 1123467899999997666644444 8888988776
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
...... + .-...+.++++++|.+.++-..
T Consensus 198 ~~~~~~------~---------------------------------h~~~v~~l~~spd~~~l~s~s~------------ 226 (321)
T 3ow8_A 198 LLHTLE------G---------------------------------HAMPIRSLTFSPDSQLLVTASD------------ 226 (321)
T ss_dssp EEEEEC------C---------------------------------CSSCCCEEEECTTSCEEEEECT------------
T ss_pred EEEEEc------c---------------------------------cCCceeEEEEcCCCCEEEEEcC------------
Confidence 543322 1 1123688999999986665543
Q ss_pred cCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
+|.|..+|..+++..... ........++++||++.|+.+ ...+.|..+++...+ ....+.. ..+....+++.+
T Consensus 227 --dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~D~~v~iwd~~~~~--~~~~~~~-h~~~v~~v~~s~ 300 (321)
T 3ow8_A 227 --DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGTRT--CVHTFFD-HQDQVWGVKYNG 300 (321)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEECC-CSSCEEEEEECT
T ss_pred --CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCE--EEEEEcC-CCCcEEEEEECC
Confidence 457788887766543333 334456889999999865554 456788888875321 1223322 223356788999
Q ss_pred CCCEEEEec
Q psy4771 303 KGNFLVSLV 311 (337)
Q Consensus 303 dG~l~va~~ 311 (337)
+|...++..
T Consensus 301 ~g~~l~s~~ 309 (321)
T 3ow8_A 301 NGSKIVSVG 309 (321)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 998666553
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00014 Score=66.61 Aligned_cols=186 Identities=11% Similarity=0.057 Sum_probs=114.2
Q ss_pred ccEEEe-eCC--eEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECC-CcEEEE
Q psy4771 65 PEAVVK-HKG--DLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAY-FGLYKV 137 (337)
Q Consensus 65 P~~i~~-~~g--~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~-~gv~~v 137 (337)
-.++++ .++ .+++...++.|..|+.. +....... ........++++.+ +++++++-.. ..|...
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG---------MGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC---------CSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec---------CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 345666 444 56688889999999863 33222211 01234567899999 5555554334 448888
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCc
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSG 217 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~ 217 (337)
|..+.....+... .+ .-.....+++.++|...++-..
T Consensus 147 d~~~~~~~~~~~~----~~---------------------------------~~~~v~~~~~~~~~~~l~~~~~------ 183 (383)
T 3ei3_B 147 DFSGSVIQVFAKT----DS---------------------------------WDYWYCCVDVSVSRQMLATGDS------ 183 (383)
T ss_dssp ETTSCEEEEEECC----CC---------------------------------SSCCEEEEEEETTTTEEEEEET------
T ss_pred ECCCCceEEEecc----CC---------------------------------CCCCeEEEEECCCCCEEEEECC------
Confidence 8887666555431 10 1134678899999885544332
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC-CceeeeecCCCCCCC
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ-GKSEVFIDGLPGLPD 296 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~-~~~~~~~~~~~g~Pd 296 (337)
+|.|..+|........+.........++++++++.++++-...+.|..+++..... +....... ..+...
T Consensus 184 --------d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~ 254 (383)
T 3ei3_B 184 --------TGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVN 254 (383)
T ss_dssp --------TSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEE
T ss_pred --------CCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceE
Confidence 45788888765555555555567789999999984555555678999999864221 22211122 234467
Q ss_pred ceeECC-CCCEEEEec
Q psy4771 297 NVKRDS-KGNFLVSLV 311 (337)
Q Consensus 297 gi~~d~-dG~l~va~~ 311 (337)
.+++++ +|++.++..
T Consensus 255 ~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 255 AAYFNPTDSTKLLTTD 270 (383)
T ss_dssp EEEECTTTSCEEEEEE
T ss_pred EEEEcCCCCCEEEEEc
Confidence 889999 887555443
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00061 Score=65.82 Aligned_cols=207 Identities=15% Similarity=0.122 Sum_probs=118.8
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g 142 (337)
.++++ .++ .+.+...++.|..|+..... +..+. .......++++.++|+.+++-...+ +...|..+.
T Consensus 307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~---------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~ 376 (577)
T 2ymu_A 307 WGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLT---------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 376 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEEC---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEe---------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC
Confidence 45566 344 45577778888777753221 11111 1224467899999997666544445 666776554
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcc---ccc-ceeeeccc------cCCCCCCCCccEEEcCCCcEEEEcCCC
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTE-QLISMDTE------IDGAKPQIPNSVTVDSDGMVYWSDSST 212 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~-~v~~~~~~------~~~~~~~~pn~v~vd~~G~lyvtd~~~ 212 (337)
.+..+.. ..+ ....++++++|+++ ..+ .|...+.. +.+ .-....++++.+|+...++-..
T Consensus 377 ~~~~~~~----~~~----~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~- 446 (577)
T 2ymu_A 377 LLQTLTG----HSS----SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDDQTIASASD- 446 (577)
T ss_dssp EEEEEEC----CSS----CEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEET-
T ss_pred EEEEecC----CCC----CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC-CCCCeEEEEECCCCCEEEEEcC-
Confidence 4444432 111 13568899999987 233 33333211 000 1233567888888875544322
Q ss_pred CccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP 292 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~ 292 (337)
+|.|..+|..+.....+...-.....++++||++.|..+. ..+.|..++.++. ....+.. ..
T Consensus 447 -------------d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~-~d~~i~iw~~~~~---~~~~~~~-h~ 508 (577)
T 2ymu_A 447 -------------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ---LLQTLTG-HS 508 (577)
T ss_dssp -------------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSC---EEEEEEC-CS
T ss_pred -------------CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEcCCCC---EEEEEeC-CC
Confidence 3567777765555555544455678999999998665544 4577888875432 1222222 22
Q ss_pred CCCCceeECCCCCEEEEe
Q psy4771 293 GLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~ 310 (337)
+....+++.++|++.++.
T Consensus 509 ~~v~~l~~s~dg~~l~s~ 526 (577)
T 2ymu_A 509 SSVRGVAFSPDGQTIASA 526 (577)
T ss_dssp SCEEEEEECTTSSCEEEE
T ss_pred CCEEEEEEcCCCCEEEEE
Confidence 335678888888755544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0001 Score=69.31 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=109.0
Q ss_pred EEEe--eCC-eEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEEEEc
Q psy4771 67 AVVK--HKG-DLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYKVNV 139 (337)
Q Consensus 67 ~i~~--~~g-~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~ 139 (337)
+|++ .++ .|.++..+|.|..|+. ++...+..+. ...+...+|+|.| +++++++-+..+ |...|.
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~---------gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI---------GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC---------SSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc---------CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 4666 244 5568999999999975 3322222221 1224467999997 576666655555 778898
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
+++....+... .. .......++++++|.+.++-..
T Consensus 195 ~~~~~~~~~~~----~~---------------------------------~~~~~~~~~~~~~~~~l~~g~~-------- 229 (435)
T 4e54_B 195 KGNILRVFASS----DT---------------------------------INIWFCSLDVSASSRMVVTGDN-------- 229 (435)
T ss_dssp TSCEEEEEECC----SS---------------------------------CSCCCCCEEEETTTTEEEEECS--------
T ss_pred cCCceeEEecc----CC---------------------------------CCccEEEEEECCCCCEEEEEeC--------
Confidence 87766655431 11 1223567889999886655432
Q ss_pred eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCcee
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~ 299 (337)
+|.|..+|..+..+..+...-...+.++++|+++.++++-...+.|..+++.....................++
T Consensus 230 ------dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 303 (435)
T 4e54_B 230 ------VGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303 (435)
T ss_dssp ------SSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECC
T ss_pred ------CCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccccee
Confidence 45788888765554433333445688999999887777776678888888753221111000010111234566
Q ss_pred ECCCCCEEEEe
Q psy4771 300 RDSKGNFLVSL 310 (337)
Q Consensus 300 ~d~dG~l~va~ 310 (337)
++++|++.++.
T Consensus 304 ~spdg~~l~s~ 314 (435)
T 4e54_B 304 FSPDGARLLTT 314 (435)
T ss_dssp BCTTSSEEEEE
T ss_pred ECCCCCeeEEE
Confidence 77777644443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.9e-05 Score=67.56 Aligned_cols=168 Identities=8% Similarity=0.091 Sum_probs=99.0
Q ss_pred EEeeCCeEE-EE---ecCcEEEEEeC-Cc-eeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEEc
Q psy4771 68 VVKHKGDLY-MG---VDGGHILKLSG-GK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVNV 139 (337)
Q Consensus 68 i~~~~g~ly-~d---~~~g~I~~~~~-~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd~ 139 (337)
+++.++.|| ++ ..+.+|++++. |+ .+.+.. .. . ++++++| .||+++.. ..|++++.
T Consensus 111 ~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~-----------~~-~----~~~~~~g~~iy~t~~g~~~Iy~~~l 174 (302)
T 3s25_A 111 ASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN-----------HY-L----FTCNTSDRYFYYNNPKNGQLYRYDT 174 (302)
T ss_dssp EEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES-----------SC-C----CCSEEETTEEEEECTTTCCEEEEET
T ss_pred EEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC-----------CC-c----eEeeEECCEEEEEeCCCceEEEEEC
Confidence 444677887 87 67789999986 32 233321 10 1 2345555 89999863 45999999
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---c-c--cceeeeccccCCC-CCCCCccEEEcCCC-cEEEEcCC
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---Q-T--EQLISMDTEIDGA-KPQIPNSVTVDSDG-MVYWSDSS 211 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~-~--~~v~~~~~~~~~~-~~~~pn~v~vd~~G-~lyvtd~~ 211 (337)
+++..+++.. + +....+.|+|+.+ . . ..|..+..+.... .+..-.-..++++| .||+++..
T Consensus 175 ~g~~~~~l~~------~-----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~~~~~~~g~~Iy~~~~~ 243 (302)
T 3s25_A 175 ASQSEALFYD------C-----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYGSLIFYQRGG 243 (302)
T ss_dssp TTTEEEEEEC------S-----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCEEEEEEETTEEEEEECS
T ss_pred CCCCEEEEeC------C-----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCcceEEECCCEEEEEECC
Confidence 8887776643 1 1223345666665 1 1 1344443221111 12111223467766 48887433
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
. .+.|++++.++...+++..+ +..+++..+++||+++...+.|.++.++|.
T Consensus 244 ~-------------~~~i~~~~~DG~~r~~l~~~----~~~~i~i~~d~Iy~td~~~~~i~~~~~dGs 294 (302)
T 3s25_A 244 D-------------NPALCVVKNDGTGFKELAKG----EFCNINVTSQYVYFTDFVSNKEYCTSTQNP 294 (302)
T ss_dssp S-------------SCEEEEEETTSCCCEEEEES----CEEEEEECSSEEEEEETTTCCEEEEESSSC
T ss_pred C-------------CcEEEEEECCCCccEEeeCC----ccceEEEeCCEEEEEECCCCeEEEEECCCC
Confidence 1 14788888876555555543 123455577799999988888999988775
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=77.01 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=75.2
Q ss_pred ccCccEEEe--eCCeEEEEec----------------------CcEEEEEeCC--c-------eeEEEecCcccc-----
Q psy4771 62 IHGPEAVVK--HKGDLYMGVD----------------------GGHILKLSGG--K-------LVPVVKLGKDCY----- 103 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly~d~~----------------------~g~I~~~~~~--~-------~~~~~~~g~~~~----- 103 (337)
+..||++++ .++.+|+.+. .|+|+||.+. . +..+..-|....
T Consensus 383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~ 462 (592)
T 4a9v_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence 448999999 5889995432 2789999751 1 222222232210
Q ss_pred -----CccccCccCCcceEEECCCCcEEE-EECC------------CcEEEEEcCCCeEEEEeccccccCCCCCCCCCce
Q psy4771 104 -----GFKYEQQCGRPLGIKFDKNGALHV-ADAY------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSV 165 (337)
Q Consensus 104 -----~~~~~~~~~~P~Gl~~d~~G~lyV-ad~~------------~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v 165 (337)
+......+..|.+|+||++|+||| +|.. ++++++++++|+++.++.. .
T Consensus 463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~---P----------- 528 (592)
T 4a9v_A 463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG---P----------- 528 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC---C-----------
T ss_pred ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC---C-----------
Confidence 001124578999999999999999 6642 1589999988998888741 0
Q ss_pred eeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcC
Q psy4771 166 TVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS 210 (337)
Q Consensus 166 ~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~ 210 (337)
....|||+++++|++ |||+-.
T Consensus 529 ------------------------~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 529 ------------------------IGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp ------------------------TTCEEEEEEECTTSSEEEEEEE
T ss_pred ------------------------CCccccCCEECCCCCEEEEEEe
Confidence 234589999999986 777654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=76.24 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=94.8
Q ss_pred cCCcceEEECCCC--cEEEEECCCcEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 111 CGRPLGIKFDKNG--ALHVADAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 111 ~~~P~Gl~~d~~G--~lyVad~~~gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+..|.+|++.++| +|||++....|++++.++... ..+... |.-++- ...
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~-----------~~~~~~-----------------g~~ 64 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDI-----------HKLVQS-----------------GIK 64 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEEC-----------TTTBCC-----------------CCS
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCC-----------cceecc-----------------Ccc
Confidence 5679999999998 499998654588887654321 111110 000000 000
Q ss_pred CCCCCCCccEEEcCC----CcEEEEcCCCCc--cCceeeeeecCCccEEEEcCCCC--------eeEEEec-----cccc
Q psy4771 188 GAKPQIPNSVTVDSD----GMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTK--------KNKVLIA-----NLHF 248 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~----G~lyvtd~~~~~--~~~~~~~~~~~~G~v~~~d~~~~--------~~~~~~~-----~~~~ 248 (337)
......+.+|+++|+ |.||++.+...- .+.. .....+|.|+....+ +.+++.+ ..++
T Consensus 65 ~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~----~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~ 140 (463)
T 2wg3_C 65 GGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGP----HDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL 140 (463)
T ss_dssp SSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSS----SCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC
T ss_pred ccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCC----cccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc
Confidence 001244678999985 889987542110 0000 000125555443211 1222222 2356
Q ss_pred eeeEEEccCCCEEEEEeCC-----------------CCEEEEEEeeCCC------C-----------CceeeeecCCCCC
Q psy4771 249 ANGVELSADESFVIVAETM-----------------SSRVHRYYLKGPK------Q-----------GKSEVFIDGLPGL 294 (337)
Q Consensus 249 p~gia~~~dg~~lyva~~~-----------------~~~I~~~~~~g~~------~-----------~~~~~~~~~~~g~ 294 (337)
...|+|+||| +|||+-.. .+.|+|++++|.. . ...++++-++-.
T Consensus 141 g~~l~fgpDG-~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN- 218 (463)
T 2wg3_C 141 GGQLLFGPDG-FLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD- 218 (463)
T ss_dssp EEEEEECTTS-CEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-
T ss_pred CCcEeECCCC-cEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-
Confidence 6789999999 59998533 3579999998731 0 124677766555
Q ss_pred CCceeECCC-----CC--EEEEec
Q psy4771 295 PDNVKRDSK-----GN--FLVSLV 311 (337)
Q Consensus 295 Pdgi~~d~d-----G~--l~va~~ 311 (337)
|.||++|++ |. +|++..
T Consensus 219 p~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 219 PGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp CCBEEEESSCSSTTCSEEEEEECC
T ss_pred cceEEECCCCCCcccceEEEeccc
Confidence 999999997 64 555664
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0003 Score=63.59 Aligned_cols=215 Identities=10% Similarity=-0.006 Sum_probs=120.8
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVT 140 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~ 140 (337)
.++++ .++ .+++...++.|..|+. ++...+..+. .......++++.++|+++++-... .|..+|.+
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK---------EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE---------CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec---------CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 34555 344 4557778898888875 3322332221 122456799999999666554444 47777877
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeecccc----------CCCCCCCCccEEEcCCCcEE
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEI----------DGAKPQIPNSVTVDSDGMVY 206 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~----------~~~~~~~pn~v~vd~~G~ly 206 (337)
+++........ ...+ ....++++++|+++ .++.|...+... ..........+++.++|+.+
T Consensus 83 ~~~~~~~~~~~-~~~~----~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 83 GRTWKPTLVIL-RINR----AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp TTEEEEEEECC-CCSS----CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred CCeeeeeEEee-cCCC----ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 77644332210 1111 24557888888877 223333322111 01113446788888888755
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcC------------------CCCeeEE-EeccccceeeEEEccCCCEEEEEeCC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNP------------------KTKKNKV-LIANLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~------------------~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~ 267 (337)
++... +|.|..+|. ..++... +...-.....++++++++.|+++. .
T Consensus 158 ~~~~~--------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 222 (372)
T 1k8k_C 158 AAGSC--------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-H 222 (372)
T ss_dssp EEEET--------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-T
T ss_pred EEEcC--------------CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-C
Confidence 44332 346666663 2333322 223344578999999998666665 4
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
.+.|..+++...+ ....+.. .......++++++|.+.++...
T Consensus 223 d~~i~i~d~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~d 264 (372)
T 1k8k_C 223 DSTVCLADADKKM--AVATLAS-ETLPLLAVTFITESSLVAAGHD 264 (372)
T ss_dssp TTEEEEEEGGGTT--EEEEEEC-SSCCEEEEEEEETTEEEEEETT
T ss_pred CCEEEEEECCCCc--eeEEEcc-CCCCeEEEEEecCCCEEEEEeC
Confidence 6789999986432 1222222 2223567888888876665533
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00021 Score=69.08 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=105.7
Q ss_pred ccEEEe-eCCe-EEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 65 PEAVVK-HKGD-LYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 65 P~~i~~-~~g~-ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
..++++ .++. |.+...++.|..|+. ++. +..+. .......++++.++++.+++-...+ |...|..
T Consensus 388 v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~--~~~~~---------~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~ 456 (577)
T 2ymu_A 388 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLT---------GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTTCCE--EEEEE---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCE--EEEec---------CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 345666 4444 447777887777775 222 11111 1223467899999996665544444 7777766
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceee
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~ 220 (337)
+..+..+.. .-...+.++++++|++.++-..
T Consensus 457 ~~~~~~~~~----------------------------------------~~~~v~~~~~spd~~~las~~~--------- 487 (577)
T 2ymu_A 457 GQLLQTLTG----------------------------------------HSSSVRGVAFSPDGQTIASASD--------- 487 (577)
T ss_dssp SCEEEEEEC----------------------------------------CSSCEEEEEECTTSCEEEEEET---------
T ss_pred CCEEEEEcC----------------------------------------CCCCEEEEEEcCCCCEEEEEeC---------
Confidence 544444432 1123578999999986655432
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
+|.|..+|..+.....+...-...+.++++|||+.|..+. ..+.|..++.++. ....+.. ..+...++++
T Consensus 488 -----d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~dg~v~lwd~~~~---~~~~~~~-h~~~v~~~~f 557 (577)
T 2ymu_A 488 -----DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ---LLQTLTG-HSSSVWGVAF 557 (577)
T ss_dssp -----TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTSC---EEEEEEC-CSSCEEEEEE
T ss_pred -----CCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE-CcCEEEEEeCCCC---EEEEEcC-CCCCEEEEEE
Confidence 3467777765444444444455678999999998666554 4567888875432 1223322 2334578899
Q ss_pred CCCCCEEEEe
Q psy4771 301 DSKGNFLVSL 310 (337)
Q Consensus 301 d~dG~l~va~ 310 (337)
.+||++.++.
T Consensus 558 s~dg~~l~s~ 567 (577)
T 2ymu_A 558 SPDGQTIASA 567 (577)
T ss_dssp CTTSSCEEEE
T ss_pred cCCCCEEEEE
Confidence 9999866654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0015 Score=59.85 Aligned_cols=181 Identities=12% Similarity=0.119 Sum_probs=103.4
Q ss_pred CCcceEEECCCCc-EEEEECC-Cc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cccceeeeccc
Q psy4771 112 GRPLGIKFDKNGA-LHVADAY-FG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTEQLISMDTE 185 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~~-~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~~v~~~~~~ 185 (337)
.....++|.|||+ |.++... .+ |...|.++++...... ..+. -..+++++||+++ +.+.+..+...
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~----~~~~----V~~v~fspdg~~l~s~s~~~~~~~~~~ 205 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE----TRGE----VKDLHFSTDGKVVAYITGSSLEVISTV 205 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE----CSSC----CCEEEECTTSSEEEEECSSCEEEEETT
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC----CCCc----eEEEEEccCCceEEeccceeEEEEEec
Confidence 3467899999995 5566433 34 7778998887654442 1221 3568999999988 44455444321
Q ss_pred cCC--------CCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-----EEeccccceeeE
Q psy4771 186 IDG--------AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-----VLIANLHFANGV 252 (337)
Q Consensus 186 ~~~--------~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-----~~~~~~~~p~gi 252 (337)
-.. ..-...+.+++.++|...++-.... .....++.++...+... .+.......+.+
T Consensus 206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 275 (365)
T 4h5i_A 206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK----------GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM 275 (365)
T ss_dssp TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS----------SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE
T ss_pred cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC----------cceeEEeecccccceecceeeeeecCCCCCeEeE
Confidence 111 0112356788888887555433211 00113444444333321 122334456789
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 253 ELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 253 a~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+++|||+.|..+. ..+.|..+++...+ ....+..+-.+....+++.+||++.++....
T Consensus 276 ~~Spdg~~lasgs-~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 276 DVDMKGELAVLAS-NDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp EECTTSCEEEEEE-TTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred EECCCCCceEEEc-CCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence 9999998665554 45788888875321 1222222223345789999999977765443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00027 Score=64.91 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=108.9
Q ss_pred cEEEe-eCCe-EEEE--ecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCC
Q psy4771 66 EAVVK-HKGD-LYMG--VDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g~-ly~d--~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~ 141 (337)
..+++ .+|. +.+. ..++.|..|+..+...+..+. ..+...+++|.|+|+++++-...++.+++..+
T Consensus 137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~----------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~ 206 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE----------TRGEVKDLHFSTDGKVVAYITGSSLEVISTVT 206 (365)
T ss_dssp EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE----------CSSCCCEEEECTTSSEEEEECSSCEEEEETTT
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC----------CCCceEEEEEccCCceEEeccceeEEEEEecc
Confidence 35666 4554 4433 356778788874443333331 12346799999999887776667788888776
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cc-c----ceeeecc-----------ccCCCCCCCCccEEEcCC
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QT-E----QLISMDT-----------EIDGAKPQIPNSVTVDSD 202 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~-~----~v~~~~~-----------~~~~~~~~~pn~v~vd~~ 202 (337)
++....... .+. ...-..++++++|+.+ .. + .+...+. .+.+ .....+.++++||
T Consensus 207 ~~~~~~~~~----~~~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spd 280 (365)
T 4h5i_A 207 GSCIARKTD----FDK-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMK 280 (365)
T ss_dssp CCEEEEECC----CCT-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTT
T ss_pred Ccceeeeec----CCC-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCC
Confidence 654332211 110 0012457788888876 11 1 1111110 0111 1234678899999
Q ss_pred CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE-Eecc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 203 GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV-LIAN-LHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 203 G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
|++.++-.. +|.|..+|..+++... +..+ -...++++|+|||+ ++++-+..+.|.++++..
T Consensus 281 g~~lasgs~--------------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 281 GELAVLASN--------------DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEEET--------------TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred CCceEEEcC--------------CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence 986654432 4588888988887543 3333 44568999999997 555666678999999853
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-05 Score=77.44 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=64.2
Q ss_pred cceEEECCCCc-EEEEECCCcEEEEEcCCC---eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNGA-LHVADAYFGLYKVNVTTG---QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g---~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
...+++++||+ |+++. ...|+.+|.+++ +...+..
T Consensus 111 v~~~~~SpDg~~l~~~~-~~~i~~~d~~~~~~~~~~~l~~---------------------------------------- 149 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPL-GGELYLYDLKQEGKAAVRQLTH---------------------------------------- 149 (741)
T ss_dssp SCCCEECTTSSEEEEEE-TTEEEEEESSSCSTTSCCBCCC----------------------------------------
T ss_pred cceeEECCCCCEEEEEe-CCcEEEEECCCCCcceEEEccc----------------------------------------
Confidence 46899999995 55554 355888888776 4433321
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc-----------------ceee
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH-----------------FANG 251 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~-----------------~p~g 251 (337)
.......++++|||+ |+++.. +.|+.+|.++++...+..... .+.+
T Consensus 150 ~~~~~~~~~~SPDG~~la~~~~----------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~ 213 (741)
T 2ecf_A 150 GEGFATDAKLSPKGGFVSFIRG----------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTG 213 (741)
T ss_dssp SSSCEEEEEECTTSSEEEEEET----------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCS
T ss_pred CCcccccccCCCCCCEEEEEeC----------------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccc
Confidence 112367889999997 555432 268888887776655433221 1578
Q ss_pred EEEccCCCEEEEEeC
Q psy4771 252 VELSADESFVIVAET 266 (337)
Q Consensus 252 ia~~~dg~~lyva~~ 266 (337)
++++|||++|+++..
T Consensus 214 ~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 214 YWWAPDDSAIAYARI 228 (741)
T ss_dssp EEECTTSSCEEEEEE
T ss_pred eEECCCCCEEEEEEE
Confidence 999999998888754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00019 Score=67.73 Aligned_cols=219 Identities=13% Similarity=0.067 Sum_probs=121.0
Q ss_pred ccEEEe-eCC-eEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCcEEEEE
Q psy4771 65 PEAVVK-HKG-DLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFGLYKVN 138 (337)
Q Consensus 65 P~~i~~-~~g-~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~gv~~vd 138 (337)
..++++ .++ .|+ +...++.|..|+.. ....+..+... .....+.+++++++|+ |++++....++.++
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-------CFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-------ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 356666 344 554 77788888777643 22212111100 1124578999999995 55555434488888
Q ss_pred cCCCeEEE-EeccccccCCCCCCCCCceeeCCC---CCcc----cccceeeecccc-------CCCCCCCCccEEEcCCC
Q psy4771 139 VTTGQTEQ-LISMDTEIDGAKPQIPNSVTVDSD---GQTG----QTEQLISMDTEI-------DGAKPQIPNSVTVDSDG 203 (337)
Q Consensus 139 ~~~g~~~~-l~~~~~~~~g~~~~~P~~v~~~~~---g~~~----~~~~v~~~~~~~-------~~~~~~~pn~v~vd~~G 203 (337)
..+++... .........+ ....++++++ |+++ .++.|...+... ....-...+.+++. +|
T Consensus 178 ~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~ 252 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVS----MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD 252 (450)
T ss_dssp TTSCCCSSCCCCCSEECSS----CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST
T ss_pred cCCcccccccceeeecccC----ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC
Confidence 76554321 0000000111 1345777887 7666 223333333110 00112345778888 77
Q ss_pred cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc--------------------------ccceeeEEEccC
Q psy4771 204 MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--------------------------LHFANGVELSAD 257 (337)
Q Consensus 204 ~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--------------------------~~~p~gia~~~d 257 (337)
.++++-. .+|.|..+|..+++....... -....+++++++
T Consensus 253 ~~l~s~~--------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 253 YLLLSAG--------------GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp TEEEEEE--------------SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CEEEEEe--------------CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 7554443 245788888777764332221 123468999999
Q ss_pred CCEEEEEeCCCCEEEEEEe--eCC-CCCceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 258 ESFVIVAETMSSRVHRYYL--KGP-KQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 258 g~~lyva~~~~~~I~~~~~--~g~-~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
++.|+++....+.|..+++ ... .......+.. ++.+..++++++ .+|++...
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~~~v~~~~~~~~-~~~v~~~~ 373 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--PYNVISLSAHND-EFQVTLDN 373 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--SSCEEEEEEETT-EEEEEECC
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--CCceEEEEecCC-cEEEEEec
Confidence 9999999877889999998 221 1122222222 255788899884 57777654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00033 Score=64.14 Aligned_cols=214 Identities=13% Similarity=0.025 Sum_probs=116.8
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeCCceeEE--EecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSGGKLVPV--VKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
.++++ .++.+.+...+|.|..|+..+.... ..+.. .........+++.++|+.+++-...+ |...|..+
T Consensus 98 ~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~-------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 98 TDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAK-------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp EEEEEETTTEEEEEETTSCEEEC--------CCCCEEE-------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeecc-------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 35566 5677777778888877764221111 00000 01123467899999997666544444 88889888
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCc-c----cccceeeeccccCC--------CCCCCCccEEEcCCC-cEEE
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQT-G----QTEQLISMDTEIDG--------AKPQIPNSVTVDSDG-MVYW 207 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~-~----~~~~v~~~~~~~~~--------~~~~~pn~v~vd~~G-~lyv 207 (337)
++....... ..+ .-..+++.++++. + .++.|...+..... ..-..+..+++.|++ .+++
T Consensus 171 ~~~~~~~~~---h~~----~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 171 KAVLKSYNA---HSS----EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp TEEEEEECC---CSS----CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred CcEEEEEcC---CCC----CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 775544321 111 1234677777653 2 22334333311100 011235677888764 4443
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceee
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~ 286 (337)
+-. .+|.|..+|..+++......+ -..-+.++++|+++.++++-...+.|..++++.. +...
T Consensus 244 ~g~--------------~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~ 306 (357)
T 4g56_B 244 CGD--------------ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFR 306 (357)
T ss_dssp EEE--------------SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEE
T ss_pred Eee--------------cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeE
Confidence 322 245788888777654433333 3445889999998766666656678888886532 1111
Q ss_pred eecCCCCCCCceeECC-CCCEEEEec
Q psy4771 287 FIDGLPGLPDNVKRDS-KGNFLVSLV 311 (337)
Q Consensus 287 ~~~~~~g~Pdgi~~d~-dG~l~va~~ 311 (337)
... ..+....+++.+ +|.+.++..
T Consensus 307 ~~~-H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 307 DLS-HRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp ECC-CSSCEEEEEECSSSTTEEEEEE
T ss_pred ECC-CCCCEEEEEEeCCCCCEEEEEc
Confidence 111 223456788886 677665543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.7e-05 Score=68.11 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=94.3
Q ss_pred ccEEEeeCCeEE-EEecC-------------cEEEEEeCC-ce-eEEEecCccccCccccCccCCcceEEECCCC-cEEE
Q psy4771 65 PEAVVKHKGDLY-MGVDG-------------GHILKLSGG-KL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHV 127 (337)
Q Consensus 65 P~~i~~~~g~ly-~d~~~-------------g~I~~~~~~-~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyV 127 (337)
+..+.+.++.|| ++..+ +.|++++.. .. +.+. . -.+..+.++| .||+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~---------------~-~~~~~~s~~g~~Iy~ 120 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD---------------P-DPCIYASLIGNYIYY 120 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE---------------C-SCEEEEEEETTEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee---------------c-CCccEEEEeCCEEEE
Confidence 445556677777 76653 578898863 22 2221 0 1123444454 8999
Q ss_pred EE---CCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---c--ccceeeeccccCCC--CCCCCcc
Q psy4771 128 AD---AYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---Q--TEQLISMDTEIDGA--KPQIPNS 196 (337)
Q Consensus 128 ad---~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~--~~~v~~~~~~~~~~--~~~~pn~ 196 (337)
++ ... .|++++.++...+++.... . .+++.+|+.+ . ...|..+......+ -...+..
T Consensus 121 ~~~~~~~~~~Iy~~~~dGs~~~~lt~~~----~--------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~ 188 (302)
T 3s25_A 121 LHYDTQTATSLYRIRIDGEEKKKIKNHY----L--------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY 188 (302)
T ss_dssp EEESSSSCEEEEEEETTSCCCEEEESSC----C--------CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE
T ss_pred EeecCCCCceEEEEECCCCCeEEEeCCC----c--------eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc
Confidence 98 333 4999999877777776420 0 1234444444 1 12333332110000 0112233
Q ss_pred EEEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEE-eCCCCEEEEE
Q psy4771 197 VTVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVA-ETMSSRVHRY 274 (337)
Q Consensus 197 v~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva-~~~~~~I~~~ 274 (337)
..+.|+| .||+++.... ..|++.+.+++..+++.. -.-..++++++.||++ +.....|.++
T Consensus 189 ~~~~P~g~~iy~t~~~~~-------------~~I~~~~ldG~~~~~Lt~----~~~~~~~~~g~~Iy~~~~~~~~~i~~~ 251 (302)
T 3s25_A 189 KPVVLDDTNVYYMDVNRD-------------NAIVHVNINNPNPVVLTE----ANIEHYNVYGSLIFYQRGGDNPALCVV 251 (302)
T ss_dssp EEEEEETTEEEEEEGGGT-------------TEEEEECSSSCCCEECSC----SCEEEEEEETTEEEEEECSSSCEEEEE
T ss_pred ceeeecCCEEEEEEcCCC-------------cEEEEEECCCCCeEEEeC----CCcceEEECCCEEEEEECCCCcEEEEE
Confidence 4566544 4777776421 378888887766555432 2335678888888876 5566778888
Q ss_pred EeeCC
Q psy4771 275 YLKGP 279 (337)
Q Consensus 275 ~~~g~ 279 (337)
+++|.
T Consensus 252 ~~DG~ 256 (302)
T 3s25_A 252 KNDGT 256 (302)
T ss_dssp ETTSC
T ss_pred ECCCC
Confidence 87765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00029 Score=64.36 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=106.3
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC-cEEEEEcCCC
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF-GLYKVNVTTG 142 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~-gv~~vd~~~g 142 (337)
++++ .++ .|.+...++.|..|+..+.+.+..+. ........+++.+++ .++++-... .|...|..++
T Consensus 132 ~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~---------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 132 TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR---------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202 (344)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---------CcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence 4455 344 44477777777777753333332221 122446789999988 676664444 4888888776
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCC-Ccc---cc-cceeeeccccCCC-------CCCCCccEEEcCCCc-EEEEc
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDG-QTG---QT-EQLISMDTEIDGA-------KPQIPNSVTVDSDGM-VYWSD 209 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g-~~~---~~-~~v~~~~~~~~~~-------~~~~pn~v~vd~~G~-lyvtd 209 (337)
+....... ...+. ....+++.+++ +++ .. +.|...+.+ .+. .-...+.+++.++|. +.++-
T Consensus 203 ~~~~~~~~--~~~~~---~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~-~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 203 KPASQIGC--SAPGY---LPTSLAWHPQQSEVFVFGDENGTVSLVDTK-STSCVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp SCEEECC------CC---CEEEEEECSSCTTEEEEEETTSEEEEEESC-C--CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred ceeeeeec--ceeec---cceeeeecCCCCcceEEeccCCcEEEEECC-CCcEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 54333211 11111 23456677644 443 22 333333311 111 123457788888774 43333
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+ .+|.|..+|..+++...+...-...++++++|+++.|+++-...++|..+++..
T Consensus 277 s--------------~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 277 S--------------EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp E--------------TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred e--------------CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 2 246888889888877655555556789999999988887776778888888653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0001 Score=73.50 Aligned_cols=138 Identities=13% Similarity=0.065 Sum_probs=87.0
Q ss_pred CcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 113 RPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
.+..+++++++.++++. ...++.+|.++++...+... ..
T Consensus 83 ~v~~~~~spd~~~~~~~-~~~i~~~d~~~~~~~~l~~~----------------------------------------~~ 121 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFT-QGGLVGFDMLARKVTYLFDT----------------------------------------NE 121 (706)
T ss_dssp CCEEEEETTTTEEEEEE-TTEEEEEETTTTEEEEEECC----------------------------------------TT
T ss_pred CceeEEECCCCeEEEEE-CCEEEEEECCCCceEEccCC----------------------------------------cc
Confidence 47789999997666664 35699999988877666431 12
Q ss_pred CCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCC-----CeeEEEecccc---------------ceee
Q psy4771 193 IPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT-----KKNKVLIANLH---------------FANG 251 (337)
Q Consensus 193 ~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~-----~~~~~~~~~~~---------------~p~g 251 (337)
...+++++|||+ |.++.. +.|+.+|..+ ++...+..... .+.+
T Consensus 122 ~~~~~~~SpdG~~la~~~~----------------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~ 185 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRN----------------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKG 185 (706)
T ss_dssp CCTTCEECTTSSEEEEEET----------------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCS
T ss_pred cccCCcCCCCCCEEEEEEC----------------CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCce
Confidence 356788999986 444321 3677777766 65544332221 2589
Q ss_pred EEEccCCCEEEEEeC--------------------------------CCCEEEEEEeeCCCCCceeeeec--CCCCCCCc
Q psy4771 252 VELSADESFVIVAET--------------------------------MSSRVHRYYLKGPKQGKSEVFID--GLPGLPDN 297 (337)
Q Consensus 252 ia~~~dg~~lyva~~--------------------------------~~~~I~~~~~~g~~~~~~~~~~~--~~~g~Pdg 297 (337)
++++|||++|+++.. ...+|+++++++++ ...... .....+..
T Consensus 186 ~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK---TVYLQTGEPKEKFLTN 262 (706)
T ss_dssp EEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE---EEECCCCSCTTCEEEE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc---eEeeccCCCCceeEee
Confidence 999999999988752 23567778775432 111111 11123456
Q ss_pred eeECCCCC-EEEEe
Q psy4771 298 VKRDSKGN-FLVSL 310 (337)
Q Consensus 298 i~~d~dG~-l~va~ 310 (337)
+++.+||+ ++++.
T Consensus 263 ~~~spdg~~l~~~~ 276 (706)
T 2z3z_A 263 LSWSPDENILYVAE 276 (706)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEEECCCCEEEEEE
Confidence 88899997 55544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0014 Score=58.62 Aligned_cols=210 Identities=10% Similarity=0.085 Sum_probs=117.0
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g 142 (337)
.++++ .++ .+.+...++.|..|+..+.+.+..+. ........+++++++.++++-...+ |...|.++.
T Consensus 69 ~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~ 139 (319)
T 3frx_A 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139 (319)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc---------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 34555 344 56688899999999864333332221 1224467899999997766654444 777888766
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCC------CCcc----cccceeeecc-------ccCCCCCCCCccEEEcCCCcE
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSD------GQTG----QTEQLISMDT-------EIDGAKPQIPNSVTVDSDGMV 205 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~------g~~~----~~~~v~~~~~-------~~~~~~~~~pn~v~vd~~G~l 205 (337)
.+..+... .+. -..+.+.+. +..+ .++.|...+. .+.+ .-...+.++++++|++
T Consensus 140 ~~~~~~~h----~~~----v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 140 CLATLLGH----NDW----VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTL 210 (319)
T ss_dssp EEEEECCC----SSC----EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSE
T ss_pred eEEEEecc----CCc----EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCE
Confidence 55544321 100 112233332 2222 1122222211 1111 1234678888898876
Q ss_pred EEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCcee
Q psy4771 206 YWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSE 285 (337)
Q Consensus 206 yvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~ 285 (337)
.++-. .+|.|..+|..+++.............++++||+..|..+.. ..|..++++.... ..
T Consensus 211 l~s~~--------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~--~~i~v~~~~~~~~--~~ 272 (319)
T 3frx_A 211 IASAG--------------KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA--TGIKVFSLDPQYL--VD 272 (319)
T ss_dssp EEEEE--------------TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET--TEEEEEEETTEEE--EE
T ss_pred EEEEe--------------CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC--CCcEEEEeCcCee--ee
Confidence 55443 246888888887765444444456788999999988777764 4677777653211 01
Q ss_pred eeecCC-------CCCCCceeECCCCCEEEEec
Q psy4771 286 VFIDGL-------PGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 286 ~~~~~~-------~g~Pdgi~~d~dG~l~va~~ 311 (337)
.+.... ......+++.+||++.++..
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred ccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 111111 11234688999998665543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0015 Score=57.93 Aligned_cols=182 Identities=13% Similarity=0.062 Sum_probs=107.8
Q ss_pred ccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 65 PEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
-.++++ .++ .+.+...++.|..|+.........+. ........++++++|+++++-...+ |...|.++
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---------GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc---------cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 345556 344 45588889988888863222222221 1223467899999997666654444 77788876
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
++...... + .-.....+++.++|++.++-..
T Consensus 97 ~~~~~~~~------~---------------------------------~~~~v~~~~~~~~~~~l~s~~~---------- 127 (312)
T 4ery_A 97 GKCLKTLK------G---------------------------------HSNYVFCCNFNPQSNLIVSGSF---------- 127 (312)
T ss_dssp CCEEEEEE------C---------------------------------CSSCEEEEEECSSSSEEEEEET----------
T ss_pred CcEEEEEc------C---------------------------------CCCCEEEEEEcCCCCEEEEEeC----------
Confidence 65433322 1 1123567888888876554432
Q ss_pred eecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 222 LTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
+|.|..+|..+++...... .-.....++++++++.++.+. ..+.|..+++...+ ....+..........+++
T Consensus 128 ----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~ 200 (312)
T 4ery_A 128 ----DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKF 200 (312)
T ss_dssp ----TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCC--EEEEECCSSCCCEEEEEE
T ss_pred ----CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc--eeeEEeccCCCceEEEEE
Confidence 4578888887765433332 334457899999998666554 45788888875321 112222211122345788
Q ss_pred CCCCCEEEEec
Q psy4771 301 DSKGNFLVSLV 311 (337)
Q Consensus 301 d~dG~l~va~~ 311 (337)
+++|++.++..
T Consensus 201 ~~~~~~l~~~~ 211 (312)
T 4ery_A 201 SPNGKYILAAT 211 (312)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEc
Confidence 88887555443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00051 Score=62.67 Aligned_cols=177 Identities=11% Similarity=0.011 Sum_probs=105.5
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
.++++ .++.+.+...+|.|..|+. ++......+.. ....+....+++.++|+.+++-...+ |...|.++
T Consensus 86 ~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~-------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 86 ADLTWVGERGILVASDSGAVELWELDENETLIVSKFCK-------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccc-------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 34566 5677778889998888874 33221111100 01224467899999997666644444 88889887
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~ 220 (337)
++...... | --...+.+++.+++. ++++-..
T Consensus 159 ~~~~~~~~------~---------------------------------h~~~V~~~~~~~~~~~~l~s~s~--------- 190 (344)
T 4gqb_B 159 QVVLSSYR------A---------------------------------HAAQVTCVAASPHKDSVFLSCSE--------- 190 (344)
T ss_dssp TEEEEEEC------C---------------------------------CSSCEEEEEECSSCTTEEEEEET---------
T ss_pred CcEEEEEc------C---------------------------------cCCceEEEEecCCCCCceeeecc---------
Confidence 76544332 1 012357888888774 6655432
Q ss_pred eeecCCccEEEEcCCCCeeEEEec---cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCc
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIA---NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdg 297 (337)
+|.|..+|..+++...... .......+++++++..++++-...+.|..+++...+. ...+.. .......
T Consensus 191 -----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~~-h~~~v~~ 262 (344)
T 4gqb_B 191 -----DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSAV-HSQCVTG 262 (344)
T ss_dssp -----TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C--CEEEEC-CSSCEEE
T ss_pred -----ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE--EEEEcC-CCCCEEE
Confidence 4578888887776433221 2234678999987766777766778999998864322 122222 1222355
Q ss_pred eeECCCCC
Q psy4771 298 VKRDSKGN 305 (337)
Q Consensus 298 i~~d~dG~ 305 (337)
+++.++|.
T Consensus 263 v~fsp~g~ 270 (344)
T 4gqb_B 263 LVFSPHSV 270 (344)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 66776663
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.002 Score=59.03 Aligned_cols=218 Identities=12% Similarity=0.077 Sum_probs=120.6
Q ss_pred ccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcE-EEEECCCcEEEEEcCC
Q psy4771 65 PEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGAL-HVADAYFGLYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~l-yVad~~~gv~~vd~~~ 141 (337)
-.++++ .++ .|++...+|.|..|+... ..+..+. .......++++.++|+. +++.....|..+|..+
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWNKTG-ALLNVLN---------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC---------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Ceeeecc---------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence 345556 344 556888899999998522 1122221 12245779999999954 4554434588889887
Q ss_pred CeEEEEeccccccCCC--------CCCCCCceeeCCCCCcc---cccceeeeccccCC------CCCCCCccEEEcCCCc
Q psy4771 142 GQTEQLISMDTEIDGA--------KPQIPNSVTVDSDGQTG---QTEQLISMDTEIDG------AKPQIPNSVTVDSDGM 204 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~--------~~~~P~~v~~~~~g~~~---~~~~v~~~~~~~~~------~~~~~pn~v~vd~~G~ 204 (337)
++.............. .......+++.+++.++ ..+.|...+..... ........++++++|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 7655443311100000 00013456666666665 33344444321110 0123356788888876
Q ss_pred EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 205 VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 205 lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
.+++.. .+|.|..+|..+++...... .-.....+++++++ ++++....+.|..+++.... .
T Consensus 261 ~l~~~~--------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~--~ 322 (425)
T 1r5m_A 261 LLLSAS--------------DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT--L 322 (425)
T ss_dssp EEEEEE--------------TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE--E
T ss_pred EEEEEc--------------CCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--E
Confidence 444432 24578888877665433332 34456889999998 44445557899999875321 1
Q ss_pred eeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 284 SEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 284 ~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
...+.. .......++++++|++.++..
T Consensus 323 ~~~~~~-~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 323 LALSIV-DGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp EEEEEC-TTCCEEEEEECTTSSEEEEEE
T ss_pred eEeccc-CCccEEEEEEcCCCCEEEEEE
Confidence 122221 223467888999988555443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0043 Score=57.07 Aligned_cols=221 Identities=13% Similarity=0.054 Sum_probs=119.9
Q ss_pred ccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 65 PEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
..++++ .++ .|++...++.|..|+..+...+..+. .......++++.++|+.+++-...+ |..+|..+
T Consensus 142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE---------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc---------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 455666 344 56688889999999863322222221 1224567899999996655544444 88889887
Q ss_pred CeEEEEeccccccCCC-----------------CCCCCCceeeCCCCCcc----cccceeeecccc-------CCCCCCC
Q psy4771 142 GQTEQLISMDTEIDGA-----------------KPQIPNSVTVDSDGQTG----QTEQLISMDTEI-------DGAKPQI 193 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~-----------------~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~-------~~~~~~~ 193 (337)
++.............. .......++++++|+++ .++.|...+... .......
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 7655443211000000 00012346667777776 223344333111 1111234
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCe--eEEEeccc-cceeeEEEccCCCEEEEEeCCCC
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK--NKVLIANL-HFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~--~~~~~~~~-~~p~gia~~~dg~~lyva~~~~~ 269 (337)
...++++++|. +.++-. .+|.|..+|..+++ ...+.... ...+.++ .++++ ++++-...+
T Consensus 293 v~~~~~~~~~~~~l~~g~--------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~l~s~~~d~ 356 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGY--------------ENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGA-LFVSSGFDT 356 (420)
T ss_dssp EEEEEECSSCTTEEEEEE--------------TTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTE-EEEEETTTE
T ss_pred ceeEEEeCCCCCEEEEEe--------------CCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCC-EEEEecCCc
Confidence 66788888876 544433 24688888887653 23333322 2334554 45664 666666778
Q ss_pred EEEEEEeeCCCC-------CceeeeecCCCCCCCceeECCCCC----EEEEec
Q psy4771 270 RVHRYYLKGPKQ-------GKSEVFIDGLPGLPDNVKRDSKGN----FLVSLV 311 (337)
Q Consensus 270 ~I~~~~~~g~~~-------~~~~~~~~~~~g~Pdgi~~d~dG~----l~va~~ 311 (337)
+|..+++..... .....+.. ..+....+++.++|. ++++..
T Consensus 357 ~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 357 SIKLDIISDPESERPAIEFETPTFLVS-NDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEEEEEECCTTCCSCEECTTSCEEECC-SSCCCCEEEEECCSSSSCEEEEEET
T ss_pred cEEEEeccCCCCCccceeccCccEEcc-CCcceEEEEEccCCCCcceEEEEcC
Confidence 899998865211 11112221 233467788888887 555543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0026 Score=57.28 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=111.9
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC--CcEEEEECCCc-EEEEE
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN--GALHVADAYFG-LYKVN 138 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~--G~lyVad~~~g-v~~vd 138 (337)
.++++ .++ .|.+...+|.|..|+. +....+..+. ........+++.++ ++++++-...+ |...|
T Consensus 15 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 15 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---------GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---------CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec---------CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 45555 344 4557778888888865 2433333331 12244678999866 76555544444 77778
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCC--CCcc----cccceeeeccccCC--------CCCCCCccEEEcC---
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD--GQTG----QTEQLISMDTEIDG--------AKPQIPNSVTVDS--- 201 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~--g~~~----~~~~v~~~~~~~~~--------~~~~~pn~v~vd~--- 201 (337)
..+++...+.... ...+ ....++++++ |+++ .++.|...+..... ......+.+++.+
T Consensus 86 ~~~~~~~~~~~~~-~~~~----~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 86 EENGRWSQIAVHA-VHSA----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EETTEEEEEEEEC-CCSS----CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred cCCCceeEeeeec-CCCc----ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 7777533332210 0111 1345777777 7666 22344433321110 0122345666766
Q ss_pred ----------CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee-----EEEeccccceeeEEEccC---CCEEEE
Q psy4771 202 ----------DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-----KVLIANLHFANGVELSAD---ESFVIV 263 (337)
Q Consensus 202 ----------~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-----~~~~~~~~~p~gia~~~d---g~~lyv 263 (337)
++.+.++. ..+|.|..+|..+++. ..+...-.....++++|+ ++ +++
T Consensus 161 ~~~~~~~~~~~~~~l~~~--------------~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~ 225 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTG--------------GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLA 225 (379)
T ss_dssp ---------CTTCEEEEE--------------ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEE
T ss_pred cccccccCCCCCCEEEEE--------------eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEE
Confidence 34433322 2345666666544321 112223345678999999 65 555
Q ss_pred EeCCCCEEEEEEeeCCCCCceeeeec--CCCCCCCceeECCCCCEEEE
Q psy4771 264 AETMSSRVHRYYLKGPKQGKSEVFID--GLPGLPDNVKRDSKGNFLVS 309 (337)
Q Consensus 264 a~~~~~~I~~~~~~g~~~~~~~~~~~--~~~g~Pdgi~~d~dG~l~va 309 (337)
+-...+.|..+++............. ...+....++++++|.+.++
T Consensus 226 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 226 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 273 (379)
T ss_dssp EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence 55556788889886532111122221 12233456788888874443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0018 Score=59.87 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=90.6
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
++++ .++ .+.+...++.|..|+..+...+..+. ........+++.++|+.+++-...+ |...|..+++
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ---------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 5566 455 45588889999999874333332221 1223467899999996666544444 7788888776
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccCceeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~ 222 (337)
...... . ......+++.+ +|++.++...
T Consensus 199 ~~~~~~----~------------------------------------~~~v~~~~~~~~~~~~l~~~s~----------- 227 (393)
T 1erj_A 199 CSLTLS----I------------------------------------EDGVTTVAVSPGDGKYIAAGSL----------- 227 (393)
T ss_dssp EEEEEE----C------------------------------------SSCEEEEEECSTTCCEEEEEET-----------
T ss_pred eEEEEE----c------------------------------------CCCcEEEEEECCCCCEEEEEcC-----------
Confidence 544332 0 12246677877 6775554432
Q ss_pred ecCCccEEEEcCCCCeeEEEe--------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI--------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~--------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..+++..... ........+++++||+.|+.+ ...+.|..+++..
T Consensus 228 ---d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~v~~wd~~~ 287 (393)
T 1erj_A 228 ---DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQN 287 (393)
T ss_dssp ---TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC--
T ss_pred ---CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEECCC
Confidence 456777777666543222 122346789999999866554 4567888888753
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00091 Score=61.06 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=89.4
Q ss_pred eEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIP 194 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~p 194 (337)
+.++.++| .|+++.....|+.+|.++++.+.+... .+ . ....
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~----~~-------~--------------------------~~~~ 127 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV----PA-------E--------------------------WVGY 127 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC----CT-------T--------------------------EEEE
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec----hh-------h--------------------------cccc
Confidence 67899999 677776555699999998887766531 10 0 0001
Q ss_pred ccEEEcCCCcEEEEcCCC--Cc---cCce--e-eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEcc-CCCEEEEEe
Q psy4771 195 NSVTVDSDGMVYWSDSST--KY---KSGL--F-EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA-DESFVIVAE 265 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~--~~---~~~~--~-~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyva~ 265 (337)
....++++|+..+.-... .+ ..+. . .......+.|+.+|.++++.+.+.........++++| ||+.|+++.
T Consensus 128 ~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~ 207 (388)
T 3pe7_A 128 GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCH 207 (388)
T ss_dssp EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred cceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEE
Confidence 112346677644321100 00 0000 0 0011234689999999998877776666678899999 998875554
Q ss_pred CC-----CCEEEEEEeeCCCCCceeeeecCCCC-CCCceeECCCCC-E-EEEe
Q psy4771 266 TM-----SSRVHRYYLKGPKQGKSEVFIDGLPG-LPDNVKRDSKGN-F-LVSL 310 (337)
Q Consensus 266 ~~-----~~~I~~~~~~g~~~~~~~~~~~~~~g-~Pdgi~~d~dG~-l-~va~ 310 (337)
.. ..+|+.++.++.. ...+.....+ ....+++.+||+ | |++.
T Consensus 208 ~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 208 EGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp CSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred ecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCCCCEEEEEec
Confidence 43 4589988876542 2222221111 123467888886 4 4444
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0027 Score=57.76 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=105.4
Q ss_pred EEEe-e-CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC--CCcEEEEECCC-cEEEEEcCC
Q psy4771 67 AVVK-H-KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK--NGALHVADAYF-GLYKVNVTT 141 (337)
Q Consensus 67 ~i~~-~-~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~--~G~lyVad~~~-gv~~vd~~~ 141 (337)
++.+ . +..+.+...++.|..|+..+...+..+. ........+.+.+ +|+++++-... .|...|..+
T Consensus 159 ~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 4445 3 3467788899999999864333332221 1113355677765 46565554444 488889877
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
++...... + .-...+.+++.++|..+++-..
T Consensus 230 ~~~~~~~~------~---------------------------------h~~~v~~v~~~p~~~~l~s~s~---------- 260 (354)
T 2pbi_B 230 GQCVQAFE------T---------------------------------HESDVNSVRYYPSGDAFASGSD---------- 260 (354)
T ss_dssp CCEEEEEC------C---------------------------------CSSCEEEEEECTTSSEEEEEET----------
T ss_pred CcEEEEec------C---------------------------------CCCCeEEEEEeCCCCEEEEEeC----------
Confidence 76443321 1 1224678999999886655433
Q ss_pred eecCCccEEEEcCCCCeeEEEecc---ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 222 LTSGSGRLIQYNPKTKKNKVLIAN---LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
+|.|..+|..+++....... ......++++++|+.|+++. ..+.|..+++.... ....+. +..+....+
T Consensus 261 ----D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~--~~~~l~-~h~~~v~~l 332 (354)
T 2pbi_B 261 ----DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLKGS--RVSILF-GHENRVSTL 332 (354)
T ss_dssp ----TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCS--EEEEEC-CCSSCEEEE
T ss_pred ----CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCc--eEEEEE-CCCCcEEEE
Confidence 45777777766543333222 22457899999998666554 56788888874321 122222 223345678
Q ss_pred eECCCCCEEEEe
Q psy4771 299 KRDSKGNFLVSL 310 (337)
Q Consensus 299 ~~d~dG~l~va~ 310 (337)
++.++|++.++.
T Consensus 333 ~~spdg~~l~sg 344 (354)
T 2pbi_B 333 RVSPDGTAFCSG 344 (354)
T ss_dssp EECTTSSCEEEE
T ss_pred EECCCCCEEEEE
Confidence 899999855554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0081 Score=53.03 Aligned_cols=212 Identities=12% Similarity=0.039 Sum_probs=116.0
Q ss_pred ccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCC
Q psy4771 65 PEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~ 141 (337)
-.++++ .++ .+++...++.|..|+..+...+..+. ........+++.++++++++-... .|..+|.++
T Consensus 68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 138 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 345666 344 55688889999999864333232221 122346789999999766664444 488889877
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-------cCCCCCCCCccEEEcCCCcEEEEcC
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE-------IDGAKPQIPNSVTVDSDGMVYWSDS 210 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~-------~~~~~~~~pn~v~vd~~G~lyvtd~ 210 (337)
++....... ..+ .-..++++++|+++ .++.|...+.. +........+.++++++|...++-.
T Consensus 139 ~~~~~~~~~---~~~----~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 139 GKCLKTLPA---HSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp CCEEEEECC---CSS----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEecC---CCC----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 764433321 111 12347778888876 22333333311 0011112345677888877544432
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc---ceeeEEEc-cCCCEEEEEeCCCCEEEEEEeeCCCCCceee
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH---FANGVELS-ADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~---~p~gia~~-~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~ 286 (337)
.+|.|..+|..+++......+.. ......++ +++ .++++-...+.|..+++..... ...
T Consensus 212 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~--~~~ 274 (312)
T 4ery_A 212 --------------LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTKEI--VQK 274 (312)
T ss_dssp --------------TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTCCE--EEE
T ss_pred --------------CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCchh--hhh
Confidence 24578888887776544333221 11223344 445 4666666678899998754321 122
Q ss_pred eecCCCCCCCceeECCCCCEEEEe
Q psy4771 287 FIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 287 ~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
+.. .......++..+++++.++.
T Consensus 275 ~~~-h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 275 LQG-HTDVVISTACHPTENIIASA 297 (312)
T ss_dssp ECC-CSSCEEEEEECSSSSEEEEE
T ss_pred hhc-cCCcEEEEeecCcCCceEEE
Confidence 221 22234567788888766654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.2e-05 Score=68.16 Aligned_cols=150 Identities=12% Similarity=0.034 Sum_probs=87.3
Q ss_pred CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEE--------------------
Q psy4771 72 KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD-------------------- 129 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad-------------------- 129 (337)
+..|+....++.|++++. ++...+..... .........++++|+++++-
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEENVVYQVPA---------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCT---------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeeeechh---------hcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 445665556678888886 33332322110 00001123457888776631
Q ss_pred ---CCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCc-
Q psy4771 130 ---AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGM- 204 (337)
Q Consensus 130 ---~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~- 204 (337)
....|+.+|.++++.+.+... ....++++++| ||+
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~~----------------------------------------~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQE----------------------------------------NQWLGHPIYRPYDDST 202 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEEE----------------------------------------SSCEEEEEEETTEEEE
T ss_pred ccCCcceEEEEECCCCceEEeecC----------------------------------------CccccccEECCCCCCE
Confidence 113488899888887776531 12357888999 886
Q ss_pred EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc--cceeeEEEccCCCEE-EEEeCCCC---EEEEEEeeC
Q psy4771 205 VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL--HFANGVELSADESFV-IVAETMSS---RVHRYYLKG 278 (337)
Q Consensus 205 lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~--~~p~gia~~~dg~~l-yva~~~~~---~I~~~~~~g 278 (337)
|.++..... .....+|+.+|.++++.+.+.... ......+++|||+.| |+++.... .|+++++++
T Consensus 203 l~~~~~~~~---------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 203 VAFCHEGPH---------DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp EEEEECSCT---------TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred EEEEEecCC---------CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence 544433210 011348999998877766555433 234567899999977 55554332 388888765
Q ss_pred C
Q psy4771 279 P 279 (337)
Q Consensus 279 ~ 279 (337)
+
T Consensus 274 g 274 (388)
T 3pe7_A 274 L 274 (388)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0026 Score=57.00 Aligned_cols=208 Identities=11% Similarity=0.019 Sum_probs=113.0
Q ss_pred eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC-cEEEEEcCCCeEEEEeccc
Q psy4771 74 DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF-GLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~ 151 (337)
.+++...+|.|..|+..+...+..+. .......++++.+ +++++++-... .|..+|..+++........
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHYV---------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEEE---------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred EEEEecCCCEEEEEEchhceEeeeec---------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 45588899999999864333332221 1224577999999 77766664444 4888898877655544210
Q ss_pred cccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC----------------------------------CCCCC
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG----------------------------------AKPQI 193 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~----------------------------------~~~~~ 193 (337)
....+ ....++++++|+.+ .++.|...+..... ..-..
T Consensus 158 ~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 158 EGHRD----EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp TSCSS----CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred ccccC----ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 01111 24557788888776 22344433311000 01122
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---------------EEEeccccceeeEEEccC-
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---------------KVLIANLHFANGVELSAD- 257 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---------------~~~~~~~~~p~gia~~~d- 257 (337)
.+.++++ |++.++.. .+|.|..+|..+++. ..+...-.....++++++
T Consensus 234 v~~~~~~--~~~l~~~~--------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 297 (366)
T 3k26_A 234 VDCVRWL--GDLILSKS--------------CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297 (366)
T ss_dssp CCEEEEE--TTEEEEEC--------------SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred EEEEEEc--CCEEEEEe--------------cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence 3445554 33333322 245666666544321 112222334567899998
Q ss_pred -CCEEEEEeCCCCEEEEEEeeCCCCCc--eeeeecC-CCCCCCceeECCCCCEEEEec
Q psy4771 258 -ESFVIVAETMSSRVHRYYLKGPKQGK--SEVFIDG-LPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 258 -g~~lyva~~~~~~I~~~~~~g~~~~~--~~~~~~~-~~g~Pdgi~~d~dG~l~va~~ 311 (337)
++.|+++ ...+.|..+++....... ...+... ..+....++++++|++.++..
T Consensus 298 ~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 298 WQKMLALG-NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp TSSEEEEE-CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEE-ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 8766555 556789999987543221 1122221 124467889999998666553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00073 Score=61.72 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=43.1
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee--c--CCCCCCCceeE--CCCCC--EEEEecCC
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI--D--GLPGLPDNVKR--DSKGN--FLVSLVCP 313 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~--~--~~~g~Pdgi~~--d~dG~--l~va~~~~ 313 (337)
...|.|++++++..+|||++... .|++|+.+.....+..++. . .+..-+.||++ .++|+ +++++-..
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred CCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 35789999999888999999984 5999997533211222221 1 22234789999 45544 66666433
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00017 Score=71.37 Aligned_cols=181 Identities=12% Similarity=0.046 Sum_probs=99.3
Q ss_pred CCe-EE-EEecCcEEEEEeCC----c-eeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC----------Cc
Q psy4771 72 KGD-LY-MGVDGGHILKLSGG----K-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY----------FG 133 (337)
Q Consensus 72 ~g~-ly-~d~~~g~I~~~~~~----~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~----------~g 133 (337)
++. |+ +...+.+|+.++.+ + ...+..... ........++++++|| .|+++... ..
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~-------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSA-------VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCC-------STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCcc-------CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 444 44 55557788888753 2 222211000 0012356789999999 45555322 24
Q ss_pred EEEEEcCC------CeEEEEe-ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-E
Q psy4771 134 LYKVNVTT------GQTEQLI-SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-V 205 (337)
Q Consensus 134 v~~vd~~~------g~~~~l~-~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-l 205 (337)
|+.+|.++ ++.+.+. . ......++++++||+ |
T Consensus 163 i~~~~~~~~~~~~~~~~~~l~~~----------------------------------------~~~~~~~~~~SpDG~~l 202 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVRELSDD----------------------------------------AHRFVTGPRLSPDGRQA 202 (662)
T ss_dssp EEEEETTSTTTTCGGGSEESSCS----------------------------------------CSSEECCCEECTTSSEE
T ss_pred EEEEECCCCccccCCceeEEEec----------------------------------------CCCcccCceECCCCCEE
Confidence 88888876 5554443 1 112346788999997 6
Q ss_pred EEEcCCCCccCceeeeeecCCccEEEEcCC-CC---eeEEEecc-ccceeeEEEccCCCEEEEEeCCCC--EEEEEEeeC
Q psy4771 206 YWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TK---KNKVLIAN-LHFANGVELSADESFVIVAETMSS--RVHRYYLKG 278 (337)
Q Consensus 206 yvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~---~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~--~I~~~~~~g 278 (337)
+++...... .......|+.+|.+ ++ +.+.+..+ -.....++++|||+ +|++....+ +|+++++++
T Consensus 203 a~~~~~~~~-------~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 203 VWLAWDHPR-------MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp EEEEECTTC-------CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTT
T ss_pred EEEECCCCC-------CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCC
Confidence 655432110 00012378888887 46 55555544 35678899999999 554443334 788887643
Q ss_pred CCCCceeeeecCCCC------C--CCceeECCCCCEEEEe
Q psy4771 279 PKQGKSEVFIDGLPG------L--PDNVKRDSKGNFLVSL 310 (337)
Q Consensus 279 ~~~~~~~~~~~~~~g------~--Pdgi~~d~dG~l~va~ 310 (337)
++ ...+...... . ...+++.++|+++++.
T Consensus 275 ~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 275 GA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp CC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred Cc---eeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence 32 2222211000 0 2356777778765554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0017 Score=58.82 Aligned_cols=183 Identities=13% Similarity=0.055 Sum_probs=100.3
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
.+++ .++ .|.+...++.|..|+. +.......+. .........++++++|+++++-...+ +...+..+
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS--------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC--------SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec--------cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 4555 344 4558888898887764 3322111111 11224467899999997666644444 66666655
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
+....+.. ..+ --...+.+++.++|++.++-..
T Consensus 93 ~~~~~~~~----~~~---------------------------------h~~~v~~v~~sp~~~~l~s~s~---------- 125 (345)
T 3fm0_A 93 DDFECVTT----LEG---------------------------------HENEVKSVAWAPSGNLLATCSR---------- 125 (345)
T ss_dssp C-EEEEEE----ECC---------------------------------CSSCEEEEEECTTSSEEEEEET----------
T ss_pred CCeEEEEE----ccC---------------------------------CCCCceEEEEeCCCCEEEEEEC----------
Confidence 54333221 111 1234688999999986655433
Q ss_pred eecCCccEEEEcCCCCee----EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCc
Q psy4771 222 LTSGSGRLIQYNPKTKKN----KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~----~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdg 297 (337)
+|.|..+|..++.. ..+.........++++|+++.|..+. ..+.|..++...........+. +..+....
T Consensus 126 ----D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~ 199 (345)
T 3fm0_A 126 ----DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YDDTVKLYREEEDDWVCCATLE-GHESTVWS 199 (345)
T ss_dssp ----TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTSCEEEEEEETTEEEEEEEEC-CCSSCEEE
T ss_pred ----CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCCcEEEEEecCCCEEEEEEec-CCCCceEE
Confidence 34555555444321 12222334567899999997555544 4567888887543111111221 12233567
Q ss_pred eeECCCCCEEEEe
Q psy4771 298 VKRDSKGNFLVSL 310 (337)
Q Consensus 298 i~~d~dG~l~va~ 310 (337)
++++++|++.++.
T Consensus 200 l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 200 LAFDPSGQRLASC 212 (345)
T ss_dssp EEECTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 7888888755544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=7.7e-05 Score=72.86 Aligned_cols=133 Identities=15% Similarity=0.132 Sum_probs=83.8
Q ss_pred ceEEECCCCcEEE-EECC----CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 115 LGIKFDKNGALHV-ADAY----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 115 ~Gl~~d~~G~lyV-ad~~----~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
..++++|||+.++ +... ..|+.+|.++++.+.+.. .
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~----~----------------------------------- 193 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS----G----------------------------------- 193 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC----S-----------------------------------
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec----C-----------------------------------
Confidence 6889999996555 3222 238999988888776642 1
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc-cceeeEE--------EccCCC
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-HFANGVE--------LSADES 259 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-~~p~gia--------~~~dg~ 259 (337)
....++++++|||+ |+.++.. ....|+++|.++++.+ +..+. ....+++ ++|||
T Consensus 194 -~~~~~~~~~SpDG~~l~~~~~~-------------~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg- 257 (582)
T 3o4h_A 194 -EGSFSSASISPGMKVTAGLETA-------------REARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG- 257 (582)
T ss_dssp -SCEEEEEEECTTSCEEEEEECS-------------SCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-
T ss_pred -CCccccceECCCCCEEEEccCC-------------CeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-
Confidence 12247899999998 5532221 1128999999988876 44332 2334455 99999
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.+|++....+++..+.+ |. ... ...+....++++ +|+++++..
T Consensus 258 ~~~~~~~~~g~~~l~~~-g~----~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 258 RLAVVARREGRSAVFID-GE----RVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp CEEEEEEETTEEEEEET-TE----EEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred cEEEEEEcCCcEEEEEE-CC----eec---cCCCceEEEEec-CCEEEEEEc
Confidence 67777766778887776 32 111 122334577888 887665543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00042 Score=69.42 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=95.0
Q ss_pred CCcceEEECCCCc-EEEEEC-CC-----cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccc-cceeeec
Q psy4771 112 GRPLGIKFDKNGA-LHVADA-YF-----GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQT-EQLISMD 183 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~-~~-----gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~-~~v~~~~ 183 (337)
..+..+++++||+ |+++.. .. .|+.+|.++++...+....... ++|+.++. +...+-.
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 102 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL--------------PGTETLSDEEKARRER 102 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC------------------------------
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc--------------cccccccchhhhhhhh
Confidence 4578999999994 665554 23 4899999988877766421100 01111100 0000000
Q ss_pred cccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC---eeEEEeccccceeeEEEccCCC
Q psy4771 184 TEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK---KNKVLIANLHFANGVELSADES 259 (337)
Q Consensus 184 ~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~---~~~~~~~~~~~p~gia~~~dg~ 259 (337)
.... ......++++++||+ |+++.. +.|+.+|.+++ +...+...-.....++++|||+
T Consensus 103 ~~~~--~~~~v~~~~~SpDg~~l~~~~~----------------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~ 164 (741)
T 2ecf_A 103 QRIA--AMTGIVDYQWSPDAQRLLFPLG----------------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG 164 (741)
T ss_dssp ------CCEESCCCEECTTSSEEEEEET----------------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS
T ss_pred hhhc--cccCcceeEECCCCCEEEEEeC----------------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC
Confidence 0000 002257899999997 555543 38888998877 6655554445678999999999
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCC---------------CCCCceeECCCCC-EEEEec
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLP---------------GLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~---------------g~Pdgi~~d~dG~-l~va~~ 311 (337)
+|+++.. +.|+.++++++. ...+.. +.. +.+.++++.+||+ |+++..
T Consensus 165 ~la~~~~--~~i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 165 FVSFIRG--RNLWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI 228 (741)
T ss_dssp EEEEEET--TEEEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred EEEEEeC--CcEEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence 8877763 589999876531 111111 000 0147799999997 555543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0063 Score=56.10 Aligned_cols=206 Identities=8% Similarity=0.046 Sum_probs=117.6
Q ss_pred EEeeCCeEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeE
Q psy4771 68 VVKHKGDLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQT 144 (337)
Q Consensus 68 i~~~~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~ 144 (337)
+...++.+.+...++.|..|+.. +....... ........+++.++|+++++-... .|..+|..+++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAET----------DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEEC----------CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeec----------CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence 44455667777789999999863 33222211 122446799999999655554334 488888876654
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCCC-------CCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDGA-------KPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~~-------~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
...... ..+. -..++. +++++ .++.|...+...... .-....++++.++|...++-.
T Consensus 169 ~~~~~~---~~~~----v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--- 236 (401)
T 4aez_A 169 LRTMAG---HQAR----VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG--- 236 (401)
T ss_dssp EEEECC---CSSC----EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---
T ss_pred EEEecC---CCCc----eEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe---
Confidence 433321 1110 112333 33333 222333332111110 123457788888877554433
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeC--CCCEEEEEEeeCCCCCceeeeecC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAET--MSSRVHRYYLKGPKQGKSEVFIDG 290 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~--~~~~I~~~~~~g~~~~~~~~~~~~ 290 (337)
.+|.|..+|..+++..... ........++++|+++.++++.. ..+.|..+++..... ...+ .
T Consensus 237 -----------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~-~- 301 (401)
T 4aez_A 237 -----------NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VNTV-D- 301 (401)
T ss_dssp -----------TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EEEE-E-
T ss_pred -----------CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EEEE-e-
Confidence 2458888888776554333 34455689999998887888765 578899999764321 1222 2
Q ss_pred CCCCCCceeECCCCCEEEEe
Q psy4771 291 LPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 291 ~~g~Pdgi~~d~dG~l~va~ 310 (337)
.......+++.++|...++.
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEE
T ss_pred CCCcEEEEEECCCCCeEEEE
Confidence 22346778888888866554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0033 Score=56.64 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=88.0
Q ss_pred CcceEEECC--CCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 113 RPLGIKFDK--NGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 113 ~P~Gl~~d~--~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
....+++++ +|+++++-... .|...|.++++....... .
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~---------------------------------- 168 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA----K---------------------------------- 168 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC----C----------------------------------
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec----C----------------------------------
Confidence 466889999 88777654444 488888877765433310 0
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE--EEec-cccceeeEEEccCCCEEEEEeC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK--VLIA-NLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~--~~~~-~~~~p~gia~~~dg~~lyva~~ 266 (337)
.....+.++++++|.+.++-.. +|.|..+|..+++.. .+.. .-...+.++++|+|..|..+.
T Consensus 169 ~~~~i~~~~~~pdg~~lasg~~--------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~- 233 (343)
T 3lrv_A 169 SDVEYSSGVLHKDSLLLALYSP--------------DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC- 233 (343)
T ss_dssp SSCCCCEEEECTTSCEEEEECT--------------TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-
T ss_pred CCCceEEEEECCCCCEEEEEcC--------------CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-
Confidence 1123688999999987665433 457888888777643 2332 345678999999998887777
Q ss_pred CCCEEEEEEeeCCCC-CceeeeecCCCCCCC---ceeECCCCCEEEEec
Q psy4771 267 MSSRVHRYYLKGPKQ-GKSEVFIDGLPGLPD---NVKRDSKGNFLVSLV 311 (337)
Q Consensus 267 ~~~~I~~~~~~g~~~-~~~~~~~~~~~g~Pd---gi~~d~dG~l~va~~ 311 (337)
.+.|..+++..... .....+.. ...+- .++++++|++.++..
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTSSEEEEEE
T ss_pred -CCeEEEEEcCCCCcceeeccccc--ccccccceEEEECCCCCEEEEec
Confidence 33899998864321 11111111 11222 399999998766643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0035 Score=57.10 Aligned_cols=216 Identities=11% Similarity=-0.006 Sum_probs=119.6
Q ss_pred cEEEeeCCeEEEEecCcEEEEEeCCcee------EEEecCccccCccccCccCCcceEEECCC----C---cEEEEECCC
Q psy4771 66 EAVVKHKGDLYMGVDGGHILKLSGGKLV------PVVKLGKDCYGFKYEQQCGRPLGIKFDKN----G---ALHVADAYF 132 (337)
Q Consensus 66 ~~i~~~~g~ly~d~~~g~I~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G---~lyVad~~~ 132 (337)
.++++....+++...+|.|..|+..... .+..+. ........+++.++ | +++++-...
T Consensus 20 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 20 FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF---------VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp EEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE---------CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred EEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe---------cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 4556644677788889999998862211 111111 11234678999988 8 666664444
Q ss_pred c-EEEEEcCCCe------EEEEecccccc-CCCCCCCCCceeeC----CCCCc-c----cccceeeecccc-------C-
Q psy4771 133 G-LYKVNVTTGQ------TEQLISMDTEI-DGAKPQIPNSVTVD----SDGQT-G----QTEQLISMDTEI-------D- 187 (337)
Q Consensus 133 g-v~~vd~~~g~------~~~l~~~~~~~-~g~~~~~P~~v~~~----~~g~~-~----~~~~v~~~~~~~-------~- 187 (337)
+ |..+|..+++ ...+....... .+ ....++++ ++|+. + .++.|...+... .
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKH----SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGS----CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred CCEEEEEccCCcccccccceeecccccccCCC----cEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 4 7667765555 33332210000 01 13457778 88887 5 223333333211 0
Q ss_pred ----------------CCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc------
Q psy4771 188 ----------------GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN------ 245 (337)
Q Consensus 188 ----------------~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~------ 245 (337)
.........+++.++| ++++... +|.|..+|..+++.......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~--------------dg~i~i~d~~~~~~~~~~~~~~~h~~ 231 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN--------------NGTVQISELSTLRPLYNFESQHSMIN 231 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT--------------TSEEEEEETTTTEEEEEEECCC---C
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC--------------CCcEEEEECCCCceeEEEeccccccc
Confidence 0012346788888888 5544432 46888888877765444443
Q ss_pred -ccceeeEEEccCCCEEEEEeCCC--CEEEEEEeeCCCCCceeeeecC------------CCCCCCceeECCCCCEEEEe
Q psy4771 246 -LHFANGVELSADESFVIVAETMS--SRVHRYYLKGPKQGKSEVFIDG------------LPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 246 -~~~p~gia~~~dg~~lyva~~~~--~~I~~~~~~g~~~~~~~~~~~~------------~~g~Pdgi~~d~dG~l~va~ 310 (337)
-.....++++++++.|+++.... +.|..+++...+ ....+... ..+....++++++|++.++.
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 45678999999998777665321 688888875331 11222110 12335678889888855554
Q ss_pred c
Q psy4771 311 V 311 (337)
Q Consensus 311 ~ 311 (337)
.
T Consensus 310 ~ 310 (397)
T 1sq9_A 310 G 310 (397)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00058 Score=62.64 Aligned_cols=182 Identities=17% Similarity=0.068 Sum_probs=108.7
Q ss_pred ccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCC
Q psy4771 65 PEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTG 142 (337)
Q Consensus 65 P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g 142 (337)
..++.+ .++.+++...++.|..|+......+..+. ........++++++|+++++-... .|..+|..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI---------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC---------CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec---------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 344555 56777788889999999863322221111 122346789999999655554444 4777887655
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
+...... + .-.....+++.++| .+++...
T Consensus 280 ~~~~~~~------~---------------------------------~~~~i~~~~~~~~~-~l~~~~~----------- 308 (425)
T 1r5m_A 280 NSQNCFY------G---------------------------------HSQSIVSASWVGDD-KVISCSM----------- 308 (425)
T ss_dssp SCSEEEC------C---------------------------------CSSCEEEEEEETTT-EEEEEET-----------
T ss_pred ccceEec------C---------------------------------CCccEEEEEECCCC-EEEEEeC-----------
Confidence 4322221 0 12235788898888 4433322
Q ss_pred ecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC------------------c
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG------------------K 283 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~------------------~ 283 (337)
+|.|..+|..+++...... .-.....++++++++.|+++. ..+.|..+++...... .
T Consensus 309 ---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 309 ---DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp ---TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHHHHC--------------CEECCE
T ss_pred ---CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCccceeeeecccccccCcccchh
Confidence 4588888887776544333 344678999999998766665 4578999988632100 1
Q ss_pred eeeeecCCCC-CCCceeECCCCCEEEEe
Q psy4771 284 SEVFIDGLPG-LPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 284 ~~~~~~~~~g-~Pdgi~~d~dG~l~va~ 310 (337)
...+.....+ ....++++++|++.++.
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred hhhhcCcccCCceEEEEccCCCceEEEE
Confidence 1222221112 46789999999855443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0003 Score=69.61 Aligned_cols=112 Identities=11% Similarity=0.063 Sum_probs=69.5
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCC------CeeEEEe-ccccceeeEEEccCCCEEEEEe
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT------KKNKVLI-ANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~------~~~~~~~-~~~~~p~gia~~~dg~~lyva~ 265 (337)
..++++++||+ |+++.....- . ........|+++|.++ ++.+.+. .+......++++|||++|+++.
T Consensus 132 ~~~~~~spDg~~l~~~~~~~~~-~----~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 132 WADPVLLPERGEVWCMAEEFTG-E----GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp EEEEEEETTTTEEEEEEEEECS-S----STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred ccCcEECCCCCEEEEEEecccC-C----CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEE
Confidence 56889999997 6555421000 0 0001124799999988 7776666 5556677899999999998766
Q ss_pred CCC-------CEEEEEEeeC-CCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 266 TMS-------SRVHRYYLKG-PKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 266 ~~~-------~~I~~~~~~g-~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
... .+|+.+++++ +.......+..+..+....++..+||+++++.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE
Confidence 432 5899999873 32223333333222335667788888855544
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0092 Score=54.67 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=106.1
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEEEEcC-CCe-EEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYKVNVT-TGQ-TEQL 147 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~~-~g~-~~~l 147 (337)
+..+++...++.|..|+..+...+..++... ..........+.+.+ +++++++-...+ |...|.. +++ +..+
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~ 245 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEF----PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCS----SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeeccc----CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 3457788999999999874433333332210 011223456788876 667777755444 7777865 222 2222
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSG 227 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G 227 (337)
. | --...+.+++.++|...++-.. +|
T Consensus 246 ~-------~---------------------------------h~~~v~~v~~~p~~~~l~s~s~--------------D~ 271 (380)
T 3iz6_a 246 H-------G---------------------------------HEGDINSVKFFPDGQRFGTGSD--------------DG 271 (380)
T ss_dssp C-------C---------------------------------CSSCCCEEEECTTSSEEEEECS--------------SS
T ss_pred C-------C---------------------------------cCCCeEEEEEecCCCeEEEEcC--------------CC
Confidence 1 1 1234688999999987666543 45
Q ss_pred cEEEEcCCCCeeEEEecc--------ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee---cCCCCCCC
Q psy4771 228 RLIQYNPKTKKNKVLIAN--------LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI---DGLPGLPD 296 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~--------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~---~~~~g~Pd 296 (337)
.|..+|..+++....... ......++++++|+.|+.+ ...+.|..++....+. ...+. .+..+...
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-YSNGDCYVWDTLLAEM--VLNLGTLQNSHEGRIS 348 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-CTTSCEEEEETTTCCE--EEEECCSCSSCCCCCC
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE-ECCCCEEEEECCCCce--EEEEecccCCCCCceE
Confidence 788888777754333321 1235789999999866554 4567888888643211 11111 12234467
Q ss_pred ceeECCCCCEEEEec
Q psy4771 297 NVKRDSKGNFLVSLV 311 (337)
Q Consensus 297 gi~~d~dG~l~va~~ 311 (337)
.+++.++|.+.++..
T Consensus 349 ~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 349 CLGLSSDGSALCTGS 363 (380)
T ss_dssp EEEECSSSSEEEEEC
T ss_pred EEEECCCCCEEEEee
Confidence 889999998666543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.83 E-value=0.002 Score=60.30 Aligned_cols=188 Identities=9% Similarity=0.025 Sum_probs=112.7
Q ss_pred ccEEEe-eC-C-eEEEEecCcEEEEEeCCc---e-eEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EE
Q psy4771 65 PEAVVK-HK-G-DLYMGVDGGHILKLSGGK---L-VPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LY 135 (337)
Q Consensus 65 P~~i~~-~~-g-~ly~d~~~g~I~~~~~~~---~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~ 135 (337)
..++++ .+ . .|.+...+|.|..|+... . ..+..... . ........++++++ ++.++++....+ |.
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI-----F-TGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEE-----E-CCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecccee-----e-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 455666 33 3 566888899999998632 1 11100000 0 12234578999999 457777755544 77
Q ss_pred EEEcCCCe----EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcC
Q psy4771 136 KVNVTTGQ----TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS 210 (337)
Q Consensus 136 ~vd~~~g~----~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~ 210 (337)
.+|..++. +..+.. .-..++.+++.++|. ++++..
T Consensus 258 i~d~~~~~~~~~~~~~~~----------------------------------------~~~~v~~i~~~p~~~~~l~tg~ 297 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTVDA----------------------------------------HTAEVNCLSFNPYSEFILATGS 297 (430)
T ss_dssp EEETTCSCSSSCSEEEEC----------------------------------------CSSCEEEEEECSSCTTEEEEEE
T ss_pred EEECCCCCCCcceeEeec----------------------------------------CCCCeEEEEeCCCCCCEEEEEe
Confidence 78876542 111110 123478899999875 665543
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCC-e-eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc-----
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTK-K-NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK----- 283 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~-~-~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~----- 283 (337)
. +|.|..+|..+. + +..+...-.....++++|+++.++++....++|..+++.......
T Consensus 298 ~--------------dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 298 A--------------DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp T--------------TSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred C--------------CCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 3 457777777652 2 333444455678999999998888888888899999986421100
Q ss_pred -----eeeee-cCCCCCCCceeECCCCC-EEEEecC
Q psy4771 284 -----SEVFI-DGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 284 -----~~~~~-~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
...+. .+....+..++++++|. +.++...
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence 11111 11223478899999998 6665543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00065 Score=72.20 Aligned_cols=208 Identities=12% Similarity=0.045 Sum_probs=119.9
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCe
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~ 143 (337)
.++++ .++ .+.+...++.|..|+..+....... ........+++.+++.++.+.....|..+|..+++
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~----------~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----------AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR 1076 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB----------CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe----------cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc
Confidence 45566 344 5567888888888876332222111 22244678999998888777655558888987776
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC------CCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG------AKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~------~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
....... ..+ ....++++++|+++ .++.|...+..... ......+.++++++|.+.++...
T Consensus 1077 ~~~~~~~---~~~----~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~-- 1147 (1249)
T 3sfz_A 1077 IERDFTC---HQG----TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD-- 1147 (1249)
T ss_dssp CCEEEEC---CSS----CCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred eeEEEcc---cCC----cEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeC--
Confidence 4433321 111 14568889999887 22333333311000 01223578889999885554432
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEE----------eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVL----------IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~----------~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
+|.|..+|..+++.... ........++++++||+.|+.++ +.|..+++..+..
T Consensus 1148 ------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~---g~v~vwd~~~g~~-- 1210 (1249)
T 3sfz_A 1148 ------------NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG---GYLKWWNVATGDS-- 1210 (1249)
T ss_dssp ------------TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---SSEEEBCSSSCBC--
T ss_pred ------------CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---CeEEEEECCCCce--
Confidence 34566666665543211 11223467899999998777664 6888888754321
Q ss_pred eeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 284 SEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 284 ~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
...+.. ..+....+++.++|...++.
T Consensus 1211 ~~~~~~-~~~~i~~~~~s~dg~~l~~~ 1236 (1249)
T 3sfz_A 1211 SQTFYT-NGTNLKKIHVSPDFRTYVTV 1236 (1249)
T ss_dssp CCCCCC-SSCCCCCCEECSSSCCEEEE
T ss_pred eeeeec-cCCcccEEEECCCCCEEEEe
Confidence 111211 12335678888888744443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0024 Score=64.31 Aligned_cols=213 Identities=10% Similarity=-0.034 Sum_probs=117.2
Q ss_pred CccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 64 GPEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 64 ~P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
...++++ .++ .+.+...+|.|..|+......+..+. ...+...+++++++|+.+++-...+ |..+|..
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ---------VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---------CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe---------cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 3456666 344 55688889999999863332222221 1224467999999996555433444 8888887
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---c-ccceeeeccccCC-------CCCCCCccEEEcC-CCcEEEE
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---Q-TEQLISMDTEIDG-------AKPQIPNSVTVDS-DGMVYWS 208 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~-~~~v~~~~~~~~~-------~~~~~pn~v~vd~-~G~lyvt 208 (337)
+++....... ..+ ....++++++|+.+ . ++.|...+..... ..-.....+++++ +|..+++
T Consensus 86 ~~~~~~~~~~---~~~----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 86 TGEKVVDFEA---HPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TCCEEEEEEC---CSS----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEec---CCC----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 7764433321 111 13457788888766 2 2333333211110 0113356777777 5654433
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEE-Eeccc-cceeeEEEcc--CCCEEEEEeCCCCEEEEEEeeCCCCCce
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV-LIANL-HFANGVELSA--DESFVIVAETMSSRVHRYYLKGPKQGKS 284 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~~-~~p~gia~~~--dg~~lyva~~~~~~I~~~~~~g~~~~~~ 284 (337)
.. .+|.|..+|..+++... +.... ...+.+++++ +++.|+++ ...+.|..+++.... ..
T Consensus 159 ~~--------------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~--~~ 221 (814)
T 3mkq_A 159 GC--------------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDLTIKIWDYQTKS--CV 221 (814)
T ss_dssp EE--------------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE-CTTSEEEEEETTTTE--EE
T ss_pred Ee--------------CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE-eCCCEEEEEECCCCc--EE
Confidence 32 24578888876554322 22222 4567899998 88755554 456789888875321 12
Q ss_pred eeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 285 EVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 285 ~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..+.. ..+....+++.++|.+.++.
T Consensus 222 ~~~~~-~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 222 ATLEG-HMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp EEEEC-CSSCEEEEEECSSSSEEEEE
T ss_pred EEEcC-CCCCEEEEEEcCCCCEEEEE
Confidence 22221 22334566777777644443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0031 Score=57.86 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=92.9
Q ss_pred eEEEEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccc
Q psy4771 74 DLYMGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~ 151 (337)
.+.+...++.|..|+.. ....+..+. ...+....+++.++|+.+++-+..+ |...|..+++.......
T Consensus 220 ~l~sgs~D~~v~~wd~~~~~~~~~~~~---------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~- 289 (380)
T 3iz6_a 220 MFISGSCDTTVRLWDLRITSRAVRTYH---------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR- 289 (380)
T ss_dssp EEEEEETTSCEEEEETTTTCCCCEEEC---------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC-
T ss_pred EEEEEECCCeEEEEECCCCCcceEEEC---------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc-
Confidence 44488888888888752 111111111 1224567999999998777765555 88889887765444321
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
..... .........++++++|++.++-.. +|.|..
T Consensus 290 -~~~~~------------------------------~~~~~~v~~~~~s~~g~~l~~g~~--------------dg~i~v 324 (380)
T 3iz6_a 290 -EPDRN------------------------------DNELPIVTSVAFSISGRLLFAGYS--------------NGDCYV 324 (380)
T ss_dssp -CCSSS------------------------------CCSSCSCSEEEECSSSSEEEEECT--------------TSCEEE
T ss_pred -ccccc------------------------------ccccCceEEEEECCCCCEEEEEEC--------------CCCEEE
Confidence 00000 012334688999999986665543 468888
Q ss_pred EcCCCCeeEEEe-----ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 232 YNPKTKKNKVLI-----ANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 232 ~d~~~~~~~~~~-----~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|..+++..... ..-...+.++++|||+.| ++-...+.|..+++.+
T Consensus 325 wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECCS
T ss_pred EECCCCceEEEEecccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecCC
Confidence 887766543322 123346789999999754 5555667888888765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0018 Score=59.04 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=97.5
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCc---cCCcceEEECCCCcEEEEECCC---c-EE
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQ---CGRPLGIKFDKNGALHVADAYF---G-LY 135 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~P~Gl~~d~~G~lyVad~~~---g-v~ 135 (337)
...++++ .++.+++...++.|..|+......+..+... ... ......++++++|+++++-... + |.
T Consensus 188 ~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 188 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECC------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred CceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecc------ccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence 3456777 4555558888999999987433333222110 001 3457799999999766654444 4 88
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCcc
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK 215 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~ 215 (337)
.+|..+++....... ... |....+. . ...-.....++++++|.++++...
T Consensus 262 i~d~~~~~~~~~~~~--~~~------~~~~~~~----------------~--~~~~~~v~~~~~~~~~~~l~~~~~---- 311 (397)
T 1sq9_A 262 LYETEFGERIGSLSV--PTH------SSQASLG----------------E--FAHSSWVMSLSFNDSGETLCSAGW---- 311 (397)
T ss_dssp EEETTTCCEEEEECB--C--------------C----------------C--BSBSSCEEEEEECSSSSEEEEEET----
T ss_pred EEECCCCcccceecc--Ccc------ccccccc----------------c--cccCCcEEEEEECCCCCEEEEEeC----
Confidence 888876654433321 000 0000000 0 000124578889998875554432
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEec------c----------------ccceeeEEEccCCC---------EEEEE
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLIA------N----------------LHFANGVELSADES---------FVIVA 264 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~~------~----------------~~~p~gia~~~dg~---------~lyva 264 (337)
+|.|..+|..+++...... . -...+.++++++++ .++++
T Consensus 312 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 312 ----------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp ----------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred ----------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 4578888887776544333 2 34568999999983 35555
Q ss_pred eCCCCEEEEEEeeC
Q psy4771 265 ETMSSRVHRYYLKG 278 (337)
Q Consensus 265 ~~~~~~I~~~~~~g 278 (337)
-...+.|..+++++
T Consensus 382 ~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 382 VCLDRSIRWFREAG 395 (397)
T ss_dssp EETTTEEEEEEEEC
T ss_pred ecCCCcEEEEEcCC
Confidence 55678899888864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0037 Score=57.69 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=87.8
Q ss_pred cceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
...+++.++|+++++-...+ |...|.++++...... + .-.
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~------~---------------------------------h~~ 166 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ------G---------------------------------HEQ 166 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------C---------------------------------CSS
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc------c---------------------------------CCC
Confidence 46899999997666644444 8888988776544432 1 112
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEcc-CCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA-DESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyva~~~~~~I 271 (337)
..+.+++.++|...++... +|.|..+|..+++.......-.....+++++ |++.|. +-...+.|
T Consensus 167 ~v~~~~~~p~~~~l~s~s~--------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~s~d~~v 231 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSG--------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA-AGSLDRAV 231 (393)
T ss_dssp CEEEEEECTTSSEEEEEET--------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE-EEETTSCE
T ss_pred CEEEEEEcCCCCEEEEecC--------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEE-EEcCCCcE
Confidence 3578899999875554432 4578888888877654444445567899998 776554 44456778
Q ss_pred EEEEeeCCCCCceeeee------cCCCCCCCceeECCCCCEEEEec
Q psy4771 272 HRYYLKGPKQGKSEVFI------DGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 272 ~~~~~~g~~~~~~~~~~------~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
..+++..... ...+. .+..+....++++++|.+.++..
T Consensus 232 ~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 232 RVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp EEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 8888653221 11110 11112345688888887555443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00026 Score=70.67 Aligned_cols=138 Identities=9% Similarity=0.011 Sum_probs=79.2
Q ss_pred cEEEe-eCCe-EEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECC---------
Q psy4771 66 EAVVK-HKGD-LYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAY--------- 131 (337)
Q Consensus 66 ~~i~~-~~g~-ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~--------- 131 (337)
.++++ .+|. +|+ ..+|.|..|+. ++...+.. +.. ........++++|||+ |.++...
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~-~~~-------~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE-GKK-------IESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC-TTT-------TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEec-ccc-------ccccccceEEECCCCCEEEEEecCccceeecce
Confidence 33444 3444 445 56788888876 33322211 100 0001367899999995 4444321
Q ss_pred CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcC
Q psy4771 132 FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS 210 (337)
Q Consensus 132 ~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~ 210 (337)
..++.+|.++++.+.+... .+ .-..+..++++|||+ |.++..
T Consensus 91 ~~i~~~d~~~~~~~~l~~~----~~---------------------------------~~~~~~~~~~SPdG~~la~~~~ 133 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPP----EV---------------------------------SNAKLQYAGWGPKGQQLIFIFE 133 (723)
T ss_dssp SEEEEEESSSCCCEECCCT----TC---------------------------------CSCCCSBCCBCSSTTCEEEEET
T ss_pred eeEEEEECCCCceEeccCC----cc---------------------------------ccccccccEECCCCCEEEEEEC
Confidence 2377888887776444321 10 112256788888886 544432
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc-------------------ceeeEEEccCCCEEEEEe
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH-------------------FANGVELSADESFVIVAE 265 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~-------------------~p~gia~~~dg~~lyva~ 265 (337)
+.|+.+|.++++...+..... ...+++++|||++|+++.
T Consensus 134 ----------------~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 134 ----------------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp ----------------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ----------------CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 267888877776655443211 236899999999887765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0018 Score=59.70 Aligned_cols=174 Identities=13% Similarity=0.108 Sum_probs=100.1
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEecc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISM 150 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~ 150 (337)
+..+.+...++.|..|+.........+. ........++++++|+++++-...+ |..+|..+++......
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~- 178 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFNLQREIDQ---------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI- 178 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSCEEEEETT---------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-
T ss_pred CCEEEEEECCCCEEEEeCCCcceeeecc---------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-
Confidence 3445588888989888864333333221 2234577999999996655544444 8888877654322221
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~ 230 (337)
+ .-.....+++.++|+..++-.. +|.|.
T Consensus 179 -----~---------------------------------h~~~v~~~~~~~~~~~l~s~~~--------------d~~v~ 206 (420)
T 3vl1_A 179 -----G---------------------------------HRATVTDIAIIDRGRNVLSASL--------------DGTIR 206 (420)
T ss_dssp -----C---------------------------------CSSCEEEEEEETTTTEEEEEET--------------TSCEE
T ss_pred -----C---------------------------------CCCcEEEEEEcCCCCEEEEEcC--------------CCcEE
Confidence 0 1223678888888875544332 34666
Q ss_pred EEcCCCCeeEEEecc-------------------------ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCcee
Q psy4771 231 QYNPKTKKNKVLIAN-------------------------LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSE 285 (337)
Q Consensus 231 ~~d~~~~~~~~~~~~-------------------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~ 285 (337)
.+|..+++....... ......++++++++.|+++. ..+.|..+++.... ...
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~--~~~ 283 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFSKE--QTI 283 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTTCC--EEE
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeEEEEECCCCc--eeE
Confidence 666666554333221 12334577789997665554 46778888875331 112
Q ss_pred eeecCCCCCCCceeECCCCC-EEEEe
Q psy4771 286 VFIDGLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 286 ~~~~~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
.+.....+....++++++|. +.++.
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred EcccccCCCceeEEEeCCCCCEEEEE
Confidence 22222223456788888887 44443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0012 Score=60.65 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=106.8
Q ss_pred ccEEEe-eC-CeEEEEecCcEEEEEeCCc----eeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCCc-EEE
Q psy4771 65 PEAVVK-HK-GDLYMGVDGGHILKLSGGK----LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYFG-LYK 136 (337)
Q Consensus 65 P~~i~~-~~-g~ly~d~~~g~I~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~g-v~~ 136 (337)
..++++ .+ ..|.+...+|.|..|+... ...+..+. ........+++.++ ++++++-...+ |..
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS---------NHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC---------CSSSCCCEEEECSSSTTBEEEECSSSCEEB
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc---------CCccceEEEEEcCCCCCEEEEEcCCCeEEE
Confidence 345666 34 4566888899898887633 22232221 22245678999998 66666644444 777
Q ss_pred EEcCCCe------EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEc
Q psy4771 137 VNVTTGQ------TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSD 209 (337)
Q Consensus 137 vd~~~g~------~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd 209 (337)
+|..+++ ...... ... ........+++.++ +.++++.
T Consensus 141 wd~~~~~~~~~~~~~~~~~---~~~---------------------------------~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLTPG---QSM---------------------------------SSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp CBTTTTSSCTTTCCCBCCC---CSC---------------------------------CSSCCCCEEEECSSCTTEEEEE
T ss_pred EECCCCccccccccccccc---ccc---------------------------------CCCCCeeEEEeCCCCCcEEEEE
Confidence 7776543 110000 000 01234688999998 5666554
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-------ccceeeEEEccCCCEEEEEeCCCC---EEEEEEeeCC
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-------LHFANGVELSADESFVIVAETMSS---RVHRYYLKGP 279 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyva~~~~~---~I~~~~~~g~ 279 (337)
.. +|.|..+|..+++....... -.....++++|++..++++....+ .|..+++...
T Consensus 185 ~~--------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 185 GS--------------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp SS--------------SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred cC--------------CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 33 45788888877765443332 345789999999854555555555 8888988643
Q ss_pred CCCceeeeecCCCCCCCceeECC-CCCEEEEe
Q psy4771 280 KQGKSEVFIDGLPGLPDNVKRDS-KGNFLVSL 310 (337)
Q Consensus 280 ~~~~~~~~~~~~~g~Pdgi~~d~-dG~l~va~ 310 (337)
.. ....+.....+....+++.+ +|++.++.
T Consensus 251 ~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 251 NT-PLQTLNQGHQKGILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp TS-CSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred CC-CcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence 11 11122101223356788887 67644444
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0011 Score=60.57 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=104.5
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEEcCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~ 141 (337)
.++++ .++ .|.+...++.|..|+..+...+..+. ........+++.+++ .++++....+ |...|..+
T Consensus 143 ~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~---------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 143 KTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN---------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213 (357)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence 45566 444 45588888888888874433333331 122446789998887 4555544444 77778776
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCC-cc----cccceeeeccccC------CCCCCCCccEEEcCCCc-EEEEc
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-TG----QTEQLISMDTEID------GAKPQIPNSVTVDSDGM-VYWSD 209 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~-~~----~~~~v~~~~~~~~------~~~~~~pn~v~vd~~G~-lyvtd 209 (337)
++........ ... ..+..+++++++. ++ .++.|...+..-. ...-...+.+++.++|. +.++-
T Consensus 214 ~~~~~~~~~~-~~~----~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 214 PKPATRIDFC-ASD----TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp SSCBCBCCCT-TCC----SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred Cceeeeeeec-ccc----ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 6533222100 001 1245577777654 33 2233433331100 00123457788888764 33332
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEcc-CCCEEEEEeCCCCEEEEEEee
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA-DESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyva~~~~~~I~~~~~~ 277 (337)
..+|.|..+|.++++.......-...++++|+| |++ ++++-...++|..+++.
T Consensus 289 --------------s~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 289 --------------SEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp --------------ETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC
T ss_pred --------------eCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECC
Confidence 234688889988887765555555678999998 676 44555556788888874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0038 Score=57.45 Aligned_cols=217 Identities=13% Similarity=0.018 Sum_probs=116.1
Q ss_pred cCccEEEee-CCeEE--EEecCcEEEEEeCCceeEEE-ecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEE
Q psy4771 63 HGPEAVVKH-KGDLY--MGVDGGHILKLSGGKLVPVV-KLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYK 136 (337)
Q Consensus 63 ~~P~~i~~~-~g~ly--~d~~~g~I~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~ 136 (337)
|....++.. +...+ +...+|.|..|+..+..... .... . ....+...++++++ +++++++-...+ |..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~-----~-~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL-----V-CGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCC-----B-CCCSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCce-----E-ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 455556662 32222 45678888888753221110 0000 0 12234567999999 776666644444 777
Q ss_pred EEcCCCe--------EEEEeccccccCCCCCCCCCceeeCCCC-Ccc----cccceeeecc-------ccC-CCCCCCCc
Q psy4771 137 VNVTTGQ--------TEQLISMDTEIDGAKPQIPNSVTVDSDG-QTG----QTEQLISMDT-------EID-GAKPQIPN 195 (337)
Q Consensus 137 vd~~~g~--------~~~l~~~~~~~~g~~~~~P~~v~~~~~g-~~~----~~~~v~~~~~-------~~~-~~~~~~pn 195 (337)
.|..++. +..+.. ..+ ....++++++| +++ .++.|...+. .+. ........
T Consensus 109 w~~~~~~~~~~~~~~~~~~~~----h~~----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 109 WEIPDGGLVLPLREPVITLEG----HTK----RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp EECCTTCCSSCBCSCSEEEEC----CSS----CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred EEccCCCCccccCCceEEecC----CCC----eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE
Confidence 7776552 222221 111 13446777777 344 2233333321 110 11123457
Q ss_pred cEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-cccc--ceeeEEEccCCCEEEEEe--CCCCE
Q psy4771 196 SVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLH--FANGVELSADESFVIVAE--TMSSR 270 (337)
Q Consensus 196 ~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~--~p~gia~~~dg~~lyva~--~~~~~ 270 (337)
.++++++|..+++-. .+|.|..+|..+++..... .... .+..+++++|++.|+++. ...+.
T Consensus 181 ~~~~~~~~~~l~~~~--------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~ 246 (402)
T 2aq5_A 181 SVDWSRDGALICTSC--------------RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ 246 (402)
T ss_dssp EEEECTTSSCEEEEE--------------TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE
T ss_pred EEEECCCCCEEEEEe--------------cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce
Confidence 888888887444332 2468888998877654433 2222 368899999996555542 45678
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEE
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLV 308 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~v 308 (337)
|..+++............+ .......++++++|++.+
T Consensus 247 i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 247 VALWDTKHLEEPLSLQELD-TSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEEEETTBCSSCSEEEECC-CCSSCEEEEEETTTTEEE
T ss_pred EEEEcCccccCCceEEecc-CCCceeEEEEcCCCCEEE
Confidence 9999886432211111112 223366788888887443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.011 Score=53.07 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=104.7
Q ss_pred ccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 65 PEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
-.++++ .++ .+.+...++.|..|+......+..+. ........+++.++|+++++-...+ +..++..+
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP---------LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---------CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee---------cCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 345566 444 55688999999999863322222221 1123467899999997766654444 66667654
Q ss_pred Ce--EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 142 GQ--TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 142 g~--~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
+. ...... ..+ .......+.+.+++.+..+.
T Consensus 129 ~~~~~~~~~~----~~~---------------------------------h~~~v~~~~~~~~~~l~s~s---------- 161 (340)
T 1got_B 129 REGNVRVSRE----LAG---------------------------------HTGYLSCCRFLDDNQIVTSS---------- 161 (340)
T ss_dssp CSBSCEEEEE----EEC---------------------------------CSSCEEEEEEEETTEEEEEE----------
T ss_pred CCCcceeEEE----ecC---------------------------------CCccEEEEEECCCCcEEEEE----------
Confidence 32 111110 111 01224556666666544322
Q ss_pred eeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
.+|.|..+|..+++...... .-.....++++|+++ ++++-...+.|..+++.... ....+.. .......+
T Consensus 162 -----~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~~-h~~~v~~v 232 (340)
T 1got_B 162 -----GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFTG-HESDINAI 232 (340)
T ss_dssp -----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS--EEEEECC-CSSCEEEE
T ss_pred -----CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEcC-CcCCEEEE
Confidence 24578888887776544333 334568899999997 45555556788888875321 1222222 23335678
Q ss_pred eECCCCCEEEEec
Q psy4771 299 KRDSKGNFLVSLV 311 (337)
Q Consensus 299 ~~d~dG~l~va~~ 311 (337)
++.++|+++++..
T Consensus 233 ~~~p~~~~l~s~s 245 (340)
T 1got_B 233 CFFPNGNAFATGS 245 (340)
T ss_dssp EECTTSSEEEEEE
T ss_pred EEcCCCCEEEEEc
Confidence 8999988665554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0031 Score=58.97 Aligned_cols=190 Identities=12% Similarity=0.126 Sum_probs=109.8
Q ss_pred CccEEEe-eC-C-eEEEEecCcEEEEEeCCc----------eeEEEecCccccCccccCccCCcceEEECCCCc-EEEEE
Q psy4771 64 GPEAVVK-HK-G-DLYMGVDGGHILKLSGGK----------LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVAD 129 (337)
Q Consensus 64 ~P~~i~~-~~-g-~ly~d~~~g~I~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad 129 (337)
.+.++++ .+ + .+++...+|.|..|+..+ ......+ ........++++++++. ++++-
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL---------RGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE---------ECCSSCCCCEEECTTSTTEEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe---------cCCCCCeEEEEeCCCCCCeEEEE
Confidence 4566676 32 3 444788888888887522 1111111 02224467999999986 66665
Q ss_pred CCCc-EEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEE
Q psy4771 130 AYFG-LYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVY 206 (337)
Q Consensus 130 ~~~g-v~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~ly 206 (337)
...| |..++..++.. ...........+ .-...+++++.+ ++.++
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------------------------h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTG---------------------------------HTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECC---------------------------------CSSCEEEEEECSSCTTEE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecC---------------------------------CCCCEeeeEEeCCCCCEE
Confidence 4444 77777764211 000000000000 123468899998 55666
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCC----eeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK----KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG 282 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~----~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~ 282 (337)
++... +|.|..+|..++ ....+...-..++.++++|+++.++++-...+.|..+++.... .
T Consensus 248 ~s~~~--------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~ 312 (430)
T 2xyi_A 248 GSVAD--------------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-L 312 (430)
T ss_dssp EEEET--------------TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-S
T ss_pred EEEeC--------------CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-C
Confidence 55543 457888887755 2223334445678999999998788777778899999986421 1
Q ss_pred ceeeeecCCCCCCCceeECCCCC-EEEEec
Q psy4771 283 KSEVFIDGLPGLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 283 ~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~ 311 (337)
....+.. ..+....+++.++|. ++++..
T Consensus 313 ~~~~~~~-h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 313 KLHSFES-HKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp CSEEEEC-CSSCEEEEEECSSCTTEEEEEE
T ss_pred CeEEeec-CCCCEEEEEECCCCCCEEEEEe
Confidence 1222222 233456788888884 555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0081 Score=55.76 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=104.5
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g 142 (337)
.++++ .++ .+.+...++.|..|+..+...+..+. ........+++.++|+.+++-...+ |...|..++
T Consensus 154 ~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~---------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~ 224 (410)
T 1vyh_C 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC---------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc---------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 44555 344 44477888888888764333332221 1224467899999997666654444 777888776
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
....... + .-...+.++++++|.++++...
T Consensus 225 ~~~~~~~------~---------------------------------h~~~v~~~~~~~~g~~l~s~s~----------- 254 (410)
T 1vyh_C 225 YCVKTFT------G---------------------------------HREWVRMVRPNQDGTLIASCSN----------- 254 (410)
T ss_dssp CEEEEEE------C---------------------------------CSSCEEEEEECTTSSEEEEEET-----------
T ss_pred cEEEEEe------C---------------------------------CCccEEEEEECCCCCEEEEEcC-----------
Confidence 5432221 1 1123567888888886655443
Q ss_pred ecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccC--------------------CCEEEEEeCCCCEEEEEEeeCCCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSAD--------------------ESFVIVAETMSSRVHRYYLKGPKQ 281 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d--------------------g~~lyva~~~~~~I~~~~~~g~~~ 281 (337)
+|.|..+|..+++..... ..-...+.++++|+ |. ++++-...+.|..+++..+.
T Consensus 255 ---D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~- 329 (410)
T 1vyh_C 255 ---DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM- 329 (410)
T ss_dssp ---TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE-
T ss_pred ---CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc-
Confidence 356777777666543322 33345677888876 43 45555566788888875321
Q ss_pred CceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 282 GKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 282 ~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
....+.. ..+....++++++|.+.++.
T Consensus 330 -~~~~~~~-h~~~v~~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 330 -CLMTLVG-HDNWVRGVLFHSGGKFILSC 356 (410)
T ss_dssp -EEEEEEC-CSSCEEEEEECSSSSCEEEE
T ss_pred -eEEEEEC-CCCcEEEEEEcCCCCEEEEE
Confidence 1222222 22335678888888744443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0093 Score=60.02 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=103.8
Q ss_pred cEEEe-e-CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcE-EEEECCCcEEEEEcCCC
Q psy4771 66 EAVVK-H-KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGAL-HVADAYFGLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~-~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~l-yVad~~~gv~~vd~~~g 142 (337)
.++++ . +..|.+...+|.|..|+..+...+..+. ...+....+++.++|.. +++.....|..+|.+++
T Consensus 59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE---------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 45555 3 4456688889999999863333232221 12245778999999954 44443344777787655
Q ss_pred -eEEEEeccccccCCCCCCCCCceeeCC-CCCcc----cccceeeecccc-------CCCCCCCCccEEEcC--CCcEEE
Q psy4771 143 -QTEQLISMDTEIDGAKPQIPNSVTVDS-DGQTG----QTEQLISMDTEI-------DGAKPQIPNSVTVDS--DGMVYW 207 (337)
Q Consensus 143 -~~~~l~~~~~~~~g~~~~~P~~v~~~~-~g~~~----~~~~v~~~~~~~-------~~~~~~~pn~v~vd~--~G~lyv 207 (337)
....... ...+ ....+++++ +|+.+ .++.|...+... ........+.+++.+ +|...+
T Consensus 130 ~~~~~~~~---~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 130 WALEQTFE---GHEH----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp SEEEEEEE---CCSS----CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred ceEEEEEc---CCCC----cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 3333222 1111 124466777 66555 223333333111 011114456777777 666444
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+-. .+|.|..+|..+++...... .......++++|+++.|+++. ..+.|..+++..
T Consensus 203 ~~~--------------~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~ 259 (814)
T 3mkq_A 203 TAS--------------DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSST 259 (814)
T ss_dssp EEC--------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTT
T ss_pred EEe--------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Confidence 433 24688888887776543333 345568899999998665554 457788888753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0033 Score=55.00 Aligned_cols=142 Identities=10% Similarity=0.082 Sum_probs=90.7
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~ 151 (337)
+..+++...++.|..|+.++.... +. .........+++.++|.++.+.....|..+|..+++......
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~~~~~--~~--------~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-- 222 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDKVIKT--FS--------GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYE-- 222 (313)
T ss_dssp TTEEEEEETTSCEEEEETTEEEEE--EC--------SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred CCEEEEEECCCCEEEEecCceEEE--Ee--------ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhh--
Confidence 445557778888888885443222 11 112345678999999986666544458888887665443332
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
+ .....+.++++++|.++.+.. +|.|..
T Consensus 223 ----~---------------------------------~~~~i~~~~~~~~~~l~~~~~---------------dg~v~i 250 (313)
T 3odt_A 223 ----G---------------------------------HESFVYCIKLLPNGDIVSCGE---------------DRTVRI 250 (313)
T ss_dssp ----C---------------------------------CSSCEEEEEECTTSCEEEEET---------------TSEEEE
T ss_pred ----c---------------------------------CCceEEEEEEecCCCEEEEec---------------CCEEEE
Confidence 0 123467899999887554332 468888
Q ss_pred EcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 232 YNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 232 ~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
+|..+++...... .......++++++++ +++ -...+.|..++++..
T Consensus 251 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 251 WSKENGSLKQVITLPAISIWSVDCMSNGD-IIV-GSSDNLVRIFSQEKS 297 (313)
T ss_dssp ECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE-EETTSCEEEEESCGG
T ss_pred EECCCCceeEEEeccCceEEEEEEccCCC-EEE-EeCCCcEEEEeCCCC
Confidence 8887776543333 334568899999997 443 445678999988643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.66 E-value=0.018 Score=51.74 Aligned_cols=191 Identities=6% Similarity=-0.044 Sum_probs=98.6
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g 142 (337)
.++++ .++ .+.+...++.|..|+..+...+..+. ........+++.++|+.+++-... .|...|..+.
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~---------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV---------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE---------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc---------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 45556 344 55688889999999863332232221 122446789999999665554333 4777787644
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
....... ..+ .......+++.+++.-...-. ....+...
T Consensus 151 ~~~~~~~----~~~---------------------------------~~~~v~~~~~~~~~~~~~~~~----~~~~~l~s 189 (343)
T 2xzm_R 151 CKFSSAE----KEN---------------------------------HSDWVSCVRYSPIMKSANKVQ----PFAPYFAS 189 (343)
T ss_dssp EEEECCT----TTS---------------------------------CSSCEEEEEECCCCCSCSCCC----SSCCEEEE
T ss_pred ceeeeec----ccC---------------------------------CCceeeeeeeccccccccccC----CCCCEEEE
Confidence 3322221 001 012234555555431000000 00000111
Q ss_pred ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
...+|.|..+|........+...-...+.++++|||+.|..+ ...+.|..+++..... ....+.. ......+++++
T Consensus 190 ~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg-s~dg~v~iwd~~~~~~-~~~~~~~--~~~v~~v~~sp 265 (343)
T 2xzm_R 190 VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATG-GKDKKLLIWDILNLTY-PQREFDA--GSTINQIAFNP 265 (343)
T ss_dssp EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTCEEEEEESSCCSS-CSEEEEC--SSCEEEEEECS
T ss_pred EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEE-cCCCeEEEEECCCCcc-cceeecC--CCcEEEEEECC
Confidence 233567777775433333333344456889999999865544 4567898888742211 1122211 12256788888
Q ss_pred CCCEEEEe
Q psy4771 303 KGNFLVSL 310 (337)
Q Consensus 303 dG~l~va~ 310 (337)
+|.+.++.
T Consensus 266 ~~~~la~~ 273 (343)
T 2xzm_R 266 KLQWVAVG 273 (343)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEE
Confidence 88755443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0034 Score=65.75 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=74.2
Q ss_pred CCcceEEECCCCc-EEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
..+..++++++|+ |+++.....|+.+|.++++...+... .
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---------------------------------------~ 419 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---------------------------------------R 419 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------------------------------S
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---------------------------------------C
Confidence 4567899999995 55555445699999988887766531 1
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.....++++++||+ |.++.....+. ......+.|+.+|.++++...+.........+++++||+.||++..
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~-----~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGE-----TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSST-----TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCccceEECCCCCeEEEEecCcccc-----ccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 12347889999997 44443211000 0001235889999988886666666666788999999999988764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0022 Score=58.69 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=93.2
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEE--EecCccccCcccc---CccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPV--VKLGKDCYGFKYE---QQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQT 144 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~--~~~g~~~~~~~~~---~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~ 144 (337)
+.++.+|+...+++++.++..+.+.. ...+........+ .....| .+ .+|.+|++....+++.+|+++|+.
T Consensus 186 ~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p---~~-~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 186 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP---VV-VNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC---EE-ETTEEEEECTTSCEEEEETTTCCE
T ss_pred EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc---EE-ECCEEEEEecCcEEEEEECCCCcE
Confidence 35778888888888888886322222 1111100000000 011112 22 257899987556699999988876
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeec
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~ 224 (337)
..... ......++++ ++++|+++.
T Consensus 262 ~w~~~-----------------------------------------~~~~~~~~~~-~~~l~~~~~-------------- 285 (376)
T 3q7m_A 262 MWKRE-----------------------------------------LGSVNDFIVD-GNRIYLVDQ-------------- 285 (376)
T ss_dssp EEEEC-----------------------------------------CCCEEEEEEE-TTEEEEEET--------------
T ss_pred Eeecc-----------------------------------------CCCCCCceEE-CCEEEEEcC--------------
Confidence 54332 1123345554 568988764
Q ss_pred CCccEEEEcCCCCeeEEEeccc--cceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANL--HFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~--~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
.|.|+.+|+++|+...-...+ ......++. ++.||+... .+.|+.++.+.++...... ... ........+ .
T Consensus 286 -~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~-~g~l~~~d~~tG~~~~~~~-~~~-~~~~~~~~~-~ 358 (376)
T 3q7m_A 286 -NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDS-EGYLHWINVEDGRFVAQQK-VDS-SGFQTEPVA-A 358 (376)
T ss_dssp -TCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEE-CCT-TCBCSCCEE-E
T ss_pred -CCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeC-CCeEEEEECCCCcEEEEEe-cCC-CcceeCCEE-E
Confidence 357889998888764333211 122233333 347998875 4689999875432111111 100 111122233 3
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
+|++|++...+
T Consensus 359 ~~~l~v~~~~G 369 (376)
T 3q7m_A 359 DGKLLIQAKDG 369 (376)
T ss_dssp TTEEEEEBTTS
T ss_pred CCEEEEEeCCC
Confidence 67899887543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0011 Score=69.48 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=89.7
Q ss_pred CcceEEECCCC-cEEEEECCCcEE-EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 113 RPLGIKFDKNG-ALHVADAYFGLY-KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 113 ~P~Gl~~d~~G-~lyVad~~~gv~-~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....+++. +| .|+++.....++ .++.++++...+.. .
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~----------------------------------------~ 377 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEE----------------------------------------N 377 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCC----------------------------------------C
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecC----------------------------------------C
Confidence 46678888 87 565554434588 88888776554431 1
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc-cceeeEEEccCCCEEEEEeCC-
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-HFANGVELSADESFVIVAETM- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-~~p~gia~~~dg~~lyva~~~- 267 (337)
...+..+++++||+ |+++.. .+.|+.+|.++++...+..+. .....++++|||++|.++...
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~---------------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVAND---------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEET---------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred ccceeeeEECCCCCEEEEECC---------------CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCc
Confidence 23467899999997 444432 248899999888877666333 334789999999988766542
Q ss_pred --------CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEec
Q psy4771 268 --------SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 268 --------~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~ 311 (337)
.+.|+.+++++. ....+... ......+++++||+ +|.+..
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g---~~~~l~~~-~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGR---KIFAATTE-NSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTT---EEEECSCS-SSBEEEEEECTTSCEEEEEES
T ss_pred cccccCCCCCeEEEEECCCC---cEEEeeCC-CcccCCceEcCCCCEEEEEec
Confidence 257888887643 22222221 12245678999997 555543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0063 Score=53.86 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=92.0
Q ss_pred ccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 65 PEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
-.++++ .++ .|.+...+|.|..|+..+...+..+. ........+++.++|+++++-...+ |...|.++
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ---------VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---------CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee---------ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 346666 344 56688899999999874333332221 1112346788999987666644444 88888877
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
++...... + --...+.+++.+++.+.++-..
T Consensus 87 ~~~~~~~~------~---------------------------------h~~~v~~~~~~~~~~~l~sgs~---------- 117 (304)
T 2ynn_A 87 GEKVVDFE------A---------------------------------HPDYIRSIAVHPTKPYVLSGSD---------- 117 (304)
T ss_dssp CCEEEEEE------C---------------------------------CSSCEEEEEECSSSSEEEEEET----------
T ss_pred CcEEEEEe------C---------------------------------CCCcEEEEEEcCCCCEEEEECC----------
Confidence 65433221 1 1123678999999886655433
Q ss_pred eecCCccEEEEcCCCC-eeEE-EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 222 LTSGSGRLIQYNPKTK-KNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~-~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+|.|..+|..++ .... +...-.....++++|++..++++-...+.|..+++.
T Consensus 118 ----D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 118 ----DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (304)
T ss_dssp ----TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred ----CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 456777776554 3322 223344568899998433355555567889988874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0073 Score=53.96 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=94.5
Q ss_pred ccEEEe-e-CCeEEEEecCcEEEEEeCCc-eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcC
Q psy4771 65 PEAVVK-H-KGDLYMGVDGGHILKLSGGK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVT 140 (337)
Q Consensus 65 P~~i~~-~-~g~ly~d~~~g~I~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~ 140 (337)
..++++ . +..+++...+|.|..|+... ...+..+. .......+++++++|+++++-.. ..|..+|..
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID---------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---------cCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 344555 3 44566888899999998743 23232221 12245678999999965555433 448888987
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCcee
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLF 219 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~ 219 (337)
+++...... .......++++++|. ++++...... .+.
T Consensus 249 ~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~ 286 (369)
T 3zwl_B 249 TLQVLKKYE----------------------------------------TDCPLNTAVITPLKEFIILGGGQEAK--DVT 286 (369)
T ss_dssp TCCEEEEEE----------------------------------------CSSCEEEEEECSSSSEEEEEECCC-------
T ss_pred CCceeeeec----------------------------------------CCCCceeEEecCCCceEEEeecCCCc--eEE
Confidence 776544432 112356788888887 4444332210 000
Q ss_pred ee-eecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 220 EG-LTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 220 ~~-~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.. .......+..+|..+++..... ........+++++|++.|+.+. ..+.|..++++.
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~ 346 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG-EDGFIRLHHFEK 346 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEECH
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc-CCCeEEEEECcc
Confidence 00 1122236778887776554333 3445678899999998655554 467888888864
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00056 Score=66.98 Aligned_cols=75 Identities=15% Similarity=0.253 Sum_probs=52.9
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEeC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAET 266 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~~ 266 (337)
.+..|..|++|++|+||+++.+.....+ ......+..++.+++.++++..++.+ -+-..|++++||+++|||+-.
T Consensus 474 ~f~~PDNL~fd~~G~LwI~eDg~~~~~~--~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 474 MFNSPDGLGFDKAGRLWILTDGDSSNAG--DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCCCEEEEEECTTCCEEEEECCCCCCSG--GGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CccCCcceEECCCCCEEEEecCCCcccc--cccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 5789999999999999997665321000 00112334688889988888776644 245679999999999999743
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0085 Score=63.58 Aligned_cols=210 Identities=12% Similarity=0.040 Sum_probs=117.0
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g 142 (337)
.++++ .++ .+.+...+|.|..|+..+...+..+. ...+...+++++++|+++++-...+ |...|..++
T Consensus 619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK---------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec---------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 45566 455 45588889999999874433333332 2234567899999996666544444 888898877
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCC--cc---c-ccceeeeccc-------cCCCCCCCCccEEEcCCCcEEEEc
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQ--TG---Q-TEQLISMDTE-------IDGAKPQIPNSVTVDSDGMVYWSD 209 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~--~~---~-~~~v~~~~~~-------~~~~~~~~pn~v~vd~~G~lyvtd 209 (337)
+....... ..+. -..++++++++ ++ + ++.|...+.. +.+ .-...+.+++.++|...++.
T Consensus 690 ~~~~~~~~---~~~~----v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 690 KLVHTYDE---HSEQ----VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp CEEEEEEC---CSSC----EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-CSSCEEEEEECSSTTEEEEE
T ss_pred ceEEEEcC---CCCc----EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-CCCCEEEEEEecCCCEEEEE
Confidence 65443321 1111 12345555332 32 1 1222222211 111 12346788888888755554
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc--------------ccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--------------LHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
.. +|.|..+|..+++....... ......+++++||+.+.++. .+.|..++
T Consensus 762 s~--------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d 825 (1249)
T 3sfz_A 762 SA--------------DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFD 825 (1249)
T ss_dssp ES--------------SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEE
T ss_pred EC--------------CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEE
Confidence 33 34666666655543222110 11456789999999888877 57888888
Q ss_pred eeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 276 LKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 276 ~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
+.... ....+.....+....+++.++|++.++.
T Consensus 826 ~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 858 (1249)
T 3sfz_A 826 IHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIA 858 (1249)
T ss_dssp TTTCC--EEEEEECSSSSCCCEEEECSSTTEEEEE
T ss_pred ecCCC--ceeEEcCCCCCceEEEEEcCCCCEEEEE
Confidence 75432 1222222223346678888888755544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0039 Score=58.53 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=85.2
Q ss_pred CcceEEECCCCcE-EEEECCCc-EEEEEcC--CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 113 RPLGIKFDKNGAL-HVADAYFG-LYKVNVT--TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 113 ~P~Gl~~d~~G~l-yVad~~~g-v~~vd~~--~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
...+++++++|+. +++-...+ |..+|.. +++....... ..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~---------------------------------- 147 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR--FC---------------------------------- 147 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE--EE----------------------------------
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec--cc----------------------------------
Confidence 4678999999965 45543334 6666665 5543333210 00
Q ss_pred CCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-----EEeccccceeeEEEccC---CC
Q psy4771 189 AKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-----VLIANLHFANGVELSAD---ES 259 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-----~~~~~~~~p~gia~~~d---g~ 259 (337)
....+++++++++|. |++++. .|.++.++..+++.. .+.......+.++++|| ++
T Consensus 148 -~~~~v~~~~~sp~~~~l~~~~~---------------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 211 (450)
T 2vdu_B 148 -FSKRPNAISIAEDDTTVIIADK---------------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ 211 (450)
T ss_dssp -CSSCEEEEEECTTSSEEEEEET---------------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE
T ss_pred -CCCCceEEEEcCCCCEEEEEeC---------------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc
Confidence 123468899999987 443332 357788876655432 22223446788999999 76
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.|+.+. ..+.|..+++..... ...+..+..+....+++. +|++.++..
T Consensus 212 ~l~s~~-~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~ 259 (450)
T 2vdu_B 212 FIITSD-RDEHIKISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLSAG 259 (450)
T ss_dssp EEEEEE-TTSCEEEEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEEEEE
T ss_pred EEEEEc-CCCcEEEEECCCCce--eeeeecCCCCceEEEEEC-CCCEEEEEe
Confidence 555554 567899999864321 223332233446788898 887555544
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.02 Score=52.97 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=46.7
Q ss_pred CCccEEEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee-----EEEecccc------------ceeeEEE
Q psy4771 193 IPNSVTVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-----KVLIANLH------------FANGVEL 254 (337)
Q Consensus 193 ~pn~v~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-----~~~~~~~~------------~p~gia~ 254 (337)
..+.++++++| +++++-.. +|.|..+|..+++. ..+..... ....+++
T Consensus 228 ~v~~~~~~p~~~~~l~s~~~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYSSS--------------KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKF 293 (447)
T ss_dssp CEEEEEECSSCTTEEEEEET--------------TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEE
T ss_pred ceEEEEECCCCCcEEEEEeC--------------CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEE
Confidence 46788888887 65544432 45788888776653 33332222 5688999
Q ss_pred ccCCCEEEEEeCCCCEEEEEEee
Q psy4771 255 SADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 255 ~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+++|+.|..+.. +.|..+++.
T Consensus 294 s~~g~~l~~~~~--~~v~iwd~~ 314 (447)
T 3dw8_B 294 SHSGRYMMTRDY--LSVKVWDLN 314 (447)
T ss_dssp CTTSSEEEEEES--SEEEEEETT
T ss_pred CCCCCEEEEeeC--CeEEEEeCC
Confidence 999987776665 899999885
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.012 Score=54.68 Aligned_cols=178 Identities=9% Similarity=0.059 Sum_probs=101.3
Q ss_pred EEEe-eC-CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVK-HK-GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~-g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
++++ .+ ..+++...++.|..|+......+..+. ........+.++++|.++++-...+ |...|..+++
T Consensus 197 ~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~---------~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT---------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 4445 33 455678888888888863322222221 1123356789999997776654444 7778877665
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC--------------------C
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD--------------------G 203 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~--------------------G 203 (337)
....... .. ...+.+++.++ |
T Consensus 268 ~~~~~~~---h~------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 268 CKAELRE---HR------------------------------------HVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp EEEEECC---CS------------------------------------SCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred eeeEecC---CC------------------------------------ceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 4433210 00 11233333332 2
Q ss_pred cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC
Q psy4771 204 MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG 282 (337)
Q Consensus 204 ~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~ 282 (337)
.+.++ ...+|.|..+|..+++..... ..-...++++++++|+.|+.+. ..+.|..+++...+.
T Consensus 309 ~~l~s--------------gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~i~vwd~~~~~~- 372 (410)
T 1vyh_C 309 PFLLS--------------GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKRC- 372 (410)
T ss_dssp CEEEE--------------EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-TTTEEEEECCTTSCC-
T ss_pred CEEEE--------------EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce-
Confidence 22222 334568888888777653333 3344568999999998665544 567888888754322
Q ss_pred ceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 283 KSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 283 ~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
...+.. ..+....+++.++|.+.++.
T Consensus 373 -~~~~~~-h~~~v~~l~~~~~~~~l~sg 398 (410)
T 1vyh_C 373 -MKTLNA-HEHFVTSLDFHKTAPYVVTG 398 (410)
T ss_dssp -CEEEEC-CSSCEEEEEECSSSSCEEEE
T ss_pred -EEEEcC-CCCcEEEEEEcCCCCEEEEE
Confidence 222222 23345778888888755543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.015 Score=50.66 Aligned_cols=177 Identities=12% Similarity=0.016 Sum_probs=104.1
Q ss_pred cEEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEE-EECCCcEEEEEcCCCe
Q psy4771 66 EAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHV-ADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 66 ~~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyV-ad~~~gv~~vd~~~g~ 143 (337)
.++.++++.+++...++.|..|+.++...... ........+.+.+ +++.++ +.....|..+|.. ..
T Consensus 108 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~ 175 (313)
T 3odt_A 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQ-----------AHNASVWDAKVVSFSENKFLTASADKTIKLWQND-KV 175 (313)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTEEEEEEE-----------CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-EE
T ss_pred EEEEecCCEEEEEeCCCCEEEEcCCcEEEecc-----------cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-ce
Confidence 45555677777888999999998544332211 1223456777766 664444 4433447777732 22
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
...+.. . .......+++.++|.++.+..
T Consensus 176 ~~~~~~---~------------------------------------~~~~i~~~~~~~~~~~~~~~~------------- 203 (313)
T 3odt_A 176 IKTFSG---I------------------------------------HNDVVRHLAVVDDGHFISCSN------------- 203 (313)
T ss_dssp EEEECS---S------------------------------------CSSCEEEEEEEETTEEEEEET-------------
T ss_pred EEEEec---c------------------------------------CcccEEEEEEcCCCeEEEccC-------------
Confidence 222211 0 123467888888888443332
Q ss_pred cCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
+|.|..+|..+++..... ........+++++++. |+. -...+.|..+++...+ ....+.. ..+....+++.+
T Consensus 204 --dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~-~~~dg~v~iwd~~~~~--~~~~~~~-~~~~i~~~~~~~ 276 (313)
T 3odt_A 204 --DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVS-CGEDRTVRIWSKENGS--LKQVITL-PAISIWSVDCMS 276 (313)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEE-EETTSEEEEECTTTCC--EEEEEEC-SSSCEEEEEECT
T ss_pred --CCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEE-EecCCEEEEEECCCCc--eeEEEec-cCceEEEEEEcc
Confidence 457888888776554333 3345678999999994 444 4456789998875432 1222222 223356788999
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
+|.+.++...+
T Consensus 277 ~~~~~~~~~dg 287 (313)
T 3odt_A 277 NGDIIVGSSDN 287 (313)
T ss_dssp TSCEEEEETTS
T ss_pred CCCEEEEeCCC
Confidence 99876665544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.023 Score=50.63 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=104.9
Q ss_pred cEEEe-e-C-CeEEEEecCcEEEEEeCCc-----eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEE
Q psy4771 66 EAVVK-H-K-GDLYMGVDGGHILKLSGGK-----LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYK 136 (337)
Q Consensus 66 ~~i~~-~-~-g~ly~d~~~g~I~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~ 136 (337)
.++++ . + ..|.+...++.|..|+... ...+..+. ........+++.++|+.+++-...+ |..
T Consensus 21 ~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 21 TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK---------GHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE---------CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe---------CCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 45555 2 3 3566889999888886411 11122221 1223466899999997666654444 888
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccC
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKS 216 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~ 216 (337)
.|.++++...... + .-...+.++++++|.+.++-..
T Consensus 92 wd~~~~~~~~~~~------~---------------------------------h~~~v~~~~~~~~~~~l~s~s~----- 127 (319)
T 3frx_A 92 WDVATGETYQRFV------G---------------------------------HKSDVMSVDIDKKASMIISGSR----- 127 (319)
T ss_dssp EETTTTEEEEEEE------C---------------------------------CSSCEEEEEECTTSCEEEEEET-----
T ss_pred EECCCCCeeEEEc------c---------------------------------CCCcEEEEEEcCCCCEEEEEeC-----
Confidence 8988776443321 1 1123578889998886655443
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCC-----EEEEEeCCCCEEEEEEeeCCCCCceeeeecCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES-----FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGL 291 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~-----~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~ 291 (337)
+|.|..+|..+.....+.........+++.|++. ..+++-...+.|..+++.... ....+.. .
T Consensus 128 ---------D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~-h 195 (319)
T 3frx_A 128 ---------DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIG-H 195 (319)
T ss_dssp ---------TSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEECC-C
T ss_pred ---------CCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeecC-C
Confidence 3467677776555555544445567788877432 245555566788888865321 1112221 2
Q ss_pred CCCCCceeECCCCCEEEEec
Q psy4771 292 PGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 292 ~g~Pdgi~~d~dG~l~va~~ 311 (337)
.+....+++.++|++.++..
T Consensus 196 ~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 196 NSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp CSCEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEe
Confidence 23346678888887555543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00039 Score=63.27 Aligned_cols=177 Identities=8% Similarity=-0.032 Sum_probs=90.0
Q ss_pred CeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCe-EEEEe
Q psy4771 73 GDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQ-TEQLI 148 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~-~~~l~ 148 (337)
..|.+...++.|..|+. +....+..+. ........+++.++|+++++-.. ..|...|..+++ .....
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGNGWKHARTFS---------DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp SEEECCCSSSCBCEEEEETTEEEECCCBC---------CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE
T ss_pred CEEEEecCCCEEEEEEccCCceEEEEEEe---------cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence 34446667777777764 3212222221 22244678999999965555333 447777776554 11111
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCcc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
. ..+ .-.....+++.++|+..++-. .+|.
T Consensus 95 ~----~~~---------------------------------~~~~v~~~~~~~~~~~l~~~~--------------~d~~ 123 (377)
T 3dwl_C 95 V----LLR---------------------------------LNRAATFVRWSPNEDKFAVGS--------------GARV 123 (377)
T ss_dssp E----CCC---------------------------------CSSCEEEEECCTTSSCCEEEE--------------SSSC
T ss_pred E----ecc---------------------------------cCCceEEEEECCCCCEEEEEe--------------cCCe
Confidence 0 000 122357888888876433322 2346
Q ss_pred EEEEcCCCCe----eEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC-------------ceeeeec-
Q psy4771 229 LIQYNPKTKK----NKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG-------------KSEVFID- 289 (337)
Q Consensus 229 v~~~d~~~~~----~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~-------------~~~~~~~- 289 (337)
|..+|..+++ ...+.. .-.....++++|+++.|+.+. ..+.|..+++...... ..+....
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (377)
T 3dwl_C 124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202 (377)
T ss_dssp EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence 7777766654 333333 345678999999998666554 4577888887421100 0111111
Q ss_pred CCCCCCCceeECCCCCEEEEe
Q psy4771 290 GLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 290 ~~~g~Pdgi~~d~dG~l~va~ 310 (337)
...+....++++++|++.++.
T Consensus 203 ~~~~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 203 PSGGWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp CCSSSEEEEEECTTSSCEEEE
T ss_pred cCCceEEEEEECCCCCEEEEE
Confidence 122335678899999744443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0027 Score=54.07 Aligned_cols=94 Identities=20% Similarity=0.152 Sum_probs=59.6
Q ss_pred eeeeeCCCCCCcCcchhccccccCceeccCcccCccEEEe-eCCeEEEEecCcEEEEEeCCc--eeE----EEecCcccc
Q psy4771 31 TAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVK-HKGDLYMGVDGGHILKLSGGK--LVP----VVKLGKDCY 103 (337)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~P~~i~~-~~g~ly~d~~~g~I~~~~~~~--~~~----~~~~g~~~~ 103 (337)
+.|.-+.|..- .+..+..+.++..+....-.++++ .+|.||+- .+|.++++++.+ ... -..+|..
T Consensus 14 ~~y~G~~P~~~-----~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-- 85 (236)
T 1tl2_A 14 KFYQGTYPQNK-----NDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG-- 85 (236)
T ss_dssp EEEEESCCCST-----TCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECS--
T ss_pred cEEecCCCCCc-----ccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccc--
Confidence 45555555521 234555677777765667789999 69999944 889999998722 100 1112210
Q ss_pred CccccCccCCcceEEECCCCcEEEEECCCcEEEEEc
Q psy4771 104 GFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNV 139 (337)
Q Consensus 104 ~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~ 139 (337)
++ ..=..+.+|++|.||++. ...|+++++
T Consensus 86 Gw------~~F~a~~fD~~G~LYav~-dG~iyr~~p 114 (236)
T 1tl2_A 86 GW------NQFQFLFFDPNGYLYAVS-KDKLYKASP 114 (236)
T ss_dssp CG------GGCSEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cc------ccceEEEECCCCCEEEeC-CCEEEEeCC
Confidence 00 113479999999999994 344889986
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0062 Score=60.59 Aligned_cols=156 Identities=8% Similarity=-0.046 Sum_probs=85.4
Q ss_pred cceEEECCCCcEEEEE--CC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 114 PLGIKFDKNGALHVAD--AY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad--~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
...+++.+||+++++. .. ..|+.+|.++++...+... ...+.
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~------------------------------- 303 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAW------------------------------- 303 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSC-------------------------------
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--ccCCE-------------------------------
Confidence 4569999999665432 11 1388889988876665431 00110
Q ss_pred CCCCCCccEEEcCCCc-EEEE-cCCCCccCceeeeeecCCccEEEEc-CCCCe---eEEEecc-ccceeeEEEccCCCEE
Q psy4771 189 AKPQIPNSVTVDSDGM-VYWS-DSSTKYKSGLFEGLTSGSGRLIQYN-PKTKK---NKVLIAN-LHFANGVELSADESFV 261 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~-lyvt-d~~~~~~~~~~~~~~~~~G~v~~~d-~~~~~---~~~~~~~-~~~p~gia~~~dg~~l 261 (337)
....+..+++++||+ |++. ...... ......|+.+| ..+++ ...+..+ ......++++|||+.|
T Consensus 304 -~~~~~~~~~~spdg~~l~~~~~~~~~~--------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 304 -LHRQNEEPVFSKDGRKFFFIRAIPQGG--------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (723)
T ss_dssp -CCCCCCCCEECTTSCSEEEEEEECCSS--------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred -EeccCCCceEcCCCCeEEEEEecccCC--------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEE
Confidence 001124788999997 6654 322110 00123788888 45555 4444322 2223346899999999
Q ss_pred EEEeCCC----CEEEEEEeeCCCCCceeeeecC--CCCCCCceeECCCCCEEEEecCC
Q psy4771 262 IVAETMS----SRVHRYYLKGPKQGKSEVFIDG--LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 262 yva~~~~----~~I~~~~~~g~~~~~~~~~~~~--~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|++.... .+|++++.++.. ....+... ..+....+++++||+.++.....
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGNF--NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTTC--CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred EEEEcCCCCcceEEEEEeCCCCC--CcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 8776543 456555544321 11222211 12235678899999866655444
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.033 Score=48.81 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=94.8
Q ss_pred CccEEEe-eCC-eEEEEecCcEEEEEeCC--c--eeEEEecCccccCccccCccCCcceEEECC--CCcEEEEECCCc-E
Q psy4771 64 GPEAVVK-HKG-DLYMGVDGGHILKLSGG--K--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDK--NGALHVADAYFG-L 134 (337)
Q Consensus 64 ~P~~i~~-~~g-~ly~d~~~g~I~~~~~~--~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~--~G~lyVad~~~g-v 134 (337)
.-.++++ .++ .|.+...+|.|..|+.. . ......+. ........+++.+ +++++++-...+ |
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR---------AHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE---------CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec---------cCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3455666 344 56688889988888742 1 12222221 1224467899988 576666544444 7
Q ss_pred EEEEcCCCeE-------EEEeccccccCCCCCCCCCceeeCCC--CCcc----cccceeeeccccCC-------------
Q psy4771 135 YKVNVTTGQT-------EQLISMDTEIDGAKPQIPNSVTVDSD--GQTG----QTEQLISMDTEIDG------------- 188 (337)
Q Consensus 135 ~~vd~~~g~~-------~~l~~~~~~~~g~~~~~P~~v~~~~~--g~~~----~~~~v~~~~~~~~~------------- 188 (337)
...|.++++. ..+.... ...+ .-..++++++ |+++ .++.|...+.....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~-~~~~----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLN-DSKG----SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEEC-CCSS----CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred EEEecCCCcccccccCcceeeeec-ccCC----ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 7777765521 1111100 1111 1344677777 7765 22333333311100
Q ss_pred ------CCCCCCccEEEcCC---CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE---eccccceeeEEEcc
Q psy4771 189 ------AKPQIPNSVTVDSD---GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL---IANLHFANGVELSA 256 (337)
Q Consensus 189 ------~~~~~pn~v~vd~~---G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~---~~~~~~p~gia~~~ 256 (337)
........+++.++ +..+++.. .+|.+..++...++...+ ...-...+.++++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSA--------------LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEE--------------TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEec--------------CCCcEEEEccCCCceeeeeecCCCCcceeEEEECC
Confidence 11223455666654 44332222 233444444444443221 12233567899999
Q ss_pred CCC---EEEEEeCCCCEEEEEEeeC
Q psy4771 257 DES---FVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 257 dg~---~lyva~~~~~~I~~~~~~g 278 (337)
++. .++++-...+.|..+++..
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCC
Confidence 982 4555555667888888864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0028 Score=56.67 Aligned_cols=177 Identities=10% Similarity=0.012 Sum_probs=97.6
Q ss_pred CCeEEEEecCcEEEEEeCCcee-EEEecCccccCccccCccCCcceEE----ECCCCcEEEEECCC-cEEEEEcCCCeEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLV-PVVKLGKDCYGFKYEQQCGRPLGIK----FDKNGALHVADAYF-GLYKVNVTTGQTE 145 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~P~Gl~----~d~~G~lyVad~~~-gv~~vd~~~g~~~ 145 (337)
+..+++...++.|..|+..... .+..+.... .........++ ++++++++++-... .|..+|..+++..
T Consensus 129 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (357)
T 3i2n_A 129 APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ-----GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR 203 (357)
T ss_dssp CCEEEEEETTSCEEEECTTSCSSCSEEECCCT-----TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE
T ss_pred ccEEEEEeCCCeEEEEeCCCCCCcceeccccC-----CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee
Confidence 3456688888888888863221 111111100 01112344565 67788666654444 4888898877764
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC---CCcEEEEcCCCCccCceeeee
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS---DGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~---~G~lyvtd~~~~~~~~~~~~~ 222 (337)
.... . ....+.+++++ +|..+++-..
T Consensus 204 ~~~~----~------------------------------------~~~v~~~~~~~~~~~~~~l~~~~~----------- 232 (357)
T 3i2n_A 204 WETN----I------------------------------------KNGVCSLEFDRKDISMNKLVATSL----------- 232 (357)
T ss_dssp EEEE----C------------------------------------SSCEEEEEESCSSSSCCEEEEEES-----------
T ss_pred eecC----C------------------------------------CCceEEEEcCCCCCCCCEEEEECC-----------
Confidence 4332 1 12357888888 7764444322
Q ss_pred ecCCccEEEEcCCCCeeE------EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC--------------
Q psy4771 223 TSGSGRLIQYNPKTKKNK------VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG-------------- 282 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~------~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~-------------- 282 (337)
+|.|..+|..+++.. .....-.....++++|+++.++++-...+.|..+++......
T Consensus 233 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~ 309 (357)
T 3i2n_A 233 ---EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG 309 (357)
T ss_dssp ---TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred ---CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence 345666665433211 111334456889999999756666667789999998642111
Q ss_pred ---ceeeeecCCCCCCCceeECCCCCEEE
Q psy4771 283 ---KSEVFIDGLPGLPDNVKRDSKGNFLV 308 (337)
Q Consensus 283 ---~~~~~~~~~~g~Pdgi~~d~dG~l~v 308 (337)
....+.. ..+....++++++|.+.+
T Consensus 310 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 310 SVSLLQNVTL-STQPISSLDWSPDKRGLC 337 (357)
T ss_dssp EEEEEEEEEC-CSSCEEEEEECSSSTTEE
T ss_pred ccceeecccc-CCCCeeEEEEcCCCCeEE
Confidence 0111111 223356788899987554
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.011 Score=54.84 Aligned_cols=168 Identities=8% Similarity=-0.026 Sum_probs=91.3
Q ss_pred CccEEEe-eCCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEE
Q psy4771 64 GPEAVVK-HKGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVN 138 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd 138 (337)
.-.++++ .++.++ ++ .++.|..|+.. ....+..+.... .. ..........++++++| +++++-...+ |..+|
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKP-AN-MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC-SS-GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccc-cc-ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 3456777 455555 66 79999999875 222222110000 00 01223457799999998 7766654444 88888
Q ss_pred cCCCeE-----EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 139 VTTGQT-----EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 139 ~~~g~~-----~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
..+++. ..+... .... .. .. +. ......+.++++++|++.++-..
T Consensus 256 ~~~~~~~~~~~~~~~~~---~~~~------~~--------------~~----~~-~~~~~v~~~~~s~~g~~l~~~~~-- 305 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEP---EDPS------NR--------------SF----FS-EIISSISDVKFSHSGRYMMTRDY-- 305 (447)
T ss_dssp TTTCSSSCTTCEEECCC--------------C--------------CH----HH-HHTTCEEEEEECTTSSEEEEEES--
T ss_pred CcCCccccceeeEeccC---CCcc------cc--------------cc----cc-ccCceEEEEEECCCCCEEEEeeC--
Confidence 776653 332210 0000 00 00 00 00124688999999886554322
Q ss_pred ccCceeeeeecCCccEEEEcCCC-CeeEEEeccccc----------------eeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKT-KKNKVLIANLHF----------------ANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~-~~~~~~~~~~~~----------------p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
|.|..+|..+ ++......+... ...+++++|++.| ++-...+.|..+++
T Consensus 306 -------------~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 306 -------------LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDR 371 (447)
T ss_dssp -------------SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEET
T ss_pred -------------CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEc
Confidence 4777777664 432211211111 1238999999866 55666789999987
Q ss_pred eC
Q psy4771 277 KG 278 (337)
Q Consensus 277 ~g 278 (337)
..
T Consensus 372 ~~ 373 (447)
T 3dw8_B 372 NT 373 (447)
T ss_dssp TT
T ss_pred CC
Confidence 64
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.015 Score=51.83 Aligned_cols=94 Identities=9% Similarity=-0.032 Sum_probs=55.0
Q ss_pred CccEEEe-eC----CeEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EE
Q psy4771 64 GPEAVVK-HK----GDLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LY 135 (337)
Q Consensus 64 ~P~~i~~-~~----g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~ 135 (337)
.-.++++ .+ ..|++...+|.|..|+.. .......+. ........+++.++|+.+++-...+ |.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ---------MHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE---------ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec---------cccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 3456666 33 345588889988888752 221111111 1224567999999996555544444 88
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceee--CCCCCcc
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV--DSDGQTG 174 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~--~~~g~~~ 174 (337)
..|.++++...+.. ..+ .-..+++ +++|+++
T Consensus 112 iwd~~~~~~~~~~~----~~~----~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQ----HDA----PVKTIHWIKAPNYSCV 144 (368)
T ss_dssp EEETTTTEEEEEEE----CSS----CEEEEEEEECSSCEEE
T ss_pred EEEcCCCCceeecc----ccC----ceEEEEEEeCCCCCEE
Confidence 88988887666543 111 1234555 6777655
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00052 Score=68.59 Aligned_cols=128 Identities=9% Similarity=0.082 Sum_probs=73.7
Q ss_pred eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEEC---------CCcEEEEE
Q psy4771 71 HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADA---------YFGLYKVN 138 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~---------~~gv~~vd 138 (337)
.++.+.....++.|+.|+. ++...+. .... ........++++|||+ |+++.. ...|+.+|
T Consensus 25 ~dg~~~~~~~d~~i~~~~~~~g~~~~~~--~~~~------~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 25 SGQEYLHQSADNNIVLYNIETGQSYTIL--SNRT------MKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp SSSEEEEECTTSCEEEEESSSCCEEEEE--CHHH------HHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCeEEEEcCCCCEEEEEcCCCcEEEEE--cccc------ccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 3455444446788888886 3333221 1100 0001256899999995 444432 13478888
Q ss_pred cCCCeE---EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCc
Q psy4771 139 VTTGQT---EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKY 214 (337)
Q Consensus 139 ~~~g~~---~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~ 214 (337)
.++++. ..+ ......++++|||+ |.++..
T Consensus 97 ~~~g~~~~~~~l-------------------------------------------~~~~~~~~~SPDG~~la~~~~---- 129 (719)
T 1z68_A 97 LSNGEFVRGNEL-------------------------------------------PRPIQYLCWSPVGSKLAYVYQ---- 129 (719)
T ss_dssp TTTTEECCSSCC-------------------------------------------CSSBCCEEECSSTTCEEEEET----
T ss_pred CCCCccccceec-------------------------------------------CcccccceECCCCCEEEEEEC----
Confidence 877754 111 02256788999986 554432
Q ss_pred cCceeeeeecCCccEEEEcCCCCeeEEEeccc-------------------cceeeEEEccCCCEEEEEe
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-------------------HFANGVELSADESFVIVAE 265 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-------------------~~p~gia~~~dg~~lyva~ 265 (337)
+.|+.+|..+++...+.... ....+++++|||++|+++.
T Consensus 130 ------------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 130 ------------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp ------------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred ------------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 26777777666654432111 1225899999999987765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.013 Score=59.09 Aligned_cols=210 Identities=11% Similarity=0.076 Sum_probs=110.9
Q ss_pred CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC--CcEEEEECCCc-EEEEEcCCCeEEE
Q psy4771 72 KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN--GALHVADAYFG-LYKVNVTTGQTEQ 146 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~--G~lyVad~~~g-v~~vd~~~g~~~~ 146 (337)
+..+.+...+|.|..|+. ++...+..+. ...+...++++.++ |+++++-...| |...|..+++...
T Consensus 21 g~~latg~~dg~I~vwd~~~~~~~~~~~l~---------~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLT---------GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp SCCEEEEETTTEEEEEEEETTEEEEEEEEC---------CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCcEEEEecCCCCCccceecc---------CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence 445668888998888875 2433333331 12244678999877 76665544444 7777877775333
Q ss_pred EeccccccCCCCCCCCCceeeCCC--CCcc----cccceeeeccccCCC--------CCCCCccEEEcCC----------
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSD--GQTG----QTEQLISMDTEIDGA--------KPQIPNSVTVDSD---------- 202 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~--g~~~----~~~~v~~~~~~~~~~--------~~~~pn~v~vd~~---------- 202 (337)
..... ...+ .-..++++++ |+++ .++.|...+...... .......+++++.
T Consensus 92 ~~~~~-~h~~----~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 92 IAVHA-VHSA----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp EEEEC-CCSS----CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred ccccc-CCCC----CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 33211 0111 1245777777 7766 223343333211100 1123455666552
Q ss_pred ---CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe----eE-EEeccccceeeEEEccC---CCEEEEEeCCCCEE
Q psy4771 203 ---GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK----NK-VLIANLHFANGVELSAD---ESFVIVAETMSSRV 271 (337)
Q Consensus 203 ---G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~----~~-~~~~~~~~p~gia~~~d---g~~lyva~~~~~~I 271 (337)
|.+.+ ....+|.|..+|..++. .. .+...-.....++++|+ ++ ++++-...+.|
T Consensus 167 ~~d~~~l~--------------sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I 231 (753)
T 3jro_A 167 TKESRKFV--------------TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTC 231 (753)
T ss_dssp CGGGCCEE--------------EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCE
T ss_pred CCCCCEEE--------------EEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEE
Confidence 33222 23335667666655442 11 12223445688999999 65 55555566789
Q ss_pred EEEEeeCCCCCceeeeec--CCCCCCCceeECCCCCEEEEe
Q psy4771 272 HRYYLKGPKQGKSEVFID--GLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 272 ~~~~~~g~~~~~~~~~~~--~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..+++............. ...+....++++++|.+.++.
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 999986532111111111 123446778899998744443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.02 Score=50.42 Aligned_cols=230 Identities=12% Similarity=0.047 Sum_probs=107.4
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCC--CcEEEEECCCc-EEEEEc
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN--GALHVADAYFG-LYKVNV 139 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~--G~lyVad~~~g-v~~vd~ 139 (337)
++++ .+| .|.+...++.|..|+.. ....+..+. ...+...++++.++ |+++++-+..+ |...|.
T Consensus 14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~---------gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT---------GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC---------CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc---------cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 4555 344 55688889988888752 222222221 12234568998753 76666644444 777787
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCC--CCcc---cc-cceeeeccccCC--------CCCCCCccEEEcCCCcE
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSD--GQTG---QT-EQLISMDTEIDG--------AKPQIPNSVTVDSDGMV 205 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~--g~~~---~~-~~v~~~~~~~~~--------~~~~~pn~v~vd~~G~l 205 (337)
++++...+.... ...+ .-..++++++ |+++ .. +.|...+..... ......+.+++.+++..
T Consensus 85 ~~~~~~~~~~~~-~h~~----~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 85 ENGRWSQIAVHA-VHSA----SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp SSSCBCCCEEEC-CCSS----CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred CCCceEEEEEee-cCCC----ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 765322111100 0011 1234566665 5555 22 233322211100 00122345566654210
Q ss_pred EEEcCCCCccCceeeeeecCCccEEEEcCCCCe----e-EEEeccccceeeEEEccCC--CEEEEEeCCCCEEEEEEeeC
Q psy4771 206 YWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK----N-KVLIANLHFANGVELSADE--SFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 206 yvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~----~-~~~~~~~~~p~gia~~~dg--~~lyva~~~~~~I~~~~~~g 278 (337)
-... .....+....+....+|.|..+|..+++ . ..+...-...+.++++|++ ..++++-...+.|..++++.
T Consensus 160 ~~~~-~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGE-HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccc-CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 0000 0000000011123345566555544432 1 1222334457899999986 45666766778888888864
Q ss_pred CCCC-ceeeee-cCCCCCCCceeECCCCCEEEEec
Q psy4771 279 PKQG-KSEVFI-DGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 279 ~~~~-~~~~~~-~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.... ....+. ...++....+++.++|++.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence 3211 112221 12233345678888887655543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0062 Score=55.61 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=45.1
Q ss_pred EeeCCeEEEEecCcEEEEEeCCceeEE--EecCccccCccccCccCCc-ceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSGGKLVPV--VKLGKDCYGFKYEQQCGRP-LGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~P-~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
++.++.+|+...++.|+.++..+.+.. ...+.... ......... ..+.+ .+|++|++.....|+.+|.++|+..
T Consensus 50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 50 ALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG--WFSKEPALLSGGVTV-SGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCSCCCCCEEEEEEE-ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEECCEEEEEcCCCeEEEEEccCCceeeeecCccccc--cccccCcccccCceE-eCCEEEEEcCCCEEEEEECCCCCEE
Confidence 457899998888899999997332222 11211000 000001112 23444 4679999976566999999988876
Q ss_pred EEe
Q psy4771 146 QLI 148 (337)
Q Consensus 146 ~l~ 148 (337)
.-.
T Consensus 127 W~~ 129 (376)
T 3q7m_A 127 WQT 129 (376)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0064 Score=55.65 Aligned_cols=193 Identities=9% Similarity=0.075 Sum_probs=107.8
Q ss_pred ccEEEe-e--CCeEEEEecCcEEEEEeCCcee------EEEecCccccCccccCccCCcceEEECCC-CcEEEEECCCc-
Q psy4771 65 PEAVVK-H--KGDLYMGVDGGHILKLSGGKLV------PVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYFG- 133 (337)
Q Consensus 65 P~~i~~-~--~g~ly~d~~~g~I~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~g- 133 (337)
-.++++ . +..+++...++.|..|+..... ....... .........++++.++ ++++++-...+
T Consensus 116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (416)
T 2pm9_A 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ------SMSSVDEVISLAWNQSLAHVFASAGSSNF 189 (416)
T ss_dssp CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC------SCCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc------ccCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence 345666 2 3455688888888888763221 1101100 0122345679999999 57777654444
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSST 212 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~ 212 (337)
|..+|.++++............+ .-...+.++++++| .++++....
T Consensus 190 v~iwd~~~~~~~~~~~~~~~~~~---------------------------------~~~~v~~~~~~~~~~~~l~~~~~d 236 (416)
T 2pm9_A 190 ASIWDLKAKKEVIHLSYTSPNSG---------------------------------IKQQLSVVEWHPKNSTRVATATGS 236 (416)
T ss_dssp EEEEETTTTEEEEEECCCCCSSC---------------------------------CCCCEEEEEECSSCTTEEEEEECC
T ss_pred EEEEECCCCCcceEEeccccccc---------------------------------cCCceEEEEECCCCCCEEEEEECC
Confidence 88889887765444321000000 02346889999987 455444321
Q ss_pred CccCceeeeeecCCccEEEEcCCCC-ee-EEEe-ccccceeeEEEcc-CCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPKTK-KN-KVLI-ANLHFANGVELSA-DESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~~~-~~-~~~~-~~~~~p~gia~~~-dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
. ..+.|..+|..++ +. ..+. ..-.....++++| +++.|+.+ ...+.|..+++...+ ....+.
T Consensus 237 ~-----------~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~-~~dg~v~~wd~~~~~--~~~~~~ 302 (416)
T 2pm9_A 237 D-----------NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS-GRDNTVLLWNPESAE--QLSQFP 302 (416)
T ss_dssp S-----------SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE-ESSSEEEEECSSSCC--EEEEEE
T ss_pred C-----------CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE-eCCCCEEEeeCCCCc--cceeec
Confidence 0 1126667776654 22 2222 2344568899999 77655544 456789888875432 122222
Q ss_pred cCCCCCCCceeECCCC-CEEEEec
Q psy4771 289 DGLPGLPDNVKRDSKG-NFLVSLV 311 (337)
Q Consensus 289 ~~~~g~Pdgi~~d~dG-~l~va~~ 311 (337)
. ..+....+++.++| .++++..
T Consensus 303 ~-~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 303 A-RGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp C-SSSCCCCEEECTTCTTEEEECC
T ss_pred C-CCCceEEEEECCCCCCEEEEEe
Confidence 2 23446788888888 5655544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.49 E-value=0.03 Score=50.31 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=56.9
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCC-CCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
..+.++++++|+..++-.. +|.|..+|.. .+............+.++++|++..+.++. .+.|
T Consensus 215 ~v~~~~~s~~g~~l~sgs~--------------dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~--d~~v 278 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGK--------------DKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT--DQGV 278 (343)
T ss_dssp CEEEEEECTTSSEEEEEET--------------TCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE--SSCE
T ss_pred cceEEEECCCCCEEEEEcC--------------CCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC--CCCE
Confidence 3678999999986655432 4577777763 222222222233468999999997665554 4567
Q ss_pred EEEEeeCCCCCceeeeec----------CCCCCCCceeECCCCCEEEE
Q psy4771 272 HRYYLKGPKQGKSEVFID----------GLPGLPDNVKRDSKGNFLVS 309 (337)
Q Consensus 272 ~~~~~~g~~~~~~~~~~~----------~~~g~Pdgi~~d~dG~l~va 309 (337)
..+++..........+.. +..+....++++++|.+.++
T Consensus 279 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 279 KIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp EEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred EEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 778775432211111110 11122346888898874443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0083 Score=54.57 Aligned_cols=151 Identities=6% Similarity=-0.001 Sum_probs=92.9
Q ss_pred cEEEe-e-C-CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCC
Q psy4771 66 EAVVK-H-K-GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~-~-g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~ 141 (337)
.++++ . + ..+++...++.|..|+..+.. +..+... .........+++.++|+.+++-... .|..+|..+
T Consensus 122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 194 (383)
T 3ei3_B 122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVFAKT------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG 194 (383)
T ss_dssp EEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEEECC------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred eEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEEecc------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence 45556 3 3 355588889989888863211 1111100 0112446789999999665554444 488888865
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~ 220 (337)
..+..+.. ......+++++++|. ++++...
T Consensus 195 ~~~~~~~~----------------------------------------h~~~v~~~~~~~~~~~~l~s~~~--------- 225 (383)
T 3ei3_B 195 HEIFKEKL----------------------------------------HKAKVTHAEFNPRCDWLMATSSV--------- 225 (383)
T ss_dssp CEEEEEEC----------------------------------------SSSCEEEEEECSSCTTEEEEEET---------
T ss_pred CEEEEecc----------------------------------------CCCcEEEEEECCCCCCEEEEEeC---------
Confidence 54444432 123468899999887 6655433
Q ss_pred eeecCCccEEEEcCCC----CeeEEEeccccceeeEEEcc-CCCEEEEEeCCCCEEEEEEeeC
Q psy4771 221 GLTSGSGRLIQYNPKT----KKNKVLIANLHFANGVELSA-DESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~----~~~~~~~~~~~~p~gia~~~-dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..+ ++.......-.....+++++ +++.|+++. ..+.|..+++..
T Consensus 226 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~ 282 (383)
T 3ei3_B 226 -----DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYD 282 (383)
T ss_dssp -----TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEETTB
T ss_pred -----CCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEECCC
Confidence 34667777654 33333334455678999999 998666555 467999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0083 Score=54.50 Aligned_cols=141 Identities=7% Similarity=0.029 Sum_probs=85.9
Q ss_pred CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccc
Q psy4771 73 GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~ 151 (337)
..+++...++.|..|+......+..+. .......++++.++|+++++-...+ |..+|..+++.......
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~---------~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~- 280 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFE---------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK- 280 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEec---------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-
Confidence 356688888888888863333232221 1224467899999997766654444 78888776643333210
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
.. .......++++++|.+.++... +|.|..
T Consensus 281 ---~~---------------------------------~~~~~~~~~~s~~g~~l~~g~~--------------d~~i~v 310 (354)
T 2pbi_B 281 ---ES---------------------------------IIFGASSVDFSLSGRLLFAGYN--------------DYTINV 310 (354)
T ss_dssp ---TT---------------------------------CCSCEEEEEECTTSSEEEEEET--------------TSCEEE
T ss_pred ---CC---------------------------------cccceeEEEEeCCCCEEEEEEC--------------CCcEEE
Confidence 00 1223567889999886655432 457888
Q ss_pred EcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 232 YNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 232 ~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
+|..+++.. .+...-.....++++|||+.|..+. ..+.|..+
T Consensus 311 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs-~D~~v~vW 353 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS-WDHTLRVW 353 (354)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSEEEEE
T ss_pred EECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc-CCCCEEec
Confidence 887666533 3333445668999999998655544 44565543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.015 Score=57.82 Aligned_cols=184 Identities=14% Similarity=0.052 Sum_probs=105.6
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCC
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g 142 (337)
.++++ .++ .|.+...++.|..|+.........+. .......+++++++|+.+++-+.. .|...|..+.
T Consensus 434 ~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe---------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence 45566 344 45588889999999864333222221 122446789999999655554444 4777776544
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC--cEEEEcCCCCccCceee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG--MVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G--~lyvtd~~~~~~~~~~~ 220 (337)
....+... ..+ .....+.+++.+++ ...++-.
T Consensus 505 ~~~~~~~~---~~~---------------------------------h~~~v~~~~~~~~~~~~~l~s~s---------- 538 (694)
T 3dm0_A 505 CKYTISEG---GEG---------------------------------HRDWVSCVRFSPNTLQPTIVSAS---------- 538 (694)
T ss_dssp EEEEECSS---TTS---------------------------------CSSCEEEEEECSCSSSCEEEEEE----------
T ss_pred cceeeccC---CCC---------------------------------CCCcEEEEEEeCCCCcceEEEEe----------
Confidence 33333210 011 12235678888775 2333332
Q ss_pred eeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCcee
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~ 299 (337)
.+|.|..+|..+++...... +....+.++++||++.|.. -...+.|..+++...+ .+..-........++
T Consensus 539 ----~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s-g~~Dg~i~iwd~~~~~----~~~~~~~~~~v~~~~ 609 (694)
T 3dm0_A 539 ----WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS-GGKDGVVLLWDLAEGK----KLYSLEANSVIHALC 609 (694)
T ss_dssp ----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSBCEEEETTTTE----EEECCBCSSCEEEEE
T ss_pred ----CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCc----eEEEecCCCcEEEEE
Confidence 24577788877766544333 3445689999999975554 4456788888875321 111111123356778
Q ss_pred ECCCCCEEEEecCC
Q psy4771 300 RDSKGNFLVSLVCP 313 (337)
Q Consensus 300 ~d~dG~l~va~~~~ 313 (337)
+.++|.+.++....
T Consensus 610 ~sp~~~~l~~~~~~ 623 (694)
T 3dm0_A 610 FSPNRYWLCAATEH 623 (694)
T ss_dssp ECSSSSEEEEEETT
T ss_pred EcCCCcEEEEEcCC
Confidence 88888766655433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.008 Score=58.05 Aligned_cols=185 Identities=11% Similarity=0.053 Sum_probs=101.7
Q ss_pred ccEEEe-eCCe-EEEEecCcEEEEEeCCce----eEEEecCccccCccccCccCC-cceEEECC--CCcEEEEECCCc-E
Q psy4771 65 PEAVVK-HKGD-LYMGVDGGHILKLSGGKL----VPVVKLGKDCYGFKYEQQCGR-PLGIKFDK--NGALHVADAYFG-L 134 (337)
Q Consensus 65 P~~i~~-~~g~-ly~d~~~g~I~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~-P~Gl~~d~--~G~lyVad~~~g-v 134 (337)
+.++++ .++. +.+.. ++.|..|+..+. .....+. ..... ...+++.+ +|+++++-...+ |
T Consensus 21 v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~---------~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFT---------GHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp CCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEEC---------TTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred eeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEe---------cCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 344555 3444 44443 777888876322 2222221 22244 68999999 996655543444 6
Q ss_pred EEEEcCCC------eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEE
Q psy4771 135 YKVNVTTG------QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWS 208 (337)
Q Consensus 135 ~~vd~~~g------~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvt 208 (337)
...|..++ ....+.. ..+ .-.....++++++|+..++
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~----~~~---------------------------------~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSE----FQV---------------------------------LAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEE----EEC---------------------------------CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCcccccccccccch----hhc---------------------------------ccccEEEEEEeCCCCEEEE
Confidence 66666433 2222211 000 1234688999999974443
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
-.... +..|.|+.+|. ......+...-.....++++++++.++++-...+.|..+++...+ ....+.
T Consensus 134 ~~~~~----------~~~~~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~ 200 (615)
T 1pgu_A 134 VGEGR----------DNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDR 200 (615)
T ss_dssp EECCS----------SCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEEC
T ss_pred eccCC----------CCccEEEEEEC-CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeec
Confidence 32211 12357777773 233334444455678999999998566666667899998864321 112222
Q ss_pred cCCCC---CCCceeECCC-CCEEEEe
Q psy4771 289 DGLPG---LPDNVKRDSK-GNFLVSL 310 (337)
Q Consensus 289 ~~~~g---~Pdgi~~d~d-G~l~va~ 310 (337)
. ..+ ....+++.++ |++.++.
T Consensus 201 ~-~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 201 T-HHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp S-SSCTTCCEEEEEECSTTCCEEEEE
T ss_pred c-cCCCCceEEEEEECCCCCCEEEEE
Confidence 1 122 3457888888 8755543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.012 Score=53.48 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=89.0
Q ss_pred cEEEe-e-CC-eEEEEecCcEEEEEeCCcee--EEEecCcccc-C-ccccCccCCcceEEECC-CCcEEEEECCC-cEEE
Q psy4771 66 EAVVK-H-KG-DLYMGVDGGHILKLSGGKLV--PVVKLGKDCY-G-FKYEQQCGRPLGIKFDK-NGALHVADAYF-GLYK 136 (337)
Q Consensus 66 ~~i~~-~-~g-~ly~d~~~g~I~~~~~~~~~--~~~~~g~~~~-~-~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-gv~~ 136 (337)
.++++ . ++ .+++...+|.|..|+..+.. ........+. . ............+++.+ +++++++-... .|..
T Consensus 47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 126 (408)
T 4a11_B 47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126 (408)
T ss_dssp EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence 45555 3 44 45588889989888763211 1000000000 0 00001334567899999 55555554334 4888
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC---CCcEEEEcCCCC
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS---DGMVYWSDSSTK 213 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~---~G~lyvtd~~~~ 213 (337)
.|..+++....... ......+.+.+ ++.+.++.
T Consensus 127 wd~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~---- 162 (408)
T 4a11_B 127 WDTNTLQTADVFNF----------------------------------------EETVYSHHMSPVSTKHCLVAVG---- 162 (408)
T ss_dssp EETTTTEEEEEEEC----------------------------------------SSCEEEEEECSSCSSCCEEEEE----
T ss_pred eeCCCCccceeccC----------------------------------------CCceeeeEeecCCCCCcEEEEE----
Confidence 88887765554421 11134444544 23333222
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
..+|.|..+|..+++...... .-.....++++|+++.++++-...+.|..+++..
T Consensus 163 ----------~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 163 ----------TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp ----------ESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred ----------cCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 234678888877665433333 3445688999999987666666678899998853
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0023 Score=58.44 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=57.4
Q ss_pred cEEEEcCCCCeeEEEe-------ccccceeeEEE--ccC-CC-EEEEEeCCCCEEEEEEeeCCCCC--c---eeeeecCC
Q psy4771 228 RLIQYNPKTKKNKVLI-------ANLHFANGVEL--SAD-ES-FVIVAETMSSRVHRYYLKGPKQG--K---SEVFIDGL 291 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~-------~~~~~p~gia~--~~d-g~-~lyva~~~~~~I~~~~~~g~~~~--~---~~~~~~~~ 291 (337)
++|.+||++++++.+. ..+..|.|+|+ +++ ++ ++||++.. +++..|++.....+ . .+.|. +
T Consensus 102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~--l 178 (355)
T 3amr_A 102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFK--M 178 (355)
T ss_dssp EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEE--C
T ss_pred EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEec--C
Confidence 5677798888766552 33578999999 764 43 57888766 79999888532222 1 12222 5
Q ss_pred CCCCCceeECCC-CCEEEEecCC
Q psy4771 292 PGLPDNVKRDSK-GNFLVSLVCP 313 (337)
Q Consensus 292 ~g~Pdgi~~d~d-G~l~va~~~~ 313 (337)
++.|.|+++|++ |.|||+.-..
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~ 201 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDE 201 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCcceEEEcCCCCeEEEecccc
Confidence 677999999964 7799998655
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.023 Score=55.62 Aligned_cols=224 Identities=13% Similarity=0.129 Sum_probs=108.5
Q ss_pred cEEEe-eCC--eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 66 EAVVK-HKG--DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g--~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
.++++ .++ .+.+...++.|..|+....+....+. ........++|.++|+++++-...+ |...|..+
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~---------~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec---------cccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 45566 343 35688889988888864333333332 1224577999999998777654444 88888776
Q ss_pred CeEEEEeccc-cccCCCCCCCCCceeeCCCCCcc---ccc-ceeeeccccCCCCCCCCccEEEcC--CCcEEEEcCCCCc
Q psy4771 142 GQTEQLISMD-TEIDGAKPQIPNSVTVDSDGQTG---QTE-QLISMDTEIDGAKPQIPNSVTVDS--DGMVYWSDSSTKY 214 (337)
Q Consensus 142 g~~~~l~~~~-~~~~g~~~~~P~~v~~~~~g~~~---~~~-~v~~~~~~~~~~~~~~pn~v~vd~--~G~lyvtd~~~~~ 214 (337)
++........ ....+.. -....++++++|+++ +.+ .|...+.. .+. ...-+.... ....+-......
T Consensus 222 g~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l~s~s~D~~v~lWd~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~- 295 (611)
T 1nr0_A 222 GTKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASASADKTIKIWNVA-TLK---VEKTIPVGTRIEDQQLGIIWTKQ- 295 (611)
T ss_dssp CCEEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEETTSEEEEEETT-TTE---EEEEEECCSSGGGCEEEEEECSS-
T ss_pred CcEeeeeccccccccccC-CCEEEEEECCCCCEEEEEeCCCeEEEEeCC-CCc---eeeeecCCCCccceeEEEEEcCC-
Confidence 6544332100 0000100 012235555555544 112 22211100 000 000000000 000000000000
Q ss_pred cCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g 293 (337)
..+....+|.+..+|+.+++..... ........++++|||+.|+.+. ..++|..+++..... ...+......
T Consensus 296 ----~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~--~~~~~~~h~~ 368 (611)
T 1nr0_A 296 ----ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGIS--NRVFPDVHAT 368 (611)
T ss_dssp ----CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCE--EECSSCSCSS
T ss_pred ----EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCce--eeecccCCcc
Confidence 1122345667777887776543333 3344568999999998776665 456888888754321 1111121222
Q ss_pred CCCceeECCCCCEEEEec
Q psy4771 294 LPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 294 ~Pdgi~~d~dG~l~va~~ 311 (337)
....+++.++|.+..+..
T Consensus 369 ~v~~~~~s~~~~l~s~s~ 386 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSW 386 (611)
T ss_dssp CEEEEEECTTSCEEEEET
T ss_pred eEEEEEECCCCcEEEEEc
Confidence 345667776666665544
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0062 Score=54.31 Aligned_cols=173 Identities=9% Similarity=0.036 Sum_probs=95.3
Q ss_pred CeEEEEecCcEEEEEeCCcee-EEEecCccccCccccCccCCcceE------EECCCCcEEEEECCC-cEEEEEcCCCe-
Q psy4771 73 GDLYMGVDGGHILKLSGGKLV-PVVKLGKDCYGFKYEQQCGRPLGI------KFDKNGALHVADAYF-GLYKVNVTTGQ- 143 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~P~Gl------~~d~~G~lyVad~~~-gv~~vd~~~g~- 143 (337)
..+++...++.|..|+..... .+..+. ........+ +++++|+++++-... .|..+|..+++
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVK---------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEEC---------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEE---------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 556688889989988863221 111121 111234455 456788555554444 47778876553
Q ss_pred -EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEE----EcCCCcEEEEcCCCCccCce
Q psy4771 144 -TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVT----VDSDGMVYWSDSSTKYKSGL 218 (337)
Q Consensus 144 -~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~----vd~~G~lyvtd~~~~~~~~~ 218 (337)
+..+.. ..+. .......++ ++++|++.++..
T Consensus 152 ~~~~~~~----~~~~--------------------------------~~~~v~~~~~~~~~~~~~~~l~~~~-------- 187 (357)
T 3i2n_A 152 PVANMEP----VQGE--------------------------------NKRDCWTVAFGNAYNQEERVVCAGY-------- 187 (357)
T ss_dssp CSEEECC----CTTS--------------------------------CCCCEEEEEEECCCC-CCCEEEEEE--------
T ss_pred cceeccc----cCCC--------------------------------CCCceEEEEEEeccCCCCCEEEEEc--------
Confidence 222221 1110 112334555 556776544432
Q ss_pred eeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEcc---CCCEEEEEeCCCCEEEEEEeeCCCCCceeee--ecCCCC
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA---DESFVIVAETMSSRVHRYYLKGPKQGKSEVF--IDGLPG 293 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~---dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~--~~~~~g 293 (337)
.+|.|..+|..+++.......-.....++++| +++.|+++. ..+.|..+++..........+ .....+
T Consensus 188 ------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 188 ------DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp ------TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE-STTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred ------cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC-CCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 24688888988887655544455678999999 887776664 567899999864322111110 011223
Q ss_pred CCCceeECCCCC
Q psy4771 294 LPDNVKRDSKGN 305 (337)
Q Consensus 294 ~Pdgi~~d~dG~ 305 (337)
....+++.++|.
T Consensus 261 ~v~~~~~~~~~~ 272 (357)
T 3i2n_A 261 TVWQVRHLPQNR 272 (357)
T ss_dssp CEEEEEEETTEE
T ss_pred CEEEEEECCCCC
Confidence 356677777776
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0064 Score=54.68 Aligned_cols=146 Identities=9% Similarity=-0.031 Sum_probs=87.8
Q ss_pred CcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 113 RPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
....++++++|+++++-... .|..+|.++++...+... .+ .-
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~----~~---------------------------------h~ 52 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL----KE---------------------------------HN 52 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE----EC---------------------------------CS
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee----cC---------------------------------CC
Confidence 35689999999766665444 477788877753222210 11 12
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE---eccccceeeEEEccCCCEEEEEeCCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL---IANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~---~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
...++++++++|++.++-.. +|.|..+|..+++.... ...-.....++++++++.|+++.. .
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~--------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 117 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGT--------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-S 117 (372)
T ss_dssp SCEEEEEEETTTTEEEEEET--------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-T
T ss_pred CcccEEEEeCCCCEEEEEcC--------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-C
Confidence 24688999999875554332 34666677666653222 223445789999999987777664 5
Q ss_pred CEEEEEEeeCCCCCc-eeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 269 SRVHRYYLKGPKQGK-SEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~-~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
+.|..++++...... ...+..........+++.++|+++++.
T Consensus 118 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 118 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence 678888887542111 122222223345678888888755544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.44 E-value=0.034 Score=55.80 Aligned_cols=194 Identities=9% Similarity=0.054 Sum_probs=100.0
Q ss_pred eCCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECC---------CcEEEE
Q psy4771 71 HKGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAY---------FGLYKV 137 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~---------~gv~~v 137 (337)
.++.++ ++ ++.|..|+. ++...+.. +... ........++.++|||+ |+++... ..++.+
T Consensus 26 ~dg~~~~~~--~~~i~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 26 SDHEYLYKQ--ENNILVFNAEYGNSSVFLE-NSTF-----DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp SSSEEEEEE--TTEEEEEETTTCCEEEEEC-TTTT-----TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCcEEEEc--CCcEEEEECCCCceEEEEe-chhh-----hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 355544 55 889999986 33332211 1110 01111234689999995 4444321 126789
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cccceeeecccc--------CCCC----------------
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTEQLISMDTEI--------DGAK---------------- 190 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~~v~~~~~~~--------~~~~---------------- 190 (337)
|.++++.+.+... .+. -...+.+|||+.+ ....|...+... ++..
T Consensus 98 d~~~~~~~~l~~~----~~~----~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 98 DLNKRQLITEERI----PNN----TQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp ETTTTEECCSSCC----CTT----EEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred ECCCCcEEEcccC----CCc----ceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 9998887665421 111 1346678888876 223343333110 0100
Q ss_pred CCCCccEEEcCCCc-EEEEcC-CCCccC--------------ceeeee------ecCCccEEEEcCCC---C---eeEEE
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDS-STKYKS--------------GLFEGL------TSGSGRLIQYNPKT---K---KNKVL 242 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~-~~~~~~--------------~~~~~~------~~~~G~v~~~d~~~---~---~~~~~ 242 (337)
+.....++++|||+ |.++.. ....+. ....+. ......|+.+|.++ + +...+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 12234588999997 555421 110000 000010 11223789999988 7 44444
Q ss_pred ec------cccceeeEEEccCCCEEE-EEeCCC--CEEEEEEeeCCC
Q psy4771 243 IA------NLHFANGVELSADESFVI-VAETMS--SRVHRYYLKGPK 280 (337)
Q Consensus 243 ~~------~~~~p~gia~~~dg~~ly-va~~~~--~~I~~~~~~g~~ 280 (337)
.. .-.....++++|||+.++ +..... ..|+.+++++++
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 32 233456789999997443 334333 368888887653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.44 E-value=0.053 Score=47.79 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=62.6
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
..+.++++++|++.++-.. +|.|..+|..+++.......-.....+++++++..+..+. .+.|.
T Consensus 217 ~v~~~~~s~~~~~l~s~s~--------------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~ 280 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGK--------------DGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT--GPSIK 280 (340)
T ss_dssp CEEEEEECTTSSEEEEEET--------------TCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE--TTEEE
T ss_pred cEEEEEECCCCCEEEEEeC--------------CCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC--CCEEE
Confidence 3578999999986655432 4578888887776555555555678899999886444443 57888
Q ss_pred EEEeeCCCCCc---eee---eecCCCCCCCceeECCCCCEEEEe
Q psy4771 273 RYYLKGPKQGK---SEV---FIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 273 ~~~~~g~~~~~---~~~---~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
.+++++..... ... .....++....++++++|++.++.
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 88875431100 000 001112234567889999866654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0029 Score=57.42 Aligned_cols=185 Identities=8% Similarity=-0.057 Sum_probs=96.3
Q ss_pred ccEEEe-eC-CeEEEEecCcEEEEEeCCcee---EEEecCccccCccccCccCCcceEEECCCCcE-EEEECCCcEEEEE
Q psy4771 65 PEAVVK-HK-GDLYMGVDGGHILKLSGGKLV---PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGAL-HVADAYFGLYKVN 138 (337)
Q Consensus 65 P~~i~~-~~-g~ly~d~~~g~I~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~l-yVad~~~gv~~vd 138 (337)
-.++++ .+ ..|.+...++.|..|+..... ....+. ........+++.++|++ +.+.....|...|
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 128 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL---------RLNRAATFVRWSPNEDKFAVGSGARVISVCY 128 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC---------CCSSCEEEEECCTTSSCCEEEESSSCEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec---------ccCCceEEEEECCCCCEEEEEecCCeEEEEE
Confidence 345666 34 456688888988888753221 222221 22245678999999854 4444334477767
Q ss_pred cCCCe----EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCc
Q psy4771 139 VTTGQ----TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY 214 (337)
Q Consensus 139 ~~~g~----~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~ 214 (337)
.++++ ...+.. ..-...+.+++.++|.+.++-..
T Consensus 129 ~~~~~~~~~~~~~~~---------------------------------------~h~~~v~~~~~~~~~~~l~~~~~--- 166 (377)
T 3dwl_C 129 FEQENDWWVSKHLKR---------------------------------------PLRSTILSLDWHPNNVLLAAGCA--- 166 (377)
T ss_dssp C-----CCCCEEECS---------------------------------------SCCSCEEEEEECTTSSEEEEEES---
T ss_pred ECCcccceeeeEeec---------------------------------------ccCCCeEEEEEcCCCCEEEEEeC---
Confidence 66553 222211 01234678888888875544332
Q ss_pred cCceeeeeecCCccEEEEcCCC------------------CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKT------------------KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~------------------~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
+|.|..+|... ++.............++++||++.|+.+. ..+.|..+++
T Consensus 167 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~ 234 (377)
T 3dwl_C 167 -----------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYP 234 (377)
T ss_dssp -----------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEE
T ss_pred -----------CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe-CCCcEEEEEC
Confidence 23455555321 11111112333467899999998666554 4678999998
Q ss_pred eCCCCCc--eeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 277 KGPKQGK--SEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 277 ~g~~~~~--~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
....... ...+.. ..+....+++.++|++.++....
T Consensus 235 ~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 235 SAPEQPPRALITVKL-SQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp CSTTSCEEECCCEEC-SSSCEEEEEEEETTEEEEEESSS
T ss_pred CCCCCcceeeEeecC-CCCceEEEEEcCCCCEEEEEcCC
Confidence 7543210 111111 22234678888888766665433
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0056 Score=60.13 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=100.7
Q ss_pred CccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 64 GPEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 64 ~P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
.|..+++ .+| .|.+.. ++.|..++..+......+. ........++|+|+|+++++-...+ |...|..
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~---------~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT---------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 89 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEec---------CCCCceEEEEECCCCcEEEEEeCCCCEEEeECC
Confidence 3445555 344 444443 4577777753221111121 1223467899999997766654444 7777765
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceee
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~ 220 (337)
+++...... ..+ --...++++++++|...++-...+
T Consensus 90 ~~~~~~~~~----~~~---------------------------------~~~~v~~v~fs~dg~~l~~~~~~~------- 125 (611)
T 1nr0_A 90 QTTHILKTT----IPV---------------------------------FSGPVKDISWDSESKRIAAVGEGR------- 125 (611)
T ss_dssp STTCCEEEE----EEC---------------------------------SSSCEEEEEECTTSCEEEEEECCS-------
T ss_pred CCcceeeEe----ecc---------------------------------cCCceEEEEECCCCCEEEEEECCC-------
Confidence 432111110 000 012368899999998544332211
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
+..|.|+.+|.. .....+...-...+.++++|++...+++-...+.|..++....+ ....+. +..+....+++
T Consensus 126 ---~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~-~H~~~V~~v~f 198 (611)
T 1nr0_A 126 ---ERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFG-EHTKFVHSVRY 198 (611)
T ss_dssp ---SCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEEC-CCSSCEEEEEE
T ss_pred ---CceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--Eeeeec-cccCceEEEEE
Confidence 113467777632 22222333344678999999987666776677888888753211 112222 22233567888
Q ss_pred CCCCCEEEEec
Q psy4771 301 DSKGNFLVSLV 311 (337)
Q Consensus 301 d~dG~l~va~~ 311 (337)
.++|++.++..
T Consensus 199 spdg~~las~s 209 (611)
T 1nr0_A 199 NPDGSLFASTG 209 (611)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 88888666544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.065 Score=47.19 Aligned_cols=176 Identities=11% Similarity=-0.006 Sum_probs=96.1
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC-eEEEEec
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG-QTEQLIS 149 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g-~~~~l~~ 149 (337)
+..+.+...++.|..|+..+...+..+. ........+++.+++.++++-...+ |...|.+++ .......
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFE---------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEe---------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 4556688999999999874333332221 1224467899999997666654444 777887655 3332221
Q ss_pred cccccCCCCCCCCCceeeCC-CCCcc----cccceeeeccccCCC-------CCCCCccEEEcC--CCcEEEEcCCCCcc
Q psy4771 150 MDTEIDGAKPQIPNSVTVDS-DGQTG----QTEQLISMDTEIDGA-------KPQIPNSVTVDS--DGMVYWSDSSTKYK 215 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~-~g~~~----~~~~v~~~~~~~~~~-------~~~~pn~v~vd~--~G~lyvtd~~~~~~ 215 (337)
. ..+ .-..+++++ +++++ .++.|...+...... .....+.+.+.+ ++.+.++
T Consensus 138 ~---h~~----~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s------- 203 (304)
T 2ynn_A 138 G---HEH----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT------- 203 (304)
T ss_dssp C---CCS----CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE-------
T ss_pred c---cCC----cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE-------
Confidence 0 111 123466776 45544 223333332110000 001122233332 2332222
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
...+|.|..+|..+++..... ........++++|+++. +++-...+.|..++...
T Consensus 204 -------~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 204 -------ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGTLKIWNSST 259 (304)
T ss_dssp -------EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTT
T ss_pred -------EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE-EEEEcCCCeEEEEECCC
Confidence 334678888888877654333 33455678999999974 44555567888888654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.015 Score=52.18 Aligned_cols=179 Identities=11% Similarity=0.043 Sum_probs=97.0
Q ss_pred cEEEe-e---CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC--CcEEEEECCC-cEEE
Q psy4771 66 EAVVK-H---KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN--GALHVADAYF-GLYK 136 (337)
Q Consensus 66 ~~i~~-~---~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~--G~lyVad~~~-gv~~ 136 (337)
.++++ . +..+++...+|.|..|+. ++...+..+. ........+++.++ |+++++-... .|..
T Consensus 59 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 59 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA---------VHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp EEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC---------CCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec---------CCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence 45555 2 455668888998888875 3322332221 12245778999998 7555554444 4777
Q ss_pred EEcCCCe---EEEEeccccccCCCCCCCCCceeeCC-------------CCCcc----cccceeeeccc-----------
Q psy4771 137 VNVTTGQ---TEQLISMDTEIDGAKPQIPNSVTVDS-------------DGQTG----QTEQLISMDTE----------- 185 (337)
Q Consensus 137 vd~~~g~---~~~l~~~~~~~~g~~~~~P~~v~~~~-------------~g~~~----~~~~v~~~~~~----------- 185 (337)
+|..++. ...+.. ... .-..+++++ +++++ .++.|...+..
T Consensus 130 ~d~~~~~~~~~~~~~~----~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 130 VEFKENGTTSPIIIDA----HAI----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp EECCTTSCCCEEEEEC----CTT----CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCceeeEEecC----CCC----ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence 7776552 111111 111 113345555 45555 22333333211
Q ss_pred cCCCCCCCCccEEEcCC---CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe---eEEEec---cccceeeEEEcc
Q psy4771 186 IDGAKPQIPNSVTVDSD---GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK---NKVLIA---NLHFANGVELSA 256 (337)
Q Consensus 186 ~~~~~~~~pn~v~vd~~---G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~---~~~~~~---~~~~p~gia~~~ 256 (337)
+.+ .-...++++++++ |.+.++-.. +|.|..+|..+++ ...+.. .......+++++
T Consensus 202 ~~~-h~~~v~~~~~sp~~~~~~~l~s~~~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 202 LEG-HSDWVRDVAWSPTVLLRSYLASVSQ--------------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 266 (379)
T ss_dssp ECC-CSSCEEEEEECCCCSSSEEEEEEET--------------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred Eec-ccCcEeEEEECCCCCCCCeEEEEeC--------------CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC
Confidence 111 1234678888888 665544332 4566666655542 112222 233457899999
Q ss_pred CCCEEEEEeCCCCEEEEEEee
Q psy4771 257 DESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 257 dg~~lyva~~~~~~I~~~~~~ 277 (337)
|++.|+++.. .+.|..++++
T Consensus 267 ~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 267 SGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp SSCCEEEEES-SSSEEEEEEE
T ss_pred CCCEEEEecC-CCcEEEEeCC
Confidence 9987776655 5678777775
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.02 Score=51.04 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=89.6
Q ss_pred CeEEEEecCcEEEEEeCC--c-eeEEEecCccccCccccCccCCcceEEECCC----CcEEEEECCCc-EEEEEcCCCeE
Q psy4771 73 GDLYMGVDGGHILKLSGG--K-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN----GALHVADAYFG-LYKVNVTTGQT 144 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G~lyVad~~~g-v~~vd~~~g~~ 144 (337)
..+++...+++|..|+.. + ...+..+.. .........+++.++ |+++++-...+ |..+|..+++.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 107 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVD-------ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEEC-------SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccc-------cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE
Confidence 446677777888888753 2 222221110 012244678899888 54544433444 88888876654
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeee
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
..... + .-...+++++.+ ++++.++-..
T Consensus 108 ~~~~~------~---------------------------------~~~~i~~~~~~~~~~~~l~s~~~------------ 136 (366)
T 3k26_A 108 IKHYV------G---------------------------------HGNAINELKFHPRDPNLLLSVSK------------ 136 (366)
T ss_dssp EEEEE------S---------------------------------CCSCEEEEEECSSCTTEEEEEET------------
T ss_pred eeeec------C---------------------------------CCCcEEEEEECCCCCCEEEEEeC------------
Confidence 43322 0 123467889998 7775554432
Q ss_pred cCCccEEEEcCCCCeeEEEe----ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLI----ANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~----~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..+++..... ..-.....++++++++.|+.+.. .+.|..+++..
T Consensus 137 --dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 192 (366)
T 3k26_A 137 --DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS 192 (366)
T ss_dssp --TSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET-TSCEEEEESCS
T ss_pred --CCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC-CCCEEEEECCC
Confidence 468888888877665444 23456789999999987766654 57888888763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0053 Score=54.58 Aligned_cols=178 Identities=13% Similarity=-0.010 Sum_probs=98.8
Q ss_pred cEEEe-e-CCeEEEEecCcEEEEEeC--Cc-ee-EEEecCccccCccccCccCCcceEEECCCCc-EEEE-ECCCcEEEE
Q psy4771 66 EAVVK-H-KGDLYMGVDGGHILKLSG--GK-LV-PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVA-DAYFGLYKV 137 (337)
Q Consensus 66 ~~i~~-~-~g~ly~d~~~g~I~~~~~--~~-~~-~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVa-d~~~gv~~v 137 (337)
.++++ . +..+++...++.|..|+. ++ .. ..... ........+++.++|+ ++++ .....|..+
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----------ECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee----------ecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 34555 2 445668888898888764 33 11 11111 1224567899999998 4444 433448888
Q ss_pred Ec-CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccC
Q psy4771 138 NV-TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKS 216 (337)
Q Consensus 138 d~-~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~ 216 (337)
|. ++++...+... . .-.....+++.+ +..+++...
T Consensus 85 d~~~~~~~~~~~~~-----~---------------------------------~~~~v~~l~~~~-~~~l~s~~~----- 120 (342)
T 1yfq_A 85 DLIGSPSFQALTNN-----E---------------------------------ANLGICRICKYG-DDKLIAASW----- 120 (342)
T ss_dssp CSSSSSSEEECBSC-----C---------------------------------CCSCEEEEEEET-TTEEEEEET-----
T ss_pred EeccCCceEecccc-----C---------------------------------CCCceEEEEeCC-CCEEEEEcC-----
Confidence 88 77766443210 0 012357788888 665444332
Q ss_pred ceeeeeecCCccEEEEcCCC---------CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC-CCCCceee
Q psy4771 217 GLFEGLTSGSGRLIQYNPKT---------KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG-PKQGKSEV 286 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~---------~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g-~~~~~~~~ 286 (337)
+|.|..+|..+ ++.......-.....+++++++ ++++ ...+.|..+++.. ........
T Consensus 121 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~~~ 188 (342)
T 1yfq_A 121 ---------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGTIE 188 (342)
T ss_dssp ---------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCEEE
T ss_pred ---------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccceee
Confidence 34666666543 2211112233456789998876 5554 4467899999865 32211111
Q ss_pred eecCCCCCCCceeECC-CCCEEEEe
Q psy4771 287 FIDGLPGLPDNVKRDS-KGNFLVSL 310 (337)
Q Consensus 287 ~~~~~~g~Pdgi~~d~-dG~l~va~ 310 (337)
..........+++.+ +|+++++.
T Consensus 189 -~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 189 -ESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp -ECSCSSCEEEEEECSGGGCEEEEE
T ss_pred -ecCCCCceeEEEECCCCCCEEEEE
Confidence 222333467788888 88755444
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.015 Score=56.01 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=64.6
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEcc----------CCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSA----------DES 259 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~----------dg~ 259 (337)
.....++++++|++.++-.. +|.|..+|..+++...... .......++++| |++
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~--------------dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDV--------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp SCEEEEEECTTSSEEEEEET--------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred CceEEEEECCCCCEEEEcCC--------------CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence 34688999999885554432 4688888888776544333 344578999999 997
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
.|..+. ..+.|..++++... .....+. ...+....+++.++|+ .++.
T Consensus 555 ~l~~~~-~dg~i~iw~~~~~~-~~~~~~~-~h~~~v~~l~~s~~~~-l~s~ 601 (615)
T 1pgu_A 555 LVATGS-LDTNIFIYSVKRPM-KIIKALN-AHKDGVNNLLWETPST-LVSS 601 (615)
T ss_dssp EEEEEE-TTSCEEEEESSCTT-CCEEETT-SSTTCEEEEEEEETTE-EEEE
T ss_pred EEEEEc-CCCcEEEEECCCCc-eechhhh-cCccceEEEEEcCCCC-eEEe
Confidence 665554 45789999986431 1122222 1223356788888888 4443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.039 Score=54.83 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=102.6
Q ss_pred eEEEEecCcEEEEEeCCc-----eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEE
Q psy4771 74 DLYMGVDGGHILKLSGGK-----LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQL 147 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l 147 (337)
.|.+...++.|..|+..+ ......+. ........+++.++|+++++-+..+ |...|..+++....
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~---------~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~ 467 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLT---------GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR 467 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEE---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceec---------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE
Confidence 455888999888887521 11111111 2224467899999997766654444 88888877754433
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSG 227 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G 227 (337)
.. + .-....+++++++|+..++-+. +|
T Consensus 468 ~~------~---------------------------------h~~~v~~~~~s~~~~~l~s~s~--------------D~ 494 (694)
T 3dm0_A 468 FV------G---------------------------------HTKDVLSVAFSLDNRQIVSASR--------------DR 494 (694)
T ss_dssp EE------C---------------------------------CSSCEEEEEECTTSSCEEEEET--------------TS
T ss_pred Ee------C---------------------------------CCCCEEEEEEeCCCCEEEEEeC--------------CC
Confidence 21 1 1123578889998875554432 34
Q ss_pred cEEEEcCCCCeeEEEec----cccceeeEEEccCCC-EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 228 RLIQYNPKTKKNKVLIA----NLHFANGVELSADES-FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~----~~~~p~gia~~~dg~-~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
.|..+|..+.....+.. .....+.+++++++. .++++-...+.|..+++..... ...+. +..+....+++++
T Consensus 495 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~sp 571 (694)
T 3dm0_A 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLA-GHTGYVSTVAVSP 571 (694)
T ss_dssp CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECT
T ss_pred EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEeC
Confidence 67677765443322322 123467899999863 3556666678898888754321 12222 2234456788999
Q ss_pred CCCEEEEec
Q psy4771 303 KGNFLVSLV 311 (337)
Q Consensus 303 dG~l~va~~ 311 (337)
+|++.++..
T Consensus 572 dg~~l~sg~ 580 (694)
T 3dm0_A 572 DGSLCASGG 580 (694)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 998666554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.012 Score=53.10 Aligned_cols=144 Identities=10% Similarity=-0.001 Sum_probs=78.5
Q ss_pred CcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 113 RPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
....++++++|+++++-...+ |...|.+++....... ...| --
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~---~~~~---------------------------------h~ 61 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV---LSEG---------------------------------HQ 61 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE---ECSS---------------------------------CS
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee---eccc---------------------------------cC
Confidence 456899999997666644444 7667766654322111 0111 12
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccCCCEEEEEeCCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
...+.++++++|+..++-.. +|.+..+|..++.. ..+...-...+.++++|+++.|+.+. ..
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~--------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s-~D 126 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASF--------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS-RD 126 (345)
T ss_dssp SCEEEEEECTTSSEEEEEET--------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred CcEEEEEECCCCCEEEEEEC--------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-CC
Confidence 34678999999986555432 23444444333322 22223334568999999998655544 45
Q ss_pred CEEEEEEeeCCCCCc-eeeeecCCCCCCCceeECCCCCEEE
Q psy4771 269 SRVHRYYLKGPKQGK-SEVFIDGLPGLPDNVKRDSKGNFLV 308 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~-~~~~~~~~~g~Pdgi~~d~dG~l~v 308 (337)
+.|..++++...... ...+.. .......+++.++|.+.+
T Consensus 127 ~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 127 KSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp SCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSSSCEE
T ss_pred CeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCCCEEE
Confidence 788888886432111 112211 122234566677765433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.018 Score=51.45 Aligned_cols=70 Identities=7% Similarity=-0.034 Sum_probs=40.9
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecC-CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC-----
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSG-SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM----- 267 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~-~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~----- 267 (337)
...+++++|| ++++.....-. .... ...|+.+| +++.+.+..+ ... ..++|||+.|+++...
T Consensus 173 ~~~~~~spdg-~~~~~~~~~~~------~~~~~~~~l~~~d--~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~ 240 (347)
T 2gop_A 173 FSSGIWHRDK-IVVNVPHREII------PQYFKFWDIYIWE--DGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYM 240 (347)
T ss_dssp TCEEEEETTE-EEEEEECCCSS------CCSSCCEEEEEEE--TTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCC
T ss_pred cccccCCCCe-EEEEEeccccc------ccccccccEEEeC--CCceEEeccC-cce--eeECCCCCEEEEEEccccCCc
Confidence 4678888999 66654321100 0001 34788888 6766665544 222 2338999988665533
Q ss_pred --CCEEEEEE
Q psy4771 268 --SSRVHRYY 275 (337)
Q Consensus 268 --~~~I~~~~ 275 (337)
..+|+.++
T Consensus 241 ~~~~~l~~~d 250 (347)
T 2gop_A 241 SEHNKLYIYD 250 (347)
T ss_dssp CSSCEEEEEC
T ss_pred cccceEEEEC
Confidence 35788887
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.12 Score=47.70 Aligned_cols=84 Identities=8% Similarity=-0.009 Sum_probs=57.0
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC-CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET-MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~-~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
.++.|..+|..+++.............++++++++.++++.. ..+.|..+++...+ ....+. +..+....+++.+|
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~-gH~~~V~~l~~spd 375 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELK-GHTSRVLSLTMSPD 375 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTT
T ss_pred CCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCC
Confidence 356888889888877666666667788999999998887754 46788888875321 122222 22233567889999
Q ss_pred CCEEEEec
Q psy4771 304 GNFLVSLV 311 (337)
Q Consensus 304 G~l~va~~ 311 (337)
|.+.++..
T Consensus 376 g~~l~S~s 383 (420)
T 4gga_A 376 GATVASAA 383 (420)
T ss_dssp SSCEEEEE
T ss_pred CCEEEEEe
Confidence 98555543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.087 Score=46.98 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=82.9
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
++.+..+.|.+...++.|..|+.. .......+.. .........+++.++|+++++-...+ |...|.++..
T Consensus 19 ~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~-------~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~ 91 (330)
T 2hes_X 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE-------TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA 91 (330)
T ss_dssp EEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECT-------TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----
T ss_pred eeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEec-------CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCc
Confidence 445544566688889988888752 2222222210 01223467899999997766654444 6666654221
Q ss_pred E-----EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCce
Q psy4771 144 T-----EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218 (337)
Q Consensus 144 ~-----~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~ 218 (337)
. ..+.. ..| --...++++++++|+..++-..
T Consensus 92 ~~~~~~~~~~~----~~~---------------------------------h~~~V~~v~~sp~g~~las~s~------- 127 (330)
T 2hes_X 92 DRTFEMDLLAI----IEG---------------------------------HENEVKGVAWSNDGYYLATCSR------- 127 (330)
T ss_dssp ---CCCEEEEE----EC-------------------------------------CEEEEEECTTSCEEEEEET-------
T ss_pred CccccceeEEE----EcC---------------------------------CCCcEEEEEECCCCCEEEEEeC-------
Confidence 0 11100 011 1134678999999886655433
Q ss_pred eeeeecCCccEEEEcCC-CC---ee-EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 219 FEGLTSGSGRLIQYNPK-TK---KN-KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~-~~---~~-~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+|.|..+|.. .+ +. ..+...-...+.++++|+++.|.. -...+.|..++..
T Consensus 128 -------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s-~s~D~~i~iW~~~ 183 (330)
T 2hes_X 128 -------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS-SSYDDTVRIWKDY 183 (330)
T ss_dssp -------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE-EETTSCEEEEEEE
T ss_pred -------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEE-EcCCCeEEEEECC
Confidence 3466666653 22 11 223333445688999999975544 4455677777764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.24 E-value=0.039 Score=48.66 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=78.6
Q ss_pred EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccC
Q psy4771 77 MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEID 155 (337)
Q Consensus 77 ~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~ 155 (337)
+...++.|..|+.........+. ...+....++++++|+++++-...+ |...|..+++......
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~------ 254 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD------ 254 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------
T ss_pred EEcCCCEEEEEECCCCceeeEec---------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec------
Confidence 66677777777764333332221 1223467899999997766644444 7778887665433322
Q ss_pred CCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCC
Q psy4771 156 GAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK 235 (337)
Q Consensus 156 g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~ 235 (337)
.....+.+++.+++.+..+.. +|.|..+|.+
T Consensus 255 ----------------------------------~~~~v~~~~~~~~~~~~~~~~---------------d~~i~iwd~~ 285 (340)
T 4aow_A 255 ----------------------------------GGDIINALCFSPNRYWLCAAT---------------GPSIKIWDLE 285 (340)
T ss_dssp ----------------------------------CSSCEEEEEECSSSSEEEEEE---------------TTEEEEEETT
T ss_pred ----------------------------------CCceEEeeecCCCCceeeccC---------------CCEEEEEECC
Confidence 112345666777666543322 2355555655
Q ss_pred CCeeEEEe----------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 236 TKKNKVLI----------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 236 ~~~~~~~~----------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
++...... ......+.++++|||+.|+.+. ..+.|..++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~Dg~v~iW~~~t 337 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY-TDNLVRVWQVTI 337 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE-TTSCEEEEEEEC
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEeCCC
Confidence 44332111 1123457899999998666554 457788888763
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.003 Score=53.75 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=69.2
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
.....|+++|+|.||.+. ...++++++.+..-.........+ |. ...
T Consensus 41 ~~~~~laf~P~G~LYaV~-~G~Ly~~~~~t~~~~~W~~s~t~I-G~-------------------------------~Gw 87 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGVL-NDKIYKGTPPTHDNDNWMGRAKKI-GN-------------------------------GGW 87 (236)
T ss_dssp TTCSEEEECTTSCEEEEE-TTEEEEESCCCSTTCCHHHHCEEE-EC-------------------------------SCG
T ss_pred ccceeEEECCCccEEEEe-CCeEEEECCCCCCcccccccccEe-cc-------------------------------ccc
Confidence 346699999999999993 344999998653222222110000 00 022
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-------eEEEe-ccccceeeEEEccCCCEEEE
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-------NKVLI-ANLHFANGVELSADESFVIV 263 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-------~~~~~-~~~~~p~gia~~~dg~~lyv 263 (337)
+....+.+|++|.||.+. +|.|||+++.+.. .+.+- .+...-.-|.++|+| .||.
T Consensus 88 ~~F~a~~fD~~G~LYav~----------------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lya 150 (236)
T 1tl2_A 88 NQFQFLFFDPNGYLYAVS----------------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYA 150 (236)
T ss_dssp GGCSEEEECTTSCEEEEE----------------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEE
T ss_pred ccceEEEECCCCCEEEeC----------------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEE
Confidence 335789999999999772 3689999984321 11222 233344889999999 5998
Q ss_pred EeCCCCEEEE
Q psy4771 264 AETMSSRVHR 273 (337)
Q Consensus 264 a~~~~~~I~~ 273 (337)
.. .+++++
T Consensus 151 v~--dg~lyr 158 (236)
T 1tl2_A 151 VH--GQQFYK 158 (236)
T ss_dssp EE--TTEEEE
T ss_pred Ee--CCcEEe
Confidence 88 556766
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.045 Score=49.04 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=101.3
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~ 151 (337)
+..++++..+|.|..|+..+...+..+... . .....-.|.-+....|+.+.+-+....+..++..+++......
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~--~--v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~-- 121 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTITTP--N--PRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIE-- 121 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEEEE--C--CCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE--
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEecC--C--ceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEee--
Confidence 445568888998888875222111111100 0 0011223443444556666666655556666666555322221
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC--CCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS--DGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~--~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
.. .-.....+++++ +|+++++-.. +|.|
T Consensus 122 --~~----------------------------------~~~~v~~~~~~~~~~~~~l~s~s~--------------dg~i 151 (343)
T 3lrv_A 122 --VD----------------------------------SANEIIYMYGHNEVNTEYFIWADN--------------RGTI 151 (343)
T ss_dssp --CC----------------------------------CSSCEEEEECCC---CCEEEEEET--------------TCCE
T ss_pred --cC----------------------------------CCCCEEEEEcCCCCCCCEEEEEeC--------------CCcE
Confidence 00 012357788888 7876654432 4578
Q ss_pred EEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEE
Q psy4771 230 IQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFL 307 (337)
Q Consensus 230 ~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~ 307 (337)
..+|..+++....... ......++++|||+. +++-...+.|..+++....... ..+.....+....+++.++|.+.
T Consensus 152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~-lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l 229 (343)
T 3lrv_A 152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL-LALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWM 229 (343)
T ss_dssp EEEESSSSCEEEEECCCSSCCCCEEEECTTSCE-EEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEecCCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEE
Confidence 8888877766433322 224678999999974 4444556889999986432210 12222123446788999999866
Q ss_pred EEecCC
Q psy4771 308 VSLVCP 313 (337)
Q Consensus 308 va~~~~ 313 (337)
++....
T Consensus 230 ~s~~~~ 235 (343)
T 3lrv_A 230 VVECDQ 235 (343)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 665543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.023 Score=51.48 Aligned_cols=144 Identities=9% Similarity=0.031 Sum_probs=81.9
Q ss_pred cceEEECC-CC-cEEEEECC------CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccc
Q psy4771 114 PLGIKFDK-NG-ALHVADAY------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTE 185 (337)
Q Consensus 114 P~Gl~~d~-~G-~lyVad~~------~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~ 185 (337)
...+.+.+ +| .|+++... ..|+.+|.++++.+.+... .
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~------------------------------ 235 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH----A------------------------------ 235 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC----C------------------------------
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc----C------------------------------
Confidence 55788888 66 46554322 2488888876665544320 0
Q ss_pred cCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEcc-CCCEEEE
Q psy4771 186 IDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA-DESFVIV 263 (337)
Q Consensus 186 ~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyv 263 (337)
....+..+++++||+ |+++..... ...+.|+.+|.++++...+.. +...+ +++++ ||+.+++
T Consensus 236 ----~~~~~~~~~~spdg~~l~~~~~~~~----------~~~~~l~~~d~~~g~~~~l~~-~~~~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 236 ----EGESCTHEFWIPDGSAMAYVSYFKG----------QTDRVIYKANPETLENEEVMV-MPPCS-HLMSNFDGSLMVG 299 (396)
T ss_dssp ----TTEEEEEEEECTTSSCEEEEEEETT----------TCCEEEEEECTTTCCEEEEEE-CCSEE-EEEECSSSSEEEE
T ss_pred ----CCccccceEECCCCCEEEEEecCCC----------CccceEEEEECCCCCeEEeee-CCCCC-CCccCCCCceEEE
Confidence 012356678999987 665532110 112359999998887655442 11223 88999 9986665
Q ss_pred EeC---------------CCCEEEEEEeeCCCCCceeeeecCCCC----------CCCceeECCCCC-EEEEe
Q psy4771 264 AET---------------MSSRVHRYYLKGPKQGKSEVFIDGLPG----------LPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 264 a~~---------------~~~~I~~~~~~g~~~~~~~~~~~~~~g----------~Pdgi~~d~dG~-l~va~ 310 (337)
+.. +...|++++++++.. ..+...... ....+++++||+ |+.+.
T Consensus 300 ~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 300 DGCDAPVDVADADSYNIENDPFLYVLNTKAKSA---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp EECCC----------CCCCCCEEEEEETTTTBC---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred ecCCcceeeccccccccCCCCcEEEEecccCce---EEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 432 346899998765432 222221110 134567888887 44333
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.048 Score=50.81 Aligned_cols=144 Identities=8% Similarity=0.144 Sum_probs=89.9
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEe
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLI 148 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~ 148 (337)
.++..+++...++.|..|+..+...+..+. ........++++++|+.+++-...+ |..+|..+++.....
T Consensus 278 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILS---------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 356677788899999999874433333332 1224467899999996655544444 888898777644333
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCcc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
. + .-.....++++ +...++- ..+|.
T Consensus 349 ~------~---------------------------------h~~~v~~~~~~--~~~l~s~--------------s~dg~ 373 (464)
T 3v7d_B 349 Q------G---------------------------------HTALVGLLRLS--DKFLVSA--------------AADGS 373 (464)
T ss_dssp C------C---------------------------------CSSCEEEEEEC--SSEEEEE--------------ETTSE
T ss_pred e------C---------------------------------CCCcEEEEEEc--CCEEEEE--------------eCCCc
Confidence 2 1 01224556665 3333222 23467
Q ss_pred EEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 229 LIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 229 v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
|..+|..+++.............++++++++.|..+. .+.|..+++..+
T Consensus 374 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g 422 (464)
T 3v7d_B 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTC
T ss_pred EEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec--CCeEEEEECCCC
Confidence 8888887765444443444566789999998776665 679999997643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.016 Score=59.80 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=90.4
Q ss_pred CccEEEe-eCCe-EEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCcEEEEEcC
Q psy4771 64 GPEAVVK-HKGD-LYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFGLYKVNVT 140 (337)
Q Consensus 64 ~P~~i~~-~~g~-ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~ 140 (337)
...++++ .++. |.++..+|.|..|+.........+. .......++|.+ |+ |+.+.....|...|.+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~----------~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE----------DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS----------SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC----------CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 3456777 4554 5588999999999864433332221 123467899999 76 5555544558888887
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceee
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~ 220 (337)
+++...... . ....+.++++++|+..++-.
T Consensus 88 ~~~~~~~~~----~------------------------------------~~~V~~v~~sp~g~~l~sgs---------- 117 (902)
T 2oaj_A 88 SQKVLTTVF----V------------------------------------PGKITSIDTDASLDWMLIGL---------- 117 (902)
T ss_dssp TCSEEEEEE----C------------------------------------SSCEEEEECCTTCSEEEEEE----------
T ss_pred CCcEEEEEc----C------------------------------------CCCEEEEEECCCCCEEEEEc----------
Confidence 665432221 0 12357888889887443322
Q ss_pred eeecCCccEEEEcCCCCeeEEE------------eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVL------------IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~------------~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+|.|..+|.++++.... .........++++|++..++++-...+.| .+++..
T Consensus 118 ----~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~ 182 (902)
T 2oaj_A 118 ----QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE 182 (902)
T ss_dssp ----TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT
T ss_pred ----CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC
Confidence 245778888777664211 11123457899999754455555667788 888754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.007 Score=54.18 Aligned_cols=99 Identities=10% Similarity=0.149 Sum_probs=62.4
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC-----
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM----- 267 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~----- 267 (337)
...++++|||+ |+++..... .....|+.+|.++++...+...-. ...++++|||+.|+++...
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~----------~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~ 129 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEE----------KKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDE 129 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETT----------TTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC--
T ss_pred CCCeEECCCCCEEEEEEeccC----------CCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcC
Confidence 45678999986 555432110 012368999988887766554333 7889999999988877532
Q ss_pred ---------------------CCEEEEEEeeCCCCCce-eeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 268 ---------------------SSRVHRYYLKGPKQGKS-EVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 268 ---------------------~~~I~~~~~~g~~~~~~-~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..+|++++++++ .. ..+.. + ....+++.+|| ++++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l~~--~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEFEK--P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp -------CCCC---------CEEEEEEEETTTT---EEEEEEEE--E-TTCEEEEETTE-EEEEE
T ss_pred CcEEEcccceeecCcccccCccceEEEEECCCC---eEEeeecC--C-CcccccCCCCe-EEEEE
Confidence 356888887543 22 23322 2 35677788888 54444
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.013 Score=51.93 Aligned_cols=175 Identities=13% Similarity=0.045 Sum_probs=96.4
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeCCc---------eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEE
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSGGK---------LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLY 135 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~~~---------~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~ 135 (337)
.++++ .++.+++...++.|..|+... ...+.. ......+.++++++++ ++++.....|.
T Consensus 105 ~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~-l~~~~~d~~i~ 173 (342)
T 1yfq_A 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN----------TKVKNKIFTMDTNSSR-LIVGMNNSQVQ 173 (342)
T ss_dssp EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS----------SSSCCCEEEEEECSSE-EEEEESTTEEE
T ss_pred EEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeE----------EeeCCceEEEEecCCc-EEEEeCCCeEE
Confidence 45555 355666888888888887422 111111 1233567899999887 77776555688
Q ss_pred EEEcCC-CeE--EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCC
Q psy4771 136 KVNVTT-GQT--EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS 211 (337)
Q Consensus 136 ~vd~~~-g~~--~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~ 211 (337)
.+|..+ +.. ..... . .-.....+++.+ +|..+++...
T Consensus 174 i~d~~~~~~~~~~~~~~-----~----------------------------------~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 174 WFRLPLCEDDNGTIEES-----G----------------------------------LKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp EEESSCCTTCCCEEEEC-----S----------------------------------CSSCEEEEEECSGGGCEEEEEET
T ss_pred EEECCccccccceeeec-----C----------------------------------CCCceeEEEECCCCCCEEEEEec
Confidence 888765 321 11111 0 122467888988 8875544432
Q ss_pred CCccCceeeeeecCCccEEEEcCCCC------e-eEEEeccc---------cceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTK------K-NKVLIANL---------HFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~------~-~~~~~~~~---------~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
+|.+..++.+.+ + ...+.... ...+.++++++++.|+.+. ..+.|..++
T Consensus 215 --------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd 279 (342)
T 1yfq_A 215 --------------DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWN 279 (342)
T ss_dssp --------------TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEE
T ss_pred --------------CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEc
Confidence 234444333222 1 22222221 2578899999998666555 467899998
Q ss_pred eeCCCCCceeeeecCC-CCCCCceeECCCCCEEEEe
Q psy4771 276 LKGPKQGKSEVFIDGL-PGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 276 ~~g~~~~~~~~~~~~~-~g~Pdgi~~d~dG~l~va~ 310 (337)
+...+. ...+ ... .+....++ ++|++.++.
T Consensus 280 ~~~~~~--~~~~-~~~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 280 LQTRKK--IKNF-AKFNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp TTTTEE--EEEC-CCCSSSEEEEEE--ECSSEEEEE
T ss_pred CccHhH--hhhh-hcccCCCceEec--CCCCeEEEE
Confidence 753211 1111 111 22234566 788755544
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0065 Score=59.48 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=57.3
Q ss_pred ccCccEEEe--eCCeEEEEec----------------------CcEEEEEeCC--c-------eeEEEecCcccc-----
Q psy4771 62 IHGPEAVVK--HKGDLYMGVD----------------------GGHILKLSGG--K-------LVPVVKLGKDCY----- 103 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly~d~~----------------------~g~I~~~~~~--~-------~~~~~~~g~~~~----- 103 (337)
+..||++.+ .++.+|+.+. .|+|+||.+. . +..+...+....
T Consensus 383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~ 462 (592)
T 3zwu_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence 558999999 4789994322 3789999751 1 112222222110
Q ss_pred -----CccccCccCCcceEEECCCCcEEEEECC-------------CcEEEEEcCCCeEEEEec
Q psy4771 104 -----GFKYEQQCGRPLGIKFDKNGALHVADAY-------------FGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 104 -----~~~~~~~~~~P~Gl~~d~~G~lyVad~~-------------~gv~~vd~~~g~~~~l~~ 149 (337)
.......+..|-+|+||+.|+|||+.-. +.++..++.+|++++++.
T Consensus 463 ~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~ 526 (592)
T 3zwu_A 463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV 526 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE
T ss_pred cccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe
Confidence 0111234678999999999999999532 127788888899888875
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.11 Score=48.24 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=47.7
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEE
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQ 146 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~ 146 (337)
++.++++.+++...+|.|..|+..+.+.+..+. ...+....+++.+++.|+.+.....|...|.++++...
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~---------~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 197 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS---------GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 197 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe---------CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEE
Confidence 344467778899999999999864433333332 22345678999888866666544458888988776544
Q ss_pred E
Q psy4771 147 L 147 (337)
Q Consensus 147 l 147 (337)
.
T Consensus 198 ~ 198 (464)
T 3v7d_B 198 V 198 (464)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.044 Score=54.69 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=36.9
Q ss_pred CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.|.|..+|+.+|++.--........+..+..+++.+|++ +..+.++.++...
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~t 507 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT
T ss_pred ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCC
Confidence 488999999999864433322234566677777788887 5678999999753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0036 Score=62.42 Aligned_cols=118 Identities=14% Similarity=0.035 Sum_probs=77.5
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
+.++.+.++|+++.+.....|+.+|.++++.+.+...... .-..
T Consensus 18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~------------------------------------~~~~ 61 (719)
T 1z68_A 18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTM------------------------------------KSVN 61 (719)
T ss_dssp CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHH------------------------------------HTTT
T ss_pred CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccc------------------------------------cccc
Confidence 4478999999766665434599999998887776642100 0012
Q ss_pred CccEEEcCCCc-EEEEcCCC-CccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccCCCEEEEEeCCC
Q psy4771 194 PNSVTVDSDGM-VYWSDSST-KYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~-~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
...++++|||+ |.++.... .+ .....+.|+.+|.++++. ..+. .....++++|||+.|.++. .
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~-------~~s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~--~ 129 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLW-------RYSYTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY--Q 129 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECS-------SSCEEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE--T
T ss_pred eeeEEECCCCCeEEEEecCceeE-------EeecceEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE--C
Confidence 57889999997 55443211 00 011246899999988876 3332 3467799999999887775 4
Q ss_pred CEEEEEEeeCC
Q psy4771 269 SRVHRYYLKGP 279 (337)
Q Consensus 269 ~~I~~~~~~g~ 279 (337)
+.|+.+++.++
T Consensus 130 ~~i~~~~~~~g 140 (719)
T 1z68_A 130 NNIYLKQRPGD 140 (719)
T ss_dssp TEEEEESSTTS
T ss_pred CeEEEEeCCCC
Confidence 68888887643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.06 Score=53.70 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=57.9
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCC------C--eeEEEeccccceeeEEEccCCCEEEEE
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT------K--KNKVLIANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~------~--~~~~~~~~~~~p~gia~~~dg~~lyva 264 (337)
..++++++||+ |+++..... +....|+.+|.++ + ....+......- .-.+++||+.||+.
T Consensus 235 ~~~~~~SpDg~~l~~~~~~~~----------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~ 303 (710)
T 2xdw_A 235 MGGAELSDDGRYVLLSIREGC----------DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFK 303 (710)
T ss_dssp EEEEEECTTSCEEEEEEECSS----------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEE
T ss_pred EEEEEEcCCCCEEEEEEEccC----------CCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEE
Confidence 45788999997 554432110 0134778887765 4 344554433222 23578899988887
Q ss_pred eCC---CCEEEEEEeeCCCCCceeeeecCCC-CCCCceeECCCCCEEEEe
Q psy4771 265 ETM---SSRVHRYYLKGPKQGKSEVFIDGLP-GLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 265 ~~~---~~~I~~~~~~g~~~~~~~~~~~~~~-g~Pdgi~~d~dG~l~va~ 310 (337)
... ..+|+++++++......+.+....+ ....++++.+++.++++.
T Consensus 304 s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 304 TNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 543 3579999986542212233333222 123456665455555544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.12 Score=45.78 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=106.0
Q ss_pred EEEe-e-CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECC--CCcEEEEECC-CcEEEEEc
Q psy4771 67 AVVK-H-KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK--NGALHVADAY-FGLYKVNV 139 (337)
Q Consensus 67 ~i~~-~-~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~--~G~lyVad~~-~gv~~vd~ 139 (337)
++++ . +..|.+...++.|..|+. ++...+..+. ...+....+++.+ +|+++++-+. ..|...|.
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~---------gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR---------GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE---------CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc---------CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 4555 3 445668888998888874 3322222221 1224467899965 3655554334 44777887
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCC--CCcc---ccc-ceeeeccccC---------CCCCCCCccEEEcCCC-
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSD--GQTG---QTE-QLISMDTEID---------GAKPQIPNSVTVDSDG- 203 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~--g~~~---~~~-~v~~~~~~~~---------~~~~~~pn~v~vd~~G- 203 (337)
++++........ ...+ .-..++++++ |+++ ..+ .|...+.... .......+.+++++++
T Consensus 89 ~~~~~~~~~~~~-~h~~----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 89 ENGTWEKSHEHA-GHDS----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp SSSCCCEEEEEC-CCSS----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred CCCcceEEEEcc-CCCC----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 766422211100 0111 1345777776 6665 223 3332221100 0011234566776652
Q ss_pred --cEEEEcCCCCccCceeeeeecCCccEEEEcCCCC-e--e-EEEeccccceeeEEEccCC---CEEEEEeCCCCEEEEE
Q psy4771 204 --MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK-K--N-KVLIANLHFANGVELSADE---SFVIVAETMSSRVHRY 274 (337)
Q Consensus 204 --~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~-~--~-~~~~~~~~~p~gia~~~dg---~~lyva~~~~~~I~~~ 274 (337)
.+...............+....+|.|..+|..++ + . ..+...-...+.++++|++ ..++++-...++|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 1110000000000001111233455555554332 1 1 1122233456889999986 2355566667889888
Q ss_pred EeeCCCCC--ceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 275 YLKGPKQG--KSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 275 ~~~g~~~~--~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
+++....+ ....+.. ..+....+++.++|++.++.
T Consensus 244 ~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHK-FNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp ECSSTTCCCCBCCEEEE-CSSCEEEEEECTTTCCEEEE
T ss_pred EccCccccchhhhhhhc-CCCcEEEEEEcCCCCEEEEE
Confidence 87642111 1122221 22335678888888755443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.089 Score=51.21 Aligned_cols=172 Identities=8% Similarity=0.004 Sum_probs=92.8
Q ss_pred CCcceEEECCCCc-EEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeecccc
Q psy4771 112 GRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEI 186 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~ 186 (337)
....++++.|+|. |-++.....+...|.++ .+..+. ........ .-+.+++++||+++ .++.|...+.+-
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~---sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSR---TYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTT---CEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccc---cEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 4467999999995 55555434477777543 222222 10000010 12468999999998 233333333111
Q ss_pred C-----------------CCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE----EEec-
Q psy4771 187 D-----------------GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK----VLIA- 244 (337)
Q Consensus 187 ~-----------------~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~----~~~~- 244 (337)
. ..-......+++.||| + ++... ++.+..+|.++++.. .+..
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L-aass~--------------D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L-VAALS--------------NNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E-EEEET--------------TCCEEEECCCSSSSCCCEEEEECC
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCc-E-EEEeC--------------CCeEEEEECCCCccccceeeeccc
Confidence 1 0012367788888887 3 33222 346777777666531 2322
Q ss_pred cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE--CCCCCEEEEec
Q psy4771 245 NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR--DSKGNFLVSLV 311 (337)
Q Consensus 245 ~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~--d~dG~l~va~~ 311 (337)
.-.....++++ |+.|..+. .++|..+++.+.. ...+..+....-.++++ .++|...+...
T Consensus 225 h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~---~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 225 SRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYS---ISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp CSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTE---EEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred ccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCe---EEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 22457889998 45666664 4799999976542 21222122233456777 66665444443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.15 Score=45.96 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=81.5
Q ss_pred ccEEEe-e-CC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCC---CcEEEE-ECCCcEEEE
Q psy4771 65 PEAVVK-H-KG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN---GALHVA-DAYFGLYKV 137 (337)
Q Consensus 65 P~~i~~-~-~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~---G~lyVa-d~~~gv~~v 137 (337)
..++++ . ++ .+++...++.|..|+.........+. .......+.+.+. +.++++ .....|..+
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 445555 3 44 45588889999999874333222221 1133556777664 335444 333448888
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~ 216 (337)
|..+++...... + .-.....+++.++|. ++++...
T Consensus 172 d~~~~~~~~~~~------~---------------------------------~~~~v~~~~~~~~~~~ll~~~~~----- 207 (408)
T 4a11_B 172 DLKSGSCSHILQ------G---------------------------------HRQEILAVSWSPRYDYILATASA----- 207 (408)
T ss_dssp ESSSSCCCEEEC------C---------------------------------CCSCEEEEEECSSCTTEEEEEET-----
T ss_pred eCCCcceeeeec------C---------------------------------CCCcEEEEEECCCCCcEEEEEcC-----
Confidence 877654332221 0 112356778888775 4444322
Q ss_pred ceeeeeecCCccEEEEcCCCCe--eEEE---------------eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKK--NKVL---------------IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~--~~~~---------------~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..++. ...+ ...-.....++++++++.|+++.. .+.|..+++..
T Consensus 208 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 276 (408)
T 4a11_B 208 ---------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSN 276 (408)
T ss_dssp ---------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT
T ss_pred ---------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECCC
Confidence 3455555554332 1111 112234577889998876666553 46777777753
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.16 Score=50.68 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=48.3
Q ss_pred CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC-CceeeeecCCCCCCCceeECCCC
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ-GKSEVFIDGLPGLPDNVKRDSKG 304 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~-~~~~~~~~~~~g~Pdgi~~d~dG 304 (337)
.|.|..+|+.+|++.--.......++-.++..+..+|++ +..+.|+.|+.+.++. -+.+. -.+..+.| +....+|
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p--~ty~~~G 529 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLWEQPA-ASGVMAAP--VTYSVDG 529 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC-SSCCCSCC--EEEEETT
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCccceeeeC-CCCcccCc--eEEEECC
Confidence 388999999999864333221112333555566677776 4578999999754321 11110 01111223 4445689
Q ss_pred CEEEEecCC
Q psy4771 305 NFLVSLVCP 313 (337)
Q Consensus 305 ~l~va~~~~ 313 (337)
+.||+...+
T Consensus 530 ~qyv~~~~G 538 (689)
T 1yiq_A 530 EQYVTFMAG 538 (689)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 999887654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.85 E-value=0.019 Score=57.62 Aligned_cols=122 Identities=7% Similarity=-0.025 Sum_probs=79.8
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
-..+.+.++|.+++++ ...|+.+|.++++...+.... ... .-...
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~---~~~-------------------------------~~~~~ 63 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENS---TFD-------------------------------EFGHS 63 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTT---TTT-------------------------------TCCSC
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEech---hhh-------------------------------hhccc
Confidence 3478999999777776 455999999988876665310 000 00112
Q ss_pred CccEEEcCCCc-EEEEcCCC-CccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 194 PNSVTVDSDGM-VYWSDSST-KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~-~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
.++++++|||+ |.++.... .+ -+...|.++.+|.++++...+......-...++||||+.|.++. .+.|
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~-------r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i 134 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQW-------RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDI 134 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECS-------SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEE
T ss_pred ccceEECCCCCEEEEEECCeeeE-------EEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCeE
Confidence 46789999997 55443211 10 02234688999999998765544444567889999999886664 4688
Q ss_pred EEEEeeCC
Q psy4771 272 HRYYLKGP 279 (337)
Q Consensus 272 ~~~~~~g~ 279 (337)
+..+++++
T Consensus 135 ~~~~~~~~ 142 (740)
T 4a5s_A 135 YVKIEPNL 142 (740)
T ss_dssp EEESSTTS
T ss_pred EEEECCCC
Confidence 88877653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.18 Score=44.84 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=82.1
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeCCc-------eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEE
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSGGK-------LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLY 135 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~ 135 (337)
.++++ .++ .|.+...++.|..|+... ......+. .......+++++++|+.+++-... .|.
T Consensus 62 ~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~---------~h~~~V~~v~~sp~g~~las~s~D~~v~ 132 (330)
T 2hes_X 62 RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE---------GHENEVKGVAWSNDGYYLATCSRDKSVW 132 (330)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-------------CEEEEEECTTSCEEEEEETTSCEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc---------CCCCcEEEEEECCCCCEEEEEeCCCEEE
Confidence 45666 444 455888899888887521 11111111 122446789999999766664444 477
Q ss_pred EEEcC-CCe-EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 136 KVNVT-TGQ-TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 136 ~vd~~-~g~-~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
..|.. ++. ...+.. ..+ .-...+.+++.++|.+.++-..
T Consensus 133 iwd~~~~~~~~~~~~~----~~~---------------------------------h~~~v~~v~~~p~~~~l~s~s~-- 173 (330)
T 2hes_X 133 IWETDESGEEYECISV----LQE---------------------------------HSQDVKHVIWHPSEALLASSSY-- 173 (330)
T ss_dssp EEECCTTCCCCEEEEE----ECC---------------------------------CSSCEEEEEECSSSSEEEEEET--
T ss_pred EEeccCCCCCeEEEEE----ecc---------------------------------CCCceEEEEECCCCCEEEEEcC--
Confidence 77763 221 111111 011 1124678899999886665543
Q ss_pred ccCceeeeeecCCccEEEEcCCCCe---eEEEeccccceeeEEEccC--CCEEEEEeCCCCEEEEEEeeC
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKK---NKVLIANLHFANGVELSAD--ESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~---~~~~~~~~~~p~gia~~~d--g~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..++. +..+...-.....++++++ +. .+++-...+.|..+++.+
T Consensus 174 ------------D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 174 ------------DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp ------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEE
T ss_pred ------------CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecC
Confidence 2345444443332 1222233345678999998 43 444555567777777753
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.017 Score=57.74 Aligned_cols=107 Identities=10% Similarity=-0.026 Sum_probs=62.5
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC----
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS---- 268 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~---- 268 (337)
..+++++|||+ |.++..... .....|+.+|.++++.......-....+++++|||+.||++....
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G----------~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASG----------SDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETT----------CSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEECCCCCEEEEEEcCCC----------CceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccc
Confidence 46788999997 444332110 011278999998887654322112246799999999988876442
Q ss_pred -----------CEEEEEEeeCCCCCceeeeecC-CCCCCCceeECCCCC-EEEEe
Q psy4771 269 -----------SRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 269 -----------~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~dG~-l~va~ 310 (337)
.+|+++++.++......++... .+....++++++||+ |.++.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence 3588888754322112232221 122334788999997 33333
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.053 Score=50.45 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=84.8
Q ss_pred cEEEe--eCC-eEEEEecCcEEEEEeCC-c-eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEc
Q psy4771 66 EAVVK--HKG-DLYMGVDGGHILKLSGG-K-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNV 139 (337)
Q Consensus 66 ~~i~~--~~g-~ly~d~~~g~I~~~~~~-~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~ 139 (337)
.+|++ .++ .|++...++.|..|+.. + ...+. ... ........++++++|.++++-...+ |..+|.
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA--SSD-------TINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE--CCS-------SCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe--ccC-------CCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 45666 244 56688889988888863 2 22221 110 1112345789999997777654444 777787
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCce
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGL 218 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~ 218 (337)
++..+..+. + --...+.+++++++. ++++...
T Consensus 239 ~~~~~~~~~-------~---------------------------------h~~~v~~v~~~p~~~~~~~s~s~------- 271 (435)
T 4e54_B 239 DGKELWNLR-------M---------------------------------HKKKVTHVALNPCCDWFLATASV------- 271 (435)
T ss_dssp SSCBCCCSB-------C---------------------------------CSSCEEEEEECTTCSSEEEEEET-------
T ss_pred CcceeEEEe-------c---------------------------------ccceEEeeeecCCCceEEEEecC-------
Confidence 654332221 1 012357888888775 4444322
Q ss_pred eeeeecCCccEEEEcCCCCeeE-EE---eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKNK-VL---IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~~-~~---~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..+.+.. .+ ...-...+.++++|||+.|+.+. ..+.|..+++..
T Consensus 272 -------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~ 327 (435)
T 4e54_B 272 -------DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ 327 (435)
T ss_dssp -------TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS
T ss_pred -------cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC
Confidence 335555565443211 11 11223457889999998666554 457888888753
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0016 Score=60.04 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=31.4
Q ss_pred EEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeE
Q psy4771 68 VVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQT 144 (337)
Q Consensus 68 i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~ 144 (337)
.++.++.+|+...++.|+.++..+.+...++.. +......+..+|.+|++... ..|+.+|.++|+.
T Consensus 5 P~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 5 VTLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp ---CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----------CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred CeeeCCEEEEEcCCCEEEEEECCCCCEEEEecC-----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 345788999888999999999633222211110 11111222345677777444 3488899877754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.21 Score=46.31 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=34.5
Q ss_pred CccEEEEcCCCCeeEEEe------ccccceeeEEEccCCCEEEEEeCCCC---EEEEEEeeC
Q psy4771 226 SGRLIQYNPKTKKNKVLI------ANLHFANGVELSADESFVIVAETMSS---RVHRYYLKG 278 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~------~~~~~p~gia~~~dg~~lyva~~~~~---~I~~~~~~g 278 (337)
+|.|..+|..+++..... ........+++++++..+.++...+. +|..++.+.
T Consensus 381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 381 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 568888888877653333 12345688999999865555554432 588888653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.4 Score=43.15 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=50.9
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCcc-EEEEcCCCCeeEEEec---cccceeeEEEccCCCEEEEEeCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR-LIQYNPKTKKNKVLIA---NLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~-v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyva~~~ 267 (337)
...+.++++++|++.++-.. +|. |..+|..+++...... .....+.++++||++.|..+ ..
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~--------------d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~-s~ 260 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQ--------------DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV-SD 260 (355)
T ss_dssp SCEEEEEECTTSSEEEEEET--------------TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE-ET
T ss_pred CceEEEEECCCCCEEEEEeC--------------CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE-EC
Confidence 34678999999886655443 456 8888888776544333 34456899999999865554 45
Q ss_pred CCEEEEEEeeCC
Q psy4771 268 SSRVHRYYLKGP 279 (337)
Q Consensus 268 ~~~I~~~~~~g~ 279 (337)
.+.|..+++...
T Consensus 261 d~~v~iw~~~~~ 272 (355)
T 3vu4_A 261 KWTLHVFEIFND 272 (355)
T ss_dssp TCEEEEEESSCC
T ss_pred CCEEEEEEccCC
Confidence 678999998643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.074 Score=53.04 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=46.5
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCcccc-CccccCcc-CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCY-GFKYEQQC-GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~-~~~~~~~~-~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.++.+|+...+++|+.+|..+.+.+-++..... .......| ....+++++ +++||++.....|+.+|.++|+...-
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4699999888889999999743333322211000 00000000 112356664 56899996556699999998887655
Q ss_pred ec
Q psy4771 148 IS 149 (337)
Q Consensus 148 ~~ 149 (337)
..
T Consensus 154 ~~ 155 (677)
T 1kb0_A 154 QN 155 (677)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.029 Score=50.79 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=70.7
Q ss_pred cceEEECCCCc-EEEEECC---Cc--EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 114 PLGIKFDKNGA-LHVADAY---FG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 114 P~Gl~~d~~G~-lyVad~~---~g--v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+..++++++|+ |+++... .. |+.+|.++++...+.. ..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~-------------------------------- 283 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV----MP-------------------------------- 283 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE----CC--------------------------------
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee----CC--------------------------------
Confidence 45678888884 5555221 23 8888887776655542 00
Q ss_pred CCCCCCCccEEEcC-CCcEEEEcCCCC---ccCceeeeeecCCccEEEEcCCCCeeEEEecccc-----------ceeeE
Q psy4771 188 GAKPQIPNSVTVDS-DGMVYWSDSSTK---YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH-----------FANGV 252 (337)
Q Consensus 188 ~~~~~~pn~v~vd~-~G~lyvtd~~~~---~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~-----------~p~gi 252 (337)
..+ +++.+ ||+++++..... ..+. -.......+.|+.+|.++++...+..... ....+
T Consensus 284 -----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 356 (396)
T 3c5m_A 284 -----PCS-HLMSNFDGSLMVGDGCDAPVDVADA-DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHP 356 (396)
T ss_dssp -----SEE-EEEECSSSSEEEEEECCC-----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCC
T ss_pred -----CCC-CCccCCCCceEEEecCCcceeeccc-cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCc
Confidence 012 67888 888665432100 0000 00001234589999998887655543322 24567
Q ss_pred EEccCCCEEEEEeCC--CCEEEEEEeeCC
Q psy4771 253 ELSADESFVIVAETM--SSRVHRYYLKGP 279 (337)
Q Consensus 253 a~~~dg~~lyva~~~--~~~I~~~~~~g~ 279 (337)
++++||+.|+++... ...|+++++++.
T Consensus 357 ~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 357 SFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 899999988877653 346777776653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.14 Score=44.71 Aligned_cols=70 Identities=10% Similarity=-0.087 Sum_probs=41.4
Q ss_pred ccEEEe-e---CCeEEEEecCcEEEEEeCCce---------eEEEecCccccCccccCccCCcceEEECCC--CcEEEEE
Q psy4771 65 PEAVVK-H---KGDLYMGVDGGHILKLSGGKL---------VPVVKLGKDCYGFKYEQQCGRPLGIKFDKN--GALHVAD 129 (337)
Q Consensus 65 P~~i~~-~---~g~ly~d~~~g~I~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~--G~lyVad 129 (337)
..++++ . +..|++...++.|..|+.... ..+..+. .......++++.++ ++++++-
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN---------DSKGSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC---------CCSSCEEEEEECCGGGCSEEEEE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec---------ccCCceeEEEEcCCCCCcEEEEe
Confidence 345666 3 345568888998888875221 2222221 22345678999998 8655554
Q ss_pred CCC-cEEEEEcCCCe
Q psy4771 130 AYF-GLYKVNVTTGQ 143 (337)
Q Consensus 130 ~~~-gv~~vd~~~g~ 143 (337)
... .|..+|..+++
T Consensus 131 ~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 131 GNDGILRLYDALEPS 145 (351)
T ss_dssp ETTCEEEEEECSSTT
T ss_pred cCCCcEEEecCCChH
Confidence 344 47778876553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.76 Score=44.66 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=47.5
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKG 304 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG 304 (337)
..|.|+.+|+.+|+..--........+..+...+..+|+.. ..+.|+.++.+.++.-. .+.......-.-+....+|
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT-LDGYLKALDNKDGKELW--NFKMPSGGIGSPMTYSFKG 518 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc-CCCeEEEEECCCCCEEE--EEeCCCCcEeeeEEEEECC
Confidence 45899999999987643332222233434443455788864 56889999975332111 1111111111223333689
Q ss_pred CEEEEecCC
Q psy4771 305 NFLVSLVCP 313 (337)
Q Consensus 305 ~l~va~~~~ 313 (337)
++||+...+
T Consensus 519 ~~yv~~~~G 527 (571)
T 2ad6_A 519 KQYIGSMYG 527 (571)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEECC
Confidence 999998766
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.35 Score=48.06 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=35.0
Q ss_pred CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.|.|+.+|+.+|+..--........+.++...++.+|+. +..+.|+.++.+.
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~t 488 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhc
Confidence 388999999999874333322233444555566688887 4568899998753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.27 Score=50.68 Aligned_cols=154 Identities=8% Similarity=-0.117 Sum_probs=90.5
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcE-EEEECCCcEEEEEcCCCe
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGAL-HVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~l-yVad~~~gv~~vd~~~g~ 143 (337)
.++++ .+..|.+...++.|..|+..+...+..+. ..+....++++++|+. +++.....|..+|.++++
T Consensus 62 ~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~----------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 62 KEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF----------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp EEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE----------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc----------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 45555 43346688889999999864332232221 1134678999999954 555443448888988776
Q ss_pred EEEEeccc-----cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCCCccCc
Q psy4771 144 TEQLISMD-----TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYKSG 217 (337)
Q Consensus 144 ~~~l~~~~-----~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~~~~~~ 217 (337)
...+.... ....+ .....+++++++++ .+.++-.
T Consensus 132 ~~~~~i~~~~~~~~~~~~---------------------------------h~~~V~sl~~sp~~~~~l~~g~------- 171 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAA---------------------------------RLSPIVSIQWNPRDIGTVLISY------- 171 (902)
T ss_dssp EEEEEECCHHHHHTCSSS---------------------------------CCCCCCEEEEETTEEEEEEEEC-------
T ss_pred cccceecccccccccccc---------------------------------CCCCeEEEEEccCCCCEEEEEe-------
Confidence 54221100 00011 12357889999863 4333322
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEeccc-------------------cceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLIANL-------------------HFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-------------------~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+|.| .+|..+++........ ...+.++++|||+.|.. -...+.|..+++..
T Consensus 172 -------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las-gs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 172 -------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT-IHEDNSLVFWDANS 242 (902)
T ss_dssp -------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE-EETTCCEEEEETTT
T ss_pred -------CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCC
Confidence 24567 7887776543333211 34688999999975544 44567888888753
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=1 Score=43.96 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=47.1
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC--CCCceeECC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG--LPDNVKRDS 302 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g--~Pdgi~~d~ 302 (337)
..|.|+.+|+.+|+..--........+-.+...+..+|+.. ..+.++.|+.+.++. ++--.++. ...-+....
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~-~dg~l~A~D~~tG~~----lW~~~~~~g~~a~P~~y~~ 538 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT-GDGYFKAFDAKSGKE----LWKFQTGSGIVSPPITWEQ 538 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC-TTSEEEEEETTTCCE----EEEEECSSCCCSCCEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC-CCCcEEEEECCCCCE----EEEecCCCCcccCceEEEE
Confidence 46899999999998643222211122322333445788865 467899998753321 11111111 112255557
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
+|+.||+...+
T Consensus 539 ~G~qYv~~~~G 549 (582)
T 1flg_A 539 DGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEcc
Confidence 89999998766
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=1 Score=44.04 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=46.2
Q ss_pred CCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC-CceeeeecCCCCCCCceeECC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ-GKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~-~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
..|.|+.+|+.+|++.--.. +...-.| .+...+..+|+.. ..+.|+.|+.+.++. -+.++ -.+..+.| +....
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~tagg~vf~gt-~dg~l~A~D~~tG~~lW~~~l-~~g~~~~P--~~y~~ 525 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGG-TMATAGDLVFYGT-LDGYLKARDSDTGDLLWKFKI-PSGAIGYP--MTYTH 525 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC-SSCCCSCC--EEEEE
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCc-ceEecCCEEEEEC-CCCeEEEEECCCCCEEEEeeC-CCCcEecc--EEEEe
Confidence 45899999999998643222 2111123 2233445788864 467899998754321 11111 11111223 44446
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
+|+.||+...+
T Consensus 526 ~G~qyv~~~~G 536 (599)
T 1w6s_A 526 KGTQYVAIYYG 536 (599)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEcc
Confidence 89999988766
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.32 Score=47.37 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=45.5
Q ss_pred eeCCeEEEEec-CcEEEEEeC-CceeEEEecCccccCccccCcc--CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 70 KHKGDLYMGVD-GGHILKLSG-GKLVPVVKLGKDCYGFKYEQQC--GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 70 ~~~g~ly~d~~-~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~--~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
+.++.+|+... +++|+.+|. .+.+.+-++............| ....+++++ +|+||+......++.+|.++|++.
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence 46899997777 889999996 4443332221100000000001 012355664 568999965556999999988876
Q ss_pred EEe
Q psy4771 146 QLI 148 (337)
Q Consensus 146 ~l~ 148 (337)
.-.
T Consensus 139 W~~ 141 (571)
T 2ad6_A 139 WEV 141 (571)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.74 Score=41.34 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=52.5
Q ss_pred cCCccEEEEcCCCCe-----------------eEEEeccccceeeEEEccCCCEEEEEeCCCCE-EEEEEeeCCCCCcee
Q psy4771 224 SGSGRLIQYNPKTKK-----------------NKVLIANLHFANGVELSADESFVIVAETMSSR-VHRYYLKGPKQGKSE 285 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~-----------------~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~-I~~~~~~g~~~~~~~ 285 (337)
..+|.|..+|..+++ ...+...-...+.++++|||+.|..+. ..+. |..+++...+ ...
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d~~~v~iwd~~~~~--~~~ 232 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QDGTIIRVFKTEDGV--LVR 232 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TTCSEEEEEETTTCC--EEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CCCCEEEEEECCCCc--EEE
Confidence 456778888877654 344444455678999999997555554 4565 8888875321 122
Q ss_pred eeecC-CCCCCCceeECCCCCEEEEecC
Q psy4771 286 VFIDG-LPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 286 ~~~~~-~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
.+..+ ..+....++++++|++.++...
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence 33312 2334567889999986665543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.78 Score=42.28 Aligned_cols=207 Identities=11% Similarity=0.059 Sum_probs=106.0
Q ss_pred CccEEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCe
Q psy4771 64 GPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 64 ~P~~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~ 143 (337)
.-.++.+.++.+++...++.|..|+..+...+..+. ........+.++. ..++++.....|..+|..+++
T Consensus 201 ~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 270 (445)
T 2ovr_B 201 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM---------GHVAAVRCVQYDG-RRVVSGAYDFMVKVWDPETET 270 (445)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE---------CCSSCEEEEEECS-SCEEEEETTSCEEEEEGGGTE
T ss_pred cEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEc---------CCcccEEEEEECC-CEEEEEcCCCEEEEEECCCCc
Confidence 346888888889988899999999863322222221 1123456777754 478888777877777777666
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC------CCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG------AKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~------~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
....... ..+. -..+.+ +|+.+ .++.|...+..... ........+.+ +++..++
T Consensus 271 ~~~~~~~---~~~~----v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~----- 334 (445)
T 2ovr_B 271 CLHTLQG---HTNR----VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS----- 334 (445)
T ss_dssp EEEEECC---CSSC----EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE-----
T ss_pred EeEEecC---CCCc----eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE-----
Confidence 5444421 1110 111222 33333 11222222210000 00111222222 2222222
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee-
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI- 288 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~- 288 (337)
...+|.|..+|..+++....... ......++++ ++.|+. -...+.|..+++..++. ...+.
T Consensus 335 ---------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s-~~~dg~v~iwd~~~~~~--~~~~~~ 400 (445)
T 2ovr_B 335 ---------GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT-SSDDGTVKLWDLKTGEF--IRNLVT 400 (445)
T ss_dssp ---------EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE-EETTSEEEEEETTTCCE--EEEEEE
T ss_pred ---------EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE-EeCCCeEEEEECCCCce--eeeeec
Confidence 33457888888877765433332 2334566664 554444 44568899999764321 12221
Q ss_pred ---cCCCCCCCceeECCCCCEEEEe
Q psy4771 289 ---DGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 289 ---~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
....+....++++++|.+.++.
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred cccCCCCceEEEEEecCCEEEEEEc
Confidence 1122345678888888654443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.68 Score=39.96 Aligned_cols=82 Identities=9% Similarity=-0.011 Sum_probs=52.6
Q ss_pred CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC-CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCC
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET-MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKG 304 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~-~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG 304 (337)
.+.|..+|..................++++++++.++++.. ..+.|..+++...+ ....+. +..+....+++.++|
T Consensus 220 ~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~-gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELK-GHTSRVLSLTMSPDG 296 (318)
T ss_dssp TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTS
T ss_pred CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCC
Confidence 45677777766665555555556778899999988877653 46788888875321 122222 122335678899999
Q ss_pred CEEEEe
Q psy4771 305 NFLVSL 310 (337)
Q Consensus 305 ~l~va~ 310 (337)
++.++.
T Consensus 297 ~~l~S~ 302 (318)
T 4ggc_A 297 ATVASA 302 (318)
T ss_dssp SCEEEE
T ss_pred CEEEEE
Confidence 865554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.3 Score=48.56 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=46.2
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCc-cccCccC-CcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGF-KYEQQCG-RPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~-~~~~~~~-~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.++.+|+...+++|+.+|..+.+.+-++....... .....|. ...+++++ +++||+......|+.+|.++|+...-
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CCEEEEEcCCCEEEEEECCCCCEeee
Confidence 469999988889999999973333332221100000 0000111 12456664 56899987555699999998987655
Q ss_pred e
Q psy4771 148 I 148 (337)
Q Consensus 148 ~ 148 (337)
.
T Consensus 143 ~ 143 (668)
T 1kv9_A 143 Q 143 (668)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.23 Score=43.85 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=50.1
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEE--ccCCCEEEEEeCCCCE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVEL--SADESFVIVAETMSSR 270 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~--~~dg~~lyva~~~~~~ 270 (337)
..+.+++.++|+..++-.. +|.|..+|..+++.......-.....+++ +++++.|+.+ ...+.
T Consensus 88 ~v~~~~~~~~~~~l~s~~~--------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~ 152 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASC--------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG-SWDKT 152 (368)
T ss_dssp CEEEEEECTTSSEEEEEET--------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEE-ETTSE
T ss_pred CEEEEEECcCCCEEEEEcC--------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEc-cCCCc
Confidence 3678999999875544332 45788888888877666555566788999 8888645544 45678
Q ss_pred EEEEEeeC
Q psy4771 271 VHRYYLKG 278 (337)
Q Consensus 271 I~~~~~~g 278 (337)
|..+++..
T Consensus 153 i~vwd~~~ 160 (368)
T 3mmy_A 153 LKFWDTRS 160 (368)
T ss_dssp EEEECSSC
T ss_pred EEEEECCC
Confidence 88888754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.17 Score=46.60 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=43.2
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQ 146 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~ 146 (337)
+..+++...++.|..|+......+..+... ...+....++++++|+++++-...+ |..+|..+++...
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENS-------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECC-------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccC-------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 345558888999999987433333222110 0234578999999997666544445 8888987765443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.052 Score=54.03 Aligned_cols=100 Identities=10% Similarity=-0.006 Sum_probs=58.6
Q ss_pred CccEEEcCCCc-EEEE-cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce--eeEEEccCCCEEEEEeCC--
Q psy4771 194 PNSVTVDSDGM-VYWS-DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA--NGVELSADESFVIVAETM-- 267 (337)
Q Consensus 194 pn~v~vd~~G~-lyvt-d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p--~gia~~~dg~~lyva~~~-- 267 (337)
..+++++|||+ |.++ +.+. .....|+.+|.++++... ...+... .+++++|||+.|+.+...
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G-----------~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNA-----------ADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETT-----------CSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCC-----------CceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCC
Confidence 56788999997 4333 3221 112478999998887530 1122222 689999999988877653
Q ss_pred ----------CCEEEEEEeeCCCCCceeeeecC-CCCCCCceeECCCCC
Q psy4771 268 ----------SSRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ----------~~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~dG~ 305 (337)
..+|+++++.++......++... .+..-.++++++||+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~ 239 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK 239 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC
Confidence 24588888754322122332221 112234678888886
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.39 Score=47.64 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=55.8
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC---CCC
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET---MSS 269 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~---~~~ 269 (337)
..++++++||+ |.++..... ....|+.++..+++.+.+............ ++|+ +|+... ...
T Consensus 229 ~~~~~~SpDG~~l~~~~~~~~-----------~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~ 295 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILRGW-----------SENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQ 295 (695)
T ss_dssp EEEEEECTTSCCEEEEEEETT-----------TEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTC
T ss_pred EEEEEECCCCCEEEEEEeCCC-----------CceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCC
Confidence 45788999986 554432210 123677777766666666654443344444 6777 766543 357
Q ss_pred EEEEEEeeCCCCCceeeeecCCC-CCCCceeECCCCCEEEEe
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLP-GLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~-g~Pdgi~~d~dG~l~va~ 310 (337)
+|+++++++....+.+.+....+ ....++++. ++.++++.
T Consensus 296 ~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~ 336 (695)
T 2bkl_A 296 RVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEY 336 (695)
T ss_dssp EEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEE
T ss_pred EEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEE
Confidence 89999886542211233332221 123455665 45555544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.31 Score=45.57 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCcceEEECCC-CcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 112 GRPLGIKFDKN-GALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 112 ~~P~Gl~~d~~-G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
....+++++++ ++++++-... .|..+|..++....... +
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~------~--------------------------------- 190 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL------P--------------------------------- 190 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE------C---------------------------------
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc------C---------------------------------
Confidence 45789999998 6766654444 48888887663321111 0
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc-------cceeeEEEccCCCEEE
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-------HFANGVELSADESFVI 262 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-------~~p~gia~~~dg~~ly 262 (337)
.-...++++++++|+..++-. .+|.|..+|.+......+.... .....+++++++.++.
T Consensus 191 ~~~~v~~v~wspdg~~lasgs--------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 191 STVAVTSVCWSPKGKQLAVGK--------------QNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp GGGCEEEEEECTTSSCEEEEE--------------TTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred CCCceeEEEEcCCCCEEEEEc--------------CCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 012368899999987443332 2457888887732222222111 1456788888875554
Q ss_pred EEeCCC------CEEEEEEee
Q psy4771 263 VAETMS------SRVHRYYLK 277 (337)
Q Consensus 263 va~~~~------~~I~~~~~~ 277 (337)
+...+. ..+..+++.
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EEEETTCCSSSCCEEEEEECC
T ss_pred EEccCCCccCCCCceEEEEec
Confidence 444332 246677765
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.91 Score=41.48 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=42.6
Q ss_pred ccEEEee---CCeEEEEecCc----EEEEEeC-C-ceeEEEecCccccCccccC----ccCCcceEEECC---CCcEEEE
Q psy4771 65 PEAVVKH---KGDLYMGVDGG----HILKLSG-G-KLVPVVKLGKDCYGFKYEQ----QCGRPLGIKFDK---NGALHVA 128 (337)
Q Consensus 65 P~~i~~~---~g~ly~d~~~g----~I~~~~~-~-~~~~~~~~g~~~~~~~~~~----~~~~P~Gl~~d~---~G~lyVa 128 (337)
-.+|+++ .+.+|+....| .|++.+. + .++.+. ....... .... ...+-.+|++++ .++||++
T Consensus 57 v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~-~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 57 IHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEAT-RPPAFNK-APEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp EEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECS-BCCCCCC-CC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred eEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECC-ccccCCC-cccccccccccceeEEEeCCCCCCCEEEEE
Confidence 3566663 68899776666 7888765 3 233221 0000000 0000 112344688985 5799998
Q ss_pred ECCCcEEEEEcCCCeEEEE
Q psy4771 129 DAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 129 d~~~gv~~vd~~~g~~~~l 147 (337)
....+|++-+-.+...+.+
T Consensus 135 ~~~ggl~~S~DgG~tW~~~ 153 (394)
T 3b7f_A 135 TSPQGLFRSTDHGASWEPV 153 (394)
T ss_dssp EETTEEEEESSTTSBCEEC
T ss_pred ecCCcEEEEcCCCCCeEEC
Confidence 6556788776544444443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.74 Score=45.12 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=46.3
Q ss_pred eeCCeEEEEec-CcEEEEEeC-CceeEEEecCccccC-ccccCcc-CCcceEEECC-CCc----EEEEECCCcEEEEEcC
Q psy4771 70 KHKGDLYMGVD-GGHILKLSG-GKLVPVVKLGKDCYG-FKYEQQC-GRPLGIKFDK-NGA----LHVADAYFGLYKVNVT 140 (337)
Q Consensus 70 ~~~g~ly~d~~-~g~I~~~~~-~~~~~~~~~g~~~~~-~~~~~~~-~~P~Gl~~d~-~G~----lyVad~~~gv~~vd~~ 140 (337)
+.++.+|+... +++|+.+|. .+.+.+-++...... ......| ....|+++.+ +|. ||+......|+.+|.+
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 46899997777 788999987 444433222111000 0000001 1134677742 446 9998755569999999
Q ss_pred CCeEEEEe
Q psy4771 141 TGQTEQLI 148 (337)
Q Consensus 141 ~g~~~~l~ 148 (337)
+|++..-.
T Consensus 140 TG~~~W~~ 147 (599)
T 1w6s_A 140 TGETVWKV 147 (599)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEee
Confidence 99876554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.55 Score=46.82 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=46.0
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccC-ccccCccC-CcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYG-FKYEQQCG-RPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.++.+|+...+++|+.+|..+.+.+-++...... ......|. ...+++++ +|+||+......|+.+|.++|+...-
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CCEEEEEccCCEEEEEECCCCCEeee
Confidence 46999998888899999997433333222110000 00000011 12355664 56899997555699999999987655
Q ss_pred e
Q psy4771 148 I 148 (337)
Q Consensus 148 ~ 148 (337)
.
T Consensus 147 ~ 147 (689)
T 1yiq_A 147 V 147 (689)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.67 Score=42.40 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=39.5
Q ss_pred CCeEEEEecCcEEEEEeCC--ceeEEEecCc-cccCccc------cCccCCcceEEECC--CCcEEEEECCCcEEEEEcC
Q psy4771 72 KGDLYMGVDGGHILKLSGG--KLVPVVKLGK-DCYGFKY------EQQCGRPLGIKFDK--NGALHVADAYFGLYKVNVT 140 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~-~~~~~~~------~~~~~~P~Gl~~d~--~G~lyVad~~~gv~~vd~~ 140 (337)
.+.+|+....+.|+|.+.+ .++.+..... .....+. ......-..|++|+ .++||++....+|++-+-.
T Consensus 128 ~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg 207 (394)
T 3b7f_A 128 PGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA 207 (394)
T ss_dssp TTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST
T ss_pred CCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC
Confidence 6789977777779998653 3333211100 0000000 00112235799987 3589999654567776544
Q ss_pred CCeEEEE
Q psy4771 141 TGQTEQL 147 (337)
Q Consensus 141 ~g~~~~l 147 (337)
+...+.+
T Consensus 208 G~tW~~~ 214 (394)
T 3b7f_A 208 GTDWKPL 214 (394)
T ss_dssp TSSCEEC
T ss_pred CCCceEC
Confidence 4344433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.33 Score=47.22 Aligned_cols=148 Identities=10% Similarity=0.044 Sum_probs=88.1
Q ss_pred ccEEEe--eCCeEEEEecCcEEEEEeCCcee-------EEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEE
Q psy4771 65 PEAVVK--HKGDLYMGVDGGHILKLSGGKLV-------PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLY 135 (337)
Q Consensus 65 P~~i~~--~~g~ly~d~~~g~I~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~ 135 (337)
-.++++ ++..|+++..+|+|.-|+..+.. .+..+.... .........+++.|+| +..+...+.+.
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~-----~gh~~~V~sVawSPdg-Laass~D~tVr 205 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD-----AGSKDWVTHIVWYEDV-LVAALSNNSVF 205 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC-----TTCCCCEEEEEEETTE-EEEEETTCCEE
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc-----ccccccEEEEEEcCCc-EEEEeCCCeEE
Confidence 346777 45677799999999888862211 122221000 0112457799999999 66665556688
Q ss_pred EEEcCCCeEE----EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCC
Q psy4771 136 KVNVTTGQTE----QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 136 ~vd~~~g~~~----~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~ 211 (337)
..|.++++.. .+.. + .-....++++. |...++..
T Consensus 206 lWd~~~~~~~~~~~tL~~------~---------------------------------h~~~V~svaFs--g~~LASa~- 243 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQN------A---------------------------------SRRKITDLKIV--DYKVVLTC- 243 (588)
T ss_dssp EECCCSSSSCCCEEEEEC------C---------------------------------CSSCCCCEEEE--TTEEEEEC-
T ss_pred EEECCCCccccceeeecc------c---------------------------------ccCcEEEEEEE--CCEEEEEe-
Confidence 8888766532 1211 1 01246778876 34332222
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEE--ccCCCEEEEEeCCCCEEEEE
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVEL--SADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~--~~dg~~lyva~~~~~~I~~~ 274 (337)
.|.|..+|..+++..... .....-++|++ ++|+..|.++...+-+|+.+
T Consensus 244 --------------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~ 295 (588)
T 2j04_A 244 --------------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLE 295 (588)
T ss_dssp --------------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEES
T ss_pred --------------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEee
Confidence 258888888888774444 44556688999 99997666666332245553
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.77 Score=39.90 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=64.8
Q ss_pred CcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 113 RPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
.-..++|+++|+.+++-...+ |...|.+++..+.+.. ..| --
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~----l~g---------------------------------H~ 53 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT----LTG---------------------------------HE 53 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEE----ECC---------------------------------CS
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEE----Ecc---------------------------------cc
Confidence 456899999997766654444 6666765331111110 111 01
Q ss_pred CCCccEEEcC--CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccC--CCEEEEE
Q psy4771 192 QIPNSVTVDS--DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSAD--ESFVIVA 264 (337)
Q Consensus 192 ~~pn~v~vd~--~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~d--g~~lyva 264 (337)
...+++++.+ +|++.++-.. +|.|..+|..+++. ..+...-...+.++++|+ ++.|..
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~--------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s- 118 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSY--------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV- 118 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEET--------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-
T ss_pred CCeEEEEecCCCcCCEEEEEcC--------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-
Confidence 2346777764 3665544432 45666677665532 222223345688999987 665544
Q ss_pred eCCCCEEEEEEeeC
Q psy4771 265 ETMSSRVHRYYLKG 278 (337)
Q Consensus 265 ~~~~~~I~~~~~~g 278 (337)
-...+.|..+++..
T Consensus 119 ~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 119 ASSDGKVSVVEFKE 132 (297)
T ss_dssp EETTSEEEEEEBCS
T ss_pred EECCCcEEEEEecC
Confidence 44567888888864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.22 Score=50.02 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=69.1
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+....++++++|+++++-...| |...|..++....... ..+ .
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~----l~~---------------------------------h 52 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT----LTG---------------------------------H 52 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE----ECC---------------------------------C
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee----ccC---------------------------------C
Confidence 4467889999985544433444 6666665443333221 111 1
Q ss_pred CCCCccEEEcCC--CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccC--CCEEEE
Q psy4771 191 PQIPNSVTVDSD--GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSAD--ESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~~--G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~d--g~~lyv 263 (337)
-....++++.++ |+..++-.. +|.|..+|..+++. ............++++|+ ++.+++
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~--------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s 118 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSY--------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEET--------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred cCceEEEEecCCCCCCEEEEEeC--------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE
Confidence 123577888776 765544432 45677777666642 222233456789999998 775555
Q ss_pred EeCCCCEEEEEEeeCC
Q psy4771 264 AETMSSRVHRYYLKGP 279 (337)
Q Consensus 264 a~~~~~~I~~~~~~g~ 279 (337)
+. ..+.|..+++...
T Consensus 119 gs-~dg~I~vwdl~~~ 133 (753)
T 3jro_A 119 AS-SDGKVSVVEFKEN 133 (753)
T ss_dssp EE-TTSEEEEEECCSS
T ss_pred Ee-CCCcEEEEEeecC
Confidence 54 5689999998654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.12 Score=49.92 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=88.9
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCCcceE--EECCCC-cEEEEECCCc-EEEEEc
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGRPLGI--KFDKNG-ALHVADAYFG-LYKVNV 139 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl--~~d~~G-~lyVad~~~g-v~~vd~ 139 (337)
.++++ .++.|.++..+|.|..|+..+. .....+. .......++ ++.++| +++++-+..+ |...|.
T Consensus 270 ~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~---------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 270 TTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQ---------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEE---------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred EEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEee---------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 45666 4567779999999999986321 1111110 111335677 567777 7777755555 777777
Q ss_pred CCCeEE-EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCce
Q psy4771 140 TTGQTE-QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218 (337)
Q Consensus 140 ~~g~~~-~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~ 218 (337)
.+++.. .+.. .. .......+++.|+|..+++...
T Consensus 341 ~~~~~~~~~~~---~~-----------------------------------~~~~v~~v~fsp~~~~l~s~~~------- 375 (524)
T 2j04_B 341 KDIATTKTTVS---RF-----------------------------------RGSNLVPVVYCPQIYSYIYSDG------- 375 (524)
T ss_dssp GGHHHHCEEEE---EC-----------------------------------SCCSCCCEEEETTTTEEEEECS-------
T ss_pred CCCCccccccc---cc-----------------------------------ccCcccceEeCCCcCeEEEeCC-------
Confidence 544321 1111 00 1112467899999887665543
Q ss_pred eeeeecCCccEEEEcCCCCee-EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKN-KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~-~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
++.|..+|..++.. ..+.......+.|+++|+|+.| ++-...++|..+++..
T Consensus 376 -------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l-~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 376 -------ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMV-LAGSADGSLIITNAAR 428 (524)
T ss_dssp -------SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBC-EEEETTTEEECCBSCS
T ss_pred -------CCcEEEEECcccccceeeecCCCceEEEEeCCCCCeE-EEEECCCEEEEEechH
Confidence 23566667665543 3344445567899999999754 4555567777776543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.29 E-value=1.6 Score=42.18 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=59.8
Q ss_pred cEEEEcCCC----C-eeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC------CCC-Cce-eeeecCCCC-
Q psy4771 228 RLIQYNPKT----K-KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG------PKQ-GKS-EVFIDGLPG- 293 (337)
Q Consensus 228 ~v~~~d~~~----~-~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g------~~~-~~~-~~~~~~~~g- 293 (337)
.+-++|... + .......--..|+|+-++|||++++++.....++.+|+.+. .++ .-. .+.++-..|
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 466777654 1 23344455678999999999999999999999999999862 111 111 112221112
Q ss_pred CCCceeECCCCCEEEEecCC
Q psy4771 294 LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 294 ~Pdgi~~d~dG~l~va~~~~ 313 (337)
.|-=.++|.+|+.|.+++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfid 398 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFID 398 (638)
T ss_dssp CEEEEEECSSSEEEEEETTT
T ss_pred cccEEEECCCCceEeeeeec
Confidence 37788999999999999755
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=95.15 E-value=1.9 Score=39.43 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=79.3
Q ss_pred EEe-eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 68 VVK-HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 68 i~~-~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
|.+ .++.|-++. ++.|+.|+. ++........ .......++++.++|+++++-...+ |...|.++++
T Consensus 111 l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~---------~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 111 VDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQME---------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp EEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECC---------STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEec---------CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 344 344444665 788999986 3433332221 1223467999999996665544444 8888888776
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
...... +. -.....+ ..++.+.++..
T Consensus 181 ~~~~~~------~h---------------------------------~~~v~~~--s~~~~~l~sgs------------- 206 (420)
T 4gga_A 181 RLRNMT------SH---------------------------------SARVGSL--SWNSYILSSGS------------- 206 (420)
T ss_dssp EEEEEC------CC---------------------------------SSCEEEE--EEETTEEEEEE-------------
T ss_pred EEEEEe------CC---------------------------------CCceEEE--eeCCCEEEEEe-------------
Confidence 544332 10 0112222 33344443332
Q ss_pred cCCccEEEEcCCCC--eeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 224 SGSGRLIQYNPKTK--KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 224 ~~~G~v~~~d~~~~--~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.++.+..+|.... .+..+........++.++++++.+.... ..+.|..++...
T Consensus 207 -~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~-~D~~v~i~~~~~ 261 (420)
T 4gga_A 207 -RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAP 261 (420)
T ss_dssp -TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESSC
T ss_pred -CCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee-ccccceEEeecc
Confidence 2335555554432 2233344455678899999997655544 456777777653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.54 Score=43.10 Aligned_cols=160 Identities=11% Similarity=0.128 Sum_probs=85.0
Q ss_pred ccEEEe-eC-CeEEEEecCcEEEEEeC-----CceeEEEecCccccCccc-cC--ccCCcceEE--ECCCCcEEEEECCC
Q psy4771 65 PEAVVK-HK-GDLYMGVDGGHILKLSG-----GKLVPVVKLGKDCYGFKY-EQ--QCGRPLGIK--FDKNGALHVADAYF 132 (337)
Q Consensus 65 P~~i~~-~~-g~ly~d~~~g~I~~~~~-----~~~~~~~~~g~~~~~~~~-~~--~~~~P~Gl~--~d~~G~lyVad~~~ 132 (337)
..++++ .+ ..+++...++.|..|+. ++....... . +-.... .+ .......+. +.+++.++++-...
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC-E-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE-E-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc-c-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 345566 33 45668888888877753 221111000 0 000000 00 223344455 55777555554444
Q ss_pred -cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCC
Q psy4771 133 -GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 133 -gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~ 211 (337)
.|..+|..+++....... .. .....+.++++++|...++-..
T Consensus 192 ~~i~iwd~~~~~~~~~~~~--~~-----------------------------------h~~~v~~~~~s~~~~~l~s~~~ 234 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIEN--SP-----------------------------------RHGAVSSICIDEECCVLILGTT 234 (437)
T ss_dssp SEEEEEETTTCCEEEEEEC--CG-----------------------------------GGCCEEEEEECTTSCEEEEEET
T ss_pred CeEEEEeCCCCeeeEEEcc--CC-----------------------------------CCCceEEEEECCCCCEEEEEcC
Confidence 488889877664433320 00 0124688999999875554432
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEEEc----cCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELS----ADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~----~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..+++..... .+-.....++++ +|+ .++++-...+.|..+++..
T Consensus 235 --------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 235 --------------RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp --------------TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTT
T ss_pred --------------CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCC
Confidence 457888888777653332 223344677554 455 3555566667888888753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=1.3 Score=43.91 Aligned_cols=67 Identities=16% Similarity=0.358 Sum_probs=41.3
Q ss_pred EcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccCCCEEEEEeCCC--CEEE
Q psy4771 199 VDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSADESFVIVAETMS--SRVH 272 (337)
Q Consensus 199 vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~dg~~lyva~~~~--~~I~ 272 (337)
++++| .+||..... ...++|+++|.++++. +.+...-... +.+++++++|+++.... .+|+
T Consensus 287 ~~~~g~~l~~~t~~~-----------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRD-----------APNRRLVTVDAANPGPAHWRDLIPERQQV--LTVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp EEEETTEEEEEECTT-----------CTTCEEEEEETTSCCGGGCEEEECCCSSC--EEEEEETTEEEEEEEETTEEEEE
T ss_pred EeccCCEEEEEECCC-----------CCCCEEEEEeCCCCCccccEEEecCCCCE--EEEEEECCEEEEEEEECCeeEEE
Confidence 44544 577765431 1346899999887654 4444332222 27888888888876544 3677
Q ss_pred EEEeeC
Q psy4771 273 RYYLKG 278 (337)
Q Consensus 273 ~~~~~g 278 (337)
+++++|
T Consensus 354 ~~d~~g 359 (693)
T 3iuj_A 354 QFDYEG 359 (693)
T ss_dssp EECTTS
T ss_pred EEECCC
Confidence 877764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.61 Score=41.03 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=67.6
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+....++++++|+++++-+..+ |...|..++....+.. ..|-
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~----l~gH--------------------------------- 56 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD----LRGH--------------------------------- 56 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE----EECC---------------------------------
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE----EcCC---------------------------------
Confidence 3456899999997766654444 6667776554322221 1110
Q ss_pred CCCCccEEEcC--CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccC--CCEEEE
Q psy4771 191 PQIPNSVTVDS--DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSAD--ESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~--~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~d--g~~lyv 263 (337)
-...+++++.+ +|++.++-. .+|.|..+|..+++. ..+...-...+.++++|+ +. +++
T Consensus 57 ~~~V~~v~~~~~~~~~~l~s~s--------------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~la 121 (316)
T 3bg1_A 57 EGPVWQVAWAHPMYGNILASCS--------------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILA 121 (316)
T ss_dssp SSCEEEEEECCGGGSSCEEEEE--------------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEE
T ss_pred CccEEEEEeCCCCCCCEEEEEE--------------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEE
Confidence 12356777764 365444433 245777777776532 222223345689999998 54 555
Q ss_pred EeCCCCEEEEEEeeC
Q psy4771 264 AETMSSRVHRYYLKG 278 (337)
Q Consensus 264 a~~~~~~I~~~~~~g 278 (337)
+-...+.|..+++..
T Consensus 122 sgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 122 CGSSDGAISLLTYTG 136 (316)
T ss_dssp EECSSSCEEEEEECS
T ss_pred EEcCCCCEEEEecCC
Confidence 556667888888754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.29 Score=49.06 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=56.4
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC----
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS---- 268 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~---- 268 (337)
..+++++|||+ |.++..... .....|+.+|.++|+.......-....+++++|| +.|+++....
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G----------~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGG----------SDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETT----------CSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEeEEECCCCCEEEEEEcCCC----------CceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 46788999997 433322110 0113689999988876432111111257899999 8888876433
Q ss_pred ---------CEEEEEEeeCCCCCceeeeecC-CCCCCCceeECCCCC
Q psy4771 269 ---------SRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 ---------~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~dG~ 305 (337)
.+|+++++.+.......++... .+..-.++.+++||+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~ 280 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR 280 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC
Confidence 3588877643321122232221 111234678889987
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=94.87 E-value=1.6 Score=43.50 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=56.6
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC--e-eEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK--K-NKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~--~-~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
..++.+++||+ |+++..... +....|+.+|.+++ + .+.+......-... +++||+.||+....
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~----------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~ 338 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGT----------DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA 338 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTT----------CSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred EEEEEECCCCCEEEEEEEccC----------CCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC
Confidence 45788899996 554432210 01336788887766 4 55555443322333 45888888876542
Q ss_pred -CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 268 -SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 268 -~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..+|+++++++.. ...+.++........+++++ ++.++++.
T Consensus 339 ~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~ 380 (741)
T 1yr2_A 339 PLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASY 380 (741)
T ss_dssp TTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEE
T ss_pred CCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEE
Confidence 4679999986532 23333333222223345555 34444443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.47 E-value=2.9 Score=40.61 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=44.1
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEec--CccccCccccCccC-CcceEEECCCCcEEEEECCCcEEEEEcCCCeEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKL--GKDCYGFKYEQQCG-RPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQ 146 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~--g~~~~~~~~~~~~~-~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~ 146 (337)
+.++.+|+....++|+.+|..+.+.+-++ ..... ....|. ...+++++ +++||+......|+.+|.++|+...
T Consensus 66 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~---~~~~~~~~~~g~a~~-~~~v~~~t~dg~l~AlD~~TG~~~W 141 (582)
T 1flg_A 66 VSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDD---IRPCCDVVNRGAAIY-GDKVFFGTLDASVVALNKNTGKVVW 141 (582)
T ss_dssp EETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTT---CCCSSCSCCCCCEEE-TTEEEEEETTTEEEEEESSSCCEEE
T ss_pred EECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcc---cccccccCCCccEEE-CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 46899997776555999987332222221 11000 000111 12455663 5689998765669999999998765
Q ss_pred Ee
Q psy4771 147 LI 148 (337)
Q Consensus 147 l~ 148 (337)
-.
T Consensus 142 ~~ 143 (582)
T 1flg_A 142 KK 143 (582)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.46 E-value=2.5 Score=37.55 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=32.1
Q ss_pred EEEe-eCCeEEEEecCcEEEEEeC-C-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEE
Q psy4771 67 AVVK-HKGDLYMGVDGGHILKLSG-G-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVN 138 (337)
Q Consensus 67 ~i~~-~~g~ly~d~~~g~I~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd 138 (337)
.|+. .++.+|+....+.|+|-.. | .++.+. . .......+++++++|++|++....++++-+
T Consensus 126 ~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~-~----------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~ 189 (327)
T 2xbg_A 126 LIKALGNGSAEMITNVGAIYRTKDSGKNWQALV-Q----------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTW 189 (327)
T ss_dssp EEEEEETTEEEEEETTCCEEEESSTTSSEEEEE-C----------SCCCCEEEEEECTTSCEEEEETTSSEEEEE
T ss_pred EEEEECCCCEEEEeCCccEEEEcCCCCCCEEee-c----------CCCcceEEEEEcCCCcEEEEECCCcEEEEe
Confidence 4444 4566664445566666543 2 233321 0 111234678888888877765434455543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.72 Score=44.30 Aligned_cols=140 Identities=8% Similarity=-0.056 Sum_probs=76.4
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeE--EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQT--EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~--~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
....++++.+++.|+.+.....|...|.+++.. ..+..
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~---------------------------------------- 306 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQV---------------------------------------- 306 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEEC----------------------------------------
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeec----------------------------------------
Confidence 446689998776665555334477888765421 11110
Q ss_pred CCCCCccE--EEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEecccc--ceeeEEEccCCCEEEE
Q psy4771 190 KPQIPNSV--TVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLH--FANGVELSADESFVIV 263 (337)
Q Consensus 190 ~~~~pn~v--~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~--~p~gia~~~dg~~lyv 263 (337)
--...++| ++.++| .+.+|-+. +|.|..+|..+++.. .+..... ....++++|+++. ++
T Consensus 307 H~~~V~sv~~~~s~~g~~~laS~S~--------------D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~ 371 (524)
T 2j04_B 307 HDSYILSVSTAYSDFEDTVVSTVAV--------------DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YI 371 (524)
T ss_dssp SSSCEEEEEEECCTTSCCEEEEEET--------------TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE-EE
T ss_pred ccccEEEEEEEcCCCCCeEEEEecc--------------CCeEEEEECCCCCcccccccccccCcccceEeCCCcCe-EE
Confidence 01224566 345666 66555443 456777776554321 1211111 2467999999975 55
Q ss_pred EeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEE
Q psy4771 264 AETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309 (337)
Q Consensus 264 a~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va 309 (337)
+....+.|..+++..... ...+.. ..+....+++.++|.+.++
T Consensus 372 s~~~d~tv~lwd~~~~~~--~~~l~g-H~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAFA--VHPLVS-RETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EECSSSEEEEEETTCTTC--CEEEEE-CSSCEEEEECCSSCCBCEE
T ss_pred EeCCCCcEEEEECccccc--ceeeec-CCCceEEEEeCCCCCeEEE
Confidence 555667888887653221 122222 2233567777777764444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.14 Score=47.89 Aligned_cols=70 Identities=9% Similarity=0.026 Sum_probs=47.6
Q ss_pred CCccEEEcCC-CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 193 IPNSVTVDSD-GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 193 ~pn~v~vd~~-G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
..+++++.++ ++++++-.. +|.|..+|..+++.... ...-.....++++|||+.|+++. ..+.
T Consensus 151 ~V~~v~~~p~~~~~las~s~--------------Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~ 215 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCLA--------------DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGT 215 (434)
T ss_dssp SEEEEEECSSCTTEEEEEET--------------TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSC
T ss_pred ceEEEEECCCCCCEEEEEEC--------------CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCc
Confidence 4678899987 666654432 45777788776643222 22234678999999998777776 4567
Q ss_pred EEEEEee
Q psy4771 271 VHRYYLK 277 (337)
Q Consensus 271 I~~~~~~ 277 (337)
|..++.+
T Consensus 216 v~iwd~~ 222 (434)
T 2oit_A 216 VVQYLPT 222 (434)
T ss_dssp EEEECTT
T ss_pred EEEEccC
Confidence 8888765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=93.72 E-value=1.8 Score=39.80 Aligned_cols=69 Identities=7% Similarity=-0.062 Sum_probs=39.5
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
++.+++..+++...++.|..|+..+...+..+. ........+.++. ..++.+.....|..+|..+++..
T Consensus 261 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN---------GHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc---------CCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEE
Confidence 444466677788888988888864333332221 1113345677742 24444443345888888766543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.57 Score=47.12 Aligned_cols=101 Identities=8% Similarity=0.019 Sum_probs=57.1
Q ss_pred CCccEEEc-CCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC-eeEEEecccc-ceeeEEEccCCCEEEEEeCCC
Q psy4771 193 IPNSVTVD-SDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK-KNKVLIANLH-FANGVELSADESFVIVAETMS 268 (337)
Q Consensus 193 ~pn~v~vd-~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~-~~~~~~~~~~-~p~gia~~~dg~~lyva~~~~ 268 (337)
...+.+++ |||+ |.++..... .....|+.+|.+++ +. +.+.+. ...+++++|||+.|+++....
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G----------~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSG----------NEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSS----------SSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCC----------CceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECC
Confidence 34678899 9997 444432211 01125899998888 52 111111 135789999998887765431
Q ss_pred ----CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 ----SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 ----~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
.+|+++++.++......++.+....+-.++.+++||+
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~ 283 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTN 283 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSS
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCC
Confidence 3688887754322223333322222334567888887
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.11 E-value=3.7 Score=35.08 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCeEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l 147 (337)
++.|-++ .++.|..|+.. +........ .....-..+++.++|+.+++-...+ |...|.++++....
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~---------~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGDILQLLQME---------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEEEEEECC---------STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEEEEEec---------CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 4433344 47888888863 332222221 1223457899999997776655555 77788887765443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=1.1 Score=44.35 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=60.6
Q ss_pred CCccEEEcCCCc--EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc--eeeEEEccCCCEEEEEeCC-
Q psy4771 193 IPNSVTVDSDGM--VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF--ANGVELSADESFVIVAETM- 267 (337)
Q Consensus 193 ~pn~v~vd~~G~--lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~--p~gia~~~dg~~lyva~~~- 267 (337)
...++++++||+ +|..+.+.. ....|+.+|.++|+.... .+.. ..+++|+ ||+.||++...
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~-----------~~~~i~v~dl~tg~~~~~--~~~~~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGS-----------DWREIHLMDVESKQPLET--PLKDVKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSC-----------CEEEEEEEETTTCSEEEE--EEEEEESCCCEEE-TTTEEEEEESSC
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----------ceEEEEEEECCCCCCCcc--ccCCceeccEEEe-CCCEEEEEEecC
Confidence 456789999997 444443321 113788999998875332 2222 2578999 99988877644
Q ss_pred -----------CCEEEEEEeeCCCCCceeeeecCC--CCCCCceeECCCCC-EEEEe
Q psy4771 268 -----------SSRVHRYYLKGPKQGKSEVFIDGL--PGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 268 -----------~~~I~~~~~~g~~~~~~~~~~~~~--~g~Pdgi~~d~dG~-l~va~ 310 (337)
..+|+++++.........++.... +..-.++.+++||+ ++++.
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 256888876433222223332211 11123677888997 44443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.84 E-value=3.7 Score=41.14 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=45.5
Q ss_pred ccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCee--EEEec--cccceeeEEEccCCCEEEEEeC--C
Q psy4771 195 NSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN--KVLIA--NLHFANGVELSADESFVIVAET--M 267 (337)
Q Consensus 195 n~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~--~~~~~--~~~~p~gia~~~dg~~lyva~~--~ 267 (337)
.++++++||+ |+++..... .....|++++..+++. ..+.. .-.+-.++.+++||++|+++.. .
T Consensus 224 ~~~~WspDg~~l~y~~~d~~----------~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 293 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDET----------LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE 293 (751)
T ss_dssp SCCEECSSTTEEEEEEECTT----------CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred eeEEEecCCCEEEEEEECCC----------CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence 5678889885 666543211 0012678888766542 22221 1234457889999999887653 3
Q ss_pred CCEEEEEEeeCC
Q psy4771 268 SSRVHRYYLKGP 279 (337)
Q Consensus 268 ~~~I~~~~~~g~ 279 (337)
...|+.++++++
T Consensus 294 ~~~l~~~d~~~~ 305 (751)
T 2xe4_A 294 TAEVHLLDLRKG 305 (751)
T ss_dssp CEEEEEEESSSC
T ss_pred CceEEEEECCCC
Confidence 467888888654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=91.71 E-value=7.5 Score=35.25 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCccEEEEcCCCCeeEEEecc-cccee-eEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 225 GSGRLIQYNPKTKKNKVLIAN-LHFAN-GVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~-~~~p~-gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.+|.|..+|..+++......+ ..... .++|+|||++|+- -...++|..+++
T Consensus 303 ~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS-GS~D~TIklWd~ 355 (356)
T 2w18_A 303 TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA-GQKDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE-ECTTSCEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE-EECCCcEEEecC
Confidence 456888888888876544433 23344 4899999986554 455677777664
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=91.55 E-value=8 Score=35.26 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=40.8
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEE
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTE 145 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~ 145 (337)
++..++..+.++..+|.|..|+..+.+....+. ...+....+++ +++++++-... .|...|.++++..
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---------GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEEC---------CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc---------CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 344456667788999999999874433332221 11234567777 45454443344 4888888777644
Q ss_pred E
Q psy4771 146 Q 146 (337)
Q Consensus 146 ~ 146 (337)
.
T Consensus 207 ~ 207 (435)
T 1p22_A 207 N 207 (435)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=90.98 E-value=8.7 Score=34.65 Aligned_cols=52 Identities=19% Similarity=0.051 Sum_probs=35.9
Q ss_pred CCccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 225 GSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+|.|..+|..+++... ....-..-..++|+|||+.|.++. ...+..+++.|
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as--~~Gv~lvrL~g 389 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMG 389 (393)
T ss_dssp TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE--SSEEEEEEEGG
T ss_pred CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeC
Confidence 45688888887765433 333334568899999999887776 45677777654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=90.07 E-value=9.5 Score=33.64 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=47.5
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
+.++++.+++++|++.. .|.|++-+-.+...+.+..+ .....+++++++++.+.+.. .+.++
T Consensus 124 ~~~i~~~~~~~~~~~~~---------------~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~--~G~~~ 186 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITN---------------VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS--RGSFY 186 (327)
T ss_dssp EEEEEEEETTEEEEEET---------------TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET--TSSEE
T ss_pred eEEEEEECCCCEEEEeC---------------CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC--CCcEE
Confidence 45666666667665542 23555543222233333322 12346788888886443433 34565
Q ss_pred EEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 273 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 273 ~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
+-.-.++.. -+.+....+.....++++++|++|++..
T Consensus 187 ~S~d~gG~t--W~~~~~~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 187 STWEPGQTA--WEPHNRTTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEECTTCSS--CEEEECCSSSCEEEEEECTTSCEEEEET
T ss_pred EEeCCCCCc--eeECCCCCCCccceeEECCCCCEEEEeC
Confidence 544221211 1111111122234667777778777653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=87.57 E-value=18 Score=35.30 Aligned_cols=82 Identities=21% Similarity=0.080 Sum_probs=52.0
Q ss_pred ceEEECCCCcEEEEECCC--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 115 LGIKFDKNGALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~~~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
.+.++..+|+|||.-... .+.++|+.+++-..+... . ...
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~----~----------------------------------~~R 287 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM----Q----------------------------------VAR 287 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC----S----------------------------------SCC
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCC----C----------------------------------ccc
Confidence 357777889999996432 499999987766554321 0 112
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL 242 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~ 242 (337)
.-..+++-++|+||+.-....- ......+.+||+.+++.+.+
T Consensus 288 ~~~s~~~~~dg~iyv~GG~~~~--------~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGGSWSG--------GVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp SSCEEEECTTSCEEEECCCCCS--------SSCCCCEEEEETTTTEEEEE
T ss_pred cccceEEecCCeEEEEeCcccC--------CcccccceEeCCCCCcceeC
Confidence 2345666678899987652110 01123688999998887665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.49 E-value=17 Score=31.27 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce---eeEEEccCCCEEEEEeC-----CCCEEEE
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA---NGVELSADESFVIVAET-----MSSRVHR 273 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyva~~-----~~~~I~~ 273 (337)
+++||+.-.... ......+++||+.+++.+.+. .+..+ ..+++. ++ .||+.-. ..+.+++
T Consensus 200 ~~~i~v~GG~~~---------~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~ 267 (306)
T 3ii7_A 200 KDKIFAVGGQNG---------LGGLDNVEYYDIKLNEWKMVS-PMPWKGVTVKCAAV-GS-IVYVLAGFQGVGRLGHILE 267 (306)
T ss_dssp TTEEEEECCEET---------TEEBCCEEEEETTTTEEEECC-CCSCCBSCCEEEEE-TT-EEEEEECBCSSSBCCEEEE
T ss_pred CCEEEEEeCCCC---------CCCCceEEEeeCCCCcEEECC-CCCCCccceeEEEE-CC-EEEEEeCcCCCeeeeeEEE
Confidence 567887643211 011237899999988876553 22222 223332 44 6888754 2367888
Q ss_pred EEeeC
Q psy4771 274 YYLKG 278 (337)
Q Consensus 274 ~~~~g 278 (337)
|+++.
T Consensus 268 yd~~~ 272 (306)
T 3ii7_A 268 YNTET 272 (306)
T ss_dssp EETTT
T ss_pred EcCCC
Confidence 88753
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.7 Score=42.02 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=9.8
Q ss_pred CccEEEEcCCCCee
Q psy4771 226 SGRLIQYNPKTKKN 239 (337)
Q Consensus 226 ~G~v~~~d~~~~~~ 239 (337)
+|.|+.+|.++|+.
T Consensus 182 dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 182 DGLVVTVDSESGDV 195 (369)
T ss_dssp SCEEEEECTTTCCE
T ss_pred CCEEEEEECCCCcE
Confidence 35777888777765
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=82.88 E-value=26 Score=31.38 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=34.4
Q ss_pred eEEEcc-CCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 251 GVELSA-DESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 251 gia~~~-dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
+.++.+ .++.+.++-...++|..++...+... ..+.. .......+++++||+++++..
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~--~~~~~-~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSN--SIPIQ-LGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCC--EEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEE--EEecC-CCCcEEEEEEcCCCCEEEEEe
Confidence 344443 44456666667789999887643221 22222 122246899999999766654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.47 E-value=4.4 Score=36.55 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=13.7
Q ss_pred CCeEEEEecCcEEEEEeC
Q psy4771 72 KGDLYMGVDGGHILKLSG 89 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~ 89 (337)
++.+|+...+|+|+-++.
T Consensus 10 ~~~V~v~t~dG~l~Ald~ 27 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR 27 (339)
T ss_dssp EEEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCeEEEEEC
Confidence 557777778888888876
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=81.56 E-value=25 Score=30.36 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=19.6
Q ss_pred CCCcEEEEECC-------CcEEEEEcCCCeEEEEe
Q psy4771 121 KNGALHVADAY-------FGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 121 ~~G~lyVad~~-------~gv~~vd~~~g~~~~l~ 148 (337)
-+|.|||.-.. ..++++|+++.+-+.+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~ 191 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA 191 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC
Confidence 46789987421 23899999888766664
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.43 E-value=25 Score=30.37 Aligned_cols=28 Identities=7% Similarity=-0.080 Sum_probs=19.2
Q ss_pred CCCcEEEEECC-------CcEEEEEcCCCeEEEEe
Q psy4771 121 KNGALHVADAY-------FGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 121 ~~G~lyVad~~-------~gv~~vd~~~g~~~~l~ 148 (337)
-++.|||.-.. ..+.++|+.+.+-+.+.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~ 181 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA 181 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC
Confidence 35689998532 23889999887766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 337 | ||||
| d1v04a_ | 340 | b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO | 8e-20 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 2e-05 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 0.002 |
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 86.7 bits (214), Expect = 8e-20
Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 27/282 (9%)
Query: 56 KLFENEIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDC----YGFKYEQQC 111
L + +G E DL + +G + SG K ++ D ++
Sbjct: 28 NLVKGIDNGSE-------DLEILPNGLAFI-SSGLKYPGIMSFDPDKSGKILLMDLNEKE 79
Query: 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 171
++ N + F + ++ + + G+ + + +
Sbjct: 80 PAVSELEIIGNTLD---ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK 136
Query: 172 QTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS--GSGRL 229
+ I N + Y ++ + + G
Sbjct: 137 S-------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLAWS 188
Query: 230 IQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289
+V+ FANG+ +S D +V +AE ++ ++H Y +
Sbjct: 189 FVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 248
Query: 290 GLPGLPDNVKRDSKGNFLVSLVCPVEQPSEQAGNIRDPAGAQ 331
L DN+ D L + C + +P G++
Sbjct: 249 -FDTLVDNISVDPVTGDLW-VGCHPNGMRIFFYDAENPPGSE 288
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)
Query: 116 GIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-- 172
G+ FD+ G L + D + G ++K+N T + ++ P ++ + DG+
Sbjct: 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKAN----PAAIKIHKDGRLF 96
Query: 173 ------TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS 226
T + + D + I + T + + Y + T+
Sbjct: 97 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 156
Query: 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP-----KQ 281
G + +P + +I N+ ANG+ LS DE + V ET ++R+HR L+
Sbjct: 157 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF 216
Query: 282 GKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
G + + PD+ DS N V+
Sbjct: 217 GATIPYYFTGHEGPDSCCIDSDDNLYVA 244
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.002
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 180 ISMDT-EIDGAKPQIPNSVTVDSD---GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK 235
+++D E P + N V +D++ +YWSD S + S +L + +
Sbjct: 15 MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR---------MICSTQLDRAHGV 65
Query: 236 TKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ 281
+ + V+ ++ +G+ + S + +++ V KG K+
Sbjct: 66 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.94 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.93 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.9 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.89 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 99.82 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.81 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.78 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.78 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.73 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.73 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.71 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.68 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.62 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.61 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.57 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.5 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.42 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.35 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.26 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.05 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.77 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.75 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.69 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.65 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.65 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.64 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.6 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.6 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.58 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.57 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.49 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.47 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.42 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.33 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.3 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.23 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.2 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.06 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.99 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.94 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.92 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.68 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.6 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.52 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.46 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.42 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.38 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.19 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.09 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.06 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 96.65 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.43 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.43 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.35 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.33 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.3 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.3 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.22 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.01 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 95.71 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.68 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 95.3 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.1 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.99 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.57 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 94.46 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 94.17 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.81 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 93.71 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.1 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.08 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 92.83 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.62 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.56 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 90.89 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 90.72 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 90.5 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 84.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 83.26 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 82.85 |
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.94 E-value=5.6e-26 Score=206.30 Aligned_cols=216 Identities=24% Similarity=0.341 Sum_probs=156.4
Q ss_pred ceeccCcccCccEEEe-eCCeEE-EEec-------CcEEEEEeCCc-eeEEEecCccccCccccCccCCcceEEECCCC-
Q psy4771 55 EKLFENEIHGPEAVVK-HKGDLY-MGVD-------GGHILKLSGGK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG- 123 (337)
Q Consensus 55 ~~~~~g~~~~P~~i~~-~~g~ly-~d~~-------~g~I~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G- 123 (337)
+++.++ +.+||++++ .+|.+| ++.. +|+|+|+++.+ ...+...... ....+.|.||+++++|
T Consensus 11 ~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~------~~~~g~P~Gl~~~~dg~ 83 (314)
T d1pjxa_ 11 TKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------NGYGGIPAGCQCDRDAN 83 (314)
T ss_dssp EEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------TTEECCEEEEEECSSSS
T ss_pred EEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcc------ccCCCcceeEEEeCCCC
Confidence 334444 678999999 688999 5433 57899999732 2222111111 1334679999999998
Q ss_pred cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC
Q psy4771 124 ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 203 (337)
Q Consensus 124 ~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G 203 (337)
.|||+|..+++++++++++....+.. ..+| .+++.||++++|++|
T Consensus 84 ~l~vad~~~~i~~~~~~g~~~~~~~~---~~~g--------------------------------~~~~~pndl~~d~~G 128 (314)
T d1pjxa_ 84 QLFVADMRLGLLVVQTDGTFEEIAKK---DSEG--------------------------------RRMQGCNDCAFDYEG 128 (314)
T ss_dssp EEEEEETTTEEEEEETTSCEEECCSB---CTTS--------------------------------CBCBCCCEEEECTTS
T ss_pred EEEEEECCCeEEEEeCCCcEEEEEec---cccc--------------------------------cccCCCcEEEECCCC
Confidence 68999988889999998665444332 2222 267889999999999
Q ss_pred cEEEEcCCCCccCceee-eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCC----EEEEEeCCCCEEEEEEeeC
Q psy4771 204 MVYWSDSSTKYKSGLFE-GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES----FVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 204 ~lyvtd~~~~~~~~~~~-~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~----~lyva~~~~~~I~~~~~~g 278 (337)
++||||+.......... ......|+||+++++ ++...+..++..||||+++++++ +|||+++..++|++|++++
T Consensus 129 ~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~ 207 (314)
T d1pjxa_ 129 NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG 207 (314)
T ss_dssp CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred CEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccC
Confidence 99999987543111111 124567899999986 56667778899999999998875 7999999999999999874
Q ss_pred C-CCCceeeeec---CCCCCCCceeECCCCCEEEEecCC
Q psy4771 279 P-KQGKSEVFID---GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 279 ~-~~~~~~~~~~---~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
. .....+++.+ ...+.||||++|++|+||||.+..
T Consensus 208 ~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~ 246 (314)
T d1pjxa_ 208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC
Confidence 3 3445556554 123469999999999999999766
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.2e-24 Score=197.88 Aligned_cols=196 Identities=23% Similarity=0.293 Sum_probs=147.3
Q ss_pred CccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-----CcEEE
Q psy4771 64 GPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-----FGLYK 136 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-----~gv~~ 136 (337)
..|++++ .+|.|| +|..+++|+|+++........+ ......|+||+++++|+||||+.. .+++.
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~---------~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~ 111 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 111 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE---------eCCCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence 4578888 567788 9999999999997332111111 133467999999999999999743 24888
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccC
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKS 216 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~ 216 (337)
++..++.+..+... . .....||+++++++|++||+|.....
T Consensus 112 ~~~~~~~~~~~~~~-----~--------------------------------~~~~~~nd~~~d~~G~l~vtd~~~~~-- 152 (319)
T d2dg1a1 112 ATENGDNLQDIIED-----L--------------------------------STAYCIDDMVFDSKGGFYFTDFRGYS-- 152 (319)
T ss_dssp ECTTSCSCEEEECS-----S--------------------------------SSCCCEEEEEECTTSCEEEEECCCBT--
T ss_pred EcCCCceeeeeccC-----C--------------------------------CcccCCcceeEEeccceeeccccccc--
Confidence 88887776665531 0 13567999999999999999976421
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC-CCce---e-eeecCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK-QGKS---E-VFIDGL 291 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~-~~~~---~-~~~~~~ 291 (337)
....|.+++++++++.++.+..++..||||++++|+++|||+++..++|++|+++... .... . ......
T Consensus 153 ------~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~ 226 (319)
T d2dg1a1 153 ------TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 226 (319)
T ss_dssp ------TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred ------ccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCC
Confidence 2356789999999888888888999999999999999999999999999999997432 1111 1 111122
Q ss_pred CCCCCceeECCCCCEEEEecCC
Q psy4771 292 PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 292 ~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.+.||||++|++|+||||.+..
T Consensus 227 ~~~PdGl~vD~~G~l~Va~~~~ 248 (319)
T d2dg1a1 227 HEGPDSCCIDSDDNLYVAMYGQ 248 (319)
T ss_dssp SSEEEEEEEBTTCCEEEEEETT
T ss_pred ccceeeeeEcCCCCEEEEEcCC
Confidence 2359999999999999999876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.90 E-value=4.5e-23 Score=185.29 Aligned_cols=194 Identities=20% Similarity=0.220 Sum_probs=149.6
Q ss_pred eccCcccCccEEEeeCCeEE-EEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcE
Q psy4771 57 LFENEIHGPEAVVKHKGDLY-MGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGL 134 (337)
Q Consensus 57 ~~~g~~~~P~~i~~~~g~ly-~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv 134 (337)
|.||.+|.++ ++.|| +|+.+++|+|+++. +...+..+ ...|.+++++++|+|||+. .+|+
T Consensus 19 LgEgp~wd~~-----~~~l~wvDi~~~~I~r~d~~~g~~~~~~~------------~~~~~~i~~~~dg~l~va~-~~gl 80 (295)
T d2ghsa1 19 LGEGPTFDPA-----SGTAWWFNILERELHELHLASGRKTVHAL------------PFMGSALAKISDSKQLIAS-DDGL 80 (295)
T ss_dssp BEEEEEEETT-----TTEEEEEEGGGTEEEEEETTTTEEEEEEC------------SSCEEEEEEEETTEEEEEE-TTEE
T ss_pred eeeCCeEECC-----CCEEEEEECCCCEEEEEECCCCeEEEEEC------------CCCcEEEEEecCCCEEEEE-eCcc
Confidence 4567666554 66666 99999999999973 32222222 2457899999999999996 4789
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCc
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY 214 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~ 214 (337)
+++|+++++++.+... ..+ .+.+.+|++++|++|++|+++.....
T Consensus 81 ~~~d~~tg~~~~l~~~---~~~--------------------------------~~~~~~nd~~vd~~G~iw~~~~~~~~ 125 (295)
T d2ghsa1 81 FLRDTATGVLTLHAEL---ESD--------------------------------LPGNRSNDGRMHPSGALWIGTMGRKA 125 (295)
T ss_dssp EEEETTTCCEEEEECS---STT--------------------------------CTTEEEEEEEECTTSCEEEEEEETTC
T ss_pred EEeecccceeeEEeee---ecC--------------------------------CCcccceeeEECCCCCEEEEeccccc
Confidence 9999999999888752 111 14567999999999999999875321
Q ss_pred cCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC---CCceeeeec--
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK---QGKSEVFID-- 289 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~---~~~~~~~~~-- 289 (337)
....|.+++++ .++.+.+..++..|||+++++|++.+|++++..++|++|+++... .+....+.+
T Consensus 126 --------~~~~g~l~~~~--~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~ 195 (295)
T d2ghsa1 126 --------ETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST 195 (295)
T ss_dssp --------CTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred --------cccceeEeeec--CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC
Confidence 23456788876 467778888899999999999999999999999999999997532 234455543
Q ss_pred CCCCCCCceeECCCCCEEEEecCC
Q psy4771 290 GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 290 ~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+..+.|||+++|++|+||||.+.+
T Consensus 196 ~~~g~pdG~~vD~~GnlWva~~~~ 219 (295)
T d2ghsa1 196 GIKGGMDGSVCDAEGHIWNARWGE 219 (295)
T ss_dssp TSSSEEEEEEECTTSCEEEEEETT
T ss_pred cccccccceEEcCCCCEEeeeeCC
Confidence 345679999999999999999766
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=9e-22 Score=173.20 Aligned_cols=217 Identities=21% Similarity=0.281 Sum_probs=152.6
Q ss_pred cCccEEEe-eCCeEE-EEe-cCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEc
Q psy4771 63 HGPEAVVK-HKGDLY-MGV-DGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNV 139 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~-~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~ 139 (337)
.+|.+|++ .+|.+| ++. .+++|++++.++....... ......|.|++++++|+|||+|...++.++..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~ 84 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---------FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA 84 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC---------CCSCCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec---------cCCccCceEEEEcCCCCEEEeeeeeceeeeee
Confidence 48999999 688888 665 4578999987543322111 13346799999999999999998777777765
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc------cCCCCCCCCccEEEcCCCcEEEEc
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE------IDGAKPQIPNSVTVDSDGMVYWSD 209 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~------~~~~~~~~pn~v~vd~~G~lyvtd 209 (337)
.+........ .+. ..|.+++++++|+++ ..+.+..+... .....+..|++++++++|++|+++
T Consensus 85 ~~~~~~~~~~-----~~~--~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~ 157 (260)
T d1rwia_ 85 GSNNQTVLPF-----DGL--NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTD 157 (260)
T ss_dssp TCSCCEECCC-----CSC--CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEE
T ss_pred eccceeeeee-----eee--eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeec
Confidence 4433322221 111 258999999999998 22345544421 112246789999999999999999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
... ++|+++|+++....... ..+..|+||+++++|+ |||++..+++|.+|+.++.. ...+.
T Consensus 158 ~~~--------------~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~---~~~~~ 219 (260)
T d1rwia_ 158 TDN--------------NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT---STVLP 219 (260)
T ss_dssp GGG--------------TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSC---CEECC
T ss_pred ccc--------------ccccccccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCe---EEEEc
Confidence 753 48999998765444433 5688999999999985 99999999999999876532 22222
Q ss_pred cCCCCCCCceeECCCCCEEEEecCC
Q psy4771 289 DGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 289 ~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
...-..|.+|++|++|+|||+....
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCC
Confidence 2112359999999999999998765
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.82 E-value=2.7e-19 Score=163.23 Aligned_cols=213 Identities=19% Similarity=0.238 Sum_probs=146.3
Q ss_pred eccCcccCccEEEe-eCCeEEEEec-------------CcEEEEEeCC----ceeEEEecCccccCccccCccCCcceEE
Q psy4771 57 LFENEIHGPEAVVK-HKGDLYMGVD-------------GGHILKLSGG----KLVPVVKLGKDCYGFKYEQQCGRPLGIK 118 (337)
Q Consensus 57 ~~~g~~~~P~~i~~-~~g~ly~d~~-------------~g~I~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~P~Gl~ 118 (337)
..+|...|||+|++ .+|.+|..+. .|+|+.++.. +...+...+.. + ....-+|+||.
T Consensus 29 ~i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~---~--~~~~f~PhGi~ 103 (340)
T d1v04a_ 29 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT---L--DISSFNPHGIS 103 (340)
T ss_dssp ECTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSS---S--CGGGCCEEEEE
T ss_pred EcCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCC---C--CCcceecccee
Confidence 44676779999999 7888883332 4788888752 12222111111 0 11224699987
Q ss_pred E--CCCC--cEEEEECC-C--c--EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 119 F--DKNG--ALHVADAY-F--G--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 119 ~--d~~G--~lyVad~~-~--g--v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
+ +++| .|||.+-. . . ++.++.++.+.+.+.. ... .
T Consensus 104 l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~----v~~--------------------------------~ 147 (340)
T d1v04a_ 104 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT----IRH--------------------------------K 147 (340)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE----ECC--------------------------------T
T ss_pred EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEee----cCC--------------------------------c
Confidence 6 5666 67887631 1 1 6677766655544432 111 2
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCc---eeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSG---LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~---~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.+..||||++..+|.+|+|+........ +......+.|.++.+|+ ++.+++.+++.+||||++++|+++|||+++
T Consensus 148 ~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeC
Confidence 4678999999999999999765432111 11122456788999986 456778889999999999999999999999
Q ss_pred CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC-CCCEEEEecCC
Q psy4771 267 MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-KGNFLVSLVCP 313 (337)
Q Consensus 267 ~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~-dG~l~va~~~~ 313 (337)
.+.+|++|++++........+.+ +++.||||.+|+ +|.+|++.+..
T Consensus 226 ~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~~p~ 272 (340)
T d1v04a_ 226 LAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 272 (340)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEECCc
Confidence 99999999998754444444444 889999999995 78999998654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.81 E-value=3.1e-18 Score=153.45 Aligned_cols=181 Identities=20% Similarity=0.268 Sum_probs=133.9
Q ss_pred ccEEEe-eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 65 PEAVVK-HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 65 P~~i~~-~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
||++++ .+|.|| ++..+++|+++++ ++...+. ...+.|.|++++++|+|||++...+ +.+++..
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~------------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA------------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE------------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEE------------cCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 889999 788888 8999999999998 4444433 2336799999999999999986543 6555543
Q ss_pred --CCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCce
Q psy4771 141 --TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218 (337)
Q Consensus 141 --~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~ 218 (337)
.+....+... . ....+|+++++++|++|+++...
T Consensus 98 ~~~~~~~~~~~~---~-----------------------------------~~~~~n~i~~~~~g~~~v~~~~~------ 133 (302)
T d2p4oa1 98 KSDGTVETLLTL---P-----------------------------------DAIFLNGITPLSDTQYLTADSYR------ 133 (302)
T ss_dssp CTTSCEEEEEEC---T-----------------------------------TCSCEEEEEESSSSEEEEEETTT------
T ss_pred ccccceeecccc---C-----------------------------------CccccceeEEccCCCEEeecccc------
Confidence 3445554431 1 24568999999999999999763
Q ss_pred eeeeecCCccEEEEcCCCCeeEEEe-----------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC-CCceee
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKNKVLI-----------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK-QGKSEV 286 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~~~~~-----------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~-~~~~~~ 286 (337)
+.++++|+.++...... .....++|++++ ++++|++++..++|++++.++.. ......
T Consensus 134 --------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (302)
T d2p4oa1 134 --------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEI 203 (302)
T ss_dssp --------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred --------ccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccccccccccccc
Confidence 47888887776654432 224568888775 45899999999999999997532 333444
Q ss_pred eecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 287 FIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 287 ~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+.+ . +.||||++|++|++||+....
T Consensus 204 ~~~-~-~~pdgia~d~dG~l~va~~~~ 228 (302)
T d2p4oa1 204 FVE-Q-TNIDDFAFDVEGNLYGATHIY 228 (302)
T ss_dssp EEE-S-CCCSSEEEBTTCCEEEECBTT
T ss_pred ccC-C-CCCcceEECCCCCEEEEEcCC
Confidence 443 2 459999999999999998655
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=3.8e-18 Score=149.62 Aligned_cols=187 Identities=21% Similarity=0.324 Sum_probs=135.2
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEE
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYK 136 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~ 136 (337)
+....|+++++ .++.|| ++..++++..++.++...+... .....|.||++|++|+||++|... .+.+
T Consensus 54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~----------~~~~~p~~iavd~~g~i~v~d~~~~~~~~ 123 (260)
T d1rwia_ 54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF----------DGLNYPEGLAVDTQGAVYVADRGNNRVVK 123 (260)
T ss_dssp CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC----------CSCCSEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee----------eeeeecccccccccceeEeeccccccccc
Confidence 44568999999 678899 6666555444444444333211 334679999999999999999654 4888
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeecccc------CCCCCCCCccEEEcCCCcEE
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEI------DGAKPQIPNSVTVDSDGMVY 206 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~------~~~~~~~pn~v~vd~~G~ly 206 (337)
++..+........ .+ ...|.+++++++|+++ ....|..++.+. ....+..|++|++|++|+||
T Consensus 124 ~~~~~~~~~~~~~-----~~--~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~ 196 (260)
T d1rwia_ 124 LAAGSKTQTVLPF-----TG--LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVY 196 (260)
T ss_dssp ECTTCSSCEECCC-----CS--CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEE
T ss_pred cccccceeeeeee-----cc--cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeee
Confidence 8876554443321 11 1258999999999987 334566665332 12357889999999999999
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
++|... ++|+++++.+...... ..++..|.+|+++++|+ |||+|..+++|++|+..+
T Consensus 197 vsd~~~--------------~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 197 VTEHNT--------------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp EEETTT--------------TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECCCG
T ss_pred eeecCC--------------CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeCCC
Confidence 999864 4899999876654443 24578999999999984 999999999999998644
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.78 E-value=1.4e-17 Score=147.46 Aligned_cols=222 Identities=15% Similarity=0.199 Sum_probs=151.0
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECC--Cc
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAY--FG 133 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~--~g 133 (337)
|++..|.+|++ .+|.|| +|..++||.++++ |+.. ..++..... ......|.+++++.+ +..+++... +.
T Consensus 20 g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~--~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
T d1q7fa_ 20 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKR---DSQLLYPNRVAVVRNSGDIIVTERSPTHQ 94 (279)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSS---TTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEE--EEecccCCC---cccccccccccccccccccceeccCCccc
Confidence 45778999999 778899 8999999999987 4432 233322111 133457999997665 455555432 34
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeecccc-------CCCCCCCCccEEEcCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEI-------DGAKPQIPNSVTVDSD 202 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~-------~~~~~~~pn~v~vd~~ 202 (337)
|..+++++.....+... . ...|.+++++++|+++ ....+..++... ....+..|++++++++
T Consensus 95 i~~~~~~g~~~~~~~~~----~---~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~ 167 (279)
T d1q7fa_ 95 IQIYNQYGQFVRKFGAT----I---LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK 167 (279)
T ss_dssp EEEECTTSCEEEEECTT----T---CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS
T ss_pred cccccccccceeecCCC----c---ccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccc
Confidence 77888775555444321 1 1258999999999988 223444443211 1234678999999999
Q ss_pred CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCC-CEEEEEEeeCC
Q psy4771 203 GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMS-SRVHRYYLKGP 279 (337)
Q Consensus 203 G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~-~~I~~~~~~g~ 279 (337)
|++|+++... ++|++||+++..+..+. ..+..|.|||++++|+ |||++... .+|.+|+.+|.
T Consensus 168 g~i~v~d~~~--------------~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 168 QEIFISDNRA--------------HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp SEEEEEEGGG--------------TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC
T ss_pred eeEEeeeccc--------------cceeeeecCCceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCC
Confidence 9999999753 37888888755443332 2477899999999996 99999764 57999986654
Q ss_pred CCCceeeeecC-CCCCCCceeECCCCCEEEEec
Q psy4771 280 KQGKSEVFIDG-LPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 280 ~~~~~~~~~~~-~~g~Pdgi~~d~dG~l~va~~ 311 (337)
. ...+... ..+.|.+|++++||+|||+..
T Consensus 233 ~---~~~~~~~~~~~~p~~vav~~dG~l~V~~~ 262 (279)
T d1q7fa_ 233 L---ISALESKVKHAQCFDVALMDDGSVVLASK 262 (279)
T ss_dssp E---EEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred E---EEEEeCCCCCCCEeEEEEeCCCcEEEEeC
Confidence 2 2233222 234699999999999999874
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.73 E-value=1.4e-16 Score=143.57 Aligned_cols=185 Identities=16% Similarity=0.233 Sum_probs=130.4
Q ss_pred CccEEEe-eC-CeEEEEecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC---------
Q psy4771 64 GPEAVVK-HK-GDLYMGVDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY--------- 131 (337)
Q Consensus 64 ~P~~i~~-~~-g~ly~d~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~--------- 131 (337)
.|.++++ .+ +.+|+....++|++++.. +...+... ... ...+..|+++++|++|+|||+|..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~--~~~----g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~ 145 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK--DSE----GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSB--CTT----SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEec--ccc----ccccCCCcEEEECCCCCEEEecCccCccccccc
Confidence 4889999 44 478866566779999884 33322111 111 123456999999999999999852
Q ss_pred ------C-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCC-----cc----cccceeeecc-----------
Q psy4771 132 ------F-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-----TG----QTEQLISMDT----------- 184 (337)
Q Consensus 132 ------~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~-----~~----~~~~v~~~~~----------- 184 (337)
. .|+++++++ +...+.. ... .|++++++++++ ++ ....|..++.
T Consensus 146 ~~~~~~~G~v~~~~~dg-~~~~~~~---~~~-----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~ 216 (314)
T d1pjxa_ 146 RSMQEKFGSIYCFTTDG-QMIQVDT---AFQ-----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV 216 (314)
T ss_dssp BTTSSSCEEEEEECTTS-CEEEEEE---EES-----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred ceeccCCceEEEEeecC-ceeEeeC---Ccc-----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeE
Confidence 1 388999874 4444443 111 488899887764 33 2345655431
Q ss_pred --ccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEE
Q psy4771 185 --EIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFV 261 (337)
Q Consensus 185 --~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~l 261 (337)
.+.+.....|.++++|++|+||+++.. .|+|++|||++++... +......|.++||.+|+++|
T Consensus 217 ~~~~~~~~~~~pdGiavD~~GnlyVa~~~--------------~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l 282 (314)
T d1pjxa_ 217 WGHIPGTHEGGADGMDFDEDNNLLVANWG--------------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp EEECCCCSSCEEEEEEEBTTCCEEEEEET--------------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred EEEccccccccceeeEEecCCcEEEEEcC--------------CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEE
Confidence 112223446899999999999999875 3599999999887543 44456789999999999999
Q ss_pred EEEeCCCCEEEEEEee
Q psy4771 262 IVAETMSSRVHRYYLK 277 (337)
Q Consensus 262 yva~~~~~~I~~~~~~ 277 (337)
||++..+++|+++++.
T Consensus 283 yVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 283 FVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEETTTTEEEEEECS
T ss_pred EEEECCCCcEEEEECC
Confidence 9999999999999985
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=1.2e-16 Score=141.42 Aligned_cols=197 Identities=20% Similarity=0.253 Sum_probs=134.0
Q ss_pred EEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCC-C
Q psy4771 94 PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-G 171 (337)
Q Consensus 94 ~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~-g 171 (337)
...+||+...+ ..++.+|.||++|++|+|||+|.. +.|.++|+++..+..+... ....+ ....|.+++++.+ +
T Consensus 8 ~~~~~G~~G~~---~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~-~~~~~-~~~~p~~~~~~~~~~ 82 (279)
T d1q7fa_ 8 YHCKFGEFGVM---EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC-GKRDS-QLLYPNRVAVVRNSG 82 (279)
T ss_dssp EEEEECCBSSS---TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB-SSSTT-CBSSEEEEEEETTTT
T ss_pred EEeecCCCcCC---CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEeccc-CCCcc-ccccccccccccccc
Confidence 34567654332 245778999999999999999976 4599999986555555332 11111 1246888876544 4
Q ss_pred Ccc-----cccceeeecc------ccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE
Q psy4771 172 QTG-----QTEQLISMDT------EIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK 240 (337)
Q Consensus 172 ~~~-----~~~~v~~~~~------~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~ 240 (337)
.++ ....|..++. .+....+..|++++++++|++|+++.... +++++++++..+.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~--------------~~~~~~~~g~~~~ 148 (279)
T d1q7fa_ 83 DIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVM--------------RVIIFDQNGNVLH 148 (279)
T ss_dssp EEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTT--------------EEEEECTTSCEEE
T ss_pred ccceeccCCccccccccccccceeecCCCcccccceeccccCCcEEEEeeccc--------------eeeEeccCCceee
Confidence 444 2224433331 12223567899999999999999997633 6777887654433
Q ss_pred EE--eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEecCC
Q psy4771 241 VL--IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 241 ~~--~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.. ...+..|.+++++++| .+|+++...++|++|+.+|.. ...+.. +....|.||++|++|++|||....
T Consensus 149 ~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~i~Vad~~~ 220 (279)
T d1q7fa_ 149 KFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHN 220 (279)
T ss_dssp EEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred cccccccccccceeeeccce-eEEeeeccccceeeeecCCce---eeeecccccccCCcccccccCCeEEEEECCC
Confidence 32 2357789999999988 699999999999999987642 222221 222359999999999999998644
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=5.6e-16 Score=136.11 Aligned_cols=182 Identities=18% Similarity=0.245 Sum_probs=136.2
Q ss_pred ccEEEe--eCCeEE-EEecCcEEEEEeC-Cc-eeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCC-cEEEE
Q psy4771 65 PEAVVK--HKGDLY-MGVDGGHILKLSG-GK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYF-GLYKV 137 (337)
Q Consensus 65 P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~-gv~~v 137 (337)
+.+|++ .++.|| +|..+++|++.+. ++ .+.+.. .....|.||++|.- ++||++|... .|.++
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~-----------~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~ 106 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-----------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-----------TTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE-----------eccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence 456666 467777 9999999999876 32 333321 23467999999975 5999999764 48999
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~ 216 (337)
++++...+.+... .+..|.++++|+ .|.+|+++....
T Consensus 107 ~~dg~~~~~l~~~---------------------------------------~l~~p~~l~vdp~~g~ly~t~~~~~--- 144 (263)
T d1npea_ 107 KMDGTQRRVLFDT---------------------------------------GLVNPRGIVTDPVRGNLYWTDWNRD--- 144 (263)
T ss_dssp ETTSCSCEEEECS---------------------------------------SCSSEEEEEEETTTTEEEEEECCSS---
T ss_pred ecCCceEEEEecc---------------------------------------cccCCcEEEEecccCcEEEeecCCC---
Confidence 9887665555431 356799999998 577999997632
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
.++|++.+.++...+.+ ..++..|+|||+++.+++||++|...++|.+++++|. ..+.+..+++ .|
T Consensus 145 ---------~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~-~P 211 (263)
T d1npea_ 145 ---------NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQ-YP 211 (263)
T ss_dssp ---------SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCC-SE
T ss_pred ---------CcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCCC-Cc
Confidence 34789988876554444 4678899999999988899999999999999999764 2444455554 59
Q ss_pred CceeECCCCCEEEEecCC
Q psy4771 296 DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~ 313 (337)
.+|+++ ++++|++.+..
T Consensus 212 ~~lav~-~~~lYwtd~~~ 228 (263)
T d1npea_ 212 FAVTSY-GKNLYYTDWKT 228 (263)
T ss_dssp EEEEEE-TTEEEEEETTT
T ss_pred EEEEEE-CCEEEEEECCC
Confidence 999998 67899998765
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.1e-15 Score=130.73 Aligned_cols=185 Identities=14% Similarity=0.220 Sum_probs=136.5
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeCCc------eeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECC
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSGGK------LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAY 131 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~ 131 (337)
+..|.+|.+ .++.|| +|...++|.+.+... .+.+. ......|.||++|.. ++||++|..
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-----------~~~~~~p~glAvD~~~~~lY~~d~~ 97 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----------SRDIQAPDGLAVDWIHSNIYWTDSV 97 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----------CSSCSCCCEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-----------eCCCCCcceEEEeeccceEEEEecC
Confidence 446777877 467777 999999999986521 11111 133467999999975 599999977
Q ss_pred Cc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEc
Q psy4771 132 FG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSD 209 (337)
Q Consensus 132 ~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd 209 (337)
.+ |.+++.++.....+... ....|.++++|+ +|.+|+++
T Consensus 98 ~~~I~v~~~~g~~~~~~~~~---------------------------------------~~~~P~~l~vd~~~g~ly~~~ 138 (266)
T d1ijqa1 98 LGTVSVADTKGVKRKTLFRE---------------------------------------NGSKPRAIVVDPVHGFMYWTD 138 (266)
T ss_dssp TTEEEEEETTSSSEEEEEEC---------------------------------------TTCCEEEEEEETTTTEEEEEE
T ss_pred CCEEEeEecCCceEEEEEcC---------------------------------------CCCCcceEEEEcccCeEEEec
Confidence 54 88889887665555431 345699999998 67899999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
.+. .++|++.+.++...+.+. .++..|+|+++++.+++||++|...++|.+++++|.. .+.+.
T Consensus 139 ~~~-------------~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---~~~~~ 202 (266)
T d1ijqa1 139 WGT-------------PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTIL 202 (266)
T ss_dssp CSS-------------SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEE
T ss_pred cCC-------------CcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC---EEEEE
Confidence 763 248999998866665554 5688999999999988999999999999999998753 23333
Q ss_pred cCC--CCCCCceeECCCCCEEEEecCC
Q psy4771 289 DGL--PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 289 ~~~--~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
... ...|.+|+++ ++++|++....
T Consensus 203 ~~~~~~~~p~~lav~-~~~ly~td~~~ 228 (266)
T d1ijqa1 203 EDEKRLAHPFSLAVF-EDKVFWTDIIN 228 (266)
T ss_dssp ECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred eCCCcccccEEEEEE-CCEEEEEECCC
Confidence 221 2348899999 57899998665
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.62 E-value=1.2e-14 Score=130.95 Aligned_cols=183 Identities=15% Similarity=0.190 Sum_probs=122.9
Q ss_pred CccEEEe-eCCeEE-EEec----CcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC---
Q psy4771 64 GPEAVVK-HKGDLY-MGVD----GGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF--- 132 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~----~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~--- 132 (337)
+|.++++ .+|.+| ++.. .++|++++.. ........ .....+|++++++++|++||+|...
T Consensus 83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~nd~~~d~~G~l~vtd~~~~~~ 153 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED---------LSTAYCIDDMVFDSKGGFYFTDFRGYST 153 (319)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS---------SSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC---------CCcccCCcceeEEeccceeecccccccc
Confidence 6889999 688888 5543 4568888763 22222111 1335679999999999999998642
Q ss_pred ----cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEE
Q psy4771 133 ----GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYW 207 (337)
Q Consensus 133 ----gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyv 207 (337)
++++++++++.++.+.. .+..||+|++++||+ ||+
T Consensus 154 ~~~g~v~~~~~dg~~~~~~~~----------------------------------------~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 154 NPLGGVYYVSPDFRTVTPIIQ----------------------------------------NISVANGIALSTDEKVLWV 193 (319)
T ss_dssp BCCEEEEEECTTSCCEEEEEE----------------------------------------EESSEEEEEECTTSSEEEE
T ss_pred cCcceeEEEecccceeEEEee----------------------------------------ccceeeeeeeccccceEEE
Confidence 28899988777766653 356799999999986 999
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCC--CeeE-------EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKT--KKNK-------VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~--~~~~-------~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|... ++|++|+.+. .... ....+...|.||+++.+|+ |||++...++|.+|+.+|
T Consensus 194 ad~~~--------------~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G 258 (319)
T d2dg1a1 194 TETTA--------------NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG 258 (319)
T ss_dssp EEGGG--------------TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTS
T ss_pred ecccC--------------CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCC
Confidence 99763 3777775431 1111 1123355799999999995 999999999999999876
Q ss_pred CCCCceeeeec--CCCCCCCceeECCCCC-EEEEe
Q psy4771 279 PKQGKSEVFID--GLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 279 ~~~~~~~~~~~--~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
..+....+-.. +....+..+++.++++ +|++.
T Consensus 259 ~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 259 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 43322211110 0111356777777665 55554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=6.1e-14 Score=122.83 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=133.1
Q ss_pred ceeccCcccCccEEEee--CCeEE-EEecCcEEEEEeC-Ccee-EEEecCccccCccccCccCCcceEEECCC-CcEEEE
Q psy4771 55 EKLFENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GKLV-PVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVA 128 (337)
Q Consensus 55 ~~~~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~~~-~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVa 128 (337)
+.+....+..|.+|+++ ++.|| ++...++|.+.+. ++.. .+. ......|.+|++|+. |.||++
T Consensus 71 ~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-----------~~~l~~p~~l~vdp~~g~ly~t 139 (263)
T d1npea_ 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----------DTGLVNPRGIVTDPVRGNLYWT 139 (263)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----------CSSCSSEEEEEEETTTTEEEEE
T ss_pred EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe-----------cccccCCcEEEEecccCcEEEe
Confidence 44444556789999994 78888 8988999999986 3322 221 123467999999986 699999
Q ss_pred ECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-Cc
Q psy4771 129 DAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GM 204 (337)
Q Consensus 129 d~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~ 204 (337)
+.+. .|++++.++.....+... .+..|++|++|.. ++
T Consensus 140 ~~~~~~~~I~r~~~dG~~~~~i~~~---------------------------------------~~~~P~glaiD~~~~~ 180 (263)
T d1npea_ 140 DWNRDNPKIETSHMDGTNRRILAQD---------------------------------------NLGLPNGLTFDAFSSQ 180 (263)
T ss_dssp ECCSSSCEEEEEETTSCCCEEEECT---------------------------------------TCSCEEEEEEETTTTE
T ss_pred ecCCCCcEEEEecCCCCCceeeeee---------------------------------------cccccceEEEeecCcE
Confidence 8653 289999887665555431 3567999999975 56
Q ss_pred EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce
Q psy4771 205 VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS 284 (337)
Q Consensus 205 lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~ 284 (337)
||++|... +.|.++|.++...+.+..++..|.||++. +++||++|...++|.+++..+++ ..
T Consensus 181 lYw~d~~~--------------~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~--~~ 242 (263)
T d1npea_ 181 LCWVDAGT--------------HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK--EM 242 (263)
T ss_dssp EEEEETTT--------------TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE--EE
T ss_pred EEEEeCCC--------------CEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCc--cc
Confidence 99999763 48899998877777788889999999996 45899999999999999975431 22
Q ss_pred eeeecCCCCCCCceeECCC
Q psy4771 285 EVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 285 ~~~~~~~~g~Pdgi~~d~d 303 (337)
.++.......|.||++-.+
T Consensus 243 ~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 243 DTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EEECCSSCCCCCCEEEECS
T ss_pred eEECCCCCCCcceEEEeCC
Confidence 3443323345889987543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.1e-13 Score=117.66 Aligned_cols=178 Identities=16% Similarity=0.230 Sum_probs=127.7
Q ss_pred ceeccCcccCccEEEee--CCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEE
Q psy4771 55 EKLFENEIHGPEAVVKH--KGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVAD 129 (337)
Q Consensus 55 ~~~~~g~~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad 129 (337)
+.+....+..|++++++ ++.|| ++...++|.+.+. |........ .....|.+|++|+. |.||+++
T Consensus 69 ~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~----------~~~~~P~~l~vd~~~g~ly~~~ 138 (266)
T d1ijqa1 69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----------ENGSKPRAIVVDPVHGFMYWTD 138 (266)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE----------CTTCCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc----------CCCCCcceEEEEcccCeEEEec
Confidence 34444557789999994 78888 9999999999986 332222111 23467999999984 7999999
Q ss_pred CCC--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEE
Q psy4771 130 AYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVY 206 (337)
Q Consensus 130 ~~~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~ly 206 (337)
.+. .|.+.+.++...+.+... .+..|+++++|+. ++||
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~---------------------------------------~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTE---------------------------------------NIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECS---------------------------------------SCSCEEEEEEETTTTEEE
T ss_pred cCCCcceeEeccCCCceeccccc---------------------------------------ccceeeEEEeeccccEEE
Confidence 653 499999987777666531 3567999999985 5699
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec---cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
++|... +.|.+++.++...+.+.. .+..|.+|++. +++||+++...++|++++..++. .
T Consensus 180 w~d~~~--------------~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~--~ 241 (266)
T d1ijqa1 180 WVDSKL--------------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS--D 241 (266)
T ss_dssp EEETTT--------------TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC--C
T ss_pred EecCCc--------------CEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc--c
Confidence 999864 388888887665555543 35678899987 45899999999999999865432 2
Q ss_pred eeeeecCCCCCCCceeE
Q psy4771 284 SEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 284 ~~~~~~~~~g~Pdgi~~ 300 (337)
.+.+..++. .|.+|++
T Consensus 242 ~~~~~~~~~-~p~~i~v 257 (266)
T d1ijqa1 242 VNLLAENLL-SPEDMVL 257 (266)
T ss_dssp CEEEECSCS-CCCCEEE
T ss_pred eEEEEcCCC-CceEEEE
Confidence 344444443 3777765
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.50 E-value=9.2e-13 Score=117.17 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=129.7
Q ss_pred CccEEEe-eCCeEE-EEecCcEEEEEeC----CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEE
Q psy4771 64 GPEAVVK-HKGDLY-MGVDGGHILKLSG----GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYK 136 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~g~I~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~ 136 (337)
.|.++++ .+|.+| ++..++++.+++. +....+... .....|++++++++|++|+++...+ +++
T Consensus 69 ~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~ 138 (302)
T d2p4oa1 69 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL----------PDAIFLNGITPLSDTQYLTADSYRGAIWL 138 (302)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC----------TTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc----------CCccccceeEEccCCCEEeecccccccee
Confidence 6888988 678888 7777777777653 233333221 3346699999999999999997654 999
Q ss_pred EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccC
Q psy4771 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKS 216 (337)
Q Consensus 137 vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~ 216 (337)
+++.++.............. ........+|+++.+. +.+|+++...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~ngi~~~~-~~l~~~~~~~---- 184 (302)
T d2p4oa1 139 IDVVQPSGSIWLEHPMLARS-----------------------------NSESVFPAANGLKRFG-NFLYVSNTEK---- 184 (302)
T ss_dssp EETTTTEEEEEEECGGGSCS-----------------------------STTCCSCSEEEEEEET-TEEEEEETTT----
T ss_pred eeccCCcceeEecCCcccee-----------------------------eccCcccccccccccC-CceeeecCCC----
Confidence 99988876655432100000 0011355788998875 5799988763
Q ss_pred ceeeeeecCCccEEEEcCCCCee---EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec---C
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKN---KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID---G 290 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~---~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~---~ 290 (337)
++|++++...... .........|.||++++||+ |||++...++|.+++.+|. ...+++ .
T Consensus 185 ----------~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~----~~~~~~~~~~ 249 (302)
T d2p4oa1 185 ----------MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS----TTIIAQAEQG 249 (302)
T ss_dssp ----------TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC----EEEEECGGGT
T ss_pred ----------CeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCC----EEEEEecCCC
Confidence 4788887654321 12233466899999999995 9999999999999987653 333332 2
Q ss_pred CCCCCCceeEC---CCCC-EEEEecCC
Q psy4771 291 LPGLPDNVKRD---SKGN-FLVSLVCP 313 (337)
Q Consensus 291 ~~g~Pdgi~~d---~dG~-l~va~~~~ 313 (337)
+.+ |.+++++ +|++ |||+...+
T Consensus 250 ~~~-pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 250 VIG-STAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp CTT-EEEEEECCSTTTTTEEEEEECTT
T ss_pred CCC-ceEEEEcCCCCCCCEEEEECCCC
Confidence 333 8999995 4554 99998766
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.42 E-value=3.3e-12 Score=113.41 Aligned_cols=180 Identities=22% Similarity=0.293 Sum_probs=121.6
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC------c-
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF------G- 133 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~------g- 133 (337)
.|.+++. .+|.+|+...+ .|+++++ ++.+.+...-. .....+|+.+.+|++|++|+++... +
T Consensus 60 ~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~-------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~ 131 (295)
T d2ghsa1 60 MGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES-------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGS 131 (295)
T ss_dssp CEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST-------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEE
T ss_pred CcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeec-------CCCcccceeeEECCCCCEEEEecccccccccee
Confidence 4667777 78888866665 4999987 44444432211 1334679999999999999997421 1
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST 212 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~ 212 (337)
+++++ .++++.+.. .+..||+++++++++ +|++|+..
T Consensus 132 l~~~~--~g~~~~~~~----------------------------------------~~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 132 IYHVA--KGKVTKLFA----------------------------------------DISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp EEEEE--TTEEEEEEE----------------------------------------EESSEEEEEECTTSCEEEEEETTT
T ss_pred Eeeec--CCcEEEEee----------------------------------------ccCCcceeeecCCCceEEEeeccc
Confidence 55554 355555543 355699999999886 99999864
Q ss_pred CccCceeeeeecCCccEEEEcCC--CC----eeEEEe---ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPK--TK----KNKVLI---ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~--~~----~~~~~~---~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
+ +|++|+.+ .+ +..... .....|.|++++.+| .|||+....++|.+|+.+|.....
T Consensus 170 ~--------------~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~G~~~~~ 234 (295)
T d2ghsa1 170 N--------------RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIAR 234 (295)
T ss_dssp C--------------EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEE
T ss_pred c--------------eeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCCCcEeeE
Confidence 3 67766543 21 122222 234579999999999 499999999999999987643222
Q ss_pred eeeeecCCCC-CCCceeEC-CCC-CEEEEecCC
Q psy4771 284 SEVFIDGLPG-LPDNVKRD-SKG-NFLVSLVCP 313 (337)
Q Consensus 284 ~~~~~~~~~g-~Pdgi~~d-~dG-~l~va~~~~ 313 (337)
+. +|. .|.++++. +|+ +|||+....
T Consensus 235 ----i~-lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 235 ----YE-VPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp ----EE-CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ----ec-CCCCceEEEEEeCCCCCEEEEEECCc
Confidence 22 332 48899996 454 499987543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.35 E-value=1.5e-10 Score=100.30 Aligned_cols=214 Identities=13% Similarity=0.178 Sum_probs=139.2
Q ss_pred CccEEEe-eC-CeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEE
Q psy4771 64 GPEAVVK-HK-GDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVN 138 (337)
Q Consensus 64 ~P~~i~~-~~-g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd 138 (337)
.|.++++ .+ ..|| ++..+++|..|+..+...+..+ .....|.+++++++| .++++..... +..++
T Consensus 33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----------PAGSSPQGVAVSPDGKQVYVTNMASSTLSVID 102 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee----------eccccccccccccccccccccccccceeeecc
Confidence 6899999 45 4688 7778899999997544444333 223568999999998 5667665444 77778
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----ccc-ceeeeccccC-----CCCCCCCccEEEcCCCc-EEE
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTE-QLISMDTEID-----GAKPQIPNSVTVDSDGM-VYW 207 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~-~v~~~~~~~~-----~~~~~~pn~v~vd~~G~-lyv 207 (337)
..+++....... .. .|..++++++|+.+ ..+ .+........ -.....|..+++.+++. +|+
T Consensus 103 ~~~~~~~~~~~~----~~----~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
T d1l0qa2 103 TTSNTVAGTVKT----GK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYV 174 (301)
T ss_dssp TTTTEEEEEEEC----SS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred cccceeeeeccc----cc----cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceee
Confidence 877766555431 11 36778899999876 222 2222221100 01345678899999876 777
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--CCEEEEEEeeCCCCCcee
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM--SSRVHRYYLKGPKQGKSE 285 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~--~~~I~~~~~~g~~~~~~~ 285 (337)
+.... +.+..++....+..........|++++++++++.+|++... .++|.++++...+. ..
T Consensus 175 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~ 238 (301)
T d1l0qa2 175 ANFDS--------------MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TA 238 (301)
T ss_dssp EETTT--------------TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EE
T ss_pred ecccc--------------cccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE--EE
Confidence 66542 24445555555554445555679999999999999998654 46899988643211 11
Q ss_pred eeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 286 VFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 286 ~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
.+ + ....|.++++++||+ +||+....
T Consensus 239 ~~-~-~~~~~~~va~spdg~~l~va~~~~ 265 (301)
T d1l0qa2 239 RI-P-VGPDPAGIAVTPDGKKVYVALSFC 265 (301)
T ss_dssp EE-E-CCSSEEEEEECTTSSEEEEEETTT
T ss_pred EE-c-CCCCEEEEEEeCCCCEEEEEECCC
Confidence 22 2 224589999999997 88987654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.7e-09 Score=95.03 Aligned_cols=221 Identities=11% Similarity=0.116 Sum_probs=132.1
Q ss_pred CccEEEe-eC-CeEE-EEecCcEEEEEe--CCce--eEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-E
Q psy4771 64 GPEAVVK-HK-GDLY-MGVDGGHILKLS--GGKL--VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-L 134 (337)
Q Consensus 64 ~P~~i~~-~~-g~ly-~d~~~g~I~~~~--~~~~--~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v 134 (337)
.|.+|++ .+ ..|| ++..+++|..|+ .++. +.... ......|.+++++++| .||+++...+ +
T Consensus 38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~----------~~~~~~p~~l~~spDg~~l~v~~~~~~~v 107 (333)
T d1ri6a_ 38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE----------SALPGSLTHISTDHQGQFVFVGSYNAGNV 107 (333)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE----------EECSSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee----------cccCCCceEEEEcCCCCEEeecccCCCce
Confidence 5788888 44 5688 555578777664 3322 22211 1233569999999999 6888875444 6
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccc------------cCCCCCCCCccE
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTE------------IDGAKPQIPNSV 197 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~------------~~~~~~~~pn~v 197 (337)
..++.+........... ... ..|+.+.++++|+.+ ....+..+... ........|..+
T Consensus 108 ~~~~~~~~~~~~~~~~~--~~~---~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i 182 (333)
T d1ri6a_ 108 SVTRLEDGLPVGVVDVV--EGL---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 182 (333)
T ss_dssp EEEEEETTEEEEEEEEE--CCC---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred eeeccccccceeccccc--CCC---ccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEE
Confidence 55555555444333211 111 248889999999986 22233333211 111234567889
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE---------eccccceeeEEEccCCCEEEEEeCC
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL---------IANLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~---------~~~~~~p~gia~~~dg~~lyva~~~ 267 (337)
++++++. +|++..... ...++.++......... ......+.++++++|++++|++...
T Consensus 183 ~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~ 250 (333)
T d1ri6a_ 183 VFHPNEQYAYCVNELNS------------SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 250 (333)
T ss_dssp EECTTSSEEEEEETTTT------------EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred EEeccceeEEeeccccC------------ceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc
Confidence 9999886 666654422 11333333332222111 1224567889999999999999999
Q ss_pred CCEEEEEEeeCCC-CCceeeeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 268 SSRVHRYYLKGPK-QGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 268 ~~~I~~~~~~g~~-~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
.+.+..|.++... ......... ..+.|.++++++||+ +||+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~a~spDGk~l~va~~~ 296 (333)
T d1ri6a_ 251 ASLITVFSVSEDGSVLSKEGFQP-TETQPRGFNVDHSGKYLIAAGQK 296 (333)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEE-CSSSCCCEEECTTSSEEEEECTT
T ss_pred CCeEEEEEEcCCCCEEEEEEEeC-CCCCeeEEEEeCCCCEEEEEECC
Confidence 9999998886432 112121222 224699999999998 7887643
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.26 E-value=1.1e-09 Score=94.63 Aligned_cols=204 Identities=16% Similarity=0.207 Sum_probs=133.9
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC-cEEEEEcCCCeEEEEecc
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF-GLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~-gv~~vd~~~g~~~~l~~~ 150 (337)
.+| ++..++.|..||..+.+.+..+ +....|.+++++++| .|||++... .|..+|.++++......
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i----------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~- 71 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATI----------PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP- 71 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEE----------ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-
Confidence 467 6778899999997443333222 223569999999999 588987654 49999998887654432
Q ss_pred ccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC------CCCCCCccEEEcCCCc-EEEEcCCCCccCcee
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG------AKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLF 219 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~------~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~ 219 (337)
.+. .|+.++++++|+.+ ..+....+.+...+ .....+..++++++|. ++++...
T Consensus 72 ----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~-------- 136 (301)
T d1l0qa2 72 ----AGS---SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-------- 136 (301)
T ss_dssp ----CSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT--------
T ss_pred ----ccc---cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeecc--------
Confidence 111 37889999999876 22222222211111 1234577888999887 5555443
Q ss_pred eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCcee
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~ 299 (337)
.+.+..++..+++..........|..+++++|++.+|++......+.......... ... .. ....|.+++
T Consensus 137 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~ 206 (301)
T d1l0qa2 137 ------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--IDT-VK-VEAAPSGIA 206 (301)
T ss_dssp ------TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEE-EE-CSSEEEEEE
T ss_pred ------ccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceee--eec-cc-ccCCcceee
Confidence 23567777777776666666778999999999999999998888877776543211 111 11 234588999
Q ss_pred ECCCCC-EEEEecCC
Q psy4771 300 RDSKGN-FLVSLVCP 313 (337)
Q Consensus 300 ~d~dG~-l~va~~~~ 313 (337)
++.+|+ +|++....
T Consensus 207 ~~~~g~~~~v~~~~~ 221 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDK 221 (301)
T ss_dssp ECTTSSEEEEEEECS
T ss_pred ccccccccccccccc
Confidence 999997 66765443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=2.4e-09 Score=97.31 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=124.8
Q ss_pred CccEEEe--eCCeEEEEecCcEEEE--EeC-CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC--c-E
Q psy4771 64 GPEAVVK--HKGDLYMGVDGGHILK--LSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF--G-L 134 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~~~g~I~~--~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~--g-v 134 (337)
.|.+|++ ++..||+... +.+.. ++. ++...... ......|..++++++| .+||+.+.. + +
T Consensus 41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~----------~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v 109 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEAS----------HPIGGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEE----------EECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEee----------ecCCCCcEEEEECCCCCEEEEEEecCCCCEE
Confidence 4678888 4567895443 33444 443 33322211 1233568899999998 567765422 1 3
Q ss_pred EEE--EcCCCeEEEEecc--------ccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCC-----------
Q psy4771 135 YKV--NVTTGQTEQLISM--------DTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG----------- 188 (337)
Q Consensus 135 ~~v--d~~~g~~~~l~~~--------~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~----------- 188 (337)
..+ ...++....+... .....-+....|+.+++++||+++ ..+.|..+.....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T d1jofa_ 110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred EEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec
Confidence 332 2222222111100 000000111357899999999976 33566655422221
Q ss_pred CCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCee--EEEe------------------cccc
Q psy4771 189 AKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN--KVLI------------------ANLH 247 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~--~~~~------------------~~~~ 247 (337)
.....|.+++++++|+ +|++..... .|..|+.++++. .... ....
T Consensus 190 ~~g~gPr~i~f~pdg~~~yv~~e~~~--------------~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (365)
T d1jofa_ 190 DPGDHPRWVAMHPTGNYLYALMEAGN--------------RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTT--------------EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred CCCCceEEEEECCCCceEEEeccCCC--------------EEEEEEecCCCceEEEEeeeeccccccccccccccccccC
Confidence 1346799999999997 888776532 444433322211 1100 1123
Q ss_pred ceeeEEEccCCCEEEEEeCCCC-----EEEEEEeeCCC-CCceeeeec--CCCCCCCceeECC-CCC-EEEEecCC
Q psy4771 248 FANGVELSADESFVIVAETMSS-----RVHRYYLKGPK-QGKSEVFID--GLPGLPDNVKRDS-KGN-FLVSLVCP 313 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~-----~I~~~~~~g~~-~~~~~~~~~--~~~g~Pdgi~~d~-dG~-l~va~~~~ 313 (337)
.+..|+++|||++||+++.+.+ .|..|+++... ......+.. ...+.|.+|++++ +|+ +||+....
T Consensus 256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s 331 (365)
T d1jofa_ 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE 331 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC
Confidence 5778999999999999986544 38888875321 111111111 1234699999996 787 88887554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.14 E-value=4.9e-09 Score=95.24 Aligned_cols=179 Identities=12% Similarity=0.107 Sum_probs=112.3
Q ss_pred CCcceEEECCCC-cEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-------cccceeee
Q psy4771 112 GRPLGIKFDKNG-ALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-------QTEQLISM 182 (337)
Q Consensus 112 ~~P~Gl~~d~~G-~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-------~~~~v~~~ 182 (337)
..|..|+++++| .||++.... ..+.++.+++....... .. |. .|+.++++++|+.+ ..+.|...
T Consensus 40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~---~~-~~---~p~~v~~~~~~~~~~v~~a~~~~~~v~~~ 112 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH---PI-GG---HPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE---EC-CS---SGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee---cC-CC---CcEEEEECCCCCEEEEEEecCCCCEEEEe
Confidence 457789999998 788886432 37778887554433322 12 22 48999999999842 11222221
Q ss_pred c--------------cc---------cCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEE--cCCC
Q psy4771 183 D--------------TE---------IDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQY--NPKT 236 (337)
Q Consensus 183 ~--------------~~---------~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~--d~~~ 236 (337)
. .. .+.+...++++++++|||+ +|++|.+.+ +|++| +. +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d--------------~v~~~~~~~-~ 177 (365)
T d1jofa_ 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN--------------KLWTHRKLA-S 177 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--------------EEEEEEECT-T
T ss_pred EccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCC--------------EEEEEEccC-C
Confidence 1 00 0011234678999999997 999987643 34433 33 2
Q ss_pred CeeEEE-----eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeee------ecCCC----------CCC
Q psy4771 237 KKNKVL-----IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVF------IDGLP----------GLP 295 (337)
Q Consensus 237 ~~~~~~-----~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~------~~~~~----------g~P 295 (337)
+..... ......|.+++++||++.+||++...++|.+|+.+.......... ....+ ..+
T Consensus 178 g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (365)
T d1jofa_ 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCc
Confidence 322211 123468999999999999999999999999999976432211110 00000 125
Q ss_pred CceeECCCCC-EEEEecC
Q psy4771 296 DNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 296 dgi~~d~dG~-l~va~~~ 312 (337)
..|++++||+ +|++...
T Consensus 258 ~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 258 DVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEEEE
T ss_pred cceEECCCCCEEEEEccc
Confidence 6799999997 8888653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.05 E-value=1.1e-09 Score=101.58 Aligned_cols=222 Identities=13% Similarity=0.135 Sum_probs=124.7
Q ss_pred eccCcccCccEEEe----eCCeEE-EEecCcEEEEEeCCce--eEEEecCccccCccccCccCCcceEEECCCC-cEEEE
Q psy4771 57 LFENEIHGPEAVVK----HKGDLY-MGVDGGHILKLSGGKL--VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVA 128 (337)
Q Consensus 57 ~~~g~~~~P~~i~~----~~g~ly-~d~~~g~I~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVa 128 (337)
...|....|+-... ++..|| ++..++||.+++.... ..+..+ +.+..|+|+++.++| ++||+
T Consensus 64 ~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i----------P~g~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 64 YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI----------PNVQAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp CSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC----------TTCCCEEEEEECCSSBCCEEE
T ss_pred cccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec----------CCCCCccceEEeccCCEEEEE
Confidence 34455566755433 355788 7889999999997543 333222 445779999999998 77887
Q ss_pred ECCC-c------------------EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeecc
Q psy4771 129 DAYF-G------------------LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDT 184 (337)
Q Consensus 129 d~~~-g------------------v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~ 184 (337)
.... . +..+|.++.++..-.. ..+ .|..++++++|+++ ..+.+..++.
T Consensus 134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~----v~~----~p~~v~~spdGk~a~vt~~nse~~~~id~ 205 (441)
T d1qnia2 134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI----VDG----NLDNTDADYTGKYATSTCYNSERAVDLAG 205 (441)
T ss_dssp EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE----ESS----CCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred eccCCcccccCcccccccccccceEEeecCccceeeEEEe----cCC----CccceEECCCCCEEEEEecCCCceEEEec
Confidence 5321 1 2446766655543332 222 25566666666654 1122222211
Q ss_pred ccCCC-----CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEc-CCCCeeEEEeccccceeeEEEccC
Q psy4771 185 EIDGA-----KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYN-PKTKKNKVLIANLHFANGVELSAD 257 (337)
Q Consensus 185 ~~~~~-----~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d-~~~~~~~~~~~~~~~p~gia~~~d 257 (337)
..... -.+.|..+++.++|+ +++. .++ +..++ ..+.+....+.....|+|++++||
T Consensus 206 ~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~----------------~~~-v~vvd~~~~~~v~~~IPvgksPhGv~vSPD 268 (441)
T d1qnia2 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIG----------------DSK-VPVVDGRGESEFTRYIPVPKNPHGLNTSPD 268 (441)
T ss_dssp HTCSSBCEEEEEEHHHHHHHHHTTCCBCCT----------------TCC-CCEEECSSSCSSEEEECCBSSCCCEEECTT
T ss_pred cCcceEEEEEeCCccceEEEecCCCEEEeC----------------CCC-cEEEEcccCCceEEEEeCCCCccCceECCC
Confidence 00000 112233333344443 1111 112 22333 222333334445678999999999
Q ss_pred CCEEEEEeCCCCEEEEEEeeC------CCCCce-eeeecCCCC-CCCceeECCCCCEEEEecCC
Q psy4771 258 ESFVIVAETMSSRVHRYYLKG------PKQGKS-EVFIDGLPG-LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 258 g~~lyva~~~~~~I~~~~~~g------~~~~~~-~~~~~~~~g-~Pdgi~~d~dG~l~va~~~~ 313 (337)
|+++|++....+.|.+++++. .++... .+..+...| .|-.-++|.+|+.|.+.+..
T Consensus 269 Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d 332 (441)
T d1qnia2 269 GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID 332 (441)
T ss_dssp SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred CCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence 999999999999999999852 122221 222221112 25556899999999998644
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=4.3e-08 Score=85.69 Aligned_cols=176 Identities=10% Similarity=0.058 Sum_probs=109.0
Q ss_pred CeEE-EEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EE--EEEcCCCeE
Q psy4771 73 GDLY-MGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LY--KVNVTTGQT 144 (337)
Q Consensus 73 g~ly-~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~--~vd~~~g~~ 144 (337)
..+| ++..+++|..|+- +..+.+..+ ...+.|.+|+++||| .||++....+ |. .++..+...
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~----------~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~ 73 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVV----------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE----------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEE----------cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 3577 7778888888863 333433322 233668999999999 6889886543 54 455444444
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeee
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~ 223 (337)
+..... . ....|.++++++||+ ||+++....
T Consensus 74 ~~~~~~---~-----------------------------------~~~~p~~l~~spDg~~l~v~~~~~~---------- 105 (333)
T d1ri6a_ 74 TFAAES---A-----------------------------------LPGSLTHISTDHQGQFVFVGSYNAG---------- 105 (333)
T ss_dssp EEEEEE---E-----------------------------------CSSCCSEEEECTTSSEEEEEETTTT----------
T ss_pred EEeeec---c-----------------------------------cCCCceEEEEcCCCCEEeecccCCC----------
Confidence 333321 0 134588999999997 887765422
Q ss_pred cCCccEEEEcCCCCeeE---EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce--e-eeecCCCCCCCc
Q psy4771 224 SGSGRLIQYNPKTKKNK---VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS--E-VFIDGLPGLPDN 297 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~---~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~--~-~~~~~~~g~Pdg 297 (337)
.+..++....... ........|.++++++|++.+++++.....|..++......... . .........|..
T Consensus 106 ----~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~ 181 (333)
T d1ri6a_ 106 ----NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH 181 (333)
T ss_dssp ----EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred ----ceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccE
Confidence 3333332223221 22334567899999999999999999999999999864321111 1 111112235789
Q ss_pred eeECCCCCE-EEEe
Q psy4771 298 VKRDSKGNF-LVSL 310 (337)
Q Consensus 298 i~~d~dG~l-~va~ 310 (337)
++++.++.. |++.
T Consensus 182 i~~~~~~~~~~~~~ 195 (333)
T d1ri6a_ 182 MVFHPNEQYAYCVN 195 (333)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEEeccceeEEeec
Confidence 999999874 4443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.86 E-value=9.8e-08 Score=88.31 Aligned_cols=176 Identities=10% Similarity=-0.006 Sum_probs=112.2
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccc
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~ 151 (337)
.++ +...+|+|..||....+.+..+ .....|.+++|+||| .+|++.....+..+|.++++.......
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~----------~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i- 101 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVL----------DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI- 101 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE----------ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE-
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEE----------eCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE-
Confidence 444 5666788888887443333333 122459999999999 678887555688899876653333210
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEE----cCCCc-EEEEcCCCCccCceeeeeecCC
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTV----DSDGM-VYWSDSSTKYKSGLFEGLTSGS 226 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~v----d~~G~-lyvtd~~~~~~~~~~~~~~~~~ 226 (337)
. ....+.++++ ++||+ +|++... .
T Consensus 102 ---~----------------------------------~~~~~~~~~~s~~~SpDG~~l~vs~~~--------------~ 130 (432)
T d1qksa2 102 ---K----------------------------------IGSEARSIETSKMEGWEDKYAIAGAYW--------------P 130 (432)
T ss_dssp ---E----------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEE--------------T
T ss_pred ---e----------------------------------cCCCCCCeEEecccCCCCCEEEEEcCC--------------C
Confidence 0 0122344444 56887 7776653 3
Q ss_pred ccEEEEcCCCCeeEEEecc------------ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCC
Q psy4771 227 GRLIQYNPKTKKNKVLIAN------------LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGL 294 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~ 294 (337)
+.+..+|.++++....... .....+|++++||+.++|+....++|..++....+......+. ....
T Consensus 131 ~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~--~g~~ 208 (432)
T d1qksa2 131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERF 208 (432)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSS
T ss_pred CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc--ccCc
Confidence 4677777777765433221 2235678999999999999999999999987543222222221 2235
Q ss_pred CCceeECCCCC-EEEEecCC
Q psy4771 295 PDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 295 Pdgi~~d~dG~-l~va~~~~ 313 (337)
|.++++++||+ ++++....
T Consensus 209 ~~~~~~spdg~~~~va~~~~ 228 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANAR 228 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGG
T ss_pred cccceECCCCCEEEEecccc
Confidence 88999999998 67776544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.77 E-value=7.8e-08 Score=83.73 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=99.3
Q ss_pred eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEEcCCCeEEEEeccc
Q psy4771 74 DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~~~~l~~~~ 151 (337)
.+++...+++|..||..+.+.+..+.. ......|.++++++|| .|||+....+ |..+|.++++........
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~-------~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~ 75 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITI-------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEEC-------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEEC-------CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence 355778889999999754433332211 1234569999999999 5788876544 999999988766544310
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLI 230 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~ 230 (337)
.+. .....+.+++++++|+ +|++...... .........+.+.
T Consensus 76 ---~~~-------------------------------~~~~~~~~v~~s~dg~~l~~~~~~~~~---~~~~~~~~~~~~~ 118 (337)
T d1pbyb_ 76 ---TPE-------------------------------ERVKSLFGAALSPDGKTLAIYESPVRL---ELTHFEVQPTRVA 118 (337)
T ss_dssp ---BTT-------------------------------EEEECTTCEEECTTSSEEEEEEEEEEE---CSSCEEECCCEEE
T ss_pred ---CCc-------------------------------ccccceeeEEEcCCCcEEEEeecCCcc---eeeecccccccee
Confidence 100 0134578999999986 7776653211 0001133456788
Q ss_pred EEcCCCCeeEEEeccccceeeEEEccCCCEEEEEe
Q psy4771 231 QYNPKTKKNKVLIANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 231 ~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~ 265 (337)
.+|..+++..........++++++++||+++|++.
T Consensus 119 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred eccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence 89988888766666667899999999999999875
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.76 E-value=9.3e-07 Score=82.13 Aligned_cols=72 Identities=15% Similarity=0.327 Sum_probs=48.0
Q ss_pred CceeccCcccCccEEEe-eCCeEEEEec-CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC----CcE
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLYMGVD-GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN----GAL 125 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly~d~~-~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G~l 125 (337)
++.++++ +..|.+|++ .+|.||+... .|+|++++. ++.+.+..+...... ....+...||+++|+ +.+
T Consensus 19 ~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~---~~ge~GLLgia~~Pdf~~n~~i 94 (450)
T d1crua_ 19 KKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND---ADGQNGLLGFAFHPDFKNNPYI 94 (450)
T ss_dssp EEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC---TTSSCSEEEEEECTTTTTSCEE
T ss_pred EEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccc---cCCCCceeeEEeCCCCccCCEE
Confidence 5666666 679999999 7899997765 799999986 444444433221100 112244678999985 689
Q ss_pred EEEE
Q psy4771 126 HVAD 129 (337)
Q Consensus 126 yVad 129 (337)
|++-
T Consensus 95 Yvsy 98 (450)
T d1crua_ 95 YISG 98 (450)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.75 E-value=1.5e-06 Score=77.73 Aligned_cols=228 Identities=10% Similarity=-0.000 Sum_probs=118.0
Q ss_pred EEEe--eCCeEEE-Ee---------cCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-C
Q psy4771 67 AVVK--HKGDLYM-GV---------DGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-F 132 (337)
Q Consensus 67 ~i~~--~~g~ly~-d~---------~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~ 132 (337)
.+++ ++..||+ +. .++.|..||..+.+.+..+..... ........|.++++.+|| .|||++.. .
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~--~~~~~g~~p~~~a~SpDGk~l~va~~~~~ 146 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA--PRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS--CSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc--ceecccCCccceEECCCCCEEEEEeCCCC
Confidence 4666 4556884 32 356789998754443332211000 001234568999999999 89999754 4
Q ss_pred cEEEEEcCCCeEEEEeccccccCCCCC-CCCCceeeCCCCCcc----cccce--eeeccccCCCCCC-------CCccEE
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEIDGAKP-QIPNSVTVDSDGQTG----QTEQL--ISMDTEIDGAKPQ-------IPNSVT 198 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~g~~~-~~P~~v~~~~~g~~~----~~~~v--~~~~~~~~~~~~~-------~pn~v~ 198 (337)
.+..+|..++++......... ....+ --+..++..+||++. ..+.. ...........-. .+.+..
T Consensus 147 ~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 147 AAAGLSVPGASDDQLTKSASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp CEEEEEETTTEEEEEEECSSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred eEEEEECCCCcEeEEeeccCc-ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence 489999998887655432100 00000 012225556666665 11111 0000000000011 122222
Q ss_pred EcC-CCcEEEEcCCCCc--------------------cCc------------eeeee-------ecCCccEEEEcCCCCe
Q psy4771 199 VDS-DGMVYWSDSSTKY--------------------KSG------------LFEGL-------TSGSGRLIQYNPKTKK 238 (337)
Q Consensus 199 vd~-~G~lyvtd~~~~~--------------------~~~------------~~~~~-------~~~~G~v~~~d~~~~~ 238 (337)
+.+ .|.+|+.+..... .++ ++... ......|+.+|.++++
T Consensus 226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence 222 2334444433210 000 00000 0112357788888886
Q ss_pred eEEEeccccceeeEEEccCCC-EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeEC
Q psy4771 239 NKVLIANLHFANGVELSADES-FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 239 ~~~~~~~~~~p~gia~~~dg~-~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
..........++++++++||+ .||++....+.|.+++...++ ..-.++ ++..|.+|++-
T Consensus 306 ~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk---~~~~i~-~g~~P~~l~~~ 365 (368)
T d1mdah_ 306 TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ---DQSSVE-LDKGPESLSVQ 365 (368)
T ss_dssp EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE---EEEECC-CCSCCCEEECC
T ss_pred EeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC---EEEEEE-CCCCCCEEEEe
Confidence 544334445789999999997 589999999999999975432 211222 34459999874
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.69 E-value=4.5e-06 Score=73.93 Aligned_cols=184 Identities=12% Similarity=0.083 Sum_probs=106.7
Q ss_pred CCcceEEECCCC-cEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cccceeeeccc-
Q psy4771 112 GRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTEQLISMDTE- 185 (337)
Q Consensus 112 ~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~~v~~~~~~- 185 (337)
..|.++++.++| .+|++....+ +..++..+++............+. ...+..+..+.++..+ ..+.+..+...
T Consensus 165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ-NLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc-cceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence 457889999998 7788876555 777887776655443211111111 0123334445554444 11222222200
Q ss_pred --------cCC---------CCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc
Q psy4771 186 --------IDG---------AKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH 247 (337)
Q Consensus 186 --------~~~---------~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~ 247 (337)
... ........+++.++|. +|++..... ........+.+..+|..+++.......-.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~v~~~d~~t~~~~~~~~~~~ 318 (373)
T d2madh_ 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS-----AWKLHAAAKEVTSVTGLVGQTSSQISLGH 318 (373)
T ss_pred CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc-----eEEeecCCCeEEEEECCCCcEEEEecCCC
Confidence 000 0112345567777775 555544322 11223455688999988887655555557
Q ss_pred ceeeEEEccCCCE-EEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCC
Q psy4771 248 FANGVELSADESF-VIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKG 304 (337)
Q Consensus 248 ~p~gia~~~dg~~-lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG 304 (337)
.+.+++++|||+. ||++....+.|.+++...++. ... +......|..|++..++
T Consensus 319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~--~~~-~~~~g~~P~~l~~~~~~ 373 (373)
T d2madh_ 319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ--DQS-TVELGSGPQVLSVMNEA 373 (373)
T ss_pred CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--EEE-ECCCCCCCcEEEEecCC
Confidence 7999999999986 578888899999999864321 222 22233458999987653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.65 E-value=1.9e-06 Score=74.54 Aligned_cols=203 Identities=14% Similarity=0.078 Sum_probs=111.1
Q ss_pred cCccEEEe-eCC-eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-------
Q psy4771 63 HGPEAVVK-HKG-DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY------- 131 (337)
Q Consensus 63 ~~P~~i~~-~~g-~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~------- 131 (337)
..|.++++ .+| .+| ++..++.|..||..+.+.+..+.... .......+.+++++++| .+|++...
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~----~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~ 109 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST----PEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB----TTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC----CcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence 46889998 454 678 67788999999874333222221100 01223457899999998 67777531
Q ss_pred -----CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc--cccceeeeccc-------cCC-----CCCC
Q psy4771 132 -----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTE-------IDG-----AKPQ 192 (337)
Q Consensus 132 -----~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~-------~~~-----~~~~ 192 (337)
..+..+|..+++...... ... .|+.+++++||+.+ ..+.+..++.. ... ....
T Consensus 110 ~~~~~~~~~~~d~~~~~~~~~~~----~~~----~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 181 (337)
T d1pbyb_ 110 FEVQPTRVALYDAETLSRRKAFE----APR----QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181 (337)
T ss_dssp EEECCCEEEEEETTTTEEEEEEE----CCS----SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBC
T ss_pred ccccccceeeccccCCeEEEecc----ccC----CceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcccccee
Confidence 235667777776655443 111 37899999999987 21222222100 000 0001
Q ss_pred CCccEEEcC---C-C-----------------------cEEEEcCCCCc---------cCceee--------eeecCCcc
Q psy4771 193 IPNSVTVDS---D-G-----------------------MVYWSDSSTKY---------KSGLFE--------GLTSGSGR 228 (337)
Q Consensus 193 ~pn~v~vd~---~-G-----------------------~lyvtd~~~~~---------~~~~~~--------~~~~~~G~ 228 (337)
.+++..+.. . + .+++.+..... ...... ......+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (337)
T d1pbyb_ 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV 261 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESE
T ss_pred cCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcccc
Confidence 122111110 0 0 01111111100 000000 01112346
Q ss_pred EEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 229 LIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 229 v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+..+|.++++.......-..+++++++|||++||++.. .+.|.+|+.+.
T Consensus 262 i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~-~~~i~v~D~~t 310 (337)
T d1pbyb_ 262 LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA-LGDLAAYDAET 310 (337)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB-SSEEEEEETTT
T ss_pred EEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeC-CCcEEEEECCC
Confidence 77888888876555555567899999999999999865 56799999753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.65 E-value=5.3e-07 Score=78.54 Aligned_cols=175 Identities=11% Similarity=0.115 Sum_probs=98.4
Q ss_pred CCe-EEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEEcCCCeEEEEe
Q psy4771 72 KGD-LYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLI 148 (337)
Q Consensus 72 ~g~-ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~~~~l~ 148 (337)
++. +++...+++|..||..+.+.+.++. .+....|.++++++|| .+||+....+ |..+|.++++.....
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~--------~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCV--------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEE--------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCCEEEEEE--------cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence 444 4488889999999985443333221 1223569999999999 6789986655 999999988766544
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcc---c-------------ccceeeeccc--cCCC------CCCCCccEEEcCCCc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTG---Q-------------TEQLISMDTE--IDGA------KPQIPNSVTVDSDGM 204 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~---~-------------~~~v~~~~~~--~~~~------~~~~pn~v~vd~~G~ 204 (337)
..... .......|..+++++||+.+ . ...+..++.. .... .......+...+++.
T Consensus 79 ~~~~~-~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 79 NLSSV-PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp ESCCS-TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ccccc-ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 32111 11111358889999999876 1 1112212110 0000 011223344445555
Q ss_pred EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 205 VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 205 lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
+|+++. .+..++..+++..........+.++++++++..+|++....+.+.
T Consensus 158 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (346)
T d1jmxb_ 158 LYVAGP-----------------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 208 (346)
T ss_dssp EEEESS-----------------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred EEEeCC-----------------cceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceE
Confidence 665542 345555555554444444455666667777666666655544443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.64 E-value=5.2e-07 Score=83.92 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=102.6
Q ss_pred ccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 110 QCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
.+..|.+|++.++|+|||++...| |++++.++++.+.+......... .
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~-------------------------------~ 73 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND-------------------------------A 73 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC-------------------------------T
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccc-------------------------------c
Confidence 457899999999999999995444 99999888887776642110000 0
Q ss_pred CCCCCCccEEEcCC----CcEEEEcCCCCccCceeeeeecCCccEE--EEcCCCCee---EEEe-----ccccceeeEEE
Q psy4771 189 AKPQIPNSVTVDSD----GMVYWSDSSTKYKSGLFEGLTSGSGRLI--QYNPKTKKN---KVLI-----ANLHFANGVEL 254 (337)
Q Consensus 189 ~~~~~pn~v~vd~~----G~lyvtd~~~~~~~~~~~~~~~~~G~v~--~~d~~~~~~---~~~~-----~~~~~p~gia~ 254 (337)
..-...-||+++|+ +.+|++............. ...-.+. .++...... +.+. .+-++-..|++
T Consensus 74 ~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~f 151 (450)
T d1crua_ 74 DGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKEL--PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVI 151 (450)
T ss_dssp TSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCS--CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEE
T ss_pred CCCCceeeEEeCCCCccCCEEEEEEecCCCCCccccc--ccceEEEeeecccccccccceEEEeecccccccccccceeE
Confidence 01134568999874 7799874321100000000 0000122 222221111 1122 12356678999
Q ss_pred ccCCCEEEEEeCC--------------------------------CCEEEEEEeeCCCC--------CceeeeecCCCCC
Q psy4771 255 SADESFVIVAETM--------------------------------SSRVHRYYLKGPKQ--------GKSEVFIDGLPGL 294 (337)
Q Consensus 255 ~~dg~~lyva~~~--------------------------------~~~I~~~~~~g~~~--------~~~~~~~~~~~g~ 294 (337)
++|| +|||+-.. .+.|+|++.++... ...++++.++-.
T Consensus 152 gpDG-~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RN- 229 (450)
T d1crua_ 152 GPDQ-KIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRN- 229 (450)
T ss_dssp CTTS-CEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSE-
T ss_pred cCCC-CEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEecccc-
Confidence 9999 59998643 27899998876421 123677776655
Q ss_pred CCceeECCCCCEEEEecCC
Q psy4771 295 PDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 295 Pdgi~~d~dG~l~va~~~~ 313 (337)
|.|+++|++|+||++.+..
T Consensus 230 p~g~~~~p~g~l~~~e~G~ 248 (450)
T d1crua_ 230 PQGLAFTPNGKLLQSEQGP 248 (450)
T ss_dssp EEEEEECTTSCEEEEEECS
T ss_pred ccceeecccceeeeccccc
Confidence 9999999999999998865
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.60 E-value=7.6e-07 Score=82.05 Aligned_cols=120 Identities=10% Similarity=0.017 Sum_probs=76.8
Q ss_pred CCcceEEEC--CCC-cEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 112 GRPLGIKFD--KNG-ALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 112 ~~P~Gl~~d--~~G-~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
.+|.....+ +|| .|||+|..+ .|.+||.++++....... .
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i---P--------------------------------- 113 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI---P--------------------------------- 113 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC---T---------------------------------
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec---C---------------------------------
Confidence 356665554 678 899999765 499999999887766531 1
Q ss_pred CCCCCCCccEEEcCCCc-EEEEcCCCCc----cCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEE
Q psy4771 188 GAKPQIPNSVTVDSDGM-VYWSDSSTKY----KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVI 262 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~-lyvtd~~~~~----~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~ly 262 (337)
....|+++++.++|+ +||+...... .++...........+..+|+.+.++..-..--..|.++++++||+++|
T Consensus 114 --~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~ 191 (441)
T d1qnia2 114 --NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYAT 191 (441)
T ss_dssp --TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEE
T ss_pred --CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEE
Confidence 134588888888886 7877654321 000000001111345668888776543332334789999999999999
Q ss_pred EEeCCCC
Q psy4771 263 VAETMSS 269 (337)
Q Consensus 263 va~~~~~ 269 (337)
++....+
T Consensus 192 vt~~nse 198 (441)
T d1qnia2 192 STCYNSE 198 (441)
T ss_dssp EEESCTT
T ss_pred EEecCCC
Confidence 9987653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.60 E-value=8.1e-07 Score=81.34 Aligned_cols=175 Identities=11% Similarity=0.008 Sum_probs=107.0
Q ss_pred CeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEecc
Q psy4771 73 GDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 73 g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~ 150 (337)
+.++ +...+|+|..||..+.+.+..+ +....|.+++|+||| .||++.....+..+|.++++.......
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l----------~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i 101 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVI----------DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEE----------ECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred eEEEEEEcCCCEEEEEECCCCcEEEEE----------eCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE
Confidence 3455 5667899999997544444333 122469999999999 677776545588999988765443321
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEE----cCCCc-EEEEcCCCCccCceeeeeecC
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTV----DSDGM-VYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~v----d~~G~-lyvtd~~~~~~~~~~~~~~~~ 225 (337)
.. ...+.++++ .+||+ +|++....
T Consensus 102 ---~~-----------------------------------~~~~~~~~~s~~~spDG~~l~v~~~~~------------- 130 (426)
T d1hzua2 102 ---KI-----------------------------------GIEARSVESSKFKGYEDRYTIAGAYWP------------- 130 (426)
T ss_dssp ---EC-----------------------------------CSEEEEEEECCSTTCTTTEEEEEEEES-------------
T ss_pred ---eC-----------------------------------CCCCcceEEeeeecCCCCEEEEeecCC-------------
Confidence 00 112334433 46786 66665432
Q ss_pred CccEEEEcCCCCeeEEEec------------cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC
Q psy4771 226 SGRLIQYNPKTKKNKVLIA------------NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~------------~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g 293 (337)
+.+..+|..+++...... .-..+..++.++|+..++++....+++..+............. . ...
T Consensus 131 -~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~ 207 (426)
T d1hzua2 131 -PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G-AAP 207 (426)
T ss_dssp -SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-E-CCS
T ss_pred -CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe-c-cCC
Confidence 245555655554332221 1123456888899999999999999988887654322222222 2 223
Q ss_pred CCCceeECCCCC-EEEEec
Q psy4771 294 LPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 294 ~Pdgi~~d~dG~-l~va~~ 311 (337)
.|.+++++++|+ ++++..
T Consensus 208 ~~~~~~~~~~g~~~~~a~~ 226 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAAN 226 (426)
T ss_dssp SEEEEEECTTSCEEEEEET
T ss_pred ccEeeeECCCCcEEEeeee
Confidence 488999999998 455443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.58 E-value=9.1e-07 Score=76.98 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=91.4
Q ss_pred eEEECCCCcEEEE-ECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCC
Q psy4771 116 GIKFDKNGALHVA-DAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIP 194 (337)
Q Consensus 116 Gl~~d~~G~lyVa-d~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~p 194 (337)
|+++.++|+.+++ .....|..+|.+++++..-.. .. ....|
T Consensus 1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~----~~----------------------------------~~~~p 42 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----MP----------------------------------DKFGP 42 (346)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE----CS----------------------------------SCCSS
T ss_pred CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE----cC----------------------------------CCCCc
Confidence 5678888866555 444569999999887654332 11 12358
Q ss_pred ccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-------ccceeeEEEccCCCEEEEEeC
Q psy4771 195 NSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-------LHFANGVELSADESFVIVAET 266 (337)
Q Consensus 195 n~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyva~~ 266 (337)
.++++++||+ +|++... .+.|..+|..+++....... ...|.++++++||+.+|++..
T Consensus 43 ~~l~~spDG~~l~v~~~~--------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 43 GTAMMAPDNRTAYVLNNH--------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp CEEEECTTSSEEEEEETT--------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred ceEEECCCCCEEEEEECC--------------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence 9999999997 7888754 35899999988876433221 236889999999999999874
Q ss_pred C-----------CCEEEEEEeeCCCCC-ceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 267 M-----------SSRVHRYYLKGPKQG-KSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 267 ~-----------~~~I~~~~~~g~~~~-~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
. ...+..++....+.. ...... .+.....+....+|.+|++..
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T d1jmxb_ 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGSLYVAGP 163 (346)
T ss_dssp EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSCEEEESS
T ss_pred CCcceeeeeccCcceEEEEecccceeeeEEEeee--ccCceEEEEecCCCEEEEeCC
Confidence 2 355666665432111 111111 223345566667777877653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.57 E-value=1.3e-05 Score=70.07 Aligned_cols=231 Identities=12% Similarity=0.021 Sum_probs=120.7
Q ss_pred EEEe--eCCeEEE-E---------ecCcEEEEEeCCceeEEE--ecCccccCccccCccCCcceEEECCCC-cEEEEECC
Q psy4771 67 AVVK--HKGDLYM-G---------VDGGHILKLSGGKLVPVV--KLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY 131 (337)
Q Consensus 67 ~i~~--~~g~ly~-d---------~~~g~I~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~ 131 (337)
++++ ++..||+ + ..++.|..||....+... ..... ........|.+++++++| .+++++..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~~~v~~~~ 126 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA----PRFLVGTYPWMTSLTPDGKTLLFYQFS 126 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC----CCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc----ceeecCCCCceEEEecCCCeeEEecCC
Confidence 5777 4556884 3 235778889874332222 11111 012345679999999998 78888744
Q ss_pred C--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCCC---------C-CCCC
Q psy4771 132 F--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDGA---------K-PQIP 194 (337)
Q Consensus 132 ~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~~---------~-~~~p 194 (337)
. .+..++..+++.................-+..+++.+||+.+ ..+.+.......... . ...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (355)
T d2bbkh_ 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 206 (355)
T ss_dssp SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence 2 366778877765443321000000000013346777787765 122222222111100 0 0111
Q ss_pred ccEE-EcCCCcEEEEcCCCCc--------------------cCceeeeeec--------------------CCccEEEEc
Q psy4771 195 NSVT-VDSDGMVYWSDSSTKY--------------------KSGLFEGLTS--------------------GSGRLIQYN 233 (337)
Q Consensus 195 n~v~-vd~~G~lyvtd~~~~~--------------------~~~~~~~~~~--------------------~~G~v~~~d 233 (337)
..++ ...+|++|+.+..... .++...+... ....|..+|
T Consensus 207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d 286 (355)
T d2bbkh_ 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286 (355)
T ss_dssp TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence 2222 3345667766654321 0000001011 113577888
Q ss_pred CCCCeeEEEeccccceeeEEEccCCCE-EEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCC
Q psy4771 234 PKTKKNKVLIANLHFANGVELSADESF-VIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKG 304 (337)
Q Consensus 234 ~~~~~~~~~~~~~~~p~gia~~~dg~~-lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG 304 (337)
..+++.......-..|.+++++|||+. +|++....+.|.+++...++. ... +.+....|.-|.+..+|
T Consensus 287 ~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~--~~~-i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 287 AKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE--LRS-VNQLGHGPQVITTADMG 355 (355)
T ss_dssp TTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE--EEE-ECCCCSSCCEEECCCCC
T ss_pred CCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE--EEE-EeCcCCCccEEEeCCCC
Confidence 887765444444456899999999974 788888889999999754321 222 22233457777766554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.49 E-value=4.9e-06 Score=76.50 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=104.2
Q ss_pred CccEEEe--eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEEC----CCC-cEEEEECCC-c
Q psy4771 64 GPEAVVK--HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFD----KNG-ALHVADAYF-G 133 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d----~~G-~lyVad~~~-g 133 (337)
.|+++++ ++..+|+...++.|..|+. ++......+ .....|.++++. +|| .||++.... .
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i----------~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~ 132 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 132 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE----------ECCSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE----------ecCCCCCCeEEecccCCCCCEEEEEcCCCCe
Confidence 6999999 4556887778999999985 333222221 233457777664 588 578876544 4
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST 212 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~ 212 (337)
+..+|.++++............ ..+.+. .......++++++|. ++++...
T Consensus 133 v~i~d~~t~~~~~~~~~~~~~~-------~~~~~~---------------------~~~~~~~v~~s~dg~~~~vs~~~- 183 (432)
T d1qksa2 133 YVIMDGETLEPKKIQSTRGMTY-------DEQEYH---------------------PEPRVAAILASHYRPEFIVNVKE- 183 (432)
T ss_dssp EEEEETTTCCEEEEEECCEECT-------TTCCEE---------------------SCCCEEEEEECSSSSEEEEEETT-
T ss_pred EEEEeCccccceeeeccCCccc-------cceecc---------------------CCCceeEEEECCCCCEEEEEEcc-
Confidence 8889998887765543211100 000000 122345677788776 4444433
Q ss_pred CccCceeeeeecCCccEEEEcCCCCeeEEE--eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYNPKTKKNKVL--IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~--~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+.+..+|..+++...+ ......|++++++|||+++|++....+.|..++.+.
T Consensus 184 -------------~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~ 238 (432)
T d1qksa2 184 -------------TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238 (432)
T ss_dssp -------------TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred -------------CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence 45788888766543222 233467999999999999999999999999988753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.47 E-value=5.2e-06 Score=71.07 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=124.4
Q ss_pred ceeccCcccCccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC
Q psy4771 55 EKLFENEIHGPEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF 132 (337)
Q Consensus 55 ~~~~~g~~~~P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~ 132 (337)
.++..|-...=.++++ .++ .|++...+|.|..|+..+.+....+.. .......++++.++|+++++....
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~--------~h~~~v~~v~~~~~g~~~~~~~d~ 76 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD--------VHATMITGIKTTSKGDLFTVSWDD 76 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC--------SCSSCEEEEEECTTSCEEEEETTT
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC--------CCCCcEEEEEeeccceeeccccee
Confidence 3444453334456677 444 566888999999998643333332211 112345789999999998887656
Q ss_pred cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cccceeeeccc--cCCCCCCCCccEEEcCCCcEEE
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTEQLISMDTE--IDGAKPQIPNSVTVDSDGMVYW 207 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~~v~~~~~~--~~~~~~~~pn~v~vd~~G~lyv 207 (337)
.+..++..+............... .+..++++++|+++ ..+.+...... ...........+++.+++++.+
T Consensus 77 ~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 77 HLKVVPAGGSGVDSSKAVANKLSS----QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSS----CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEE
T ss_pred eEEEeccCCccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 677777543321111100001111 25567888888887 22333333211 0000122345677788776443
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE--eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC-CCce
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL--IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK-QGKS 284 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~--~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~-~~~~ 284 (337)
+-. .+|.|..+|..+++.... ...-.....++++++++.|+++.. .+.|..+++.... ....
T Consensus 153 ~g~--------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 153 VGG--------------QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNFELAHT 217 (299)
T ss_dssp EEE--------------TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGTTEESCC
T ss_pred ccc--------------cccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 322 245777777666654332 223345688999999987766654 5678888875421 1111
Q ss_pred eeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 285 EVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 285 ~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..+.. .......++++++|.+.++.
T Consensus 218 ~~~~~-h~~~v~~l~~s~~~~~l~sg 242 (299)
T d1nr0a2 218 NSWTF-HTAKVACVSWSPDNVRLATG 242 (299)
T ss_dssp CCCCC-CSSCEEEEEECTTSSEEEEE
T ss_pred ccccc-cccccccccccccccceEEE
Confidence 11111 11223567788888755543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.42 E-value=1.4e-05 Score=72.25 Aligned_cols=204 Identities=12% Similarity=0.114 Sum_probs=119.9
Q ss_pred cCcccCccEEEee-----CCeEE-EEecCcEEEEEeCCcee--EEEecCccccCccccCccCCcceEEECCCC-cEEEEE
Q psy4771 59 ENEIHGPEAVVKH-----KGDLY-MGVDGGHILKLSGGKLV--PVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVAD 129 (337)
Q Consensus 59 ~g~~~~P~~i~~~-----~g~ly-~d~~~g~I~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad 129 (337)
-|..+.| .+.+. +..+| .|-.++||.|++....+ .+..+ +....++|++...++ ..||+.
T Consensus 82 ~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i----------Pn~~~~HG~r~~~~p~T~YV~~ 150 (459)
T d1fwxa2 82 NGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI----------PNAKGIHGLRPQKWPRSNYVFC 150 (459)
T ss_dssp CCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC----------SSCCSEEEEEECCSSBCSEEEE
T ss_pred CCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec----------CCCCCCceeecccCCCeEEEEc
Confidence 4667788 45553 33578 78899999999975433 34332 455678999998776 778775
Q ss_pred CCC-------------------c-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 130 AYF-------------------G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 130 ~~~-------------------g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
... + +..||.++.++..-+. ..|
T Consensus 151 ~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~----V~g--------------------------------- 193 (459)
T d1fwxa2 151 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL----VSG--------------------------------- 193 (459)
T ss_dssp EECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE----ESS---------------------------------
T ss_pred cCccccccCCCCccccchhhcceEEEEEecCCceEEEEee----eCC---------------------------------
Confidence 211 2 3467777766655442 222
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCC-c----------cCceee--------eee----cCCccEEEEcCCCC---eeEEE
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTK-Y----------KSGLFE--------GLT----SGSGRLIQYNPKTK---KNKVL 242 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~-~----------~~~~~~--------~~~----~~~G~v~~~d~~~~---~~~~~ 242 (337)
.+.+++++++|+ +|+|.-.+. . .+++.. ... ..-+.+-.+|..+. .....
T Consensus 194 ---~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~y 270 (459)
T d1fwxa2 194 ---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY 270 (459)
T ss_dssp ---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEE
T ss_pred ---ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEE
Confidence 245666666665 444432211 0 011100 000 00124556665432 22223
Q ss_pred eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC-------CCCCceeeeecC-CCCCCCceeECCCCCEEEEecCC
Q psy4771 243 IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG-------PKQGKSEVFIDG-LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 243 ~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g-------~~~~~~~~~~~~-~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..-...|+|+.++|||+++||+...++.+.+++.+- ...-...+.++. +.-.|==-++|.+|+.|++++..
T Consensus 271 IPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfid 349 (459)
T d1fwxa2 271 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD 349 (459)
T ss_dssp EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTT
T ss_pred EecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeecc
Confidence 344567999999999999999999999999999851 111111222221 11125566889999999998765
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.33 E-value=2.3e-05 Score=68.24 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=102.2
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc--EEEEEcCCCeEEEEe
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG--LYKVNVTTGQTEQLI 148 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g--v~~vd~~~g~~~~l~ 148 (337)
+|.+++....|+|+.++..+...+ .++ ..++..++++.||| .|+++....+ |+..|.++++.+.+.
T Consensus 14 dG~~~a~~~~g~v~v~d~~~~~~~-~~~----------~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~ 82 (360)
T d1k32a3 14 DGDLIAFVSRGQAFIQDVSGTYVL-KVP----------EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE 82 (360)
T ss_dssp GGGCEEEEETTEEEEECTTSSBEE-ECS----------CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred CCCEEEEEECCeEEEEECCCCcEE-Ecc----------CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee
Confidence 666665556788999876332222 222 23567899999999 5555543443 778888888777654
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCcc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
. .....+.+++++||+..++... .+.
T Consensus 83 ~----------------------------------------~~~~v~~~~~spdg~~l~~~~~--------------~~~ 108 (360)
T d1k32a3 83 E----------------------------------------NLGNVFAMGVDRNGKFAVVAND--------------RFE 108 (360)
T ss_dssp C----------------------------------------CCCSEEEEEECTTSSEEEEEET--------------TSE
T ss_pred C----------------------------------------CCceEEeeeecccccccceecc--------------ccc
Confidence 2 1233678999999984443332 346
Q ss_pred EEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCC---------CCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 229 LIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETM---------SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 229 v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~---------~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
++.++.++++...... .......++++|||+.|.++... .+.+..++..+. ....... ..+....+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~~-~~~~~~~~ 184 (360)
T d1k32a3 109 IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---KIFAATT-ENSHDYAP 184 (360)
T ss_dssp EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---EEEECSC-SSSBEEEE
T ss_pred cccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC---ceeeecc-cccccccc
Confidence 7788887776654443 33456789999999988765422 234555665432 2222111 22223457
Q ss_pred eECCCCCEEE
Q psy4771 299 KRDSKGNFLV 308 (337)
Q Consensus 299 ~~d~dG~l~v 308 (337)
++.+||+..+
T Consensus 185 ~~spdg~~l~ 194 (360)
T d1k32a3 185 AFDADSKNLY 194 (360)
T ss_dssp EECTTSCEEE
T ss_pred cccCCCCEEE
Confidence 7888887333
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.30 E-value=3.6e-05 Score=68.43 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCC-Cee--EEEeccccceeeEEEccCCCEEEEEe
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT-KKN--KVLIANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~-~~~--~~~~~~~~~p~gia~~~dg~~lyva~ 265 (337)
.+.+||||++++|++ |||++.... +|++|+.+. ++. .....-...|.+|.+++++..+|++.
T Consensus 204 ~l~~pNGI~~s~d~~~lyVa~t~~~--------------~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 204 GFDFANGINISPDGKYVYIAELLAH--------------KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGT--------------EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CCCccceeEECCCCCEEEEEeCCCC--------------eEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 367899999999985 999998643 666655432 222 12222334699999987555688885
Q ss_pred CCC--------------CEEEEEEeeCCCCCc-eeeeecCCCCC-CCceeECCCCCEEEEecC
Q psy4771 266 TMS--------------SRVHRYYLKGPKQGK-SEVFIDGLPGL-PDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 266 ~~~--------------~~I~~~~~~g~~~~~-~~~~~~~~~g~-Pdgi~~d~dG~l~va~~~ 312 (337)
... ..+.++.......+. .+++.+...-+ --..++-.+|+||++...
T Consensus 270 ~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~~G~~~~~~T~a~~~~g~L~iGs~~ 332 (340)
T d1v04a_ 270 HPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVF 332 (340)
T ss_dssp ESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSSCSEEEEEEETTEEEEEESS
T ss_pred CCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeCCCcEeeceEEEEEECCEEEEEeee
Confidence 321 235555432222222 33444311011 123344457889998743
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.23 E-value=2.5e-06 Score=76.11 Aligned_cols=122 Identities=11% Similarity=-0.056 Sum_probs=82.5
Q ss_pred CCcceEEECCCC-cEEEEECC--C---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccc
Q psy4771 112 GRPLGIKFDKNG-ALHVADAY--F---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTE 185 (337)
Q Consensus 112 ~~P~Gl~~d~~G-~lyVad~~--~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~ 185 (337)
+.+..++..++| +.||+... . .++.+|.++++......
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~------------------------------------ 63 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------------------------ 63 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------------------------
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe------------------------------------
Confidence 334455666777 66666422 2 38999999888665542
Q ss_pred cCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--------cccceeeEEEcc
Q psy4771 186 IDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--------NLHFANGVELSA 256 (337)
Q Consensus 186 ~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--------~~~~p~gia~~~ 256 (337)
..+...+++.+||+ ||+++..... ......++.|..+|+.+++...... ....|.++++++
T Consensus 64 -----~~~~~~~a~spDg~~i~~~~~~~~~-----~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp 133 (368)
T d1mdah_ 64 -----GAFLSLAVAGHSGSDFALASTSFAR-----SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp -----ECTTCEEEECTTSSCEEEEEEEETT-----TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred -----CCCCCcceECCCCCEEEEEcccCcc-----ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC
Confidence 11234789999997 8887653210 0012234579999998887543221 234688999999
Q ss_pred CCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 257 DESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 257 dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
||++|||++...+.|..+++...
T Consensus 134 DGk~l~va~~~~~~v~~~d~~~~ 156 (368)
T d1mdah_ 134 SSACLLFFLFGSSAAAGLSVPGA 156 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTT
T ss_pred CCCEEEEEeCCCCeEEEEECCCC
Confidence 99999999998899999998654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.20 E-value=0.00011 Score=64.02 Aligned_cols=186 Identities=10% Similarity=-0.046 Sum_probs=101.9
Q ss_pred CCeEE-EEe----cCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC----------CcEE
Q psy4771 72 KGDLY-MGV----DGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY----------FGLY 135 (337)
Q Consensus 72 ~g~ly-~d~----~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~----------~gv~ 135 (337)
+..+| ++. ..++|+.||..+.+.+..+ .. +...++++++|| .|||++.. ..|.
T Consensus 13 g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~----------~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 13 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI----------DG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEE----------EE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEecccCCCcCeEEEEECCCCcEEEEE----------EC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 45566 332 2346888876443333222 11 223379999999 68888632 2388
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCc
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKY 214 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~ 214 (337)
.+|..+++....... ..... ......|+.++++++|+ +|+++....
T Consensus 82 v~D~~t~~~~~~~~~---~~~~~-----------------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~- 128 (355)
T d2bbkh_ 82 VFDPVTLLPTADIEL---PDAPR-----------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPA- 128 (355)
T ss_dssp EECTTTCCEEEEEEE---TTCCC-----------------------------CCBSCCGGGEEECTTSSEEEEEECSSS-
T ss_pred EEECCCCCEEEEEec---CCcce-----------------------------eecCCCCceEEEecCCCeeEEecCCCC-
Confidence 889988876554431 11100 00234688999999986 787765432
Q ss_pred cCceeeeeecCCccEEEEcCCCCeeEEEec--------cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceee
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--------NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--------~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~ 286 (337)
..+..++..+++...... .......+++++|++.+++.......+..++...........
T Consensus 129 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 196 (355)
T d2bbkh_ 129 ------------PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196 (355)
T ss_dssp ------------CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred ------------ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce
Confidence 234444544444322111 112334588999999999998888887777764322211111
Q ss_pred eecC-CCCCCCce-eECCCCCEEEEecCC
Q psy4771 287 FIDG-LPGLPDNV-KRDSKGNFLVSLVCP 313 (337)
Q Consensus 287 ~~~~-~~g~Pdgi-~~d~dG~l~va~~~~ 313 (337)
+... ....+..+ ....+|++|+.....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 225 (355)
T d2bbkh_ 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSS 225 (355)
T ss_dssp CSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred eeeccccCCCCeEEEecCCCeEEEEecCC
Confidence 1000 00112223 335567788877554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.06 E-value=0.00021 Score=62.61 Aligned_cols=118 Identities=6% Similarity=-0.107 Sum_probs=76.2
Q ss_pred cceEEECCCC-cEEEEECC----------CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeee
Q psy4771 114 PLGIKFDKNG-ALHVADAY----------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISM 182 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~----------~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~ 182 (337)
+.++++.||| .||++... ..|..+|..+++....... .... . .
T Consensus 68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~-----~-~----------------- 121 (373)
T d2madh_ 68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL---PDAP-----R-F----------------- 121 (373)
T ss_pred CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec---CCcc-----e-e-----------------
Confidence 3479999999 77887532 1277788887776544421 0000 0 0
Q ss_pred ccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEE
Q psy4771 183 DTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFV 261 (337)
Q Consensus 183 ~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~l 261 (337)
.....|.++++.++|+ +|+.... ..+.+..++..+++. ......|.+++++++|+.+
T Consensus 122 ------~~~~~~~~~~~s~dg~~~~v~~~~-------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~~ 179 (373)
T d2madh_ 122 ------DVGPYSWMNANTPNNADLLFFQFA-------------AGPAVGLVVQGGSSD---DQLLSSPTCYHIHPGAPST 179 (373)
T ss_pred ------EeccCCCcEEEEeCCCcEEEEEEc-------------CCCceEEeeccCCeE---EEEeccceeEEEecCCCcE
Confidence 0234578888888876 6655432 123445555544443 2334468899999999999
Q ss_pred EEEeCCCCEEEEEEeeCC
Q psy4771 262 IVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 262 yva~~~~~~I~~~~~~g~ 279 (337)
|++....+.+.+++..+.
T Consensus 180 ~v~~~~dg~~~~~~~~~~ 197 (373)
T d2madh_ 180 FYLLCAQGGLAKTDHAGG 197 (373)
T ss_pred EEEEcCCCeEEEEEcCCc
Confidence 999999999999987654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.00 E-value=0.0007 Score=61.03 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=98.3
Q ss_pred cCccEEEe--eCCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEEC----CCC-cEEEEECC-C
Q psy4771 63 HGPEAVVK--HKGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFD----KNG-ALHVADAY-F 132 (337)
Q Consensus 63 ~~P~~i~~--~~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d----~~G-~lyVad~~-~ 132 (337)
..|.++++ ++..+|+...++.|..|+. ++......+ ..+..|.++.++ +|| .||++... +
T Consensus 62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i----------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~ 131 (426)
T d1hzua2 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI----------KIGIEARSVESSKFKGYEDRYTIAGAYWPP 131 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE----------ECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE----------eCCCCCcceEEeeeecCCCCEEEEeecCCC
Confidence 36999999 4556788888999999986 333332222 222346666665 588 57787644 3
Q ss_pred cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCC
Q psy4771 133 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS 211 (337)
Q Consensus 133 gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~ 211 (337)
.+..+|.+++........... . +..+++. .-..+..++..+++. +|++...
T Consensus 132 ~v~i~d~~~~~~~~~~~~~~~--~-----~~~~~~~---------------------~~~~~~~i~~s~d~~~~~~~~~~ 183 (426)
T d1hzua2 132 QFAIMDGETLEPKQIVSTRGM--T-----VDTQTYH---------------------PEPRVAAIIASHEHPEFIVNVKE 183 (426)
T ss_dssp EEEEEETTTCCEEEEEECCEE--C-----SSSCCEE---------------------SCCCEEEEEECSSSSEEEEEETT
T ss_pred eEEEEcCCccceeEEeeccCC--C-----ccceeec---------------------CCCceeEEEECCCCCEEEEecCC
Confidence 477788888776655431100 0 0001100 112234556666665 5544443
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCee--EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKN--KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+.+..++..++.. .........|.+++++++++++|++....+.+..++...
T Consensus 184 --------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~ 238 (426)
T d1hzua2 184 --------------TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD 238 (426)
T ss_dssp --------------TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred --------------CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence 23455544433321 122344567999999999999999999999999988753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.00 E-value=4.3e-05 Score=66.36 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=90.0
Q ss_pred EEECC-CCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCc
Q psy4771 117 IKFDK-NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPN 195 (337)
Q Consensus 117 l~~d~-~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn 195 (337)
--|.| ||+++.+.....|+.+|.+++.+..+.. .....
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~-----------------------------------------~~~v~ 46 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE-----------------------------------------PLRIR 46 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEECSC-----------------------------------------CSCEE
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEEccC-----------------------------------------CCCEE
Confidence 34677 7877666554568888888887766531 12367
Q ss_pred cEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 196 SVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 196 ~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
+++++|||+ |+++.... ...|+.+|.++++...+.........++++|||+.|.++. ..+.++.+
T Consensus 47 ~~~~spDg~~l~~~~~~~-------------g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~ 112 (360)
T d1k32a3 47 YVRRGGDTKVAFIHGTRE-------------GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTV 112 (360)
T ss_dssp EEEECSSSEEEEEEEETT-------------EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred EEEECCCCCEEEEEEcCC-------------CCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceec-cccccccc
Confidence 899999997 54443221 1267888998888877777777788999999998776665 45778888
Q ss_pred EeeCCCCCceeeeecCCCCCCCceeECCCCCEEE
Q psy4771 275 YLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLV 308 (337)
Q Consensus 275 ~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~v 308 (337)
++++... ...+ .........+++.+||+..+
T Consensus 113 ~~~~~~~--~~~~-~~~~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 113 DLETGKP--TVIE-RSREAMITDFTISDNSRFIA 143 (360)
T ss_dssp ETTTCCE--EEEE-ECSSSCCCCEEECTTSCEEE
T ss_pred cccccce--eeee-ecccccccchhhccceeeee
Confidence 8765422 1222 22333457788999987544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.00082 Score=59.16 Aligned_cols=213 Identities=11% Similarity=0.014 Sum_probs=111.8
Q ss_pred cEEEe-eCCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcC
Q psy4771 66 EAVVK-HKGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVT 140 (337)
Q Consensus 66 ~~i~~-~~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~ 140 (337)
.++++ .++.+. +...++.|..|+. ++...+..+. ...+....|+++++|+++++-... .|...|.+
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~---------gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK---------EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE---------CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec---------CCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 45666 455544 7888888877764 4444443332 112335789999999766654333 47777776
Q ss_pred CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cccc-ee--eecccc--------CCCCCCCCccEEEcCCCcEE
Q psy4771 141 TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTEQ-LI--SMDTEI--------DGAKPQIPNSVTVDSDGMVY 206 (337)
Q Consensus 141 ~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~~-v~--~~~~~~--------~~~~~~~pn~v~vd~~G~ly 206 (337)
++......... .... ....++++++|+.+ ..++ +. .+.... ...--.....++++|+|.+.
T Consensus 82 ~~~~~~~~~~~-~~~~----~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l 156 (371)
T d1k8kc_ 82 GRTWKPTLVIL-RINR----AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156 (371)
T ss_dssp TTEEEEEEECC-CCSS----CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ccccccccccc-cccc----cccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccce
Confidence 66654433210 0111 13557788888876 2222 22 222110 00011234678888888765
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCe------------------e-EEEeccccceeeEEEccCCCEEEEEeCC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK------------------N-KVLIANLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~------------------~-~~~~~~~~~p~gia~~~dg~~lyva~~~ 267 (337)
++-.. +|.+..++...+. . ..........++++++|||+.|+.+. .
T Consensus 157 ~s~s~--------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~ 221 (371)
T d1k8kc_ 157 AAGSC--------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-H 221 (371)
T ss_dssp EEEET--------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-T
T ss_pred ecccc--------------CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc-c
Confidence 54322 2233333322111 1 11112233467899999998776654 4
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
.+.|..+++.... ....+.. ...-...+++.++|.+.++.
T Consensus 222 d~~i~iwd~~~~~--~~~~~~~-~~~~v~s~~fs~d~~~la~g 261 (371)
T d1k8kc_ 222 DSTVCLADADKKM--AVATLAS-ETLPLLAVTFITESSLVAAG 261 (371)
T ss_dssp TTEEEEEEGGGTT--EEEEEEC-SSCCEEEEEEEETTEEEEEE
T ss_pred CCcceEEeeeccc--ceeeeec-ccccceeeeecCCCCEEEEE
Confidence 6788888876432 1122221 11112467777777665553
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00047 Score=59.83 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=88.6
Q ss_pred cEEEe-eC-CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEE-ECCCcEEEEEcCCC
Q psy4771 66 EAVVK-HK-GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVA-DAYFGLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~-~~-g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVa-d~~~gv~~vd~~~g 142 (337)
.++++ .+ ..+++...++.|..|+..+...+..+. .......++++++++.+++ .....+..+|.+++
T Consensus 187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred ccccccccccccccccccccccccccccceeecccc----------cccceEEEEEcccccccceecccccccccccccc
Confidence 34455 33 345566777777777653322232221 1234678899998855554 43344777787666
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
+...... .-...+.++++++|+..++-..
T Consensus 257 ~~~~~~~----------------------------------------~~~~i~~v~~s~~g~~l~s~s~----------- 285 (337)
T d1gxra_ 257 DKYQLHL----------------------------------------HESCVLSLKFAYCGKWFVSTGK----------- 285 (337)
T ss_dssp CEEEECC----------------------------------------CSSCEEEEEECTTSSEEEEEET-----------
T ss_pred ccccccc----------------------------------------cccccceEEECCCCCEEEEEeC-----------
Confidence 5433221 1123678899999886655432
Q ss_pred ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
+|.|..+|..+++.......-.....+++++|+++|+.+. ..+.|..+++
T Consensus 286 ---Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s-~D~~I~vWdl 335 (337)
T d1gxra_ 286 ---DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS-GDKKATVYEV 335 (337)
T ss_dssp ---TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred ---CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEE
Confidence 4577888877776544444555678899999998766544 4567777764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.0014 Score=56.57 Aligned_cols=140 Identities=6% Similarity=-0.057 Sum_probs=84.3
Q ss_pred CCcceEEECCCCcEEE-EECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHV-ADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyV-ad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
.....+++.++|..++ +.....+..+|..+++...... .
T Consensus 184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----~------------------------------------ 223 (337)
T d1gxra_ 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----F------------------------------------ 223 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----C------------------------------------
T ss_pred cccccccccccccccccccccccccccccccceeecccc----c------------------------------------
Confidence 3456788888884444 4433347777877665433221 1
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
......++++++++..++-. .+|.+..+|..+++.......-...+.+++++|++.|+.+. ..+.
T Consensus 224 ~~~i~~l~~~~~~~~l~~~~--------------~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s-~Dg~ 288 (337)
T d1gxra_ 224 TSQIFSLGYCPTGEWLAVGM--------------ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNL 288 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEE--------------TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE-TTSE
T ss_pred ccceEEEEEcccccccceec--------------cccccccccccccccccccccccccceEEECCCCCEEEEEe-CCCe
Confidence 12357788888887544332 23577777777666544444445568999999998665544 4578
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
|..++....+. ... .. ..+....++++++|++.++.
T Consensus 289 i~iwd~~~~~~--~~~-~~-~~~~v~~~~~s~d~~~l~t~ 324 (337)
T d1gxra_ 289 LNAWRTPYGAS--IFQ-SK-ESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp EEEEETTTCCE--EEE-EE-CSSCEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCCE--EEE-cc-CCCCEEEEEEeCCCCEEEEE
Confidence 88888653211 111 11 12335678899999865543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.68 E-value=0.00092 Score=57.59 Aligned_cols=148 Identities=12% Similarity=0.042 Sum_probs=83.3
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
.....+++.|+|+++++-...+ |...|..++....... ..+ .
T Consensus 59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~----~~~---------------------------------~ 101 (311)
T d1nr0a1 59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT----IPV---------------------------------F 101 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE----EEC---------------------------------S
T ss_pred CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc----ccc---------------------------------c
Confidence 4467899999997766644444 7777766543211110 000 0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
-....+++++++|..+++-.... ...+..++.++++.. .+.......+.++++|+++.++++-...+
T Consensus 102 ~~~v~~v~~s~d~~~l~~~~~~~------------~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 102 SGPVKDISWDSESKRIAAVGEGR------------ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp SSCEEEEEECTTSCEEEEEECCS------------SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred cCccccccccccccccccccccc------------cccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 12357899999988555443211 112333343344332 22222345688999999987777776678
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.|..++.... ...............++.+++|++.++..
T Consensus 170 ~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~ 208 (311)
T d1nr0a1 170 TVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTG 208 (311)
T ss_dssp CEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccc---ccccccccccccccccccCcccccccccc
Confidence 8888886532 11111221122246788888888665543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.60 E-value=0.0024 Score=53.65 Aligned_cols=149 Identities=14% Similarity=0.153 Sum_probs=87.4
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCC
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTT 141 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~ 141 (337)
.+.++++ .++.+.+...++.+..++.++..... .......+++.++++++++-.. ..+..+|.++
T Consensus 101 ~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~ 167 (299)
T d1nr0a2 101 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP-------------ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 167 (299)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE-------------CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred cccccccccccccccccccccccccccccccccc-------------ccccccccccccccccccccccccccccccccc
Confidence 4556666 45555544455667777765543321 1133567899999865554333 3477777776
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
++...+... . .-...+.++++++|...++...
T Consensus 168 ~~~~~~~~~----~----------------------------------~~~~i~~~~~~~~~~~l~~~~~---------- 199 (299)
T d1nr0a2 168 ASVSEVKTI----V----------------------------------HPAEITSVAFSNNGAFLVATDQ---------- 199 (299)
T ss_dssp TEEEEEEEE----E----------------------------------CSSCEEEEEECTTSSEEEEEET----------
T ss_pred ccccccccc----c----------------------------------cccccccccccccccccccccc----------
Confidence 665443321 0 1123578899998875544322
Q ss_pred eecCCccEEEEcCCCCeeEEEec----cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 222 LTSGSGRLIQYNPKTKKNKVLIA----NLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~~~~~~~----~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..++....... .-...+.++++|+++.|+.+. ..+.|..+++..
T Consensus 200 ----d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs-~dg~i~iwd~~~ 255 (299)
T d1nr0a2 200 ----SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS-LDNSVIVWNMNK 255 (299)
T ss_dssp ----TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTC
T ss_pred ----ccccccccccccccccccccccccccccccccccccccceEEEc-CCCEEEEEECCC
Confidence 3467777765543221111 123457899999998666554 456888888764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.52 E-value=0.0078 Score=51.43 Aligned_cols=181 Identities=16% Similarity=0.097 Sum_probs=102.0
Q ss_pred ccEEEe-eCCeE-EEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC--Cc-EEEE
Q psy4771 65 PEAVVK-HKGDL-YMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY--FG-LYKV 137 (337)
Q Consensus 65 P~~i~~-~~g~l-y~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~--~g-v~~v 137 (337)
-.++++ .+|.+ .++..+|.|..|+.. +......+. ........++++++|..+++-.. .. +...
T Consensus 61 v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~ 131 (311)
T d1nr0a1 61 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP---------VFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE---------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred EEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc---------cccCcccccccccccccccccccccccccccc
Confidence 355556 45554 488899999988752 221111111 11234678999999966555332 12 4445
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~ 216 (337)
+.++++.... ..+ .....+.++++++|. ++++..
T Consensus 132 ~~~~~~~~~~------l~~---------------------------------h~~~v~~v~~~~~~~~~l~sgs------ 166 (311)
T d1nr0a1 132 LFDTGTSNGN------LTG---------------------------------QARAMNSVDFKPSRPFRIISGS------ 166 (311)
T ss_dssp ETTTCCBCBC------CCC---------------------------------CSSCEEEEEECSSSSCEEEEEE------
T ss_pred cccccccccc------ccc---------------------------------cccccccccccccceeeecccc------
Confidence 5554432111 111 112357888988876 444432
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec---CC-
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID---GL- 291 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~---~~- 291 (337)
.+|.|..+|..+++....... -...+.++++|+++.++++. ..+.|..++..... ....+-. ..
T Consensus 167 --------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~--~~~~~~~~~~~~~ 235 (311)
T d1nr0a1 167 --------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGT--KTGVFEDDSLKNV 235 (311)
T ss_dssp --------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCC--EEEECBCTTSSSC
T ss_pred --------cccccccccccccccccccccccccccccccCcccccccccc-cccccccccccccc--ccccccccccccc
Confidence 245788888887765544443 33458999999998666655 35678888865321 1111111 01
Q ss_pred --CCCCCceeECCCCCEEEEe
Q psy4771 292 --PGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 292 --~g~Pdgi~~d~dG~l~va~ 310 (337)
.+....++++++|++.++.
T Consensus 236 ~h~~~V~~~~~s~~~~~l~tg 256 (311)
T d1nr0a1 236 AHSGSVFGLTWSPDGTKIASA 256 (311)
T ss_dssp SSSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccCCCCCEEEEE
Confidence 1123567888998865554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.0048 Score=52.01 Aligned_cols=138 Identities=11% Similarity=-0.032 Sum_probs=83.8
Q ss_pred EEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccc
Q psy4771 75 LYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTE 153 (337)
Q Consensus 75 ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~ 153 (337)
+.+...++.|..|+..+...+..+. ........++++++|+++++-...+ +..++............
T Consensus 199 ~~~~~~d~~v~i~d~~~~~~~~~~~---------~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~--- 266 (340)
T d1tbga_ 199 FVSGACDASAKLWDVREGMCRQTFT---------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--- 266 (340)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---
T ss_pred eEEeecCceEEEEECCCCcEEEEEe---------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc---
Confidence 3477788888888764333333321 1123467899999997666544444 77778765554333221
Q ss_pred cCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEc
Q psy4771 154 IDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYN 233 (337)
Q Consensus 154 ~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d 233 (337)
.. .......++++++|++.++-.. +|.|..+|
T Consensus 267 -~~---------------------------------~~~~i~~~~~s~~~~~l~~g~~--------------dg~i~iwd 298 (340)
T d1tbga_ 267 -DN---------------------------------IICGITSVSFSKSGRLLLAGYD--------------DFNCNVWD 298 (340)
T ss_dssp -TT---------------------------------CCSCEEEEEECSSSCEEEEEET--------------TSCEEEEE
T ss_pred -cc---------------------------------ccCceEEEEECCCCCEEEEEEC--------------CCEEEEEE
Confidence 00 1233577889999886554332 46788888
Q ss_pred CCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 234 PKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 234 ~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..+++......+ -..-+++++++|++.|+.+. ..+.|..
T Consensus 299 ~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s-~Dg~v~i 338 (340)
T d1tbga_ 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS-WDSFLKI 338 (340)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSCEEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc-cCCEEEE
Confidence 877765444433 34568899999998666544 3455544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.42 E-value=0.0035 Score=51.99 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=35.8
Q ss_pred CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK 280 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~ 280 (337)
...||.+|+++++.+.+...- ......+++||+.|++.. .+.|+++++++++
T Consensus 213 ~~~l~~~d~~g~~~~~lt~~~-~~~~~~~SpDG~~I~f~~--~~~l~~~d~~~g~ 264 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK--GGSIYIFNPDTEK 264 (281)
T ss_dssp SCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE--TTEEEEECTTTCC
T ss_pred ccceEEEeCCCCceEEeecCC-CcccccCcCCCCEEEEEe--CCEEEEEECCCCC
Confidence 347899999888776554332 223346889999988866 4589999887543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.38 E-value=0.0017 Score=58.37 Aligned_cols=118 Identities=6% Similarity=0.016 Sum_probs=72.2
Q ss_pred ccCCcceEEECC---CC-cEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeecc
Q psy4771 110 QCGRPLGIKFDK---NG-ALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDT 184 (337)
Q Consensus 110 ~~~~P~Gl~~d~---~G-~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~ 184 (337)
-+.+| .+.+.. || .|||.|..+ +|.+||.++-+...+... .
T Consensus 84 D~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i---P------------------------------ 129 (459)
T d1fwxa2 84 DLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI---P------------------------------ 129 (459)
T ss_dssp CBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC---S------------------------------
T ss_pred CcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec---C------------------------------
Confidence 34556 444443 67 789999765 599999998887766641 1
Q ss_pred ccCCCCCCCCccEEEcCCCc-EEEEcCCCCc----cCc--eeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccC
Q psy4771 185 EIDGAKPQIPNSVTVDSDGM-VYWSDSSTKY----KSG--LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSAD 257 (337)
Q Consensus 185 ~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~----~~~--~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~d 257 (337)
....++++.+..+++ .||...+... .++ +... ..-.+.+..+|.++.++..-..--..+.++++++|
T Consensus 130 -----n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~-~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~d 203 (459)
T d1fwxa2 130 -----NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV-ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYE 203 (459)
T ss_dssp -----SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG-G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSS
T ss_pred -----CCCCCceeecccCCCeEEEEccCccccccCCCCccccch-hhcceEEEEEecCCceEEEEeeeCCChhccccCCC
Confidence 133466777766554 6666543211 000 0000 11224567889888876443322346889999999
Q ss_pred CCEEEEEeCC
Q psy4771 258 ESFVIVAETM 267 (337)
Q Consensus 258 g~~lyva~~~ 267 (337)
|+++|++...
T Consensus 204 GK~af~TsyN 213 (459)
T d1fwxa2 204 GKWAFSTSYN 213 (459)
T ss_dssp SSEEEEEESC
T ss_pred CCEEEEEecc
Confidence 9999998754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.19 E-value=0.0065 Score=53.07 Aligned_cols=144 Identities=9% Similarity=-0.031 Sum_probs=83.3
Q ss_pred ceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 115 LGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
..++++++|+++++-...+ |...|.++++...+.. ..|- -..
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~----l~gH---------------------------------~~~ 53 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEH---------------------------------NGQ 53 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE----EECC---------------------------------SSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEE----ecCC---------------------------------CCC
Confidence 5899999997766544445 7777877776544432 1110 123
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe---ccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI---ANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~---~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
.+.++++++|+..++-.. +|.|..+|..+++..... ..-.....++++|+++.++++.. .+.
T Consensus 54 V~~l~fsp~~~~l~s~s~--------------D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~-d~~ 118 (371)
T d1k8kc_ 54 VTGVDWAPDSNRIVTCGT--------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-SRV 118 (371)
T ss_dssp EEEEEEETTTTEEEEEET--------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-TSS
T ss_pred EEEEEECCCCCEEEEEEC--------------CCeEEEEeecccccccccccccccccccccccccccccceeecc-cCc
Confidence 688999999886554332 345666665555433222 22345688999999987777654 456
Q ss_pred EEEEEeeCCCCCce-eeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 271 VHRYYLKGPKQGKS-EVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 271 I~~~~~~g~~~~~~-~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
|..++++....... ........+....++++++|++.++.
T Consensus 119 i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ceeeeeecccccccccccccccccccccccccccccceecc
Confidence 66666654322111 11111122223457778888765543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.09 E-value=0.061 Score=46.10 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=96.5
Q ss_pred cEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccC---------ccccCccCCcceEEECCCCcEEEEECCCc-
Q psy4771 66 EAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYG---------FKYEQQCGRPLGIKFDKNGALHVADAYFG- 133 (337)
Q Consensus 66 ~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~---------~~~~~~~~~P~Gl~~d~~G~lyVad~~~g- 133 (337)
.++++ .+|.+. ++ .++.|..|+..+...+..+...... .........-..+++.++|+++++-...+
T Consensus 66 ~~l~fs~dg~~lasg-~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~ 144 (388)
T d1erja_ 66 CCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144 (388)
T ss_dssp CEEEECTTSSEEEEE-CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCCEEEEE-eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccc
Confidence 35666 566655 55 4788888876333222222111000 00001122346899999997666644444
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
|...|...++...... + .......+++.+++...++..
T Consensus 145 v~i~~~~~~~~~~~~~------~---------------------------------h~~~v~~~~~~~~~~~~~~~~--- 182 (388)
T d1erja_ 145 IRIWDIENRKIVMILQ------G---------------------------------HEQDIYSLDYFPSGDKLVSGS--- 182 (388)
T ss_dssp EEEEETTTTEEEEEEC------C---------------------------------CSSCEEEEEECTTSSEEEEEE---
T ss_pred cccccccccccccccc------c---------------------------------ccccccccccccccccccccc---
Confidence 7777877665444332 1 112345677777765333222
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEcc-CCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec---
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA-DESFVIVAETMSSRVHRYYLKGPKQGKSEVFID--- 289 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~--- 289 (337)
..|.+..+|..+...............+++.+ +++.|+ +....+.|..++...... ...+..
T Consensus 183 -----------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~--~~~~~~~~~ 248 (388)
T d1erja_ 183 -----------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA-AGSLDRAVRVWDSETGFL--VERLDSENE 248 (388)
T ss_dssp -----------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE-EEETTSCEEEEETTTCCE--EEEEC----
T ss_pred -----------cceeeeeeeccccccccccccccccccccccCCCCCeEE-EEcCCCeEEEeecccCcc--ceeeccccc
Confidence 23467777777665544444444555666665 565444 444456788877653211 111110
Q ss_pred ---CCCCCCCceeECCCCCEEEEe
Q psy4771 290 ---GLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 290 ---~~~g~Pdgi~~d~dG~l~va~ 310 (337)
...+....+++.++|++.++.
T Consensus 249 ~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 249 SGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEE
T ss_pred cccCCCCCEEEEEECCCCCEEEEE
Confidence 011223567788888755543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.06 E-value=0.051 Score=44.39 Aligned_cols=82 Identities=7% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
.+|.|..+|..+++...... .-.....++++++++.|+.+. ..+.|..+++...+. ...+.. ..+....+++.++
T Consensus 225 ~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~-h~~~V~~~~~s~~ 300 (317)
T d1vyhc1 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKRC--MKTLNA-HEHFVTSLDFHKT 300 (317)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-TTTEEEEECCTTSCC--CEEEEC-CSSCEEEEEECSS
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE-CCCeEEEEECCCCcE--EEEEcC-CCCCEEEEEEcCC
Confidence 45677777877776433332 234557899999998666554 467899998764322 223322 2233567888898
Q ss_pred CCEEEEe
Q psy4771 304 GNFLVSL 310 (337)
Q Consensus 304 G~l~va~ 310 (337)
|++.++.
T Consensus 301 ~~~l~s~ 307 (317)
T d1vyhc1 301 APYVVTG 307 (317)
T ss_dssp SSCEEEE
T ss_pred CCEEEEE
Confidence 8755543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.65 E-value=0.012 Score=53.00 Aligned_cols=122 Identities=8% Similarity=0.005 Sum_probs=78.9
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
+..+.+-++|.++..+ ..+++.+|..+++...+.... .... ....
T Consensus 19 ~~~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~-~~~~---------------------------------~~~~ 63 (470)
T d2bgra1 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENS-TFDE---------------------------------FGHS 63 (470)
T ss_dssp CCCCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTT-TTTT---------------------------------SSSC
T ss_pred ccCCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchh-hhhh---------------------------------ccCc
Confidence 4456777788665554 466999999999877766421 1111 1234
Q ss_pred CccEEEcCCCc-EEEEcC-CCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 194 PNSVTVDSDGM-VYWSDS-STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~-~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
..++.++|||+ |.++.. ...+ .+...|.++.+|.++++...+...-.....+.++|||+.|.... .+.+
T Consensus 64 i~~~~~SpDg~~i~~~~~~~~~~-------r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l 134 (470)
T d2bgra1 64 INDYSISPDGQFILLEYNYVKQW-------RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDI 134 (470)
T ss_dssp CCEEEECTTSSEEEEEEEEEECS-------SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEE
T ss_pred cceeEECCCCCEEEEEECCccee-------eeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccc
Confidence 67899999997 444332 1111 12335688999999998765554444567789999999877654 4577
Q ss_pred EEEEeeCC
Q psy4771 272 HRYYLKGP 279 (337)
Q Consensus 272 ~~~~~~g~ 279 (337)
+..+..++
T Consensus 135 ~~~~~~~g 142 (470)
T d2bgra1 135 YVKIEPNL 142 (470)
T ss_dssp EEESSTTS
T ss_pred eEEECCCC
Confidence 77776543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.43 E-value=0.0061 Score=50.46 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=41.8
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-------ccceeeEEEccCCCEEEEEe
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-------LHFANGVELSADESFVIVAE 265 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyva~ 265 (337)
..+.+++|||+ |+++..... ....+.|+.++..+++.+.+... .......+++|||+.|+++.
T Consensus 43 ~~~p~~SPDG~~iaf~~~~~~---------~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 43 INNARFFPDGRKIAIRVMRGS---------SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEEEECTTSSEEEEEEEEST---------TCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred ccCEEECCCCCEEEEEEeeCC---------CCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 35678999997 665532211 01123688888888877655321 22456788999999998876
Q ss_pred CC
Q psy4771 266 TM 267 (337)
Q Consensus 266 ~~ 267 (337)
..
T Consensus 114 ~~ 115 (281)
T d1k32a2 114 AM 115 (281)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.43 E-value=0.19 Score=43.66 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=42.0
Q ss_pred cceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee----cCCCCCCCceeEC--CCCC-EEEEecCC
Q psy4771 247 HFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI----DGLPGLPDNVKRD--SKGN-FLVSLVCP 313 (337)
Q Consensus 247 ~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~----~~~~g~Pdgi~~d--~dG~-l~va~~~~ 313 (337)
..+.|++++++.++||++|.. ..||+|+.+.........+. .++.+-|.||++= .+|. +|+++..+
T Consensus 180 ~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG 252 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG 252 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred CccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence 467899999998999999985 58999998643222222221 1244457888753 3333 66665444
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.04 Score=48.12 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=86.4
Q ss_pred ccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-C--c-EEEEEc
Q psy4771 65 PEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-F--G-LYKVNV 139 (337)
Q Consensus 65 P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~--g-v~~vd~ 139 (337)
..++++ .++.+.+...++.|..|+..+...+..+.... . ..........++|.|+|+++++-.. . + |...|.
T Consensus 187 ~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~--~-l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~ 263 (393)
T d1sq9a_ 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH--S-MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 263 (393)
T ss_dssp CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccc--c-cccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence 346677 56777789999999999874333222221000 0 0112234678999999977776432 2 2 556688
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
++++.......... .... . ....+ --...+++++.+||++.+|-..
T Consensus 264 ~~g~~~~~l~~~~~-~~~~---~---------------------~~~~g-H~~~V~~l~fspd~~~l~S~s~-------- 309 (393)
T d1sq9a_ 264 EFGERIGSLSVPTH-SSQA---S---------------------LGEFA-HSSWVMSLSFNDSGETLCSAGW-------- 309 (393)
T ss_dssp TTCCEEEEECBC---------------------------------CCBS-BSSCEEEEEECSSSSEEEEEET--------
T ss_pred ccceeeeeeccccc-cccc---e---------------------eeeec-ccCceeeeccCCCCCeeEEECC--------
Confidence 77765443321000 0000 0 00000 0134688999999987665543
Q ss_pred eeeecCCccEEEEcCCCCeeEEEeccc-----cceeeEEEccCCCEE
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIANL-----HFANGVELSADESFV 261 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~~~-----~~p~gia~~~dg~~l 261 (337)
+|.|..+|.++|+......+. .....++++++++.+
T Consensus 310 ------D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 310 ------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp ------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred ------CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence 468888888888765444332 133467899988654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.2 Score=40.80 Aligned_cols=173 Identities=10% Similarity=0.144 Sum_probs=88.0
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----ccc-ceeeec---
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTE-QLISMD--- 183 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~-~v~~~~--- 183 (337)
..|..+.+.+++.++++....++..++..+++....... . ....++.++++.+ .++ .+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~ 150 (287)
T d1pgua2 81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL----N------SPGSAVSLSQNYVAVGLEEGNTIQVFKLSD 150 (287)
T ss_dssp SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC----S------SCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred cceeeeeeccCCceEEEeecccceeeeccceeeeeeccc----c------ceeeeeeccCcceeeeccccceeeeeeccc
Confidence 347788898888777776666788888776654443321 1 1122333333333 111 111111
Q ss_pred ----cccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccC
Q psy4771 184 ----TEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSAD 257 (337)
Q Consensus 184 ----~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~d 257 (337)
.......-.....++++++|...++.. .+|.|..+|..+++..... ......+.++++|+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--------------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~ 216 (287)
T d1pgua2 151 LEVSFDLKTPLRAKPSYISISPSETYIAAGD--------------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA 216 (287)
T ss_dssp EEEEEECSSCCSSCEEEEEECTTSSEEEEEE--------------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCC
T ss_pred cceeeeeeeccCCceeEEEeccCcccccccc--------------ccccccceeecccccccccccccccccceeeeccc
Confidence 011111123467889999987443332 2457888887776543211 11233466777654
Q ss_pred CC---------EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 258 ES---------FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 258 g~---------~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
+. .++++....+.|..+++.... .....+ ....+....++..+++.+..+.
T Consensus 217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-~~~~~~-~~h~~~V~~v~~~~~~~l~s~g 276 (287)
T d1pgua2 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKAL-NAHKDGVNNLLWETPSTLVSSG 276 (287)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTT-CCEEET-TSSTTCEEEEEEEETTEEEEEE
T ss_pred ccccccccCCCCeeEeecCCCeEEEEECCCCC-eEEEEe-CCCCCCeEEEEECCCCEEEEEE
Confidence 42 244555556778888875321 111211 1122334667667776554443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.30 E-value=0.2 Score=40.51 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
...++++.++|++.++-. .+|.|..+|..+++... +...-...+.+++++|++.|+.+. ..+.|
T Consensus 249 ~v~~~~~~~~~~~l~s~~--------------~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s-~Dg~i 313 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCA--------------DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS-VDQTV 313 (317)
T ss_dssp CEEEEEECSSSSCEEEEE--------------TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE-TTSEE
T ss_pred CEEEEEECCCCCEEEEEE--------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeE
Confidence 357788888887544432 24678888887776433 333344568899999998666554 34566
Q ss_pred EEE
Q psy4771 272 HRY 274 (337)
Q Consensus 272 ~~~ 274 (337)
..+
T Consensus 314 ~iW 316 (317)
T d1vyhc1 314 KVW 316 (317)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.05 Score=47.48 Aligned_cols=122 Identities=7% Similarity=0.056 Sum_probs=71.5
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
.....+++.++|.|+.+.....|..+|..+++............+ -.
T Consensus 185 ~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~---------------------------------h~ 231 (393)
T d1sq9a_ 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN---------------------------------NS 231 (393)
T ss_dssp CCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C---------------------------------CC
T ss_pred CcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccccccc---------------------------------cc
Confidence 346689999998555444333488889887764433321111111 12
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--------------cccceeeEEEccC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--------------NLHFANGVELSAD 257 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--------------~~~~p~gia~~~d 257 (337)
...+.++++|||++.++-...+ ..+.+..+|.++++...... +-..-+.++++||
T Consensus 232 ~~V~~l~~spdg~~l~sgs~D~-----------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd 300 (393)
T d1sq9a_ 232 NSIRSVKFSPQGSLLAIAHDSN-----------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300 (393)
T ss_dssp CCEEEEEECSSTTEEEEEEEET-----------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred ceEEEcccccccceeeeecCCC-----------CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC
Confidence 3468899999998666543211 11245556666654322221 1223578999999
Q ss_pred CCEEEEEeCCCCEEEEEEeeC
Q psy4771 258 ESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 258 g~~lyva~~~~~~I~~~~~~g 278 (337)
++. +++-...++|...+++.
T Consensus 301 ~~~-l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 301 GET-LCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSE-EEEEETTSEEEEEETTT
T ss_pred CCe-eEEECCCCEEEEEECCC
Confidence 974 45556678898888754
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.29 Score=41.51 Aligned_cols=72 Identities=17% Similarity=0.059 Sum_probs=41.5
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCcEEEEEcCCCe
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g~ 143 (337)
++++ .++ .|.+...+|.|..|+......+.... ........+.+.+++. ++++.....+...|..+..
T Consensus 126 ~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 196 (388)
T d1erja_ 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ---------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196 (388)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEECCCCCcceecccccccccccccccccccccc---------cccccccccccccccccccccccceeeeeeeccccc
Confidence 4555 344 45588889988888764333222221 1123456888888884 4444433447777877665
Q ss_pred EEEE
Q psy4771 144 TEQL 147 (337)
Q Consensus 144 ~~~l 147 (337)
....
T Consensus 197 ~~~~ 200 (388)
T d1erja_ 197 CSLT 200 (388)
T ss_dssp EEEE
T ss_pred cccc
Confidence 4443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.24 Score=41.58 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=80.0
Q ss_pred CCeEE-EEecCcEEEEEeCC--c-eeEEEecCccccCccccCccCCcceEEECCCCcEEE-EECC--CcEEEEEcCCCeE
Q psy4771 72 KGDLY-MGVDGGHILKLSGG--K-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHV-ADAY--FGLYKVNVTTGQT 144 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyV-ad~~--~gv~~vd~~~g~~ 144 (337)
++.+. ++..+|.|..|+.. + ...+......+ . ....+.-..++++++|+.++ +... ..+..++.++++.
T Consensus 76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~---~-~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (325)
T d1pgua1 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE---F-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS 151 (325)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE---E-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred CCCEEEEEeCCCCEEEeeecCCcceeeeecccccc---c-ccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence 45544 78889988877641 1 11110000000 0 01223356899999995544 3322 2266666665543
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeee
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~ 223 (337)
..... + .-...+.+++.+++. +.++-.
T Consensus 152 ~~~~~------~---------------------------------h~~~v~~~~~~~~~~~~~~~~~------------- 179 (325)
T d1pgua1 152 LGEVS------G---------------------------------HSQRINACHLKQSRPMRSMTVG------------- 179 (325)
T ss_dssp EEECC------S---------------------------------CSSCEEEEEECSSSSCEEEEEE-------------
T ss_pred ceeee------e---------------------------------cccccccccccccccceEEEee-------------
Confidence 22211 1 112357788888765 333322
Q ss_pred cCCccEEEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.+|.+..+|....+....... ......++++||+..++++-...+.|..+++.
T Consensus 180 -~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~ 236 (325)
T d1pgua1 180 -DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236 (325)
T ss_dssp -TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred -cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence 234666676655544332222 23457899999865677766667889988864
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.71 E-value=0.083 Score=47.20 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=22.8
Q ss_pred CCcceEEECCCCc-EEEE-EC-------CCc-EEEEEcCCCeEEEE
Q psy4771 112 GRPLGIKFDKNGA-LHVA-DA-------YFG-LYKVNVTTGQTEQL 147 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVa-d~-------~~g-v~~vd~~~g~~~~l 147 (337)
....++.+.|||+ |.++ +. ..+ ++.+|.++++...+
T Consensus 62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l 107 (470)
T d2bgra1 62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE 107 (470)
T ss_dssp SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS
T ss_pred CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc
Confidence 3457899999994 4333 31 112 67788888876544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.38 Score=40.28 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=37.5
Q ss_pred EEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECC-CcEEEEEcCCCeEEE
Q psy4771 75 LYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAY-FGLYKVNVTTGQTEQ 146 (337)
Q Consensus 75 ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~-~gv~~vd~~~g~~~~ 146 (337)
+.+...++.|..|+....+........ ........++++.|+ +.++++-.. ..|..+|.++++...
T Consensus 175 ~~~~~~d~~v~~~d~~~~~~~~~~~~~------~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~ 242 (325)
T d1pgua1 175 SMTVGDDGSVVFYQGPPFKFSASDRTH------HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242 (325)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSS------SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEEeecccccccccccccccceecccc------cCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence 336667887877775332222111110 122234678999987 577665444 448888887776543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.30 E-value=0.59 Score=38.24 Aligned_cols=139 Identities=11% Similarity=0.124 Sum_probs=81.1
Q ss_pred ceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 115 LGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
......+.+.++++....+ |..+|..+++...... + .-..
T Consensus 188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~------~---------------------------------h~~~ 228 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT------G---------------------------------HESD 228 (340)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC------C---------------------------------CSSC
T ss_pred eeeccccccceeEEeecCceEEEEECCCCcEEEEEe------C---------------------------------CCCC
Confidence 3556666666666644444 6677877665443321 1 1123
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc---ccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN---LHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
.+.++++++|.++++-.. +|.+..+|....+....... ......++++++++.|+++. ..+.
T Consensus 229 i~~v~~~p~~~~l~s~s~--------------d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~ 293 (340)
T d1tbga_ 229 INAICFFPNGNAFATGSD--------------DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFN 293 (340)
T ss_dssp EEEEEECTTSSEEEEEET--------------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE-TTSC
T ss_pred eEEEEECCCCCEEEEEeC--------------CCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE-CCCE
Confidence 578899999886554332 35677777665554333222 23357899999998666554 4578
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
|..+++...+ ....+. +..+....+++.++|.+.++.
T Consensus 294 i~iwd~~~~~--~~~~~~-~H~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 294 CNVWDALKAD--RAGVLA-GHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSCEEEE
T ss_pred EEEEECCCCc--EEEEEc-CCCCCEEEEEEeCCCCEEEEE
Confidence 8888875321 122222 122335678899998755543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.23 Score=40.16 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=43.2
Q ss_pred cEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 196 SVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 196 ~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
..+++|||+ |.|+.... ....++.++..++..+.+...........++|||+.++......+
T Consensus 43 sP~wSPDGk~IAf~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~ 105 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFES------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG 105 (269)
T ss_dssp EEEECTTSSEEEEEECTT------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred eeEECCCCCEEEEEEeec------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC
Confidence 457899996 65554332 123677888877777777766677788899999998876655443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.62 Score=37.36 Aligned_cols=171 Identities=14% Similarity=0.141 Sum_probs=83.9
Q ss_pred eEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeec-cc
Q psy4771 116 GIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMD-TE 185 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~-~~ 185 (337)
.-++.||| .|.++.... .++.++..++....+... .+. ......+++|+.+ ..+...... ..
T Consensus 43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~spdg~~i~~~~~~~~~~~~~~~~~ 114 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF----PRH----NGAPAFSPDGSKLAFALSKTGSLNLYVMDL 114 (269)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC----SSC----EEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee----ecc----cccceecCCCCeeeEeeecCCccceeeccc
Confidence 45899999 665554333 388888888877776642 111 2345567777766 111111110 00
Q ss_pred cCCC------CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCC
Q psy4771 186 IDGA------KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADE 258 (337)
Q Consensus 186 ~~~~------~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg 258 (337)
.... ............++. ++++... ...-.++.++.+++....+...........+++|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg 182 (269)
T d2hqsa1 115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG 182 (269)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECT------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS
T ss_pred ccccceeeeeccccccccccccccccceecccc------------cCCceEeeeecccccceeeeccccccccccccccc
Confidence 0000 000011112222222 2222211 11236788887777665555444445567899999
Q ss_pred CEEEEEeCCCC--EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC--EEEEec
Q psy4771 259 SFVIVAETMSS--RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN--FLVSLV 311 (337)
Q Consensus 259 ~~lyva~~~~~--~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~--l~va~~ 311 (337)
+.++......+ .|+.++..+ +..+.... .+.-...++.+||+ +|++..
T Consensus 183 ~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~--~~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 183 KFMVMVSSNGGQQHIAKQDLAT---GGVQVLSS--TFLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp SEEEEEEECSSCEEEEEEETTT---CCEEECCC--SSSCEEEEECTTSSEEEEEEEE
T ss_pred ceeEEEeecCCceeeeEeeccc---ccceEeec--CccccceEECCCCCEEEEEEcC
Confidence 98877655443 344444322 22333222 22234557888887 355443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.48 Score=42.48 Aligned_cols=67 Identities=7% Similarity=-0.108 Sum_probs=41.6
Q ss_pred eEEEccCCCEEEEEeCC----CCEEEEEEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEecCCCCCch
Q psy4771 251 GVELSADESFVIVAETM----SSRVHRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLVCPVEQPS 318 (337)
Q Consensus 251 gia~~~dg~~lyva~~~----~~~I~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~~~~~~p~ 318 (337)
-++++.+++.||++.+. ...|++++++|........ .+ ...+.--.+.++++|+++|-...+..-|.
T Consensus 364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt-~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~ 435 (465)
T d1xfda1 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS-CDLVENCTYFSASFSHSMDFFLLKCEGPGVPM 435 (465)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS-TTSSSSCCCCEEEECTTSSEEEEECCSSSSCC
T ss_pred EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeec-cccCCCCCEEEEEECCCCCEEEEEeecCCCCe
Confidence 35789999999987653 3358888887653222111 00 01111247789999999887776644454
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.91 Score=36.79 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=30.4
Q ss_pred CccEEEEcCCCCeeEE-Eec-----cccceeeEEEccCCCEEEEEeCC---CCEEEEEEee
Q psy4771 226 SGRLIQYNPKTKKNKV-LIA-----NLHFANGVELSADESFVIVAETM---SSRVHRYYLK 277 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~-~~~-----~~~~p~gia~~~dg~~lyva~~~---~~~I~~~~~~ 277 (337)
+|.|..+|..+++... +.. ....-+.+++++++..|.++... ..+|+.++.+
T Consensus 279 Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 5688888888776532 221 11235789999998544443322 2357777654
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=94.46 E-value=0.33 Score=38.12 Aligned_cols=102 Identities=8% Similarity=-0.006 Sum_probs=58.4
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-------EE-eccccceeeEEEccCCCEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-------VL-IANLHFANGVELSADESFVI 262 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-------~~-~~~~~~p~gia~~~dg~~ly 262 (337)
-+...-+-+||+|.||....+ .||+=.|-+.+.. .+ ..+-..-.-+-++|+| .||
T Consensus 86 Wn~FkflffdP~G~LyaVt~~----------------~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G-~LY 148 (235)
T d1tl2a_ 86 WNQFQFLFFDPNGYLYAVSKD----------------KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLY 148 (235)
T ss_dssp GGGCSEEEECTTSCEEEEETT----------------EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEE
T ss_pred ccceEEEEECCCceEEEecCc----------------ceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCc-eEE
Confidence 344566889999999966543 5666555444321 11 1122334468899999 599
Q ss_pred EEeCCCCEEEEEEe-eCCC---CCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 263 VAETMSSRVHRYYL-KGPK---QGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 263 va~~~~~~I~~~~~-~g~~---~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
..+.. ++++-.. .+.. +...+.+-...-..+..|.+.++|+||-...
T Consensus 149 aV~~~--~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~~ 199 (235)
T d1tl2a_ 149 AVHGQ--QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQG 199 (235)
T ss_dssp EEETT--EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEET
T ss_pred EEECC--cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEeC
Confidence 88643 5555443 2211 1112333321212356889999999988864
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=94.17 E-value=0.4 Score=37.63 Aligned_cols=160 Identities=17% Similarity=0.125 Sum_probs=86.5
Q ss_pred hccccccCceeccCcccCccEEEe-eCCeEEEEecCcEEEEEeCCc-----e-eEEEecCccccCccccCccCCcceEEE
Q psy4771 47 LNEKLNNAEKLFENEIHGPEAVVK-HKGDLYMGVDGGHILKLSGGK-----L-VPVVKLGKDCYGFKYEQQCGRPLGIKF 119 (337)
Q Consensus 47 ~~~~l~~~~~~~~g~~~~P~~i~~-~~g~ly~d~~~g~I~~~~~~~-----~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~ 119 (337)
.++.+..+.++..+.+..=.-|++ .+|.||+-.. +++++=...+ + ..-.++| |.++ +.=.-+.|
T Consensus 24 ~dn~~~rA~~lGk~g~~n~~~i~fsP~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG--~ggW------n~Fkflff 94 (235)
T d1tl2a_ 24 NDNWLARATLIGKGGWSNFKFLFLSPGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIG--NGGW------NQFQFLFF 94 (235)
T ss_dssp TCCHHHHSEEEESSSCTTCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEE--CSCG------GGCSEEEE
T ss_pred cccccchhhhcCcccccceeEEEECCCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcc--cCcc------cceEEEEE
Confidence 345666777787766665566777 7889995443 4688754311 1 0011222 1111 22335999
Q ss_pred CCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEE
Q psy4771 120 DKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTV 199 (337)
Q Consensus 120 d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~v 199 (337)
||+|-||++.. ..+++=.+-+.+-......... -|. -.-+...-|-+
T Consensus 95 dP~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~-vG~-------------------------------~gw~df~~lFF 141 (235)
T d1tl2a_ 95 DPNGYLYAVSK-DKLYKASPPQSDTDNWIARATE-VGS-------------------------------GGWSGFKFLFF 141 (235)
T ss_dssp CTTSCEEEEET-TEEEEESCCCSTTCCHHHHSEE-EEC-------------------------------SSGGGEEEEEE
T ss_pred CCCceEEEecC-cceecCCcCcccchhhhhhhhh-hcc-------------------------------CCcCceeEEEE
Confidence 99999998873 3577765433221111110000 010 01222345678
Q ss_pred cCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-------eEEEe-ccccceeeEEEccCCCEEEEEe
Q psy4771 200 DSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-------NKVLI-ANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 200 d~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-------~~~~~-~~~~~p~gia~~~dg~~lyva~ 265 (337)
||+|.||..... ++++-.|..+. .+.+- ++-..+..|.++|||. |+...
T Consensus 142 dP~G~LYaV~~~----------------~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~ 198 (235)
T d1tl2a_ 142 HPNGYLYAVHGQ----------------QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ 198 (235)
T ss_dssp CTTSCEEEEETT----------------EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE
T ss_pred CCCceEEEEECC----------------cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEe
Confidence 999999976543 34444433321 12233 3455778999999995 66654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.81 E-value=1.5 Score=40.14 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=45.6
Q ss_pred eeCCeEEEEec-CcEEEEEeC-CceeEEEecCccccCccc-cCcc-CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 70 KHKGDLYMGVD-GGHILKLSG-GKLVPVVKLGKDCYGFKY-EQQC-GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 70 ~~~g~ly~d~~-~g~I~~~~~-~~~~~~~~~g~~~~~~~~-~~~~-~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
+.+|.+|+... .++++.++. .+.+.+-++......... ...+ ....|+++. +++||+.+....++.+|.++|++.
T Consensus 60 v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~~~~g~l~alda~tG~~~ 138 (571)
T d2ad6a1 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee-CCeEEEEeCCCcEEeeehhhhhhh
Confidence 36899996654 688999985 223333222110000000 0011 123577775 569999986566999999999875
Q ss_pred EEe
Q psy4771 146 QLI 148 (337)
Q Consensus 146 ~l~ 148 (337)
.-.
T Consensus 139 w~~ 141 (571)
T d2ad6a1 139 WEV 141 (571)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.71 E-value=1.3 Score=35.44 Aligned_cols=120 Identities=9% Similarity=0.044 Sum_probs=61.9
Q ss_pred CCcceEEECCCCc-EEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+....++++++|. |++++....|..+|..+++..... ..+ .
T Consensus 163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-----~~~---------------------------------h 204 (287)
T d1pgua2 163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-----WAF---------------------------------R 204 (287)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-----SCC---------------------------------C
T ss_pred CceeEEEeccCccccccccccccccceeeccccccccc-----ccc---------------------------------c
Confidence 4467889999985 445554445777887766543211 111 0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC-CeeEEEe-ccccceeeEEEccCCCEEEEEeCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT-KKNKVLI-ANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~-~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
-...+.+++.+++.......... -+.+....+|.|+.+|..+ ++..... ......+++++++++ .|+.+ ...
T Consensus 205 ~~~v~~~~~~p~~~~~~~~~~~~----~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~-g~D 278 (287)
T d1pgua2 205 TSKINAISWKPAEKGANEEEIEE----DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSS-GAD 278 (287)
T ss_dssp SSCEEEEEECCCC------CCSC----CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEE-ETT
T ss_pred ccccceeeecccccccccccCCC----CeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEE-ECC
Confidence 12346677776654332222111 0112244567788888654 3322222 234456889999887 44443 345
Q ss_pred CEEEEEE
Q psy4771 269 SRVHRYY 275 (337)
Q Consensus 269 ~~I~~~~ 275 (337)
+.|..++
T Consensus 279 ~~v~iW~ 285 (287)
T d1pgua2 279 ACIKRWN 285 (287)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 6666554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.10 E-value=1.2 Score=40.97 Aligned_cols=78 Identities=10% Similarity=-0.068 Sum_probs=47.5
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccC--ccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYG--FKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.+|.+|+...+++|+.+|..+.+.+-++.-.... ...........|+++. ++++|++.....++.+|.++|+...-
T Consensus 75 v~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CCcEEEEecccceeeeccccccceec
Confidence 35899998888999999998544433333111000 0000011123466664 45899997666799999999987643
Q ss_pred e
Q psy4771 148 I 148 (337)
Q Consensus 148 ~ 148 (337)
.
T Consensus 154 ~ 154 (573)
T d1kb0a2 154 Q 154 (573)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.08 E-value=1.4 Score=37.88 Aligned_cols=84 Identities=13% Similarity=0.244 Sum_probs=49.8
Q ss_pred cEEEEcCCCCeeEEEe-------ccccceeeEEE--ccC-CCEEEEEeCCCCEEEEEEeeCCCCCc-----eeeeecCCC
Q psy4771 228 RLIQYNPKTKKNKVLI-------ANLHFANGVEL--SAD-ESFVIVAETMSSRVHRYYLKGPKQGK-----SEVFIDGLP 292 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~-------~~~~~p~gia~--~~d-g~~lyva~~~~~~I~~~~~~g~~~~~-----~~~~~~~~~ 292 (337)
.+|.+|+..+.+..+. ..+..+.|+|+ +++ |....+.....+++..|.+.....+. .+.| .++
T Consensus 102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~ 179 (353)
T d1h6la_ 102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMN 179 (353)
T ss_dssp EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECS
T ss_pred EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCC
Confidence 4677776655443322 23445889999 554 44323334445788888775322221 2222 255
Q ss_pred CCCCceeECCC-CCEEEEecCC
Q psy4771 293 GLPDNVKRDSK-GNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~d-G~l~va~~~~ 313 (337)
..+.|+++|.+ ++||++.-..
T Consensus 180 ~q~EGCVvDde~~~LyisEE~~ 201 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEEDE 201 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETTT
T ss_pred CccceEEEeCCCCcEEEecCcc
Confidence 67899999987 5799997443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.34 Score=43.54 Aligned_cols=115 Identities=11% Similarity=0.016 Sum_probs=67.1
Q ss_pred ECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEE
Q psy4771 119 FDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVT 198 (337)
Q Consensus 119 ~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~ 198 (337)
+.+++.++..+....++.+|.++++.+.+..... . ....+.+..
T Consensus 24 W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~-~-----------------------------------~~~~~~~~~ 67 (465)
T d1xfda1 24 WISDTEFIYREQKGTVRLWNVETNTSTVLIEGKK-I-----------------------------------ESLRAIRYE 67 (465)
T ss_dssp BSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTT-T-----------------------------------TTTTCSEEE
T ss_pred EeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCcc-c-----------------------------------cccccceeE
Confidence 4455555555544558888888777766654210 0 111345677
Q ss_pred EcCCCc-EEE-EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce---eeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 199 VDSDGM-VYW-SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA---NGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 199 vd~~G~-lyv-td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
+++||+ |++ ++....|+ +...|.++.+|..+++...+...-... .-..+||||+.|.+.- .+.|+.
T Consensus 68 ~SpD~~~vl~~~~~~~~~r-------~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~ 138 (465)
T d1xfda1 68 ISPDREYALFSYNVEPIYQ-------HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYY 138 (465)
T ss_dssp ECTTSSEEEEEESCCCCSS-------SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEE
T ss_pred ECCCCCeEEEEEcccceeE-------eeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEE
Confidence 899997 444 44433221 234578899999888776553221111 2367889998775544 456766
Q ss_pred EEeeC
Q psy4771 274 YYLKG 278 (337)
Q Consensus 274 ~~~~g 278 (337)
.+..+
T Consensus 139 ~~~~~ 143 (465)
T d1xfda1 139 CAHVG 143 (465)
T ss_dssp ESSSS
T ss_pred EecCC
Confidence 66543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.62 E-value=3.7 Score=37.50 Aligned_cols=76 Identities=9% Similarity=0.014 Sum_probs=46.7
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCc-cCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQ-CGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.+|.||+...+++|+.+|..+.+.+-++-..... ..... .....|+++. ++++|+.+....++.+|.++|+...-
T Consensus 66 v~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~-~~~~~~~~~~rg~a~~-~~~i~~~t~~~~l~alda~tG~~~W~ 142 (582)
T d1flga_ 66 VSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPD-DIRPCCDVVNRGAAIY-GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp EETTEEEEEETTTEEEEEESSSCCEEEEEECCCCT-TCCCSSCSCCCCCEEE-TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred EECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCC-ccccccccccCCceEe-CCceEEecCCCeEEEecccccceeee
Confidence 46899998888999999998443333222100000 00011 1123467764 45899998767799999999976543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.56 E-value=2 Score=39.22 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=46.0
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccc-cCccccCcc-CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDC-YGFKYEQQC-GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.+|.||+...+++|+.+|..+.+.+-++.... ........+ ....+++.. ++++|+.+....|+.+|.++|+...-
T Consensus 64 v~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~l~Alda~tG~~~w~ 142 (560)
T d1kv9a2 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLDGRLIALDAKTGKAIWS 142 (560)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee-CCeEEEEeCCCEEEEEECCCCcEEec
Confidence 469999988889999999984443333321000 000000111 112355553 34788887656699999988876654
Q ss_pred e
Q psy4771 148 I 148 (337)
Q Consensus 148 ~ 148 (337)
.
T Consensus 143 ~ 143 (560)
T d1kv9a2 143 Q 143 (560)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=2.9 Score=33.34 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEe
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~ 265 (337)
..++++++|+|++++|-.. +|.|..+|.++++............-++++++++.+.++-
T Consensus 253 ~v~~l~~sp~~~~lasg~~--------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~ 311 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGS--------------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311 (342)
T ss_dssp CEEEEEECTTTCCEEEEET--------------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred cceeEEecCCccEEEEECC--------------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence 4578999999886555432 5688999988876533333333445688999998777664
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.72 E-value=3.4 Score=33.26 Aligned_cols=140 Identities=8% Similarity=0.139 Sum_probs=76.0
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEecc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~ 150 (337)
+..+.+...++.|..++..+...+.... ........+.+++++..+++.... .|...|.+++.......
T Consensus 171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~- 240 (355)
T d1nexb2 171 GNIVVSGSYDNTLIVWDVAQMKCLYILS---------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ- 240 (355)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEEC---------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred cceeeeecccceeeeeecccccceeeee---------ccccccccccccccceeeecccccceEEeeeccccccccccc-
Confidence 4555677888888888764333332221 122345678888888655554444 47778877665443332
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~ 230 (337)
+. -...+.+++++ +..++-. .+|.|.
T Consensus 241 -----~h---------------------------------~~~v~~~~~~~--~~l~~~~--------------~dg~i~ 266 (355)
T d1nexb2 241 -----GH---------------------------------TALVGLLRLSD--KFLVSAA--------------ADGSIR 266 (355)
T ss_dssp -----CC---------------------------------SSCCCEEEECS--SEEEEEC--------------TTSEEE
T ss_pred -----cc---------------------------------ccccccccccc--ceeeeee--------------cccccc
Confidence 10 11235566543 3333322 245777
Q ss_pred EEcCCCCeeEEEeccccceeeE-EEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 231 QYNPKTKKNKVLIANLHFANGV-ELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 231 ~~d~~~~~~~~~~~~~~~p~gi-a~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+|..+++..... .......+ +++++++.|..+. .+.|..+++..
T Consensus 267 iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~--d~~i~vwd~~t 312 (355)
T d1nexb2 267 GWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS--ENQFNIYNLRS 312 (355)
T ss_dssp EEETTTCCEEEEE-ECTTCCCCCEEEECSSEEEEEE--TTEEEEEETTT
T ss_pred cccccccceeccc-ccCCceEEEEEcCCCCEEEEEe--CCEEEEEECCC
Confidence 7787665433222 22223333 5567776444433 57899998764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=90.50 E-value=6.3 Score=36.02 Aligned_cols=78 Identities=12% Similarity=0.022 Sum_probs=42.2
Q ss_pred eCCeEEEE-ecCcEEEEEeC-CceeEEEecCccccCcc-ccCccCC-cceEEECCC----C-cEEEEECCCcEEEEEcCC
Q psy4771 71 HKGDLYMG-VDGGHILKLSG-GKLVPVVKLGKDCYGFK-YEQQCGR-PLGIKFDKN----G-ALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 71 ~~g~ly~d-~~~g~I~~~~~-~~~~~~~~~g~~~~~~~-~~~~~~~-P~Gl~~d~~----G-~lyVad~~~gv~~vd~~~ 141 (337)
.+|.||+. ...++++.++. .+.+.+-++.-...... ....+.. -.|+++-++ + ++|+++....|+.+|.++
T Consensus 61 ~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t 140 (596)
T d1w6sa_ 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (596)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence 58899954 44678888874 22333322211100000 0011111 146666332 1 488887556699999999
Q ss_pred CeEEEEe
Q psy4771 142 GQTEQLI 148 (337)
Q Consensus 142 g~~~~l~ 148 (337)
|+...-.
T Consensus 141 G~~~w~~ 147 (596)
T d1w6sa_ 141 GETVWKV 147 (596)
T ss_dssp CCEEEEE
T ss_pred Cceeccc
Confidence 9876554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.84 E-value=8.4 Score=33.23 Aligned_cols=101 Identities=10% Similarity=0.002 Sum_probs=55.9
Q ss_pred ccEEEcCCCc-EEEE-cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc--eeeEEEccCCCEEEEEeCC---
Q psy4771 195 NSVTVDSDGM-VYWS-DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF--ANGVELSADESFVIVAETM--- 267 (337)
Q Consensus 195 n~v~vd~~G~-lyvt-d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~--p~gia~~~dg~~lyva~~~--- 267 (337)
.+..+++||+ +.++ |.+. ...-.|+.+|.++|+... ..+.. ..++++++|++.+|.+...
T Consensus 128 ~~~~~Spd~~~la~s~d~~G-----------~e~~~l~v~Dl~tg~~~~--~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~ 194 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASG-----------SDWVTIKFMKVDGAKELP--DVLERVKFSCMAWTHDGKGMFYNAYPQQD 194 (430)
T ss_dssp EEEEECTTSSEEEEEEEETT-----------CSCEEEEEEETTTTEEEE--EEEEEECSCCEEECTTSSEEEEEECCCCS
T ss_pred cceEecCCCCEEEEEecccc-----------CchheeEEeccCcceecc--cccccccccceEEcCCCCEEEEEEecccc
Confidence 4567888886 3322 2221 112378889999987532 22222 3679999999988765422
Q ss_pred ------------CCEEEEEEeeCCCCCceeeeecCC-CCCCCceeECCCCCEEE
Q psy4771 268 ------------SSRVHRYYLKGPKQGKSEVFIDGL-PGLPDNVKRDSKGNFLV 308 (337)
Q Consensus 268 ------------~~~I~~~~~~g~~~~~~~~~~~~~-~g~Pdgi~~d~dG~l~v 308 (337)
..+|++..+.........++-+.. +.+--++.+..+|++.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~ 248 (430)
T d1qfma1 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL 248 (430)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred CcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceee
Confidence 246777776433222233433211 22233566788887544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.26 E-value=9.1 Score=30.20 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=40.9
Q ss_pred CccEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CC---CCCCCcee
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GL---PGLPDNVK 299 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~---~g~Pdgi~ 299 (337)
+|.|..+|....+......... ...-.+++.+++.++ +-...+.|..+++..++. ...+.. .. .+....++
T Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~Dg~i~iwd~~tg~~--i~~~~~~~~~~~~~~v~~v~ 312 (342)
T d2ovrb2 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIR 312 (342)
T ss_dssp TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEE-EEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEE
T ss_pred CCEEEEEecccccccccccccceeeeceeecccCCCeeE-EEcCCCEEEEEECCCCCE--EEEEecccCCCCCCCEEEEE
Confidence 4677778876665444333221 122234455665454 444568899988753321 112211 11 11234577
Q ss_pred ECCCCCEEEE
Q psy4771 300 RDSKGNFLVS 309 (337)
Q Consensus 300 ~d~dG~l~va 309 (337)
++++|.+.++
T Consensus 313 ~s~~~~~la~ 322 (342)
T d2ovrb2 313 ASNTKLVCAV 322 (342)
T ss_dssp ECSSEEEEEE
T ss_pred ECCCCCEEEE
Confidence 7777754433
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.85 E-value=9.7 Score=30.22 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=45.5
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEE
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQ 146 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~ 146 (337)
++.++++.|.++..+|.|..|+..+.+.+..+. ...+...++++.+++.|+.+.....|...+....+...
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~---------~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~ 88 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS---------GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 88 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEE---------CCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE---------CCCCCEEEEEEcCCCEEEEEeccccccccccccccccc
Confidence 344567778899999999999874434343331 11234678999887666655544447777776655443
Q ss_pred E
Q psy4771 147 L 147 (337)
Q Consensus 147 l 147 (337)
.
T Consensus 89 ~ 89 (355)
T d1nexb2 89 V 89 (355)
T ss_dssp E
T ss_pred c
Confidence 3
|