Psyllid ID: psy4818
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 734 | 2.2.26 [Sep-21-2011] | |||||||
| Q9QUR6 | 710 | Prolyl endopeptidase OS=M | yes | N/A | 0.950 | 0.983 | 0.471 | 0.0 | |
| P48147 | 710 | Prolyl endopeptidase OS=H | yes | N/A | 0.953 | 0.985 | 0.470 | 0.0 | |
| O70196 | 710 | Prolyl endopeptidase OS=R | yes | N/A | 0.950 | 0.983 | 0.473 | 0.0 | |
| P23687 | 710 | Prolyl endopeptidase OS=S | yes | N/A | 0.953 | 0.985 | 0.463 | 0.0 | |
| Q9XTA2 | 710 | Prolyl endopeptidase OS=B | yes | N/A | 0.950 | 0.983 | 0.460 | 0.0 | |
| Q06903 | 690 | Prolyl endopeptidase OS=A | no | N/A | 0.915 | 0.973 | 0.396 | 1e-136 | |
| P27028 | 705 | Prolyl endopeptidase OS=F | N/A | N/A | 0.911 | 0.948 | 0.369 | 1e-126 | |
| P27195 | 705 | Prolyl endopeptidase OS=E | N/A | N/A | 0.911 | 0.948 | 0.373 | 1e-125 | |
| Q86AS5 | 760 | Prolyl endopeptidase OS=D | yes | N/A | 0.942 | 0.910 | 0.325 | 1e-108 | |
| P24555 | 686 | Protease 2 OS=Escherichia | N/A | N/A | 0.866 | 0.927 | 0.259 | 7e-50 |
| >sp|Q9QUR6|PPCE_MOUSE Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/712 (47%), Positives = 470/712 (66%), Gaps = 14/712 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET +YHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETSVQEYHGHKICDPYSWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+ YHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL P+G I+G +I + ++ + N G
Sbjct: 246 YVLLSI---WEGCDPVNRLWYCDLQQEPNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +N+P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++++
Sbjct: 302 FKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNIL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L +FPLD+G + SGR+K +E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498
+P +FRE V + +QT Q+++ SKDGT++PM+I+H+ G + +P +YGYGG+
Sbjct: 417 LEPMVFREVTVKGIDAADYQTIQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+KFTI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G + K HF LL YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDTKQHFEWLLKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L +++
Sbjct: 657 QYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIEW 708
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 6 |
| >sp|P48147|PPCE_HUMAN Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/714 (47%), Positives = 469/714 (65%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESSG-IAGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT + +P +V+ I+ +P E WK L+PE E L+ +A V +N L++ Y+ +V++++
Sbjct: 302 FKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHDVKNIL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L +FPLD+G I SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +YGYGG+
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH GI A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLVKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNVDWIP 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|O70196|PPCE_RAT Prolyl endopeptidase OS=Rattus norvegicus GN=Prep PE=1 SV=1 | Back alignment and function description |
|---|
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/712 (47%), Positives = 471/712 (66%), Gaps = 14/712 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+ YHVLGT+Q +D+ EFP+ +E++D GR
Sbjct: 186 FYNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ I N G
Sbjct: 246 YVLLSI---WEGCDPVNRLWYCDLQQGSNG-INGILKWVKLIDNFEGEYDYITNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +N+P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y++NV++++
Sbjct: 302 FKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLRNVKNIL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L +FPLD+G + SGR+K +E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT-----REE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498
+P +FRE V + + +QT QV++ SKDGT++PM+I+H+ G + +P +YGYGG+
Sbjct: 417 LEPRVFREVTVKGIDASDYQTIQVFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT K +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+KFTI +
Sbjct: 537 LIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF LL YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLLKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L +++
Sbjct: 657 QYIVGRSRKQSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLNIEW 708
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has high activity on the succinyl- (suc-) peptide-4-methylcoumaryl-7-amide (MCA) substrates suc-Gly-Pro-Leu-Gly-Pro-MCA, suc-Gly-Pro-MCA and suc-Ala-Ala-Ala-MCA. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P23687|PPCE_PIG Prolyl endopeptidase OS=Sus scrofa GN=PREP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/714 (46%), Positives = 468/714 (65%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +YGYGG+
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q9XTA2|PPCE_BOVIN Prolyl endopeptidase OS=Bos taurus GN=PREP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/712 (46%), Positives = 465/712 (65%), Gaps = 14/712 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G V LDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCNFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVCLDPNTLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++ AY LS SGSDW T+ VD K+ +VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYVAYGLSASGSDWVTIKFMKVDGAKELADVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+ YHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DLH P+G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLHQEPNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHD+ TG L +FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +YGYGG+
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+ R +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G +NK HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDNKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSPKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + +
Sbjct: 657 QHLVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q06903|PPCE_AERHY Prolyl endopeptidase OS=Aeromonas hydrophila PE=1 SV=2 | Back alignment and function description |
|---|
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 286/722 (39%), Positives = 413/722 (57%), Gaps = 50/722 (6%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R+ E + D Y G + DPYRWLE ET+ + QN ++ Y R+AIK
Sbjct: 9 YPVTRQSEQL-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNRVTQDYLAQIPFRDAIKG 67
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGS-TEVFLDPNKLSKDGT 141
+L NY K AP R+ +++F N GLQN ++L Q L G EVFLDPN LS DGT
Sbjct: 68 KLATSWNYAKEGAPFREGRYHYFFKNDGLQNQNVLCGQ--LAGKPAEVFLDPNLLSPDGT 125
Query: 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG 201
TAL +FS +GK AY LS +GSDW +H+ DV++ + L++VKF ISW ++G
Sbjct: 126 TALDQLSFSRDGKTLAYSLSLAGSDWREIHLMDVESKQPLETPLRDVKFSGISWL-GNEG 184
Query: 202 FFYNQYCDINGTADGTETTAHMGQ-KIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTD 259
FFY+ Y DG+E +A Q K+Y+H LGT Q++D V P R + + VT+
Sbjct: 185 FFYSSY----DKPDGSELSARTDQHKLYFHRLGTAQEEDRLVFGAIPAQRHRYVGATVTE 240
Query: 260 CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIV 319
RYLL+S +++T G+ L+ DL +G PL TV + ++ N G L +
Sbjct: 241 DDRYLLISAADSTSGNRLYVKDLTR--EGA-----PLLTVQGDLAADVSLVDNKGSRLYL 293
Query: 320 KTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379
T ++AP ++VT+ +NP + W+ LIPE R + L Y+ + + ++
Sbjct: 294 LTNRDAPNRRLVTVEADNPGPEQWRDLIPE---RQQVLTVHSGGGYLFAEYMVDATARVE 350
Query: 380 LHDLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
D + GKR+ L LG ++ +G++ +++GF ++ QP T+Y
Sbjct: 351 QFD-HDGKRVREVGLPGLGSVSGFNGKQDDPALYFGFENYAQPPTLYK------------ 397
Query: 439 FKP-----TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY 493
F+P +++R + P F+P + ++Q ++RSKDGTRVP+ I +R G + NP I+Y
Sbjct: 398 FEPNSGAISLYRASAAP-FKPEDYVSEQRFYRSKDGTRVPLIISYRKGLKLDGSNPTILY 456
Query: 494 GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQ 553
GYGG+ VS+ P+FS+S +L G+YA+ N+RGGGE G+ WH AG + KQN FDDF
Sbjct: 457 GYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTRMNKQNVFDDFI 515
Query: 554 AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI 613
AAAEY+ + YT+ + I GGSNGGLLVGA + QRP+L A VG LDMLR++ FT
Sbjct: 516 AAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVACQAVGVLDMLRYHTFTA 575
Query: 614 AYYSESEFG-SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYK 672
++G S +++ F L YSPLH+++ YP+TLV T DHDDRV P HS+K
Sbjct: 576 GAGWAYDYGTSADSEAMFDYLKGYSPLHSVRA---GVSYPSTLVTTADHDDRVVPAHSFK 632
Query: 673 FIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPD 732
F ATLQ +P L+R+E +AGHG GTP+ K IE+ DIY F + +G + P
Sbjct: 633 FAATLQADDAG----PHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLFEMGYRQLPR 688
Query: 733 MP 734
P
Sbjct: 689 QP 690
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Aeromonas hydrophila (taxid: 644) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27028|PPCE_FLAME Prolyl endopeptidase OS=Flavobacterium meningosepticum GN=f1pep1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/712 (36%), Positives = 407/712 (57%), Gaps = 43/712 (6%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP+ +K + D Y G ++ DPYRWLE +T+ + + + Y R+ +K+
Sbjct: 28 YPETKK-VSHTDTYFGTQVSDPYRWLEDDRAEDTKAWVQQEVKFTQDYLAQIPFRDQLKK 86
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
QL+ + NYEK SAP ++ ++ N GLQ S+LY +++ G TEVFLDPNK S+ GTT
Sbjct: 87 QLMDIWNYEKISAPFKKGKYTYFSKNDGLQAQSVLY-RKDAAGKTEVFLDPNKFSEKGTT 145
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
+L +F+ G AY +S+ GSDWN + I D +T K E L +VKF ISW D GF
Sbjct: 146 SLASVSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQLDETLLDVKFSGISWLGDE-GF 204
Query: 203 FYNQYCD-INGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV---EFPNGRSLGLHSEVT 258
FY+ Y G+ T H K+Y+H LGT+Q +D ++ +FP R +G + VT
Sbjct: 205 FYSSYDKPKEGSVLSGMTDKH---KVYFHKLGTKQSQDELIIGGDKFPR-RYIGAY--VT 258
Query: 259 DCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
D RYL+VS +N T G++L+ DL + D +I G D + + +G L
Sbjct: 259 DDQRYLVVSAANATNGNELYIKDLKNKTD--------FIPIITGFDSNVNVADTDGDTLY 310
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
+ T K+AP ++V + NP + WK +I E + L++ Y+++ +
Sbjct: 311 LFTDKDAPNKRLVKTTIQNPKAETWKDVIAE-TSEPLEI--NTGGGYFFATYMKDAIDQV 367
Query: 379 DLHDLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437
+D N GK + + L G + G + +++Y FT+++ P TI+ N+ ++
Sbjct: 368 KQYDKN-GKLVRAIKLPGSGNASGFGGEKTEKDLYYSFTNYITPPTIFKYNVTTGNSE-- 424
Query: 438 DFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG 497
++++ V +F P + ++QV++ S DGT++PM I ++ G ++ +NP I+Y YGG
Sbjct: 425 -----VYQKPKV-KFNPENYVSEQVFYTSSDGTKIPMMISYKKGLKKDGKNPTILYSYGG 478
Query: 498 YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAE 557
+ +S+ P FS+ +++ + GIYA+PNIRGGGE G+ WH+AG ++K+N F+DF AA E
Sbjct: 479 FNISLQPAFSVVNAIWMEN-GGIYAVPNIRGGGEYGKKWHDAGTKMQKKNVFNDFIAAGE 537
Query: 558 YMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYS 617
Y+ YT +Y+ + G SNGGLLVGA + RP+L A VG LDMLR+NKFT
Sbjct: 538 YLQKNGYTSKEYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVLDMLRYNKFTAGAGW 597
Query: 618 ESEFGSP-NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIAT 676
++G+ ++K F L SYSP+HN+K T YP+T+V+T DHDDRV P HS+KF +
Sbjct: 598 AYDYGTAEDSKEMFEYLKSYSPVHNVKA---GTCYPSTMVITSDHDDRVVPAHSFKFGSE 654
Query: 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728
LQ K KNP+L+R+E +AGHG G + + E D+ F + +G+K
Sbjct: 655 LQAKQSC----KNPILIRIETNAGHGAGRSTEQVVAENADLLSFALYEMGIK 702
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Flavobacterium meningosepticum (taxid: 238) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27195|PPCF_ELIMR Prolyl endopeptidase OS=Elizabethkingia miricola PE=1 SV=1 | Back alignment and function description |
|---|
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/712 (37%), Positives = 399/712 (56%), Gaps = 43/712 (6%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP+ +K D Y G ++ DPYRWLE +T+ + + + Y R IK+
Sbjct: 28 YPETKKVNHT-DTYFGNQVSDPYRWLEDDRAEDTKAWVQQEVKFTQDYLAQIPFRGQIKK 86
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
QLL + NYEK SAP ++ +++ N GLQ S+LY +++ +G TEVFLDPNK S GTT
Sbjct: 87 QLLDIWNYEKISAPFKKGKYTYFYKNDGLQAQSVLY-RKDASGKTEVFLDPNKFSDKGTT 145
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
+L +F+ G AY +S+ GSDWN + I D +T K E L +VKF ISW D GF
Sbjct: 146 SLANLSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQIDETLLDVKFSGISWLGDE-GF 204
Query: 203 FYNQYCDINGTADGTETTAHMGQ-KIYYHVLGTEQDKDIPVV---EFPNGRSLGLHSEVT 258
FY+ Y + DG+ + + K+Y+H LGT+Q +D ++ +FP L VT
Sbjct: 205 FYSSY---DKPKDGSVLSGMTDKHKVYFHKLGTKQSQDELIIGGDKFPRRY---LSGYVT 258
Query: 259 DCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
+ RYL+VS +N T G++L+ DL + D +I G + + ++ +G L
Sbjct: 259 EDQRYLVVSAANATNGNELYIKDLKNKTD--------FIPIITGFESNVGLVDTDGDTLF 310
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
+ T KNAP ++V + NP + WK +I E + Y+++ S +
Sbjct: 311 LHTDKNAPNMRMVKTTIQNPKPETWKDVIAETSE---PMRVNSGGGYFFATYMKDALSQI 367
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKY-NEVFYGFTSFLQPGTIYHCNIPENITDQD 437
+D TGK + L G K E++Y FT+++ P TI+ +I D
Sbjct: 368 KQYD-KTGKLVREIKLPGSGTAGGFGGEKTEKELYYSFTNYITPPTIFKFSI-------D 419
Query: 438 DFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG 497
K ++++ V +F P + ++QV++ S DGT++PM I ++ G ++ +NP I+Y YGG
Sbjct: 420 SGKSEVYQKPKV-KFNPENYVSEQVFYTSADGTKIPMMISNKKGLKKDGKNPTILYSYGG 478
Query: 498 YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAE 557
+ +S+ P FS+ +++ + GIYA+PNIRGGGE G+ WH+AG +K+N F+DF AA E
Sbjct: 479 FNISLQPAFSVVNAIWMEN-GGIYAVPNIRGGGEYGKKWHDAGTKQQKKNVFNDFIAAGE 537
Query: 558 YMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYS 617
Y+ YT Y+ + G SNGGLLVGA + RP+L A VG LDMLR+NKFT
Sbjct: 538 YLQKNGYTSKDYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVLDMLRYNKFTAGAGW 597
Query: 618 ESEFGSP-NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIAT 676
++G+ ++K F L SYSP+HN+K T YP+T+V+T DHDDRV P HS+KF A
Sbjct: 598 AYDYGTAEDSKEMFEYLKSYSPVHNVKA---GTCYPSTMVITSDHDDRVVPAHSFKFGAE 654
Query: 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728
LQ K KNP+L+R+E +AGHG G + + E D+ F + +G+K
Sbjct: 655 LQAKQAC----KNPVLIRIETNAGHGAGRSTEQVVMENADLLSFALYEMGIK 702
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Elizabethkingia miricola (taxid: 172045) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q86AS5|PPCE_DICDI Prolyl endopeptidase OS=Dictyostelium discoideum GN=prep PE=1 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/767 (32%), Positives = 389/767 (50%), Gaps = 75/767 (9%)
Query: 23 YPKVRKDETVEDDYHG-----MKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDR 77
YP+ R+D++V D + +K+ DPYR LE ET+ + +N I+ +
Sbjct: 5 YPETRRDDSVFDIFKSTEKGSVKVYDPYRHLEDQQSPETKKWVDEENKITRSFLDQDNTS 64
Query: 78 EAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYV---------------QRN 122
E I ++++M N+E++ +R+ + F+ N N +I+Y+ +
Sbjct: 65 EKISNEIMKMLNFERFDWFRRRGSKLFFSRNPNTLNQNIIYLIDIDQISISKDGKSSAKG 124
Query: 123 LTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK--- 179
+ E FL+PN SKDGT +LK + S +G H + SK+GSDW + +K + T
Sbjct: 125 FENAIE-FLNPNTYSKDGTWSLKSFVISKSGDHVCFSYSKAGSDWEEIAVKKIITTNELK 183
Query: 180 -----------------------DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTAD- 215
D P+ + KF SI W + GF YN+Y +D
Sbjct: 184 TNKDDEEEKEDLKKKNCLHYAVVDLPDSINWCKFTSIKWDENETGFIYNRYPKPEKVSDD 243
Query: 216 --GTETTAHMGQKIYYHVLGTEQDK-DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT 272
GTET ++ K+YYH LG + D V E P +E + L +S +
Sbjct: 244 DKGTETDTNLNNKVYYHKLGDANESFDRVVFECPENPQWIFGTEFSHDHSSLFISAFRDC 303
Query: 273 QGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGP-ELIVKTTKNAPKGKVV 331
Y + F ++ +I D + I N E T +AP +++
Sbjct: 304 NVEHNLYVIRNFQEAIANKSAFKVEALIDNFDACYYYITNTKQGEYFFLTNLSAPFNRLI 363
Query: 332 TINLNN-----PCEKN---WKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383
+I LN+ P K+ +K +IPE ++ L+ V+ + K V Y ++V+ +++++D
Sbjct: 364 SIQLNDDQPIVPNSKSKLEFKEIIPE-KDYVLESVSRSSQEKFYVSYQKHVQDIIEVYDF 422
Query: 384 NTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTI 443
N GK L L +S ++ +F F++ + P Y+ D + + +
Sbjct: 423 N-GKYLKDIKLPGPGSASLSATEYHDHIFINFSNLVSPSVTYY-------MDSKNDELLL 474
Query: 444 FRETIVPEFEPTLFQTKQVYFRS-KDGTRVPMYIIHR-VGALRNRRNPVIIYGYGGYGVS 501
F+E + F+ + ++ KQV++ S KD T++PM+I ++ + + P + GYGG+ +S
Sbjct: 475 FKEPHIEGFKSSDYECKQVFYESPKDKTKIPMFIAYKKTTDITSGNAPTYMTGYGGFNIS 534
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+FSI FL FNGI+ I NIRGGGE G+ WH AG KQNCFDDF AAEY+I
Sbjct: 535 YTQSFSIRNIYFLNKFNGIFVIANIRGGGEYGKAWHEAGSKKNKQNCFDDFIGAAEYLIK 594
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT + + GGSNGGLL+GA NQRP+L+ + VG +DMLRF+ TI S++
Sbjct: 595 ENYTNQNKLAVRGGSNGGLLMGAISNQRPDLFKCVVADVGVMDMLRFHLHTIGSNWVSDY 654
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681
G +N F L+ YSPL+N VP ++ QYP+ ++ TGDHDDRV P HSYKFI+ LQ ++
Sbjct: 655 GRSDNPDDFDVLIKYSPLNN--VPKDSNQYPSIMLCTGDHDDRVIPAHSYKFISELQYQL 712
Query: 682 GSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728
G PLL+RV++D+GHG G L K E+ DI+ F K L +K
Sbjct: 713 GKKV--DTPLLIRVDKDSGHGAGKGLSKQNNEIADIFNFFSKVLNVK 757
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P24555|PTRB_ECOLI Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 184/709 (25%), Positives = 314/709 (44%), Gaps = 73/709 (10%)
Query: 37 HGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPY----CQNHTDREAIKEQLLRMANYEK 92
HG D Y WL ++ ++ +++Q S + Q +KE + R+ E
Sbjct: 15 HGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRILKEIIDRIPQRE- 73
Query: 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTE-----VFLDPNKLSKDGT-TALKL 146
SAP + N Y Y H +Y QR S E LD NK + ++
Sbjct: 74 VSAPYIK-NGYRYRHIYEPGCEYAIY-QRQSAFSEEWDEWETLLDANKRAAHSEFYSMGG 131
Query: 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQ 206
A + + A + ++++TG YPE+L NV+ PS W +D F+Y +
Sbjct: 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWIFYYVR 190
Query: 207 YCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRS-LGLHSEVTDCGRYLL 265
+ +++ H +GT +D + E + + LH T Y++
Sbjct: 191 ----------KHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHK--TTSKHYVV 238
Query: 266 VSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNA 325
+ ++ T L D +++ P +P H + + +++ ++
Sbjct: 239 IHLASATTSEV-------RLLDAEMADAEPF-VFLPRRKDHEYSLDHYQHRFYLRSNRHG 290
Query: 326 PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNT 385
+ + + E+ W+ LIP EN L+ + + L+V Q R + L +N
Sbjct: 291 KNFGLYRTRMRD--EQQWEELIPPRENIMLEGFT-LFTDWLVVEERQ--RGLTSLRQINR 345
Query: 386 GKR--LHSFPLDLGQITHISGRRKYN------EVFYGFTSFLQPGTIYHCNIPENITDQD 437
R + D +T I+ YN + YG++S P T++ D D
Sbjct: 346 KTREVIGIAFDDPAYVTWIA----YNPEPETARLRYGYSSMTTPDTLFEL-------DMD 394
Query: 438 DFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG 497
+ + ++T VP F ++++ ++ ++DG VP+ +++ R NP+++YGYG
Sbjct: 395 TGERRVLKQTEVPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGS 454
Query: 498 YGVSVLPTFSISRCMFL-RHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAA 556
YG S+ FS SR L R F +YAI ++RGGGELG+ W+ G+ LKK+N F+D+ A
Sbjct: 455 YGASIDADFSFSRLSLLDRGF--VYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDAC 512
Query: 557 EYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF---NKFTI 613
+ ++ Y P MGGS GG+L+G +NQRPEL+ + V +D++ +
Sbjct: 513 DALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPL 572
Query: 614 AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKF 673
E+G+P + ++ + SYSP N+ YP LV TG HD +V K+
Sbjct: 573 TTGEFEEWGNPQDPQYYEYMKSYSPYDNVTA----QAYPHLLVTTGLHDSQVQYWEPAKW 628
Query: 674 IATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722
+A L+E L + LLL + D+GHG + KS E + Y FL+
Sbjct: 629 VAKLRE----LKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLV 673
|
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Escherichia coli (strain K12) (taxid: 83333) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 8 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 734 | ||||||
| 357629634 | 706 | putative prolyl endopeptidase isoform 1 | 0.950 | 0.988 | 0.506 | 0.0 | |
| 345480007 | 783 | PREDICTED: prolyl endopeptidase-like [Na | 0.953 | 0.893 | 0.490 | 0.0 | |
| 321468258 | 708 | hypothetical protein DAPPUDRAFT_304946 [ | 0.955 | 0.990 | 0.473 | 0.0 | |
| 383857012 | 770 | PREDICTED: prolyl endopeptidase-like [Me | 0.950 | 0.906 | 0.475 | 0.0 | |
| 194761818 | 755 | GF14099 [Drosophila ananassae] gi|190616 | 0.949 | 0.923 | 0.502 | 0.0 | |
| 289739935 | 717 | putative serine protease [Glossina morsi | 0.952 | 0.974 | 0.483 | 0.0 | |
| 195050557 | 711 | GH13380 [Drosophila grimshawi] gi|193899 | 0.949 | 0.980 | 0.494 | 0.0 | |
| 291227779 | 716 | PREDICTED: prolyl endopeptidase-like [Sa | 0.950 | 0.974 | 0.483 | 0.0 | |
| 24583414 | 756 | CG5355 [Drosophila melanogaster] gi|2294 | 0.949 | 0.921 | 0.495 | 0.0 | |
| 307177097 | 706 | Prolyl endopeptidase [Camponotus florida | 0.952 | 0.990 | 0.468 | 0.0 |
| >gi|357629634|gb|EHJ78277.1| putative prolyl endopeptidase isoform 1 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/709 (50%), Positives = 481/709 (67%), Gaps = 11/709 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP+ R+DETV D+YHG + DPYRWLE P ET+ F +NNI+ P+ + + I
Sbjct: 5 YPEARRDETVVDNYHGTNVSDPYRWLEDPDSDETKAFIEAENNITRPFLDSCPVKTDINS 64
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L + NY KYS P R+ + YF+F N GLQN ++LYVQ +L G VFLDPN LS+DGT
Sbjct: 65 RLTELWNYPKYSCPFRRGDRYFFFKNTGLQNQNVLYVQDSLDGEPRVFLDPNTLSEDGTI 124
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL F+++G FAY LS SGSDW T+H+KDV TG DYPEVL+ VKF S+SWT D+KG
Sbjct: 125 ALSGSRFTEDGSTFAYGLSASGSDWITIHLKDVATGVDYPEVLEKVKFASMSWTKDNKGL 184
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY++Y + G DG+ET + QK+ YH L T Q+ D+ VVEFP + +EV+DCGR
Sbjct: 185 FYSRYPEQTGKTDGSETDVNRDQKLCYHRLNTPQEDDVIVVEFPQEPLWRIGAEVSDCGR 244
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
YLLVS + + + L + DL S ++G L ++ + +E I N G I +T
Sbjct: 245 YLLVSPVRDCRDNLLFFADLSS---ASLTGHLQLTQIVHKFEADYEYITNEGSVCIFRTN 301
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
KNAP +++ I+LNNP E+NW+TLI E LD +AV +KL++HYI++V+SV+ LH
Sbjct: 302 KNAPNYRLIKIDLNNPAEENWETLIAEHPTDVLDWASAVDKDKLVIHYIRDVKSVLQLHS 361
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
+ TG + +F L +G I SG+++ +E+FY F SFL PG IYH + + + PT
Sbjct: 362 MKTGDLMQNFDLGVGSIVGFSGKKEQSEIFYHFMSFLTPGVIYHVDFKKQ-----PYAPT 416
Query: 443 IFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV 502
IFRE V F+ + ++ KQV++ SKDGTRVPM+I+ + G R+ P ++YGYGG+ ++V
Sbjct: 417 IFREVKVKGFDASQYEAKQVFYSSKDGTRVPMFIVSKKGLPRDGSRPALLYGYGGFNINV 476
Query: 503 LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562
P+FS++R +F++HF G A+PNIRGGGE GE WHNAGRLL KQN FDDF +A EY++ +
Sbjct: 477 QPSFSVTRIVFMQHFEGSVAVPNIRGGGEYGERWHNAGRLLNKQNVFDDFISAGEYLVRE 536
Query: 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG 622
YT+P + + GGSNGGLLV A NQRP+L GAA++ VG LDMLRF KFTI + S++G
Sbjct: 537 GYTRPGLLAVQGGSNGGLLVAAVANQRPDLLGAAIVQVGVLDMLRFQKFTIGHAWISDYG 596
Query: 623 SPNNKTHFHNLLSYSPLHNIKVPPN--NTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
S +NKTHF NLL YSPLHNI+ P N +YPATLVLT DHDDRV PLHS K+IATLQ
Sbjct: 597 SSDNKTHFENLLKYSPLHNIQSPDNVSRAEYPATLVLTADHDDRVVPLHSLKYIATLQHA 656
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+ P Q+ PLL R++ AGHG G P K I+E TDI FL ++LGLK+
Sbjct: 657 VRGTP-QRRPLLARIDTKAGHGGGKPTAKIIDEHTDILCFLAQTLGLKF 704
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345480007|ref|XP_001603578.2| PREDICTED: prolyl endopeptidase-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/707 (49%), Positives = 484/707 (68%), Gaps = 7/707 (0%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YPK R+DET D YHG++IKDPY+WLE P ET+ + QN I+ P+ Q R+AI +
Sbjct: 83 YPKARRDETAVDVYHGVEIKDPYKWLEDPESEETKAYVDAQNAITVPFIQACPKRQAIHD 142
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L ++ +Y KYS P ++ + Y++F N GLQN S+ YVQ +L G VFLDPN S DGT
Sbjct: 143 RLKQLWDYPKYSCPAKKGSKYYFFMNTGLQNQSVFYVQDSLDGEPRVFLDPNTFSTDGTV 202
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
A+ FS++G +AY LS SGSDWNT+H + TG+ YPEVL+ VK+ SI+WTHD+ G
Sbjct: 203 AISSGEFSEDGGIYAYALSASGSDWNTIHFINTKTGEKYPEVLEKVKYSSITWTHDNVGV 262
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY Y + ADG+ET + QK+ YH +GT Q +D+ VV+FP + ++VTDCGR
Sbjct: 263 FYACYPEQLEKADGSETFVNKNQKLCYHKVGTPQSEDVVVVDFPEHPLWRIDAKVTDCGR 322
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
+L+V + +L +F + +G I GK PL V+ ++ +E + N G + + +T
Sbjct: 323 WLVVMPQQECR-DNLVFFAKLNTAEG-IKGKLPLTEVVGNLEADYEYVTNVGTKAVFRTN 380
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
KNAP K++ + N E +W LI E LD AV +KL+V YI++V++V+ +H
Sbjct: 381 KNAPNFKLIATDFENYQENSWSELIAEHSRNVLDWATAVDKDKLVVCYIEDVKNVLGVHS 440
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
L TGK + PLD+G + SG KY+E+FY FTSFL PG IY ++ EN + KP
Sbjct: 441 LETGKLIRQLPLDVGTVVGFSGDLKYSEIFYQFTSFLTPGIIYTLDLKEN-----EEKPK 495
Query: 443 IFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV 502
+FRE V +F+ + ++T Q+++ SKDGT++PM+I+H+ + + +P ++YGYGG+ VS+
Sbjct: 496 VFREIKVNDFDASSYKTTQIFYSSKDGTKIPMFIVHKKDLVLDGSSPALLYGYGGFNVSI 555
Query: 503 LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562
PTFS++R +FL+H NG+ AIPNIRGGGE GE WHN GR KQN FDDFQ AAEY+I+
Sbjct: 556 QPTFSVTRLVFLQHLNGVLAIPNIRGGGEYGEKWHNGGRFTNKQNVFDDFQCAAEYLIDN 615
Query: 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG 622
+YT PK + I GGSNGGLLVGAC+NQRP+L+GAA+ VG +DML+F+KFT+ Y S++G
Sbjct: 616 RYTSPKKLIIQGGSNGGLLVGACINQRPDLFGAAIAQVGVMDMLKFHKFTVGYAWTSDYG 675
Query: 623 SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682
S +++ HF NLL YSPLHN+K P + QYPATL+LT DHDDRV PLHS K IATLQ +IG
Sbjct: 676 SSDDREHFKNLLKYSPLHNVKPPKDGGQYPATLLLTADHDDRVVPLHSLKLIATLQHEIG 735
Query: 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
SLP Q NP+L+R++ AGHG+G P K I+E TDI F++++L L++
Sbjct: 736 SLPQQTNPILIRIDVKAGHGRGKPTSKVIDESTDILSFVVQTLNLEF 782
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321468258|gb|EFX79244.1| hypothetical protein DAPPUDRAFT_304946 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/707 (47%), Positives = 485/707 (68%), Gaps = 6/707 (0%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP ++ + E+ HG+ ++DPYRWLE P AETQ F +QN ++ PY Q +IK
Sbjct: 6 YPIAKRTDFSEN-LHGIAVEDPYRWLEDPDSAETQEFVRLQNELTTPYIQGSPALSSIKT 64
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L + N+ KYS P ++ N+YF++ N GLQNHS+L+VQ +L +FLDPN LS DGT
Sbjct: 65 RLTELWNFPKYSCPTKKGNHYFFYKNSGLQNHSVLFVQDSLESEPRIFLDPNTLSDDGTV 124
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
+L + FS++G+ FAY LS+SGSDWN++H K V TG+D+PEVL+ +KF SISWTHD KG
Sbjct: 125 SLSMKKFSEDGEIFAYGLSQSGSDWNSIHFKCVKTGEDFPEVLEKIKFSSISWTHDRKGV 184
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY+ Y + G DG+ETT++ K++YH +GT+Q +DI VVEF + VTDCGR
Sbjct: 185 FYSCYPEQQGKTDGSETTSNENHKLFYHRIGTQQSEDILVVEFSEEPKWRIQGGVTDCGR 244
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
YL+V+T + Q +++++ DL +LP+ ISGK L TV+ M+ +E + N G ++ +T
Sbjct: 245 YLIVTTGRDCQYNNVYFCDLTALPNQAISGKLELTTVVDKMEADYEYVTNTGAVVVFRTN 304
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
K+AP +++ I+ N P + WKTL+ D + LD VA + +KLIV Y+ +V++++ L D
Sbjct: 305 KDAPNYRLIQIDFNQPEREQWKTLLEADPSDVLDWVACINKDKLIVCYMHDVKNILQLRD 364
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
L G+ L ++ L++G + SG+ +E F+ F SFL PG IY C+I E++ + +PT
Sbjct: 365 LQNGQLLKTYALEMGTVREFSGKNTSSEFFFQFGSFLTPGVIYRCDIGESV----EAEPT 420
Query: 443 IFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV 502
+FR+ + F+P+LF+T+QV++ SKDGTR+PM+I+ + + + NP ++YGYGG+ +S+
Sbjct: 421 VFRQIELNGFDPSLFETQQVFYPSKDGTRIPMFIVKKKTVVLDGTNPCLMYGYGGFNISL 480
Query: 503 LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562
P FS++R +F++HFNG++A+PNIRGGGE GE WH+ GRL KQN FDDF +AAEY+I
Sbjct: 481 EPAFSVTRIVFMQHFNGVFAVPNIRGGGEYGEAWHDGGRLFNKQNSFDDFHSAAEYLIAN 540
Query: 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG 622
YT + I G SNGGLL+GAC+NQRPELY A + VG +DMLRF+KFT+ Y S++G
Sbjct: 541 GYTSSSKLAIQGASNGGLLIGACVNQRPELYAAGIAHVGVMDMLRFHKFTVGYCWVSDYG 600
Query: 623 SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682
SP K F NLL +SPLHN+KVP QYPA L+LT DHDDRV PLHS K++A +
Sbjct: 601 SPEEKAAFENLLKFSPLHNLKVPETG-QYPAMLLLTADHDDRVVPLHSLKYMAQMHHTFR 659
Query: 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
P Q NPL++R+E AGHG P K I+E +D++ FL ++L L++
Sbjct: 660 DCPKQTNPLMIRIETKAGHGANKPTSKIIDEHSDVFAFLARALNLEF 706
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857012|ref|XP_003704000.1| PREDICTED: prolyl endopeptidase-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/707 (47%), Positives = 488/707 (69%), Gaps = 9/707 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP+ +DE++ D+YHG+++ DPYRWLE P +T+ F QN ++ PY ++ R+ I +
Sbjct: 71 YPEAYRDESIVDNYHGVEVPDPYRWLEDPDSEQTKAFVDAQNAVTKPYLESCKARQDIHD 130
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L ++ ++ KYS P R N Y+++ N GLQN S+LYVQ L VFLDPN LS DGT
Sbjct: 131 RLKQLWDFPKYSCPARYGNKYYFYKNTGLQNQSVLYVQDTLDSEPRVFLDPNTLSDDGTV 190
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
A++ FS++G +AY LS SGSDW T+H + +TG+ YPE+L+ VKF I+WTHD++G
Sbjct: 191 AIRSSKFSEDGSIYAYGLSSSGSDWCTIHFMNTETGEKYPEILEKVKFSPITWTHDNRGI 250
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY Y D G DG+ET + QK+ YH++GT Q +D+ VEFP + +EV+DCG+
Sbjct: 251 FYGCYPDQKGKTDGSETEGNRDQKLCYHIVGTPQSEDVIAVEFPEEPLWRIGAEVSDCGK 310
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
+L+V+ + + + +++ +L +PD KI+ K L V+ ++ +E + N+G + I +T
Sbjct: 311 WLIVTPVKDCRDNLVYFTEL--IPDTKITEKLQLTQVVDKLEADYEYVTNDGTKAIFRTN 368
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
KNAP K++ I+L + ++ W L+PE + LD AV +K + YI++V++++ LH
Sbjct: 369 KNAPNYKLIAIDLLDYKQEKWIDLLPEHPDNVLDWACAVDGDKFVACYIEDVKNILQLHS 428
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
L TG+++ +FPLD+G I + +G++KY+E+FY F SFL PG IY ++ + D +P
Sbjct: 429 LKTGEKIRTFPLDVGTIVNFAGQKKYSEIFYQFKSFLIPGIIYKVDL------KTDEEPQ 482
Query: 443 IFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV 502
+ RE V F+P+L++T QV++ SKDGTR+PM+I+ + A+ + P ++YGYGG+ VS+
Sbjct: 483 VLREIKVKNFDPSLYKTSQVFYTSKDGTRIPMFIVMKHDAVLDSSMPALLYGYGGFNVSI 542
Query: 503 LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562
PTFS+++ +F++H NG+ A+ NIRGGGE GE WHN GR KQN FDDFQAAAEY+I+
Sbjct: 543 QPTFSVTKLVFVQHLNGVLAVANIRGGGEYGEKWHNGGRFFNKQNVFDDFQAAAEYLIDN 602
Query: 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG 622
YT ++I+GGSNGGLL+ AC NQRP+L+GAA+ VG +DMLRF+KFTI S++G
Sbjct: 603 GYTTASKLSILGGSNGGLLIAACANQRPDLFGAAIAQVGVMDMLRFHKFTIGVAWVSDYG 662
Query: 623 SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682
S ++ HF NLL YSPLHN++VP N QYPATL+LT DHDDRV PLHS K IATLQ +G
Sbjct: 663 SSDDPKHFENLLKYSPLHNVRVPENG-QYPATLLLTADHDDRVVPLHSLKLIATLQNTLG 721
Query: 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
LP Q NPLL+++E AGHG G P MK IEE TDI F++KSL L++
Sbjct: 722 KLPQQTNPLLIKIETKAGHGGGKPTMKVIEESTDILAFIVKSLDLEF 768
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194761818|ref|XP_001963120.1| GF14099 [Drosophila ananassae] gi|190616817|gb|EDV32341.1| GF14099 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/708 (50%), Positives = 477/708 (67%), Gaps = 11/708 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP RKD TVEDD+HG IKD YRWLE P AET+ F QNNIS P+ ++ + I E
Sbjct: 51 YPIARKDPTVEDDFHGTPIKDVYRWLEDPDSAETEEFVNAQNNISRPFLESGDQWKKINE 110
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L ++ NY KY P R N Y+YF N GLQN S++Y Q+ L ++VFLDPN LS+DGT
Sbjct: 111 KLTKLWNYPKYGCPYRHGNYYYYFMNTGLQNQSVMYQQKTLEDESQVFLDPNSLSEDGTI 170
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL FS++GK+ AY LS+SGSDW + I+D +TGKD EVL+ VKF ISWT D+KGF
Sbjct: 171 ALTQKTFSEDGKYMAYGLSESGSDWVKILIRDAETGKDLSEVLEKVKFSEISWTKDNKGF 230
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY +Y D +G DG+ET + QK+YYH +G QDKD VVEFP S + S V+DCG+
Sbjct: 231 FYGRYPDQDGKTDGSETKQNENQKLYYHRVGESQDKDTLVVEFPEEPSWRIQSTVSDCGK 290
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
YL+++ + + + + Y DL P +I+ K +K ++ + +E I N G ++ +T
Sbjct: 291 YLILAIVKDCRDNIVFYADLQ--PGEEINSKLNVKKIVEKFEADYEYITNEGSKVYFRTN 348
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
K AP +++ I+ P E NW+TLI E ++ LD V V +KL+V+YI++V+SV+ +H
Sbjct: 349 KKAPNYQLIVIDFEKPEEANWQTLIAEHKSDVLDWVKCVDGDKLLVNYIRDVKSVLQVHS 408
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
LN GK + F LD+G I +G ++Y+E+FY ++SFL PGTIY + D KP
Sbjct: 409 LNDGKLVREFDLDIGTIVGTTGEKRYSEIFYNYSSFLNPGTIYQYDFK-----TPDQKPK 463
Query: 443 IFRETI--VPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
IFRE + F + +Q+++ SKDGT+VPM+II + R P ++YGYGG+ +
Sbjct: 464 IFREIKLNLEGFRQEDYAVEQIFYSSKDGTKVPMFIIAKKSDSIEPR-PCLLYGYGGFNI 522
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
S+LP+F +S MF+ F+G+ A PN+RGGGE GE WHN GRLL KQN FDDFQAAAEY+I
Sbjct: 523 SMLPSFGLSGLMFIDTFDGVLAYPNLRGGGEYGEKWHNGGRLLNKQNVFDDFQAAAEYLI 582
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+ KYT + I GGSNGGLLVG+C+NQRP+L+GAA+ VG +DMLRF+KFTI + S+
Sbjct: 583 DNKYTTKDRLAIQGGSNGGLLVGSCINQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSD 642
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPNN-TQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+G+P+ K HF NL +SPLHN+ P ++ T+YP+TL+LT DHDDRV PLHS KFIA LQE
Sbjct: 643 YGNPSEKEHFENLYKFSPLHNVHTPKSDETEYPSTLILTADHDDRVSPLHSLKFIAALQE 702
Query: 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727
+ +QKNPLLLRV Q AGHG G P K IEE TDI FL KSL +
Sbjct: 703 AVRESEFQKNPLLLRVYQKAGHGAGKPTSKRIEEATDILTFLAKSLNI 750
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289739935|gb|ADD18715.1| putative serine protease [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/711 (48%), Positives = 482/711 (67%), Gaps = 12/711 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP+ R+D +V D +HG+++KD YRWLE P ETQ F +N IS P+ + +R++I E
Sbjct: 14 YPEAREDHSVSDTFHGVEMKDVYRWLEDPDSVETQQFVNEENKISQPFL-DCDERKSIYE 72
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+LL++ NYEKY P + N Y++ N GLQN S+LY Q+ L+ VFLDPN LS+DGT
Sbjct: 73 KLLKLWNYEKYGCPMKHGNYYYFNKNSGLQNQSVLYQQKTLSDEPSVFLDPNALSEDGTI 132
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL +FS+NGK+ AY LS+SGSDW +H++DV+ GKD EVL+ VKF ISWT D+KGF
Sbjct: 133 ALSQISFSENGKYMAYGLSESGSDWVKIHVRDVEKGKDVDEVLEKVKFSDISWTKDNKGF 192
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY Y D G DG+ET + QK+YYH +G Q +DI + EFP+ + + SEV+DCG+
Sbjct: 193 FYGCYLDQEGKTDGSETKQNENQKLYYHYVGKSQKEDILIAEFPDEPTWRIQSEVSDCGK 252
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
YL++ + + + L+Y +L + + K + +I + ++ I N G ++ ++T
Sbjct: 253 YLIIPIVKDCRDNILYYSELDTT--STMPSKLKMHKIIEKFEADYDYITNIGSKVYLRTN 310
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
KNAP +V+ I+ NP E NW TLIPE E LD V V ++KL++ YIQ+V+S + ++
Sbjct: 311 KNAPNYRVIVIDFENPSESNWITLIPEHEKDVLDWVKCVDDDKLVLCYIQDVKSALQVNA 370
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
L+ GK + F LD+G I +SG++KY+EVF+ F+SFL PGTIYH + DF+P
Sbjct: 371 LSDGKLIGKFKLDIGTIVSLSGKKKYSEVFFNFSSFLNPGTIYHYDFTSK-----DFQPK 425
Query: 443 IFRETI--VPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
I RE + +F+PT + KQ+++ SKDGT++PM+I+ + + R P ++YGYGG+ +
Sbjct: 426 IHREIKLNLQDFKPTNYDVKQIFYNSKDGTKIPMFIVQKQADVTTPR-PCLLYGYGGFNI 484
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
S+ PTFS++ +F+ FNGI A PN+RGGGE GE WHN+GRLL KQN FDDF AAAEY+I
Sbjct: 485 SIQPTFSLTGLLFMETFNGIIAYPNLRGGGEYGEKWHNSGRLLNKQNVFDDFHAAAEYLI 544
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+ YT + I GGSNGGLLV AC+NQRP+L+GAA+ VG LDMLRF+KFTI + S+
Sbjct: 545 DNNYTSKDRLVIQGGSNGGLLVCACINQRPDLFGAAVAQVGVLDMLRFHKFTIGHAWCSD 604
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPN-NTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+G+PN + HF NLL YSPLHN++ P + +YP+TL+LT DHDDRV PLHS KF A LQ
Sbjct: 605 YGNPNEEEHFKNLLKYSPLHNVRTPQSPKEEYPSTLILTADHDDRVSPLHSLKFAAALQT 664
Query: 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYY 730
+ + P+Q NP+LLRV AGHG G P K IEE D+ F++K+L + +
Sbjct: 665 AVRNSPFQNNPILLRVYSKAGHGAGKPTSKKIEEAADVLTFILKTLNIDQF 715
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195050557|ref|XP_001992919.1| GH13380 [Drosophila grimshawi] gi|193899978|gb|EDV98844.1| GH13380 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/708 (49%), Positives = 478/708 (67%), Gaps = 11/708 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP RKD+T+EDD+HG KIKD YRWLE P AETQ + QNNIS P+ +N + I
Sbjct: 7 YPVARKDQTIEDDFHGSKIKDVYRWLEDPDAAETQEYVNSQNNISQPFLENCEQWKKINS 66
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L ++ NY KY P + Y++F N GLQN S++Y Q +L G ++VFLDPN LS+DGT
Sbjct: 67 KLTKLWNYPKYGCPMQYGKYYYFFMNTGLQNQSVMYQQDSLHGESKVFLDPNGLSEDGTV 126
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL +FSD+GK AY LS+SGSDW + I+D +TGKD+ EVL+ VKF ISWT D+KGF
Sbjct: 127 ALSQKSFSDDGKFMAYGLSESGSDWIKIRIRDAETGKDFDEVLEKVKFSEISWTKDNKGF 186
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY +Y D +G DG+ET + QK+YYH+LG Q KD+ VV+FP S + S+V+DCG+
Sbjct: 187 FYGRYPDQDGKTDGSETKQNEHQKLYYHLLGQSQAKDVLVVQFPKEPSWRIQSKVSDCGK 246
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
YL+++ + + + ++Y DL P +I + +K ++ + ++ + N G ++ +T
Sbjct: 247 YLILAIVKDCRDNIIYYADLK--PGEEIVSELDVKIIVDKFESDYDYVTNVGSKVYFRTN 304
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
KNA +++ I+ NP E NW+TLIPE E L+ V V +KL++ YI++V++++ +
Sbjct: 305 KNAQNYRIIIIDFENPGEANWETLIPEHEKDVLEWVKCVNEDKLLLCYIRDVKTILQANS 364
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
L TGK + F LD+G I SG++KY+E+FY F+SFL PGTIYH + D P
Sbjct: 365 LETGKLIRQFDLDIGTIVGTSGKKKYSEIFYNFSSFLNPGTIYHYDFK-----HPDEPPK 419
Query: 443 IFRETI--VPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
+FRE + F + +Q+++ SKDGT+VPM+II + + R P ++YGYGG+ +
Sbjct: 420 VFREIKLNLDGFRREDYAVEQIFYSSKDGTKVPMFIIRKNKNVLEPR-PCLLYGYGGFNI 478
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
S+LPTF I+ MF+ F+G+ A PNIRGGGE GE WHN GRLL KQN FDDFQ AAEY+I
Sbjct: 479 SMLPTFGITGLMFVDTFDGVLAYPNIRGGGEYGEKWHNGGRLLNKQNVFDDFQCAAEYLI 538
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
N KYT + I GGSNGGLLVGAC+NQRP+L+GAA+ VG +DMLRF+KFTI + S+
Sbjct: 539 NNKYTTKDRLAIQGGSNGGLLVGACINQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSD 598
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPN-NTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+G+P+ K HF NL +SPLHN+ P N N +YP+TL+LT DHDDRV PLHS KF A LQE
Sbjct: 599 YGNPSEKEHFDNLYKFSPLHNVHTPQNENKEYPSTLILTADHDDRVSPLHSLKFAAALQE 658
Query: 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727
+ +Q+NPLLLRV + AGHG G P K IEE TDI F+ SL +
Sbjct: 659 AVRDSKHQQNPLLLRVYKKAGHGAGKPTSKRIEEATDILTFMYLSLKM 706
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291227779|ref|XP_002733861.1| PREDICTED: prolyl endopeptidase-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/711 (48%), Positives = 478/711 (67%), Gaps = 13/711 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YPK R+DE+ +DYHG KI +PY WLE P ET+ F QN ++ PY + R+ +
Sbjct: 5 YPKARRDESKIEDYHGTKIAEPYEWLEDPDSEETKAFVEAQNAVTMPYLEKCKIRQKFHD 64
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L M ++ KY P ++ YFYF+N GLQN S+LYVQ ++ +VFLDPNK S DGT
Sbjct: 65 RLKAMWDFPKYGCPFKRGPRYFYFYNTGLQNQSVLYVQDSIEAEAKVFLDPNKFSDDGTV 124
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ Y+F+++G++ AY LS SGSDW T+ V ++ P++LK VKF +SWTHD KG
Sbjct: 125 ALRGYSFTEDGEYLAYGLSDSGSDWVTVKFMKVAGSEELPDILKRVKFSCMSWTHDGKGL 184
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN+Y + G DGTETTA++ QK+ YH+LGTEQ D+ EFP+ +E+TD GR
Sbjct: 185 FYNRYLEQEGKTDGTETTANLDQKLCYHILGTEQSSDVLCAEFPDEPKWMSGAELTDDGR 244
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S S +G D L+Y D+ +L DG I G P ++ D +E IAN G
Sbjct: 245 YILLSIS---EGCDPVNRLYYCDMKTLTDG-IKGLIPWVKLVDNFDAEYEYIANEGTLFT 300
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT N+P+ K++ I+++ P +NWK LI + + L+ + V N+KL++ Y+ +V+S +
Sbjct: 301 FKTNLNSPRYKLINIDISKPEMENWKDLISQADTDVLEWASCVNNDKLMLCYLHDVKSQL 360
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LH+LNTG RL +FPLD+G IT SG++K +E+FY FTSFL PG IY C++ D
Sbjct: 361 YLHELNTGNRLTTFPLDVGTITGYSGKKKDHEIFYQFTSFLTPGIIYRCDLS-----ADK 415
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498
+P++FR+ V F+ + FQT QV+F SKDGT++PM+I+HR G + +PV++YGYGG+
Sbjct: 416 LEPSVFRQIDVKGFDQSQFQTVQVFFSSKDGTKIPMFIVHRKGIELDGSHPVLLYGYGGF 475
Query: 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P FS+SR +F++H GI AIPNIRGGGE GE WH G L KQNCFDDFQ AA++
Sbjct: 476 NISITPGFSVSRIVFIQHLGGILAIPNIRGGGEYGETWHKGGMLANKQNCFDDFQFAAQW 535
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I KYT IT+ GGSNGGLLV AC NQRP+L+G + VG +DML+F+KFTI +
Sbjct: 536 LIENKYTSANKITLNGGSNGGLLVAACANQRPDLFGCIINQVGVMDMLKFHKFTIGHAWI 595
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
++FG K +F L+ YSPLHNIK P +TQYP+ L+LT DHDDRV PLHS K+IA LQ
Sbjct: 596 TDFGCSEKKDNFEYLIKYSPLHNIKSPDGDTQYPSMLLLTADHDDRVVPLHSLKYIAELQ 655
Query: 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+GS Q NPL++R++ AGHG G P K IEE +D+Y F+ ++L +++
Sbjct: 656 HTMGSESKQTNPLMIRLDTKAGHGAGKPTAKVIEEYSDVYGFIAENLKVEW 706
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
| >gi|24583414|ref|NP_609397.2| CG5355 [Drosophila melanogaster] gi|22946157|gb|AAF52942.2| CG5355 [Drosophila melanogaster] gi|54650756|gb|AAV36957.1| LP07359p [Drosophila melanogaster] gi|220952068|gb|ACL88577.1| CG5355-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/710 (49%), Positives = 476/710 (67%), Gaps = 13/710 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP RKDE+V +D+HG +IKD YRWLE P ET+ F QN+IS P+ +N + + +
Sbjct: 50 YPVARKDESVAEDFHGTQIKDVYRWLEDPDSTETEEFVNAQNSISRPFLENGEEWKKLNT 109
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTE--VFLDPNKLSKDG 140
+L ++ NY KY P R N Y+YF N GLQN S++Y Q++L +E VFLDPN LS+DG
Sbjct: 110 KLTKLWNYPKYGCPMRYGNYYYYFMNTGLQNQSVMYQQKSLGDESESKVFLDPNTLSEDG 169
Query: 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHK 200
T AL AFS++GK+ AY LS+SGSDW + I+D +TGKD EVL+ VKF ISWT D+K
Sbjct: 170 TIALTQKAFSEDGKYMAYGLSESGSDWIKILIRDAETGKDLSEVLEKVKFSEISWTKDNK 229
Query: 201 GFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC 260
GFFY +Y D +G DG+ET + QK+YYH +G QDKD VVEFP S + S V+DC
Sbjct: 230 GFFYGRYPDQDGKTDGSETKQNENQKLYYHRVGESQDKDTLVVEFPEEPSWRIQSTVSDC 289
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
G+YL+++ + + + + Y DL P +I+ K +K ++ + ++ I N G ++ +
Sbjct: 290 GKYLILAIVKDCRDNIVFYADL--TPGAEITSKLNVKKIVEKFEADYDYITNEGSKIFFR 347
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T KNAP +V+ I+ NN E W+TLI E ++ LD V V N+KL+V YI++V+SV+ +
Sbjct: 348 TNKNAPNYQVIAIDFNNSAEDKWETLIAEHKSDVLDWVKCVDNDKLLVCYIRDVKSVLQV 407
Query: 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
+ L G L F LD+G I SG +KY+E+FY F+SFL PG+IY + D
Sbjct: 408 NSLKDGTLLREFDLDIGTIVGTSGEKKYSEIFYNFSSFLNPGSIYRYDFK-----TPDKS 462
Query: 441 PTIFRETIV--PEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498
P++FRE + F + +Q++++SKDGT+VPM+II + R P ++YGYGG+
Sbjct: 463 PSVFREIKLNLEGFRREDYAVEQIFYKSKDGTKVPMFIIRKKRDSVEPR-PCLLYGYGGF 521
Query: 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+LP+F +S MF+ F+G+ A PN+RGGGE GE WHN GRLL KQN FDDFQAAAEY
Sbjct: 522 NISMLPSFGLSGLMFIDTFDGVLAYPNLRGGGEYGEKWHNGGRLLNKQNVFDDFQAAAEY 581
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I KYT + I GGSNGGLLVG+C+NQRP+L+GAA+ VG +DMLRF+KFTI +
Sbjct: 582 LIENKYTTKDRLAIQGGSNGGLLVGSCINQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWC 641
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVPPN-NTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
S++G+P+ K HF NL +SPLHN+ P T+YP+TL+LT DHDDRV PLHS KFIA L
Sbjct: 642 SDYGNPSEKEHFDNLYKFSPLHNVHTPKGAETEYPSTLILTADHDDRVSPLHSLKFIAAL 701
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727
QE + +QKNP+LLRV Q AGHG G P K IEE TDI FL KSL +
Sbjct: 702 QEAVRDSEFQKNPVLLRVYQKAGHGAGKPTSKRIEEATDILTFLSKSLNV 751
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307177097|gb|EFN66352.1| Prolyl endopeptidase [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/707 (46%), Positives = 477/707 (67%), Gaps = 8/707 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP+ R+DE+V D+YHG++I DPYRWLE P ET+ F QN I+ PY R++I E
Sbjct: 6 YPEARRDESVVDNYHGVEIADPYRWLEDPDSTETKAFVDAQNAITKPYLAACKVRDSIHE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L ++ ++ KYS P + Y+++ N GLQN S+LYVQ L +VFLDPN LS+DGT
Sbjct: 66 RLTQLWDFPKYSCPAKHGGKYYFYKNTGLQNQSVLYVQDTLESEPKVFLDPNTLSEDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
A+ +FS++G FAY LS+SGSDW+T+H + TG+ YPE+L+ VKF I+WTHD++G
Sbjct: 126 AITSSSFSEDGSIFAYGLSESGSDWSTIHFLNAQTGEKYPEILEKVKFSPITWTHDNRGI 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FY QY D G DG+ET + QK+ YH++GT Q D+ +EFP + +EV+DCG
Sbjct: 186 FYGQYRDQQGKTDGSETLGNQNQKLCYHIVGTSQSDDVVAIEFPEEPLWRIGAEVSDCGN 245
Query: 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322
+L+V+ + + + +++ L + D IS PL V+ ++ +E I N G + + +T
Sbjct: 246 WLIVTPLKDCRDNLVYFTPLKAGMD--ISNNLPLTQVVDKLEADYEYITNVGTKAVFRTN 303
Query: 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382
KNAP K++ I+L + + W L+PE LD AV +K + YIQ+V++++ LH
Sbjct: 304 KNAPNYKLIAIDLLDYGQDKWVDLLPEHPENVLDWADAVDGDKFVACYIQDVKNILQLHC 363
Query: 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442
L TGK + +FPLDLG + SG +KY+E+FY FTSFL PG IY ++ + + +P
Sbjct: 364 LKTGKIIRTFPLDLGTVVGFSGEKKYSEIFYQFTSFLTPGIIYTIDL------KKEEEPR 417
Query: 443 IFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV 502
I RE V F+ +L++T Q+++ SKDGT++PM+I+ + A+ + P ++YGYGG+ S+
Sbjct: 418 ILREIKVKGFDASLYKTSQIFYPSKDGTKIPMFIVTKSDAVLDGTMPALLYGYGGFNASI 477
Query: 503 LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562
PTFS++R +F++H NGI A+ N+RGGGE GE WHNAGR +QN FDDFQ AA+Y++
Sbjct: 478 QPTFSVTRLVFIQHLNGILAVANVRGGGEYGERWHNAGRFFNRQNVFDDFQYAAKYLVEN 537
Query: 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG 622
YT +TI GGSNGGL V C+NQRP+L+GAA+ VG +DMLRF+KFTI S++G
Sbjct: 538 GYTTSTKLTIQGGSNGGLAVAVCINQRPDLFGAAIAQVGVMDMLRFHKFTIGSAWVSDYG 597
Query: 623 SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682
S ++ HF NLL YSPLHN+++PP++ QYPATL+LT DHDDRV PLH+ K IATLQ
Sbjct: 598 SSDDAKHFQNLLKYSPLHNVRIPPDDVQYPATLLLTADHDDRVVPLHTLKLIATLQYTFR 657
Query: 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
++ Q+NP+L R++ AGHG G P MK +EE TDI F+++SLGL++
Sbjct: 658 NVSKQENPILARIDTKAGHGGGKPTMKVLEESTDILSFIVQSLGLEF 704
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 734 | ||||||
| FB|FBgn0032242 | 756 | CG5355 [Drosophila melanogaste | 0.949 | 0.921 | 0.488 | 1.4e-183 | |
| MGI|MGI:1270863 | 710 | Prep "prolyl endopeptidase" [M | 0.955 | 0.987 | 0.464 | 1.5e-179 | |
| UNIPROTKB|P48147 | 710 | PREP "Prolyl endopeptidase" [H | 0.957 | 0.990 | 0.462 | 3e-179 | |
| RGD|620841 | 710 | Prep "prolyl endopeptidase" [R | 0.955 | 0.987 | 0.465 | 5e-179 | |
| UNIPROTKB|O70196 | 710 | Prep "Prolyl endopeptidase" [R | 0.955 | 0.987 | 0.465 | 5e-179 | |
| UNIPROTKB|F1NUS2 | 710 | PREP "Uncharacterized protein" | 0.955 | 0.987 | 0.462 | 7.3e-178 | |
| UNIPROTKB|F6QHN4 | 702 | PREP "Prolyl endopeptidase" [B | 0.950 | 0.994 | 0.458 | 1.5e-177 | |
| UNIPROTKB|P23687 | 710 | PREP "Prolyl endopeptidase" [S | 0.957 | 0.990 | 0.455 | 3.1e-177 | |
| UNIPROTKB|Q9XTA2 | 710 | PREP "Prolyl endopeptidase" [B | 0.955 | 0.987 | 0.452 | 1.6e-175 | |
| UNIPROTKB|F1PHW5 | 699 | PREP "Uncharacterized protein" | 0.938 | 0.985 | 0.459 | 1.4e-174 |
| FB|FBgn0032242 CG5355 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1781 (632.0 bits), Expect = 1.4e-183, P = 1.4e-183
Identities = 347/710 (48%), Positives = 470/710 (66%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP RKDE+V +D+HG +IKD YRWLE P ET+ F QN+IS P+ +N + + +
Sbjct: 50 YPVARKDESVAEDFHGTQIKDVYRWLEDPDSTETEEFVNAQNSISRPFLENGEEWKKLNT 109
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTE--VFLDPNKLSKDG 140
+L ++ NY KY P R N Y+YF N GLQN S++Y Q++L +E VFLDPN LS+DG
Sbjct: 110 KLTKLWNYPKYGCPMRYGNYYYYFMNTGLQNQSVMYQQKSLGDESESKVFLDPNTLSEDG 169
Query: 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHK 200
T AL AFS++GK+ AY LS+SGSDW + I+D +TGKD EVL+ VKF ISWT D+K
Sbjct: 170 TIALTQKAFSEDGKYMAYGLSESGSDWIKILIRDAETGKDLSEVLEKVKFSEISWTKDNK 229
Query: 201 GFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC 260
GFFY +Y D +G DG+ET + QK+YYH +G QDKD VVEFP S + S V+DC
Sbjct: 230 GFFYGRYPDQDGKTDGSETKQNENQKLYYHRVGESQDKDTLVVEFPEEPSWRIQSTVSDC 289
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
G+YL+++ + + + + Y DL P +I+ K +K ++ + ++ I N G ++ +
Sbjct: 290 GKYLILAIVKDCRDNIVFYADL--TPGAEITSKLNVKKIVEKFEADYDYITNEGSKIFFR 347
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T KNAP +V+ I+ NN E W+TLI E ++ LD V V N+KL+V YI++V+SV+ +
Sbjct: 348 TNKNAPNYQVIAIDFNNSAEDKWETLIAEHKSDVLDWVKCVDNDKLLVCYIRDVKSVLQV 407
Query: 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
+ L G L F LD+G I SG +KY+E+FY F+SFL PG+IY + D
Sbjct: 408 NSLKDGTLLREFDLDIGTIVGTSGEKKYSEIFYNFSSFLNPGSIYRYDFKT-----PDKS 462
Query: 441 PTIFRETIV--PEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
P++FRE + F + +Q++++SKDGT+VPM+II + R P ++
Sbjct: 463 PSVFREIKLNLEGFRREDYAVEQIFYKSKDGTKVPMFIIRKKRDSVEPR-PCLLYGYGGF 521
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+LP+F +S MF+ F+G+ A PN+RGGGE GE WHN GRLL KQN FDDFQAAAEY
Sbjct: 522 NISMLPSFGLSGLMFIDTFDGVLAYPNLRGGGEYGEKWHNGGRLLNKQNVFDDFQAAAEY 581
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I KYT + I GGSNGGLLVG+C+NQRP+L+GAA+ VG +DMLRF+KFTI +
Sbjct: 582 LIENKYTTKDRLAIQGGSNGGLLVGSCINQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWC 641
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVPPN-NTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
S++G+P+ K HF NL +SPLHN+ P T+YP+TL+LT DHDDRV PLHS KFIA L
Sbjct: 642 SDYGNPSEKEHFDNLYKFSPLHNVHTPKGAETEYPSTLILTADHDDRVSPLHSLKFIAAL 701
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727
QE + +QKNP+LLRV Q AGHG G P K IEE TDI FL KSL +
Sbjct: 702 QEAVRDSEFQKNPVLLRVYQKAGHGAGKPTSKRIEEATDILTFLSKSLNV 751
|
|
| MGI|MGI:1270863 Prep "prolyl endopeptidase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1743 (618.6 bits), Expect = 1.5e-179, P = 1.5e-179
Identities = 329/709 (46%), Positives = 462/709 (65%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET +YHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETSVQEYHGHKICDPYSWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+ YHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S + L Y DL P+G I+G +I + ++ + N G KT
Sbjct: 246 YVLLSIWEGCDPVNRLWYCDLQQEPNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+N+P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++++ LH
Sbjct: 305 NRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNILQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L +FPLD+G + SGR+K +E+FY FTSFL PG IYHC++ + ++ +P
Sbjct: 365 DLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLTK-----EELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V + +QT Q+++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 MVFREVTVKGIDAADYQTIQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT PK +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+KFTI + +++
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G + K HF LL YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDTKQHFEWLLKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYI 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L +++
Sbjct: 660 VGRSRKQSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIEW 708
|
|
| UNIPROTKB|P48147 PREP "Prolyl endopeptidase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 329/711 (46%), Positives = 461/711 (64%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S + L Y DL G I+G +I + ++ + N G KT
Sbjct: 246 YVLLSIREGCDPVNRLWYCDLQQESSG-IAGILKWVKLIDNFEGEYDYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+ +P +V+ I+ +P E WK L+PE E L+ +A V +N L++ Y+ +V++++ LH
Sbjct: 305 NRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHDVKNILQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L +FPLD+G I SG++K E+FY FTSFL PG IYHC++ + ++ +P
Sbjct: 365 DLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK-----EELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 RVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+SR +F+RH GI A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT PK +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+K+TI + +++
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDSKQHFEWLVKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYI 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 660 VGRSRKQSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNVDWIP 710
|
|
| RGD|620841 Prep "prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
Identities = 330/709 (46%), Positives = 463/709 (65%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+ YHVLGT+Q +D+ EFP+ +E++D GR
Sbjct: 186 FYNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S + L Y DL +G I+G +I + ++ I N G KT
Sbjct: 246 YVLLSIWEGCDPVNRLWYCDLQQGSNG-INGILKWVKLIDNFEGEYDYITNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+N+P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y++NV++++ LH
Sbjct: 305 NRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLRNVKNILQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L +FPLD+G + SGR+K +E+FY FTSFL PG IYHC++ +++ +P
Sbjct: 365 DLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT-----REELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V + + +QT QV++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 RVFREVTVKGIDASDYQTIQVFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT K +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+KFTI + +++
Sbjct: 540 EGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G ++K HF LL YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDSKQHFEWLLKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYI 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L +++
Sbjct: 660 VGRSRKQSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLNIEW 708
|
|
| UNIPROTKB|O70196 Prep "Prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
Identities = 330/709 (46%), Positives = 463/709 (65%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+ YHVLGT+Q +D+ EFP+ +E++D GR
Sbjct: 186 FYNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S + L Y DL +G I+G +I + ++ I N G KT
Sbjct: 246 YVLLSIWEGCDPVNRLWYCDLQQGSNG-INGILKWVKLIDNFEGEYDYITNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+N+P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y++NV++++ LH
Sbjct: 305 NRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLRNVKNILQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L +FPLD+G + SGR+K +E+FY FTSFL PG IYHC++ +++ +P
Sbjct: 365 DLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT-----REELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V + + +QT QV++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 RVFREVTVKGIDASDYQTIQVFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT K +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+KFTI + +++
Sbjct: 540 EGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G ++K HF LL YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDSKQHFEWLLKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYI 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L +++
Sbjct: 660 VGRSRKQSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLNIEW 708
|
|
| UNIPROTKB|F1NUS2 PREP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1727 (613.0 bits), Expect = 7.3e-178, P = 7.3e-178
Identities = 328/709 (46%), Positives = 464/709 (65%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP+V +DE DYHG +I DPY WLE P +T+ F QN ++ P+ + R KE
Sbjct: 6 YPEVYRDEAAVLDYHGHQISDPYCWLEDPDSEQTKAFVEAQNKLTVPFLEQCPVRGLFKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YF+F+N GLQN +LYVQ +L +VFLDPNKLS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFHFYNTGLQNQRVLYVQDSLDADAKVFLDPNKLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ V+ ++ P+ L+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSSSGSDWVTIKFMKVEGPEELPDTLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK++YHVLGT Q +DI EFP+ +E++D GR
Sbjct: 186 FYNCYPKQDGKSDGTETSTNLHQKLHYHVLGTNQSEDILCAEFPDEPKWMGGAEISDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S + L Y DL G ISG +I + +E + N G KT
Sbjct: 246 YVLLSIREGCDPVNRLWYCDLQKESQG-ISGILQWVKLIDNFEAEYEYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+++P +++ I+ ++P E WK LIPE E L+ VA V +N L++ Y+ +V++++ LH
Sbjct: 305 NRHSPNYRLINIDFSDPEESKWKVLIPEHERDVLEWVACVRSNFLVLCYLHDVKNILQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L +FPLD+G I SG++K NE+FY FTSFL PG IYHC++ + ++ +P
Sbjct: 365 DLATGAHLKTFPLDVGSIVGYSGQKKDNEIFYQFTSFLSPGIIYHCDLTK-----EELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V F+P+++QT QV++ SKDGT++PM+IIH+ G + +P + +S
Sbjct: 420 RVFREVTVKGFDPSVYQTIQVFYPSKDGTKIPMFIIHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P++S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AA+Y+I
Sbjct: 480 ITPSYSVSRLIFVRHLGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQYAAKYLIR 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT PK +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+K+TI + +++
Sbjct: 540 EGYTSPKKLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPPNN-TQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G ++K F L YSPLHN+K+P + QYPATL+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDHKEQFEWLCKYSPLHNVKLPEEDGIQYPATLLLTADHDDRVVPLHSLKFIATLQYV 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L L +
Sbjct: 660 VGRSRKQTNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNLDW 708
|
|
| UNIPROTKB|F6QHN4 PREP "Prolyl endopeptidase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
Identities = 324/706 (45%), Positives = 459/706 (65%)
Query: 26 VRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLL 85
V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE++
Sbjct: 1 VYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMT 60
Query: 86 RMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALK 145
+ +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT AL+
Sbjct: 61 ELYDYPKYSCNFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTVALR 120
Query: 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYN 205
YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG FYN
Sbjct: 121 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYN 180
Query: 206 QYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLL 265
Y +G +DGTET+ ++ QK+ YHVLGT+Q +DI EFP+ +E++D GRY+L
Sbjct: 181 AYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL 240
Query: 266 VSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKN 324
+S + L Y DLH P+G I+G +I + ++ + N G KT ++
Sbjct: 241 LSIREGCDPVNRLWYCDLHQEPNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRH 299
Query: 325 APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLN 384
+P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + LHDL
Sbjct: 300 SPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA 359
Query: 385 TGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIF 444
TG L +FPL++G + SG++K E+FY FTSFL PG IYHC++ + ++ +P +F
Sbjct: 360 TGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK-----EELEPRVF 414
Query: 445 RETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLP 504
RE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P + +S+ P
Sbjct: 415 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITP 474
Query: 505 TFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564
+S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + Y
Sbjct: 475 NYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGY 534
Query: 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSP 624
T PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + +++G
Sbjct: 535 TSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCS 594
Query: 625 NNKTHFHNLLSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683
+NK HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G
Sbjct: 595 DNKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQHLVGR 654
Query: 684 LPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + +
Sbjct: 655 SRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 700
|
|
| UNIPROTKB|P23687 PREP "Prolyl endopeptidase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1721 (610.9 bits), Expect = 3.1e-177, P = 3.1e-177
Identities = 324/711 (45%), Positives = 460/711 (64%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S + L Y DL +G I+G +I + ++ + N G KT
Sbjct: 246 YVLLSIREGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + LH
Sbjct: 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ + ++ +P
Sbjct: 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK-----EELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 RVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + +++
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYI 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 660 VGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
|
|
| UNIPROTKB|Q9XTA2 PREP "Prolyl endopeptidase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
Identities = 321/709 (45%), Positives = 457/709 (64%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G V LDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCNFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVCLDPNTLSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++ AY LS SGSDW T+ VD K+ +VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYVAYGLSASGSDWVTIKFMKVDGAKELADVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+ YHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S + L Y DLH P+G I+G +I + ++ + N G KT
Sbjct: 246 YVLLSIREGCDPVNRLWYCDLHQEPNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + LH
Sbjct: 305 NRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
D+ TG L +FPL++G + SG++K E+FY FTSFL PG IYHC++ + ++ +P
Sbjct: 365 DMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK-----EELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 RVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+ R +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + +++
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G +NK HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDNKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSPKFIATLQHL 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + +
Sbjct: 660 VGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
|
|
| UNIPROTKB|F1PHW5 PREP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1696 (602.1 bits), Expect = 1.4e-174, P = 1.4e-174
Identities = 320/697 (45%), Positives = 455/697 (65%)
Query: 35 DYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYS 94
DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE++ + +Y KYS
Sbjct: 7 DYHGHKIYDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPLRGLYKERMTELYDYPKYS 66
Query: 95 APQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGK 154
++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G+
Sbjct: 67 CHFKKGKRYFYFYNTGLQNQRVLYVQDSLDGEARVFLDPNLLSDDGTVALRGYAFSEDGE 126
Query: 155 HFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTA 214
+FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +
Sbjct: 127 YFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNSYPQQDGKS 186
Query: 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQG 274
DGTET+ ++ QK+ YHVLGT+Q +D+ EFP+ +E++D GRY+L+S
Sbjct: 187 DGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 246
Query: 275 SD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTI 333
+ L Y DL +G ISG +I + ++ + N G KT +++P +++ I
Sbjct: 247 VNRLWYCDLQQESNG-ISGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINI 305
Query: 334 NLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393
+ +P E WK L+PE E L+ VA V +N L++ Y+ +VR+++ LHDL TG L +FP
Sbjct: 306 DFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVRNILQLHDLATGALLKTFP 365
Query: 394 LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFE 453
L++G I SG++K E+FY FTSFL PG IYHC++ + ++ +P +FRE V +
Sbjct: 366 LEVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK-----EELEPRVFREVTVKGID 420
Query: 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMF 513
+ +QT Q+++ SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F
Sbjct: 421 ASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIF 480
Query: 514 LRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIM 573
+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI
Sbjct: 481 VRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQHAAEYLIKEGYTSPKRLTIN 540
Query: 574 GGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNL 633
GGSNGGLLV AC NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L
Sbjct: 541 GGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWL 600
Query: 634 LSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692
+ YSPLHN+++P ++TQYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL
Sbjct: 601 IKYSPLHNVRLPEADDTQYPSMLLLTADHDDRVVPLHSLKFIATLQYVVGRSRKQSNPLL 660
Query: 693 LRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
+ V+ AGHG G P K IEE++D++ F+ + L + +
Sbjct: 661 IHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLDIDW 697
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9XTA2 | PPCE_BOVIN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.4606 | 0.9509 | 0.9830 | yes | N/A |
| Q86AS5 | PPCE_DICDI | 3, ., 4, ., 2, 1, ., 2, 6 | 0.3259 | 0.9427 | 0.9105 | yes | N/A |
| Q9QUR6 | PPCE_MOUSE | 3, ., 4, ., 2, 1, ., 2, 6 | 0.4719 | 0.9509 | 0.9830 | yes | N/A |
| O70196 | PPCE_RAT | 3, ., 4, ., 2, 1, ., 2, 6 | 0.4733 | 0.9509 | 0.9830 | yes | N/A |
| P48147 | PPCE_HUMAN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.4705 | 0.9536 | 0.9859 | yes | N/A |
| P23687 | PPCE_PIG | 3, ., 4, ., 2, 1, ., 2, 6 | 0.4635 | 0.9536 | 0.9859 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 734 | |||
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 1e-142 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 1e-114 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 1e-104 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 2e-62 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 8e-54 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 1e-22 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 431 bits (1111), Expect = e-142
Identities = 227/695 (32%), Positives = 341/695 (49%), Gaps = 61/695 (8%)
Query: 43 DPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENN 102
DPYRWLE AE + QN + + + R A ++LL + +YE P +
Sbjct: 4 DPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGR 63
Query: 103 YFYFHN-----KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDG--TTALKLYAFSDNGKH 155
Y+ F +GL + L R+ EV +D + LS D AL + +G
Sbjct: 64 YYNFWQDALYPRGLYRRTTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTR 123
Query: 156 FAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTAD 215
Y LS GSD D++TG+ E + KFP ISW D G F ++Y
Sbjct: 124 LLYSLSIGGSDAGITREFDLETGEFVEE--EGFKFPGISWL-DDDGVFVSRY-----WRP 175
Query: 216 GTETTAHMG---QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT 272
+T + +++ L Q+ D+ V + G +++ G + ++S T
Sbjct: 176 KEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGT 235
Query: 273 QGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVT 332
G L L PD K+ ++ ++ + + L + T ++ GKV+
Sbjct: 236 SGKGLIKLGL---PD-KVGYEW--GKLVNTLRADWTFADVDYGLLYLLTDEDLELGKVIA 289
Query: 333 INLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392
IPE E ++L+ V +KL+ + NV ++++DL G+R+
Sbjct: 290 E------------FIPE-EEQSLEQVVTT-KDKLVAGTLDNVSGRLEVYDLK-GERIEEV 334
Query: 393 PLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPE 451
L G + S + +EVF FTSF P T+Y D + + RE V +
Sbjct: 335 ELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYR-------LDLFGGELEVIREQPV-Q 386
Query: 452 FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRC 511
F+ ++ +Q + SKDGTR+P +I+ + GA ++ NP ++Y YGG+ +S+ P FS SR
Sbjct: 387 FDADNYEVEQFFATSKDGTRIPYFIVRK-GAKKDE-NPTLLYAYGGFNISLTPRFSGSRK 444
Query: 512 MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYIT 571
++L G++ + NIRGGGE G +WH AG KQN FDDF A AE +I + T P+ +
Sbjct: 445 LWLER-GGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLG 503
Query: 572 IMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFH 631
I GGSNGGLLVGA L QRPEL+GAA+ V LDMLR++ T +E+G+P++
Sbjct: 504 IQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRA 563
Query: 632 NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPL 691
LL+YSP HN+K +YP TL+ T HDDRV P H+ KF A LQE P+
Sbjct: 564 FLLAYSPYHNLK---PGQKYPPTLITTSLHDDRVHPAHARKFAAKLQE-------VGAPV 613
Query: 692 LLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726
LLR E GHG P + E+ D+ FL+++LG
Sbjct: 614 LLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648
|
Length = 648 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 351 bits (902), Expect = e-114
Identities = 156/413 (37%), Positives = 231/413 (55%), Gaps = 21/413 (5%)
Query: 24 PKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPY-CQNHTDREAIKE 82
P R+DETV D+YHG + DPYRWLE E + +N + + Q RE IKE
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDDSPEVLAWVEAENKYTEDFLAQLKPLREKIKE 60
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTG---STEVFLDPNKLSKD 139
+L + NY+ SAP R+ Y+YF N G +N S+LY + G + EVFLDPN LS+D
Sbjct: 61 ELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDAGEGPGETEEVFLDPNTLSED 120
Query: 140 G--TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTH 197
G T AL YAFS +G+ AY LS SGSDW T+ +DV+TG+ P+VL+ VKF I W
Sbjct: 121 GDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPLPDVLEGVKFSGIVWAP 180
Query: 198 DHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV 257
D+KGFFY++Y + + ++ QK++ H LGT Q +D+ V E P+ L +E
Sbjct: 181 DNKGFFYSRY------DEPERGSTNLNQKVWRHRLGTPQSQDVLVFEEPDEPFWYLGAER 234
Query: 258 TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPEL 317
+D G+YL +S+++ T ++L+ DL D PL+ V+P D + + + G
Sbjct: 235 SDDGKYLFISSASGTDVNELYVLDLAQEKD------GPLRKVVPRFDGVYYYVEHEGDTF 288
Query: 318 IVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-DENRTLDVVAAVANNKLIVHYIQNVRS 376
T AP ++V ++LN+P +WK +I E E+ L+ + V N L++ Y ++ S
Sbjct: 289 YFLTNDGAPNFRLVRVDLNDPSPADWKDVIVEHREDVLLEEI-TVFGNYLVLSYRRDALS 347
Query: 377 VMDLHDLNTGKRL-HSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCN 428
+ + DL G L F +G ++ SG +E+ Y F+SFL PGTIY +
Sbjct: 348 RLQVFDLGGGGVLFEEFLPGVGSVSSASGEYDDDELRYSFSSFLTPGTIYDLD 400
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 333 bits (857), Expect = e-104
Identities = 197/726 (27%), Positives = 342/726 (47%), Gaps = 66/726 (9%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHT-DREAI 80
P P + K +HG D Y WL + + ++ +++ N Y + + +
Sbjct: 4 PLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAE--NAYTEAVMAHLQPL 61
Query: 81 KEQLLRMANY---EKYSAPQRQENNYFYFH--NKGLQNHSILYVQRNLTGSTE-VFLDPN 134
++++ E + ++ Y Y+ +G + + I Q + G E V LD N
Sbjct: 62 QKKIFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKE-YPIYCRQPDEGGEGEEVLLDVN 120
Query: 135 KLSKDGT-TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSI 193
K ++ +L + S + AY + G + TL KD+ TG++ P+ + N S
Sbjct: 121 KEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNT-SGSF 179
Query: 194 SWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGL 253
+W D K FY H K++ H LGT D V E + R L
Sbjct: 180 AWAADGKTLFY-----------TRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFF-L 227
Query: 254 HSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANN 313
+ Y+++S + S++ D P+ + K V+P + + +
Sbjct: 228 SVGRSRSEAYIVIS-LGSHITSEVRLLDA-DDPEAE------PKVVLPRENGVEYSVEHG 279
Query: 314 GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373
G + + + K+V ++ + NW+ LIP E+ L+ V A++ L++ Q
Sbjct: 280 GDRFYILSNADGKNFKLVRAPVS-ADKSNWRELIPHREDVRLEGVDLFADH-LVLLERQE 337
Query: 374 VRSVMDLHDLNTGK-RLHSFPLDLGQITHISGRRKYNE--VFYGFTSFLQPGTIYHCNIP 430
+ + D TG+ R +F D +SG +++ + Y ++S P T++ ++
Sbjct: 338 GLPRVVVRDRKTGEERGIAFD-DEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMA 396
Query: 431 ENITDQDDFKPTIFRETIVP-EFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNP 489
+ T+ ++ VP F+P + +++++ + DG +VP+ +++R + P
Sbjct: 397 TG-------ERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAP 449
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFL-RHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNC 548
+++YGYG YG+S+ P+FSI+R L R F +YAI ++RGGGELG W+ G+LL K+N
Sbjct: 450 LLLYGYGAYGISMDPSFSIARLSLLDRGF--VYAIAHVRGGGELGRAWYEDGKLLNKKNT 507
Query: 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD---- 604
F DF AAA +++ + YT P I +GGS GG+L+GA N P+L+ + V +D
Sbjct: 508 FTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTT 567
Query: 605 MLRFN-KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDD 663
ML + T+ + E+G+P + ++ + SYSP N++ P YPA LV TG +D
Sbjct: 568 MLDPSLPLTVTEW--DEWGNPLDPEYYDYIKSYSPYDNVEAQP----YPAILVTTGLNDP 621
Query: 664 RVPPLHSYKFIATLQE-KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722
RV K++A L+E K NPLLL+ DAGHG + + +EE+ Y FL+
Sbjct: 622 RVQYWEPAKWVAKLRELKTDG-----NPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLL 676
Query: 723 KSLGLK 728
K G
Sbjct: 677 KLAGTD 682
|
Length = 682 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 2e-62
Identities = 88/216 (40%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 513 FLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITI 572
L + A+ N RG G G WH+AG+ QN FDDF AAAEY+I + Y P + I
Sbjct: 9 LLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYVDPDRLAI 68
Query: 573 MGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE-SEFGSP-NNKTHF 630
GGS GG L GA LNQRP+L+ AA+ +V +D L + T + E+G+P +N+ +
Sbjct: 69 WGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGY 128
Query: 631 HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690
L YSP N+K YP L++ G HDDRVPP + K +A LQ K
Sbjct: 129 RYLSPYSPYDNVK------AYPPLLLIHGLHDDRVPPAEALKLVAALQAK-------GKN 175
Query: 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726
+LL + D GHG G P K EE FL+K LG
Sbjct: 176 VLLLIFPDEGHGGGKPRNK-REEYARELAFLLKVLG 210
|
Length = 212 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (501), Expect = 8e-54
Identities = 156/567 (27%), Positives = 267/567 (47%), Gaps = 62/567 (10%)
Query: 170 LHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY 229
+ ++++TG YPE+L NV+ PS W +D F+Y + + +++
Sbjct: 155 IRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVR----------KHPVTLLPYQVWR 203
Query: 230 HVLGTEQDKDIPVVEFPNGR-SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG 288
H +GT +D V E + + LH T Y+++ ++ T L L D
Sbjct: 204 HTIGTPASQDELVYEEKDDTFYVSLHK--TTSKHYVVIHLASATTSEVL-------LLDA 254
Query: 289 KISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348
+++ P +P H + + +++ ++ + + + E+ W+ LIP
Sbjct: 255 ELADAEPF-VFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEELIP 311
Query: 349 EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH---SFPLDLGQITHISGR 405
EN L+ + L+V Q R + L +N R +F D +T I+
Sbjct: 312 PRENIMLEGFTLFTD-WLVVEERQ--RGLTSLRQINRKTREVIGIAFD-DPAYVTWIA-- 365
Query: 406 RKYN------EVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQT 459
YN + YG++S P T++ D D + + ++T VP F+ +++
Sbjct: 366 --YNPEPETSRLRYGYSSMTTPDTLFE-------LDMDTGERRVLKQTEVPGFDAANYRS 416
Query: 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL-RHFN 518
+ ++ ++DG VP+ +++ R NP+++YGYG YG S+ FS SR L R F
Sbjct: 417 EHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGF- 475
Query: 519 GIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNG 578
+YAI ++RGGGELG+ W+ G+ LKK+N F+D+ A + ++ Y P MGGS G
Sbjct: 476 -VYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAG 534
Query: 579 GLLVGACLNQRPELYGAALILVGALDMLRF---NKFTIAYYSESEFGSPNNKTHFHNLLS 635
G+L+G +NQRPEL+ + V +D++ + E+G+P + ++ + S
Sbjct: 535 GMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKS 594
Query: 636 YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695
YSP N+ YP LV TG HD +V K++A L+E L + LLL
Sbjct: 595 YSPYDNVTA----QAYPHLLVTTGLHDSQVQYWEPAKWVAKLRE----LKTDDHLLLLCT 646
Query: 696 EQDAGHGQGTPLMKSIEEMTDIYVFLM 722
+ D+GHG + KS E + Y FL+
Sbjct: 647 DMDSGHGGKSGRFKSYEGVAMEYAFLI 673
|
Length = 686 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 80/438 (18%), Positives = 151/438 (34%), Gaps = 65/438 (14%)
Query: 280 FDLHSLPDGKIS-GKFPLKTVIPGMDHHHEIIANNGPELIVKTTKN--------APKGKV 330
+ DG++ P + + + +I NG + T GK
Sbjct: 171 VSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL-TPGEGSISKLAFDADGKS 229
Query: 331 VTINLNNPCEKNW----KTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTG 386
+ + L ++ L+ + E +D + ++ ++ L + T
Sbjct: 230 IAL-LGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATD 288
Query: 387 KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFL--------------QPGTIYHCNIPEN 432
S + + G + G F +P IY
Sbjct: 289 GGGSSPLFRVDDLGG--GVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYL------ 340
Query: 433 ITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVII 492
++ K T + + + L + + V ++S DG + ++ G ++ P+I+
Sbjct: 341 YDRGEEAKLTSSNNSGLKKV--KLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIV 398
Query: 493 YGYGG----YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNC 548
Y +GG G S P + + + + PN RG G ++ +A R
Sbjct: 399 YIHGGPSAQVGYSFNPEIQV---LASAGYAVLA--PNYRGSTGYGREFADAIRGDWGGVD 453
Query: 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608
+D AA + ++ P+ I I GGS GG + + P A + G +L F
Sbjct: 454 LEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVAGGVDWLLYF 513
Query: 609 NKFTIAY---YSESEFGSPNNKTHFHNLLSYSPL---HNIKVPPNNTQYPATLVLTGDHD 662
+ T E+ G P ++ + SP+ NIK P L++ G+ D
Sbjct: 514 GESTEGLRFDPEENGGGPPEDREKY---EDRSPIFYADNIKTP--------LLLIHGEED 562
Query: 663 DRVPPLHSYKFIATLQEK 680
DRVP + + + L+ K
Sbjct: 563 DRVPIEQAEQLVDALKRK 580
|
Length = 620 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 734 | |||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| KOG2237|consensus | 712 | 100.0 | ||
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 100.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| KOG2281|consensus | 867 | 100.0 | ||
| KOG2100|consensus | 755 | 100.0 | ||
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 100.0 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.88 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.86 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.86 | |
| PRK10566 | 249 | esterase; Provisional | 99.86 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.85 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.85 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.85 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.82 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.82 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.82 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.8 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.79 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.79 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.79 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.79 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.79 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.79 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.78 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.77 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.76 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.75 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.75 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.75 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG1552|consensus | 258 | 99.72 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.72 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.71 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.7 | |
| KOG1455|consensus | 313 | 99.69 | ||
| KOG1515|consensus | 336 | 99.68 | ||
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.68 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.68 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.62 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.61 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.61 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.61 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.61 | |
| KOG4391|consensus | 300 | 99.61 | ||
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.59 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.56 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.56 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.56 | |
| PLN02511 | 388 | hydrolase | 99.55 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.54 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.54 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.53 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.53 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.52 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.51 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.5 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.5 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.5 | |
| PLN00021 | 313 | chlorophyllase | 99.49 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.49 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.49 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.47 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.47 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.47 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.46 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.45 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.45 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.44 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.44 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.43 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.43 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.43 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.43 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.42 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.4 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.39 | |
| KOG0293|consensus | 519 | 99.39 | ||
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.38 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.37 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.37 | |
| KOG4178|consensus | 322 | 99.37 | ||
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.36 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.35 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.35 | |
| KOG0271|consensus | 480 | 99.34 | ||
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.34 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.34 | |
| KOG4667|consensus | 269 | 99.33 | ||
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.33 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.33 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.32 | |
| PLN02578 | 354 | hydrolase | 99.31 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.31 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.31 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.3 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.29 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.28 | |
| KOG0279|consensus | 315 | 99.28 | ||
| KOG1838|consensus | 409 | 99.28 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.25 | |
| KOG0318|consensus | 603 | 99.23 | ||
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.2 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.19 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.19 | |
| KOG3101|consensus | 283 | 99.19 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.19 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.18 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.17 | |
| KOG3043|consensus | 242 | 99.16 | ||
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.15 | |
| KOG0293|consensus | 519 | 99.14 | ||
| KOG4627|consensus | 270 | 99.14 | ||
| KOG0271|consensus | 480 | 99.12 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.09 | |
| KOG0266|consensus | 456 | 99.07 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.07 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.07 | |
| KOG1454|consensus | 326 | 99.07 | ||
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.06 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 99.06 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.02 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.02 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.01 | |
| KOG4409|consensus | 365 | 99.01 | ||
| COG0627 | 316 | Predicted esterase [General function prediction on | 99.01 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.99 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.98 | |
| KOG0272|consensus | 459 | 98.98 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.98 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 98.96 | |
| KOG0266|consensus | 456 | 98.94 | ||
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.94 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.91 | |
| KOG0272|consensus | 459 | 98.91 | ||
| KOG0279|consensus | 315 | 98.9 | ||
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.89 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.87 | |
| KOG0315|consensus | 311 | 98.86 | ||
| PTZ00421 | 493 | coronin; Provisional | 98.85 | |
| KOG0286|consensus | 343 | 98.85 | ||
| KOG0305|consensus | 484 | 98.85 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.84 | |
| KOG2624|consensus | 403 | 98.81 | ||
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.81 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.79 | |
| KOG0291|consensus | 893 | 98.79 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.79 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.77 | |
| KOG2984|consensus | 277 | 98.77 | ||
| PTZ00420 | 568 | coronin; Provisional | 98.75 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.73 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.72 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.7 | |
| KOG0275|consensus | 508 | 98.69 | ||
| KOG1407|consensus | 313 | 98.68 | ||
| KOG2112|consensus | 206 | 98.68 | ||
| PTZ00420 | 568 | coronin; Provisional | 98.68 | |
| KOG0318|consensus | 603 | 98.67 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.67 | |
| PTZ00421 | 493 | coronin; Provisional | 98.67 | |
| KOG0973|consensus | 942 | 98.66 | ||
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.66 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.65 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.65 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.64 | |
| KOG2096|consensus | 420 | 98.63 | ||
| PRK10115 | 686 | protease 2; Provisional | 98.62 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.62 | |
| KOG1446|consensus | 311 | 98.61 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.58 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.58 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.57 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.56 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.55 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.55 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.54 | |
| KOG0315|consensus | 311 | 98.54 | ||
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.54 | |
| KOG0263|consensus | 707 | 98.54 | ||
| KOG0286|consensus | 343 | 98.54 | ||
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.53 | |
| KOG0296|consensus | 399 | 98.53 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.52 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.51 | |
| KOG0291|consensus | 893 | 98.5 | ||
| KOG2314|consensus | 698 | 98.5 | ||
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.5 | |
| KOG2055|consensus | 514 | 98.47 | ||
| KOG2055|consensus | 514 | 98.46 | ||
| KOG0772|consensus | 641 | 98.44 | ||
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.41 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.41 | |
| KOG3847|consensus | 399 | 98.41 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.41 | |
| KOG0772|consensus | 641 | 98.41 | ||
| KOG1553|consensus | 517 | 98.4 | ||
| KOG0263|consensus | 707 | 98.4 | ||
| KOG2564|consensus | 343 | 98.39 | ||
| KOG0273|consensus | 524 | 98.39 | ||
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.39 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.39 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.38 | |
| KOG1446|consensus | 311 | 98.35 | ||
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.33 | |
| KOG2139|consensus | 445 | 98.33 | ||
| KOG0310|consensus | 487 | 98.31 | ||
| KOG0265|consensus | 338 | 98.3 | ||
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.3 | |
| KOG0275|consensus | 508 | 98.3 | ||
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.29 | |
| KOG0283|consensus | 712 | 98.28 | ||
| PRK04940 | 180 | hypothetical protein; Provisional | 98.28 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.28 | |
| KOG2382|consensus | 315 | 98.28 | ||
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.26 | |
| KOG0296|consensus | 399 | 98.24 | ||
| KOG1407|consensus | 313 | 98.2 | ||
| KOG0973|consensus | 942 | 98.14 | ||
| KOG0305|consensus | 484 | 98.13 | ||
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.13 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.09 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.07 | |
| KOG0316|consensus | 307 | 98.07 | ||
| KOG0645|consensus | 312 | 98.06 | ||
| KOG4497|consensus | 447 | 98.03 | ||
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.03 | |
| KOG0295|consensus | 406 | 98.03 | ||
| KOG0295|consensus | 406 | 98.02 | ||
| KOG0282|consensus | 503 | 98.02 | ||
| KOG1273|consensus | 405 | 97.99 | ||
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.98 | |
| KOG0643|consensus | 327 | 97.97 | ||
| KOG0306|consensus | 888 | 97.96 | ||
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.95 | |
| KOG1516|consensus | 545 | 97.95 | ||
| KOG0285|consensus | 460 | 97.93 | ||
| KOG1274|consensus | 933 | 97.91 | ||
| KOG0650|consensus | 733 | 97.9 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.9 | |
| KOG2551|consensus | 230 | 97.9 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.89 | |
| KOG0316|consensus | 307 | 97.89 | ||
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 97.89 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.89 | |
| KOG0273|consensus | 524 | 97.86 | ||
| KOG0289|consensus | 506 | 97.86 | ||
| KOG1274|consensus | 933 | 97.85 | ||
| KOG4497|consensus | 447 | 97.84 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.8 | |
| KOG2048|consensus | 691 | 97.8 | ||
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.79 | |
| KOG1273|consensus | 405 | 97.78 | ||
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.77 | |
| KOG0282|consensus | 503 | 97.75 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.74 | |
| KOG0265|consensus | 338 | 97.73 | ||
| KOG1445|consensus | 1012 | 97.72 | ||
| KOG3253|consensus | 784 | 97.71 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.7 | |
| KOG0284|consensus | 464 | 97.7 | ||
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.7 | |
| KOG0640|consensus | 430 | 97.7 | ||
| KOG0284|consensus | 464 | 97.68 | ||
| KOG2315|consensus | 566 | 97.67 | ||
| KOG0645|consensus | 312 | 97.66 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.66 | |
| KOG0643|consensus | 327 | 97.65 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.65 | |
| KOG0294|consensus | 362 | 97.64 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.64 | |
| KOG0289|consensus | 506 | 97.64 | ||
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 97.63 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.62 | |
| KOG0278|consensus | 334 | 97.61 | ||
| KOG2048|consensus | 691 | 97.61 | ||
| KOG0307|consensus | 1049 | 97.6 | ||
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 97.59 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.59 | |
| KOG0771|consensus | 398 | 97.58 | ||
| KOG1009|consensus | 434 | 97.56 | ||
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.55 | |
| KOG2919|consensus | 406 | 97.55 | ||
| KOG0292|consensus | 1202 | 97.5 | ||
| KOG1063|consensus | 764 | 97.48 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.48 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.47 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.47 | |
| KOG4840|consensus | 299 | 97.45 | ||
| KOG0639|consensus | 705 | 97.45 | ||
| KOG0283|consensus | 712 | 97.44 | ||
| KOG2314|consensus | 698 | 97.43 | ||
| KOG0319|consensus | 775 | 97.43 | ||
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.41 | |
| KOG0299|consensus | 479 | 97.41 | ||
| KOG0278|consensus | 334 | 97.38 | ||
| KOG1524|consensus | 737 | 97.38 | ||
| KOG0641|consensus | 350 | 97.36 | ||
| KOG2106|consensus | 626 | 97.35 | ||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.34 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.33 | |
| KOG1445|consensus | 1012 | 97.32 | ||
| KOG2139|consensus | 445 | 97.31 | ||
| KOG1036|consensus | 323 | 97.31 | ||
| KOG4389|consensus | 601 | 97.3 | ||
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.28 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.24 | |
| KOG2315|consensus | 566 | 97.21 | ||
| KOG0313|consensus | 423 | 97.19 | ||
| KOG0646|consensus | 476 | 97.18 | ||
| KOG1538|consensus | 1081 | 97.17 | ||
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.16 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.15 | |
| KOG4283|consensus | 397 | 97.14 | ||
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 97.13 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.13 | |
| KOG0302|consensus | 440 | 97.12 | ||
| KOG0319|consensus | 775 | 97.02 | ||
| KOG0268|consensus | 433 | 96.97 | ||
| KOG0639|consensus | 705 | 96.97 | ||
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 96.97 | |
| KOG0313|consensus | 423 | 96.96 | ||
| KOG0277|consensus | 311 | 96.96 | ||
| KOG0303|consensus | 472 | 96.96 | ||
| KOG2394|consensus | 636 | 96.91 | ||
| KOG0310|consensus | 487 | 96.89 | ||
| KOG2183|consensus | 492 | 96.89 | ||
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.88 | |
| KOG0640|consensus | 430 | 96.87 | ||
| KOG0647|consensus | 347 | 96.85 | ||
| KOG0306|consensus | 888 | 96.82 | ||
| KOG1009|consensus | 434 | 96.81 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.79 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 96.79 | |
| KOG0264|consensus | 422 | 96.77 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.77 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.74 | |
| KOG2110|consensus | 391 | 96.68 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.65 | |
| KOG1539|consensus | 910 | 96.64 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.63 | |
| KOG0302|consensus | 440 | 96.62 | ||
| KOG1524|consensus | 737 | 96.6 | ||
| KOG0641|consensus | 350 | 96.58 | ||
| KOG3967|consensus | 297 | 96.57 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.57 | |
| KOG0303|consensus | 472 | 96.57 | ||
| KOG2110|consensus | 391 | 96.56 | ||
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 96.55 | |
| KOG0646|consensus | 476 | 96.49 | ||
| KOG4499|consensus | 310 | 96.48 | ||
| KOG0771|consensus | 398 | 96.48 | ||
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 96.48 | |
| KOG2919|consensus | 406 | 96.45 | ||
| KOG4378|consensus | 673 | 96.45 | ||
| KOG0307|consensus | 1049 | 96.41 | ||
| KOG0264|consensus | 422 | 96.37 | ||
| KOG0277|consensus | 311 | 96.37 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.3 | |
| KOG2931|consensus | 326 | 96.3 | ||
| KOG2394|consensus | 636 | 96.25 | ||
| KOG0274|consensus | 537 | 96.25 | ||
| KOG0288|consensus | 459 | 96.21 | ||
| KOG1539|consensus | 910 | 96.19 | ||
| KOG0281|consensus | 499 | 96.17 | ||
| KOG0288|consensus | 459 | 96.08 | ||
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.07 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.07 | |
| KOG0308|consensus | 735 | 96.05 | ||
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 96.05 | |
| KOG2237|consensus | 712 | 96.0 | ||
| KOG0299|consensus | 479 | 95.96 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.96 | |
| KOG2096|consensus | 420 | 95.89 | ||
| KOG4378|consensus | 673 | 95.85 | ||
| KOG1282|consensus | 454 | 95.83 | ||
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 95.83 | |
| KOG3975|consensus | 301 | 95.78 | ||
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 95.75 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.75 | |
| PLN02209 | 437 | serine carboxypeptidase | 95.67 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 95.65 | |
| KOG0267|consensus | 825 | 95.64 | ||
| KOG4283|consensus | 397 | 95.61 | ||
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 95.53 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 95.51 | |
| KOG0276|consensus | 794 | 95.5 | ||
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.49 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 95.47 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.47 | |
| KOG4328|consensus | 498 | 95.42 | ||
| KOG0269|consensus | 839 | 95.42 | ||
| KOG0285|consensus | 460 | 95.4 | ||
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.38 | |
| KOG4388|consensus | 880 | 95.25 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.24 | |
| KOG2182|consensus | 514 | 95.13 | ||
| KOG2565|consensus | 469 | 95.11 | ||
| KOG1920|consensus | 1265 | 95.09 | ||
| KOG1408|consensus | 1080 | 95.02 | ||
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 95.01 | |
| KOG1007|consensus | 370 | 95.01 | ||
| KOG1408|consensus | 1080 | 94.86 | ||
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 94.82 | |
| KOG0290|consensus | 364 | 94.82 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.81 | |
| KOG0281|consensus | 499 | 94.53 | ||
| KOG2321|consensus | 703 | 94.33 | ||
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 94.17 | |
| KOG1034|consensus | 385 | 94.05 | ||
| KOG1523|consensus | 361 | 94.05 | ||
| KOG0290|consensus | 364 | 93.86 | ||
| KOG2541|consensus | 296 | 93.78 | ||
| KOG0647|consensus | 347 | 93.7 | ||
| KOG0300|consensus | 481 | 93.5 | ||
| KOG1523|consensus | 361 | 93.39 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 93.38 | |
| KOG0321|consensus | 720 | 93.35 | ||
| PLN02606 | 306 | palmitoyl-protein thioesterase | 93.34 | |
| KOG2100|consensus | 755 | 93.29 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.0 | |
| KOG1920|consensus | 1265 | 92.87 | ||
| KOG0269|consensus | 839 | 92.85 | ||
| KOG1538|consensus | 1081 | 92.84 | ||
| KOG0292|consensus | 1202 | 92.75 | ||
| KOG0649|consensus | 325 | 92.52 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 92.49 | |
| KOG0276|consensus | 794 | 92.46 | ||
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 92.4 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 92.4 | |
| KOG0649|consensus | 325 | 92.31 | ||
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 92.16 | |
| KOG0268|consensus | 433 | 92.03 | ||
| KOG4328|consensus | 498 | 92.0 | ||
| KOG1007|consensus | 370 | 91.98 | ||
| KOG2111|consensus | 346 | 91.81 | ||
| KOG4227|consensus | 609 | 91.71 | ||
| KOG0274|consensus | 537 | 91.69 | ||
| KOG4532|consensus | 344 | 91.61 | ||
| KOG1963|consensus | 792 | 91.6 | ||
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 91.54 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 91.43 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 91.35 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 91.29 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.16 | |
| KOG0650|consensus | 733 | 91.12 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 91.07 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.94 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 90.92 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 90.87 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 90.87 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 90.81 | |
| KOG2321|consensus | 703 | 90.72 | ||
| KOG1332|consensus | 299 | 90.59 | ||
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 90.19 | |
| KOG1063|consensus | 764 | 90.08 | ||
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 90.06 | |
| KOG3914|consensus | 390 | 89.88 | ||
| KOG1963|consensus | 792 | 89.72 | ||
| KOG0294|consensus | 362 | 89.62 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 89.51 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 89.36 | |
| KOG0270|consensus | 463 | 89.28 | ||
| KOG2041|consensus | 1189 | 89.19 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 88.97 | |
| KOG0267|consensus | 825 | 88.79 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 88.67 | |
| KOG1034|consensus | 385 | 88.32 | ||
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 87.96 | |
| KOG1332|consensus | 299 | 87.84 | ||
| KOG3914|consensus | 390 | 87.55 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 87.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.08 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 86.4 | |
| KOG0321|consensus | 720 | 86.02 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 85.99 | |
| KOG1230|consensus | 521 | 85.77 | ||
| KOG0300|consensus | 481 | 85.54 | ||
| KOG3724|consensus | 973 | 85.49 | ||
| KOG0308|consensus | 735 | 85.22 | ||
| PLN02454 | 414 | triacylglycerol lipase | 85.14 | |
| KOG4532|consensus | 344 | 85.04 | ||
| KOG0270|consensus | 463 | 84.9 | ||
| KOG1036|consensus | 323 | 84.62 |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-106 Score=839.26 Aligned_cols=664 Identities=28% Similarity=0.475 Sum_probs=599.5
Q ss_pred CCCCCCCccCCceeccccCceecCCCcccCCCC--ChhHHHHHHHhhhhhHHhhcCC-chHHHHHHHHHHhccCCccCCc
Q psy4818 20 TGPYPKVRKDETVEDDYHGMKIKDPYRWLEYPH--CAETQIFNFMQNNISNPYCQNH-TDREAIKEQLLRMANYEKYSAP 96 (734)
Q Consensus 20 ~~~~P~~~~~~~~~~~~hg~~~~D~y~wled~~--~~~~~~~~~~q~~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p 96 (734)
.+.||.|+|.|+. .+.||+++.|+|+||+|.+ +|++++||++||+|+++.++++ ++++.|++||+.+++.++.|+|
T Consensus 3 ~p~pP~a~k~~~~-~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp 81 (682)
T COG1770 3 LPLPPIAKKVPTT-RTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVP 81 (682)
T ss_pred CCCCCCcccccee-eeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCc
Confidence 3578999999965 8999999999999999998 9999999999999999999999 9999999999999999999999
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCC-eEEEeCCCCcCCC-CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEE
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGS-TEVFLDPNKLSKD-GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKD 174 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~l~d~~~~~~~-~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~d 174 (734)
..+|+|.||.+...++++++.||....++. +++|||+|+++++ .++.++.+++|||+++|||+.|..|++.++|+++|
T Consensus 82 ~~~~~~~Yy~r~~~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kd 161 (682)
T COG1770 82 YRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKD 161 (682)
T ss_pred cccCCeeEEEEecCCCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEe
Confidence 999999999999998999988886655555 9999999999988 68999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEE
Q psy4818 175 VDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLH 254 (734)
Q Consensus 175 l~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~ 254 (734)
+++|+.+.+.+.++. .+++|.+|+++|+|++.++ ..++.+|++|.++++..++.+||++++ +.|+.+
T Consensus 162 L~tg~~~~d~i~~~~-~~~~Wa~d~~~lfYt~~d~-----------~~rp~kv~~h~~gt~~~~d~lvyeE~d-~~f~~~ 228 (682)
T COG1770 162 LATGEELPDEITNTS-GSFAWAADGKTLFYTRLDE-----------NHRPDKVWRHRLGTPGSSDELVYEEKD-DRFFLS 228 (682)
T ss_pred cccccccchhhcccc-cceEEecCCCeEEEEEEcC-----------CCCcceEEEEecCCCCCcceEEEEcCC-CcEEEE
Confidence 999999888887754 7899999999999999876 358899999999998888999999976 459999
Q ss_pred EEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEE
Q psy4818 255 SEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTI 333 (734)
Q Consensus 255 ~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~ 333 (734)
+.-|.+.++|++..++. ..+++++++.+. +. ..+ .++..+..+..+ ..+.|+.+|+.+|.++.+++|+..
T Consensus 229 v~~s~s~~yi~i~~~~~-~tsE~~ll~a~~-p~------~~p-~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~a 299 (682)
T COG1770 229 VGRSRSEAYIVISLGSH-ITSEVRLLDADD-PE------AEP-KVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRA 299 (682)
T ss_pred eeeccCCceEEEEcCCC-cceeEEEEecCC-CC------Cce-EEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEc
Confidence 99999999999987553 348999999987 22 222 333344445554 778899999999999999999999
Q ss_pred ecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC--CceE-EeeccCcccce
Q psy4818 334 NLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD--LGQI-THISGRRKYNE 410 (734)
Q Consensus 334 d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~--~g~v-~~~~~~~d~~~ 410 (734)
.+ ...+++|+.++++.+...++++..+. +++++..++++.++|++++..+|++ ..|.++ .... .+....++.+.
T Consensus 300 p~-~~~~~~w~~~I~h~~~~~l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~~~~-~~i~f~~~ay~~~l~~~~e~~s~~ 376 (682)
T COG1770 300 PV-SADKSNWRELIPHREDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTGEE-RGIAFDDEAYSAGLSGNPEFDSDR 376 (682)
T ss_pred cC-CCChhcCeeeeccCCCceeeeeeeec-cEEEEEecccCCceEEEEecCCCce-eeEEecchhhhccccCCCCCCCcc
Confidence 88 55566899999999888999999888 8999999999999999999988876 446655 2222 13344567889
Q ss_pred EEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCC-CCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCc
Q psy4818 411 VFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNP 489 (734)
Q Consensus 411 l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P 489 (734)
+.+.++|+++|.++|.+|+ +++ +++++++.++++ ++++.|.++++|.++.||++||++|++.++++.+++.|
T Consensus 377 lR~~ysS~ttP~~~~~~dm-----~t~--er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p 449 (682)
T COG1770 377 LRYSYSSMTTPATLFDYDM-----ATG--ERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAP 449 (682)
T ss_pred EEEEeecccccceeEEeec-----cCC--cEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCCCCCCc
Confidence 9999999999999999999 788 899999999886 99999999999999999999999999999988899999
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 569 (734)
++||+||+||.++.+.|+..++.+|.+ ||+++++|+||||+.|+.|+++|+...|+|+|+||++|+++|++++++++++
T Consensus 450 ~lLygYGaYG~s~~p~Fs~~~lSLlDR-GfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~ 528 (682)
T COG1770 450 LLLYGYGAYGISMDPSFSIARLSLLDR-GFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDR 528 (682)
T ss_pred EEEEEeccccccCCcCcccceeeeecC-ceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccc
Confidence 999999999999999999988898875 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc-----ccCcccccccCCCCCHHHHHHHHhCCccCCCCC
Q psy4818 570 ITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF-----TIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 644 (734)
Q Consensus 570 i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~ 644 (734)
|+++|+|+||+|++++++++|++|+++|+.+||+|+++++.. +.. .| .|||||.+++.++++++||||.||.+
T Consensus 529 i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~-E~-~EWGNP~d~e~y~yikSYSPYdNV~a 606 (682)
T COG1770 529 IVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVT-EW-DEWGNPLDPEYYDYIKSYSPYDNVEA 606 (682)
T ss_pred eEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCcc-ch-hhhCCcCCHHHHHHHhhcCchhcccc
Confidence 999999999999999999999999999999999999987632 222 23 79999999999999999999999998
Q ss_pred CCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 645 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 645 p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
..||++|++.|.+|+||.+||+.|++++|++. ++++.|++|.+.+++||++.+.+.++++..+..++|+.+.
T Consensus 607 ----~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~----~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~~ 678 (682)
T COG1770 607 ----QPYPAILVTTGLNDPRVQYWEPAKWVAKLREL----KTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKL 678 (682)
T ss_pred ----CCCCceEEEccccCCccccchHHHHHHHHhhc----ccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999998 7778899999999999999999999999999999999988
Q ss_pred cCC
Q psy4818 725 LGL 727 (734)
Q Consensus 725 l~~ 727 (734)
++.
T Consensus 679 ~~~ 681 (682)
T COG1770 679 AGT 681 (682)
T ss_pred ccC
Confidence 764
|
|
| >KOG2237|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-101 Score=793.09 Aligned_cols=703 Identities=38% Similarity=0.657 Sum_probs=588.0
Q ss_pred CCCCCCCccCCceeccccCceecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcEEe
Q psy4818 20 TGPYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQ 99 (734)
Q Consensus 20 ~~~~P~~~~~~~~~~~~hg~~~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 99 (734)
++.||+++|+.++++.+||+++.|||+||||+++.++.+||++||.||+++|+..+..++|+.+|+.++.++++++|.+.
T Consensus 3 ~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d~~~~~~fv~~en~~t~~vl~~~e~~~kl~~em~~~i~ye~~~~p~r~ 82 (712)
T KOG2237|consen 3 PLQYPVARKDESVAEDFHGVTVEDPYRWLEDPDDTEMKEFVEAENKYTDAVLEDTETKEKLFSEMTKRIDYEIITPPLRW 82 (712)
T ss_pred CCCCCCcccccchhhhcCCceecCcchhhcCCcHHHHHHHHHHhhhhhHHHHhccHHHHHHHHHhhhccCccccCCcccc
Confidence 35789999988888999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC
Q psy4818 100 ENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179 (734)
Q Consensus 100 g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~ 179 (734)
|+|+||.++.+++ |+.+|+++....++++++|++.++.+++..+..-++|-|++|++|..+..|.++..|.....+.|+
T Consensus 83 G~~yyY~~n~~lk-q~vl~~rr~~~~e~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~ 161 (712)
T KOG2237|consen 83 GPWYYYFYNTGLK-QYVLYCRRLLEKEEEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGK 161 (712)
T ss_pred CCEEEEEEcCCce-ehhHHHHhhhhcccceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCC
Confidence 9999999999988 666666655567777888888777777666666666666666666666666666666655555555
Q ss_pred cccccccccccCeeEEEcCCcEEEEEEEecCCCC--CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEE
Q psy4818 180 DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGT--ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV 257 (734)
Q Consensus 180 ~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 257 (734)
.+.+...+..++.++|.+|++.++|.+-...++. -.++.+..+++++||+|.+|+.+.+|++++++++++.+......
T Consensus 162 e~~~~v~~~~~~~~~~~~~~~g~~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~ 241 (712)
T KOG2237|consen 162 ELFTVVIDVKFSGPVWTHDGKGVSYLAWAKQDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISET 241 (712)
T ss_pred ccceeeeeeccCCceeeccCCceEeeeecccCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCCCeEEEEEEE
Confidence 4444455555566777777777777665442222 13344457899999999999999999999999999877776677
Q ss_pred ecCCcEEEEEEecCCCC-ceEEEEeCCCCCCCcccC-CCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 258 TDCGRYLLVSTSNNTQG-SDLHYFDLHSLPDGKISG-KFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 258 SpDG~~l~~~~~~~~~~-~~i~~~d~~~~~~~~l~~-~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
+.+|++.+.+.++.++. +.+|++|+.. +...+.. -.++..++..+...+.++..++..++|.+|.+++++.+.++++
T Consensus 242 kD~~~~~i~si~~t~s~~~~vf~~d~~~-~~~gl~~~~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~ 320 (712)
T KOG2237|consen 242 KDSGFYTINSISETCSPVNKVFLCDLSS-PSDGLELLILPRVKGVDCFVEHYDFITNEGTEFYFLTNKDAPNYYLLRIDV 320 (712)
T ss_pred ecCceEEEEEeeccCCccceEEEEeccc-ccCCcchheeeccchhhhhhhhhhheeccCcceeeeccCCCCceeEEeeec
Confidence 77777777666665553 7999999987 3333321 1223333333444445678889999999999999999999999
Q ss_pred CCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEE
Q psy4818 336 NNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGF 415 (734)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ 415 (734)
...+...|+.++.+.+..++.++...+++.+++....+....+.+.++.+|..++.+++|.+++..+....+.+.++|.+
T Consensus 321 ~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~ 400 (712)
T KOG2237|consen 321 KEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQF 400 (712)
T ss_pred cCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEEEEE
Confidence 87766789999999888888888888878888888887766666677778888899999988887777778889999999
Q ss_pred ecCCCCceEEEEeCCCCcCCCCCCceeEEeeccC--CCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEE
Q psy4818 416 TSFLQPGTIYHCNIPENITDQDDFKPTIFRETIV--PEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY 493 (734)
Q Consensus 416 ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~ 493 (734)
+|+.+|+.+|.||+ ++++.+..+++.... ++++.+.|.+++++++|+||++||++|++.++.+.+++.|++||
T Consensus 401 sS~l~P~~iy~yDl-----~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLy 475 (712)
T KOG2237|consen 401 SSFLTPGSIYDYDL-----ANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLY 475 (712)
T ss_pred eccCCCCeEEEeec-----cCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhhhcCCCceEEE
Confidence 99999999999999 566545666766654 78999999999999999999999999999888888899999999
Q ss_pred ecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEE
Q psy4818 494 GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIM 573 (734)
Q Consensus 494 ~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~ 573 (734)
+||||+.++.++|....+.++. +|++.+.+|+|||||+|..||+.|++..|+|.|+||++|++||+++|++.|+++++.
T Consensus 476 gYGay~isl~p~f~~srl~lld-~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~ 554 (712)
T KOG2237|consen 476 GYGAYGISLDPSFRASRLSLLD-RGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIE 554 (712)
T ss_pred EecccceeeccccccceeEEEe-cceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEe
Confidence 9999999999999999888887 699999999999999999999999999999999999999999999999999999999
Q ss_pred EcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCc
Q psy4818 574 GGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPA 653 (734)
Q Consensus 574 G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~ 653 (734)
|+|+||+|++++++++||+|+|+|+.+||+|+++++.+++++.|..+|+...+++.++.+.+++||+++++|.....||.
T Consensus 555 G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS 634 (712)
T KOG2237|consen 555 GGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIKISPYSPVDNIKKQVQYPS 634 (712)
T ss_pred cccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhheecccCccCCCchhccCcc
Confidence 99999999999999999999999999999999999999999999887766555555555555555554444322256999
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCC
Q psy4818 654 TLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYY 730 (734)
Q Consensus 654 ~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 730 (734)
+||+++.+|+||+++|+.+++++||+.........+|+.+.+.+++||+..+++.+++++.+..++||.+.++..+.
T Consensus 635 ~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~~~~~ 711 (712)
T KOG2237|consen 635 MLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLNSDWI 711 (712)
T ss_pred eEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 99999999999999999999999999876554445789999999999999999999999999999999999987764
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-98 Score=838.68 Aligned_cols=661 Identities=25% Similarity=0.434 Sum_probs=555.4
Q ss_pred CCCCccCCceeccccCceecCCCcccCCC--CChhHHHHHHHhhhhhHHhhcCC-chHHHHHHHHHHhccCCccCCcEEe
Q psy4818 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYP--HCAETQIFNFMQNNISNPYCQNH-TDREAIKEQLLRMANYEKYSAPQRQ 99 (734)
Q Consensus 23 ~P~~~~~~~~~~~~hg~~~~D~y~wled~--~~~~~~~~~~~q~~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~~ 99 (734)
||.++++|++ +++||+++.|||+||||. ++|++++||++||+|++++|+++ +++++|+++|++++..++.+.|...
T Consensus 2 pP~a~~~~~~-~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 80 (686)
T PRK10115 2 LPKAARIPHA-MTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIK 80 (686)
T ss_pred cCCCCCCCee-EEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEE
Confidence 6788999965 899999999999999996 59999999999999999999996 9999999999999999999999999
Q ss_pred CCeEEEEEEcCCCCeeEEEEEeCC-C---CCeEEEeCCCCcCCC-CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEE
Q psy4818 100 ENNYFYFHNKGLQNHSILYVQRNL-T---GSTEVFLDPNKLSKD-GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKD 174 (734)
Q Consensus 100 g~~~~~~~~~~~~~~~~l~~~~~~-~---g~~~~l~d~~~~~~~-~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~d 174 (734)
|+++||.++..+++ ..||++... + +.+++|||+|+++++ +++.+.++.|||||++|||+.+.+|+|+++|+++|
T Consensus 81 g~~~y~~~~~~g~~-~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d 159 (686)
T PRK10115 81 NGYRYRHIYEPGCE-YAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRN 159 (686)
T ss_pred CCEEEEEEEcCCCc-cEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEE
Confidence 99989888876664 555555432 2 458999999999655 68999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEE
Q psy4818 175 VDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLH 254 (734)
Q Consensus 175 l~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~ 254 (734)
+.+|+.+.+.+.++. ..++|++||++|+|++.++. ..++.+||+|++++++.++++|++++++. +...
T Consensus 160 ~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~----------~~~~~~v~~h~lgt~~~~d~lv~~e~~~~-~~~~ 227 (686)
T PRK10115 160 LETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPV----------TLLPYQVWRHTIGTPASQDELVYEEKDDT-FYVS 227 (686)
T ss_pred CCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCC----------CCCCCEEEEEECCCChhHCeEEEeeCCCC-EEEE
Confidence 999987777776665 46999999999999997431 23668999999999988899999986654 4445
Q ss_pred EEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEe
Q psy4818 255 SEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTIN 334 (734)
Q Consensus 255 ~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 334 (734)
...|.|++++++...+. ..+++++++++. .. ...+..+.......+. +.+.++.+|+.+|.++++++|+.++
T Consensus 228 ~~~s~d~~~l~i~~~~~-~~~~~~l~~~~~-~~-----~~~~~~~~~~~~~~~~-~~~~~~~ly~~tn~~~~~~~l~~~~ 299 (686)
T PRK10115 228 LHKTTSKHYVVIHLASA-TTSEVLLLDAEL-AD-----AEPFVFLPRRKDHEYS-LDHYQHRFYLRSNRHGKNFGLYRTR 299 (686)
T ss_pred EEEcCCCCEEEEEEECC-ccccEEEEECcC-CC-----CCceEEEECCCCCEEE-EEeCCCEEEEEEcCCCCCceEEEec
Confidence 56677999998776654 337888888543 11 0112222222222232 4466789999999988999999999
Q ss_pred cCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEe--eccCcccceE
Q psy4818 335 LNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITH--ISGRRKYNEV 411 (734)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~--~~~~~d~~~l 411 (734)
+.+. .+|+.++++.+...++.+.+.. +++++....++.++|+++++. ++.++.|..+ ...+.. .+.+++++.+
T Consensus 300 ~~~~--~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (686)
T PRK10115 300 VRDE--QQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRK-TREVIGIAFDDPAYVTWIAYNPEPETSRL 375 (686)
T ss_pred CCCc--ccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCC-CCceEEecCCCCceEeeecccCCCCCceE
Confidence 8742 3589999996566788887775 899999999999999999985 4344666532 222223 3333667789
Q ss_pred EEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEE
Q psy4818 412 FYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVI 491 (734)
Q Consensus 412 ~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~v 491 (734)
++.++|+++|+++|.+|+ .++ +.++++....+.+++..+.+|++++++.||.+||++++++++...+++.|+|
T Consensus 376 ~~~~ss~~~P~~~y~~d~-----~~~--~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~l 448 (686)
T PRK10115 376 RYGYSSMTTPDTLFELDM-----DTG--ERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLL 448 (686)
T ss_pred EEEEecCCCCCEEEEEEC-----CCC--cEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEE
Confidence 999999999999999999 566 5777877666668888889999999999999999988887765456778999
Q ss_pred EEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEE
Q psy4818 492 IYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYIT 571 (734)
Q Consensus 492 v~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 571 (734)
|++||||+.+..+.|+..++.|++ +||+|+++|+|||+|||++|+++++..++.++++|+++|+++|++++++||+||+
T Consensus 449 l~~hGg~~~~~~p~f~~~~~~l~~-rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~ 527 (686)
T PRK10115 449 VYGYGSYGASIDADFSFSRLSLLD-RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCY 527 (686)
T ss_pred EEEECCCCCCCCCCccHHHHHHHH-CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeE
Confidence 999999999999999998866655 6999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc---cccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCC
Q psy4818 572 IMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK---FTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNN 648 (734)
Q Consensus 572 i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~ 648 (734)
|+|+|+||+|++++++++|++|+|+|+.+|++|+++++. +.....|..+||+|.+++.+++|+++||++|+++
T Consensus 528 i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~---- 603 (686)
T PRK10115 528 GMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTA---- 603 (686)
T ss_pred EEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCc----
Confidence 999999999999999999999999999999999998752 2333446688999998888999999999999997
Q ss_pred ccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCc---EEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 649 TQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP---LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 649 ~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+++|++||+||.+|+|||++|++||+++|++. +++ +.+++.+++||+....+.+.+++.++.++||.+.+
T Consensus 604 ~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~-------~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 604 QAYPHLLVTTGLHDSQVQYWEPAKWVAKLREL-------KTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred cCCCceeEEecCCCCCcCchHHHHHHHHHHhc-------CCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 89998999999999999999999999999998 555 55555599999988888888999999999999999
Q ss_pred CCC
Q psy4818 726 GLK 728 (734)
Q Consensus 726 ~~~ 728 (734)
+..
T Consensus 677 ~~~ 679 (686)
T PRK10115 677 QGT 679 (686)
T ss_pred CCc
Confidence 875
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-88 Score=692.50 Aligned_cols=634 Identities=34% Similarity=0.562 Sum_probs=521.2
Q ss_pred ecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcEEeCCeEEEEEEcCCCCeeEEEEE
Q psy4818 41 IKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQ 120 (734)
Q Consensus 41 ~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~~ 120 (734)
..|||+||||++++|+++|+++||+.|..+|...+.++.+.+++.+++..++.+.|...|+++|..+++. ++...+||+
T Consensus 2 ~~DPy~wlEd~~~~eal~wv~~~N~~t~~~L~~~~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~-~~p~Glwr~ 80 (648)
T COG1505 2 VPDPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDA-LYPRGLYRR 80 (648)
T ss_pred CCCcchhhhcCCcHHHHHHHHhhhhHHHHHhhcchhhHHHHHHHHHHhhccccCcceeccceeEEeeccc-cCcceeEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999999886 455678988
Q ss_pred eCC------CCCeEEEeCCCCcCCCC--cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCe
Q psy4818 121 RNL------TGSTEVFLDPNKLSKDG--TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPS 192 (734)
Q Consensus 121 ~~~------~g~~~~l~d~~~~~~~~--~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~ 192 (734)
... .++|++|+|+++|+++. .+.+++.+.+||+++++|+.+.+|++...++++|++||..+... +..+.+
T Consensus 81 ttl~syrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~--~f~~~~ 158 (648)
T COG1505 81 TTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEE--GFKFPG 158 (648)
T ss_pred ecceeecccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEecccccccCC--Cccccc
Confidence 643 57899999999999773 78889999999999999999999999999999999999877654 333456
Q ss_pred eEEEcCCcEEEEEEEecCCCCCCCCcccccCCc---EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 193 ISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ---KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 193 ~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~---~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
+.|..++ +++|++...+ +..+.+..+. .+++..+.+++..++.++...+-+.++.....+.|+++.+....
T Consensus 159 ~~wld~d-~~~~~~~~~~-----~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~~~~ 232 (648)
T COG1505 159 ISWLDDD-GVFVSRYWRP-----KEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLW 232 (648)
T ss_pred eEEecCC-CEEEecccCC-----cccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccchhhheee
Confidence 9998887 7888776542 2233455554 44555566788888888876655545566677777777664333
Q ss_pred cCCCC-ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec
Q psy4818 270 NNTQG-SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348 (734)
Q Consensus 270 ~~~~~-~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 348 (734)
-..+. ..++ +++-+. + ...+..++...+..+.....+...+++.+... +..+. ...++.
T Consensus 233 ~~~~~~~~~~-l~~p~~----~--~~~~~~l~~~~r~dw~~~~~~~g~l~l~~~e~----------~~~g~---~~a~~~ 292 (648)
T COG1505 233 LGTSGKGLIK-LGLPDK----V--GYEWGKLVNTLRADWTFADVDYGLLYLLTDED----------LELGK---VIAEFI 292 (648)
T ss_pred EeccCCCcee-ccCCcc----c--cceeeeeeEeecccccccCcccceEEEEehhc----------cccCc---eeEEec
Confidence 22221 2233 222220 0 01122222222222222122222233322221 11122 222444
Q ss_pred CCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEE
Q psy4818 349 EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
+.+...++++..++ +++++....+..+++.++++ +|...+.+.++ .+.+..++.+.+++.+++.++++++|+++|++
T Consensus 293 P~~~~~le~v~tt~-~~~va~~l~nv~~~l~v~~~-~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~ 370 (648)
T COG1505 293 PEEEQSLEQVVTTK-DKLVAGTLDNVSGRLEVYDL-KGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRL 370 (648)
T ss_pred CCcccceeeeEEEc-CeEEeeeehhccceEEEecc-CceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEE
Confidence 44478888888887 89999999999889999998 57777888877 67775556667889999999999999999999
Q ss_pred eCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc
Q psy4818 428 NIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS 507 (734)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~ 507 (734)
++ .++ +++.++.... .|+++++.+++.+.+|.||++||.++++ ++.+.+ +.|++||.|||+..+..|.|+
T Consensus 371 ~~-----~~~--eLe~ik~~p~-~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~fs 440 (648)
T COG1505 371 DL-----FGG--ELEVIREQPV-QFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPRFS 440 (648)
T ss_pred ec-----CCc--eehhhhhccC-CcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccccCCccc
Confidence 99 345 5666666444 5999999999999999999999999999 887767 899999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh
Q psy4818 508 ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 508 ~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 587 (734)
+.+..||. +|++++.+|+|||||||+.||+++.+.++++.|+||.++++.|++++++.|++++|.|+|+||+|+.++++
T Consensus 441 ~~~~~WLe-rGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alT 519 (648)
T COG1505 441 GSRKLWLE-RGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALT 519 (648)
T ss_pred hhhHHHHh-cCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeec
Confidence 99977776 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC
Q psy4818 588 QRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP 667 (734)
Q Consensus 588 ~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~ 667 (734)
|+|++|.|+||.+|++||++|+.+.+|..|+.|||+|++++.+..+.+||||+|++. +++|||+||++|.+|+||+|
T Consensus 520 QrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~---g~kYP~~LITTs~~DDRVHP 596 (648)
T COG1505 520 QRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKP---GQKYPPTLITTSLHDDRVHP 596 (648)
T ss_pred cChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCc---cccCCCeEEEcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+|++||+++|+++ +.|+.+.+.-++||+...+..+.+++.+.++.||.+.|+
T Consensus 597 aHarKfaa~L~e~-------~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 597 AHARKFAAKLQEV-------GAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred hHHHHHHHHHHhc-------CCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999 899999999999999999888778999999999999885
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=451.95 Aligned_cols=406 Identities=33% Similarity=0.581 Sum_probs=323.0
Q ss_pred CCCCccCCceeccccCceecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCC-chHHHHHHHHHHhccCCccCCcEEeCC
Q psy4818 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNH-TDREAIKEQLLRMANYEKYSAPQRQEN 101 (734)
Q Consensus 23 ~P~~~~~~~~~~~~hg~~~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~~g~ 101 (734)
||.+++.+++ +++||+++.|||+||||.++|++++||++||+|++++|+++ ++++.|+++|++++..++.+.|...|+
T Consensus 1 P~~~~~~~~~-~~~hg~~~~DpY~WLed~~~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~ 79 (414)
T PF02897_consen 1 PPTARKPPVV-ETLHGVTITDPYRWLEDDDSPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGG 79 (414)
T ss_dssp S-TTS-TTSE-EEETTEEEE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETT
T ss_pred CCCCCCCCee-eecCCCEeecCchhhcCCCCHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECC
Confidence 4555555554 99999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eEEEEEEcCCCCeeEEEEEeCC--CCC-eEEEeCCCCcCCCC-cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy4818 102 NYFYFHNKGLQNHSILYVQRNL--TGS-TEVFLDPNKLSKDG-TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT 177 (734)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~--~g~-~~~l~d~~~~~~~~-~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~ 177 (734)
++||.++.++++++++||+... ++. +++|||+|++++++ ...++.+++||||++|||+.+.+|+|+++|+++|+++
T Consensus 80 ~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t 159 (414)
T PF02897_consen 80 YYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET 159 (414)
T ss_dssp EEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT
T ss_pred eEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC
Confidence 9999999998999999999877 344 59999999999887 7778899999999999999999999999999999999
Q ss_pred CCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEE
Q psy4818 178 GKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV 257 (734)
Q Consensus 178 g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 257 (734)
|+.+.+.+..+.+..++|++||+.|+|++.+..... . +...+.+||+|++|++..++++||+++++..++.++.+
T Consensus 160 g~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~---~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~ 234 (414)
T PF02897_consen 160 GKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRT---S--DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR 234 (414)
T ss_dssp TEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE
T ss_pred CcCcCCcccccccceEEEeCCCCEEEEEEeCccccc---c--cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe
Confidence 998887777776555999999999999998652110 0 24458899999999999989999999877643778999
Q ss_pred ecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 258 TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 258 SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
|+||++|++.+.+....+++|++++.++. .....+..+..........+.+.|+.||+++|.++++++|+.+++++
T Consensus 235 s~d~~~l~i~~~~~~~~s~v~~~d~~~~~----~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~ 310 (414)
T PF02897_consen 235 SKDGRYLFISSSSGTSESEVYLLDLDDGG----SPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLAD 310 (414)
T ss_dssp -TTSSEEEEEEESSSSEEEEEEEECCCTT----TSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTS
T ss_pred cCcccEEEEEEEccccCCeEEEEeccccC----CCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccc
Confidence 99999999988775555899999998731 01234555655555555557777999999999999999999999987
Q ss_pred CCCCCce-EeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEE
Q psy4818 338 PCEKNWK-TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGF 415 (734)
Q Consensus 338 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ 415 (734)
.....|. .++++.+...+..+..++ ++|++....++.++|.++++..++....+..+ .|.+.+++.+++++.++|.+
T Consensus 311 ~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 311 PSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp TSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred cccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 7643456 666666566788888776 89999999999999999999536666777776 67777888888999999999
Q ss_pred ecCCCCceEEEEeCCCCcCCCCCCceeEEee
Q psy4818 416 TSFLQPGTIYHCNIPENITDQDDFKPTIFRE 446 (734)
Q Consensus 416 ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~ 446 (734)
+|+++|+.+|.||+ +++ +.+++++
T Consensus 390 ss~~~P~~~y~~d~-----~t~--~~~~~k~ 413 (414)
T PF02897_consen 390 SSFTTPPTVYRYDL-----ATG--ELTLLKQ 413 (414)
T ss_dssp EETTEEEEEEEEET-----TTT--CEEEEEE
T ss_pred eCCCCCCEEEEEEC-----CCC--CEEEEEe
Confidence 99999999999999 677 6777664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-48 Score=432.28 Aligned_cols=570 Identities=18% Similarity=0.223 Sum_probs=383.6
Q ss_pred cCCcE--EeCCeEEEEEEcC----CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCc
Q psy4818 93 YSAPQ--RQENNYFYFHNKG----LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSD 166 (734)
Q Consensus 93 ~~~p~--~~g~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~ 166 (734)
.+.|. +.|+.++|..... ......+|+.+... +..... ...+..+.|||||+.++|.... +..
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~------~~~~~~----~~~~~~~~~spdg~~~~~~~~~-~~~ 83 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT------VRLLTF----GGGVSELRWSPDGSVLAFVSTD-GGR 83 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEeccc------cccccc----CCcccccccCCCCCEEEEEecc-CCC
Confidence 44444 5578888887641 12234556543211 111111 1225678999999999998843 334
Q ss_pred eEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCC-----------ccccc-CCcEEEEEECCC
Q psy4818 167 WNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGT-----------ETTAH-MGQKIYYHVLGT 234 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~-----------~~~~~-~~~~l~~~~l~t 234 (734)
..++|++++. | .+...... .....|+|+|+.+.+......... ++. ..... ....+++.+.++
T Consensus 84 ~~~l~l~~~~-g-~~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~ 158 (620)
T COG1506 84 VAQLYLVDVG-G-LITKTAFG--VSDARWSPDGDRIAFLTAEGASKR-DGGDHLFVDRLPVWFDGRGGERSDLYVVDIES 158 (620)
T ss_pred cceEEEEecC-C-ceeeeecc--cccceeCCCCCeEEEEeccccccc-CCceeeeecccceeecCCCCcccceEEEccCc
Confidence 6799999988 5 22222222 367899999999999432211100 110 00011 233455555543
Q ss_pred CCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCC-CC--ceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EE
Q psy4818 235 EQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT-QG--SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-II 310 (734)
Q Consensus 235 ~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~--~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~ 310 (734)
. .. .+ ......+....++++++.++....... .. ...+++...+ .....+..+...... .+
T Consensus 159 -~-~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 223 (620)
T COG1506 159 -K-LI-KL---GLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGN---------GELESLTPGEGSISKLAF 223 (620)
T ss_pred -c-cc-cc---cCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCC---------CceEEEcCCCceeeeeee
Confidence 1 00 11 111223345666777777776655433 11 3333333333 122333333222222 38
Q ss_pred EecCCeEEEEeCCCCC----CceEEEEecCCCCCCCceEeecCCC----CceeEEEEEeeCCEEEEEEEe-CCceeEEEE
Q psy4818 311 ANNGPELIVKTTKNAP----KGKVVTINLNNPCEKNWKTLIPEDE----NRTLDVVAAVANNKLIVHYIQ-NVRSVMDLH 381 (734)
Q Consensus 311 s~dg~~l~~~s~~~~~----~~~l~~~d~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~ 381 (734)
.++|+.+++..+.... ...++.++.+.+. ........+ ...+... .+++.+++.... .+...++..
T Consensus 224 ~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~l~~~ 298 (620)
T COG1506 224 DADGKSIALLGTESDRGLAEGDFILLLDGELGE---VDGDLSSGDDTRGAWAVEGG--LDGDGLLFIATDGGGSSPLFRV 298 (620)
T ss_pred CCCCCeeEEeccCCccCccccceEEEEeccccc---cceeeccCCcccCcHHhccc--cCCCcEEEEEecCCCceEEEEE
Confidence 8999988888765432 2345555522222 111111111 1111111 344667766665 454555555
Q ss_pred ECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCc-eEE
Q psy4818 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLF-QTK 460 (734)
Q Consensus 382 dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 460 (734)
+...+. ...+..+.+.+..++. +++.+++.++++.+|+++|.++. ... .++.. .....+....+ ++|
T Consensus 299 ~~~~~~-~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~-----~~~---~~~~~-~~~~~~~~~~~~~~e 366 (620)
T COG1506 299 DDLGGG-VEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR-----GEE---AKLTS-SNNSGLKKVKLAEPE 366 (620)
T ss_pred eccCCc-eeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC-----CCc---eEEee-cccccccccccCCce
Confidence 442232 2344444577767765 78899999999999999999985 111 22222 12222333333 899
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcc
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAG 540 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~ 540 (734)
.+++++.||.+|+++++.|.++++.+++|+||++||||.....+.|....+ .|+.+||+|+.+|+|||++||++|.++.
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q-~~~~~G~~V~~~n~RGS~GyG~~F~~~~ 445 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQ-VLASAGYAVLAPNYRGSTGYGREFADAI 445 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhH-HHhcCCeEEEEeCCCCCCccHHHHHHhh
Confidence 999999999999999999999988888999999999998888888887664 4556799999999999999999999999
Q ss_pred ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccc--
Q psy4818 541 RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE-- 618 (734)
Q Consensus 541 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~-- 618 (734)
.+.++..+++|+++++++|.+.+++|++||+|+|+||||||+++++++.| +|+|+++.++.++++.+........+.
T Consensus 446 ~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (620)
T COG1506 446 RGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDP 524 (620)
T ss_pred hhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCH
Confidence 99999999999999999999999999999999999999999999999987 899999999988887665432222111
Q ss_pred cc-cCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC
Q psy4818 619 SE-FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697 (734)
Q Consensus 619 ~~-~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 697 (734)
.+ .+.+.. ..+.+.+.||+.++.+ +++| +||+||++|.|||+.|+++|+++|+.. |+++++++||
T Consensus 525 ~~~~~~~~~--~~~~~~~~sp~~~~~~----i~~P-~LliHG~~D~~v~~~q~~~~~~aL~~~-------g~~~~~~~~p 590 (620)
T COG1506 525 EENGGGPPE--DREKYEDRSPIFYADN----IKTP-LLLIHGEEDDRVPIEQAEQLVDALKRK-------GKPVELVVFP 590 (620)
T ss_pred HHhCCCccc--ChHHHHhcChhhhhcc----cCCC-EEEEeecCCccCChHHHHHHHHHHHHc-------CceEEEEEeC
Confidence 11 122221 3456789999999997 8998 999999999999999999999999998 9999999999
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 698 DAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 698 ~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+++|++..+.+ +...+.++++||.++|+.
T Consensus 591 ~e~H~~~~~~~-~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 591 DEGHGFSRPEN-RVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CCCcCCCCchh-HHHHHHHHHHHHHHHhcC
Confidence 99999998766 478999999999999874
|
|
| >KOG2281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=317.31 Aligned_cols=333 Identities=16% Similarity=0.203 Sum_probs=257.3
Q ss_pred EEEEEEEeCCc--eeEEEEECC-CCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCce
Q psy4818 365 KLIVHYIQNVR--SVMDLHDLN-TGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441 (734)
Q Consensus 365 ~l~~~~~~~~~--~~l~~~dl~-~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~ 441 (734)
-+||....++. .+||+..++ .|+. .+++.+ |.-.....+.+-+.++..+++-.+|+.+..|.+. .++ ..
T Consensus 517 LVYf~gt~d~PlE~hLyvvsye~~g~~-~rlt~~-g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls-----~~~-~~ 588 (867)
T KOG2281|consen 517 LVYFVGTKDTPLEHHLYVVSYENPGEI-ARLTEP-GYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLS-----WPE-ND 588 (867)
T ss_pred EEEEEccCCCCceeeEEEEEEecCCce-eeccCC-CcccchhhhhhhhhHhhhhhcCCCCceEEEEecc-----CCc-cC
Confidence 35667777764 489999886 5654 677755 2111223344445577778999999999988883 331 01
Q ss_pred eEEeecc-----CC-CCCCCCc-eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccHH---H
Q psy4818 442 TIFRETI-----VP-EFEPTLF-QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSIS---R 510 (734)
Q Consensus 442 ~~~~~~~-----~~-~~~~~~~-~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~---~ 510 (734)
.+..+.. +. ...+.+| ..|-+.|.+..|..+.+.+|+|.++++.+++|+++++||||+.+. ...|... .
T Consensus 589 ~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR 668 (867)
T KOG2281|consen 589 PLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLR 668 (867)
T ss_pred cccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhh
Confidence 1111111 11 1234455 458888999889999999999999999999999999999999874 3445432 3
Q ss_pred HHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcC
Q psy4818 511 CMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQR 589 (734)
Q Consensus 511 ~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~ 589 (734)
...|+.+||+|+++|.||+...|..|-...+..+++.+++|.+.++++|+++ |++|++||+|.||||||||++++++++
T Consensus 669 ~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~ 748 (867)
T KOG2281|consen 669 FCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQY 748 (867)
T ss_pred hhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcC
Confidence 4678889999999999999999999999999999999999999999999998 599999999999999999999999999
Q ss_pred CCceeEEEEcCCcchhccccccccCccccccc-CCCCCHHHHHHHHhCCccCCCCCCCCCccCC-cEEEEecCCCCCCCC
Q psy4818 590 PELYGAALILVGALDMLRFNKFTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYP-ATLVLTGDHDDRVPP 667 (734)
Q Consensus 590 p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P-~~Li~~g~~D~~v~~ 667 (734)
|++|+++|+++|+++|..+... +.++| |.|++.|. .+.+-|-..++.+. -+-| .+|++||.-|.+|++
T Consensus 749 P~IfrvAIAGapVT~W~~YDTg-----YTERYMg~P~~nE~--gY~agSV~~~Vekl---pdepnRLlLvHGliDENVHF 818 (867)
T KOG2281|consen 749 PNIFRVAIAGAPVTDWRLYDTG-----YTERYMGYPDNNEH--GYGAGSVAGHVEKL---PDEPNRLLLVHGLIDENVHF 818 (867)
T ss_pred cceeeEEeccCcceeeeeeccc-----chhhhcCCCccchh--cccchhHHHHHhhC---CCCCceEEEEecccccchhh
Confidence 9999999999999999876542 34555 77754432 23344555544431 1222 299999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.|...++.+|-++ |+|.++.+||++-|+...+... +..-++++.|+.+
T Consensus 819 ~Hts~Lvs~lvka-------gKpyeL~IfP~ERHsiR~~es~-~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 819 AHTSRLVSALVKA-------GKPYELQIFPNERHSIRNPESG-IYYEARLLHFLQE 866 (867)
T ss_pred hhHHHHHHHHHhC-------CCceEEEEccccccccCCCccc-hhHHHHHHHHHhh
Confidence 9999999999999 9999999999999999887664 6777788999865
|
|
| >KOG2100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=316.76 Aligned_cols=551 Identities=16% Similarity=0.173 Sum_probs=342.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCC---Cc--eEEEEEEECCCCC-c---ccc-----cccccccCeeEEEcCCcEEEEEEE
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSG---SD--WNTLHIKDVDTGK-D---YPE-----VLKNVKFPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g---~~--~~~l~v~dl~~g~-~---~~~-----~~~~~~~~~~~wSpDg~~l~y~~~ 207 (734)
..+..+.|||.|+.++|+...+= .. ...+.+..-.... . .++ .... ...+..|||||..++|...
T Consensus 148 ~~~~~~~wsp~~~~l~yv~~~niy~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~-~~~a~wwsp~g~~la~~~~ 226 (755)
T KOG2100|consen 148 SKIQYASWSPLGNDLAYVLHNNIYYQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLS-SDSAIWWSPDGDRLAYASF 226 (755)
T ss_pred CeeEEEEEcCCCCEEEEEEecccccccCcCCCceEEEecCCCceEEcCCCCceeehhhcc-cCccceeCCCCceeEEEEe
Confidence 34688999999999999986320 00 0111121111110 0 011 0111 1256789999999999988
Q ss_pred ecCCCCC-------CC--Ccc----------cccCCcEEEEEECCCCCCCC-eeEEecCCCCeeEEEEEEecCCcEEEEE
Q psy4818 208 CDINGTA-------DG--TET----------TAHMGQKIYYHVLGTEQDKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVS 267 (734)
Q Consensus 208 ~~~~~~~-------~~--~~~----------~~~~~~~l~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~ 267 (734)
++..... +. ... ..+-...+++.+........ ..-...+....+.....|..+.+.++..
T Consensus 227 ~dt~V~~~~~~~~~~~~~yp~~~~~~ypk~g~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 306 (755)
T KOG2100|consen 227 NDTKVETINLPGYTDDDQYPKSTNFHYPKAGAPNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEKVLVVW 306 (755)
T ss_pred cccccceEEeccccccccCcccceeecCCCCCCCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCccEEEEE
Confidence 6643210 00 000 00111233333322111000 0000011122345567788777776666
Q ss_pred EecCCCCceEEEEeCCCCCCCcc-cC-CCC-ceeeeccccceEEEEEecCC-eEEEEeCCCCCCceEEEEecCCCCCCCc
Q psy4818 268 TSNNTQGSDLHYFDLHSLPDGKI-SG-KFP-LKTVIPGMDHHHEIIANNGP-ELIVKTTKNAPKGKVVTINLNNPCEKNW 343 (734)
Q Consensus 268 ~~~~~~~~~i~~~d~~~~~~~~l-~~-~~~-~~~l~~~~~~~~~~~s~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 343 (734)
..+......+-++|.. +.+... .. ... |. .. ......++.|+. .+++.....++...+..+....+. ..
T Consensus 307 ~~r~~~~~~~~~cd~~-~~~~~~~~~~~~~~W~---~~-~~~~~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~--~~ 379 (755)
T KOG2100|consen 307 TNREQNISVETLCDTP-GICRVVYEESSDGGWV---EH-QNVEPVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGS--EP 379 (755)
T ss_pred EccCCCeeeeEEecCc-ccceeeEecccccccc---cc-ccccceEeecCCceeEEEeeccCCEEEEEEEEcCCCC--cc
Confidence 6554444455555554 111100 00 000 11 10 111123666763 445545444433345555554442 12
Q ss_pred eEeecCCCCceeEEEEE-eeCCEEEEEEEeC--CceeEEEEECCCCceeeeeCCC----CceEEeeccCcccceEEEEEe
Q psy4818 344 KTLIPEDENRTLDVVAA-VANNKLIVHYIQN--VRSVMDLHDLNTGKRLHSFPLD----LGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 344 ~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~~~~l~~~dl~~g~~~~~l~~~----~g~v~~~~~~~d~~~l~~~~s 416 (734)
..++.+. +.+...... .+.+.+++..... +..+|+.+++.++.. ..++.. .+.+.+++++...+.+++.++
T Consensus 380 ~~lt~g~-w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~-~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~ 457 (755)
T KOG2100|consen 380 RMLTSGN-WEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTV-ESLTCSLITGPCTYLSVSFSKSAKYYVLSCS 457 (755)
T ss_pred ccccccc-eEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccccc-ccccccCCCCcceEEEEecCCcccEEEEEcc
Confidence 3344443 444322222 2446788887775 345788888865543 334432 334556677766777888888
Q ss_pred cCCCCceEEEEeCCCCcCCCCCCceeEEeecc-CC-CCC---CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEE
Q psy4818 417 SFLQPGTIYHCNIPENITDQDDFKPTIFRETI-VP-EFE---PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVI 491 (734)
Q Consensus 417 s~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~v 491 (734)
.+..|.. .+...+. ...+ ....|.... +. .+. ......+.+.+ ||....+.++.|+++.+.+++|+|
T Consensus 458 gP~~p~~--~~~~~~~--~~~~-~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~---~~~~~~~~~~lP~~~~~~~kyPll 529 (755)
T KOG2100|consen 458 GPKVPDG--QLTRHSS--KNSK-TIVVLETNEELKKTIENVALPIVEFGKIEI---DGITANAILILPPNFDPSKKYPLL 529 (755)
T ss_pred CCCCCcc--eeecccc--ccce-EEEEeccChhhHHHhhcccCCcceeEEEEe---ccEEEEEEEecCCCCCCCCCCCEE
Confidence 8887743 2222100 1110 122222211 11 111 11223333433 888999999999999888999999
Q ss_pred EEecCCCCCcC-CccccHHHH-HHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc
Q psy4818 492 IYGYGGYGVSV-LPTFSISRC-MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569 (734)
Q Consensus 492 v~~hGg~~~~~-~~~~~~~~~-~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 569 (734)
|.+||||++.. ...|...+. ..+..+|++|+.+|+||+|++|.++..+..+..|..+++|++.+++++++.+++|++|
T Consensus 530 v~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~r 609 (755)
T KOG2100|consen 530 VVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSR 609 (755)
T ss_pred EEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHH
Confidence 99999998543 233333332 3466789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcChHHHHHHHHHhcCC-CceeEEEEcCCcchhccccccccCccccccc-CCCCCHHHHHHHHhCCccCCCCCCCC
Q psy4818 570 ITIMGGSNGGLLVGACLNQRP-ELYGAALILVGALDMLRFNKFTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIKVPPN 647 (734)
Q Consensus 570 i~i~G~S~GG~~~~~~~~~~p-~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~~ 647 (734)
|+|+|+|+|||+++.++...| +.|+|+++.+|++|+. ++... +.++| |.|..... .+.+.++..++..
T Consensus 610 i~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~----~terymg~p~~~~~--~y~e~~~~~~~~~--- 679 (755)
T KOG2100|consen 610 VAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDST----YTERYMGLPSENDK--GYEESSVSSPANN--- 679 (755)
T ss_pred eEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccc----ccHhhcCCCccccc--hhhhccccchhhh---
Confidence 999999999999999999987 7999999999999999 44322 34555 66654332 2556677776665
Q ss_pred CccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 648 NTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 648 ~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
++.|.+|++||+.|++|+++|+.+++++|+.+ |+++.+.+||+++|++...... ...+..+..||..+++.
T Consensus 680 -~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~-------gv~~~~~vypde~H~is~~~~~-~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 680 -IKTPKLLLIHGTEDDNVHFQQSAILIKALQNA-------GVPFRLLVYPDENHGISYVEVI-SHLYEKLDRFLRDCFGS 750 (755)
T ss_pred -hccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC-------CCceEEEEeCCCCcccccccch-HHHHHHHHHHHHHHcCc
Confidence 66676899999999999999999999999999 9999999999999999876543 57778899999988775
Q ss_pred CC
Q psy4818 728 KY 729 (734)
Q Consensus 728 ~~ 729 (734)
..
T Consensus 751 ~~ 752 (755)
T KOG2100|consen 751 PV 752 (755)
T ss_pred cc
Confidence 54
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=277.69 Aligned_cols=209 Identities=33% Similarity=0.512 Sum_probs=172.4
Q ss_pred ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHH
Q psy4818 504 PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVG 583 (734)
Q Consensus 504 ~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~ 583 (734)
|+|+. ..++|+++||+|+.+|+||+++||.+|+..+...++..+++|+++++++|++++.+|++||+|+|+|+||++++
T Consensus 1 ~~f~~-~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~ 79 (213)
T PF00326_consen 1 PSFNW-NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLAL 79 (213)
T ss_dssp ---SH-HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHH
T ss_pred CeeeH-HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccc
Confidence 45664 45788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeEEEEcCCcchhccccccc--cCcccccccCCCC-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecC
Q psy4818 584 ACLNQRPELYGAALILVGALDMLRFNKFT--IAYYSESEFGSPN-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGD 660 (734)
Q Consensus 584 ~~~~~~p~~~~a~v~~~~~~d~~~~~~~~--~~~~~~~~~g~~~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~ 660 (734)
++++++|++|+++|+.+|++|+..+...+ ....+..+++.+. .++.+..+..++++.++. ++ ||+||+||+
T Consensus 80 ~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-----~~-~P~li~hG~ 153 (213)
T PF00326_consen 80 LAATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQ-----IK-PPVLIIHGE 153 (213)
T ss_dssp HHHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG-----GG-SEEEEEEET
T ss_pred hhhcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhcccccccccc-----CC-CCEEEEccC
Confidence 99999999999999999999998876543 2222345567763 455555555555555522 22 349999999
Q ss_pred CCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 661 HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 661 ~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+|.+||+.++.+++++|++. |++++++++|++||++..+.+. .+...++++||.++|+.
T Consensus 154 ~D~~Vp~~~s~~~~~~L~~~-------g~~~~~~~~p~~gH~~~~~~~~-~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 154 NDPRVPPSQSLRLYNALRKA-------GKPVELLIFPGEGHGFGNPENR-RDWYERILDFFDKYLKK 212 (213)
T ss_dssp TBSSSTTHHHHHHHHHHHHT-------TSSEEEEEETT-SSSTTSHHHH-HHHHHHHHHHHHHHTT-
T ss_pred CCCccCHHHHHHHHHHHHhc-------CCCEEEEEcCcCCCCCCCchhH-HHHHHHHHHHHHHHcCC
Confidence 99999999999999999999 9999999999999999888775 58999999999999975
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=207.77 Aligned_cols=298 Identities=11% Similarity=0.104 Sum_probs=210.0
Q ss_pred hhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcE
Q psy4818 63 QNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142 (734)
Q Consensus 63 q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~ 142 (734)
|+.++++|+...+.++.+..++...+.....+.|...+++++|++..+.+.+..||+++..++..+.|++.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~------ 191 (417)
T TIGR02800 118 LQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREP------ 191 (417)
T ss_pred EEeeeeeEEcCHHHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCc------
Confidence 66677788877788888999999888877778888889999999887656678899998777778888886532
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+..+.|||||++|||....++. .+|+++|+++|+.............+.|||||+.|+|+....
T Consensus 192 -~~~p~~Spdg~~la~~~~~~~~--~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~------------- 255 (417)
T TIGR02800 192 -ILSPAWSPDGQKLAYVSFESGK--PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD------------- 255 (417)
T ss_pred -eecccCCCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC-------------
Confidence 5678999999999999876544 789999999987533222222225689999999999986422
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
...+||+++++++...++. .. ......+.|+|||++|++.+.+.. ...||++++.++. ...+...
T Consensus 256 ~~~~i~~~d~~~~~~~~l~--~~---~~~~~~~~~s~dg~~l~~~s~~~g-~~~iy~~d~~~~~---------~~~l~~~ 320 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLTRLT--NG---PGIDTEPSWSPDGKSIAFTSDRGG-SPQIYMMDADGGE---------VRRLTFR 320 (417)
T ss_pred CCccEEEEECCCCCEEECC--CC---CCCCCCEEECCCCCEEEEEECCCC-CceEEEEECCCCC---------EEEeecC
Confidence 2347999999887543222 11 112345789999999999876533 3589999998732 2333322
Q ss_pred ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEE
Q psy4818 303 MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 303 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 381 (734)
...... .|+|||+.|++.+... +.++|+.++++++. ..++.... ........++++.+++....++...++++
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~----~~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~ 394 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGG----ERVLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLV 394 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCC----eEEccCCC-CCCCceECCCCCEEEEEEeCCCcEEEEEE
Confidence 222222 4999999988877653 56789999998754 33444331 12222333466788888888888889998
Q ss_pred ECCCCceeeeeCCCCceEEeecc
Q psy4818 382 DLNTGKRLHSFPLDLGQITHISG 404 (734)
Q Consensus 382 dl~~g~~~~~l~~~~g~v~~~~~ 404 (734)
+. +|+..+.++.+.+.+..+++
T Consensus 395 ~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 395 ST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EC-CCceeeECCCCCCCcCCCCC
Confidence 87 67766777766565544443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-20 Score=196.91 Aligned_cols=288 Identities=9% Similarity=0.033 Sum_probs=184.4
Q ss_pred HHHHHHHhccCCccCCcEEeCCeEEEEEEcCCC----CeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcE
Q psy4818 80 IKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQ----NHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKH 155 (734)
Q Consensus 80 l~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~ 155 (734)
+..++...+...-...|..-+.++.|+....+. ....||+++..++..+.|+..... ...++|||||+.
T Consensus 126 ~~h~~~D~~~~~~tg~~g~~~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-------~~sP~wSPDG~~ 198 (428)
T PRK01029 126 KIHEAADTIHYALTGVPGISSGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-------SITPTWMHIGSG 198 (428)
T ss_pred HHHHHHHHHHHHHcCCCccccCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-------cccceEccCCCc
Confidence 445555555544444455558899999875432 256899999888888888764422 467999999988
Q ss_pred --EEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEE--E
Q psy4818 156 --FAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYH--V 231 (734)
Q Consensus 156 --la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 231 (734)
++|.+..+|. .+||++++.+|+....+........+.|||||++|+|+.... ....+|++ +
T Consensus 199 ~~~~y~S~~~g~--~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-------------g~~di~~~~~~ 263 (428)
T PRK01029 199 FPYLYVSYKLGV--PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRY-------------GNPDLFIQSFS 263 (428)
T ss_pred eEEEEEEccCCC--ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCC-------------CCcceeEEEee
Confidence 5567776664 799999999998654443222235799999999999998521 12246654 4
Q ss_pred CCCCC-CCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc-eEEE
Q psy4818 232 LGTEQ-DKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH-HHEI 309 (734)
Q Consensus 232 l~t~~-~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~-~~~~ 309 (734)
+.++. .+...+.... ......+.|||||++|+|.+.+. ...+||++++.... ...+.++..... ....
T Consensus 264 ~~~g~~g~~~~lt~~~--~~~~~~p~wSPDG~~Laf~s~~~-g~~~ly~~~~~~~g-------~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 264 LETGAIGKPRRLLNEA--FGTQGNPSFSPDGTRLVFVSNKD-GRPRIYIMQIDPEG-------QSPRLLTKKYRNSSCPA 333 (428)
T ss_pred cccCCCCcceEeecCC--CCCcCCeEECCCCCEEEEEECCC-CCceEEEEECcccc-------cceEEeccCCCCcccee
Confidence 43321 1222333321 11234689999999999987653 33689999886411 112333332222 2234
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
|||||++|+|.+...+ ..+|+++|+++++ .+.++... .. .....+ ++++.|++.....+...|+++|+.+++.
T Consensus 334 wSPDG~~Laf~~~~~g-~~~I~v~dl~~g~---~~~Lt~~~-~~-~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 334 WSPDGKKIAFCSVIKG-VRQICVYDLATGR---DYQLTTSP-EN-KESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ECCCCCEEEEEEcCCC-CcEEEEEECCCCC---eEEccCCC-CC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 9999999999987654 5679999998876 45555432 22 223334 4556788877777778999999966654
Q ss_pred eeeeCCCCceEEeeccCc
Q psy4818 389 LHSFPLDLGQITHISGRR 406 (734)
Q Consensus 389 ~~~l~~~~g~v~~~~~~~ 406 (734)
+.|+...+.+....++|
T Consensus 408 -~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 408 -RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred -EEeecCCCcccCceecC
Confidence 55654445444455554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=196.64 Aligned_cols=262 Identities=13% Similarity=0.108 Sum_probs=177.5
Q ss_pred CeEEEEEEcC-CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC
Q psy4818 101 NNYFYFHNKG-LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179 (734)
Q Consensus 101 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~ 179 (734)
.++.|+.... .+....||+.+..+...++|+..+. .+..+.|||||++|+|+...+|. .+||++|+.+|+
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~-------~~~~p~wSPDG~~La~~s~~~g~--~~L~~~dl~tg~ 253 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPE-------PLMSPAWSPDGRKLAYVSFENRK--AEIFVQDIYTQV 253 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCC-------cccCceECCCCCEEEEEEecCCC--cEEEEEECCCCC
Confidence 4566665543 3335688888876666777776542 36789999999999999876553 789999999988
Q ss_pred cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec
Q psy4818 180 DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD 259 (734)
Q Consensus 180 ~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp 259 (734)
....+........++|||||+.|+|+...+ ...+||++++.++..+. +... ......+.|||
T Consensus 254 ~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-------------g~~~Iy~~dl~tg~~~~--lt~~---~~~~~~p~wSp 315 (448)
T PRK04792 254 REKVTSFPGINGAPRFSPDGKKLALVLSKD-------------GQPEIYVVDIATKALTR--ITRH---RAIDTEPSWHP 315 (448)
T ss_pred eEEecCCCCCcCCeeECCCCCEEEEEEeCC-------------CCeEEEEEECCCCCeEE--CccC---CCCccceEECC
Confidence 543332222225789999999999987532 24589999998765332 2221 22345689999
Q ss_pred CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc-cceEEEEEecCCeEEEEeCCCCCCceEEEEecCCC
Q psy4818 260 CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM-DHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNP 338 (734)
Q Consensus 260 DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 338 (734)
||++|+|...+.. ..+||++|++++. ...++... ......|+|||+.|+|.+... ..++|+++|++++
T Consensus 316 DG~~I~f~s~~~g-~~~Iy~~dl~~g~---------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~~g 384 (448)
T PRK04792 316 DGKSLIFTSERGG-KPQIYRVNLASGK---------VSRLTFEGEQNLGGSITPDGRSMIMVNRTN-GKFNIARQDLETG 384 (448)
T ss_pred CCCEEEEEECCCC-CceEEEEECCCCC---------EEEEecCCCCCcCeeECCCCCEEEEEEecC-CceEEEEEECCCC
Confidence 9999999876533 3799999998732 23333211 111234999999999987653 4568999999887
Q ss_pred CCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 339 CEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
. .+.++... .. ......++++.+++....++...|+++++ +|+..+.++.+.+.+...+++|
T Consensus 385 ~---~~~lt~~~-~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 385 A---MQVLTSTR-LD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred C---eEEccCCC-CC-CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 6 34444332 11 11223456678888888888889999998 6877677876656555555554
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=186.16 Aligned_cols=217 Identities=11% Similarity=0.102 Sum_probs=151.9
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccC-CCCCchhhhccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGG-GELGEDWHNAGR 541 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-~~~g~~~~~~~~ 541 (734)
.+.+.||.++.+|+..|++. ..++.++||++||-.+.. .+...++.+|+++||+|+.+|+||+ |+.+.++.....
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~---~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~ 88 (307)
T PRK13604 13 VICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM---DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTM 88 (307)
T ss_pred eEEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh---HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcc
Confidence 36678999999999999752 246778999999954432 2234567888899999999999886 666655543221
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc-----c
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY-----Y 616 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-----~ 616 (734)
. ....|+.++++|+.++ +.++|+++|+|+||.++..++...+ .+++|+.+|+.++..+....... .
T Consensus 89 s----~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~~--v~~lI~~sp~~~l~d~l~~~~~~~~~~~p 159 (307)
T PRK13604 89 S----IGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEID--LSFLITAVGVVNLRDTLERALGYDYLSLP 159 (307)
T ss_pred c----ccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCCC--CCEEEEcCCcccHHHHHHHhhhcccccCc
Confidence 1 1268999999999876 3468999999999999877776433 79999999999966443211111 0
Q ss_pred c--ccc---c-CCCC-CHHHHHHHHh------CCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q psy4818 617 S--ESE---F-GSPN-NKTHFHNLLS------YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683 (734)
Q Consensus 617 ~--~~~---~-g~~~-~~~~~~~~~~------~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~ 683 (734)
+ ..+ + |.+- ....+....+ .+|+..++. ++.| +|++||..|..||+.++.+++++++..
T Consensus 160 ~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~----l~~P-vLiIHG~~D~lVp~~~s~~l~e~~~s~--- 231 (307)
T PRK13604 160 IDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKG----LDIP-FIAFTANNDSWVKQSEVIDLLDSIRSE--- 231 (307)
T ss_pred ccccccccccccccccHHHHHHHHHhcCccccccHHHHHhh----cCCC-EEEEEcCCCCccCHHHHHHHHHHhccC---
Confidence 0 000 1 1111 1122222222 234455554 6677 999999999999999999999987533
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCc
Q psy4818 684 LPYQKNPLLLRVEQDAGHGQGTP 706 (734)
Q Consensus 684 ~~~~~~~~~~~~~~~~gH~~~~~ 706 (734)
+.+++.++|++|.+...
T Consensus 232 ------~kkl~~i~Ga~H~l~~~ 248 (307)
T PRK13604 232 ------QCKLYSLIGSSHDLGEN 248 (307)
T ss_pred ------CcEEEEeCCCccccCcc
Confidence 56899999999999864
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=190.32 Aligned_cols=248 Identities=12% Similarity=0.066 Sum_probs=159.6
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCC------
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGG------ 530 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~------ 530 (734)
..+.+++.|. -|..+++.+|+|+. .+.+++|+|+++||+.+....+.+......+++..|++|++||..++|
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~ 95 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGE 95 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCC
Confidence 4666666663 56789999999984 345689999999997765543333333456777789999999976543
Q ss_pred ------CCCchhhhcc-ccccCCCchhH-HHHH-HHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 531 ------ELGEDWHNAG-RLLKKQNCFDD-FQAA-AEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 531 ------~~g~~~~~~~-~~~~~~~~~~D-~~~~-~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
++|..|+... ...++...+.+ +... .+++.+. ..+|+++++|+|+|+||++++.++.++|++|+++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~ 175 (283)
T PLN02442 96 ADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFA 175 (283)
T ss_pred ccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEEC
Confidence 1122222111 11111111222 2222 2222222 23689999999999999999999999999999999999
Q ss_pred CcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCCh-HHHHHHHHHHh
Q psy4818 601 GALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL-HSYKFIATLQE 679 (734)
Q Consensus 601 ~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~-~~~~~~~~L~~ 679 (734)
|+.++.... .. .......+|.+. +..+.+...+|+.++.. .+.| +||+||++|..|+.. ++..++++|++
T Consensus 176 ~~~~~~~~~-~~-~~~~~~~~g~~~--~~~~~~d~~~~~~~~~~----~~~p-vli~~G~~D~~v~~~~~s~~~~~~l~~ 246 (283)
T PLN02442 176 PIANPINCP-WG-QKAFTNYLGSDK--ADWEEYDATELVSKFND----VSAT-ILIDQGEADKFLKEQLLPENFEEACKE 246 (283)
T ss_pred CccCcccCc-hh-hHHHHHHcCCCh--hhHHHcChhhhhhhccc----cCCC-EEEEECCCCccccccccHHHHHHHHHH
Confidence 998754211 00 001112234432 22333333444445433 4555 999999999999974 68999999999
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
. |.+++++++|+++|.+. ....+..+.+.|..++++
T Consensus 247 ~-------g~~~~~~~~pg~~H~~~----~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 247 A-------GAPVTLRLQPGYDHSYF----FIATFIDDHINHHAQALK 282 (283)
T ss_pred c-------CCCeEEEEeCCCCccHH----HHHHHHHHHHHHHHHHhc
Confidence 8 88999999999999875 123334445666666553
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=189.47 Aligned_cols=228 Identities=16% Similarity=0.167 Sum_probs=148.0
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCC-Cchhhhcccc--ccCCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGEL-GEDWHNAGRL--LKKQN 547 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~-g~~~~~~~~~--~~~~~ 547 (734)
.+....+.|.+ ..+++.|+||++||..+... .|. .+...|+++||.|+++|+||+|.. +..-...... .....
T Consensus 11 ~~~~~~~~p~~-~~~~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK10566 11 GIEVLHAFPAG-QRDTPLPTVFFYHGFTSSKL--VYS-YFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQ 86 (249)
T ss_pred CcceEEEcCCC-CCCCCCCEEEEeCCCCcccc--hHH-HHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHH
Confidence 45667777764 22356899999999755442 233 345677778999999999996532 1100000000 00113
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEE-cCCcchhccccccccCcccccccCCCCC
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI-LVGALDMLRFNKFTIAYYSESEFGSPNN 626 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~-~~~~~d~~~~~~~~~~~~~~~~~g~~~~ 626 (734)
..+|+.++++++.+++.+|++||+++|+|+||++++.++.++|++.++++. ..+.........+ ..... ..+..
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~ 161 (249)
T PRK10566 87 NMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLF--PPLIP---ETAAQ 161 (249)
T ss_pred HHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhc--ccccc---ccccc
Confidence 467888889999988889999999999999999999999988876444332 2332221100000 00000 00111
Q ss_pred ----HHHHHHHHhCCccCCCCCCCCCc-cCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCC--cEEEEEeCCC
Q psy4818 627 ----KTHFHNLLSYSPLHNIKVPPNNT-QYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN--PLLLRVEQDA 699 (734)
Q Consensus 627 ----~~~~~~~~~~sp~~~~~~p~~~~-~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~~ 699 (734)
.+.+..+..+++...+.. + +.| +|++||++|..||+.++.+++++|+.+ |. .+.+.+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~----i~~~P-~Lii~G~~D~~v~~~~~~~l~~~l~~~-------g~~~~~~~~~~~~~ 229 (249)
T PRK10566 162 QAEFNNIVAPLAEWEVTHQLEQ----LADRP-LLLWHGLADDVVPAAESLRLQQALRER-------GLDKNLTCLWEPGV 229 (249)
T ss_pred HHHHHHHHHHHhhcChhhhhhh----cCCCC-EEEEEcCCCCcCCHHHHHHHHHHHHhc-------CCCcceEEEecCCC
Confidence 111222344555444443 3 466 999999999999999999999999887 65 4788999999
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 700 GHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
||.+.. +....+.+||.++|
T Consensus 230 ~H~~~~------~~~~~~~~fl~~~~ 249 (249)
T PRK10566 230 RHRITP------EALDAGVAFFRQHL 249 (249)
T ss_pred CCccCH------HHHHHHHHHHHhhC
Confidence 999752 34677899999875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-19 Score=191.69 Aligned_cols=263 Identities=14% Similarity=0.088 Sum_probs=177.5
Q ss_pred CCeEEEEEEcC-CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy4818 100 ENNYFYFHNKG-LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 178 (734)
Q Consensus 100 g~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g 178 (734)
..+++|+.... ++..+.||+.+..++..+.++.... .+..++|||||++|||.+..+|. .+|+++|+.+|
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g~--~~i~i~dl~~G 233 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 233 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCCC--cEEEEEECCCC
Confidence 35677887643 3446789999877777777776432 36789999999999999865553 68999999999
Q ss_pred CcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEe
Q psy4818 179 KDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVT 258 (734)
Q Consensus 179 ~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S 258 (734)
+....+........+.|||||+.|+|+.... ...+||++++.++... .+... ......+.||
T Consensus 234 ~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-------------g~~~I~~~d~~tg~~~--~lt~~---~~~~~~~~wS 295 (429)
T PRK03629 234 AVRQVASFPRHNGAPAFSPDGSKLAFALSKT-------------GSLNLYVMDLASGQIR--QVTDG---RSNNTEPTWF 295 (429)
T ss_pred CeEEccCCCCCcCCeEECCCCCEEEEEEcCC-------------CCcEEEEEECCCCCEE--EccCC---CCCcCceEEC
Confidence 7543332222235799999999999986421 2347999999876432 22222 2234578999
Q ss_pred cCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce-EEEEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 259 DCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH-HEIIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 259 pDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
|||++|+|.+.+.. ..+||+++++++. ...+....... ...|+|||+.|+|.+...+ ...|+.+|+++
T Consensus 296 PDG~~I~f~s~~~g-~~~Iy~~d~~~g~---------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g-~~~I~~~dl~~ 364 (429)
T PRK03629 296 PDSQNLAYTSDQAG-RPQVYKVNINGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLAT 364 (429)
T ss_pred CCCCEEEEEeCCCC-CceEEEEECCCCC---------eEEeecCCCCccCEEECCCCCEEEEEEccCC-CceEEEEECCC
Confidence 99999999876532 3689999998732 23333221111 2349999999999887644 45799999987
Q ss_pred CCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 338 PCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
+. ++.|+... ........+++..+++...+.+...|+++++ +|+..+.|+...+.+..++++|
T Consensus 365 g~---~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 365 GG---VQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CC---eEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 76 45555332 1112223355566777777666678999999 6776677765556665666654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=194.03 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=173.6
Q ss_pred CCeEEEEEEcCCCC--eeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy4818 100 ENNYFYFHNKGLQN--HSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT 177 (734)
Q Consensus 100 g~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~ 177 (734)
..+++|+.+.+++. ...||+.+..+...+.|+..+. .+..++|||||++|||....+|. .+||++|+.+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~v~~p~wSpDG~~lay~s~~~g~--~~i~~~dl~~ 235 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSS-------LVLTPRFSPNRQEITYMSYANGR--PRVYLLDLET 235 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCC-------CeEeeEECCCCCEEEEEEecCCC--CEEEEEECCC
Confidence 45788888765432 5689998876777777776442 36789999999999999876654 7899999999
Q ss_pred CCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEE
Q psy4818 178 GKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV 257 (734)
Q Consensus 178 g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 257 (734)
|+....+........+.|||||+.|+|+.... ...+||++++.++... .+.. .......+.|
T Consensus 236 g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-------------g~~~Iy~~d~~~~~~~--~Lt~---~~~~~~~~~~ 297 (435)
T PRK05137 236 GQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-------------GNTDIYTMDLRSGTTT--RLTD---SPAIDTSPSY 297 (435)
T ss_pred CcEEEeecCCCcccCcEECCCCCEEEEEEecC-------------CCceEEEEECCCCceE--EccC---CCCccCceeE
Confidence 98644332222236789999999999987532 2457999999876532 2222 2223456899
Q ss_pred ecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc-eEEEEEecCCeEEEEeCCCCCCceEEEEecC
Q psy4818 258 TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH-HHEIIANNGPELIVKTTKNAPKGKVVTINLN 336 (734)
Q Consensus 258 SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 336 (734)
||||++|+|.+.+. ...+||++|++++. .+.++..... ....|+|||+.|+|.+... ..++|++++++
T Consensus 298 spDG~~i~f~s~~~-g~~~Iy~~d~~g~~---------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~ 366 (435)
T PRK05137 298 SPDGSQIVFESDRS-GSPQLYVMNADGSN---------PRRISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPD 366 (435)
T ss_pred cCCCCEEEEEECCC-CCCeEEEEECCCCC---------eEEeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECC
Confidence 99999999987543 33689999998732 2334332211 1224999999999988643 35689999987
Q ss_pred CCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeCCc---eeEEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 337 NPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQNVR---SVMDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~---~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
++. .+.+ ... .. .....+ ++++.|++.....+. ..|+++++. |...+.++. .+.+....++|
T Consensus 367 ~~~---~~~l-t~~-~~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~-g~~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 367 GSG---ERIL-TSG-FL-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT-GRNEREVPT-PGDASDPAWSP 432 (435)
T ss_pred CCc---eEec-cCC-CC-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECC-CCceEEccC-CCCccCcccCC
Confidence 654 2333 332 11 223333 455677777765554 589999995 444466653 34444455543
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=185.44 Aligned_cols=246 Identities=14% Similarity=0.070 Sum_probs=162.8
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec--ccCCCCC-
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI--RGGGELG- 533 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--rG~~~~g- 533 (734)
..+.+.+.+. -+.++++.++.|++.. .++.|+|+++||..+....+.+......++++.|++|++||. ||.+..|
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~ 90 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGE 90 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCC
Confidence 4555666664 5667889999998743 356899999999876555444333344566667999999997 6654322
Q ss_pred ---------chhhhccc-cccC-C-CchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 534 ---------EDWHNAGR-LLKK-Q-NCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 534 ---------~~~~~~~~-~~~~-~-~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
..|+.... ..+. . ...+.+...+..+++. .-+|++|++|+|+||||++++.++.++|++|+++++.+
T Consensus 91 ~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~ 170 (275)
T TIGR02821 91 DDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFA 170 (275)
T ss_pred cccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEEC
Confidence 12221110 0011 1 1123334455555554 34788999999999999999999999999999999999
Q ss_pred CcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC-hHHHHHHHHHHh
Q psy4818 601 GALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP-LHSYKFIATLQE 679 (734)
Q Consensus 601 ~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~-~~~~~~~~~L~~ 679 (734)
|+.+..... .. ...+...++.+. + .+..++|...+... ...||+||.||+.|+.|+. .++..+.++|++
T Consensus 171 ~~~~~~~~~-~~-~~~~~~~l~~~~--~---~~~~~~~~~~~~~~---~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~ 240 (275)
T TIGR02821 171 PIVAPSRCP-WG-QKAFSAYLGADE--A---AWRSYDASLLVADG---GRHSTILIDQGTADQFLDEQLRPDAFEQACRA 240 (275)
T ss_pred CccCcccCc-ch-HHHHHHHhcccc--c---chhhcchHHHHhhc---ccCCCeeEeecCCCcccCccccHHHHHHHHHH
Confidence 998754211 00 001111123221 1 12234554443321 2235599999999999999 688999999999
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+ |.++++.++|+++|+|..- .....+.+.|+.+++
T Consensus 241 ~-------g~~v~~~~~~g~~H~f~~~----~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 241 A-------GQALTLRRQAGYDHSYYFI----ASFIADHLRHHAERL 275 (275)
T ss_pred c-------CCCeEEEEeCCCCccchhH----HHhHHHHHHHHHhhC
Confidence 8 9999999999999999632 344556678877654
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-19 Score=191.36 Aligned_cols=264 Identities=15% Similarity=0.148 Sum_probs=176.9
Q ss_pred eCCeEEEEEEcC--CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 99 QENNYFYFHNKG--LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 99 ~g~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
-..+++|+.... ++....|+..+..++..+.++.... .+..++|||||++|||....++ ..+||++|++
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~-------~~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~ 231 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSRE-------PILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLD 231 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCC-------ceeeeeECCCCCEEEEEEcCCC--CCEEEEEECC
Confidence 344677766532 2345678888876666666665432 2678999999999999987654 3689999999
Q ss_pred CCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEE
Q psy4818 177 TGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256 (734)
Q Consensus 177 ~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 256 (734)
+|+....+........+.|||||+.|+|+.... ...+||++++.++... .+... ......+.
T Consensus 232 ~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-------------g~~~Iy~~d~~~~~~~--~lt~~---~~~~~~~~ 293 (430)
T PRK00178 232 TGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD-------------GNPEIYVMDLASRQLS--RVTNH---PAIDTEPF 293 (430)
T ss_pred CCCEEEccCCCCCcCCeEECCCCCEEEEEEccC-------------CCceEEEEECCCCCeE--EcccC---CCCcCCeE
Confidence 997544332222235799999999999987532 2358999999876532 22221 22334689
Q ss_pred EecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc-eEEEEEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 257 VTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH-HHEIIANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 257 ~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
|||||++|+|.+.+. ...+||++++.++. ...++..... ....|+|||+.|+|.+..++ .+.|+++|+
T Consensus 294 ~spDg~~i~f~s~~~-g~~~iy~~d~~~g~---------~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl 362 (430)
T PRK00178 294 WGKDGRTLYFTSDRG-GKPQIYKVNVNGGR---------AERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDL 362 (430)
T ss_pred ECCCCCEEEEEECCC-CCceEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEEC
Confidence 999999999987543 33689999998742 2333322111 22349999999999887544 567999999
Q ss_pred CCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 336 NNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
+++. .+.++... ... .....++++.+++....++...|+++++ +|...+.++.+.+.+...++++
T Consensus 363 ~tg~---~~~lt~~~-~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 363 QRGS---VRILTDTS-LDE-SPSVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCC---EEEccCCC-CCC-CceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 8876 35554432 211 2233356577888887778889999999 5665567765556665555554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-19 Score=190.27 Aligned_cols=260 Identities=13% Similarity=0.096 Sum_probs=174.3
Q ss_pred CeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc
Q psy4818 101 NNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 180 (734)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~ 180 (734)
++++|.....+ ...||+.+..+...+.++..+. .+..++|||||++|||.+..++. .+||++|+.+|+.
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~-------~v~~p~wSPDG~~la~~s~~~~~--~~I~~~dl~~g~~ 232 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPE-------PIISPAWSPDGTKLAYVSFESKK--PVVYVHDLATGRR 232 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCC-------CcccceEcCCCCEEEEEEccCCC--cEEEEEECCCCCE
Confidence 56777764432 4678988876556666665432 25789999999999999876543 6899999999976
Q ss_pred ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC
Q psy4818 181 YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC 260 (734)
Q Consensus 181 ~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD 260 (734)
...+........++|||||+.|+|+...+ ...+||.+++.++... .+.. +......+.||||
T Consensus 233 ~~l~~~~g~~~~~~~SPDG~~la~~~~~~-------------g~~~Iy~~d~~~~~~~--~lt~---~~~~~~~~~wSpD 294 (427)
T PRK02889 233 RVVANFKGSNSAPAWSPDGRTLAVALSRD-------------GNSQIYTVNADGSGLR--RLTQ---SSGIDTEPFFSPD 294 (427)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEccC-------------CCceEEEEECCCCCcE--ECCC---CCCCCcCeEEcCC
Confidence 44332222236799999999999986532 2458999998765432 2222 1223346889999
Q ss_pred CcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce-EEEEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH-HEIIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 261 G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
|++|+|.+.+. ...+||.++++++. .+.++...... ...|||||++|+|.++..+ .+.|+++|++++.
T Consensus 295 G~~l~f~s~~~-g~~~Iy~~~~~~g~---------~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-~~~I~v~d~~~g~ 363 (427)
T PRK02889 295 GRSIYFTSDRG-GAPQIYRMPASGGA---------AQRVTFTGSYNTSPRISPDGKLLAYISRVGG-AFKLYVQDLATGQ 363 (427)
T ss_pred CCEEEEEecCC-CCcEEEEEECCCCc---------eEEEecCCCCcCceEECCCCCEEEEEEccCC-cEEEEEEECCCCC
Confidence 99999976543 33689999987732 22333211111 2349999999999887643 4679999998765
Q ss_pred CCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 340 EKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
.+.++... .. ....+.++++.|++.....+...|+.+++ +|+..+.+..+.|.+...+++|
T Consensus 364 ---~~~lt~~~-~~-~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 364 ---VTALTDTT-RD-ESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ---eEEccCCC-Cc-cCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 35554432 11 11223345567888888888889999999 6877677766666666666664
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-19 Score=186.84 Aligned_cols=253 Identities=11% Similarity=0.115 Sum_probs=171.0
Q ss_pred eEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcE-EEEEEeCCCCceEEEEEEECCCCCc
Q psy4818 102 NYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKH-FAYCLSKSGSDWNTLHIKDVDTGKD 180 (734)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~-la~~~~~~g~~~~~l~v~dl~~g~~ 180 (734)
..|+++..+. ....||+++..+...++++... ....+.|||||++ ++|++..++. .+||++|+.+|+.
T Consensus 157 ~~~v~~~~~~-~~~~l~~~d~dg~~~~~~~~~~--------~~~~p~wSpDG~~~i~y~s~~~~~--~~Iyv~dl~tg~~ 225 (419)
T PRK04043 157 KVVFSKYTGP-KKSNIVLADYTLTYQKVIVKGG--------LNIFPKWANKEQTAFYYTSYGERK--PTLYKYNLYTGKK 225 (419)
T ss_pred EEEEEEccCC-CcceEEEECCCCCceeEEccCC--------CeEeEEECCCCCcEEEEEEccCCC--CEEEEEECCCCcE
Confidence 4555554442 3578999998777677666532 2457999999997 6666654333 5999999999986
Q ss_pred ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC
Q psy4818 181 YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC 260 (734)
Q Consensus 181 ~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD 260 (734)
...+........+.|||||+.|+|+.... ...+||++++.++... .+...+ .....+.||||
T Consensus 226 ~~lt~~~g~~~~~~~SPDG~~la~~~~~~-------------g~~~Iy~~dl~~g~~~--~LT~~~---~~d~~p~~SPD 287 (419)
T PRK04043 226 EKIASSQGMLVVSDVSKDGSKLLLTMAPK-------------GQPDIYLYDTNTKTLT--QITNYP---GIDVNGNFVED 287 (419)
T ss_pred EEEecCCCcEEeeEECCCCCEEEEEEccC-------------CCcEEEEEECCCCcEE--EcccCC---CccCccEECCC
Confidence 55443322224689999999999987532 2458999999876532 233222 12346799999
Q ss_pred CcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCC-----CCceEEEEec
Q psy4818 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNA-----PKGKVVTINL 335 (734)
Q Consensus 261 G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~-----~~~~l~~~d~ 335 (734)
|++|+|.+.+. ...+||++|++++.. ++++..... ...|||||+.|+|.+.... ..++|+++|+
T Consensus 288 G~~I~F~Sdr~-g~~~Iy~~dl~~g~~---------~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 288 DKRIVFVSDRL-GYPNIFMKKLNSGSV---------EQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred CCEEEEEECCC-CCceEEEEECCCCCe---------EeCccCCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 99999998763 347999999998432 233321111 1249999999999987542 2368999999
Q ss_pred CCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEE
Q psy4818 336 NNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQIT 400 (734)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~ 400 (734)
+++. ++.|+...... ...+.++++.+++.....+...|+.+++ +|...+.++...|.+.
T Consensus 357 ~~g~---~~~LT~~~~~~--~p~~SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~l~~~~g~~~ 415 (419)
T PRK04043 357 NSDY---IRRLTANGVNQ--FPRFSSDGGSIMFIKYLGNQSALGIIRL-NYNKSFLFPLKVGKIQ 415 (419)
T ss_pred CCCC---eEECCCCCCcC--CeEECCCCCEEEEEEccCCcEEEEEEec-CCCeeEEeecCCCccC
Confidence 8876 46666543221 2233456677888887777788999999 6765566765445543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=188.58 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=175.6
Q ss_pred eCCeEEEEEEcC--CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 99 QENNYFYFHNKG--LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 99 ~g~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
-+.+++|+...+ +.....||+.+..++..+.|+... ..+..++|||||++|||.....+. .+||++|+.
T Consensus 166 f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~-------~~v~~p~wSpDg~~la~~s~~~~~--~~l~~~dl~ 236 (433)
T PRK04922 166 FWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSA-------EPILSPAWSPDGKKLAYVSFERGR--SAIYVQDLA 236 (433)
T ss_pred ccceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCC-------CccccccCCCCCCEEEEEecCCCC--cEEEEEECC
Confidence 345678877643 233567898887666667776533 236789999999999999876543 789999999
Q ss_pred CCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEE
Q psy4818 177 TGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256 (734)
Q Consensus 177 ~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 256 (734)
+|+....+........+.|||||+.|+|+...+ ...+||++++.++... .+... ......+.
T Consensus 237 ~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-------------g~~~Iy~~d~~~g~~~--~lt~~---~~~~~~~~ 298 (433)
T PRK04922 237 TGQRELVASFRGINGAPSFSPDGRRLALTLSRD-------------GNPEIYVMDLGSRQLT--RLTNH---FGIDTEPT 298 (433)
T ss_pred CCCEEEeccCCCCccCceECCCCCEEEEEEeCC-------------CCceEEEEECCCCCeE--ECccC---CCCccceE
Confidence 988644332222235789999999999987532 2357999999876532 22221 22334689
Q ss_pred EecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc-eEEEEEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 257 VTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH-HHEIIANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 257 ~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
|||||++|+|.+.+.. ..+||++++.++. ...++..... ....|||||+.|+|.+.. ...++|+.+++
T Consensus 299 ~spDG~~l~f~sd~~g-~~~iy~~dl~~g~---------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~ 367 (433)
T PRK04922 299 WAPDGKSIYFTSDRGG-RPQIYRVAASGGS---------AERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDL 367 (433)
T ss_pred ECCCCCEEEEEECCCC-CceEEEEECCCCC---------eEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEEC
Confidence 9999999999875533 3689999998732 2333321111 123499999999998764 34568999999
Q ss_pred CCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 336 NNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
+++. .+.++... . .......++++.+++.....+...|+++++ +|...++++.+.+.+..++++|
T Consensus 368 ~~g~---~~~Lt~~~-~-~~~p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 368 STGS---VRTLTPGS-L-DESPSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCC---eEECCCCC-C-CCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCCCCCCCccCC
Confidence 8765 35454332 1 112223345567888877777889999999 5666677765555554555543
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-19 Score=182.55 Aligned_cols=238 Identities=13% Similarity=0.051 Sum_probs=162.0
Q ss_pred ceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 457 FQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 457 ~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
...+.+.+++.+| .|++.+|+|.. ...|+|||+|||...... ..+...+..+....|+.|+.+|||.+++.-
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~-- 127 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEAR-- 127 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCC--
Confidence 3577888888887 59999999963 346999999998644332 233333333333359999999999876531
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcC------CCceeEEEEcCCcchhc
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQR------PELYGAALILVGALDML 606 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~~~a~v~~~~~~d~~ 606 (734)
....++|+.++++|+.++ .-+|++||+|+|+|+||.+++.++.+. +..++++|+.+|++|+.
T Consensus 128 ---------~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 128 ---------FPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred ---------CCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 223578999999999764 236999999999999999999988642 35688999999998863
Q ss_pred cccccccCcccccccCCC---CCHHHHHHHH---------hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHH
Q psy4818 607 RFNKFTIAYYSESEFGSP---NNKTHFHNLL---------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674 (734)
Q Consensus 607 ~~~~~~~~~~~~~~~g~~---~~~~~~~~~~---------~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~ 674 (734)
.... + ..++.. ...+.++++. ..+|+.......-....||+||++|+.|+.+ .++..|+
T Consensus 199 ~~~s------~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~ 269 (318)
T PRK10162 199 DSVS------R-RLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLY 269 (318)
T ss_pred CChh------H-HHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHH
Confidence 2110 0 011100 0111111111 1233322110000024678999999999865 6899999
Q ss_pred HHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHcC
Q psy4818 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 675 ~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 726 (734)
++|+++ |++++++++++..|+|... .....+.+.++.+||.++|+
T Consensus 270 ~~L~~a-------Gv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 270 QTLAAH-------QQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHc-------CCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999999998532 22234667778899998875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=183.16 Aligned_cols=257 Identities=14% Similarity=0.076 Sum_probs=165.8
Q ss_pred CCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 453 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 453 ~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
.+..+..+...+.+.||.+|.+..+.|.+. ....|+||++||.... ..+.|.. +...|+++||.|+++|+||.|..
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~--~~~~~~VvllHG~~~~-~~~~~~~-~~~~L~~~Gy~V~~~D~rGhG~S 101 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS--SPPRALIFMVHGYGND-ISWTFQS-TAIFLAQMGFACFALDLEGHGRS 101 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC--CCCceEEEEEcCCCCC-cceehhH-HHHHHHhCCCEEEEecCCCCCCC
Confidence 445566677778889999999988887642 2457899999997433 2333332 34556667999999999997643
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 612 (734)
.. ..+....-....+|+.+++++|......+..+++|+|||+||.+++.++.++|++++++|+.+|+.++.......
T Consensus 102 ~~---~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 178 (330)
T PLN02298 102 EG---LRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPP 178 (330)
T ss_pred CC---ccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCc
Confidence 21 111001112236788889998876543444579999999999999999999999999999999876533211000
Q ss_pred --------cCccccccc-CCC---------CCHHHHHHHHhCCcc----------------------CCCCCCCCCccCC
Q psy4818 613 --------IAYYSESEF-GSP---------NNKTHFHNLLSYSPL----------------------HNIKVPPNNTQYP 652 (734)
Q Consensus 613 --------~~~~~~~~~-g~~---------~~~~~~~~~~~~sp~----------------------~~~~~p~~~~~~P 652 (734)
....+.... ..+ ... ....+...+|. .++.. ++.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P 253 (330)
T PLN02298 179 WPIPQILTFVARFLPTLAIVPTADLLEKSVKVP-AKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKD----VSIP 253 (330)
T ss_pred hHHHHHHHHHHHHCCCCccccCCCcccccccCH-HHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhh----cCCC
Confidence 000000000 000 000 00111111221 11222 6677
Q ss_pred cEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC--chHHhHHHHHHHHHHHHHHcCCCCC
Q psy4818 653 ATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT--PLMKSIEEMTDIYVFLMKSLGLKYY 730 (734)
Q Consensus 653 ~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~~~~~ 730 (734)
+||+||++|..||+.++.+++++++.. ..++++++++||.... +..........+.+||.++++....
T Consensus 254 -vLii~G~~D~ivp~~~~~~l~~~i~~~---------~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~~~ 323 (330)
T PLN02298 254 -FIVLHGSADVVTDPDVSRALYEEAKSE---------DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGKAT 323 (330)
T ss_pred -EEEEecCCCCCCCHHHHHHHHHHhccC---------CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999998887532 3578899999998753 3222245667789999999987655
Q ss_pred C
Q psy4818 731 P 731 (734)
Q Consensus 731 ~ 731 (734)
|
T Consensus 324 ~ 324 (330)
T PLN02298 324 P 324 (330)
T ss_pred C
Confidence 5
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=187.98 Aligned_cols=238 Identities=14% Similarity=0.051 Sum_probs=156.1
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
.+..+.+.++..||..|+++++.|+. +++.|+||+ |||.++.....|.. +...|+++||+|+++|+||.|+...
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~---~~~~P~Vli-~gG~~~~~~~~~~~-~~~~La~~Gy~vl~~D~pG~G~s~~- 238 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG---DGPFPTVLV-CGGLDSLQTDYYRL-FRDYLAPRGIAMLTIDMPSVGFSSK- 238 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC---CCCccEEEE-eCCcccchhhhHHH-HHHHHHhCCCEEEEECCCCCCCCCC-
Confidence 44688999998888889999999973 467888776 45555433333332 4566777899999999999664321
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc--c-c
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK--F-T 612 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~--~-~ 612 (734)
+. ..........+++++|.+...+|++||+++|+|+||++++.++..+|++++++|+..|+++...... . .
T Consensus 239 ~~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~ 312 (414)
T PRK05077 239 WK------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQ 312 (414)
T ss_pred CC------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhh
Confidence 10 0111112235788999888889999999999999999999999988999999999998875221110 0 0
Q ss_pred cCc----ccccccCCCC-CH-HHHHHHHhCCccC--CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCC
Q psy4818 613 IAY----YSESEFGSPN-NK-THFHNLLSYSPLH--NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSL 684 (734)
Q Consensus 613 ~~~----~~~~~~g~~~-~~-~~~~~~~~~sp~~--~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~ 684 (734)
... .+...+|.+. +. .....+..++.-. .+.. +++.| +|+++|++|++||++++..+.+...
T Consensus 313 ~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~---~i~~P-vLiI~G~~D~ivP~~~a~~l~~~~~------ 382 (414)
T PRK05077 313 VPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGR---RCPTP-MLSGYWKNDPFSPEEDSRLIASSSA------ 382 (414)
T ss_pred chHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhcc---CCCCc-EEEEecCCCCCCCHHHHHHHHHhCC------
Confidence 000 0111233322 21 2222333333211 1111 26777 9999999999999999886655433
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 685 PYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 685 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
..+++++|++ |.+.. ..+....+.+||.++|
T Consensus 383 -----~~~l~~i~~~-~~~e~----~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 383 -----DGKLLEIPFK-PVYRN----FDKALQEISDWLEDRL 413 (414)
T ss_pred -----CCeEEEccCC-CccCC----HHHHHHHHHHHHHHHh
Confidence 3367888887 43332 2466777899999886
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-18 Score=180.75 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=149.4
Q ss_pred cCCcEEeCCe-EEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEE
Q psy4818 93 YSAPQRQENN-YFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 171 (734)
Q Consensus 93 ~~~p~~~g~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~ 171 (734)
.+.|+|||++ +||..+.++. +.||+.+..+++.+.|++.... ...+.|||||++|+|+.+..|+ .+||
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~--~~Iyv~dl~tg~~~~lt~~~g~-------~~~~~~SPDG~~la~~~~~~g~--~~Iy 260 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERK--PTLYKYNLYTGKKEKIASSQGM-------LVVSDVSKDGSKLLLTMAPKGQ--PDIY 260 (419)
T ss_pred eEEECCCCCcEEEEEEccCCC--CEEEEEECCCCcEEEEecCCCc-------EEeeEECCCCCEEEEEEccCCC--cEEE
Confidence 4666799996 7887776433 5799999888888888764321 3568899999999999987664 7999
Q ss_pred EEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCee
Q psy4818 172 IKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSL 251 (734)
Q Consensus 172 v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~ 251 (734)
++|+++|+..+.+........+.|||||++|+|++... ...+||++++.++..+. +.+.. . +
T Consensus 261 ~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~-------------g~~~Iy~~dl~~g~~~r-lt~~g-~---~ 322 (419)
T PRK04043 261 LYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL-------------GYPNIFMKKLNSGSVEQ-VVFHG-K---N 322 (419)
T ss_pred EEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC-------------CCceEEEEECCCCCeEe-CccCC-C---c
Confidence 99999998655554433235789999999999998632 23589999998876432 22221 1 1
Q ss_pred EEEEEEecCCcEEEEEEecCC-----CCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCC
Q psy4818 252 GLHSEVTDCGRYLLVSTSNNT-----QGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAP 326 (734)
Q Consensus 252 ~~~~~~SpDG~~l~~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~ 326 (734)
...|||||++|++...... ...+||++|++++. .+.|+.........|+|||+.|+|.++. +.
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---------~~~LT~~~~~~~p~~SPDG~~I~f~~~~-~~ 390 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---------IRRLTANGVNQFPRFSSDGGSIMFIKYL-GN 390 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---------eEECCCCCCcCCeEECCCCCEEEEEEcc-CC
Confidence 2589999999999876532 12689999998843 3444433222224599999999999886 44
Q ss_pred CceEEEEecCCCC
Q psy4818 327 KGKVVTINLNNPC 339 (734)
Q Consensus 327 ~~~l~~~d~~~~~ 339 (734)
...|+.+++++..
T Consensus 391 ~~~L~~~~l~g~~ 403 (419)
T PRK04043 391 QSALGIIRLNYNK 403 (419)
T ss_pred cEEEEEEecCCCe
Confidence 6679999998764
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-19 Score=175.06 Aligned_cols=205 Identities=21% Similarity=0.270 Sum_probs=140.4
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCC-CCchhhhc--ccccc----
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGE-LGEDWHNA--GRLLK---- 544 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~-~g~~~~~~--~~~~~---- 544 (734)
|.+++..|++ .++.|.||++|+.+|.. .+...++..|+++||.|++||+-++.. ......+. .....
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~~---~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGLN---PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPR 74 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS----HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHS
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCCc---hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhh
Confidence 5789999987 26899999999988766 233345677888999999999876555 11111111 00000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCC
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSP 624 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~ 624 (734)
.....+|+.+++++|.++..++++||+++|+|+||.+++.++.+. +.++++|+..|... +
T Consensus 75 ~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~-------------------~ 134 (218)
T PF01738_consen 75 PEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP-------------------P 134 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS-------------------G
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC-------------------C
Confidence 123457888999999998878999999999999999999999876 57899999888000 0
Q ss_pred CCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCC
Q psy4818 625 NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 625 ~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~ 704 (734)
.. +...... ++.| +|+++|++|+.++.++..++.++|++. +.++++++|++++|+|.
T Consensus 135 ~~-----------~~~~~~~----~~~P-~l~~~g~~D~~~~~~~~~~~~~~l~~~-------~~~~~~~~y~ga~HgF~ 191 (218)
T PF01738_consen 135 PP-----------PLEDAPK----IKAP-VLILFGENDPFFPPEEVEALEEALKAA-------GVDVEVHVYPGAGHGFA 191 (218)
T ss_dssp GG-----------HHHHGGG------S--EEEEEETT-TTS-HHHHHHHHHHHHCT-------TTTEEEEEETT--TTTT
T ss_pred Cc-----------chhhhcc----cCCC-EeecCccCCCCCChHHHHHHHHHHHhc-------CCcEEEEECCCCccccc
Confidence 00 0000111 4555 999999999999999999999999988 89999999999999997
Q ss_pred Cch------HHhHHHHHHHHHHHHHHc
Q psy4818 705 TPL------MKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 705 ~~~------~~~~~~~~~~~~fl~~~l 725 (734)
... ....+.+.++++||.++|
T Consensus 192 ~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 192 NPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 432 223567788999998876
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=177.33 Aligned_cols=244 Identities=22% Similarity=0.231 Sum_probs=156.0
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
...+.+..+.|.+.+|..|.++++.|++. .++.|+||.+||..+....+ . .... ++.+||+|+.+|.||-|+..
T Consensus 51 ~~~~~vy~v~f~s~~g~~V~g~l~~P~~~--~~~~Pavv~~hGyg~~~~~~--~-~~~~-~a~~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 51 TPGVEVYDVSFESFDGSRVYGWLYRPKNA--KGKLPAVVQFHGYGGRSGDP--F-DLLP-WAAAGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp BSSEEEEEEEEEEGGGEEEEEEEEEES-S--SSSEEEEEEE--TT--GGGH--H-HHHH-HHHTT-EEEEE--TTTSSSS
T ss_pred CCCEEEEEEEEEccCCCEEEEEEEecCCC--CCCcCEEEEecCCCCCCCCc--c-cccc-cccCCeEEEEecCCCCCCCC
Confidence 35668899999999999999999999953 58999999999864442221 1 1223 45579999999999976443
Q ss_pred chhhh-----------ccccccC-----CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEE
Q psy4818 534 EDWHN-----------AGRLLKK-----QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAAL 597 (734)
Q Consensus 534 ~~~~~-----------~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v 597 (734)
.+... .+..... ...+.|.+.++++|.+...+|++||+++|.|.||.+++++++..| ++++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~ 203 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAA 203 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEE
Confidence 33221 1111101 123689999999999999999999999999999999999999987 579999
Q ss_pred EcCCcc-hhcccccccc-Ccccc--ccc---CCC--C-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC
Q psy4818 598 ILVGAL-DMLRFNKFTI-AYYSE--SEF---GSP--N-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP 667 (734)
Q Consensus 598 ~~~~~~-d~~~~~~~~~-~~~~~--~~~---g~~--~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~ 667 (734)
+.+|++ |+........ ...|. ..| ..+ . .++.++.|.=++....++. +++| +|+..|..|+.|||
T Consensus 204 ~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~r----i~~p-vl~~~gl~D~~cPP 278 (320)
T PF05448_consen 204 ADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARR----IKCP-VLFSVGLQDPVCPP 278 (320)
T ss_dssp EESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG------SE-EEEEEETT-SSS-H
T ss_pred ecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHH----cCCC-EEEEEecCCCCCCc
Confidence 999954 5444332221 11110 111 112 2 2344555554555555554 8888 99999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
.-....+++|. .+.++.+||..||...... ...+.+.||.+|
T Consensus 279 ~t~fA~yN~i~----------~~K~l~vyp~~~He~~~~~-----~~~~~~~~l~~~ 320 (320)
T PF05448_consen 279 STQFAAYNAIP----------GPKELVVYPEYGHEYGPEF-----QEDKQLNFLKEH 320 (320)
T ss_dssp HHHHHHHCC------------SSEEEEEETT--SSTTHHH-----HHHHHHHHHHH-
T ss_pred hhHHHHHhccC----------CCeeEEeccCcCCCchhhH-----HHHHHHHHHhcC
Confidence 99888888774 3579999999999875322 234568898875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=168.12 Aligned_cols=195 Identities=11% Similarity=0.109 Sum_probs=131.1
Q ss_pred EEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc--hhhhccccccCCCchhH
Q psy4818 474 MYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE--DWHNAGRLLKKQNCFDD 551 (734)
Q Consensus 474 ~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~--~~~~~~~~~~~~~~~~D 551 (734)
+++|.|++. +++.|+||++||+.+..........+..++.+.||+|++||+||++..+. .|..............|
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 468889874 46799999999987654322211124566667899999999999765443 33333222223456788
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHH
Q psy4818 552 FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFH 631 (734)
Q Consensus 552 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~ 631 (734)
+...++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.++..-.... . ..... .....+.....+.
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~-~--~~~~~-~~~~~~~~~~~~~ 154 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS-S--SISAT-PQMCTAATAASVC 154 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc-c--chhhH-hhcCCCCCHHHHH
Confidence 889999999887799999999999999999999999999999999888875421110 0 00000 1111112222222
Q ss_pred HH-HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q psy4818 632 NL-LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681 (734)
Q Consensus 632 ~~-~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~ 681 (734)
.+ .... .... ...|+++|+||.+|.+||+..+.+++++|++.+
T Consensus 155 ~~~~~~~--~~~~-----~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~~ 198 (212)
T TIGR01840 155 RLVRGMQ--SEYN-----GPTPIMSVVHGDADYTVLPGNADEIRDAMLKVY 198 (212)
T ss_pred HHHhccC--Cccc-----CCCCeEEEEEcCCCceeCcchHHHHHHHHHHhc
Confidence 22 2111 1111 345668999999999999999999999999884
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=179.30 Aligned_cols=242 Identities=11% Similarity=0.098 Sum_probs=166.2
Q ss_pred CcEEEEEEeCCCCc--eEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEE
Q psy4818 153 GKHFAYCLSKSGSD--WNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYH 230 (734)
Q Consensus 153 G~~la~~~~~~g~~--~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (734)
..+|||+...+|++ ..+||++|.+++.....+........+.|||||+.|+|++... ...+||++
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~-------------g~~~i~~~ 231 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN-------------GRPRVYLL 231 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC-------------CCCEEEEE
Confidence 56899998876633 5799999998776554444433346899999999999998632 23589999
Q ss_pred ECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE-EE
Q psy4818 231 VLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH-EI 309 (734)
Q Consensus 231 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~-~~ 309 (734)
++.++... .+... .+....+.|||||+.|++..... ...+||++|++++. ...++....... ..
T Consensus 232 dl~~g~~~--~l~~~---~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~---------~~~Lt~~~~~~~~~~ 296 (435)
T PRK05137 232 DLETGQRE--LVGNF---PGMTFAPRFSPDGRKVVMSLSQG-GNTDIYTMDLRSGT---------TTRLTDSPAIDTSPS 296 (435)
T ss_pred ECCCCcEE--EeecC---CCcccCcEECCCCCEEEEEEecC-CCceEEEEECCCCc---------eEEccCCCCccCcee
Confidence 99877532 23222 22345789999999999887543 34789999998843 233433222222 34
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCcee
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~ 389 (734)
|+|||++|+|.+++.+ ..+||++|++++. .+.++... .........++++.|++.....+...|+++++.++. .
T Consensus 297 ~spDG~~i~f~s~~~g-~~~Iy~~d~~g~~---~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~ 370 (435)
T PRK05137 297 YSPDGSQIVFESDRSG-SPQLYVMNADGSN---PRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E 370 (435)
T ss_pred EcCCCCEEEEEECCCC-CCeEEEEECCCCC---eEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e
Confidence 9999999999998754 4579999998765 45565443 222222334566777777765666789999995444 4
Q ss_pred eeeCCCCceEEeeccCcccceEEEEEecCCCC--ceEEEEeC
Q psy4818 390 HSFPLDLGQITHISGRRKYNEVFYGFTSFLQP--GTIYHCNI 429 (734)
Q Consensus 390 ~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P--~~~~~~d~ 429 (734)
+.++.. ..+..++++||++.+++........ ..+|.+|+
T Consensus 371 ~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 371 RILTSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred EeccCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 566543 2355678899999998877655443 57999999
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-17 Score=175.51 Aligned_cols=252 Identities=14% Similarity=0.141 Sum_probs=166.3
Q ss_pred eEEeCCCCcEEEEEEeCCCCc----eEEEEEEECCCCCcccccccccccCeeEEEcCCcE--EEEEEEecCCCCCCCCcc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSD----WNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG--FFYNQYCDINGTADGTET 219 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~----~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~--l~y~~~~~~~~~~~~~~~ 219 (734)
...++ +++|||+....+.+ .+.||++|.+++...+.+........+.|||||++ |+|++...
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~---------- 208 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL---------- 208 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC----------
Confidence 35555 99999998765422 46899999999887665554443468999999988 55676532
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEE--eCCCCCCCcccCCCCce
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYF--DLHSLPDGKISGKFPLK 297 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~--d~~~~~~~~l~~~~~~~ 297 (734)
...+||+++++++... .+...+. ....+.|||||++|+|...... ..++|+. ++.++.. ...+
T Consensus 209 ---g~~~I~~~~l~~g~~~--~lt~~~g---~~~~p~wSPDG~~Laf~s~~~g-~~di~~~~~~~~~g~~------g~~~ 273 (428)
T PRK01029 209 ---GVPKIFLGSLENPAGK--KILALQG---NQLMPTFSPRKKLLAFISDRYG-NPDLFIQSFSLETGAI------GKPR 273 (428)
T ss_pred ---CCceEEEEECCCCCce--EeecCCC---CccceEECCCCCEEEEEECCCC-CcceeEEEeecccCCC------Ccce
Confidence 2358999999987644 3333222 2346899999999999875432 3467774 5554211 1233
Q ss_pred eeecccc-c-eEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 298 TVIPGMD-H-HHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 298 ~l~~~~~-~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
.++.+.. . ....|||||++|+|.+++++ ..+||.+++++... ..+.++... .........++++.|++....++.
T Consensus 274 ~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g-~~~ly~~~~~~~g~-~~~~lt~~~-~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 274 RLLNEAFGTQGNPSFSPDGTRLVFVSNKDG-RPRIYIMQIDPEGQ-SPRLLTKKY-RNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred EeecCCCCCcCCeEECCCCCEEEEEECCCC-CceEEEEECccccc-ceEEeccCC-CCccceeECCCCCEEEEEEcCCCC
Confidence 4443321 2 12349999999999998754 45799998853210 124444433 222233344666788888777777
Q ss_pred eeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 376 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+|+++|+.+|+. +.++...+.+..+.+++|++.+++..... ....+|.+|+
T Consensus 351 ~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl 402 (428)
T PRK01029 351 RQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISL 402 (428)
T ss_pred cEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEEC
Confidence 8999999987765 56664434455678899999888876543 3467999999
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-17 Score=174.72 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=174.3
Q ss_pred HHHHHHHhccCCccCCcEEeCCeEEEEEEcC-CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEE
Q psy4818 80 IKEQLLRMANYEKYSAPQRQENNYFYFHNKG-LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAY 158 (734)
Q Consensus 80 l~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~ 158 (734)
+..++...+.+.-...+-.-+.+++|+..+. +.....||+.+..+...++|+..+ ..+..++|||||++|||
T Consensus 148 ~ah~~~d~i~~~ltg~~g~f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-------~~v~~p~wSPDG~~la~ 220 (429)
T PRK01742 148 GAHTVSDEVFEKLTAIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-------QPLMSPAWSPDGSKLAY 220 (429)
T ss_pred HHHHHHHHHHHHHcCCCCccCCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-------CccccceEcCCCCEEEE
Confidence 3344444433333333445567888887653 233478888887666666665533 23678999999999999
Q ss_pred EEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC
Q psy4818 159 CLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 159 ~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~ 238 (734)
+...++ ..+||++|+.+|+.............++|||||+.|+|+...+ ...+||.+++.++...
T Consensus 221 ~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-------------g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 221 VSFENK--KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD-------------GVLNIYVMGANGGTPS 285 (429)
T ss_pred EEecCC--CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC-------------CcEEEEEEECCCCCeE
Confidence 886543 4789999999987433221111225799999999999987422 2347999998765422
Q ss_pred CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEE
Q psy4818 239 DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318 (734)
Q Consensus 239 ~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~ 318 (734)
.+.. +......+.|||||++|++.+.+. ...+||.++..++. .. ++.... ....|+|||+.|+
T Consensus 286 --~lt~---~~~~~~~~~wSpDG~~i~f~s~~~-g~~~I~~~~~~~~~---------~~-~l~~~~-~~~~~SpDG~~ia 348 (429)
T PRK01742 286 --QLTS---GAGNNTEPSWSPDGQSILFTSDRS-GSPQVYRMSASGGG---------AS-LVGGRG-YSAQISADGKTLV 348 (429)
T ss_pred --eecc---CCCCcCCEEECCCCCEEEEEECCC-CCceEEEEECCCCC---------eE-EecCCC-CCccCCCCCCEEE
Confidence 2222 222345789999999999987543 33689999887621 11 222111 1123999999998
Q ss_pred EEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCce
Q psy4818 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQ 398 (734)
Q Consensus 319 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~ 398 (734)
+.+. ..++.+|+.++. ++.++...... .....++++.+++...+++...++++++ +|+.+++|+...+.
T Consensus 349 ~~~~-----~~i~~~Dl~~g~---~~~lt~~~~~~--~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~ 417 (429)
T PRK01742 349 MING-----DNVVKQDLTSGS---TEVLSSTFLDE--SPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQ 417 (429)
T ss_pred EEcC-----CCEEEEECCCCC---eEEecCCCCCC--CceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCC
Confidence 8754 248889998765 34444332111 1122345456666665555556777777 78877888765566
Q ss_pred EEeeccCc
Q psy4818 399 ITHISGRR 406 (734)
Q Consensus 399 v~~~~~~~ 406 (734)
+..++++|
T Consensus 418 ~~~p~wsp 425 (429)
T PRK01742 418 VKFPAWSP 425 (429)
T ss_pred CCCcccCC
Confidence 65666665
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=162.44 Aligned_cols=216 Identities=20% Similarity=0.261 Sum_probs=163.8
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh-h
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH-N 538 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~-~ 538 (734)
+.+.+++.| .++++++.+|++ .++.|+||.+|+-+|... +...+...|+.+||+|++||+-+..+...... .
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~---~~~~P~VIv~hei~Gl~~---~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~ 75 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG---AGGFPGVIVLHEIFGLNP---HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDE 75 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc---CCCCCEEEEEecccCCch---HHHHHHHHHHhCCcEEEechhhccCCCCCccccc
Confidence 456677766 789999999987 345599999999877654 33346678888999999999966322222211 1
Q ss_pred cccccc-------CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc
Q psy4818 539 AGRLLK-------KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF 611 (734)
Q Consensus 539 ~~~~~~-------~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~ 611 (734)
...... ......|+.++++||..+..++++||+++|+|+||.+++.++.+.| .++|+|+..|..-..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~----- 149 (236)
T COG0412 76 PAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD----- 149 (236)
T ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC-----
Confidence 101111 1456789999999999998899999999999999999999999877 679999988743100
Q ss_pred ccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcE
Q psy4818 612 TIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPL 691 (734)
Q Consensus 612 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~ 691 (734)
. + ....+ +++| +|+..|+.|..+|.....++.++|.++ ++.+
T Consensus 150 -----~--------------------~-~~~~~----~~~p-vl~~~~~~D~~~p~~~~~~~~~~~~~~-------~~~~ 191 (236)
T COG0412 150 -----D--------------------T-ADAPK----IKVP-VLLHLAGEDPYIPAADVDALAAALEDA-------GVKV 191 (236)
T ss_pred -----c--------------------c-ccccc----ccCc-EEEEecccCCCCChhHHHHHHHHHHhc-------CCCe
Confidence 0 0 00112 5666 999999999999999999999999988 7889
Q ss_pred EEEEeCCCCCCCCCch---------HHhHHHHHHHHHHHHHHcC
Q psy4818 692 LLRVEQDAGHGQGTPL---------MKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 692 ~~~~~~~~gH~~~~~~---------~~~~~~~~~~~~fl~~~l~ 726 (734)
.+.+|+++.|+|.... ....+.++++++||.++++
T Consensus 192 ~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 192 DLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred eEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999997431 2235678889999999886
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=156.26 Aligned_cols=246 Identities=18% Similarity=0.184 Sum_probs=166.4
Q ss_pred CCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCC
Q psy4818 452 FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGE 531 (734)
Q Consensus 452 ~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~ 531 (734)
+.....++-+++|++.+|.+|.+|+++|+.. .++.|+||..||-.+....+ ..++.|-+ .||+|+.+|.||-|+
T Consensus 49 ~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~--~~~~P~vV~fhGY~g~~g~~---~~~l~wa~-~Gyavf~MdvRGQg~ 122 (321)
T COG3458 49 FTLPRVEVYDVTFTGYGGARIKGWLVLPRHE--KGKLPAVVQFHGYGGRGGEW---HDMLHWAV-AGYAVFVMDVRGQGS 122 (321)
T ss_pred ccCCceEEEEEEEeccCCceEEEEEEeeccc--CCccceEEEEeeccCCCCCc---cccccccc-cceeEEEEecccCCC
Confidence 3344567889999999999999999999863 48999999999854444322 12344544 699999999999655
Q ss_pred CCc------------hhhhccccccC-----CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCcee
Q psy4818 532 LGE------------DWHNAGRLLKK-----QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYG 594 (734)
Q Consensus 532 ~g~------------~~~~~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~ 594 (734)
+-. .|.-.|..+.+ ...+.|...+++-|.+...+|++||++.|+|.||.+++++++..| +.+
T Consensus 123 ~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik 201 (321)
T COG3458 123 SSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIK 201 (321)
T ss_pred ccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhh
Confidence 521 12222222211 245899999999999999999999999999999999999999987 679
Q ss_pred EEEEcCCcch-hccccccccCccc------ccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC
Q psy4818 595 AALILVGALD-MLRFNKFTIAYYS------ESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP 667 (734)
Q Consensus 595 a~v~~~~~~d-~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~ 667 (734)
++++.+|++. ..+.........+ ..... |...+.++.|.-++- .|... +++.| +|+..|..|++|||
T Consensus 202 ~~~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~-~~e~~v~~TL~yfD~-~n~A~---RiK~p-vL~svgL~D~vcpP 275 (321)
T COG3458 202 AVVADYPFLSDFPRAIELATEGPYDEIQTYFKRHD-PKEAEVFETLSYFDI-VNLAA---RIKVP-VLMSVGLMDPVCPP 275 (321)
T ss_pred cccccccccccchhheeecccCcHHHHHHHHHhcC-chHHHHHHHHhhhhh-hhHHH---hhccc-eEEeecccCCCCCC
Confidence 9999999864 2222221111111 11112 223334443332222 23333 37888 99999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
.-...++++|.. +.++.+||.-+|....... ..+++.|+....
T Consensus 276 stqFA~yN~l~~----------~K~i~iy~~~aHe~~p~~~-----~~~~~~~l~~l~ 318 (321)
T COG3458 276 STQFAAYNALTT----------SKTIEIYPYFAHEGGPGFQ-----SRQQVHFLKILF 318 (321)
T ss_pred hhhHHHhhcccC----------CceEEEeeccccccCcchh-----HHHHHHHHHhhc
Confidence 998888888743 3467788888897654322 123456665443
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=174.29 Aligned_cols=249 Identities=14% Similarity=0.065 Sum_probs=152.2
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
++..++..+...||.++.+..+.|++ ..+.|+||++||..+... .|...+...|+++||.|+++|+||.|.....
T Consensus 58 ~~~~~~~~~~~~~g~~l~~~~~~p~~---~~~~~~iv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 58 GIKTEESYEVNSRGVEIFSKSWLPEN---SRPKAAVCFCHGYGDTCT--FFFEGIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred CcceeeeeEEcCCCCEEEEEEEecCC---CCCCeEEEEECCCCCccc--hHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 34445555566799999998888864 246789999999644321 1222344566667999999999996643210
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc------
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN------ 609 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~------ 609 (734)
.+....-....+|+.+.++.+..+...+..++.|+|||+||++++.++.++|++++++|+.+|+.......
T Consensus 133 ---~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~ 209 (349)
T PLN02385 133 ---HGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLV 209 (349)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHH
Confidence 00000011124455556666544333445689999999999999999999999999999998865321100
Q ss_pred -----------ccc--cCcccccc--cCCCC-----------------CHHHHHHHHhCCc-cCCCCCCCCCccCCcEEE
Q psy4818 610 -----------KFT--IAYYSESE--FGSPN-----------------NKTHFHNLLSYSP-LHNIKVPPNNTQYPATLV 656 (734)
Q Consensus 610 -----------~~~--~~~~~~~~--~g~~~-----------------~~~~~~~~~~~sp-~~~~~~p~~~~~~P~~Li 656 (734)
... ........ +..+. -......+..... ...+.. ++.| +||
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~----i~~P-~Li 284 (349)
T PLN02385 210 LQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEE----VSLP-LLI 284 (349)
T ss_pred HHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhccc----CCCC-EEE
Confidence 000 00000000 00000 0000111111001 112222 6777 999
Q ss_pred EecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCch--HHhHHHHHHHHHHHHHHcC
Q psy4818 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL--MKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 657 ~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~--~~~~~~~~~~~~fl~~~l~ 726 (734)
+||++|..|++..+.++++++... ..++++++++||...... ....+.+..+++||.+++.
T Consensus 285 i~G~~D~vv~~~~~~~l~~~~~~~---------~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 285 LHGEADKVTDPSVSKFLYEKASSS---------DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred EEeCCCCccChHHHHHHHHHcCCC---------CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999988877432 357888999999875322 2123477889999998874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-16 Score=169.40 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=161.4
Q ss_pred cEEEEEEeCCC-CceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEEC
Q psy4818 154 KHFAYCLSKSG-SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVL 232 (734)
Q Consensus 154 ~~la~~~~~~g-~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l 232 (734)
++|||+....+ ...++||++|.+++.....+........+.|||||+.|+|++... ...+||++++
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~-------------g~~~i~i~dl 230 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------------GRSALVIQTL 230 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC-------------CCcEEEEEEC
Confidence 78999987543 335799999999876554444443346899999999999987532 2347999999
Q ss_pred CCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE-EEEE
Q psy4818 233 GTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH-EIIA 311 (734)
Q Consensus 233 ~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~-~~~s 311 (734)
.++..+ .+...+. ....+.|||||++|++..... ...+||++|++++. ...++....... ..|+
T Consensus 231 ~~G~~~--~l~~~~~---~~~~~~~SPDG~~La~~~~~~-g~~~I~~~d~~tg~---------~~~lt~~~~~~~~~~wS 295 (429)
T PRK03629 231 ANGAVR--QVASFPR---HNGAPAFSPDGSKLAFALSKT-GSLNLYVMDLASGQ---------IRQVTDGRSNNTEPTWF 295 (429)
T ss_pred CCCCeE--EccCCCC---CcCCeEECCCCCEEEEEEcCC-CCcEEEEEECCCCC---------EEEccCCCCCcCceEEC
Confidence 876532 2322222 234689999999999976542 33689999998842 233443322222 2499
Q ss_pred ecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeee
Q psy4818 312 NNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHS 391 (734)
Q Consensus 312 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~ 391 (734)
|||++|+|.+++.+ ..+||.++++++. .+.++... .........++++.+++....++...|+++|+.+|+. +.
T Consensus 296 PDG~~I~f~s~~~g-~~~Iy~~d~~~g~---~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~ 369 (429)
T PRK03629 296 PDSQNLAYTSDQAG-RPQVYKVNINGGA---PQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QV 369 (429)
T ss_pred CCCCEEEEEeCCCC-CceEEEEECCCCC---eEEeecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EE
Confidence 99999999998754 4579999998765 35554433 2222223345656787777777777899999977764 66
Q ss_pred eCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 392 FPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 392 l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.. ......+++||++.+++....- .-..++.+++
T Consensus 370 Lt~~-~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~~~~ 405 (429)
T PRK03629 370 LTDT-FLDETPSIAPNGTMVIYSSSQG-MGSVLNLVST 405 (429)
T ss_pred eCCC-CCCCCceECCCCCEEEEEEcCC-CceEEEEEEC
Confidence 6643 2233577889998887765532 2356888888
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-18 Score=154.24 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=151.4
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..-.||++||.-|++..- .....+|.++||.|.+|+|||+|-..+.|-..+..+| ++|+.++.++|.+.++
T Consensus 13 ~G~~AVLllHGFTGt~~Dv---r~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy- 84 (243)
T COG1647 13 GGNRAVLLLHGFTGTPRDV---RMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY- 84 (243)
T ss_pred cCCEEEEEEeccCCCcHHH---HHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC-
Confidence 3447889999976665432 2356788889999999999999988888888887777 8899999999998887
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-ccccCcccc---cccCCCCCHHHHHHHHhCC--cc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN-KFTIAYYSE---SEFGSPNNKTHFHNLLSYS--PL 639 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~-~~~~~~~~~---~~~g~~~~~~~~~~~~~~s--p~ 639 (734)
+.|+|.|.|+||.+++.++.++| .+++|..++-+...+.. ....--.|. +.|-.+..++.-+.++++. |.
T Consensus 85 --~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~ 160 (243)
T COG1647 85 --DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPM 160 (243)
T ss_pred --CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchH
Confidence 57999999999999999999998 46666555433322110 000000111 2222233222233444444 21
Q ss_pred --------------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4818 640 --------------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 640 --------------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 705 (734)
.++.. |..| +||++|.+|+.||...+..++..+... +.+|..|.++||-+..
T Consensus 161 ~~~~~~~~~i~~~~~~~~~----I~~p-t~vvq~~~D~mv~~~sA~~Iy~~v~s~---------~KeL~~~e~SgHVIt~ 226 (243)
T COG1647 161 TTTAQLKKLIKDARRSLDK----IYSP-TLVVQGRQDEMVPAESANFIYDHVESD---------DKELKWLEGSGHVITL 226 (243)
T ss_pred HHHHHHHHHHHHHHhhhhh----cccc-hhheecccCCCCCHHHHHHHHHhccCC---------cceeEEEccCCceeec
Confidence 23443 6667 999999999999999999999887644 6689999999999987
Q ss_pred chHHhHHHHHHHHHHHH
Q psy4818 706 PLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 706 ~~~~~~~~~~~~~~fl~ 722 (734)
... +....+.++.||.
T Consensus 227 D~E-rd~v~e~V~~FL~ 242 (243)
T COG1647 227 DKE-RDQVEEDVITFLE 242 (243)
T ss_pred chh-HHHHHHHHHHHhh
Confidence 655 3677888999986
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=170.80 Aligned_cols=228 Identities=20% Similarity=0.207 Sum_probs=159.0
Q ss_pred EcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc-HHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 465 RSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS-ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 465 ~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
...++..+++.+|.| ......+.|+|||+|||.......... ..+..++...|+.|+.+|||-..+.
T Consensus 57 ~~~~~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~----------- 124 (312)
T COG0657 57 AGPSGDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH----------- 124 (312)
T ss_pred cCCCCCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------
Confidence 344566789999999 323356789999999996554433333 4456677778999999999987764
Q ss_pred cCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchhccccccccCcc
Q psy4818 544 KKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDMLRFNKFTIAYY 616 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~~~~~~~~~~~~ 616 (734)
.-...++|+.+++.|+.++. -+||++|+|+|+|+||.|++.++.+..+ ..++.+..+|.+|... .....
T Consensus 125 ~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~~~~~--- 200 (312)
T COG0657 125 PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-SAASL--- 200 (312)
T ss_pred CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-cccch---
Confidence 23445789999999999874 3899999999999999999998865432 4589999999998875 11000
Q ss_pred cccccCC--CCCHHHHH-----HH---------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q psy4818 617 SESEFGS--PNNKTHFH-----NL---------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680 (734)
Q Consensus 617 ~~~~~g~--~~~~~~~~-----~~---------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~ 680 (734)
..++. ........ .+ ...+|+..... ...||+||++|+.|...+ ++..+.++|+++
T Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~----~~lPP~~i~~a~~D~l~~--~~~~~a~~L~~a 272 (312)
T COG0657 201 --PGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDL----SGLPPTLIQTAEFDPLRD--EGEAYAERLRAA 272 (312)
T ss_pred --hhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccc----cCCCCEEEEecCCCcchh--HHHHHHHHHHHc
Confidence 01110 00000000 00 12344433321 237889999999998877 999999999999
Q ss_pred hCCCCCCCCcEEEEEeCCCCCCCCCch-HHhHHHHHHHHHHHHH
Q psy4818 681 IGSLPYQKNPLLLRVEQDAGHGQGTPL-MKSIEEMTDIYVFLMK 723 (734)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~ 723 (734)
|+++++..+++..|+|.... ....+...++..|+..
T Consensus 273 -------gv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 273 -------GVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred -------CCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999984322 2224445566777763
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=179.63 Aligned_cols=259 Identities=18% Similarity=0.152 Sum_probs=175.5
Q ss_pred CCCCCCCceEEEEEEEcC-----CCc--EEeEEEEEeccccCCCCCcEEEE----ecCCCCCc--------------CC-
Q psy4818 450 PEFEPTLFQTKQVYFRSK-----DGT--RVPMYIIHRVGALRNRRNPVIIY----GYGGYGVS--------------VL- 503 (734)
Q Consensus 450 ~~~~~~~~~~~~~~~~s~-----dg~--~i~~~~~~p~~~~~~~~~P~vv~----~hGg~~~~--------------~~- 503 (734)
+.|+...+..|.+++.+. ||+ .|.+.|++|+....+-+.|+|+- ..|..... ..
T Consensus 161 ~~~~~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~ 240 (767)
T PRK05371 161 PVFDTSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPP 240 (767)
T ss_pred cccCcccceEEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCC
Confidence 346777777888888774 553 68899999987543347788875 22320000 00
Q ss_pred --------------------ccc----cHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHH
Q psy4818 504 --------------------PTF----SISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYM 559 (734)
Q Consensus 504 --------------------~~~----~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l 559 (734)
..| ...+..+++++||+|++.|.||.++.+..|.. .+..+.+|..++|+||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl 315 (767)
T PRK05371 241 RAQFTPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWL 315 (767)
T ss_pred ccccccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHH
Confidence 000 11244677788999999999997765443322 2345688999999999
Q ss_pred HHc--CCCC------------CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc----cCccc----
Q psy4818 560 INK--KYTK------------PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT----IAYYS---- 617 (734)
Q Consensus 560 ~~~--~~~d------------~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~----~~~~~---- 617 (734)
..+ .++| .+|||++|.||||+++.++|+..|..++|+|+.+++.++..++... ....|
T Consensus 316 ~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged 395 (767)
T PRK05371 316 NGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGED 395 (767)
T ss_pred hhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcc
Confidence 854 2344 5799999999999999999998888889999999999876543210 00001
Q ss_pred ---cccc--------CCC-CCHHHH-------------------HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCC
Q psy4818 618 ---ESEF--------GSP-NNKTHF-------------------HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVP 666 (734)
Q Consensus 618 ---~~~~--------g~~-~~~~~~-------------------~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~ 666 (734)
..++ |.- ...+.+ +++.+.+++.++.+ ++.| +|++||.+|.+|+
T Consensus 396 ~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~k----IkvP-vLlIhGw~D~~V~ 470 (767)
T PRK05371 396 LDVLAELTYSRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADK----IKAS-VLVVHGLNDWNVK 470 (767)
T ss_pred hhhHHHHhhhcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhC----CCCC-EEEEeeCCCCCCC
Confidence 0000 000 000000 12333455555554 7888 9999999999999
Q ss_pred ChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 667 PLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 667 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+.++.+++++|++. +.+.++++.+ .+|....... ..+....+++||.++|..
T Consensus 471 ~~~s~~ly~aL~~~-------g~pkkL~l~~-g~H~~~~~~~-~~d~~e~~~~Wfd~~LkG 522 (767)
T PRK05371 471 PKQVYQWWDALPEN-------GVPKKLFLHQ-GGHVYPNNWQ-SIDFRDTMNAWFTHKLLG 522 (767)
T ss_pred hHHHHHHHHHHHhc-------CCCeEEEEeC-CCccCCCchh-HHHHHHHHHHHHHhcccc
Confidence 99999999999998 8888887765 5786544332 357778889999999864
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=164.16 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=147.4
Q ss_pred EcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccccc
Q psy4818 465 RSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544 (734)
Q Consensus 465 ~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~ 544 (734)
.+.||..+++.++.|.. .+.|+|+++||....+. .|.. +...|+++||.|+++|+||.|..... .. ....
T Consensus 6 ~~~~g~~l~~~~~~~~~----~~~~~v~llHG~~~~~~--~~~~-~~~~l~~~g~~via~D~~G~G~S~~~--~~-~~~~ 75 (276)
T PHA02857 6 FNLDNDYIYCKYWKPIT----YPKALVFISHGAGEHSG--RYEE-LAENISSLGILVFSHDHIGHGRSNGE--KM-MIDD 75 (276)
T ss_pred ecCCCCEEEEEeccCCC----CCCEEEEEeCCCccccc--hHHH-HHHHHHhCCCEEEEccCCCCCCCCCc--cC-CcCC
Confidence 35699999999998852 45689999999754433 3433 45667777999999999996643211 00 0001
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc--------------cc
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF--------------NK 610 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~--------------~~ 610 (734)
-...++|+...++++.+. ....+++++|+|+||.+++.++.++|++++++|+.+|..+.... ..
T Consensus 76 ~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 112256677777766543 22357999999999999999999999999999999997652110 00
Q ss_pred cccCcccccccCCCCCHHHHHHHHhCCc----------------------cCCCCCCCCCccCCcEEEEecCCCCCCCCh
Q psy4818 611 FTIAYYSESEFGSPNNKTHFHNLLSYSP----------------------LHNIKVPPNNTQYPATLVLTGDHDDRVPPL 668 (734)
Q Consensus 611 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp----------------------~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~ 668 (734)
......+...+-.....+... ...+| ...+.. +++| +|+++|++|..||+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vliv~G~~D~i~~~~ 226 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYK--YQYDPLVNHEKIKAGFASQVLKATNKVRKIIPK----IKTP-ILILQGTNNEISDVS 226 (276)
T ss_pred CCccCCCCHhhccCCHHHHHH--HhcCCCccCCCccHHHHHHHHHHHHHHHHhccc----CCCC-EEEEecCCCCcCChH
Confidence 000000000000000000000 00111 112232 6777 999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-HhHHHHHHHHHHHHHH
Q psy4818 669 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-KSIEEMTDIYVFLMKS 724 (734)
Q Consensus 669 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~ 724 (734)
.+.++.+.+.. .+.+.+++++||....... .+.+.++++++||.++
T Consensus 227 ~~~~l~~~~~~----------~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 227 GAYYFMQHANC----------NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHHHHHHHccC----------CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 99888776532 3578999999998875432 2467888999999986
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=170.14 Aligned_cols=207 Identities=19% Similarity=0.185 Sum_probs=145.4
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHI 172 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v 172 (734)
.+.++|||.+++|.....+ ...||+.+..+++.+.+.+.... ...++|||||++|||+.+.+|. .+||+
T Consensus 222 ~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~-------~~~~~wSPDG~~La~~~~~~g~--~~Iy~ 290 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGI-------NGAPRFSPDGKKLALVLSKDGQ--PEIYV 290 (448)
T ss_pred CceECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCC-------cCCeeECCCCCEEEEEEeCCCC--eEEEE
Confidence 4566799999999987653 36799998777776666654321 2468999999999999877664 78999
Q ss_pred EECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeE
Q psy4818 173 KDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLG 252 (734)
Q Consensus 173 ~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~ 252 (734)
+|+++++..+.+........++|||||++|+|++... ...+||++++.++.... +.+.. .+.
T Consensus 291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~-------------g~~~Iy~~dl~~g~~~~-Lt~~g----~~~ 352 (448)
T PRK04792 291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG-------------GKPQIYRVNLASGKVSR-LTFEG----EQN 352 (448)
T ss_pred EECCCCCeEECccCCCCccceEECCCCCEEEEEECCC-------------CCceEEEEECCCCCEEE-EecCC----CCC
Confidence 9999998655444333336799999999999987532 23589999998765322 22221 123
Q ss_pred EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEE
Q psy4818 253 LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVT 332 (734)
Q Consensus 253 ~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~ 332 (734)
..+.|||||++|++..... ...+||++|++++. ...+..........|+|||+.|+|.++.++ ...|+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~~g~---------~~~lt~~~~d~~ps~spdG~~I~~~~~~~g-~~~l~~ 421 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTN-GKFNIARQDLETGA---------MQVLTSTRLDESPSVAPNGTMVIYSTTYQG-KQVLAA 421 (448)
T ss_pred cCeeECCCCCEEEEEEecC-CceEEEEEECCCCC---------eEEccCCCCCCCceECCCCCEEEEEEecCC-ceEEEE
Confidence 4579999999999976543 33689999998842 222332211112249999999999887654 456999
Q ss_pred EecCCCC
Q psy4818 333 INLNNPC 339 (734)
Q Consensus 333 ~d~~~~~ 339 (734)
+++++..
T Consensus 422 ~~~~G~~ 428 (448)
T PRK04792 422 VSIDGRF 428 (448)
T ss_pred EECCCCc
Confidence 9987654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=165.23 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=159.4
Q ss_pred cEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECC
Q psy4818 154 KHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLG 233 (734)
Q Consensus 154 ~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 233 (734)
.+|||....++ ..+||++|.++....+.+........++|||||+.|+|++... ...+||++++.
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~-------------~~~~I~~~dl~ 228 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES-------------KKPVVYVHDLA 228 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC-------------CCcEEEEEECC
Confidence 67999886444 4789999987655443333333346899999999999988532 23479999998
Q ss_pred CCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE-EEEEe
Q psy4818 234 TEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH-EIIAN 312 (734)
Q Consensus 234 t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~-~~~s~ 312 (734)
++... .+...+ .....+.|||||+.|++..... ...+||++|+.++. .+.++....... ..|+|
T Consensus 229 ~g~~~--~l~~~~---g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSp 293 (427)
T PRK02889 229 TGRRR--VVANFK---GSNSAPAWSPDGRTLAVALSRD-GNSQIYTVNADGSG---------LRRLTQSSGIDTEPFFSP 293 (427)
T ss_pred CCCEE--EeecCC---CCccceEECCCCCEEEEEEccC-CCceEEEEECCCCC---------cEECCCCCCCCcCeEEcC
Confidence 77432 232222 2345789999999999876543 33799999998732 233333222222 24999
Q ss_pred cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 313 NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 313 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
||++|+|.+++.+ ..+||.++++++. .+.++... .........++++.+++....++..+|+++|+.+|+. +.+
T Consensus 294 DG~~l~f~s~~~g-~~~Iy~~~~~~g~---~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-~~l 367 (427)
T PRK02889 294 DGRSIYFTSDRGG-APQIYRMPASGGA---AQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-TAL 367 (427)
T ss_pred CCCEEEEEecCCC-CcEEEEEECCCCc---eEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-EEc
Confidence 9999999988754 4579999987765 35555333 2222233345667787777666667899999977765 556
Q ss_pred CCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 393 PLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 393 ~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.. +....++++||++.+++...... -..++.+++
T Consensus 368 t~~-~~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~ 402 (427)
T PRK02889 368 TDT-TRDESPSFAPNGRYILYATQQGG-RSVLAAVSS 402 (427)
T ss_pred cCC-CCccCceECCCCCEEEEEEecCC-CEEEEEEEC
Confidence 533 22346788999999888776543 356888888
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-16 Score=166.75 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=161.3
Q ss_pred CcEEEEEEeCC--CCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEE
Q psy4818 153 GKHFAYCLSKS--GSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYH 230 (734)
Q Consensus 153 G~~la~~~~~~--g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (734)
+++|||+.... +...++|+++|.+++.....+..+.....+.|||||+.|+|++... ...+||++
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~-------------~~~~l~~~ 233 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER-------------GRSAIYVQ 233 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC-------------CCcEEEEE
Confidence 56789987643 2346789999998776554444443447899999999999997532 23579999
Q ss_pred ECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE-EE
Q psy4818 231 VLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH-EI 309 (734)
Q Consensus 231 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~-~~ 309 (734)
++.++... .+...+ .....+.|||||++|+|..+.. ...+||++|++++. ...++....... ..
T Consensus 234 dl~~g~~~--~l~~~~---g~~~~~~~SpDG~~l~~~~s~~-g~~~Iy~~d~~~g~---------~~~lt~~~~~~~~~~ 298 (433)
T PRK04922 234 DLATGQRE--LVASFR---GINGAPSFSPDGRRLALTLSRD-GNPEIYVMDLGSRQ---------LTRLTNHFGIDTEPT 298 (433)
T ss_pred ECCCCCEE--EeccCC---CCccCceECCCCCEEEEEEeCC-CCceEEEEECCCCC---------eEECccCCCCccceE
Confidence 99876432 232221 2334689999999999887653 33699999998842 233333222222 24
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCcee
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~ 389 (734)
|+|||++|+|.+++.+ ..+||.++++++. .+.++... .........++++.+++....++..+|+++|+.+|+.
T Consensus 299 ~spDG~~l~f~sd~~g-~~~iy~~dl~~g~---~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~- 372 (433)
T PRK04922 299 WAPDGKSIYFTSDRGG-RPQIYRVAASGGS---AERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV- 372 (433)
T ss_pred ECCCCCEEEEEECCCC-CceEEEEECCCCC---eEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-
Confidence 9999999999998755 3579999998765 45555433 2222223345657777776655566899999977765
Q ss_pred eeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 390 HSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 390 ~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.++... ....+++++|++.+++.... ..-..+|.+++
T Consensus 373 ~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~ 410 (433)
T PRK04922 373 RTLTPGS-LDESPSFAPNGSMVLYATRE-GGRGVLAAVST 410 (433)
T ss_pred EECCCCC-CCCCceECCCCCEEEEEEec-CCceEEEEEEC
Confidence 5665432 23356788999888877654 22357999998
|
|
| >KOG1552|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=150.54 Aligned_cols=218 Identities=18% Similarity=0.217 Sum_probs=153.8
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcc-ccHHHHHHHHhcCeEEEEEecccCCCCCchh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPT-FSISRCMFLRHFNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~ 536 (734)
..+-+..++.-|..+....+.|.. ...++|+|.||- +...+ ....+..+-...++.|+..||+|.|..+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~----~~~~~lly~hGN---a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~--- 103 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPE----AAHPTLLYSHGN---AADLGQMVELFKELSIFLNCNVVSYDYSGYGRSS--- 103 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCcc----ccceEEEEcCCc---ccchHHHHHHHHHHhhcccceEEEEecccccccC---
Confidence 455566667778888888888764 357999999995 11111 1111222323358999999999944322
Q ss_pred hhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc-ccCc
Q psy4818 537 HNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF-TIAY 615 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~~~~ 615 (734)
|. ....+.++|+.++.+||.+..- .+++|+++|+|+|.-.+..+|.+.| .+|+|+.+|+++..+.+.. ....
T Consensus 104 ---G~-psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~ 176 (258)
T KOG1552|consen 104 ---GK-PSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTT 176 (258)
T ss_pred ---CC-cccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceE
Confidence 21 2234889999999999988754 7889999999999999999999998 6999999999998876532 1111
Q ss_pred ccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEE
Q psy4818 616 YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695 (734)
Q Consensus 616 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 695 (734)
.|+..| +-+..|+. +++| +||+||+.|.+|+..|+.+++++.++. ++-..
T Consensus 177 ~~~d~f---------------~~i~kI~~----i~~P-VLiiHgtdDevv~~sHg~~Lye~~k~~----------~epl~ 226 (258)
T KOG1552|consen 177 YCFDAF---------------PNIEKISK----ITCP-VLIIHGTDDEVVDFSHGKALYERCKEK----------VEPLW 226 (258)
T ss_pred Eeeccc---------------cccCccee----ccCC-EEEEecccCceecccccHHHHHhcccc----------CCCcE
Confidence 232222 12566665 8888 999999999999999999999988754 44556
Q ss_pred eCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 696 EQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
..|+||.......+-++ .+..|+...+
T Consensus 227 v~g~gH~~~~~~~~yi~---~l~~f~~~~~ 253 (258)
T KOG1552|consen 227 VKGAGHNDIELYPEYIE---HLRRFISSVL 253 (258)
T ss_pred EecCCCcccccCHHHHH---HHHHHHHHhc
Confidence 67999987654433333 3445555443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=165.95 Aligned_cols=249 Identities=16% Similarity=0.138 Sum_probs=164.0
Q ss_pred EeeEEeCCCCcEEEEEEeCC--CCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKS--GSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~--g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
+.+.... -.++|||..... +.+.++|+++|.+++.....+........+.|||||+.|+|++...
T Consensus 154 ltg~~g~-f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 154 LTGIKGA-FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred HhCCCcc-ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC------------
Confidence 3343333 566799987543 3456799999999876544433333346889999999999998532
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
...+||++++.++..+ .+...+ +....+.|||||++|+|..... ...+||++|++++. ...++.
T Consensus 221 -~~~~l~~~~l~~g~~~--~l~~~~---g~~~~~~~SpDG~~la~~~~~~-g~~~Iy~~d~~~~~---------~~~lt~ 284 (430)
T PRK00178 221 -KRPRIFVQNLDTGRRE--QITNFE---GLNGAPAWSPDGSKLAFVLSKD-GNPEIYVMDLASRQ---------LSRVTN 284 (430)
T ss_pred -CCCEEEEEECCCCCEE--EccCCC---CCcCCeEECCCCCEEEEEEccC-CCceEEEEECCCCC---------eEEccc
Confidence 2347999999877533 222221 2334689999999999887653 33799999998842 233333
Q ss_pred cccceE-EEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 302 GMDHHH-EIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 302 ~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
...... ..|+|||++|+|.+++.+ ..+||.+++++++ ++.++... .........++++.+++....++...|++
T Consensus 285 ~~~~~~~~~~spDg~~i~f~s~~~g-~~~iy~~d~~~g~---~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~ 359 (430)
T PRK00178 285 HPAIDTEPFWGKDGRTLYFTSDRGG-KPQIYKVNVNGGR---AERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAA 359 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEECCCC-CceEEEEECCCCC---EEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEE
Confidence 222222 249999999999988754 4579999998765 45555433 11212223356677888776666678999
Q ss_pred EECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+|+.+|+. +.++... .....+++||++.++++..... -..+|.+++
T Consensus 360 ~dl~tg~~-~~lt~~~-~~~~p~~spdg~~i~~~~~~~g-~~~l~~~~~ 405 (430)
T PRK00178 360 QDLQRGSV-RILTDTS-LDESPSVAPNGTMLIYATRQQG-RGVLMLVSI 405 (430)
T ss_pred EECCCCCE-EEccCCC-CCCCceECCCCCEEEEEEecCC-ceEEEEEEC
Confidence 99987765 6665432 2225678899988877654322 246888888
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-16 Score=163.62 Aligned_cols=246 Identities=13% Similarity=0.068 Sum_probs=147.7
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
-+...+...||.++....+.|. .+.|+||++||...... .|.. ++..++++||.|+++|+||.|..+.....
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~~~--~y~~-~~~~l~~~g~~v~~~D~~G~G~S~~~~~~ 101 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIESYV--KYAE-LAYDLFHLGYDVLIIDHRGQGRSGRLLDD 101 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCC-----CCCcEEEEECCccchHH--HHHH-HHHHHHHCCCeEEEEcCCCCCCCCCCCCC
Confidence 3455666778988888776653 24578999999643221 2222 34445567999999999997765422111
Q ss_pred ccccccCCCchhHHHHHHHHHHHc--CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc------
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINK--KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK------ 610 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~------ 610 (734)
...+ ....++++.+.+..+++. ...+..++.++|||+||.+++.++.++|+.++++|+.+|.........
T Consensus 102 ~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~ 179 (330)
T PRK10749 102 PHRG--HVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARR 179 (330)
T ss_pred CCcC--ccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHH
Confidence 0000 112444444443333322 112456899999999999999999999999999999988653210000
Q ss_pred -------c--c------cCcccccccCCC----CCHHHH----HHHHhCCcc----------------------CCCCCC
Q psy4818 611 -------F--T------IAYYSESEFGSP----NNKTHF----HNLLSYSPL----------------------HNIKVP 645 (734)
Q Consensus 611 -------~--~------~~~~~~~~~g~~----~~~~~~----~~~~~~sp~----------------------~~~~~p 645 (734)
. . ....|....... ...+.+ +.+. ..|. .++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (330)
T PRK10749 180 ILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYA-DDPELRVGGPTYHWVRESILAGEQVLAGAGD- 257 (330)
T ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH-hCCCcccCCCcHHHHHHHHHHHHHHHhhccC-
Confidence 0 0 000011000000 011111 1111 1121 22222
Q ss_pred CCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-HhHHHHHHHHHHHHHH
Q psy4818 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-KSIEEMTDIYVFLMKS 724 (734)
Q Consensus 646 ~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~ 724 (734)
++.| +||+||++|..|++..+.+++++++++ .......++++++++||....... .+.+.+..+++||.++
T Consensus 258 ---i~~P-~Lii~G~~D~vv~~~~~~~~~~~l~~~----~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 258 ---ITTP-LLLLQAEEERVVDNRMHDRFCEARTAA----GHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred ---CCCC-EEEEEeCCCeeeCHHHHHHHHHHHhhc----CCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 6777 999999999999999999999999876 111134578999999998654322 2356778889999764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-15 Score=156.44 Aligned_cols=303 Identities=13% Similarity=0.113 Sum_probs=185.0
Q ss_pred EEeCCeEEEEEEcCC----CCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEE
Q psy4818 97 QRQENNYFYFHNKGL----QNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHI 172 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v 172 (734)
++||+++++..+... .-...+|+.+...+..+.|.... ..+..+.|||||++|||+.+ ..||+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~-------~~~~~~~~sP~g~~~~~v~~------~nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP-------PKLQDAKWSPDGKYIAFVRD------NNLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE-------TTBSEEEE-SSSTEEEEEET------TEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc-------cccccceeecCCCeeEEEec------CceEE
Confidence 357888887665321 12345666666555555554431 12568999999999999985 36999
Q ss_pred EECCCCCcccccccc------------------cccCeeEEEcCCcEEEEEEEecCCCCC--------CCC---cc----
Q psy4818 173 KDVDTGKDYPEVLKN------------------VKFPSISWTHDHKGFFYNQYCDINGTA--------DGT---ET---- 219 (734)
Q Consensus 173 ~dl~~g~~~~~~~~~------------------~~~~~~~wSpDg~~l~y~~~~~~~~~~--------~~~---~~---- 219 (734)
+++.+++.++.+..+ ....++.|||||++|+|.+.++..... ... ..
T Consensus 68 ~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~ 147 (353)
T PF00930_consen 68 RDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR 147 (353)
T ss_dssp ESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE
T ss_pred EECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc
Confidence 999888755444322 023578899999999999998764321 110 00
Q ss_pred -----cccCCcEEEEEECCCCCCCCeeEEe-cCCCCeeEEEEEEecCCcEEEEE-EecCCCCceEEEEeCCCCCCCcccC
Q psy4818 220 -----TAHMGQKIYYHVLGTEQDKDIPVVE-FPNGRSLGLHSEVTDCGRYLLVS-TSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 220 -----~~~~~~~l~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~SpDG~~l~~~-~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
+.+...+|+++++.++....+.+-. ......++..+.|++|++.+++. .++......+.++|..++..+.+..
T Consensus 148 YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 148 YPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp --BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred cCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 1122346788888776543222211 11335578899999999955544 4554445788999998743321110
Q ss_pred --CCCceeeeccccceEEEEE-ecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee-CCEEEE
Q psy4818 293 --KFPLKTVIPGMDHHHEIIA-NNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA-NNKLIV 368 (734)
Q Consensus 293 --~~~~~~l~~~~~~~~~~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~ 368 (734)
...|. .. .....+. +++..+++++.+++ ..+||+++.+++. .+.|+.+. ..+.....+.. ++.|||
T Consensus 228 e~~~~Wv----~~-~~~~~~~~~~~~~~l~~s~~~G-~~hly~~~~~~~~---~~~lT~G~-~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 228 ETSDGWV----DV-YDPPHFLGPDGNEFLWISERDG-YRHLYLYDLDGGK---PRQLTSGD-WEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp EESSSSS----SS-SSEEEE-TTTSSEEEEEEETTS-SEEEEEEETTSSE---EEESS-SS-S-EEEEEEEECTSSEEEE
T ss_pred ecCCcce----ee-ecccccccCCCCEEEEEEEcCC-CcEEEEEcccccc---eeccccCc-eeecccceEcCCCCEEEE
Confidence 00110 00 1112244 78999999998766 5569999998876 35565554 55544344433 468888
Q ss_pred EEEeCC--ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCc
Q psy4818 369 HYIQNV--RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPG 422 (734)
Q Consensus 369 ~~~~~~--~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~ 422 (734)
.+..+. ..+||+++++++..++.|+...+....+++||+++.++..|+++.+|+
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred EecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 887643 569999999624455888865333246778899999999999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-16 Score=151.51 Aligned_cols=186 Identities=15% Similarity=0.184 Sum_probs=128.4
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCC----CCCchhhhccccccCCCc-------hhHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGG----ELGEDWHNAGRLLKKQNC-------FDDFQ 553 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~----~~g~~~~~~~~~~~~~~~-------~~D~~ 553 (734)
....|+||++||..++... |. .+...|.+.++.+.++.+||.. ..|..|+... ....... .+.+.
T Consensus 13 ~~~~~~vIlLHG~G~~~~~--~~-~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~ 88 (232)
T PRK11460 13 KPAQQLLLLFHGVGDNPVA--MG-EIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFI 88 (232)
T ss_pred CCCCcEEEEEeCCCCChHH--HH-HHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHH
Confidence 3567899999997554432 22 2445666556655666666631 2356676531 1111121 23344
Q ss_pred HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHH
Q psy4818 554 AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNL 633 (734)
Q Consensus 554 ~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 633 (734)
+.++++.++..++++||+++|+|+||.+++.++.++|++++++|+..|... . .+..
T Consensus 89 ~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~---------------~--~~~~------- 144 (232)
T PRK11460 89 ETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA---------------S--LPET------- 144 (232)
T ss_pred HHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc---------------c--cccc-------
Confidence 556666666668899999999999999999999889998888877655221 0 0000
Q ss_pred HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHH
Q psy4818 634 LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEE 713 (734)
Q Consensus 634 ~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 713 (734)
+ . .+.| +|++||++|++||++.+.+++++|++. |.++++++|+++||.+.. +.
T Consensus 145 ----~-----~----~~~p-vli~hG~~D~vvp~~~~~~~~~~L~~~-------g~~~~~~~~~~~gH~i~~------~~ 197 (232)
T PRK11460 145 ----A-----P----TATT-IHLIHGGEDPVIDVAHAVAAQEALISL-------GGDVTLDIVEDLGHAIDP------RL 197 (232)
T ss_pred ----c-----c----CCCc-EEEEecCCCCccCHHHHHHHHHHHHHC-------CCCeEEEEECCCCCCCCH------HH
Confidence 0 0 2334 999999999999999999999999998 889999999999999963 34
Q ss_pred HHHHHHHHHHHc
Q psy4818 714 MTDIYVFLMKSL 725 (734)
Q Consensus 714 ~~~~~~fl~~~l 725 (734)
...+.+||.+.|
T Consensus 198 ~~~~~~~l~~~l 209 (232)
T PRK11460 198 MQFALDRLRYTV 209 (232)
T ss_pred HHHHHHHHHHHc
Confidence 455677777776
|
|
| >KOG1455|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-16 Score=148.72 Aligned_cols=245 Identities=14% Similarity=0.117 Sum_probs=157.7
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
....-.++..+|.++....+.|.+- .++.-+|+++||. +....+.|+.. +..|+..||.|+..|++|+|... -
T Consensus 26 ~~~~~~~~n~rG~~lft~~W~p~~~--~~pr~lv~~~HG~-g~~~s~~~~~~-a~~l~~~g~~v~a~D~~GhG~Sd---G 98 (313)
T KOG1455|consen 26 TYSESFFTNPRGAKLFTQSWLPLSG--TEPRGLVFLCHGY-GEHSSWRYQST-AKRLAKSGFAVYAIDYEGHGRSD---G 98 (313)
T ss_pred ceeeeeEEcCCCCEeEEEecccCCC--CCCceEEEEEcCC-cccchhhHHHH-HHHHHhCCCeEEEeeccCCCcCC---C
Confidence 3444556678898898888888652 2556688889985 44444455543 45566789999999999966432 1
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc------
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF------ 611 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~------ 611 (734)
..+....-...++|+..-.+.+..+.--.--...++|+||||.+++.++.++|+.+.++|+.+|+.-...-...
T Consensus 99 l~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~ 178 (313)
T KOG1455|consen 99 LHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVIS 178 (313)
T ss_pred CcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHH
Confidence 11111111223455555555544443333346799999999999999999999999999999997643322100
Q ss_pred ------ccCccccc----ccCCC--CCHHHHHHHHhCCcc----------------------CCCCCCCCCccCCcEEEE
Q psy4818 612 ------TIAYYSES----EFGSP--NNKTHFHNLLSYSPL----------------------HNIKVPPNNTQYPATLVL 657 (734)
Q Consensus 612 ------~~~~~~~~----~~g~~--~~~~~~~~~~~~sp~----------------------~~~~~p~~~~~~P~~Li~ 657 (734)
...+.|.. ....+ .+++.. .....+|+ .+... +..| +||+
T Consensus 179 ~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r-~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~----vtvP-flil 252 (313)
T KOG1455|consen 179 ILTLLSKLIPTWKIVPTKDIIDVAFKDPEKR-KILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNE----VTVP-FLIL 252 (313)
T ss_pred HHHHHHHhCCceeecCCccccccccCCHHHH-HHhhcCCceecCCccHHHHHHHHHHHHHHHHhccc----cccc-EEEE
Confidence 01111210 00000 122221 12222332 34443 6777 9999
Q ss_pred ecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC--chHHhHHHHHHHHHHHHHH
Q psy4818 658 TGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT--PLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 658 ~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~ 724 (734)
||+.|.++.+.-+.++++..... +..++.|||.-|.... +.........++++||.++
T Consensus 253 HG~dD~VTDp~~Sk~Lye~A~S~---------DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 253 HGTDDKVTDPKVSKELYEKASSS---------DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred ecCCCcccCcHHHHHHHHhccCC---------CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999999999999999977654 5578999999998763 4444577889999999875
|
|
| >KOG1515|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=152.73 Aligned_cols=242 Identities=17% Similarity=0.180 Sum_probs=164.7
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc---CCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS---VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
....+.+. ....++.++|.|.......+.|+|||+|||...- ..+.|...+..+..+.+.+|+.+|||-..|.
T Consensus 62 ~~~dv~~~--~~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-- 137 (336)
T KOG1515|consen 62 TSKDVTID--PFTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-- 137 (336)
T ss_pred eeeeeEec--CCCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC--
Confidence 45566554 3456899999999865447899999999985432 3444554455555778999999999987763
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHc----CCCCCCcEEEEEcChHHHHHHHHHhcC------CCceeEEEEcCCcch
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINK----KYTKPKYITIMGGSNGGLLVGACLNQR------PELYGAALILVGALD 604 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~~~a~v~~~~~~d 604 (734)
.-...++|..+|+.|+.++ ..+|++||+|+|-|+||.+|..++.+. +-..++.|+..|++.
T Consensus 138 ---------~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 138 ---------PFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred ---------CCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 3456689999999999886 458999999999999999999987543 235799999999987
Q ss_pred hccccccccCcccccccCCCC-CHHHHHHHH-hC-------------CccCCCC-CCCCCccCCcEEEEecCCCCCCCCh
Q psy4818 605 MLRFNKFTIAYYSESEFGSPN-NKTHFHNLL-SY-------------SPLHNIK-VPPNNTQYPATLVLTGDHDDRVPPL 668 (734)
Q Consensus 605 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~~-------------sp~~~~~-~p~~~~~~P~~Li~~g~~D~~v~~~ 668 (734)
..........+.+ -+.+. ....++.+. .. +|..+.. ........|++||+.++.|.. ..
T Consensus 209 ~~~~~~~e~~~~~---~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L--~D 283 (336)
T KOG1515|consen 209 GTDRTESEKQQNL---NGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL--RD 283 (336)
T ss_pred CCCCCCHHHHHhh---cCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh--hh
Confidence 6544321100000 01110 111111111 11 1222100 000036788899999999954 48
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC--c-hHHhHHHHHHHHHHHHHH
Q psy4818 669 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT--P-LMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 669 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~~ 724 (734)
++..++++|++. |++++++.++++.|++.. + .....+...++.+|+.+.
T Consensus 284 ~~~~Y~~~Lkk~-------Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 284 EGLAYAEKLKKA-------GVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhHHHHHHHHHc-------CCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 899999999998 999999999999998742 2 234467777778887653
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=160.17 Aligned_cols=245 Identities=16% Similarity=0.089 Sum_probs=153.7
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
+-......+...++..+.+..+.|.. ....|+||++||..+... .|. .++..|+++||.|+++|+||.|.....
T Consensus 107 g~~~~~~~~~~~~~~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~~--~~~-~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 107 GTRWATSLFYGARRNALFCRSWAPAA---GEMRGILIIIHGLNEHSG--RYL-HFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred CceEEEEEEECCCCCEEEEEEecCCC---CCCceEEEEECCchHHHH--HHH-HHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 33456666777888899999988853 245689999999754322 233 345667778999999999996643321
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEEEcCCcchhcccccc-
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE---LYGAALILVGALDMLRFNKF- 611 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v~~~~~~d~~~~~~~- 611 (734)
+ +.........+|+.++++++..+. +..++.++|||+||.+++.++. +|+ .++++|+.+|..++......
T Consensus 181 ~---~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~ 254 (395)
T PLN02652 181 H---GYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIV 254 (395)
T ss_pred C---CCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHH
Confidence 1 100011122467777788776541 2247999999999999997764 564 78999999997654321100
Q ss_pred ---------ccCcc---cccccCCC--CCHHHH-HHH------------------HhCC--ccCCCCCCCCCccCCcEEE
Q psy4818 612 ---------TIAYY---SESEFGSP--NNKTHF-HNL------------------LSYS--PLHNIKVPPNNTQYPATLV 656 (734)
Q Consensus 612 ---------~~~~~---~~~~~g~~--~~~~~~-~~~------------------~~~s--p~~~~~~p~~~~~~P~~Li 656 (734)
..+.. ....++.+ .+++.. ..+ .+.. ...++.. ++.| +||
T Consensus 255 ~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~----I~vP-vLI 329 (395)
T PLN02652 255 GAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKS----VTVP-FMV 329 (395)
T ss_pred HHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhccc----CCCC-EEE
Confidence 00000 00000111 011110 000 0000 0112232 6778 999
Q ss_pred EecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 657 ~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+||++|..||+.++.++++++... ..+++++++++|....... +.+.++.+.+||..+++.
T Consensus 330 i~G~~D~vvp~~~a~~l~~~~~~~---------~k~l~~~~ga~H~l~~e~~-~e~v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 330 LHGTADRVTDPLASQDLYNEAASR---------HKDIKLYDGFLHDLLFEPE-REEVGRDIIDWMEKRLDL 390 (395)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCC---------CceEEEECCCeEEeccCCC-HHHHHHHHHHHHHHHhhc
Confidence 999999999999999999887532 3467889999998754422 357888899999998863
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=155.47 Aligned_cols=187 Identities=19% Similarity=0.182 Sum_probs=122.5
Q ss_pred EEEecCCCCCcCCccccHHHHHHHH-hcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc---CCCC
Q psy4818 491 IIYGYGGYGVSVLPTFSISRCMFLR-HFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK---KYTK 566 (734)
Q Consensus 491 vv~~hGg~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 566 (734)
|||+|||............+...++ +.|++|+.+|||-+++. .....++|+.++++|+.++ ...|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~-----------~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA-----------PFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS-----------STTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc-----------cccccccccccceeeecccccccccc
Confidence 7999999665443333344444444 47999999999986643 2234588999999999987 2478
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchhccccccccCccccccc-CCC-CCHHHHH----HH---
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDMLRFNKFTIAYYSESEF-GSP-NNKTHFH----NL--- 633 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~-~~~~~~~----~~--- 633 (734)
+++|+|+|.|+||.|++.++.+..+ ..+++++.+|++|+.......... ..++ ..+ ....... .+
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDD--SNENKDDPFLPAPKIDWFWKLYLPG 147 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHH--HHHHSTTSSSBHHHHHHHHHHHHST
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccc--ccccccccccccccccccccccccc
Confidence 9999999999999999999864322 479999999998872111000000 0000 000 0111111 11
Q ss_pred -----HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC
Q psy4818 634 -----LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 634 -----~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~ 703 (734)
...||+.. ... ...||++|++|+.|.. ..++..|+++|++. |++++++++++.+|.|
T Consensus 148 ~~~~~~~~sp~~~-~~~---~~~Pp~~i~~g~~D~l--~~~~~~~~~~L~~~-------gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 148 SDRDDPLASPLNA-SDL---KGLPPTLIIHGEDDVL--VDDSLRFAEKLKKA-------GVDVELHVYPGMPHGF 209 (211)
T ss_dssp GGTTSTTTSGGGS-SCC---TTCHEEEEEEETTSTT--HHHHHHHHHHHHHT-------T-EEEEEEETTEETTG
T ss_pred ccccccccccccc-ccc---ccCCCeeeeccccccc--hHHHHHHHHHHHHC-------CCCEEEEEECCCeEEe
Confidence 12455544 121 4688999999999965 46899999999998 9999999999999987
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-15 Score=154.78 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=166.2
Q ss_pred cCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc
Q psy4818 109 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV 188 (734)
Q Consensus 109 ~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~ 188 (734)
..+.....++..+..+.....+.+.. ..+..+.|||||+.++|..-..+. ...++++|+.+|+.........
T Consensus 167 ~~~~~~~~l~~~D~dg~~~~~l~~~~-------~~~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g 238 (425)
T COG0823 167 DGGPLPYELALGDYDGYNQQKLTDSG-------SLILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG 238 (425)
T ss_pred ccCCCCceEEEEccCCcceeEecccC-------cceeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC
Confidence 34455677888876544555555544 336779999999999999765543 2689999999998543332222
Q ss_pred ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEE
Q psy4818 189 KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVST 268 (734)
Q Consensus 189 ~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~ 268 (734)
....+.|||||++|+|+...+ ...+||+.++.+.+... +.+ ..+....+.|||||++|+|.+
T Consensus 239 ~~~~P~fspDG~~l~f~~~rd-------------g~~~iy~~dl~~~~~~~--Lt~---~~gi~~~Ps~spdG~~ivf~S 300 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRD-------------GSPDIYLMDLDGKNLPR--LTN---GFGINTSPSWSPDGSKIVFTS 300 (425)
T ss_pred ccCCccCCCCCCEEEEEECCC-------------CCccEEEEcCCCCccee--ccc---CCccccCccCCCCCCEEEEEe
Confidence 337899999999999998643 35689999999887432 222 233445899999999999998
Q ss_pred ecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce-EEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee
Q psy4818 269 SNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH-HEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 347 (734)
Q Consensus 269 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 347 (734)
++.+. .+||+++++++ ....++...... ...|||||++|+|.+...+ ...++..++.++.. ++.+.
T Consensus 301 dr~G~-p~I~~~~~~g~---------~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g-~~~i~~~~~~~~~~--~~~lt 367 (425)
T COG0823 301 DRGGR-PQIYLYDLEGS---------QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG-QWDIDKNDLASGGK--IRILT 367 (425)
T ss_pred CCCCC-cceEEECCCCC---------ceeEeeccCCCCcCccCCCCCCEEEEEeccCC-ceeeEEeccCCCCc--EEEcc
Confidence 77444 79999999983 223444333322 3459999999999984433 36788888876542 34333
Q ss_pred cCCCCceeEEEEE-eeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEee
Q psy4818 348 PEDENRTLDVVAA-VANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHI 402 (734)
Q Consensus 348 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~ 402 (734)
... ..+...+ .++..+++.....+.+.+...++ +|+..+.+....+.+...
T Consensus 368 ~~~---~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~-~g~~~~~~~~~~~~~~~p 419 (425)
T COG0823 368 STY---LNESPSWAPNGRMIMFSSGQGGGSVLSLVSL-DGRVSRPLPLADGDVRVP 419 (425)
T ss_pred ccc---cCCCCCcCCCCceEEEeccCCCCceEEEeec-cceeEEEEeccCcceecc
Confidence 322 1122222 34456666666666778888887 787655555444444333
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-14 Score=152.28 Aligned_cols=234 Identities=13% Similarity=0.135 Sum_probs=149.6
Q ss_pred CcEEEEEEeCCC-CceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEE
Q psy4818 153 GKHFAYCLSKSG-SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHV 231 (734)
Q Consensus 153 G~~la~~~~~~g-~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (734)
+++|||+....+ ...++|+++|.+++.....+........+.|||||+.|+|++.+. ...+||+++
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~-------------~~~~i~i~d 234 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN-------------KKSQLVVHD 234 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC-------------CCcEEEEEe
Confidence 688999987543 345899999998776444333333347899999999999998632 234799999
Q ss_pred CCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EE
Q psy4818 232 LGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-II 310 (734)
Q Consensus 232 l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~ 310 (734)
+.++..+ .+...+. ....+.|||||++|++..... ...+||++|++++. ...++.+...... .|
T Consensus 235 l~tg~~~--~l~~~~g---~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 235 LRSGARK--VVASFRG---HNGAPAFSPDGSRLAFASSKD-GVLNIYVMGANGGT---------PSQLTSGAGNNTEPSW 299 (429)
T ss_pred CCCCceE--EEecCCC---ccCceeECCCCCEEEEEEecC-CcEEEEEEECCCCC---------eEeeccCCCCcCCEEE
Confidence 9876432 2322221 223689999999999876542 23579999998732 2334433222222 49
Q ss_pred EecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceee
Q psy4818 311 ANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH 390 (734)
Q Consensus 311 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~ 390 (734)
+|||++|+|.+++.+ ..+||.++..++. ..++... . ......++++.+++... ..++++|+.+|+. +
T Consensus 300 SpDG~~i~f~s~~~g-~~~I~~~~~~~~~----~~~l~~~-~--~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~-~ 366 (429)
T PRK01742 300 SPDGQSILFTSDRSG-SPQVYRMSASGGG----ASLVGGR-G--YSAQISADGKTLVMING----DNVVKQDLTSGST-E 366 (429)
T ss_pred CCCCCEEEEEECCCC-CceEEEEECCCCC----eEEecCC-C--CCccCCCCCCEEEEEcC----CCEEEEECCCCCe-E
Confidence 999999999988654 4579999987654 2333322 2 12222345566666543 3588899988875 3
Q ss_pred eeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 391 SFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 391 ~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++.. .....++++|++..+++... ...-..++..+.
T Consensus 367 ~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~~~~l~~~~~ 403 (429)
T PRK01742 367 VLSST-FLDESPSISPNGIMIIYSST-QGLGKVLQLVSA 403 (429)
T ss_pred EecCC-CCCCCceECCCCCEEEEEEc-CCCceEEEEEEC
Confidence 44422 12235678899987776643 333344566666
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=138.75 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=124.9
Q ss_pred eEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc--hhhhccccccCCCchh
Q psy4818 473 PMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE--DWHNAGRLLKKQNCFD 550 (734)
Q Consensus 473 ~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~--~~~~~~~~~~~~~~~~ 550 (734)
...+|.|++.. .++.|+||.+||+.+......-...+..+.+++||+|+.|+-........ .|.. .....+..+..
T Consensus 2 ~Y~lYvP~~~~-~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d~~ 79 (220)
T PF10503_consen 2 SYRLYVPPGAP-RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGDVA 79 (220)
T ss_pred cEEEecCCCCC-CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccchh
Confidence 45788898753 35789999999986654321111124466777899999998543222222 3444 22223445566
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHH
Q psy4818 551 DFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHF 630 (734)
Q Consensus 551 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~ 630 (734)
.+.+.+++++.+.-+|++||.+.|.|+||.|+..++..+||+|+|+...+|+.--.... .........-|....+...
T Consensus 80 ~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~--~~~a~~~m~~g~~~~p~~~ 157 (220)
T PF10503_consen 80 FIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAAS--GASALSAMRSGPRPAPAAA 157 (220)
T ss_pred hHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccC--cccHHHHhhCCCCCChHHH
Confidence 67788999999888999999999999999999999999999999998887754211100 0000000111222222211
Q ss_pred HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q psy4818 631 HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680 (734)
Q Consensus 631 ~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~ 680 (734)
......+. ..| .+| ++|+||+.|..|.+....++.+.+...
T Consensus 158 ~~a~~~~g----~~~----~~P-~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 158 WGARSDAG----AYP----GYP-RIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred HHhhhhcc----CCC----CCC-EEEEecCCCCccCcchHHHHHHHHHHc
Confidence 11111111 011 235 889999999999999999999988775
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=150.54 Aligned_cols=244 Identities=15% Similarity=0.145 Sum_probs=159.4
Q ss_pred CCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEE
Q psy4818 150 SDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY 229 (734)
Q Consensus 150 SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (734)
...+.+++|....++.....|+++|..++.....+..+.....+.|||||+.|+|+.... ...+|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-------------~~~~i~v 218 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES-------------GKPEIYV 218 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC-------------CCcEEEE
Confidence 445788999887654556889999998765444333332236789999999999987532 2357999
Q ss_pred EECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce-EE
Q psy4818 230 HVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH-HE 308 (734)
Q Consensus 230 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~-~~ 308 (734)
+++.++... .+... ......+.|||||+.|++..... ...+||++++.++. ...+....... ..
T Consensus 219 ~d~~~g~~~--~~~~~---~~~~~~~~~spDg~~l~~~~~~~-~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~ 283 (417)
T TIGR02800 219 QDLATGQRE--KVASF---PGMNGAPAFSPDGSKLAVSLSKD-GNPDIYVMDLDGKQ---------LTRLTNGPGIDTEP 283 (417)
T ss_pred EECCCCCEE--EeecC---CCCccceEECCCCCEEEEEECCC-CCccEEEEECCCCC---------EEECCCCCCCCCCE
Confidence 999876432 22221 11234689999999999876542 33689999998732 22232221111 22
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 309 IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 309 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
.|++||++|+|.+++.+ ..+||.+++++++ ++.+.... .........++++.+++.....+..+|+++|+.++..
T Consensus 284 ~~s~dg~~l~~~s~~~g-~~~iy~~d~~~~~---~~~l~~~~-~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGG-SPQIYMMDADGGE---VRRLTFRG-GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EECCCCCEEEEEECCCC-CceEEEEECCCCC---EEEeecCC-CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 48999999999988754 4479999998765 45555443 2222233334556677766655667899999976554
Q ss_pred eeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 389 LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 389 ~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.++.. ......+++++++.+++....... ..++.++.
T Consensus 359 -~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~ 396 (417)
T TIGR02800 359 -RVLTDT-GLDESPSFAPNGRMILYATTRGGR-GVLGLVST 396 (417)
T ss_pred -EEccCC-CCCCCceECCCCCEEEEEEeCCCc-EEEEEEEC
Confidence 555433 223345678899888887765443 56777776
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=145.52 Aligned_cols=242 Identities=18% Similarity=0.160 Sum_probs=154.8
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
..+..+.+.||..+....+.+.. .+..+||.+||....... |.. ++..|..+||.|+..|.||.|...+ ..
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh~~r--y~~-la~~l~~~G~~V~~~D~RGhG~S~r--~~ 79 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPE----PPKGVVVLVHGLGEHSGR--YEE-LADDLAARGFDVYALDLRGHGRSPR--GQ 79 (298)
T ss_pred cccceeecCCCceEEEEeecCCC----CCCcEEEEecCchHHHHH--HHH-HHHHHHhCCCEEEEecCCCCCCCCC--CC
Confidence 34555678899988888877654 233799999997543322 222 4566777899999999999776642 11
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCC--CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc---cccc--
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKY--TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR---FNKF-- 611 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~---~~~~-- 611 (734)
......|+|....++.+++.-. .-..++.++||||||++++.++.+++..+.++|+.+|++.+.. ....
T Consensus 80 ----rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~ 155 (298)
T COG2267 80 ----RGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILAR 155 (298)
T ss_pred ----cCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHH
Confidence 1112336666666666555422 1235899999999999999999999999999999999987762 1100
Q ss_pred ---ccCccccccc--CC-------C----CCHHHHHHHHhCCcc------------------C--CC-CCCCCCccCCcE
Q psy4818 612 ---TIAYYSESEF--GS-------P----NNKTHFHNLLSYSPL------------------H--NI-KVPPNNTQYPAT 654 (734)
Q Consensus 612 ---~~~~~~~~~~--g~-------~----~~~~~~~~~~~~sp~------------------~--~~-~~p~~~~~~P~~ 654 (734)
.....+...+ +. . .+++..+.+ .-+|+ . .. ..+ .++.| +
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~-~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~--~~~~P-v 231 (298)
T COG2267 156 LALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAY-EADPLIGVGGPVSRWVDLALLAGRVPALRDAP--AIALP-V 231 (298)
T ss_pred HhcccccccccccccCcccccCcCcchhhcCHHHHHHH-hcCCccccCCccHHHHHHHHHhhcccchhccc--cccCC-E
Confidence 0000010111 00 0 122222111 11221 0 00 011 36778 9
Q ss_pred EEEecCCCCCCC-ChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-HhHHHHHHHHHHHHHHcC
Q psy4818 655 LVLTGDHDDRVP-PLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-KSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 655 Li~~g~~D~~v~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~l~ 726 (734)
||++|+.|.+|+ .....++++++... ..++++++++.|....... .+.+.++++.+||.+++.
T Consensus 232 Lll~g~~D~vv~~~~~~~~~~~~~~~~---------~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 232 LLLQGGDDRVVDNVEGLARFFERAGSP---------DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred EEEecCCCccccCcHHHHHHHHhcCCC---------CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 999999999999 67777777666432 2689999999998754332 126788889999998764
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=161.43 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=104.7
Q ss_pred EcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 465 RSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 465 ~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
++.||.+|.+.+++|++ .++.|+||++||...... ...+......+|+++||+|+++|+||.|+.+..+...
T Consensus 2 ~~~DG~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~---- 74 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL---- 74 (550)
T ss_pred cCCCCCEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec----
Confidence 56899999999999975 357899999997533221 0112222235566789999999999977665433221
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
.....+|+.++++|+.++.+.+ .+|+++|+|+||++++.++.++|+.++++|+.+++.|+.+.
T Consensus 75 -~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 75 -GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred -CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 1457899999999999988776 69999999999999999999989999999999999887753
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=153.48 Aligned_cols=208 Identities=17% Similarity=0.111 Sum_probs=147.6
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHI 172 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v 172 (734)
.+.+.++|..++|.....++. +.+|+.+...+..+++++.+.. ...++|||||++|||+..+.|+ .+||+
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~-~~i~~~~l~~g~~~~i~~~~g~-------~~~P~fspDG~~l~f~~~rdg~--~~iy~ 266 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGC-PRIYYLDLNTGKRPVILNFNGN-------NGAPAFSPDGSKLAFSSSRDGS--PDIYL 266 (425)
T ss_pred ccccCcCCCceEEEEEecCCC-ceEEEEeccCCccceeeccCCc-------cCCccCCCCCCEEEEEECCCCC--ccEEE
Confidence 577778998888877655332 6688888777777888875533 4579999999999999998876 89999
Q ss_pred EECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeE
Q psy4818 173 KDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLG 252 (734)
Q Consensus 173 ~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~ 252 (734)
+|+.++.....+........+.|||||++|+|+++.. ...+||++++++.+.+. +.+.... .
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~-------------G~p~I~~~~~~g~~~~r-iT~~~~~----~ 328 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRG-------------GRPQIYLYDLEGSQVTR-LTFSGGG----N 328 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCC-------------CCcceEEECCCCCceeE-eeccCCC----C
Confidence 9999988544343333336899999999999998632 33489999999887632 2332221 1
Q ss_pred EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEE
Q psy4818 253 LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVT 332 (734)
Q Consensus 253 ~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~ 332 (734)
..+.|||||++|+|..... ....|.+.++.++. .++.+..........|+++|+.+.|.+... ....|+.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~-g~~~i~~~~~~~~~--------~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~ 398 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSG-GQWDIDKNDLASGG--------KIRILTSTYLNESPSWAPNGRMIMFSSGQG-GGSVLSL 398 (425)
T ss_pred cCccCCCCCCEEEEEeccC-CceeeEEeccCCCC--------cEEEccccccCCCCCcCCCCceEEEeccCC-CCceEEE
Confidence 2689999999999988442 22567888887732 144444433333334999999999988765 3455777
Q ss_pred EecCCC
Q psy4818 333 INLNNP 338 (734)
Q Consensus 333 ~d~~~~ 338 (734)
++..+.
T Consensus 399 ~s~~g~ 404 (425)
T COG0823 399 VSLDGR 404 (425)
T ss_pred eeccce
Confidence 776654
|
|
| >KOG4391|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=131.67 Aligned_cols=234 Identities=15% Similarity=0.171 Sum_probs=163.6
Q ss_pred CCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 453 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 453 ~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
+..+++-|++...+.|..+++++++..+ ...|+++|+|+.-|. ++ .+.+...-++.+.+..|++++||| |
T Consensus 48 ~~~n~pye~i~l~T~D~vtL~a~~~~~E-----~S~pTlLyfh~NAGN-mG-hr~~i~~~fy~~l~mnv~ivsYRG---Y 117 (300)
T KOG4391|consen 48 KEFNMPYERIELRTRDKVTLDAYLMLSE-----SSRPTLLYFHANAGN-MG-HRLPIARVFYVNLKMNVLIVSYRG---Y 117 (300)
T ss_pred cccCCCceEEEEEcCcceeEeeeeeccc-----CCCceEEEEccCCCc-cc-chhhHHHHHHHHcCceEEEEEeec---c
Confidence 3456788999999999999999999843 378999999986433 22 222333345667899999999999 5
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 612 (734)
|..=..+ ....-.-|-.++++||..+...|..+|.++|.|.||..+..++..+-++..|+|...-|+++....-..
T Consensus 118 G~S~Gsp----sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~ 193 (300)
T KOG4391|consen 118 GKSEGSP----SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPL 193 (300)
T ss_pred ccCCCCc----cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhe
Confidence 5321111 112234589999999999999999999999999999999999999999999999998888764432111
Q ss_pred c---CcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCC
Q psy4818 613 I---AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN 689 (734)
Q Consensus 613 ~---~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~ 689 (734)
. +..+...|. ++ ..++-+..+.. .+.| .|++.|..|..|||-+..++++.-...
T Consensus 194 v~p~~~k~i~~lc-------~k--n~~~S~~ki~~----~~~P-~LFiSGlkDelVPP~~Mr~Ly~~c~S~--------- 250 (300)
T KOG4391|consen 194 VFPFPMKYIPLLC-------YK--NKWLSYRKIGQ----CRMP-FLFISGLKDELVPPVMMRQLYELCPSR--------- 250 (300)
T ss_pred eccchhhHHHHHH-------HH--hhhcchhhhcc----ccCc-eEEeecCccccCCcHHHHHHHHhCchh---------
Confidence 0 000001110 00 02233334443 5666 999999999999999998888866544
Q ss_pred cEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 690 PLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 690 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
..++..||++.|.-...-. -.++.+-+||.+...
T Consensus 251 ~Krl~eFP~gtHNDT~i~d---GYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 251 TKRLAEFPDGTHNDTWICD---GYFQAIEDFLAEVVK 284 (300)
T ss_pred hhhheeCCCCccCceEEec---cHHHHHHHHHHHhcc
Confidence 3468899999997543221 234456678877654
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=139.00 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=111.9
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHH-HHHhcCeEEEEEeccc------CCCCCchhhhccccccC-CCchhHHHHH-
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCM-FLRHFNGIYAIPNIRG------GGELGEDWHNAGRLLKK-QNCFDDFQAA- 555 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~~G~~v~~~~~rG------~~~~g~~~~~~~~~~~~-~~~~~D~~~~- 555 (734)
+...|+||++||- |... ..+.. ... .+......++.++-+- +|....+|+........ ....+++..+
T Consensus 11 ~~~~~lvi~LHG~-G~~~-~~~~~-~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 11 GKAKPLVILLHGY-GDSE-DLFAL-LAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp ST-SEEEEEE--T-TS-H-HHHHH-HHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCceEEEEECCC-CCCc-chhHH-HHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 3678999999996 3332 22211 112 1222367777665431 12223378764322211 1223333332
Q ss_pred ------HHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHH
Q psy4818 556 ------AEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTH 629 (734)
Q Consensus 556 ------~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~ 629 (734)
++.+++.+ ++++||.+.|+|.||.+++.++.++|+.|+++|+.+|.+-.... + .
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------~---------~-- 147 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------L---------E-- 147 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------C---------H--
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------c---------c--
Confidence 33333334 89999999999999999999999999999999999986632110 0 0
Q ss_pred HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHH
Q psy4818 630 FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMK 709 (734)
Q Consensus 630 ~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 709 (734)
...... .+.| +|++||..|++||...+++.++.|++. +.++++..|++.||.+.
T Consensus 148 ----------~~~~~~---~~~p-i~~~hG~~D~vvp~~~~~~~~~~L~~~-------~~~v~~~~~~g~gH~i~----- 201 (216)
T PF02230_consen 148 ----------DRPEAL---AKTP-ILIIHGDEDPVVPFEWAEKTAEFLKAA-------GANVEFHEYPGGGHEIS----- 201 (216)
T ss_dssp ----------CCHCCC---CTS--EEEEEETT-SSSTHHHHHHHHHHHHCT-------T-GEEEEEETT-SSS-------
T ss_pred ----------cccccc---CCCc-EEEEecCCCCcccHHHHHHHHHHHHhc-------CCCEEEEEcCCCCCCCC-----
Confidence 000110 1234 999999999999999999999999998 88999999999999885
Q ss_pred hHHHHHHHHHHHHHHc
Q psy4818 710 SIEEMTDIYVFLMKSL 725 (734)
Q Consensus 710 ~~~~~~~~~~fl~~~l 725 (734)
.++...+.+||.+++
T Consensus 202 -~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 202 -PEELRDLREFLEKHI 216 (216)
T ss_dssp -HHHHHHHHHHHHHH-
T ss_pred -HHHHHHHHHHHhhhC
Confidence 255667889998874
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=147.51 Aligned_cols=214 Identities=18% Similarity=0.151 Sum_probs=134.3
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc---CCc-cccHH---HHHHHHhcCeEEEEEecccCCCCCchhhhcc
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS---VLP-TFSIS---RCMFLRHFNGIYAIPNIRGGGELGEDWHNAG 540 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~---~~~-~~~~~---~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~ 540 (734)
||++|.+.+++| +...+++.|+||..++-.... ... ...+. ....++++||+|++.|.||.++.+..|...
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~- 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM- 78 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC-
Confidence 799999999999 444578999999987643211 000 00110 011255679999999999977666554432
Q ss_pred ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc-ccc------ccc
Q psy4818 541 RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR-FNK------FTI 613 (734)
Q Consensus 541 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~-~~~------~~~ 613 (734)
..++.+|..++|+|+.++.+.+ .||+++|.||+|+.+..++.+.|...+|++..++..|+.. ... ...
T Consensus 79 ----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~ 153 (272)
T PF02129_consen 79 ----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLGF 153 (272)
T ss_dssp ----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCCH
T ss_pred ----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccccc
Confidence 4557899999999999997765 6999999999999999999977778899999999998876 210 000
Q ss_pred Ccccc------cccCC-C-CCHHH------------------------H----------HHHHhCCccCCCCCCCCCccC
Q psy4818 614 AYYSE------SEFGS-P-NNKTH------------------------F----------HNLLSYSPLHNIKVPPNNTQY 651 (734)
Q Consensus 614 ~~~~~------~~~g~-~-~~~~~------------------------~----------~~~~~~sp~~~~~~p~~~~~~ 651 (734)
...|. ..... + ...+. . +++.+.++..++.+ ++.
T Consensus 154 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~----i~v 229 (272)
T PF02129_consen 154 FAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDK----IDV 229 (272)
T ss_dssp HHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG------S
T ss_pred hhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhh----CCC
Confidence 11220 00000 0 00000 0 11122222222333 777
Q ss_pred CcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCC-CcEEEEEeCCCCCC
Q psy4818 652 PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK-NPLLLRVEQDAGHG 702 (734)
Q Consensus 652 P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~gH~ 702 (734)
| +|+++|-.|.... .++.+.+++|++. + ++..|++-| -+|+
T Consensus 230 P-~l~v~Gw~D~~~~-~~~~~~~~~l~~~-------~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 230 P-VLIVGGWYDTLFL-RGALRAYEALRAP-------GSKPQRLIIGP-WTHG 271 (272)
T ss_dssp E-EEEEEETTCSSTS-HHHHHHHHHHCTT-------STC-EEEEEES-ESTT
T ss_pred C-EEEecccCCcccc-hHHHHHHHHhhcC-------CCCCCEEEEeC-CCCC
Confidence 7 9999999997777 8999999999887 6 677888866 4664
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=144.38 Aligned_cols=242 Identities=14% Similarity=0.074 Sum_probs=139.1
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
.++..++..||..+......... .....|+||++||..+..... +...+...|.++||.|+++|+||.|+.......
T Consensus 31 ~~~~~~~~~dg~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~~-~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~ 107 (324)
T PRK10985 31 PYWQRLELPDGDFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNSP-YAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR 107 (324)
T ss_pred cceeEEECCCCCEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcCH-HHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc
Confidence 33444667888776554332111 234579999999986654332 333345667778999999999996643211111
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc--eeEEEEcCCcchhcccc-------
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL--YGAALILVGALDMLRFN------- 609 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~--~~a~v~~~~~~d~~~~~------- 609 (734)
.......+|+..+++++.++. ...++.++|+|+||.+++.++.++++. ++++|+.++..++....
T Consensus 108 ----~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~ 181 (324)
T PRK10985 108 ----IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGF 181 (324)
T ss_pred ----eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhH
Confidence 111234789999999998753 335799999999999888877766543 67766666654432100
Q ss_pred ----cc----c----c---Ccccc----------------ccc----CCC--CCHHHHHHHHhCCccCCCCCCCCCccCC
Q psy4818 610 ----KF----T----I---AYYSE----------------SEF----GSP--NNKTHFHNLLSYSPLHNIKVPPNNTQYP 652 (734)
Q Consensus 610 ----~~----~----~---~~~~~----------------~~~----g~~--~~~~~~~~~~~~sp~~~~~~p~~~~~~P 652 (734)
.. . . ...|. .+| ..+ ......+++...++...++. ++.|
T Consensus 182 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~----i~~P 257 (324)
T PRK10985 182 SRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQ----IRKP 257 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhC----CCCC
Confidence 00 0 0 00000 000 000 00111233334444444443 7777
Q ss_pred cEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc----hHHhHHHHHHHHHHHHHHcC
Q psy4818 653 ATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP----LMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 653 ~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~~fl~~~l~ 726 (734)
+|+++|++|+.+++.....+ .+. ...+.+.+.+++||...-. ... .-....+.+||...++
T Consensus 258 -~lii~g~~D~~~~~~~~~~~----~~~-------~~~~~~~~~~~~GH~~~~~g~~~~~~-~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 258 -TLIIHAKDDPFMTHEVIPKP----ESL-------PPNVEYQLTEHGGHVGFVGGTLLKPQ-MWLEQRIPDWLTTYLE 322 (324)
T ss_pred -EEEEecCCCCCCChhhChHH----HHh-------CCCeEEEECCCCCceeeCCCCCCCCC-ccHHHHHHHHHHHhhc
Confidence 99999999999987655443 222 2346778889999953211 111 1122347888877654
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=141.71 Aligned_cols=236 Identities=14% Similarity=0.118 Sum_probs=134.4
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..+.+.+...+|.++...+. ..+ .+..|.||++||.+..... |.. ....|.++||.|+++|.||.|.....
T Consensus 20 ~~~~~~~~~~~~~~~~i~y~-~~G---~~~~~~lvliHG~~~~~~~--w~~-~~~~L~~~gy~vi~~Dl~G~G~S~~~-- 90 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMHYV-DEG---PADGPPVLLLHGEPSWSYL--YRK-MIPILAAAGHRVIAPDLIGFGRSDKP-- 90 (302)
T ss_pred CceeEeecCCCCceEEEEEE-ecC---CCCCCEEEEECCCCCchhh--HHH-HHHHHHhCCCEEEEECCCCCCCCCCC--
Confidence 45566666656665554332 222 1235789999997544433 333 34567666999999999995532110
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc------c---
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR------F--- 608 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~------~--- 608 (734)
.......+++..+.+..++++ ++.+++.++|||+||.++..++.++|++++++|+.++..-... +
T Consensus 91 ----~~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 164 (302)
T PRK00870 91 ----TRREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAW 164 (302)
T ss_pred ----CCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhh
Confidence 011223566666665555554 3445799999999999999999999999999988765321000 0
Q ss_pred cccc--cCcc----c-------------ccccCCCCCHHHH----HHHHh---CCcc-----------CCCCCCCCCccC
Q psy4818 609 NKFT--IAYY----S-------------ESEFGSPNNKTHF----HNLLS---YSPL-----------HNIKVPPNNTQY 651 (734)
Q Consensus 609 ~~~~--~~~~----~-------------~~~~g~~~~~~~~----~~~~~---~sp~-----------~~~~~p~~~~~~ 651 (734)
..+. .... + ...|..+...+.. ..+.. ..+. ..+. .+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~ 240 (302)
T PRK00870 165 RAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLE----RWDK 240 (302)
T ss_pred hcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhh----cCCC
Confidence 0000 0000 0 0001000000000 00000 0000 0112 2778
Q ss_pred CcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 652 PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 652 P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
| +||++|++|..++... .++.+.+.+. .-+.+.+++++||...-... .+....+.+||.++
T Consensus 241 P-~lii~G~~D~~~~~~~-~~~~~~~~~~--------~~~~~~~i~~~gH~~~~e~p--~~~~~~l~~fl~~~ 301 (302)
T PRK00870 241 P-FLTAFSDSDPITGGGD-AILQKRIPGA--------AGQPHPTIKGAGHFLQEDSG--EELAEAVLEFIRAT 301 (302)
T ss_pred c-eEEEecCCCCcccCch-HHHHhhcccc--------cccceeeecCCCccchhhCh--HHHHHHHHHHHhcC
Confidence 8 9999999999999755 6665555432 11246788999998764433 36666788888654
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=145.16 Aligned_cols=247 Identities=17% Similarity=0.103 Sum_probs=143.1
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..++..+...||..+....+.+.........|+||++||..+.+.. .|.......+.++||.|+++|+||.|+...
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~-~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~--- 145 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDD-SYVRHMLLRARSKGWRVVVFNSRGCADSPV--- 145 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHCCCEEEEEecCCCCCCCC---
Confidence 4455667778998887655543221123457899999998766543 232223333445799999999999654321
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc--eeEEEEcCCcchhcc-c---cc-
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL--YGAALILVGALDMLR-F---NK- 610 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~--~~a~v~~~~~~d~~~-~---~~- 610 (734)
.. .........+|+.+++++|..+. ...++.++|+|+||.+++.++.++|+. +.++++.++-.++.. . ..
T Consensus 146 ~~-~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~ 222 (388)
T PLN02511 146 TT-PQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKG 222 (388)
T ss_pred CC-cCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhcc
Confidence 00 01112345789999999997652 235799999999999999999998875 566665554333310 0 00
Q ss_pred c------ccC----------c-------ccc-----------ccc----CCC--CCHHHHHHHHhCCccCCCCCCCCCcc
Q psy4818 611 F------TIA----------Y-------YSE-----------SEF----GSP--NNKTHFHNLLSYSPLHNIKVPPNNTQ 650 (734)
Q Consensus 611 ~------~~~----------~-------~~~-----------~~~----g~~--~~~~~~~~~~~~sp~~~~~~p~~~~~ 650 (734)
+ ... . .+. .+| ..+ .....-+++...|+...+.. ++
T Consensus 223 ~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~----I~ 298 (388)
T PLN02511 223 FNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKH----VR 298 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhcc----CC
Confidence 0 000 0 000 000 000 00000112344555555654 88
Q ss_pred CCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHh----HHHHHHHHHHHHHHcC
Q psy4818 651 YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKS----IEEMTDIYVFLMKSLG 726 (734)
Q Consensus 651 ~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~----~~~~~~~~~fl~~~l~ 726 (734)
.| +||++|.+|+.+|...... .+.+. ...+.+.+.+++||...-..... --....+.+||.....
T Consensus 299 vP-tLiI~g~dDpi~p~~~~~~---~~~~~-------~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~ 367 (388)
T PLN02511 299 VP-LLCIQAANDPIAPARGIPR---EDIKA-------NPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEE 367 (388)
T ss_pred CC-eEEEEcCCCCcCCcccCcH---hHHhc-------CCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 88 9999999999998764311 11122 34568899999999653221110 0123456788877653
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=141.01 Aligned_cols=238 Identities=16% Similarity=0.157 Sum_probs=140.8
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
..+..+++.++-.+ ..|++++..|+. +++.|+||.+-| ..+-....+. .+...++.+|++++.+|.+|-|...
T Consensus 161 ~~~~i~~v~iP~eg-~~I~g~LhlP~~---~~p~P~VIv~gG-lDs~qeD~~~-l~~~~l~~rGiA~LtvDmPG~G~s~- 233 (411)
T PF06500_consen 161 SDYPIEEVEIPFEG-KTIPGYLHLPSG---EKPYPTVIVCGG-LDSLQEDLYR-LFRDYLAPRGIAMLTVDMPGQGESP- 233 (411)
T ss_dssp SSSEEEEEEEEETT-CEEEEEEEESSS---SS-EEEEEEE---TTS-GGGGHH-HHHCCCHHCT-EEEEE--TTSGGGT-
T ss_pred CCCCcEEEEEeeCC-cEEEEEEEcCCC---CCCCCEEEEeCC-cchhHHHHHH-HHHHHHHhCCCEEEEEccCCCcccc-
Confidence 35678999998754 889999999984 578898888644 3333322222 2334566789999999999966421
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc-hhccccc--c
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL-DMLRFNK--F 611 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~-d~~~~~~--~ 611 (734)
.|- ..+....-..++++||.+..++|++||+++|.|+||+++.+++..++++++|+|+..|++ ++++-.. .
T Consensus 234 ~~~------l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~ 307 (411)
T PF06500_consen 234 KWP------LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQ 307 (411)
T ss_dssp TT-------S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHT
T ss_pred cCC------CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHh
Confidence 111 111222345678999999999999999999999999999999987778899999887754 3332100 0
Q ss_pred ccCc----ccccccCCCC--CHHHHHHHHhCCccCC-CC-CCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q psy4818 612 TIAY----YSESEFGSPN--NKTHFHNLLSYSPLHN-IK-VPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683 (734)
Q Consensus 612 ~~~~----~~~~~~g~~~--~~~~~~~~~~~sp~~~-~~-~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~ 683 (734)
..+. .+...+|... +......+.++|-..+ +- .. +.++| +|.+.+++|+.+|.+++.-++. .
T Consensus 308 ~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~r--r~~~p-lL~i~~~~D~v~P~eD~~lia~----~--- 377 (411)
T PF06500_consen 308 RVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGR--RCPTP-LLAINGEDDPVSPIEDSRLIAE----S--- 377 (411)
T ss_dssp TS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS---BSS--EEEEEETT-SSS-HHHHHHHHH----T---
T ss_pred cCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCC--CCCcc-eEEeecCCCCCCCHHHHHHHHh----c---
Confidence 1111 1113345432 2223345677777553 21 11 26677 9999999999999888654433 2
Q ss_pred CCCCCCcEEEEEeCCCC-CCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 684 LPYQKNPLLLRVEQDAG-HGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 684 ~~~~~~~~~~~~~~~~g-H~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+.+-+...++... |.. . -+....++.||.+.|
T Consensus 378 ----s~~gk~~~~~~~~~~~g----y--~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 378 ----STDGKALRIPSKPLHMG----Y--PQALDEIYKWLEDKL 410 (411)
T ss_dssp ----BTT-EEEEE-SSSHHHH----H--HHHHHHHHHHHHHHH
T ss_pred ----CCCCceeecCCCccccc----h--HHHHHHHHHHHHHhc
Confidence 2333444555433 532 1 244566899998876
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-14 Score=140.44 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=124.9
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
.+.|+||++||..+... .|. .....|.+ ||.|+++|+||.|..... ......++|....+..+++. .
T Consensus 11 ~~~~~iv~lhG~~~~~~--~~~-~~~~~l~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~i~~--~ 77 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGS--YWA-PQLDVLTQ-RFHVVTYDHRGTGRSPGE-------LPPGYSIAHMADDVLQLLDA--L 77 (257)
T ss_pred CCCCEEEEEcCCCcchh--HHH-HHHHHHHh-ccEEEEEcCCCCCCCCCC-------CcccCCHHHHHHHHHHHHHH--h
Confidence 35788999999765543 233 23456664 999999999996644311 01123456665555555443 3
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-----------c-cc------------cCccccccc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN-----------K-FT------------IAYYSESEF 621 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----------~-~~------------~~~~~~~~~ 621 (734)
+..++.++|+|+||++++.++.++|+.++++|+..++....... . .. ....|....
T Consensus 78 ~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (257)
T TIGR03611 78 NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISEN 157 (257)
T ss_pred CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhcc
Confidence 45689999999999999999999999889988877654321000 0 00 000010000
Q ss_pred C------------C-CCCHH---HHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCC
Q psy4818 622 G------------S-PNNKT---HFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLP 685 (734)
Q Consensus 622 g------------~-~~~~~---~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~ 685 (734)
. . ..... .+..+..++....+.. ++.| +|+++|++|..+|++++.++++.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~----- 227 (257)
T TIGR03611 158 AARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDR----IQHP-VLLIANRDDMLVPYTQSLRLAAALPNA----- 227 (257)
T ss_pred chhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcc----cCcc-EEEEecCcCcccCHHHHHHHHHhcCCc-----
Confidence 0 0 00000 0111122222223333 6677 999999999999999988887765432
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 686 YQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 686 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
.++.++++||.+.-... .+....+.+||.
T Consensus 228 ------~~~~~~~~gH~~~~~~~--~~~~~~i~~fl~ 256 (257)
T TIGR03611 228 ------QLKLLPYGGHASNVTDP--ETFNRALLDFLK 256 (257)
T ss_pred ------eEEEECCCCCCccccCH--HHHHHHHHHHhc
Confidence 67788999998765433 355556777764
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=143.26 Aligned_cols=234 Identities=15% Similarity=0.086 Sum_probs=136.5
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-----------------------cccHHHHHHHHhcCeE
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-----------------------TFSISRCMFLRHFNGI 520 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-----------------------~~~~~~~~~l~~~G~~ 520 (734)
+.+.||..|....+.|+ .+..+|+++||..+..... .|...++..|.++||.
T Consensus 2 ~~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~ 76 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYS 76 (332)
T ss_pred ccCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCc
Confidence 56779999988888775 2456999999953332210 1223466778788999
Q ss_pred EEEEecccCCCCC-chhhhccccccCCCchhHHHHHHHHHHHc------------------CCCCCCcEEEEEcChHHHH
Q psy4818 521 YAIPNIRGGGELG-EDWHNAGRLLKKQNCFDDFQAAAEYMINK------------------KYTKPKYITIMGGSNGGLL 581 (734)
Q Consensus 521 v~~~~~rG~~~~g-~~~~~~~~~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~ri~i~G~S~GG~~ 581 (734)
|+++|.||.|... .... .+....-..-++|+...++.+.+. .+-....+.|+||||||.+
T Consensus 77 V~~~D~rGHG~S~~~~~~-~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 77 VYGLDLQGHGESDGLQNL-RGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred EEEecccccCCCcccccc-ccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 9999999977532 1110 000000011134455555544331 1111246999999999999
Q ss_pred HHHHHhcCCC--------ceeEEEEcCCcchhcccc-----------------------ccccCc-ccccccCCCCCHHH
Q psy4818 582 VGACLNQRPE--------LYGAALILVGALDMLRFN-----------------------KFTIAY-YSESEFGSPNNKTH 629 (734)
Q Consensus 582 ~~~~~~~~p~--------~~~a~v~~~~~~d~~~~~-----------------------~~~~~~-~~~~~~g~~~~~~~ 629 (734)
+..++.+.++ .++++|+.+|.+.+.... .+..+. .+.. .++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~-----~~~~~ 230 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYE-----KSPYV 230 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccc-----cChhh
Confidence 9998765432 578889888765432100 000000 0000 01111
Q ss_pred HHHHHhCCcc----------------------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCC
Q psy4818 630 FHNLLSYSPL----------------------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 687 (734)
Q Consensus 630 ~~~~~~~sp~----------------------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~ 687 (734)
.+. ...+|+ ..+... ..+.| +|++||++|..|++..+.++++++..
T Consensus 231 ~~~-~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i--~~~~P-~Lii~G~~D~vv~~~~~~~~~~~~~~-------- 298 (332)
T TIGR01607 231 NDI-IKFDKFRYDGGITFNLASELIKATDTLDCDIDYI--PKDIP-ILFIHSKGDCVCSYEGTVSFYNKLSI-------- 298 (332)
T ss_pred hhH-HhcCccccCCcccHHHHHHHHHHHHHHHhhHhhC--CCCCC-EEEEEeCCCCccCHHHHHHHHHhccC--------
Confidence 000 011111 111110 02566 99999999999999988887776542
Q ss_pred CCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 688 KNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
....++++++++|....... +.+..+.+.+||.
T Consensus 299 -~~~~l~~~~g~~H~i~~E~~-~~~v~~~i~~wL~ 331 (332)
T TIGR01607 299 -SNKELHTLEDMDHVITIEPG-NEEVLKKIIEWIS 331 (332)
T ss_pred -CCcEEEEECCCCCCCccCCC-HHHHHHHHHHHhh
Confidence 24577889999999876543 3567778889985
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-14 Score=142.84 Aligned_cols=208 Identities=16% Similarity=0.055 Sum_probs=118.5
Q ss_pred CCcEEEEecCCCCCcCCcc-ccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPT-FSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
..|.||++||.......+. +...+.. +.+.||.|+++|+||.|........ ........+|+.+.++.+
T Consensus 29 ~~~~ivllHG~~~~~~~~~~~~~~~~~-l~~~~~~vi~~D~~G~G~S~~~~~~---~~~~~~~~~~l~~~l~~l------ 98 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGWSNYYRNIGP-FVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL------ 98 (282)
T ss_pred CCCeEEEECCCCCchhhHHHHHHHHHH-HHhCCCEEEEECCCCCCCCCCCcCc---ccccchhHHHHHHHHHHc------
Confidence 3467999999654433221 1122233 3446999999999996543211000 000001233444443332
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc------------ccc-ccCc--c---ccccc-CCC-C
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF------------NKF-TIAY--Y---SESEF-GSP-N 625 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~------------~~~-~~~~--~---~~~~~-g~~-~ 625 (734)
+.++++++|||+||+++..++.++|++++++|+.+|....... ... .... . +...+ -++ .
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 5568999999999999999999999999999987764211000 000 0000 0 00000 000 0
Q ss_pred -C--------------HHHHHHHH-h--CCcc------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q psy4818 626 -N--------------KTHFHNLL-S--YSPL------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681 (734)
Q Consensus 626 -~--------------~~~~~~~~-~--~sp~------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~ 681 (734)
. ++....+. . ..++ ..++. +++| +|+++|++|..|++..+.++++.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vlli~G~~D~~v~~~~~~~~~~~~~~-- 251 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGE----IKAK-TLVTWGRDDRFVPLDHGLKLLWNMPD-- 251 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhh----CCCC-EEEEEccCCCcCCchhHHHHHHhCCC--
Confidence 0 01111111 0 1111 11222 7788 99999999999999888888776653
Q ss_pred CCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 682 GSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+++++++++||....... .+..+.+.+||.
T Consensus 252 ---------~~~~~i~~agH~~~~e~p--~~~~~~i~~fl~ 281 (282)
T TIGR03343 252 ---------AQLHVFSRCGHWAQWEHA--DAFNRLVIDFLR 281 (282)
T ss_pred ---------CEEEEeCCCCcCCcccCH--HHHHHHHHHHhh
Confidence 377889999999865544 355566778874
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=128.96 Aligned_cols=230 Identities=15% Similarity=0.140 Sum_probs=148.6
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccccc---
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK--- 544 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~--- 544 (734)
+|.+-+.+++.|.+.+ .+.|+||++||+.++.....-...+-.+.++.||.|+.|| ++...|...+...+
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~p 115 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFGP 115 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCCc
Confidence 5677899999999863 4459999999987664322212234456677899999993 46667755444433
Q ss_pred -----CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc-hhc-cccccccCccc
Q psy4818 545 -----KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL-DML-RFNKFTIAYYS 617 (734)
Q Consensus 545 -----~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~-d~~-~~~~~~~~~~~ 617 (734)
+..++..+.+.+..|+.+.-+||.||.|.|.|+||.|+.+++..+|++|.++...++.. +-. ....... ..
T Consensus 116 ~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~~rp~--~~ 193 (312)
T COG3509 116 ADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTPPRPV--SV 193 (312)
T ss_pred ccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCCCCch--hH
Confidence 33456677888999999888999999999999999999999999999999998888765 211 1111000 00
Q ss_pred ccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC--------------
Q psy4818 618 ESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS-------------- 683 (734)
Q Consensus 618 ~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~-------------- 683 (734)
+..-|.++. ..|++-=. .| |-+|..|..|+..+..+..+++.....-
T Consensus 194 m~~~G~~Dp---------~~p~~gG~-------~~---~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~ 254 (312)
T COG3509 194 MAFHGTADP---------LNPYHGGG-------VP---IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTD 254 (312)
T ss_pred HHhcCCCCC---------CCCCCCCC-------cc---cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCcccce
Confidence 011122211 12332211 11 6788888877555555555555332100
Q ss_pred --CCCCCCcEEEEEeCCCCCCCCCchHH----------hHHHHHHHHHHHHHHc
Q psy4818 684 --LPYQKNPLLLRVEQDAGHGQGTPLMK----------SIEEMTDIYVFLMKSL 725 (734)
Q Consensus 684 --~~~~~~~~~~~~~~~~gH~~~~~~~~----------~~~~~~~~~~fl~~~l 725 (734)
-..++.++++..+.+.||........ .+.....+.+|+..+-
T Consensus 255 ~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 255 YDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred eeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 01235789999999999987642211 2445667888988763
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=135.93 Aligned_cols=253 Identities=16% Similarity=0.179 Sum_probs=150.8
Q ss_pred CCCCcEEEEEEeCCC----CceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 150 SDNGKHFAYCLSKSG----SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 150 SPDG~~la~~~~~~g----~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
||||+++++..+... +-...++++|+++++..+..........+.|||||+.|+|++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~----------------- 63 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDN----------------- 63 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETT-----------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecC-----------------
Confidence 899999999776421 22368999999999865544443344789999999999999842
Q ss_pred EEEEEECCCCCCCCeeEEec--------CC-----C-CeeEEEEEEecCCcEEEEEEecCCCC-----------------
Q psy4818 226 KIYYHVLGTEQDKDIPVVEF--------PN-----G-RSLGLHSEVTDCGRYLLVSTSNNTQG----------------- 274 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~--------~~-----~-~~~~~~~~~SpDG~~l~~~~~~~~~~----------------- 274 (734)
.||+.++.++... .+...+ ++ + -.....+.|||||++|+|...+....
T Consensus 64 nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~ 142 (353)
T PF00930_consen 64 NLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPE 142 (353)
T ss_dssp EEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-E
T ss_pred ceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCc
Confidence 5888876654221 111111 10 0 01124678999999999976322110
Q ss_pred ---------------ceEEEEeCCCCCCCcccCCCCcee-eeccccceEEE-EEecCCeEEE-EeCCCCCCceEEEEecC
Q psy4818 275 ---------------SDLHYFDLHSLPDGKISGKFPLKT-VIPGMDHHHEI-IANNGPELIV-KTTKNAPKGKVVTINLN 336 (734)
Q Consensus 275 ---------------~~i~~~d~~~~~~~~l~~~~~~~~-l~~~~~~~~~~-~s~dg~~l~~-~s~~~~~~~~l~~~d~~ 336 (734)
.+|++++++++....+. +.. +.........+ |++|++++++ ..++......|+.+|++
T Consensus 143 ~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~----~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 143 VESIRYPKAGDPNPRVSLFVVDLASGKTTELD----PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp EEEEE--BTTS---EEEEEEEESSSTCCCEE-------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred ccccccCCCCCcCCceEEEEEECCCCcEEEee----eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence 26777777763221110 000 01111111223 9999985554 46787778889999998
Q ss_pred CCCCCCceEeecCCCCcee---EEE-EE-eeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEe-eccCcccce
Q psy4818 337 NPCEKNWKTLIPEDENRTL---DVV-AA-VANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITH-ISGRRKYNE 410 (734)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~---~~~-~~-~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~-~~~~~d~~~ 410 (734)
++. .+.+..+....-+ ... .+ .+++.+++...++|..+|++++.. |...+.|+.....|.. +.++.+++.
T Consensus 219 tg~---~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~-~~~~~~lT~G~~~V~~i~~~d~~~~~ 294 (353)
T PF00930_consen 219 TGE---TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD-GGKPRQLTSGDWEVTSILGWDEDNNR 294 (353)
T ss_dssp TTT---CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT-SSEEEESS-SSS-EEEEEEEECTSSE
T ss_pred CCc---eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc-ccceeccccCceeecccceEcCCCCE
Confidence 765 2333333222111 122 23 355788888889999999999995 5445788866555633 456677788
Q ss_pred EEEEEecCCCCc--eEEEEeC
Q psy4818 411 VFYGFTSFLQPG--TIYHCNI 429 (734)
Q Consensus 411 l~~~~ss~~~P~--~~~~~d~ 429 (734)
++|..+. ..|. .+|++++
T Consensus 295 iyf~a~~-~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 295 IYFTANG-DNPGERHLYRVSL 314 (353)
T ss_dssp EEEEESS-GGTTSBEEEEEET
T ss_pred EEEEecC-CCCCceEEEEEEe
Confidence 8877665 3354 4888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=133.28 Aligned_cols=235 Identities=12% Similarity=0.006 Sum_probs=137.7
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
+.+.+.. +|..+.+++..|.+ ...+.||++|||+...... .....++..|+++||.|+++|+||.|......
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~----~~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~-- 75 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGA----SHTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN-- 75 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCC----CCCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC--
Confidence 4566764 56789999999864 2345777778876544322 11223456777789999999999966432110
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc--------
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK-------- 610 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-------- 610 (734)
.......+|+.+++++|.++. ...++|+++|+|+||++++.++.. +..++++|+.+|.+.......
T Consensus 76 ----~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~~ 149 (274)
T TIGR03100 76 ----LGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHYY 149 (274)
T ss_pred ----CCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHHH
Confidence 111234578999999987651 123579999999999999988765 567899999998753221100
Q ss_pred ---cccCccccccc-CCCCCHHHHHHHHh----CCccC--------------CCCCCCCCccCCcEEEEecCCCCCCCCh
Q psy4818 611 ---FTIAYYSESEF-GSPNNKTHFHNLLS----YSPLH--------------NIKVPPNNTQYPATLVLTGDHDDRVPPL 668 (734)
Q Consensus 611 ---~~~~~~~~~~~-g~~~~~~~~~~~~~----~sp~~--------------~~~~p~~~~~~P~~Li~~g~~D~~v~~~ 668 (734)
...+..|...+ |.....+....+.. ..+.. .+.. ++.| +|+++|..|...+..
T Consensus 150 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~P-~ll~~g~~D~~~~~~ 224 (274)
T TIGR03100 150 LGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLER----FQGP-VLFILSGNDLTAQEF 224 (274)
T ss_pred HHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHh----cCCc-EEEEEcCcchhHHHH
Confidence 00011111111 11110100111111 11110 1111 5667 999999999764211
Q ss_pred H-----HHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 669 H-----SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 669 ~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
. +.++.+.+. ...+++..+++++|....... +.+..+.+.+||.
T Consensus 225 ~~~~~~~~~~~~~l~---------~~~v~~~~~~~~~H~l~~e~~-~~~v~~~i~~wL~ 273 (274)
T TIGR03100 225 ADSVLGEPAWRGALE---------DPGIERVEIDGADHTFSDRVW-REWVAARTTEWLR 273 (274)
T ss_pred HHHhccChhhHHHhh---------cCCeEEEecCCCCcccccHHH-HHHHHHHHHHHHh
Confidence 1 012222222 235788999999997754433 3577888999985
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=128.03 Aligned_cols=184 Identities=13% Similarity=0.038 Sum_probs=114.5
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHh--cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRH--FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
|.||++||..++...+... .+..++.+ .+|.|+++|.||. + ++..+.+..++++. +
T Consensus 2 p~illlHGf~ss~~~~~~~-~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~--~ 59 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKAT-LLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH--G 59 (190)
T ss_pred CeEEEECCCCCCcchHHHH-HHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc--C
Confidence 6899999976555432211 13355544 3799999999983 2 24555566666552 3
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccC--CCCCHHHHHHHHhCCccCCCCC
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG--SPNNKTHFHNLLSYSPLHNIKV 644 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~sp~~~~~~ 644 (734)
.+++.++|+|+||++++.++.++|. + +|+.+|..+.......-.+.......+ .+...+.++.++++.+.. ++
T Consensus 60 ~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-i~- 134 (190)
T PRK11071 60 GDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQIDP-LE- 134 (190)
T ss_pred CCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCCcc-CC-
Confidence 3579999999999999999999883 3 466676665322211101110000001 112234455555554433 33
Q ss_pred CCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 645 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 645 p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
...| ++|+||++|..||+.++.+++++. .+++.++++|.+... .+....+.+|+.
T Consensus 135 ----~~~~-v~iihg~~De~V~~~~a~~~~~~~--------------~~~~~~ggdH~f~~~----~~~~~~i~~fl~ 189 (190)
T PRK11071 135 ----SPDL-IWLLQQTGDEVLDYRQAVAYYAAC--------------RQTVEEGGNHAFVGF----ERYFNQIVDFLG 189 (190)
T ss_pred ----Chhh-EEEEEeCCCCcCCHHHHHHHHHhc--------------ceEEECCCCcchhhH----HHhHHHHHHHhc
Confidence 2333 899999999999999999998842 245669999999643 245556777763
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=120.10 Aligned_cols=199 Identities=20% Similarity=0.176 Sum_probs=128.1
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCC--CCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG--YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg--~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
.++.++..-|. +.+..-.++ ....|+.|..|=- ++..+.+.-....+..|.++||+++.+|+||-|..
T Consensus 5 ~~v~i~Gp~G~-le~~~~~~~----~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S----- 74 (210)
T COG2945 5 PTVIINGPAGR-LEGRYEPAK----TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS----- 74 (210)
T ss_pred CcEEecCCccc-ceeccCCCC----CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc-----
Confidence 34455444442 444333222 2456666666532 23333332222345667788999999999995543
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCccc
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYS 617 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 617 (734)
+|..+.+..+.+|..+|++||.++.- +..-..+.|+|.|+++++.++.+.|+. ...|+..|..+...
T Consensus 75 -~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~~d---------- 141 (210)
T COG2945 75 -QGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINAYD---------- 141 (210)
T ss_pred -cCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCchh----------
Confidence 34455677789999999999988742 322357899999999999999998875 45566665554110
Q ss_pred ccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC
Q psy4818 618 ESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697 (734)
Q Consensus 618 ~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 697 (734)
+ +-+. | ...| .|+++|+.|++|.+...+++.+ +.+..+++.+
T Consensus 142 ------------f------s~l~----P---~P~~-~lvi~g~~Ddvv~l~~~l~~~~------------~~~~~~i~i~ 183 (210)
T COG2945 142 ------------F------SFLA----P---CPSP-GLVIQGDADDVVDLVAVLKWQE------------SIKITVITIP 183 (210)
T ss_pred ------------h------hhcc----C---CCCC-ceeEecChhhhhcHHHHHHhhc------------CCCCceEEec
Confidence 1 0011 1 3344 9999999998888776665554 3456788899
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 698 DAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 698 ~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+++|+|.... .+..+.+.+||.
T Consensus 184 ~a~HFF~gKl---~~l~~~i~~~l~ 205 (210)
T COG2945 184 GADHFFHGKL---IELRDTIADFLE 205 (210)
T ss_pred CCCceecccH---HHHHHHHHHHhh
Confidence 9999997543 344455677773
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-12 Score=130.15 Aligned_cols=225 Identities=18% Similarity=0.164 Sum_probs=139.1
Q ss_pred CCCCCceEEEEE--EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccC
Q psy4818 452 FEPTLFQTKQVY--FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGG 529 (734)
Q Consensus 452 ~~~~~~~~~~~~--~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~ 529 (734)
|+...+.+.... +.+.-...+++.+++|.. .+.+|+||++||+..... .|. ..+..|+++||+|+++|++|.
T Consensus 17 ~~~g~~~~~~~~~~~~~~~~~~~p~~v~~P~~---~g~~PvVv~lHG~~~~~~--~y~-~l~~~Las~G~~VvapD~~g~ 90 (313)
T PLN00021 17 FETGKFPVELITVDESSRPSPPKPLLVATPSE---AGTYPVLLFLHGYLLYNS--FYS-QLLQHIASHGFIVVAPQLYTL 90 (313)
T ss_pred cccCCceeEEEEecCCCcCCCCceEEEEeCCC---CCCCCEEEEECCCCCCcc--cHH-HHHHHHHhCCCEEEEecCCCc
Confidence 444444444433 322334578999999975 578999999999855422 232 345667778999999999873
Q ss_pred CCCCchhhhccccccCCCchhHHHHHHHHHHHc--------CCCCCCcEEEEEcChHHHHHHHHHhcCCC-----ceeEE
Q psy4818 530 GELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK--------KYTKPKYITIMGGSNGGLLVGACLNQRPE-----LYGAA 596 (734)
Q Consensus 530 ~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-----~~~a~ 596 (734)
+.. .....++|..++++|+.+. ...|+++++|+|||+||++++.++.++++ .|+++
T Consensus 91 ~~~-----------~~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~al 159 (313)
T PLN00021 91 AGP-----------DGTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSAL 159 (313)
T ss_pred CCC-----------CchhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeE
Confidence 211 1123456677777777652 23678899999999999999999988775 57888
Q ss_pred EEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCC-----CCC----C
Q psy4818 597 LILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDD-----RVP----P 667 (734)
Q Consensus 597 v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~-----~v~----~ 667 (734)
|...|+..+.... .+ .|.. ..+.| +.. ++..| +||+++..|. .+| .
T Consensus 160 i~ldPv~g~~~~~-~~----------~p~i-------l~~~~--~s~----~~~~P-~liig~g~~~~~~~~~~p~~ap~ 214 (313)
T PLN00021 160 IGLDPVDGTSKGK-QT----------PPPV-------LTYAP--HSF----NLDIP-VLVIGTGLGGEPRNPLFPPCAPD 214 (313)
T ss_pred Eeecccccccccc-CC----------CCcc-------cccCc--ccc----cCCCC-eEEEecCCCcccccccccccCCC
Confidence 8888875432110 00 0100 01111 111 14556 8999888663 222 3
Q ss_pred h-HHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCC--------------------Cch-HHhHHHHHHHHHHHHHHc
Q psy4818 668 L-HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG--------------------TPL-MKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 668 ~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~--------------------~~~-~~~~~~~~~~~~fl~~~l 725 (734)
. +-.+++.+. ..+..+.+.+++||.-. ..+ ..+......+.+||..+|
T Consensus 215 ~~~~~~f~~~~----------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l 284 (313)
T PLN00021 215 GVNHAEFFNEC----------KAPAVHFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYL 284 (313)
T ss_pred CCCHHHHHHhc----------CCCeeeeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3 236666554 44678888899999532 001 112233445799999999
Q ss_pred CCC
Q psy4818 726 GLK 728 (734)
Q Consensus 726 ~~~ 728 (734)
..+
T Consensus 285 ~~~ 287 (313)
T PLN00021 285 EGD 287 (313)
T ss_pred cCc
Confidence 654
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=130.56 Aligned_cols=174 Identities=13% Similarity=0.126 Sum_probs=121.3
Q ss_pred CCCcEEeEEEEEeccccCCCCC-cEEEEecCCCCCcCCccccHHHHHHHHhc----------CeEEEEEecccCCCCCch
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRN-PVIIYGYGGYGVSVLPTFSISRCMFLRHF----------NGIYAIPNIRGGGELGED 535 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~-P~vv~~hGg~~~~~~~~~~~~~~~~l~~~----------G~~v~~~~~rG~~~~g~~ 535 (734)
..|.++...+|.|+++.+++++ |++|++||+....... ...++... ++-|++|. |..-
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-----~~~l~sg~gaiawa~pedqcfVlAPQ------y~~i 237 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-----DKVLSSGIGAIAWAGPEDQCFVLAPQ------YNPI 237 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchh-----hhhhhcCccceeeecccCceEEEccc------cccc
Confidence 4678999999999999999988 9999999985443321 11222222 33444444 2221
Q ss_pred hhhccccccCCCchhHHHHHHH-HHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAE-YMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 614 (734)
|... ...-.+.....+..++ -|.++..+|.+||.++|.|+||+.+.+++.++||+|+|++..+|=-|-
T Consensus 238 f~d~--e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~--------- 306 (387)
T COG4099 238 FADS--EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR--------- 306 (387)
T ss_pred cccc--ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch---------
Confidence 2111 1111223344555555 666778899999999999999999999999999999999988873321
Q ss_pred cccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEE
Q psy4818 615 YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLR 694 (734)
Q Consensus 615 ~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 694 (734)
.. ..+++ .+.| +.+.|+.+|..+|.+.+.-++++|+.. ++++.+.
T Consensus 307 ------------v~------lv~~l---------k~~p-iWvfhs~dDkv~Pv~nSrv~y~~lk~~-------~~kv~Yt 351 (387)
T COG4099 307 ------------VY------LVRTL---------KKAP-IWVFHSSDDKVIPVSNSRVLYERLKAL-------DRKVNYT 351 (387)
T ss_pred ------------hh------hhhhh---------ccCc-eEEEEecCCCccccCcceeehHHHHhh-------ccccchh
Confidence 00 01121 2344 999999999999999999999999998 7777666
Q ss_pred EeC
Q psy4818 695 VEQ 697 (734)
Q Consensus 695 ~~~ 697 (734)
.|.
T Consensus 352 af~ 354 (387)
T COG4099 352 AFL 354 (387)
T ss_pred hhh
Confidence 554
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=141.32 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=97.8
Q ss_pred CCCCceEEEEEEEcCCCcEEeEEEEEecccc-CCCCCcEEEEecCCCCCcCCcccc---HHHHHHHHhcCeEEEEEeccc
Q psy4818 453 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGAL-RNRRNPVIIYGYGGYGVSVLPTFS---ISRCMFLRHFNGIYAIPNIRG 528 (734)
Q Consensus 453 ~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~-~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG 528 (734)
...+|.+|+..+++.||..+.+.-+.+.... ...+.|+||++||...++..+... ...+..|+++||.|+++|.||
T Consensus 38 ~~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG 117 (395)
T PLN02872 38 HPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG 117 (395)
T ss_pred HHcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence 3568899999999999988877665432211 123468899999987666554322 123445777899999999999
Q ss_pred CCC-CCchhhhcc-cc----ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEEEc
Q psy4818 529 GGE-LGEDWHNAG-RL----LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE---LYGAALIL 599 (734)
Q Consensus 529 ~~~-~g~~~~~~~-~~----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v~~ 599 (734)
.+. +|....... .. .+......|+.++++++.+. ..+++.++|||+||.+++.++ .+|+ .++++++.
T Consensus 118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~---~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l 193 (395)
T PLN02872 118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSI---TNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALL 193 (395)
T ss_pred cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhc---cCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHh
Confidence 652 342222211 11 11122346999999998764 236899999999999998666 4677 46677777
Q ss_pred CCcc
Q psy4818 600 VGAL 603 (734)
Q Consensus 600 ~~~~ 603 (734)
+|+.
T Consensus 194 ~P~~ 197 (395)
T PLN02872 194 CPIS 197 (395)
T ss_pred cchh
Confidence 7753
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-13 Score=122.12 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=103.3
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 569 (734)
+||++||+.+... .|. .+...|+++||.|+.+|+||.+... ...+..++++++.+.. .++++
T Consensus 1 ~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~ 62 (145)
T PF12695_consen 1 VVVLLHGWGGSRR--DYQ-PLAEALAEQGYAVVAFDYPGHGDSD--------------GADAVERVLADIRAGY-PDPDR 62 (145)
T ss_dssp EEEEECTTTTTTH--HHH-HHHHHHHHTTEEEEEESCTTSTTSH--------------HSHHHHHHHHHHHHHH-CTCCE
T ss_pred CEEEECCCCCCHH--HHH-HHHHHHHHCCCEEEEEecCCCCccc--------------hhHHHHHHHHHHHhhc-CCCCc
Confidence 5899999865432 343 3456677789999999999955431 0124445555543322 28899
Q ss_pred EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCc
Q psy4818 570 ITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNT 649 (734)
Q Consensus 570 i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~ 649 (734)
|+++|+|+||.++..++.+. ..++++|+..|+.+ .+.+ .. .
T Consensus 63 i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~----------------------~~~~---------~~-------~ 103 (145)
T PF12695_consen 63 IILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD----------------------SEDL---------AK-------I 103 (145)
T ss_dssp EEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG----------------------CHHH---------TT-------T
T ss_pred EEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc----------------------hhhh---------hc-------c
Confidence 99999999999999999987 57899999988311 0111 11 3
Q ss_pred cCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCC
Q psy4818 650 QYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702 (734)
Q Consensus 650 ~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~ 702 (734)
+.| +|+++|++|..+++++..+++++++ .+.+++++++++|+
T Consensus 104 ~~p-v~~i~g~~D~~~~~~~~~~~~~~~~----------~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 104 RIP-VLFIHGENDPLVPPEQVRRLYEALP----------GPKELYIIPGAGHF 145 (145)
T ss_dssp TSE-EEEEEETT-SSSHHHHHHHHHHHHC----------SSEEEEEETTS-TT
T ss_pred CCc-EEEEEECCCCcCCHHHHHHHHHHcC----------CCcEEEEeCCCcCc
Confidence 344 9999999999999999988888875 35789999999995
|
... |
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=134.62 Aligned_cols=203 Identities=15% Similarity=0.091 Sum_probs=119.7
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|+||++||...... .|. .+...|. .||.|+++|+||.|.... ......++++.+.+..+++. .+
T Consensus 12 ~~~~li~~hg~~~~~~--~~~-~~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~i~~--~~ 77 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR--MWD-PVLPALT-PDFRVLRYDKRGHGLSDA--------PEGPYSIEDLADDVLALLDH--LG 77 (251)
T ss_pred CCCeEEEEcCcccchh--hHH-HHHHHhh-cccEEEEecCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHH--hC
Confidence 5689999999644332 233 3456666 599999999999654321 11234567777666666654 24
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc----------ccc-------Ccccc-cccCCCCCH-
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK----------FTI-------AYYSE-SEFGSPNNK- 627 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----------~~~-------~~~~~-~~~g~~~~~- 627 (734)
.+++.++|+|+||++++.++.++|+.++++|+..+...+..... ... ...|. ..+..+...
T Consensus 78 ~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
T TIGR02427 78 IERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPAR 157 (251)
T ss_pred CCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHH
Confidence 46899999999999999999999999888887765432111000 000 00000 011111100
Q ss_pred -HHHH----------------HHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCc
Q psy4818 628 -THFH----------------NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690 (734)
Q Consensus 628 -~~~~----------------~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~ 690 (734)
+.+. .+........+.+ ++.| +|+++|++|..+|++...++.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-vlii~g~~D~~~~~~~~~~~~~~~~~----------- 221 (251)
T TIGR02427 158 LDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGA----IAVP-TLCIAGDQDGSTPPELVREIADLVPG----------- 221 (251)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhh----cCCC-eEEEEeccCCcCChHHHHHHHHhCCC-----------
Confidence 0000 0111111122222 5677 99999999999999877766655432
Q ss_pred EEEEEeCCCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 691 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
.++++++++||...-... .+....+.+||
T Consensus 222 ~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPCVEQP--EAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCcccccCh--HHHHHHHHHHh
Confidence 367889999998754332 23344455554
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=122.36 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=125.0
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh---ccccccC--CCchhHHHHHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN---AGRLLKK--QNCFDDFQAAAEYM 559 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~---~~~~~~~--~~~~~D~~~~~~~l 559 (734)
+...|+||+.||-. .....|.+ +..++.- .+.++.++-+=.-+.+..|.. .+..+.+ ....+.+.+.++.+
T Consensus 15 ~p~~~~iilLHG~G--gde~~~~~-~~~~~~P-~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 15 DPAAPLLILLHGLG--GDELDLVP-LPELILP-NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCcEEEEEecCC--CChhhhhh-hhhhcCC-CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 45678999999953 33334444 3344443 555655433322222222222 2211110 12233444555555
Q ss_pred HHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCcc
Q psy4818 560 INKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPL 639 (734)
Q Consensus 560 ~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~ 639 (734)
.++.-+|++|+.+.|+|+|+.+++.++.++|++|+++|+..|+.-... . +.
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~--------------------~---------~~ 141 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP--------------------E---------LL 141 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------c---------cc
Confidence 666668999999999999999999999999999999999888652110 0 00
Q ss_pred CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHH
Q psy4818 640 HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYV 719 (734)
Q Consensus 640 ~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~ 719 (734)
.+. ...| +|++||..|++||..++.++.+.|++. |..++...++ .||.... ++.+.+.+
T Consensus 142 ~~~------~~~p-ill~hG~~Dpvvp~~~~~~l~~~l~~~-------g~~v~~~~~~-~GH~i~~------e~~~~~~~ 200 (207)
T COG0400 142 PDL------AGTP-ILLSHGTEDPVVPLALAEALAEYLTAS-------GADVEVRWHE-GGHEIPP------EELEAARS 200 (207)
T ss_pred ccc------CCCe-EEEeccCcCCccCHHHHHHHHHHHHHc-------CCCEEEEEec-CCCcCCH------HHHHHHHH
Confidence 111 2334 999999999999999999999999998 9999999999 8998853 44556677
Q ss_pred HHHHHc
Q psy4818 720 FLMKSL 725 (734)
Q Consensus 720 fl~~~l 725 (734)
|+.+.+
T Consensus 201 wl~~~~ 206 (207)
T COG0400 201 WLANTL 206 (207)
T ss_pred HHHhcc
Confidence 887754
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-12 Score=131.59 Aligned_cols=203 Identities=15% Similarity=0.121 Sum_probs=121.6
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|+||++||..+... .|.. +...|++ +|.|+.+|+||.|..... ......++++.+.+..++++. +.
T Consensus 28 ~~~vv~~hG~~~~~~--~~~~-~~~~l~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~i~~~--~~ 94 (278)
T TIGR03056 28 GPLLLLLHGTGASTH--SWRD-LMPPLAR-SFRVVAPDLPGHGFTRAP-------FRFRFTLPSMAEDLSALCAAE--GL 94 (278)
T ss_pred CCeEEEEcCCCCCHH--HHHH-HHHHHhh-CcEEEeecCCCCCCCCCc-------cccCCCHHHHHHHHHHHHHHc--CC
Confidence 588999999765443 2333 4466765 899999999996542211 111345677777766666542 33
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc-c--------c----cccC-----------ccccccc--
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF-N--------K----FTIA-----------YYSESEF-- 621 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~-~--------~----~~~~-----------~~~~~~~-- 621 (734)
+++.|+|+|+||.+++.++.++|++++++|+.++..+.... . . .... ..+...+
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 57899999999999999999999988888877664331110 0 0 0000 0000000
Q ss_pred -CCCCCHH---HHH--------------HHHhCC--cc-CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q psy4818 622 -GSPNNKT---HFH--------------NLLSYS--PL-HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680 (734)
Q Consensus 622 -g~~~~~~---~~~--------------~~~~~s--p~-~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~ 680 (734)
+...... .+. .+..++ ++ ..++. +++| +|+++|++|..||+.++..+.+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~lii~g~~D~~vp~~~~~~~~~~~~~- 248 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPR----ITIP-LHLIAGEEDKAVPPDESKRAATRVPT- 248 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhccc----CCCC-EEEEEeCCCcccCHHHHHHHHHhccC-
Confidence 0000000 000 011111 00 11222 6677 99999999999999887776655433
Q ss_pred hCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
+++.+++++||.+..... .+....+.+|+
T Consensus 249 ----------~~~~~~~~~gH~~~~e~p--~~~~~~i~~f~ 277 (278)
T TIGR03056 249 ----------ATLHVVPGGGHLVHEEQA--DGVVGLILQAA 277 (278)
T ss_pred ----------CeEEEECCCCCcccccCH--HHHHHHHHHHh
Confidence 367888999998765433 35555667775
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=133.15 Aligned_cols=122 Identities=21% Similarity=0.195 Sum_probs=80.0
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
++...||.+|..... + ....+.||++||+++..... .....+...+|.|+++|+||.|... .. .
T Consensus 8 ~~~~~~~~~l~y~~~---g---~~~~~~lvllHG~~~~~~~~----~~~~~~~~~~~~vi~~D~~G~G~S~---~~---~ 71 (306)
T TIGR01249 8 YLNVSDNHQLYYEQS---G---NPDGKPVVFLHGGPGSGTDP----GCRRFFDPETYRIVLFDQRGCGKST---PH---A 71 (306)
T ss_pred eEEcCCCcEEEEEEC---c---CCCCCEEEEECCCCCCCCCH----HHHhccCccCCEEEEECCCCCCCCC---CC---C
Confidence 344557777665332 1 11235688999987664321 2223344459999999999954322 11 1
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.......+|+.+.+..+.+. ...+++.++|+|+||++++.++.++|+.++++|+..++
T Consensus 72 ~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 72 CLEENTTWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred CcccCCHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 11123466777777777665 23457999999999999999999999988888876543
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=130.75 Aligned_cols=221 Identities=17% Similarity=0.133 Sum_probs=130.4
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++...... + +...|.||++||..+... .|.. +...|.+ +|.|+++|+||.|... .. ....
T Consensus 10 ~~~~~~~~~~~--~---~~~~~plvllHG~~~~~~--~w~~-~~~~L~~-~~~vi~~Dl~G~G~S~---~~-----~~~~ 72 (276)
T TIGR02240 10 DGQSIRTAVRP--G---KEGLTPLLIFNGIGANLE--LVFP-FIEALDP-DLEVIAFDVPGVGGSS---TP-----RHPY 72 (276)
T ss_pred CCcEEEEEEec--C---CCCCCcEEEEeCCCcchH--HHHH-HHHHhcc-CceEEEECCCCCCCCC---CC-----CCcC
Confidence 66666554421 1 123367899999655443 3433 3455664 8999999999965432 11 1223
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc------c---c-cc--ccCc
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR------F---N-KF--TIAY 615 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~------~---~-~~--~~~~ 615 (734)
.++++.+.+..+++. .+.+++.++|+|+||++++.++.++|++++++|+.++...... . . .. ....
T Consensus 73 ~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (276)
T TIGR02240 73 RFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQP 150 (276)
T ss_pred cHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhcc
Confidence 466666665555554 3456799999999999999999999999999998876543110 0 0 00 0000
Q ss_pred c----ccc-ccCCC--CCHHHH-----------------HHHH--hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH
Q psy4818 616 Y----SES-EFGSP--NNKTHF-----------------HNLL--SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669 (734)
Q Consensus 616 ~----~~~-~~g~~--~~~~~~-----------------~~~~--~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~ 669 (734)
. ... .++.. .+++.. ..+. .......+.. +++| +|+++|++|+.+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~v~~~~ 225 (276)
T TIGR02240 151 SHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHK----IQQP-TLVLAGDDDPIIPLIN 225 (276)
T ss_pred ccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhc----CCCC-EEEEEeCCCCcCCHHH
Confidence 0 000 00100 000000 0000 0111111233 7777 9999999999999998
Q ss_pred HHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 670 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+.++.+.+... ++.++++ ||....... .+....+.+|+.+.-.
T Consensus 226 ~~~l~~~~~~~-----------~~~~i~~-gH~~~~e~p--~~~~~~i~~fl~~~~~ 268 (276)
T TIGR02240 226 MRLLAWRIPNA-----------ELHIIDD-GHLFLITRA--EAVAPIIMKFLAEERQ 268 (276)
T ss_pred HHHHHHhCCCC-----------EEEEEcC-CCchhhccH--HHHHHHHHHHHHHhhh
Confidence 88787665433 5566665 998765433 4666778888887543
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=132.22 Aligned_cols=108 Identities=16% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.||++||++++... +...+..++.+.||.|+++|.||.|... ... .......++++.+.+..+++. .+
T Consensus 24 ~~~~vl~~hG~~g~~~~--~~~~~~~~l~~~g~~vi~~d~~G~G~s~---~~~--~~~~~~~~~~~~~~~~~~~~~--~~ 94 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSHE--YLENLRELLKEEGREVIMYDQLGCGYSD---QPD--DSDELWTIDYFVDELEEVREK--LG 94 (288)
T ss_pred CCCeEEEEcCCCCccHH--HHHHHHHHHHhcCCEEEEEcCCCCCCCC---CCC--cccccccHHHHHHHHHHHHHH--cC
Confidence 35788999998776532 2233456666569999999999965421 100 001124566777766666654 33
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
.+++.++|+|+||.+++.++.++|+.++++|+..++.
T Consensus 95 ~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 95 LDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred CCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 4569999999999999999999999999999877643
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-13 Score=134.75 Aligned_cols=143 Identities=22% Similarity=0.183 Sum_probs=90.3
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc------------C---CccccHHHHHHHHhcC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS------------V---LPTFSISRCMFLRHFN 518 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~------------~---~~~~~~~~~~~l~~~G 518 (734)
.++|..|++.|.+.++..++++++.|++. .++.|.||++||-.+.. . .......+...|+++|
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~G 160 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRG 160 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCC
Confidence 46789999999999999999999999985 68899999988732110 0 0011122456788899
Q ss_pred eEEEEEecccCCCCCchh-----------------hhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHH
Q psy4818 519 GIYAIPNIRGGGELGEDW-----------------HNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 581 (734)
Q Consensus 519 ~~v~~~~~rG~~~~g~~~-----------------~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~ 581 (734)
|+|+++|.+|=|+.|..= ...|+...+...+ |.+.+++||..+..+|++||+++|+|+||+.
T Consensus 161 YVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~-ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 161 YVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAW-DDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp SEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHH-HHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHH-HHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 999999999855544310 0011111122234 4556999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEEcC
Q psy4818 582 VGACLNQRPELYGAALILV 600 (734)
Q Consensus 582 ~~~~~~~~p~~~~a~v~~~ 600 (734)
++++++..+ +++|+|+.+
T Consensus 240 a~~LaALDd-RIka~v~~~ 257 (390)
T PF12715_consen 240 AWWLAALDD-RIKATVANG 257 (390)
T ss_dssp HHHHHHH-T-T--EEEEES
T ss_pred HHHHHHcch-hhHhHhhhh
Confidence 999999976 456666544
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=129.76 Aligned_cols=206 Identities=14% Similarity=0.082 Sum_probs=117.9
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
.+..|+||++||.++... .|.. +...|++ +|.|+.+|.||.|.... . ...++++...-+..+++.
T Consensus 13 ~~~~~~iv~lhG~~~~~~--~~~~-~~~~l~~-~~~vi~~D~~G~G~s~~---~------~~~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 13 PHNNSPIVLVHGLFGSLD--NLGV-LARDLVN-DHDIIQVDMRNHGLSPR---D------PVMNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCEEEECCCCCchh--HHHH-HHHHHhh-CCeEEEECCCCCCCCCC---C------CCCCHHHHHHHHHHHHHH--
Confidence 456789999999876653 2333 3445654 89999999999664331 1 112444544433333333
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC--Ccchhcccc-----------ccccC------ccccc------
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV--GALDMLRFN-----------KFTIA------YYSES------ 619 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~--~~~d~~~~~-----------~~~~~------~~~~~------ 619 (734)
...+++.++|||+||.+++.++.++|++++++|+.. |........ ..... ..+..
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 244579999999999999999999999999988753 221100000 00000 00000
Q ss_pred -------ccCCCC----CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCC
Q psy4818 620 -------EFGSPN----NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK 688 (734)
Q Consensus 620 -------~~g~~~----~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~ 688 (734)
.+.... .+.....+.....+..+.. ++.| +|+++|++|..|+...+..+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~G~~D~~~~~~~~~~~~~~~~---------- 222 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPA----WPHP-ALFIRGGNSPYVTEAYRDDLLAQFP---------- 222 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCC----CCCC-eEEEECCCCCCCCHHHHHHHHHhCC----------
Confidence 000000 0000001111111112222 5667 9999999999998766665555443
Q ss_pred CcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 689 NPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 689 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.+++.+++++||....... .+....+..||.+
T Consensus 223 -~~~~~~~~~~gH~~~~~~p--~~~~~~l~~fl~~ 254 (255)
T PRK10673 223 -QARAHVIAGAGHWVHAEKP--DAVLRAIRRYLND 254 (255)
T ss_pred -CcEEEEeCCCCCeeeccCH--HHHHHHHHHHHhc
Confidence 3477889999998754333 3455667778764
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-12 Score=121.97 Aligned_cols=237 Identities=18% Similarity=0.164 Sum_probs=145.9
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
.+...||..+......++. +...|+||..||--|++.++ |...+...+.++||.|+++|.||-++.-. .. ..
T Consensus 53 ~v~~pdg~~~~ldw~~~p~---~~~~P~vVl~HGL~G~s~s~-y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n---~~-p~ 124 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR---AAKKPLVVLFHGLEGSSNSP-YARGLMRALSRRGWLVVVFHFRGCSGEAN---TS-PR 124 (345)
T ss_pred EEEcCCCCEEEEeeccCcc---ccCCceEEEEeccCCCCcCH-HHHHHHHHHHhcCCeEEEEecccccCCcc---cC-cc
Confidence 3445566655555554322 35679999999987777776 66666677778899999999999443211 01 11
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHH-HHHHHHHhcC--CCceeEEEEcCCcchhcc-ccccccC----
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGG-LLVGACLNQR--PELYGAALILVGALDMLR-FNKFTIA---- 614 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG-~~~~~~~~~~--p~~~~a~v~~~~~~d~~~-~~~~~~~---- 614 (734)
.......+|+..+++++.++.. +.++.++|.|.|| .|+.+++.+. +-+-+|++..+|+ |+.. ......+
T Consensus 125 ~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~-Dl~~~~~~l~~~~s~~ 201 (345)
T COG0429 125 LYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF-DLEACAYRLDSGFSLR 201 (345)
T ss_pred eecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH-HHHHHHHHhcCchhhh
Confidence 1222345899999999988643 5689999999999 5555554432 2244566666664 2110 0000000
Q ss_pred --------------------------cc---------ccccc----CCC--CCHHHHHHHHhCCccCCCCCCCCCccCCc
Q psy4818 615 --------------------------YY---------SESEF----GSP--NNKTHFHNLLSYSPLHNIKVPPNNTQYPA 653 (734)
Q Consensus 615 --------------------------~~---------~~~~~----g~~--~~~~~~~~~~~~sp~~~~~~p~~~~~~P~ 653 (734)
.. -..+| ..| .-++..++++..|.+..+.. |..|
T Consensus 202 ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~----Ir~P- 276 (345)
T COG0429 202 LYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPK----IRKP- 276 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccc----cccc-
Confidence 00 00011 111 11234567888898888876 8888
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHh-hhCCCCCCCCcEEEEEeCCCCCCC-C--CchHHhHHHHHHHHHHHHHHcC
Q psy4818 654 TLVLTGDHDDRVPPLHSYKFIATLQE-KIGSLPYQKNPLLLRVEQDAGHGQ-G--TPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 654 ~Li~~g~~D~~v~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~gH~~-~--~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+||+|+.+|+.+++...- .++. . +..++|....-+||.. . +..+...-..+++.+||...+.
T Consensus 277 tLii~A~DDP~~~~~~iP----~~~~~~-------np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 277 TLIINAKDDPFMPPEVIP----KLQEML-------NPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred eEEEecCCCCCCChhhCC----cchhcC-------CCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 999999999999874322 2222 2 5678899999999943 2 2222212344568899988764
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-12 Score=129.08 Aligned_cols=207 Identities=12% Similarity=0.040 Sum_probs=121.8
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.||++||.+++... |.. ....|++++ .|+++|.||.|..... .....+++....+..+++. ..
T Consensus 26 ~g~~vvllHG~~~~~~~--w~~-~~~~L~~~~-~via~D~~G~G~S~~~--------~~~~~~~~~a~dl~~ll~~--l~ 91 (295)
T PRK03592 26 EGDPIVFLHGNPTSSYL--WRN-IIPHLAGLG-RCLAPDLIGMGASDKP--------DIDYTFADHARYLDAWFDA--LG 91 (295)
T ss_pred CCCEEEEECCCCCCHHH--HHH-HHHHHhhCC-EEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHH--hC
Confidence 34789999998765543 333 345666644 9999999996543211 1123455555555555544 23
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchh---ccc----------ccc-ccCcc-------ccc----cc
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM---LRF----------NKF-TIAYY-------SES----EF 621 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~---~~~----------~~~-~~~~~-------~~~----~~ 621 (734)
.+++.++|+|+||.+++.++.++|++++++|+.+++... ... ... ..+.. ... .+
T Consensus 92 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (295)
T PRK03592 92 LDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGS 171 (295)
T ss_pred CCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCc
Confidence 367999999999999999999999999999987763211 000 000 00000 000 00
Q ss_pred -CCCCCHHHHHHH-----------------HhCCcc--------------CCCCCCCCCccCCcEEEEecCCCCCCCChH
Q psy4818 622 -GSPNNKTHFHNL-----------------LSYSPL--------------HNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669 (734)
Q Consensus 622 -g~~~~~~~~~~~-----------------~~~sp~--------------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~ 669 (734)
.....++....+ ....+. ..+. .++.| +|+++|.+|..+++.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~P-~lii~G~~D~~~~~~~ 246 (295)
T PRK03592 172 ILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLA----TSDVP-KLLINAEPGAILTTGA 246 (295)
T ss_pred ccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhc----cCCCC-eEEEeccCCcccCcHH
Confidence 000011111111 110000 0011 26777 9999999999997666
Q ss_pred HHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 670 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
..++...+.. ..++.+++++||....... .+..+.+.+|+.+.
T Consensus 247 ~~~~~~~~~~----------~~~~~~i~~~gH~~~~e~p--~~v~~~i~~fl~~~ 289 (295)
T PRK03592 247 IRDWCRSWPN----------QLEITVFGAGLHFAQEDSP--EEIGAAIAAWLRRL 289 (295)
T ss_pred HHHHHHHhhh----------hcceeeccCcchhhhhcCH--HHHHHHHHHHHHHh
Confidence 6666544332 2367888999998875433 46667788898865
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-12 Score=126.25 Aligned_cols=204 Identities=11% Similarity=0.121 Sum_probs=119.7
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC-C
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP-K 568 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~ 568 (734)
.||++||...... .|.. ....|++.||.|+++|+||.|... .. .....+++++.+.+..+++. .+. +
T Consensus 5 ~vvllHG~~~~~~--~w~~-~~~~L~~~~~~via~Dl~G~G~S~---~~----~~~~~~~~~~a~dl~~~l~~--l~~~~ 72 (255)
T PLN02965 5 HFVFVHGASHGAW--CWYK-LATLLDAAGFKSTCVDLTGAGISL---TD----SNTVSSSDQYNRPLFALLSD--LPPDH 72 (255)
T ss_pred EEEEECCCCCCcC--cHHH-HHHHHhhCCceEEEecCCcCCCCC---CC----ccccCCHHHHHHHHHHHHHh--cCCCC
Confidence 4899999865543 3443 345565569999999999966432 11 11134466666655555554 223 4
Q ss_pred cEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc---hhc---ccc--ccccCccccc---------------------
Q psy4818 569 YITIMGGSNGGLLVGACLNQRPELYGAALILVGAL---DML---RFN--KFTIAYYSES--------------------- 619 (734)
Q Consensus 569 ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~---d~~---~~~--~~~~~~~~~~--------------------- 619 (734)
++.++|||+||.++..++.++|++++++|..++.. ... ... .......|..
T Consensus 73 ~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (255)
T PLN02965 73 KVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVR 152 (255)
T ss_pred CEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHH
Confidence 89999999999999999999999999888766541 100 000 0000000100
Q ss_pred c--cCCCCCHHHHHHHHh---CCccC---C---CC--CCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCC
Q psy4818 620 E--FGSPNNKTHFHNLLS---YSPLH---N---IK--VPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPY 686 (734)
Q Consensus 620 ~--~g~~~~~~~~~~~~~---~sp~~---~---~~--~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~ 686 (734)
. +.. ...+....... ..+.. . .. .+ .++.| +|+++|++|..+|+..+..+.+.+...
T Consensus 153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~vP-~lvi~g~~D~~~~~~~~~~~~~~~~~a------ 222 (255)
T PLN02965 153 HYYYNQ-SPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPE--AEKVP-RVYIKTAKDNLFDPVRQDVMVENWPPA------ 222 (255)
T ss_pred HHHhcC-CCHHHHHHHHHhcCCCCCcchhhhhhccchhh--cCCCC-EEEEEcCCCCCCCHHHHHHHHHhCCcc------
Confidence 0 000 00000000000 00110 0 00 00 26777 999999999999998887777665543
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 687 QKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 687 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
++.+++++||...-... .+....+.+|+.
T Consensus 223 -----~~~~i~~~GH~~~~e~p--~~v~~~l~~~~~ 251 (255)
T PLN02965 223 -----QTYVLEDSDHSAFFSVP--TTLFQYLLQAVS 251 (255)
T ss_pred -----eEEEecCCCCchhhcCH--HHHHHHHHHHHH
Confidence 67888999998865444 345555666654
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=133.35 Aligned_cols=211 Identities=14% Similarity=0.081 Sum_probs=124.1
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||..++.. .|... ...|.+ .|.|+++|.||.|..... ............++|+...+..++++-. .
T Consensus 29 ~~~vlllHG~~~~~~--~w~~~-~~~L~~-~~~vi~~DlpG~G~S~~~-~~~~~~~~~~~~~~~~a~~l~~~l~~l~--~ 101 (294)
T PLN02824 29 GPALVLVHGFGGNAD--HWRKN-TPVLAK-SHRVYAIDLLGYGYSDKP-NPRSAPPNSFYTFETWGEQLNDFCSDVV--G 101 (294)
T ss_pred CCeEEEECCCCCChh--HHHHH-HHHHHh-CCeEEEEcCCCCCCCCCC-ccccccccccCCHHHHHHHHHHHHHHhc--C
Confidence 378999999866654 34443 355665 579999999996643211 0000000123567777776666555422 3
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-----------------ccc-cCcccc-----------
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN-----------------KFT-IAYYSE----------- 618 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----------------~~~-~~~~~~----------- 618 (734)
+++.++|||+||++++.++.++|++++++|+.+|........ ... .+..+.
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKN 181 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHH
Confidence 679999999999999999999999999999887643111000 000 000000
Q ss_pred ---cccCCC--CCHHHHHH----------------HHhCCcc----CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHH
Q psy4818 619 ---SEFGSP--NNKTHFHN----------------LLSYSPL----HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKF 673 (734)
Q Consensus 619 ---~~~g~~--~~~~~~~~----------------~~~~sp~----~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~ 673 (734)
..|+.. ...+..+. +..++.. ..+. .+++| +|+++|++|..++...+.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~P-~lvi~G~~D~~~~~~~~~~~ 256 (294)
T PLN02824 182 ILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLP----AVKCP-VLIAWGEKDPWEPVELGRAY 256 (294)
T ss_pred HHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHh----hcCCC-eEEEEecCCCCCChHHHHHH
Confidence 001111 01111111 1111111 1122 26777 99999999999998877654
Q ss_pred HHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 674 IATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 674 ~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.+.+ ...++.+++++||....... .+....+.+||.+
T Consensus 257 ~~~~-----------~~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 293 (294)
T PLN02824 257 ANFD-----------AVEDFIVLPGVGHCPQDEAP--ELVNPLIESFVAR 293 (294)
T ss_pred HhcC-----------CccceEEeCCCCCChhhhCH--HHHHHHHHHHHhc
Confidence 3322 12467888999998765443 4566667888865
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-11 Score=119.12 Aligned_cols=214 Identities=10% Similarity=-0.039 Sum_probs=131.9
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC--ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL--PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~--~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
.+.+++..|. +.++++.|.+ .++.|+||++||..+.... ..|. .....|+++||.|+.+|+||.|........
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~---~~~~~~VlllHG~g~~~~~~~~~~~-~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~ 76 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVA---VGPRGVVIYLPPFAEEMNKSRRMVA-LQARAFAAGGFGVLQIDLYGCGDSAGDFAA 76 (266)
T ss_pred CEEecCCCCc-EEEEEecCCC---CCCceEEEEECCCcccccchhHHHH-HHHHHHHHCCCEEEEECCCCCCCCCCcccc
Confidence 3556666665 5577776654 2457899999995432221 1122 234567778999999999996543211111
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc----c---
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK----F--- 611 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----~--- 611 (734)
. ......+|+.+++++|.+.+ ..+++++|+|+||.+++.++.++|+.++++|+.+|+++...+.. +
T Consensus 77 ~----~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~ 149 (266)
T TIGR03101 77 A----RWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLV 149 (266)
T ss_pred C----CHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHH
Confidence 0 01123578888999987753 46899999999999999999999999999999999876443321 0
Q ss_pred ---ccCcc---------------cccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEec-CCCCCCCChHHHH
Q psy4818 612 ---TIAYY---------------SESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTG-DHDDRVPPLHSYK 672 (734)
Q Consensus 612 ---~~~~~---------------~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g-~~D~~v~~~~~~~ 672 (734)
..+.. ...-.|..-.++....|.+.....-+. ..+++|++.- ..+..-......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 223 (266)
T TIGR03101 150 ARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP------KNCPVHWFEVRPEEGATLSPVFSR 223 (266)
T ss_pred HHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC------CCCceEEEEeccccCCCCCHHHHH
Confidence 00000 000012222333334444333221111 1123666654 3333445567789
Q ss_pred HHHHHHhhhCCCCCCCCcEEEEEeCCC
Q psy4818 673 FIATLQEKIGSLPYQKNPLLLRVEQDA 699 (734)
Q Consensus 673 ~~~~L~~~~~~~~~~~~~~~~~~~~~~ 699 (734)
+.+++++. |..++...+++.
T Consensus 224 l~~~~~~~-------g~~v~~~~~~~~ 243 (266)
T TIGR03101 224 LGEQWVQS-------GVEVTVDLVPGP 243 (266)
T ss_pred HHHHHHHc-------CCeEeeeecCCc
Confidence 99999999 999999999988
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=128.88 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=74.3
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.||++||.+.... .|.. +...|.+ +|.|+++|+||.|..+.. ......++++.+.+..++++ .+
T Consensus 33 ~~~~iv~lHG~~~~~~--~~~~-~~~~l~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~--~~ 99 (286)
T PRK03204 33 TGPPILLCHGNPTWSF--LYRD-IIVALRD-RFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDH--LG 99 (286)
T ss_pred CCCEEEEECCCCccHH--HHHH-HHHHHhC-CcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hC
Confidence 3478999999764332 2332 3456664 899999999996543210 11124567888888887765 34
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.+++.++|||+||.++..++..+|++++++|+.++.
T Consensus 100 ~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 100 LDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CCCEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 467999999999999999999999999999876553
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-11 Score=118.15 Aligned_cols=241 Identities=16% Similarity=0.135 Sum_probs=155.2
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc--cccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN--VKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~--~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
+...+..+.||||.++|.-... + ..+++||+.+|..+..-..+ ....+.+|-|||.+++..+.+
T Consensus 268 h~~~V~yi~wSPDdryLlaCg~----~-e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d--------- 333 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLACGF----D-EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD--------- 333 (519)
T ss_pred ccCceEEEEECCCCCeEEecCc----h-HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC---------
Confidence 4466889999999999874422 1 24999999999865433222 334789999999997665532
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
..++.+++++... --++....+ -+..++.++||++++.... ...|.+++.++... +
T Consensus 334 -------r~i~~wdlDgn~~---~~W~gvr~~-~v~dlait~Dgk~vl~v~~----d~~i~l~~~e~~~d---------r 389 (519)
T KOG0293|consen 334 -------RTIIMWDLDGNIL---GNWEGVRDP-KVHDLAITYDGKYVLLVTV----DKKIRLYNREARVD---------R 389 (519)
T ss_pred -------CcEEEecCCcchh---hcccccccc-eeEEEEEcCCCcEEEEEec----ccceeeechhhhhh---------h
Confidence 2678888876421 112222222 4567899999999987652 26888898887211 2
Q ss_pred eeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-CCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 298 TVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 298 ~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
.++......... +|.||+.++ .|-. ...+..||++... .++....+. ...++.+.+-..++.++++.+++
T Consensus 390 ~lise~~~its~~iS~d~k~~L--vnL~--~qei~LWDl~e~~--lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED-- 461 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGKLAL--VNLQ--DQEIHLWDLEENK--LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED-- 461 (519)
T ss_pred ccccccCceeEEEEcCCCcEEE--EEcc--cCeeEEeecchhh--HHHHhhcccccceEEEeccCCCCcceEEecCCC--
Confidence 233333333343 777776544 3332 3569999997432 112222222 12344444333335788887777
Q ss_pred eeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 376 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+++|+|+..+|+.+..|++....+..++++|....++.+.+.. +++.++-+
T Consensus 462 ~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD---gtIRIWg~ 512 (519)
T KOG0293|consen 462 SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD---GTIRIWGP 512 (519)
T ss_pred ceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC---CeEEEecC
Confidence 6899999999999999998888888899999888777655543 35555544
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=126.52 Aligned_cols=196 Identities=15% Similarity=0.042 Sum_probs=112.5
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||..+... .|.. ....|.+ +|.|+++|+||.|.... ....+++++. +.+.+. . .
T Consensus 4 ~~~iv~~HG~~~~~~--~~~~-~~~~l~~-~~~vi~~d~~G~G~s~~---------~~~~~~~~~~---~~~~~~--~-~ 64 (245)
T TIGR01738 4 NVHLVLIHGWGMNAE--VFRC-LDEELSA-HFTLHLVDLPGHGRSRG---------FGPLSLADAA---EAIAAQ--A-P 64 (245)
T ss_pred CceEEEEcCCCCchh--hHHH-HHHhhcc-CeEEEEecCCcCccCCC---------CCCcCHHHHH---HHHHHh--C-C
Confidence 478899999644433 3433 3456664 89999999999554210 1112344444 444432 1 2
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc--cccc------------cCc-------ccc--cccCCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF--NKFT------------IAY-------YSE--SEFGSP 624 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~--~~~~------------~~~-------~~~--~~~g~~ 624 (734)
+++.++|+|+||++++.++.++|++++++|+..+...+... .... ... .+. ..++.+
T Consensus 65 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (245)
T TIGR01738 65 DPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTP 144 (245)
T ss_pred CCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999988998876554321100 0000 000 000 001111
Q ss_pred CCHHHH----------------------HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 625 NNKTHF----------------------HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 625 ~~~~~~----------------------~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
...+.. ..+...+....+.. +++| +|+++|++|..|++.....+.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vlii~g~~D~~~~~~~~~~~~~~~~---- 215 (245)
T TIGR01738 145 TARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQN----ISVP-FLRLYGYLDGLVPAKVVPYLDKLAP---- 215 (245)
T ss_pred ccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhc----CCCC-EEEEeecCCcccCHHHHHHHHHhCC----
Confidence 110000 00100111112222 6777 9999999999999887766665443
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHH
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVF 720 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 720 (734)
.+++++++++||...-... .+....+.+|
T Consensus 216 -------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~f 244 (245)
T TIGR01738 216 -------HSELYIFAKAAHAPFLSHA--EAFCALLVAF 244 (245)
T ss_pred -------CCeEEEeCCCCCCccccCH--HHHHHHHHhh
Confidence 2478889999998765433 3444445555
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=132.75 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=81.1
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHH---hcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLR---HFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~---~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
..+.+++.....|++ ....|.||++||..+... .|.......+. ++||.|+++|+||.|.... . .
T Consensus 183 ~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~---p----~ 250 (481)
T PLN03087 183 SSNESLFVHVQQPKD---NKAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPK---P----A 250 (481)
T ss_pred eCCeEEEEEEecCCC---CCCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcC---C----C
Confidence 345667776666654 133578999999865543 23322222232 3599999999999554321 1 1
Q ss_pred cCCCchhHHHHHH-HHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 544 KKQNCFDDFQAAA-EYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 544 ~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.....+++..+.+ ..+++. ...+++.++|||+||++++.++.++|++++++|+.+|.
T Consensus 251 ~~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 251 DSLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred CCcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 1224566666665 345544 23467999999999999999999999999999987753
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=123.90 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc---ccc---ccCcccc----
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF---NKF---TIAYYSE---- 618 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~---~~~---~~~~~~~---- 618 (734)
++=|..|++||.++..+++++|+|+|.|.||.+++.++.+.| .++++|+.+|-.-.... ... ..+..+.
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 466889999999999999999999999999999999999999 67999998884322211 010 0000000
Q ss_pred ccc---CCCCCHHHHHH------HHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH-HHHHHHHHHhhhCCCCCCC
Q psy4818 619 SEF---GSPNNKTHFHN------LLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH-SYKFIATLQEKIGSLPYQK 688 (734)
Q Consensus 619 ~~~---g~~~~~~~~~~------~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~-~~~~~~~L~~~~~~~~~~~ 688 (734)
..+ +.......+.. -.+.-|+++ ++.| +|+++|+.|...|-.+ +..+.++|+++ |
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~-------i~~p-iLli~g~dD~~WpS~~~a~~i~~rL~~~-------~ 146 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEK-------IKGP-ILLISGEDDQIWPSSEMAEQIEERLKAA-------G 146 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG---------SE-EEEEEETT-SSS-HHHHHHHHHHHHHCT-------T
T ss_pred ceecCCcceehhhhhhcccccccccccccHHH-------cCCC-EEEEEeCCCCccchHHHHHHHHHHHHHh-------C
Confidence 000 00000000000 011223333 5556 9999999998887665 44556678777 5
Q ss_pred Cc--EEEEEeCCCCCCCCCch--------------------------HHhHHHHHHHHHHHHHHcCC
Q psy4818 689 NP--LLLRVEQDAGHGQGTPL--------------------------MKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 689 ~~--~~~~~~~~~gH~~~~~~--------------------------~~~~~~~~~~~~fl~~~l~~ 727 (734)
.+ ++++.|+++||.+..+. ..+.+.+.++++||.++|+.
T Consensus 147 ~~~~~~~l~Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~~ 213 (213)
T PF08840_consen 147 FPHNVEHLSYPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLGQ 213 (213)
T ss_dssp -----EEEEETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCcceEEEcCCCCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44 88899999999764220 12367888999999999973
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG4178|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-11 Score=116.84 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=75.5
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
.+..|+|+++||-|.....+.+.. ..|+.+||.|+++|.|| ||.. .........+++-+...+..|++.
T Consensus 41 ~~~gP~illlHGfPe~wyswr~q~---~~la~~~~rviA~DlrG---yG~S---d~P~~~~~Yt~~~l~~di~~lld~-- 109 (322)
T KOG4178|consen 41 PGDGPIVLLLHGFPESWYSWRHQI---PGLASRGYRVIAPDLRG---YGFS---DAPPHISEYTIDELVGDIVALLDH-- 109 (322)
T ss_pred CCCCCEEEEEccCCccchhhhhhh---hhhhhcceEEEecCCCC---CCCC---CCCCCcceeeHHHHHHHHHHHHHH--
Confidence 356899999999998888776653 45677899999999999 5532 111222233444444444444433
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
+--+|+.++||++|+.++..++..+|++.++.|+..
T Consensus 110 Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~n 145 (322)
T KOG4178|consen 110 LGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLN 145 (322)
T ss_pred hccceeEEEeccchhHHHHHHHHhChhhcceEEEec
Confidence 114689999999999999999999999999888654
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=128.89 Aligned_cols=107 Identities=15% Similarity=0.046 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchh-HHHHHHHHHHHcCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFD-DFQAAAEYMINKKY 564 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~-D~~~~~~~l~~~~~ 564 (734)
+..|+||++||..+... .|... ...|.+ +|.|+++|+||.|..... . .........+ .+++.+..+++.
T Consensus 103 ~~~p~vvllHG~~~~~~--~~~~~-~~~L~~-~~~vi~~D~rG~G~S~~~---~-~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGASQG--FFFRN-FDALAS-RFRVIAIDQLGWGGSSRP---D-FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcchh--HHHHH-HHHHHh-CCEEEEECCCCCCCCCCC---C-cccccHHHHHHHHHHHHHHHHHH--
Confidence 45689999999754332 23333 355665 799999999996654311 0 0000001111 233333333332
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.+.+++.++|||+||++++.++.++|+.++++|+..|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 24568999999999999999999999999998887664
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=128.95 Aligned_cols=209 Identities=18% Similarity=0.149 Sum_probs=120.5
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||..+... .|... ...|.+ +|.|+++|+||.|... ... .....++++...+..+++. ...
T Consensus 88 gp~lvllHG~~~~~~--~w~~~-~~~L~~-~~~via~Dl~G~G~S~---~~~----~~~~~~~~~a~~l~~~l~~--l~~ 154 (360)
T PLN02679 88 GPPVLLVHGFGASIP--HWRRN-IGVLAK-NYTVYAIDLLGFGASD---KPP----GFSYTMETWAELILDFLEE--VVQ 154 (360)
T ss_pred CCeEEEECCCCCCHH--HHHHH-HHHHhc-CCEEEEECCCCCCCCC---CCC----CccccHHHHHHHHHHHHHH--hcC
Confidence 378999999765543 34433 355665 8999999999955322 110 0123455655554444443 234
Q ss_pred CcEEEEEcChHHHHHHHHHh-cCCCceeEEEEcCCcchhccc-----ccc--c---------------cCccc-------
Q psy4818 568 KYITIMGGSNGGLLVGACLN-QRPELYGAALILVGALDMLRF-----NKF--T---------------IAYYS------- 617 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~-~~p~~~~a~v~~~~~~d~~~~-----~~~--~---------------~~~~~------- 617 (734)
+++.++|+|+||++++.++. .+|++++++|+..+....... ... . ....+
T Consensus 155 ~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T PLN02679 155 KPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQR 234 (360)
T ss_pred CCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCH
Confidence 68999999999999988876 469999999877653211000 000 0 00000
Q ss_pred --c-----cccCCCC--CHHHHHH-------------HHhC-------CccCCCCCCCCCccCCcEEEEecCCCCCCCCh
Q psy4818 618 --E-----SEFGSPN--NKTHFHN-------------LLSY-------SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL 668 (734)
Q Consensus 618 --~-----~~~g~~~--~~~~~~~-------------~~~~-------sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~ 668 (734)
. ..++.+. ..+..+. +... .....+.. ++.| +||++|++|..+|+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-tLii~G~~D~~~p~~ 309 (360)
T PLN02679 235 DNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPR----ISLP-ILVLWGDQDPFTPLD 309 (360)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhh----cCCC-EEEEEeCCCCCcCch
Confidence 0 0011110 1111111 1100 00011222 6777 999999999999987
Q ss_pred HH-HHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 669 HS-YKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 669 ~~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.. .++.+.|.+. -...++++++++||....... .+..+.+.+||.+
T Consensus 310 ~~~~~~~~~l~~~-------ip~~~l~~i~~aGH~~~~E~P--e~~~~~I~~FL~~ 356 (360)
T PLN02679 310 GPVGKYFSSLPSQ-------LPNVTLYVLEGVGHCPHDDRP--DLVHEKLLPWLAQ 356 (360)
T ss_pred hhHHHHHHhhhcc-------CCceEEEEcCCCCCCccccCH--HHHHHHHHHHHHh
Confidence 43 3455555544 234688999999998765443 4666778889874
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=123.27 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=72.0
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHH-HHHHHHcCCCCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA-AEYMINKKYTKP 567 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~ 567 (734)
|+||++||..+.... |.. ....|+ +||.|+++|.||.|..... .......++++... +..+.+. .+.
T Consensus 2 ~~vv~~hG~~~~~~~--~~~-~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~ 69 (251)
T TIGR03695 2 PVLVFLHGFLGSGAD--WQA-LIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGI 69 (251)
T ss_pred CEEEEEcCCCCchhh--HHH-HHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCC
Confidence 789999997655443 333 345566 5999999999995543211 11122345555544 5555443 355
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
+++.++|||+||.+++.++.++|+.++++|+.++..
T Consensus 70 ~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 70 EPFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred CeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCC
Confidence 689999999999999999999999999999877654
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-10 Score=108.35 Aligned_cols=254 Identities=15% Similarity=0.093 Sum_probs=146.1
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
++...+-..+|||||++|| .|+...++++||+.|..++-...+.. .+..++|||||+.|+-...+.
T Consensus 113 GH~e~Vl~~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg-------- 179 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLV-----TGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG-------- 179 (480)
T ss_pred CCCCcEEEEEecCCCceEE-----ecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC--------
Confidence 3344567899999999999 56667899999999887654333222 236899999999999877543
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEe-----cCCcEEEEEEecCCCCceEEEEeCCCCCCC-ccc
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVT-----DCGRYLLVSTSNNTQGSDLHYFDLHSLPDG-KIS 291 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~~~i~~~d~~~~~~~-~l~ 291 (734)
.|.+|+..+++..-. ..+.+..++.+++|- |..++++- ....+.+.+||+..+... .+.
T Consensus 180 --------~I~lwdpktg~~~g~---~l~gH~K~It~Lawep~hl~p~~r~las----~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 180 --------SIRLWDPKTGQQIGR---ALRGHKKWITALAWEPLHLVPPCRRLAS----SSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred --------eEEEecCCCCCcccc---cccCcccceeEEeecccccCCCccceec----ccCCCCEEEEEccCceEEEEec
Confidence 688888776653222 223455677788875 57776662 223367888888763211 111
Q ss_pred CCC-Cceeeecc-ccce--------EEEEEec-CC-------------eEEEEeC-------------------------
Q psy4818 292 GKF-PLKTVIPG-MDHH--------HEIIANN-GP-------------ELIVKTT------------------------- 322 (734)
Q Consensus 292 ~~~-~~~~l~~~-~~~~--------~~~~s~d-g~-------------~l~~~s~------------------------- 322 (734)
... ++..+--+ .+.. ...|... |. .|...++
T Consensus 245 gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 111 11111111 0000 0011111 00 0000000
Q ss_pred ----------------CCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCC
Q psy4818 323 ----------------KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTG 386 (734)
Q Consensus 323 ----------------~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g 386 (734)
....++.|++|+..... ..+...+.+. ..+..+.+..+++++++++-+ ..+.+|+-.+|
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtgHq--~lVn~V~fSPd~r~IASaSFD--kSVkLW~g~tG 399 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTGHQ--ALVNHVSFSPDGRYIASASFD--KSVKLWDGRTG 399 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccc-cchhhhhchh--hheeeEEECCCccEEEEeecc--cceeeeeCCCc
Confidence 00112345555432211 0112222222 334445555556777777655 57899999999
Q ss_pred ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 387 KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 387 ~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+..+....+.|+.+.++.|. +++++.|... ++-.+|+
T Consensus 400 k~lasfRGHv~~VYqvawsaDs-RLlVS~SkDs---TLKvw~V 438 (480)
T KOG0271|consen 400 KFLASFRGHVAAVYQVAWSADS-RLLVSGSKDS---TLKVWDV 438 (480)
T ss_pred chhhhhhhccceeEEEEeccCc-cEEEEcCCCc---eEEEEEe
Confidence 9877787777788888888775 6888887765 5777887
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=123.84 Aligned_cols=198 Identities=17% Similarity=0.142 Sum_probs=127.1
Q ss_pred HHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH-cCCCCCCcEEEEEcChHHHHHHHHHhc-
Q psy4818 511 CMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN-KKYTKPKYITIMGGSNGGLLVGACLNQ- 588 (734)
Q Consensus 511 ~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~~~~~~~~~- 588 (734)
..+|. +||+|+++||-| .|..|... .......-|.+.|++.+.. .+.....+++++|+|-||..+++++..
T Consensus 20 ~~~L~-~GyaVv~pDY~G---lg~~y~~~---~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~ 92 (290)
T PF03583_consen 20 AAWLA-RGYAVVAPDYEG---LGTPYLNG---RSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELA 92 (290)
T ss_pred HHHHH-CCCEEEecCCCC---CCCcccCc---HhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHh
Confidence 45554 699999999998 34333221 1122345566666666654 244445799999999999999998754
Q ss_pred ---CCCc---eeEEEEcCCcchhccccccccCccc---------------------ccccCCCC----------------
Q psy4818 589 ---RPEL---YGAALILVGALDMLRFNKFTIAYYS---------------------ESEFGSPN---------------- 625 (734)
Q Consensus 589 ---~p~~---~~a~v~~~~~~d~~~~~~~~~~~~~---------------------~~~~g~~~---------------- 625 (734)
.||+ +.++++..|..|+..+.....+..+ ..++..+.
T Consensus 93 ~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~ 172 (290)
T PF03583_consen 93 PSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADI 172 (290)
T ss_pred HHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHH
Confidence 4776 6899999998887655422111100 00000000
Q ss_pred -------------------------CHHHHHHHHhCCc-cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q psy4818 626 -------------------------NKTHFHNLLSYSP-LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679 (734)
Q Consensus 626 -------------------------~~~~~~~~~~~sp-~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~ 679 (734)
++.....+.+.+. +..-.. -+.| ++|.||..|..||+....++++++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----P~~P-v~i~~g~~D~vvP~~~~~~l~~~~c~ 247 (290)
T PF03583_consen 173 VAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWT----PTVP-VLIYQGTADEVVPPADTDALVAKWCA 247 (290)
T ss_pred HHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCC----CCCC-EEEEecCCCCCCChHHHHHHHHHHHH
Confidence 0001111222111 000011 2455 99999999999999999999999999
Q ss_pred hhCCCCCCC-CcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCCCC
Q psy4818 680 KIGSLPYQK-NPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPD 732 (734)
Q Consensus 680 ~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~ 732 (734)
. | .+++++.++..+|.... .......++||...|....+++
T Consensus 248 ~-------G~a~V~~~~~~~~~H~~~~-----~~~~~~a~~Wl~~rf~G~~~~~ 289 (290)
T PF03583_consen 248 A-------GGADVEYVRYPGGGHLGAA-----FASAPDALAWLDDRFAGKPATS 289 (290)
T ss_pred c-------CCCCEEEEecCCCChhhhh-----hcCcHHHHHHHHHHHCCCCCCC
Confidence 9 8 89999999999997542 2233457899999998877654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=128.90 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=69.3
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHH-------HhcCeEEEEEecccCCCCCchhhhccc-cccCCCchhHHHHHH-HH
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFL-------RHFNGIYAIPNIRGGGELGEDWHNAGR-LLKKQNCFDDFQAAA-EY 558 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l-------~~~G~~v~~~~~rG~~~~g~~~~~~~~-~~~~~~~~~D~~~~~-~~ 558 (734)
.|.||++||+.++...+. ...+...| ..++|.|+++|+||.|..... .... .......++++...+ ..
T Consensus 69 gpplvllHG~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p--~~~~~~~~~~~~~~~~a~~~~~~ 145 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFL-SPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKP--SDGLRAAFPRYDYDDMVEAQYRL 145 (360)
T ss_pred CCeEEEeCCCCCchhhhc-cchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCC--CcCCCCCCCcccHHHHHHHHHHH
Confidence 578999999876543321 11222222 135899999999996643210 0000 001124567776543 33
Q ss_pred HHHcCCCCCCcEE-EEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 559 MINKKYTKPKYIT-IMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 559 l~~~~~~d~~ri~-i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
+.++ .+-+++. |+|+|+||++++.++.++|++++++|+.++.
T Consensus 146 l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 146 VTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred HHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 4443 2334664 8999999999999999999999999977653
|
|
| >KOG4667|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=109.87 Aligned_cols=197 Identities=16% Similarity=0.119 Sum_probs=134.7
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..-++|+.||. .+.-...+....+..+++.|+.++.+|++|-|+....|+-. ......+|+..+++++.....
T Consensus 31 gs~e~vvlcHGf-rS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~G----n~~~eadDL~sV~q~~s~~nr- 104 (269)
T KOG4667|consen 31 GSTEIVVLCHGF-RSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYG----NYNTEADDLHSVIQYFSNSNR- 104 (269)
T ss_pred CCceEEEEeecc-ccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccC----cccchHHHHHHHHHHhccCce-
Confidence 566789999985 34434445556788899999999999999988766555542 333456999999999965322
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcc---cccccCCC------------CCHHHH
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYY---SESEFGSP------------NNKTHF 630 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~---~~~~~g~~------------~~~~~~ 630 (734)
---+|.|||-||..++..+...++ ..-+|..+|-.|.........++. |..+-|.. ..++-.
T Consensus 105 --~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSl 181 (269)
T KOG4667|consen 105 --VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESL 181 (269)
T ss_pred --EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHH
Confidence 123789999999999999998887 467788888777665543333322 22221211 111111
Q ss_pred -HHHHhC-Cc-cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCch
Q psy4818 631 -HNLLSY-SP-LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL 707 (734)
Q Consensus 631 -~~~~~~-sp-~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (734)
+.|..- ++ ...|+ +.+| +|-+||..|..||.+++.+|++.+..+ .|.+.+|+.|.+....
T Consensus 182 mdrLntd~h~aclkId-----~~C~-VLTvhGs~D~IVPve~AkefAk~i~nH-----------~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 182 MDRLNTDIHEACLKID-----KQCR-VLTVHGSEDEIVPVEDAKEFAKIIPNH-----------KLEIIEGADHNYTGHQ 244 (269)
T ss_pred HHHHhchhhhhhcCcC-----ccCc-eEEEeccCCceeechhHHHHHHhccCC-----------ceEEecCCCcCccchh
Confidence 111110 01 01232 6787 999999999999999999999888654 6888899999998654
Q ss_pred H
Q psy4818 708 M 708 (734)
Q Consensus 708 ~ 708 (734)
.
T Consensus 245 ~ 245 (269)
T KOG4667|consen 245 S 245 (269)
T ss_pred h
Confidence 4
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=128.71 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=79.3
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCcc--ccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCch
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPT--FSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 549 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~--~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~ 549 (734)
+..+.|.|.. ....+.| ||++||-........ -...+..+|+++||.|+++|+||.+..... ........
T Consensus 48 ~~l~~~~~~~-~~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~------~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVK-DNTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY------LTLDDYIN 119 (350)
T ss_pred EEEEEecCCC-CcCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc------CCHHHHHH
Confidence 4455555542 1122345 777787422211110 012356677778999999999985431110 00011112
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhc
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML 606 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~ 606 (734)
+|+.++++++.++. ..+++.++|||+||.+++.++..+|+.++++|+.++.+++.
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 35677888887763 44689999999999999999999999999999988877653
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=131.53 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=75.8
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..|+||++||..+.... |.. ....|.+ +|.|+++|+||.|.... ......++++.+.+..+++. .
T Consensus 129 ~~~~~vl~~HG~~~~~~~--~~~-~~~~l~~-~~~v~~~d~~g~G~s~~--------~~~~~~~~~~~~~~~~~~~~--~ 194 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLNN--WLF-NHAALAA-GRPVIALDLPGHGASSK--------AVGAGSLDELAAAVLAFLDA--L 194 (371)
T ss_pred CCCCeEEEECCCCCccch--HHH-HHHHHhc-CCEEEEEcCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHh--c
Confidence 346789999986554433 222 2345664 79999999999665431 12234577777777776654 5
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
++.++.++|||+||++++.++.++|+.++++|+.+|.
T Consensus 195 ~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 195 GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 6678999999999999999999999999999988765
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=127.19 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=80.8
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc---------cccHHH--HHHHHhcCeEEEEEeccc--CCCCCc
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP---------TFSISR--CMFLRHFNGIYAIPNIRG--GGELGE 534 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~---------~~~~~~--~~~l~~~G~~v~~~~~rG--~~~~g~ 534 (734)
+|.+|....+-+.+ ....|.||++||-.++.... .|.... ...|...+|.|+++|+|| +|..+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 34455444443321 12357899999976644211 122211 112334699999999999 443332
Q ss_pred -hhhhcccc---ccCCCchhHHHHHHHHHHHcCCCCCCc-EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 535 -DWHNAGRL---LKKQNCFDDFQAAAEYMINKKYTKPKY-ITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 535 -~~~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
++...+.. ......++|+.+.+..++++- ..++ +.++|+|+||.+++.++.++|++++++|+.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 161 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATS 161 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccC
Confidence 22222110 112356788887777666652 3356 999999999999999999999999988887664
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=127.55 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=64.8
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchh----HHHHHHHHHHHcCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFD----DFQAAAEYMINKKY 564 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~----D~~~~~~~l~~~~~ 564 (734)
|.||++||..+.... |.. ....|++ +|.|+++|+||.|...... ...+.+ |+.+.++.+.
T Consensus 87 ~~vvliHG~~~~~~~--w~~-~~~~l~~-~~~v~~~D~~G~G~S~~~~--------~~~~~~~~a~~l~~~i~~~~---- 150 (354)
T PLN02578 87 LPIVLIHGFGASAFH--WRY-NIPELAK-KYKVYALDLLGFGWSDKAL--------IEYDAMVWRDQVADFVKEVV---- 150 (354)
T ss_pred CeEEEECCCCCCHHH--HHH-HHHHHhc-CCEEEEECCCCCCCCCCcc--------cccCHHHHHHHHHHHHHHhc----
Confidence 568899997554332 332 2355664 8999999999966543221 112333 3333333332
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.+++.++|||+||+++..++.++|++++++|+.++
T Consensus 151 --~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 151 --KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred --cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 35799999999999999999999999999987654
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=121.46 Aligned_cols=204 Identities=16% Similarity=0.177 Sum_probs=125.5
Q ss_pred EEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcC----eEEEEEecccCCCCC
Q psy4818 459 TKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN----GIYAIPNIRGGGELG 533 (734)
Q Consensus 459 ~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~rG~~~~g 533 (734)
.+.+++.|. -|.+..+++|.|+++. .+++|+|+++||.........+ ..+..|.+.| .+|+.+|.-.+....
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~~~--~~ld~li~~g~i~P~ivV~id~~~~~~R~ 256 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMPVW--PALDSLTHRGQLPPAVYLLIDAIDTTHRS 256 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCCHH--HHHHHHHHcCCCCceEEEEECCCCccccc
Confidence 455556553 4667889999999875 5689999999997644332221 2233333457 346777753211111
Q ss_pred chhhhccccccCCCchhHHH--HHHHHHHHcC--CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQ--AAAEYMINKK--YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 609 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~--~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 609 (734)
.. ......+.+++ ..+-++.++. ..|+++.+|+|.|+||+.++.++.++|++|.++++.+|-+-+..
T Consensus 257 ~e-------l~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~-- 327 (411)
T PRK10439 257 QE-------LPCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPH-- 327 (411)
T ss_pred cc-------CCchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCC--
Confidence 00 01112333332 2334444432 35889999999999999999999999999999999998541110
Q ss_pred ccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCC
Q psy4818 610 KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN 689 (734)
Q Consensus 610 ~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~ 689 (734)
..+. ......+.+.+.. ... ... .++|.+|..|... +....++++.|+++ |.
T Consensus 328 ----------~~~~-~~~~l~~~l~~~~----~~~----~~l-r~~i~~G~~E~~~-~~~~~~l~~~L~~~-------G~ 379 (411)
T PRK10439 328 ----------RGGQ-QEGVLLEQLKAGE----VSA----RGL-RIVLEAGRREPMI-MRANQALYAQLHPA-------GH 379 (411)
T ss_pred ----------ccCC-chhHHHHHHHhcc----cCC----CCc-eEEEeCCCCCchH-HHHHHHHHHHHHHC-------CC
Confidence 0010 0111122222210 000 111 2899999988543 56789999999998 99
Q ss_pred cEEEEEeCCCCCCC
Q psy4818 690 PLLLRVEQDAGHGQ 703 (734)
Q Consensus 690 ~~~~~~~~~~gH~~ 703 (734)
++.+.+++| ||..
T Consensus 380 ~~~~~~~~G-GHd~ 392 (411)
T PRK10439 380 SVFWRQVDG-GHDA 392 (411)
T ss_pred cEEEEECCC-CcCH
Confidence 999999987 7965
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-12 Score=126.97 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=73.6
Q ss_pred EEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcE
Q psy4818 491 IIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYI 570 (734)
Q Consensus 491 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 570 (734)
||++||..+.. ..|.. +...|+ +||.|+++|+||.|... ... ......+++....+..++++ +..+++
T Consensus 1 vv~~hG~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~---~~~---~~~~~~~~~~~~~l~~~l~~--~~~~~~ 68 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDP-LAEALA-RGYRVIAFDLPGHGRSD---PPP---DYSPYSIEDYAEDLAELLDA--LGIKKV 68 (228)
T ss_dssp EEEE-STTTTG--GGGHH-HHHHHH-TTSEEEEEECTTSTTSS---SHS---SGSGGSHHHHHHHHHHHHHH--TTTSSE
T ss_pred eEEECCCCCCH--HHHHH-HHHHHh-CCCEEEEEecCCccccc---ccc---ccCCcchhhhhhhhhhcccc--cccccc
Confidence 78999986665 34444 456666 69999999999955432 111 12234556666665555554 223689
Q ss_pred EEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchh
Q psy4818 571 TIMGGSNGGLLVGACLNQRPELYGAALILVGALDM 605 (734)
Q Consensus 571 ~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~ 605 (734)
.++|||+||.+++.++.++|+.++++|+..|....
T Consensus 69 ~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~ 103 (228)
T PF12697_consen 69 ILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPL 103 (228)
T ss_dssp EEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSH
T ss_pred cccccccccccccccccccccccccceeecccccc
Confidence 99999999999999999999999999999887753
|
... |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=128.44 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=64.9
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc---cccCCCch-hHHHHHHHHHHHc
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR---LLKKQNCF-DDFQAAAEYMINK 562 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~---~~~~~~~~-~D~~~~~~~l~~~ 562 (734)
+.|+||+.||+.+....+.+.......|...+|.|+++|+||.|........... .......+ +|+.+....|.+.
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK 119 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH
Confidence 4567777666544333222110000245445899999999996643311110000 00001112 4444434445443
Q ss_pred CCCCCCcE-EEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 563 KYTKPKYI-TIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 563 ~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
...+++ .|+|+|+||++++.++.++|++++++|+.++
T Consensus 120 --lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 120 --FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred --hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 233574 7899999999999999999999999887754
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=121.32 Aligned_cols=196 Identities=15% Similarity=0.064 Sum_probs=113.0
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||..+... .|.. ....|.+ .|.|+++|+||.|... . .....++++. +.+.+. ..
T Consensus 13 ~~~ivllHG~~~~~~--~w~~-~~~~L~~-~~~vi~~Dl~G~G~S~------~---~~~~~~~~~~---~~l~~~---~~ 73 (256)
T PRK10349 13 NVHLVLLHGWGLNAE--VWRC-IDEELSS-HFTLHLVDLPGFGRSR------G---FGALSLADMA---EAVLQQ---AP 73 (256)
T ss_pred CCeEEEECCCCCChh--HHHH-HHHHHhc-CCEEEEecCCCCCCCC------C---CCCCCHHHHH---HHHHhc---CC
Confidence 356999999654443 3444 4456665 7999999999965321 0 1123344443 344433 24
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc-c------------cCc-------cccc--ccCCCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF-T------------IAY-------YSES--EFGSPN 625 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~------------~~~-------~~~~--~~g~~~ 625 (734)
+++.++|||+||+++..++.++|++++.+|+..+..-....... . ... .+.. .++.+.
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTET 153 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCch
Confidence 68999999999999999999999999999876553211000000 0 000 0000 001110
Q ss_pred CHHHH----------------------HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q psy4818 626 NKTHF----------------------HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683 (734)
Q Consensus 626 ~~~~~----------------------~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~ 683 (734)
..... ..+...+....+.. +++| +||++|++|..+|...+..+.+.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~~~~~~~~~~~~i~~---- 224 (256)
T PRK10349 154 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQN----VSMP-FLRLYGYLDGLVPRKVVPMLDKLWPH---- 224 (256)
T ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhh----cCCC-eEEEecCCCccCCHHHHHHHHHhCCC----
Confidence 00000 01111111122222 6777 99999999999988776555554443
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHH
Q psy4818 684 LPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVF 720 (734)
Q Consensus 684 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 720 (734)
.++.+++++||...-... .+....+.+|
T Consensus 225 -------~~~~~i~~~gH~~~~e~p--~~f~~~l~~~ 252 (256)
T PRK10349 225 -------SESYIFAKAAHAPFISHP--AEFCHLLVAL 252 (256)
T ss_pred -------CeEEEeCCCCCCccccCH--HHHHHHHHHH
Confidence 378889999998765543 2444445554
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=127.58 Aligned_cols=221 Identities=14% Similarity=0.098 Sum_probs=129.7
Q ss_pred CCcEEEEecCCCCCcCCcc-----------ccHHH---HHHHHhcCeEEEEEecccCC--CCCchhhhc--ccc---ccC
Q psy4818 487 RNPVIIYGYGGYGVSVLPT-----------FSISR---CMFLRHFNGIYAIPNIRGGG--ELGEDWHNA--GRL---LKK 545 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~-----------~~~~~---~~~l~~~G~~v~~~~~rG~~--~~g~~~~~~--~~~---~~~ 545 (734)
..|.||++||..+...... |...+ ..++. .+|.|+++|++|++ ..+...... +.. ...
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~ 125 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-DRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFP 125 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-cceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCC
Confidence 3689999999876654211 22211 12334 59999999999832 222111100 000 111
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCc-EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc----c-----cccccCc
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKY-ITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR----F-----NKFTIAY 615 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~----~-----~~~~~~~ 615 (734)
..+++|+.+.+..+++.- ..++ ..++|+|+||.+++.++.++|++++++|+.++...... + .......
T Consensus 126 ~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~ 203 (379)
T PRK00175 126 VITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADP 203 (379)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCC
Confidence 456788888777777652 3356 48999999999999999999999999988765331100 0 0000000
Q ss_pred cc---------------------------c------cccCC----C---------CCHHHH------HHHHhCCcc----
Q psy4818 616 YS---------------------------E------SEFGS----P---------NNKTHF------HNLLSYSPL---- 639 (734)
Q Consensus 616 ~~---------------------------~------~~~g~----~---------~~~~~~------~~~~~~sp~---- 639 (734)
.| . ..++. + ...+.+ ......++-
T Consensus 204 ~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~ 283 (379)
T PRK00175 204 DWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLY 283 (379)
T ss_pred CCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHH
Confidence 00 0 00100 0 000000 001111110
Q ss_pred -------------------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC-CC
Q psy4818 640 -------------------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ-DA 699 (734)
Q Consensus 640 -------------------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~ 699 (734)
..+. .+++| +|+++|++|..+|+..+.++.+.+... ++.+.+.+++ ++
T Consensus 284 ~~~~~~~~d~~~~~~~d~~~~l~----~I~~P-tLvI~G~~D~~~p~~~~~~la~~i~~a-------~~~~~l~~i~~~~ 351 (379)
T PRK00175 284 LTRALDYFDPARGRGGDLAAALA----RIKAR-FLVVSFTSDWLFPPARSREIVDALLAA-------GADVSYAEIDSPY 351 (379)
T ss_pred HHHHHHhccccCCCCCCHHHHHh----cCCCC-EEEEEECCccccCHHHHHHHHHHHHhc-------CCCeEEEEeCCCC
Confidence 0012 26777 999999999999999999999999876 6666777775 99
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 700 GHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
||...-... .+..+.+.+||.+.
T Consensus 352 GH~~~le~p--~~~~~~L~~FL~~~ 374 (379)
T PRK00175 352 GHDAFLLDD--PRYGRLVRAFLERA 374 (379)
T ss_pred CchhHhcCH--HHHHHHHHHHHHhh
Confidence 998764433 24566678888764
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-10 Score=103.62 Aligned_cols=232 Identities=13% Similarity=0.158 Sum_probs=140.1
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
++...+.....|+||++.. +. +....+++||+++|+..+.-.+.. ..-++++|||.+.|.-.+.|.
T Consensus 61 GHsH~v~dv~~s~dg~~al-S~----swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk-------- 127 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFAL-SA----SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK-------- 127 (315)
T ss_pred ccceEecceEEccCCceEE-ec----cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc--------
Confidence 3456688999999999644 33 334689999999998654333333 446899999999998765433
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|.+|+.-+.. ...+.+. .+..|+..+.|||...-.++.+. +....+.+||+.+. ...
T Consensus 128 --------Tiklwnt~g~c--k~t~~~~-~~~~WVscvrfsP~~~~p~Ivs~--s~DktvKvWnl~~~---------~l~ 185 (315)
T KOG0279|consen 128 --------TIKLWNTLGVC--KYTIHED-SHREWVSCVRFSPNESNPIIVSA--SWDKTVKVWNLRNC---------QLR 185 (315)
T ss_pred --------eeeeeeecccE--EEEEecC-CCcCcEEEEEEcCCCCCcEEEEc--cCCceEEEEccCCc---------chh
Confidence 56777654432 1112222 22568899999999643333332 23368999999882 112
Q ss_pred eeeccccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 298 TVIPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 298 ~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
....+...... .+||||..+.. ++...+++++|++.++ .+..-+....+....+..+...+.....
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcas----Ggkdg~~~LwdL~~~k-----~lysl~a~~~v~sl~fspnrywL~~at~--- 253 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCAS----GGKDGEAMLWDLNEGK-----NLYSLEAFDIVNSLCFSPNRYWLCAATA--- 253 (315)
T ss_pred hccccccccEEEEEECCCCCEEec----CCCCceEEEEEccCCc-----eeEeccCCCeEeeEEecCCceeEeeccC---
Confidence 11112222222 39999986663 5567889999998765 1222222456666666663443333322
Q ss_pred eeEEEEECCCCceeeeeCCC-Cce--------EEeeccCcccceEEEEEec
Q psy4818 376 SVMDLHDLNTGKRLHSFPLD-LGQ--------ITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~-~g~--------v~~~~~~~d~~~l~~~~ss 417 (734)
+.|.+||++++..+..+... .|. ..++.++.||..++--+++
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 34999999887765555432 111 1245566667666655543
|
|
| >KOG1838|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-10 Score=115.91 Aligned_cols=242 Identities=15% Similarity=0.100 Sum_probs=152.6
Q ss_pred eEEEEEEEcCCCcEEeEEEEEecccc---CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGAL---RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
.-++.-++..||..+..-++.+.+-. ..+..|+||++||-.+++.. .|-..+...+.++||.+++.|.||-++--
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~-~YVr~lv~~a~~~G~r~VVfN~RG~~g~~- 169 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHE-SYVRHLVHEAQRKGYRVVVFNHRGLGGSK- 169 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChh-HHHHHHHHHHHhCCcEEEEECCCCCCCCc-
Confidence 34555566778888888888665531 13578999999998777766 44444555667789999999999933221
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCC---CceeEEEEcCCcchh--cccc
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP---ELYGAALILVGALDM--LRFN 609 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~~~a~v~~~~~~d~--~~~~ 609 (734)
-.. ....-...-+|+..+++++.++. - ..++.++|.|+||.+....+.+.- .+.+|+++..|+--+ .+..
T Consensus 170 -LtT--pr~f~ag~t~Dl~~~v~~i~~~~-P-~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~ 244 (409)
T KOG1838|consen 170 -LTT--PRLFTAGWTEDLREVVNHIKKRY-P-QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSI 244 (409)
T ss_pred -cCC--CceeecCCHHHHHHHHHHHHHhC-C-CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHH
Confidence 000 11122234689999999998762 2 237999999999999999987643 366777777775311 0000
Q ss_pred ------------------------cc---ccCccc-----------------ccccCCCCCHHHHHHHHhCCccCCCCCC
Q psy4818 610 ------------------------KF---TIAYYS-----------------ESEFGSPNNKTHFHNLLSYSPLHNIKVP 645 (734)
Q Consensus 610 ------------------------~~---~~~~~~-----------------~~~~g~~~~~~~~~~~~~~sp~~~~~~p 645 (734)
.. .....| ...||.+. .-+++++.|+...++.
T Consensus 245 ~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~~- 320 (409)
T KOG1838|consen 245 ETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVDK- 320 (409)
T ss_pred hcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhccc-
Confidence 00 000000 01223333 2356788899999987
Q ss_pred CCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC-CCc--hHHhHHHHHH-HHHHH
Q psy4818 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ-GTP--LMKSIEEMTD-IYVFL 721 (734)
Q Consensus 646 ~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~-~~~--~~~~~~~~~~-~~~fl 721 (734)
++.| +|++++.+|+.||.. +.-.-.. .. ++.+.+.+-.-+||-. ... .+. .-++.+ +.+|+
T Consensus 321 ---I~VP-~L~ina~DDPv~p~~-~ip~~~~--~~-------np~v~l~~T~~GGHlgfleg~~p~~-~~w~~~~l~ef~ 385 (409)
T KOG1838|consen 321 ---IKVP-LLCINAADDPVVPEE-AIPIDDI--KS-------NPNVLLVITSHGGHLGFLEGLWPSA-RTWMDKLLVEFL 385 (409)
T ss_pred ---cccc-EEEEecCCCCCCCcc-cCCHHHH--hc-------CCcEEEEEeCCCceeeeeccCCCcc-chhHHHHHHHHH
Confidence 8999 999999999999874 2211111 12 4567888888899943 211 121 233444 67777
Q ss_pred HHHc
Q psy4818 722 MKSL 725 (734)
Q Consensus 722 ~~~l 725 (734)
.+..
T Consensus 386 ~~~~ 389 (409)
T KOG1838|consen 386 GNAI 389 (409)
T ss_pred HHHH
Confidence 7654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-08 Score=104.05 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=138.1
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+..+.|||||+.++.+.... ..|+++|+.+++.+...........+.|+|||+.++.+...
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--------------- 93 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS----DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED--------------- 93 (300)
T ss_pred CCceEECCCCCEEEEEECCC----CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC---------------
Confidence 35689999999876554322 46999999998764322222223578999999977665421
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
...|+++++.+.. .+..+.... ...++.|+|||+++++.... .+.++.+|..++. ....+..+.
T Consensus 94 ~~~l~~~d~~~~~--~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~---~~~~~~~d~~~~~--------~~~~~~~~~ 157 (300)
T TIGR03866 94 DNLVTVIDIETRK--VLAEIPVGV---EPEGMAVSPDGKIVVNTSET---TNMAHFIDTKTYE--------IVDNVLVDQ 157 (300)
T ss_pred CCeEEEEECCCCe--EEeEeeCCC---CcceEEECCCCCEEEEEecC---CCeEEEEeCCCCe--------EEEEEEcCC
Confidence 1268888887642 122222111 22468999999998875432 2456777877621 111111111
Q ss_pred cceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC-----CceeEEEEE-eeCCEEEEEEEeCCcee
Q psy4818 304 DHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE-----NRTLDVVAA-VANNKLIVHYIQNVRSV 377 (734)
Q Consensus 304 ~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~~~-~~~~~l~~~~~~~~~~~ 377 (734)
......|++||+.+++.+.. ...|+.+|+++++. ...+..... ......+.+ .+++.+++.... ...
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--~~~ 230 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEI---GGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--ANR 230 (300)
T ss_pred CccEEEECCCCCEEEEEcCC---CCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCC--CCe
Confidence 22223489999988775443 24689999987541 122211110 111112323 343444444322 246
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+||+.+++..+.+... ..+..++++++++.++.... .-..+.++|+
T Consensus 231 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~ 278 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLLVG-QRVWQLAFTPDEKYLLTTNG---VSNDVSVIDV 278 (300)
T ss_pred EEEEECCCCcEEEEEEeC-CCcceEEECCCCCEEEEEcC---CCCeEEEEEC
Confidence 999999888765544322 23556778899887765422 1236999999
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-08 Score=102.61 Aligned_cols=258 Identities=12% Similarity=0.089 Sum_probs=149.8
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC-cccccc--cccccCeeEEEcCCcEEEEEEEecCC-CC--
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK-DYPEVL--KNVKFPSISWTHDHKGFFYNQYCDIN-GT-- 213 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~-~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~-~~-- 213 (734)
+...+.-..+||.|-||| +|+....+++||....+ .+..+. -...+..++|+.||++|+.+..-... +.
T Consensus 58 H~~~vtVAkySPsG~yiA-----SGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F 132 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIA-----SGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF 132 (603)
T ss_pred ccceeEEEEeCCCceEEe-----ecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence 346677899999999988 45555679999976533 333221 11134689999999999987642210 00
Q ss_pred --CCC----Ccc--------cccCCcEEEEEECCCCCCCCeeEEecC---------CCCeeEEEEEEecCCcEEEEEEec
Q psy4818 214 --ADG----TET--------TAHMGQKIYYHVLGTEQDKDIPVVEFP---------NGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 214 --~~~----~~~--------~~~~~~~l~~~~l~t~~~~~~~v~~~~---------~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
+.| ..+ ..-++.+=+|.--++. ..-+.+|+.| ++..|+..+.+||||+..+-...
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sd-Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs- 210 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSD-DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS- 210 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccC-CCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC-
Confidence 000 000 0001111122111111 1123345543 23456778999999998774332
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeee---ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEe
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVI---PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 346 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~---~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 346 (734)
...++++|-.+|+. +-.+- .+....+.. |+||+++++-.+.. ..+-.||+.+.+. .+++
T Consensus 211 ---Dgki~iyDGktge~--------vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD----kt~KIWdVs~~sl--v~t~ 273 (603)
T KOG0318|consen 211 ---DGKIYIYDGKTGEK--------VGELEDSDAHKGSIFALSWSPDSTQFLTVSAD----KTIKIWDVSTNSL--VSTW 273 (603)
T ss_pred ---CccEEEEcCCCccE--------EEEecCCCCccccEEEEEECCCCceEEEecCC----ceEEEEEeeccce--EEEe
Confidence 26899999887432 11121 122334444 99999998865543 3466778776541 2333
Q ss_pred ecCCC-CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEE
Q psy4818 347 IPEDE-NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIY 425 (734)
Q Consensus 347 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~ 425 (734)
.-+.. ....-++.|.+ ++|+..... ..|-.+++.+++.++.+..+.-.|..++.++|++ .+|+.+-. +.+-
T Consensus 274 ~~~~~v~dqqvG~lWqk-d~lItVSl~---G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyD---G~I~ 345 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQK-DHLITVSLS---GTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYD---GHIN 345 (603)
T ss_pred ecCCchhceEEEEEEeC-CeEEEEEcC---cEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccC---ceEE
Confidence 33321 23334556665 676655433 3577788878887777877777788899999884 44454433 4677
Q ss_pred EEeC
Q psy4818 426 HCNI 429 (734)
Q Consensus 426 ~~d~ 429 (734)
.||.
T Consensus 346 ~W~~ 349 (603)
T KOG0318|consen 346 SWDS 349 (603)
T ss_pred EEec
Confidence 7887
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.2e-10 Score=113.70 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=75.0
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
++..|.||++||..+... .|.. ....|.++||.|+++|+||.|... .. ......+++....+..++++..
T Consensus 15 ~~~~p~vvliHG~~~~~~--~w~~-~~~~L~~~g~~vi~~dl~g~G~s~---~~----~~~~~~~~~~~~~l~~~i~~l~ 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGGSW--CWYK-IRCLMENSGYKVTCIDLKSAGIDQ---SD----ADSVTTFDEYNKPLIDFLSSLP 84 (273)
T ss_pred cCCCCeEEEECCCCCCcC--cHHH-HHHHHHhCCCEEEEecccCCCCCC---CC----cccCCCHHHHHHHHHHHHHhcC
Confidence 456789999999765443 4443 345676679999999999965321 00 1112456666665555544421
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
..+++.++||||||+++..++.++|++++++|..++.
T Consensus 85 -~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 -ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred -CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2368999999999999999999999999999887664
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-12 Score=125.73 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=91.1
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcC----eEEEEEecccCCCCCchhhhc-----
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN----GIYAIPNIRGGGELGEDWHNA----- 539 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~rG~~~~g~~~~~~----- 539 (734)
|..+.++|+.|+++...+++|+|++.||................++.+ | .++++++.-+.......|...
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~~-~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFRNGNAQEALDRLIAE-GKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHHHHHHHHHHHHHHHH-HTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccccchHHHHHHHHHHh-CCCCceEEEEEeccccccccccccccccccc
Confidence 667899999999987789999999999951111100111112223333 4 556666655444233344422
Q ss_pred -cccccCCCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhc
Q psy4818 540 -GRLLKKQNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML 606 (734)
Q Consensus 540 -~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~ 606 (734)
.....+...+++++ ..+.++.++..+++++.+|+|+|+||+.++.++.++|++|.++++.+|.++..
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 11112223455654 35777777766777779999999999999999999999999999999987654
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-08 Score=100.73 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=70.8
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC--CCCceEEEE
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK--SGSDWNTLH 171 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~--~g~~~~~l~ 171 (734)
-.|-..|+.+.|+..+. ||..+...|+.+.|+.- ...+..+.+||||+++||+.-- ++-...+||
T Consensus 44 l~PDI~GD~IiFt~~Dd------lWe~slk~g~~~ritS~-------lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly 110 (668)
T COG4946 44 LNPDIYGDRIIFTCCDD------LWEYSLKDGKPLRITSG-------LGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLY 110 (668)
T ss_pred cCCcccCcEEEEEechH------HHHhhhccCCeeEEecc-------cceeccccCCCCCcEEEEEEEEecCCCccccEE
Confidence 44557789999988765 56555556666666541 1235679999999999995432 222345899
Q ss_pred EEECCCCCcccccccccccC-eeEEEcCCcEEEEEEE
Q psy4818 172 IKDVDTGKDYPEVLKNVKFP-SISWTHDHKGFFYNQY 207 (734)
Q Consensus 172 v~dl~~g~~~~~~~~~~~~~-~~~wSpDg~~l~y~~~ 207 (734)
+++.++|+....+-.+..+. -..|+|||+-|+++..
T Consensus 111 ~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~ 147 (668)
T COG4946 111 VVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDF 147 (668)
T ss_pred EEeCCCCcEEEEEEeccccceeeccCCCCCEEEEecc
Confidence 99999999877665555443 4579999998887754
|
|
| >KOG3101|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-11 Score=107.40 Aligned_cols=211 Identities=15% Similarity=0.148 Sum_probs=127.1
Q ss_pred cEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec--ccCC----------CCCchhh
Q psy4818 470 TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI--RGGG----------ELGEDWH 537 (734)
Q Consensus 470 ~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--rG~~----------~~g~~~~ 537 (734)
..+..-+|.|+....+++.|+|.|+-|-........-...+++...+.|.+|+.||- ||-. |.|..|+
T Consensus 26 c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFY 105 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFY 105 (283)
T ss_pred cceEEEEecCCCcccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeE
Confidence 457778888988766777999999988533322111112245666788999999985 5521 1122233
Q ss_pred hccccc-cCC--CchhHHHHHHHHHHHc--CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc
Q psy4818 538 NAGRLL-KKQ--NCFDDFQAAAEYMINK--KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612 (734)
Q Consensus 538 ~~~~~~-~~~--~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 612 (734)
-....+ |.. ..++=+..-+-.++.. --+|+.+++|.||||||+-++.+..++|.+|+.+.+.+|+.+...-..
T Consensus 106 vnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~cpW-- 183 (283)
T KOG3101|consen 106 VNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINCPW-- 183 (283)
T ss_pred EecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccCcc--
Confidence 222211 111 1122222222222222 237999999999999999999999999999999999999998764310
Q ss_pred cCc-ccccccCCCCCHHHHHHHHhCCc------cCCCCCCCCCccCCcEEEEecCCCCCCCChH--HHHHHHHHHhhhCC
Q psy4818 613 IAY-YSESEFGSPNNKTHFHNLLSYSP------LHNIKVPPNNTQYPATLVLTGDHDDRVPPLH--SYKFIATLQEKIGS 683 (734)
Q Consensus 613 ~~~-~~~~~~g~~~~~~~~~~~~~~sp------~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~--~~~~~~~L~~~~~~ 683 (734)
+. ++....|. ++..+ ..|++ |.++.. - +||-+|..|...+ .| +..+.++.+..
T Consensus 184 -GqKAf~gYLG~--~ka~W---~~yDat~lik~y~~~~~-------~-ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~--- 245 (283)
T KOG3101|consen 184 -GQKAFTGYLGD--NKAQW---EAYDATHLIKNYRGVGD-------D-ILIDQGAADNFLA-EQLLPENLLEACKAT--- 245 (283)
T ss_pred -hHHHhhcccCC--ChHHH---hhcchHHHHHhcCCCCc-------c-EEEecCccchhhh-hhcChHHHHHHhhcc---
Confidence 11 11112243 33322 23333 333333 1 9999999998665 33 34444444322
Q ss_pred CCCCCCcEEEEEeCCCCCCC
Q psy4818 684 LPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 684 ~~~~~~~~~~~~~~~~gH~~ 703 (734)
...++.++.-++-.|..
T Consensus 246 ---~~~~v~~r~~~gyDHSY 262 (283)
T KOG3101|consen 246 ---WQAPVVFRLQEGYDHSY 262 (283)
T ss_pred ---ccccEEEEeecCCCcce
Confidence 24788999999999964
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-08 Score=103.80 Aligned_cols=304 Identities=13% Similarity=0.051 Sum_probs=152.5
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEE
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIK 173 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~ 173 (734)
+++..+|.++.|..+..+ ...||.++..+++.++|+|...- . ..+..+||+.+.|.|..+. ..|+.+
T Consensus 41 ~~ft~dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g~---~---~~g~~~s~~~~~~~Yv~~~-----~~l~~v 107 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPGD---N---TFGGFLSPDDRALYYVKNG-----RSLRRV 107 (386)
T ss_dssp --B-TTS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS-B-------TTT-EE-TTSSEEEEEETT-----TEEEEE
T ss_pred CCcCCCCCEEEEEeccCC--CcceEEEEcccCEEEECccCCCC---C---ccceEEecCCCeEEEEECC-----CeEEEE
Confidence 556688999999777553 46699999999999999995421 1 1246789999999997642 368999
Q ss_pred ECCCCCcccc-cccccccCeeEEE--cCCcEEEEEEEecCCCCC-CCC-----cccccCCcEEEEEECCCCCCCCeeEEe
Q psy4818 174 DVDTGKDYPE-VLKNVKFPSISWT--HDHKGFFYNQYCDINGTA-DGT-----ETTAHMGQKIYYHVLGTEQDKDIPVVE 244 (734)
Q Consensus 174 dl~~g~~~~~-~~~~~~~~~~~wS--pDg~~l~y~~~~~~~~~~-~~~-----~~~~~~~~~l~~~~l~t~~~~~~~v~~ 244 (734)
|++|++.... ...........|+ .|++.++.+......... ... ........+|+.+++.+++ ...|++
T Consensus 108 dL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~ 185 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFE 185 (386)
T ss_dssp ETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEE
T ss_pred ECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEe
Confidence 9999875321 1121111345674 467777776653321100 000 0012345689999999875 446666
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEecCCCC---ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEe
Q psy4818 245 FPNGRSLGLHSEVTDCGRYLLVSTSNNTQG---SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321 (734)
Q Consensus 245 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~---~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s 321 (734)
+. .|...+.+||..-.++...+++... .+||+++.++....++ .+.......+++.|++||..|+|.+
T Consensus 186 ~~---~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v------~~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 186 DT---DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV------HRRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp ES---S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES------S---TTEEEEEEEE-TTSS-EEEEE
T ss_pred cC---ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee------ecCCCCcccccccccCCCCEEEEEe
Confidence 53 3777889999655444444443332 5999999887322111 1122223345567999999998876
Q ss_pred C-CCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC--------------CceeEEEEECCCC
Q psy4818 322 T-KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN--------------VRSVMDLHDLNTG 386 (734)
Q Consensus 322 ~-~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~l~~~dl~~g 386 (734)
- ..+..+-|+.+++++++ ...+...+.. .-+....++.+++--..+ ..+.||+++++.+
T Consensus 257 ~~~~~~~~~i~~~d~~t~~----~~~~~~~p~~--~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGE----RRRLMEMPWC--SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EETTT--EEEEEE-TTT------EEEEEEE-SE--EEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred ecCCCCceEEEeeCCCCCC----ceEEEeCCce--eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 4 34445669999998876 2223322221 122222224444322211 1247888898766
Q ss_pred ceeeeeCCCC-----------ceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 387 KRLHSFPLDL-----------GQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 387 ~~~~~l~~~~-----------g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+. ..|.... -.-..++++||++.++|. |.+.-++.||..++
T Consensus 331 ~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~-Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 331 RF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR-SDMEGPPAVYLVEI 382 (386)
T ss_dssp EE-EEEEE-------BTTBSSTT----EE-TTSSEEEEE-E-TTSS-EEEEEE-
T ss_pred ce-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE-CCCCCCccEEEEeC
Confidence 54 2221110 011246788999888876 45566788999988
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=119.34 Aligned_cols=182 Identities=16% Similarity=0.095 Sum_probs=104.9
Q ss_pred HHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc-EEEEEcChHHHHHHHHHhcCCCc
Q psy4818 514 LRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY-ITIMGGSNGGLLVGACLNQRPEL 592 (734)
Q Consensus 514 l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~~ 592 (734)
|...+|.|+++|+||.|+.. . ....++|+...+..+++.- +.++ +.++|+|+||++++.++.++|++
T Consensus 95 L~~~~~~Vi~~Dl~G~g~s~----~------~~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~~ 162 (343)
T PRK08775 95 LDPARFRLLAFDFIGADGSL----D------VPIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPAR 162 (343)
T ss_pred cCccccEEEEEeCCCCCCCC----C------CCCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChHh
Confidence 43348999999999954321 1 1123455555555555442 2334 57999999999999999999999
Q ss_pred eeEEEEcCCcchhc-------ccccc------c-----cC---------c-c-----cccccCCCCC-------HHHH--
Q psy4818 593 YGAALILVGALDML-------RFNKF------T-----IA---------Y-Y-----SESEFGSPNN-------KTHF-- 630 (734)
Q Consensus 593 ~~a~v~~~~~~d~~-------~~~~~------~-----~~---------~-~-----~~~~~g~~~~-------~~~~-- 630 (734)
++++|+.++..... ..... . .+ . . +...|..... ....
T Consensus 163 V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK08775 163 VRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDY 242 (343)
T ss_pred hheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHH
Confidence 99999887643210 00000 0 00 0 0 0001111000 0000
Q ss_pred ------HHHHhCCc-----------cC--CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcE
Q psy4818 631 ------HNLLSYSP-----------LH--NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPL 691 (734)
Q Consensus 631 ------~~~~~~sp-----------~~--~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~ 691 (734)
......++ .. .+. .++.| +||++|++|..+|+.++.++.+.+.. ..
T Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~I~~P-tLvi~G~~D~~~p~~~~~~~~~~i~p----------~a 307 (343)
T PRK08775 243 LDAAGAQYVARTPVNAYLRLSESIDLHRVDPE----AIRVP-TVVVAVEGDRLVPLADLVELAEGLGP----------RG 307 (343)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHhhcCCChh----cCCCC-eEEEEeCCCEeeCHHHHHHHHHHcCC----------CC
Confidence 00111111 01 122 27777 99999999999999988887776631 23
Q ss_pred EEEEeCC-CCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 692 LLRVEQD-AGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 692 ~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
++.++++ +||...-... .+....+.+||.+.
T Consensus 308 ~l~~i~~~aGH~~~lE~P--e~~~~~l~~FL~~~ 339 (343)
T PRK08775 308 SLRVLRSPYGHDAFLKET--DRIDAILTTALRST 339 (343)
T ss_pred eEEEEeCCccHHHHhcCH--HHHHHHHHHHHHhc
Confidence 6788884 9998765443 35555677888653
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=112.33 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=69.0
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||..++.. .|.... ..| + +|.|+++|+||.|.... . ....++++...+..++++. ..
T Consensus 2 ~p~vvllHG~~~~~~--~w~~~~-~~l-~-~~~vi~~D~~G~G~S~~---~------~~~~~~~~~~~l~~~l~~~--~~ 65 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ--DWQPVG-EAL-P-DYPRLYIDLPGHGGSAA---I------SVDGFADVSRLLSQTLQSY--NI 65 (242)
T ss_pred CCEEEEECCCCCChH--HHHHHH-HHc-C-CCCEEEecCCCCCCCCC---c------cccCHHHHHHHHHHHHHHc--CC
Confidence 478999999876654 444433 455 3 79999999999654321 1 1124556555555555542 34
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCC-ceeEEEEcCCc
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPE-LYGAALILVGA 602 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~~~~ 602 (734)
+++.++|||+||.+++.++.++|+ +++++|+.++.
T Consensus 66 ~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 66 LPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred CCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 689999999999999999999865 48888876644
|
|
| >KOG3043|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.4e-10 Score=101.69 Aligned_cols=198 Identities=17% Similarity=0.261 Sum_probs=133.8
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc--------hhhhccccc
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE--------DWHNAGRLL 543 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~--------~~~~~~~~~ 543 (734)
+.+++..... .+ -+||.+---+|.+... -...+..++..||.|++||+-.|.-+.. .|.+ +.
T Consensus 28 ldaYv~gs~~----~~-~~li~i~DvfG~~~~n--~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~---~~ 97 (242)
T KOG3043|consen 28 LDAYVVGSTS----SK-KVLIVIQDVFGFQFPN--TREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMK---GH 97 (242)
T ss_pred eeEEEecCCC----CC-eEEEEEEeeeccccHH--HHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHh---cC
Confidence 5566654332 12 3455544444433221 1224566777899999999975521111 1222 23
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCC
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGS 623 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~ 623 (734)
.-...+.|+.+.++||..++ ++.+||++|..+||-++..+.+..| +|.++++..|..
T Consensus 98 ~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~-------------------- 154 (242)
T KOG3043|consen 98 SPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSF-------------------- 154 (242)
T ss_pred CcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCc--------------------
Confidence 34566899999999999764 5679999999999999999988877 788888877633
Q ss_pred CCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC
Q psy4818 624 PNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 624 ~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~ 703 (734)
.+.++. .+ +++| +|++.|+.|..+|+.....+-++|++. . ..-..+.+|++-+|+|
T Consensus 155 -~d~~D~---------~~-------vk~P-ilfl~ae~D~~~p~~~v~~~ee~lk~~----~--~~~~~v~~f~g~~HGf 210 (242)
T KOG3043|consen 155 -VDSADI---------AN-------VKAP-ILFLFAELDEDVPPKDVKAWEEKLKEN----P--AVGSQVKTFSGVGHGF 210 (242)
T ss_pred -CChhHH---------hc-------CCCC-EEEEeecccccCCHHHHHHHHHHHhcC----c--ccceeEEEcCCccchh
Confidence 111111 23 4556 999999999999999888888888765 1 1225799999999998
Q ss_pred CC-------ch--HHhHHHHHHHHHHHHHHcC
Q psy4818 704 GT-------PL--MKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 704 ~~-------~~--~~~~~~~~~~~~fl~~~l~ 726 (734)
.. ++ ....+.+++++.||.++|.
T Consensus 211 ~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 211 VARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred hhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 63 21 2235677889999998873
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=113.64 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=75.1
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.||++||.+.... .|.. .+..|++ +|.|+++|+||.|.... ... .......++++...+..++++- .
T Consensus 126 ~~~~ivllHG~~~~~~--~w~~-~~~~L~~-~~~Via~DlpG~G~S~~---p~~-~~~~~ys~~~~a~~l~~~i~~l--~ 195 (383)
T PLN03084 126 NNPPVLLIHGFPSQAY--SYRK-VLPVLSK-NYHAIAFDWLGFGFSDK---PQP-GYGFNYTLDEYVSSLESLIDEL--K 195 (383)
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHhc-CCEEEEECCCCCCCCCC---Ccc-cccccCCHHHHHHHHHHHHHHh--C
Confidence 4578999999765443 3443 3456765 99999999999553221 100 0011345677777666666552 3
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
.+++.|+|+|+||.+++.++.++|++++++|+.+|..
T Consensus 196 ~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 196 SDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 3579999999999999999999999999999888753
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-09 Score=104.02 Aligned_cols=240 Identities=15% Similarity=0.137 Sum_probs=140.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-ccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNV-KFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
..+-...||++|+|||-++.+. ..-||.+.-.+.-.+..+. +.. .+..+.||||.++|+-+..++
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e---------- 291 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE---------- 291 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH----------
Confidence 3467899999999999665432 1234444333331121121 111 236789999999999887654
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.+++|++.++.. +..+... ......+.+|-|||..++.- .....++.||+++.. ...|+-.
T Consensus 292 ------~~~lwDv~tgd~--~~~y~~~-~~~S~~sc~W~pDg~~~V~G----s~dr~i~~wdlDgn~------~~~W~gv 352 (519)
T KOG0293|consen 292 ------VLSLWDVDTGDL--RHLYPSG-LGFSVSSCAWCPDGFRFVTG----SPDRTIIMWDLDGNI------LGNWEGV 352 (519)
T ss_pred ------heeeccCCcchh--hhhcccC-cCCCcceeEEccCCceeEec----CCCCcEEEecCCcch------hhccccc
Confidence 488999988753 2333322 11234578999999997632 222689999998722 1233321
Q ss_pred eccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeE
Q psy4818 300 IPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378 (734)
Q Consensus 300 ~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 378 (734)
-. ...+. ..++||++++.++.. .++..++..+... +.++.+. ..+..+.+..++++++....+ ..+
T Consensus 353 r~--~~v~dlait~Dgk~vl~v~~d----~~i~l~~~e~~~d---r~lise~--~~its~~iS~d~k~~LvnL~~--qei 419 (519)
T KOG0293|consen 353 RD--PKVHDLAITYDGKYVLLVTVD----KKIRLYNREARVD---RGLISEE--QPITSFSISKDGKLALVNLQD--QEI 419 (519)
T ss_pred cc--ceeEEEEEcCCCcEEEEEecc----cceeeechhhhhh---hcccccc--CceeEEEEcCCCcEEEEEccc--Cee
Confidence 11 11222 278999999887743 3577777765431 3345443 455666666667776665544 579
Q ss_pred EEEECCCCceeeeeCCC-CceE-EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 379 DLHDLNTGKRLHSFPLD-LGQI-THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 379 ~~~dl~~g~~~~~l~~~-~g~v-~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+||++..+.+++..+. .+.. ..-++-...+.++.+.|. -..+|+++.
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE---D~kvyIWhr 469 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE---DSKVYIWHR 469 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC---CceEEEEEc
Confidence 99999755555555444 2322 122222222345444433 358999998
|
|
| >KOG4627|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-11 Score=105.82 Aligned_cols=223 Identities=13% Similarity=0.117 Sum_probs=141.0
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..+.+.|-- .|. --+-++.|. ...|++|++||||..............-+.++||+|+.++|--..+
T Consensus 44 r~e~l~Yg~-~g~-q~VDIwg~~-----~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q------ 110 (270)
T KOG4627|consen 44 RVEHLRYGE-GGR-QLVDIWGST-----NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ------ 110 (270)
T ss_pred chhccccCC-CCc-eEEEEecCC-----CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc------
Confidence 455555532 332 223444453 4678999999999776554443333344556799999998754221
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcchhccccccccCcc
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGALDMLRFNKFTIAYY 616 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~d~~~~~~~~~~~~ 616 (734)
...-...+.++...++|+.+. +-..+.+.+.|||+|+.|++.++++. ..++.+++..+|+.++......+.+
T Consensus 111 ----~htL~qt~~~~~~gv~filk~-~~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g-- 183 (270)
T KOG4627|consen 111 ----VHTLEQTMTQFTHGVNFILKY-TENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESG-- 183 (270)
T ss_pred ----cccHHHHHHHHHHHHHHHHHh-cccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccc--
Confidence 111124577888899998765 33445699999999999999988753 2367899999999988765443322
Q ss_pred cccccCCCCCHHHHHHHHhCCcc-CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEE
Q psy4818 617 SESEFGSPNNKTHFHNLLSYSPL-HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695 (734)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~sp~-~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 695 (734)
...|.-... ....|+- ...+. ++.| +||+.+.+|.---++|.+.|+..++.+ .+..
T Consensus 184 --~dlgLt~~~-----ae~~Scdl~~~~~----v~~~-ilVv~~~~espklieQnrdf~~q~~~a-----------~~~~ 240 (270)
T KOG4627|consen 184 --NDLGLTERN-----AESVSCDLWEYTD----VTVW-ILVVAAEHESPKLIEQNRDFADQLRKA-----------SFTL 240 (270)
T ss_pred --cccCcccch-----hhhcCccHHHhcC----ceee-eeEeeecccCcHHHHhhhhHHHHhhhc-----------ceee
Confidence 122222111 1233332 12222 4455 999999999988899999999999876 5778
Q ss_pred eCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 696 EQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+++.+|.-.-... +.....+..|+.+.+
T Consensus 241 f~n~~hy~I~~~~--~~~~s~~~~~~~~~~ 268 (270)
T KOG4627|consen 241 FKNYDHYDIIEET--AIDDSDVSRFLRNIE 268 (270)
T ss_pred cCCcchhhHHHHh--ccccchHHHHHHHHh
Confidence 8999995321111 122234566666543
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=100.42 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC
Q psy4818 273 QGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE 351 (734)
Q Consensus 273 ~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 351 (734)
+...+++|+... . ..+..+++.+......+ ||||+++|+-.+-. ..+-+|+..+++ .-..+.+.-
T Consensus 344 Dd~tlflW~p~~-~------kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD----kSVkLW~g~tGk---~lasfRGHv 409 (480)
T KOG0271|consen 344 DDFTLFLWNPFK-S------KKPITRMTGHQALVNHVSFSPDGRYIASASFD----KSVKLWDGRTGK---FLASFRGHV 409 (480)
T ss_pred CCceEEEecccc-c------ccchhhhhchhhheeeEEECCCccEEEEeecc----cceeeeeCCCcc---hhhhhhhcc
Confidence 346788887654 1 12334444444433343 99999877754432 347788887775 222223222
Q ss_pred CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEE
Q psy4818 352 NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVF 412 (734)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~ 412 (734)
..+++ +.+..+.+|+++.+.+ +.|.+|++.+.+....|+.....|..+.++|||.++.
T Consensus 410 ~~VYq-vawsaDsRLlVS~SkD--sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 410 AAVYQ-VAWSADSRLLVSGSKD--STLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred ceeEE-EEeccCccEEEEcCCC--ceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 33444 3444558999998877 6899999987777677776666788999999997664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-08 Score=100.86 Aligned_cols=212 Identities=17% Similarity=0.120 Sum_probs=117.9
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
..+.|+|||++++.+.... ..|+++|+.+++.+...........+.|+|||+.+++...+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--------------- 136 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDD----NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT--------------- 136 (300)
T ss_pred cEEEECCCCCEEEEEcCCC----CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC---------------
Confidence 4678999999886654322 379999999876543222222236789999999888766421
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCC-cccCCCCceeeecc-
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG-KISGKFPLKTVIPG- 302 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~l~~~- 302 (734)
..++.++..+.... ....... ....+.|+|||++|++... ....|++||+.++... .+.. ........
T Consensus 137 ~~~~~~d~~~~~~~--~~~~~~~---~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~--~~~~~~~~~ 206 (300)
T TIGR03866 137 NMAHFIDTKTYEIV--DNVLVDQ---RPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITF--EIPGVHPEA 206 (300)
T ss_pred CeEEEEeCCCCeEE--EEEEcCC---CccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeee--ccccccccc
Confidence 13555565543211 1111111 1235789999999876532 2257999999873210 0000 00000000
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEE
Q psy4818 303 MDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 303 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~ 381 (734)
.....-.+++||+.+++.... ..+|.++|+++.+ ....+... . .+..+.+. +++.+++....+ ..|.+|
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~---~~~i~v~d~~~~~---~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~--~~i~v~ 276 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGP---ANRVAVVDAKTYE---VLDYLLVG-Q-RVWQLAFTPDEKYLLTTNGVS--NDVSVI 276 (300)
T ss_pred CCccceEECCCCCEEEEEcCC---CCeEEEEECCCCc---EEEEEEeC-C-CcceEEECCCCCEEEEEcCCC--CeEEEE
Confidence 000111388999987664432 2358999987654 22222222 1 22334443 434454433223 579999
Q ss_pred ECCCCceeeeeCCC
Q psy4818 382 DLNTGKRLHSFPLD 395 (734)
Q Consensus 382 dl~~g~~~~~l~~~ 395 (734)
|+.+++.++.+...
T Consensus 277 d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 277 DVAALKVIKSIKVG 290 (300)
T ss_pred ECCCCcEEEEEEcc
Confidence 99988877777643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=109.74 Aligned_cols=232 Identities=16% Similarity=0.134 Sum_probs=143.0
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC-CCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV-DTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl-~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
++...+..+.|||||++|+= ++...+|++||+ +.+..+....+. ......+|+|+|+.|+-.+.|.
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s-----~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~------- 268 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLS-----GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG------- 268 (456)
T ss_pred ccccceeeeEECCCCcEEEE-----ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCC-------
Confidence 45677899999999997773 345579999999 444544322222 2347899999997666666543
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
.|++|++.++... ..+. .+...+..+++++||++|+-. .....|.+||+.++... ..
T Consensus 269 ---------tvriWd~~~~~~~--~~l~--~hs~~is~~~f~~d~~~l~s~----s~d~~i~vwd~~~~~~~------~~ 325 (456)
T KOG0266|consen 269 ---------TVRIWDVRTGECV--RKLK--GHSDGISGLAFSPDGNLLVSA----SYDGTIRVWDLETGSKL------CL 325 (456)
T ss_pred ---------cEEEEeccCCeEE--Eeee--ccCCceEEEEECCCCCEEEEc----CCCccEEEEECCCCcee------ee
Confidence 6899999885422 2222 334466789999999999843 22368999999984211 01
Q ss_pred eeeeccccc--eEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCC-ceeEEEEEeeCCEEEEEEEe
Q psy4818 297 KTVIPGMDH--HHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDEN-RTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 297 ~~l~~~~~~--~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~ 372 (734)
..+...... .... |+|+|+.++..+. +..|..|++..+.. ......+... .-+.......++.++++...
T Consensus 326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 326 KLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSGKS--VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred ecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCCcc--eeeecccCCcceeEecccccCCCCeEEEEeC
Confidence 112222222 2223 8999988776543 34588888876541 2333333322 11112222333566666666
Q ss_pred CCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEE
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFY 413 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~ 413 (734)
+ ..+++|++.++..+..+... ...+..+++++....+..
T Consensus 400 d--~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 400 D--GSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred C--ceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeee
Confidence 5 47999999888777777766 566666666666654443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=96.65 Aligned_cols=231 Identities=15% Similarity=0.115 Sum_probs=122.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
.....|.+||++|.|.++..|. .++|++|+++++.++.|.+.. ...+..+||+++.|+|....
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~--~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------------- 101 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGN--RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------------- 101 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT--------------
T ss_pred ecCCCcCCCCCEEEEEeccCCC--cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC--------------
Confidence 3467899999999999998766 789999999999877765432 22467899999999998742
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEE--ecCCcEEEEEEecCCC------------------CceEEEEeC
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV--TDCGRYLLVSTSNNTQ------------------GSDLHYFDL 282 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~------------------~~~i~~~d~ 282 (734)
..|+.++|.|.. ...|++.+++ |.....| +.|++.++.......+ .+.|+.+|+
T Consensus 102 --~~l~~vdL~T~e--~~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 102 --RSLRRVDLDTLE--ERVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp --TEEEEEETTT----EEEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred --CeEEEEECCcCc--EEEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 279999999874 4478887653 4443455 4678887655432111 158999999
Q ss_pred CCCCCCcccCCCCceeeecccc-ceEEEEEecCCeEEEEeCCC---CCCceEEEEecCCCCCCCceEeecCCCCceeEEE
Q psy4818 283 HSLPDGKISGKFPLKTVIPGMD-HHHEIIANNGPELIVKTTKN---APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV 358 (734)
Q Consensus 283 ~~~~~~~l~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 358 (734)
.+|. ...+..... -++..+||....++..+.++ .-..+|+.++.++.. .+.+.+..+...+.--
T Consensus 176 ~tG~---------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 176 KTGE---------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRMEGESVGHE 243 (386)
T ss_dssp TT-----------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEEEEEE
T ss_pred CCCc---------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCCCcccccc
Confidence 9842 333433222 23334777554444444332 224589999988765 3555544444443333
Q ss_pred E-EeeCCEEEEEEE-eCCc-eeEEEEECCCCceeeeeCCCCceEEeeccCcccce
Q psy4818 359 A-AVANNKLIVHYI-QNVR-SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNE 410 (734)
Q Consensus 359 ~-~~~~~~l~~~~~-~~~~-~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~ 410 (734)
+ .+++..|.+... ..+. ..|+.+|+.+++.......+. .+ .+..++|++-
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~-H~~ss~Dg~L 296 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CS-HFMSSPDGKL 296 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-EE-EEEE-TTSSE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-ee-eeEEcCCCCE
Confidence 3 345566666444 4442 368888998887633333332 22 3445566543
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-09 Score=100.69 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=86.7
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhH
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDD 551 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D 551 (734)
.+..+++|.. .+.+|+||+.||-. ..+.+-..+.+.+++.||+|+.+++..-.. .....+.++
T Consensus 4 ~~l~v~~P~~---~g~yPVv~f~~G~~---~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~ 66 (259)
T PF12740_consen 4 KPLLVYYPSS---AGTYPVVLFLHGFL---LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVAS 66 (259)
T ss_pred CCeEEEecCC---CCCcCEEEEeCCcC---CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHH
Confidence 4678889987 58899999999864 223333345567788999999999654111 122345678
Q ss_pred HHHHHHHHHHc--C------CCCCCcEEEEEcChHHHHHHHHHhcC-----CCceeEEEEcCCcch
Q psy4818 552 FQAAAEYMINK--K------YTKPKYITIMGGSNGGLLVGACLNQR-----PELYGAALILVGALD 604 (734)
Q Consensus 552 ~~~~~~~l~~~--~------~~d~~ri~i~G~S~GG~~~~~~~~~~-----p~~~~a~v~~~~~~d 604 (734)
+...++||.+. . ..|-+||+|+|||.||-++..++.++ +.+|+++|+.-|+--
T Consensus 67 ~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 67 AAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred HHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 88889998763 1 25888999999999999999998876 458999999998763
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG1454|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=111.11 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=125.2
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
...|.||++||.-++ ...|...+-.+-...|+.|.++|..|.|-. .....+ ......+....++.+..+...
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~--s~~~~~----~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPGHGYS--SPLPRG----PLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCCCCcC--CCCCCC----CceehhHHHHHHHHHHHhhcC
Confidence 467889999996443 334444332222223699999999994421 112211 125566777777666555333
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEE---EcCCcchhcccc--------c-------------cccC-cccccc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAAL---ILVGALDMLRFN--------K-------------FTIA-YYSESE 620 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v---~~~~~~d~~~~~--------~-------------~~~~-~~~~~~ 620 (734)
. ++.++|+|+||+++..+|+.+|+..+.+| ...+........ . .... ..|...
T Consensus 128 ~--~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 E--PVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred c--ceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 3 39999999999999999999999999988 444322111000 0 0000 001000
Q ss_pred --------cCCC-CCHHHHHHH------------------Hh-----CCccCCCCCCCCCccCCcEEEEecCCCCCCCCh
Q psy4818 621 --------FGSP-NNKTHFHNL------------------LS-----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL 668 (734)
Q Consensus 621 --------~g~~-~~~~~~~~~------------------~~-----~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~ 668 (734)
+.++ ...+....+ .. ..+...++.. .++| +||++|+.|..+|.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~p-vlii~G~~D~~~p~~ 281 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKI---WKCP-VLIIWGDKDQIVPLE 281 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccc---cCCc-eEEEEcCcCCccCHH
Confidence 0011 001110000 00 1111233431 3477 999999999999998
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 669 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 669 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
.+..+.+.+. .+++.+.+++||.-.-... .+..+.+..|+..+.
T Consensus 282 ~~~~~~~~~p-----------n~~~~~I~~~gH~~h~e~P--e~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 282 LAEELKKKLP-----------NAELVEIPGAGHLPHLERP--EEVAALLRSFIARLR 325 (326)
T ss_pred HHHHHHhhCC-----------CceEEEeCCCCcccccCCH--HHHHHHHHHHHHHhc
Confidence 7766666552 3588999999998766443 466777889988753
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=125.22 Aligned_cols=131 Identities=18% Similarity=0.104 Sum_probs=92.7
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcC-eEEEEEecc-cCCCCCchhhhccccccCCCc
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN-GIYAIPNIR-GGGELGEDWHNAGRLLKKQNC 548 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~r-G~~~~g~~~~~~~~~~~~~~~ 548 (734)
-+...++.|......++.|+||++|||.......... ....++.+.+ ++|+.+||| |..+|...... ...+-..
T Consensus 78 cl~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~~~n~g 153 (493)
T cd00312 78 CLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---ELPGNYG 153 (493)
T ss_pred CCeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCC---CCCcchh
Confidence 5778888887654457889999999996443333221 1223444334 999999999 55555432211 1223345
Q ss_pred hhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcchh
Q psy4818 549 FDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGALDM 605 (734)
Q Consensus 549 ~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~d~ 605 (734)
+.|++++++|+.++ --.||++|.|+|+|+||+++.+++.. .+.+|+++|+.+|....
T Consensus 154 ~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 154 LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 78999999999775 13799999999999999999998875 34589999998886543
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=117.00 Aligned_cols=218 Identities=20% Similarity=0.189 Sum_probs=131.5
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCC---CCcCCccccHHHHHHHHhcC-eEEEEEecccCCCCCc-hhhhcc--ccc
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGY---GVSVLPTFSISRCMFLRHFN-GIYAIPNIRGGGELGE-DWHNAG--RLL 543 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~~l~~~G-~~v~~~~~rG~~~~g~-~~~~~~--~~~ 543 (734)
-+..-|+.|+ .+.++.||+||+|||. |+...+.|.. +.|+++| ++|+.+|||-|- +|- ++.... ...
T Consensus 79 CL~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydg---s~La~~g~vVvVSvNYRLG~-lGfL~~~~~~~~~~~ 152 (491)
T COG2272 79 CLYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDG---SALAARGDVVVVSVNYRLGA-LGFLDLSSLDTEDAF 152 (491)
T ss_pred ceeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccCh---HHHHhcCCEEEEEeCccccc-ceeeehhhccccccc
Confidence 4678888888 3456799999999983 3444555665 4466678 999999999754 331 222211 111
Q ss_pred cCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEEEcCCcchhccccc--cccCc
Q psy4818 544 KKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQRPE---LYGAALILVGALDMLRFNK--FTIAY 615 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v~~~~~~d~~~~~~--~~~~~ 615 (734)
..-.-+.|++.+++|+.++ ---||+.|.|+|.|+|++.++.+++. |. +|+-+|+.+|-.-...... ...+.
T Consensus 153 ~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~~~~s~~~A~~~a~ 231 (491)
T COG2272 153 ASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAASRVTSREEAREKAA 231 (491)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCCccCcHHHHHHHHH
Confidence 1124588999999999776 23699999999999999999999875 55 8888888877654222110 01112
Q ss_pred ccccccCCCCCHHHHHHHHhCCccCCCCCCCCC-ccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEE
Q psy4818 616 YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNN-TQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLR 694 (734)
Q Consensus 616 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~-~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 694 (734)
.+...+|.+ .+..+.|...++..-++.-... ....-+....-.-|+.+-+....++.+.-+.. ++|+.+-
T Consensus 232 ~f~~~lG~~--~~~~~~L~~~~~~~L~~~~~~~~~~~~~~~~~~p~~~d~~lp~~P~e~~~~g~~~-------~vpl~iG 302 (491)
T COG2272 232 AFARALGIP--EATLDKLRALSAEDLVKARLPLIGRTFGAVPYGPVLGDSLLPRDPLEAIAQGRSH-------GVPLMIG 302 (491)
T ss_pred HHHHHhCCC--HHHHHHHhcCCHHHHHhhhhhhccccCCCcCCCCccCcccccCChhhhhhccccc-------CCcEEee
Confidence 233445766 3445555555553221110000 00000111122234446666777777766666 7888776
Q ss_pred EeCCCCCCCC
Q psy4818 695 VEQDAGHGQG 704 (734)
Q Consensus 695 ~~~~~gH~~~ 704 (734)
+.-++|-.|.
T Consensus 303 tn~dEg~~f~ 312 (491)
T COG2272 303 TNHDEGSLFI 312 (491)
T ss_pred ccCCcceEEe
Confidence 6666666553
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-09 Score=128.31 Aligned_cols=225 Identities=14% Similarity=0.093 Sum_probs=125.8
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|+||++||..+... .|.. ....|.+ +|.|+++|+||.|.....-............++++.+.+..++++ ..
T Consensus 1370 ~~~~vVllHG~~~s~~--~w~~-~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~ 1443 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE--DWIP-IMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--IT 1443 (1655)
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hC
Confidence 4578999999866654 3443 3355654 799999999996644211000000011123466666666555554 34
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc--c--ccc-----------cCc-ccccccCCC------
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF--N--KFT-----------IAY-YSESEFGSP------ 624 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~--~--~~~-----------~~~-~~~~~~g~~------ 624 (734)
.+++.++|||+||.+++.++.++|++++++|+..+...+... . ... .+. .+...|..+
T Consensus 1444 ~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 1523 (1655)
T PLN02980 1444 PGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSL 1523 (1655)
T ss_pred CCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhh
Confidence 568999999999999999999999999988876643211100 0 000 000 000001000
Q ss_pred -CCHHH----------------HHHHHhCCcc------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q psy4818 625 -NNKTH----------------FHNLLSYSPL------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681 (734)
Q Consensus 625 -~~~~~----------------~~~~~~~sp~------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~ 681 (734)
..+.. ...+...+.. ..+.. ++.| +|+++|++|..++ ..+.++.+.+.+..
T Consensus 1524 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~----I~~P-tLlI~Ge~D~~~~-~~a~~~~~~i~~a~ 1597 (1655)
T PLN02980 1524 RNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQ----CDTP-LLLVVGEKDVKFK-QIAQKMYREIGKSK 1597 (1655)
T ss_pred ccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhh----CCCC-EEEEEECCCCccH-HHHHHHHHHccccc
Confidence 00000 0011111100 11222 6777 9999999998764 66777776665420
Q ss_pred CCCC-CCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 682 GSLP-YQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 682 ~~~~-~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
.... .....+++++++++||...-... .+....+..||.+.-
T Consensus 1598 ~~~~~~~~~~a~lvvI~~aGH~~~lE~P--e~f~~~I~~FL~~~~ 1640 (1655)
T PLN02980 1598 ESGNDKGKEIIEIVEIPNCGHAVHLENP--LPVIRALRKFLTRLH 1640 (1655)
T ss_pred cccccccccceEEEEECCCCCchHHHCH--HHHHHHHHHHHHhcc
Confidence 0000 00112688999999998764433 356666788988754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-08 Score=100.28 Aligned_cols=232 Identities=11% Similarity=0.111 Sum_probs=147.5
Q ss_pred CcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEEC
Q psy4818 153 GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVL 232 (734)
Q Consensus 153 G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l 232 (734)
|.+|.|++.. +||.+++.+|+.+..+.+-.-...+.+||||+.|+|++.-.. ++.....||.++.
T Consensus 50 GD~IiFt~~D------dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~---------ss~~taDly~v~~ 114 (668)
T COG4946 50 GDRIIFTCCD------DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLG---------SSLQTADLYVVPS 114 (668)
T ss_pred CcEEEEEech------HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEec---------CCCccccEEEEeC
Confidence 8889998853 599999999987665543322367889999999999765321 1334457999999
Q ss_pred CCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCC--ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEE
Q psy4818 233 GTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQG--SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEII 310 (734)
Q Consensus 233 ~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~--~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 310 (734)
..++.+.+.-|.. .+..-+.|+|||+.|+.+.-..... ..+|.+..++... .+|- .......+
T Consensus 115 e~Ge~kRiTyfGr----~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~---------e~Ln--lGpathiv 179 (668)
T COG4946 115 EDGEAKRITYFGR----RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT---------EPLN--LGPATHIV 179 (668)
T ss_pred CCCcEEEEEEecc----ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee---------eecc--CCceeeEE
Confidence 8888776665532 2334468999999998754332221 6788888877322 1221 12222334
Q ss_pred EecCCeEEEEeC----------CCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 311 ANNGPELIVKTT----------KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 311 s~dg~~l~~~s~----------~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
-.|| .+++-.| +++.+++|+.-.-.+.. ++.++.-. .++ ++..+.. +++||.+..+|..+||.
T Consensus 180 ~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~t---FeK~vdl~-~~v-S~PmIV~-~RvYFlsD~eG~GnlYS 252 (668)
T COG4946 180 IKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKT---FEKFVDLD-GNV-SSPMIVG-ERVYFLSDHEGVGNLYS 252 (668)
T ss_pred EeCC-EEEEccCcccCcccccccCCccceEEEEecCCcc---eeeeeecC-CCc-CCceEEc-ceEEEEecccCccceEE
Confidence 4555 3444333 23556667654433323 34444333 333 3333444 79999999999999999
Q ss_pred EECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|+ +|+.+++-+.- +.. .-..+.||++++|+.. +.+|.||.
T Consensus 253 vdl-dGkDlrrHTnFtdYY--~R~~nsDGkrIvFq~~-----GdIylydP 294 (668)
T COG4946 253 VDL-DGKDLRRHTNFTDYY--PRNANSDGKRIVFQNA-----GDIYLYDP 294 (668)
T ss_pred ecc-CCchhhhcCCchhcc--ccccCCCCcEEEEecC-----CcEEEeCC
Confidence 999 78877665532 222 2334568888887654 47999999
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=115.16 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=107.8
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccc--cHHHHH---HHHhcCeEEEEEecccCC
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTF--SISRCM---FLRHFNGIYAIPNIRGGG 530 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~~---~l~~~G~~v~~~~~rG~~ 530 (734)
.+..+.+.++-+||+++...||+|++ .++.|+++..+-.|-......+ +...+. +++.+||+|+..|.||.+
T Consensus 16 ~~~~~~v~V~MRDGvrL~~dIy~Pa~---~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 16 GYIERDVMVPMRDGVRLAADIYRPAG---AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred ceeeeeeeEEecCCeEEEEEEEccCC---CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 36778899999999999999999997 3889999988733221111111 111122 455679999999999977
Q ss_pred CCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc
Q psy4818 531 ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR 607 (734)
Q Consensus 531 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~ 607 (734)
+....|... .. .+.+|-.++|+||.++.+.+ .+|+.+|.||+|+...++|+..|--.||++..++..|+.+
T Consensus 93 ~SeG~~~~~----~~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~ 163 (563)
T COG2936 93 GSEGVFDPE----SS-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYR 163 (563)
T ss_pred cCCccccee----cc-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccc
Confidence 654333321 11 37889999999999999977 5899999999999999999877666699999999888653
|
|
| >KOG4409|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.3e-09 Score=102.12 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=81.1
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..+.+.+. ++.++...-+.+.. ...+.+|++||- |.... .|..++ .-|++ ...|.++|..| +|..-+
T Consensus 66 ~~~~v~i~--~~~~iw~~~~~~~~----~~~~plVliHGy-GAg~g-~f~~Nf-~~La~-~~~vyaiDllG---~G~SSR 132 (365)
T KOG4409|consen 66 SKKYVRIP--NGIEIWTITVSNES----ANKTPLVLIHGY-GAGLG-LFFRNF-DDLAK-IRNVYAIDLLG---FGRSSR 132 (365)
T ss_pred ceeeeecC--CCceeEEEeecccc----cCCCcEEEEecc-chhHH-HHHHhh-hhhhh-cCceEEecccC---CCCCCC
Confidence 34444443 55566555555543 344556777874 33322 233333 44565 89999999999 443322
Q ss_pred hccccccCCCchhHHHHHHH-HHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 538 NAGRLLKKQNCFDDFQAAAE-YMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
..- ........+.++..++ |-++.+. +++.|+|||+|||++...|.++|+.++-.|+..|.
T Consensus 133 P~F-~~d~~~~e~~fvesiE~WR~~~~L---~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~ 194 (365)
T KOG4409|consen 133 PKF-SIDPTTAEKEFVESIEQWRKKMGL---EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPW 194 (365)
T ss_pred CCC-CCCcccchHHHHHHHHHHHHHcCC---cceeEeeccchHHHHHHHHHhChHhhceEEEeccc
Confidence 221 1223334446666665 4444443 48999999999999999999999999999988774
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-09 Score=106.32 Aligned_cols=228 Identities=18% Similarity=0.118 Sum_probs=141.9
Q ss_pred CCCCCcEEEEecCCCCCc-CCccccHHHHHHHHhcCeEEEEEecc--------------cC-CCCCchhhhccccccCCC
Q psy4818 484 RNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRHFNGIYAIPNIR--------------GG-GELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 484 ~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~r--------------G~-~~~g~~~~~~~~~~~~~~ 547 (734)
.+.+.|++++.||--... .-..+. .+....+..|++++.+|.. |+ .+|=.+|........ ..
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~-g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~ 127 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLD-GLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PY 127 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEecc-chhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-cc
Confidence 356789999998864332 111112 2334556679999887433 31 223234444321111 35
Q ss_pred chhHHHHH-HH-HHHHcCCCCC--CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc-------cCcc
Q psy4818 548 CFDDFQAA-AE-YMINKKYTKP--KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT-------IAYY 616 (734)
Q Consensus 548 ~~~D~~~~-~~-~l~~~~~~d~--~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-------~~~~ 616 (734)
.+++++.. +- .+.+...++. ++.+|.|+||||+-++.++.++|++|+.+.+.+|+++.......+ -+..
T Consensus 128 q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~ 207 (316)
T COG0627 128 QWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKA 207 (316)
T ss_pred chhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCcc
Confidence 56776653 33 3333444454 388999999999999999999999999999999999876433222 0111
Q ss_pred cccccCCCCCHHHHHHHHhCCccCCCCCCCCCc---------cCCcEEEEecCCCCCCC--ChHHHHHHHHHHhhhCCCC
Q psy4818 617 SESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNT---------QYPATLVLTGDHDDRVP--PLHSYKFIATLQEKIGSLP 685 (734)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~---------~~P~~Li~~g~~D~~v~--~~~~~~~~~~L~~~~~~~~ 685 (734)
+...||...+. ..++++|..++.+..... .-|++++.+|..|.... ...+..+.+++++.
T Consensus 208 ~~~~~G~~~~~----~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~----- 278 (316)
T COG0627 208 FNAMLGPDSDP----AWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAA----- 278 (316)
T ss_pred HHHhcCCCccc----cccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhc-----
Confidence 22234544321 234566655554200001 33558889999887553 23378899999988
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 686 YQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 686 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
|.+..+...++..|...- .-......+.|+...|+..
T Consensus 279 --g~~~~~~~~~~G~Hsw~~----w~~~l~~~~~~~a~~l~~~ 315 (316)
T COG0627 279 --GIPNGVRDQPGGDHSWYF----WASQLADHLPWLAGALGLA 315 (316)
T ss_pred --CCCceeeeCCCCCcCHHH----HHHHHHHHHHHHHHHhccC
Confidence 889888888889997632 2455667889999988753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-07 Score=92.23 Aligned_cols=237 Identities=17% Similarity=0.167 Sum_probs=141.8
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..+.|+|||++|++... ...|++|++.+++...... .......+.|+|+++.|+....+.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---------- 73 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDK---------- 73 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCC----------
Confidence 345889999999999987653 2479999998876432221 122224789999998887766432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|+++++.+... +..+.. .......+.|+|+++.++... ....|++|++.++. ....+
T Consensus 74 ------~i~i~~~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~--------~~~~~ 131 (289)
T cd00200 74 ------TIRLWDLETGEC--VRTLTG--HTSYVSSVAFSPDGRILSSSS----RDKTIKVWDVETGK--------CLTTL 131 (289)
T ss_pred ------eEEEEEcCcccc--eEEEec--cCCcEEEEEEcCCCCEEEEec----CCCeEEEEECCCcE--------EEEEe
Confidence 688888876432 222222 222456789999988766432 23689999998621 11112
Q ss_pred eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCC-EEEEEEEeCCcee
Q psy4818 300 IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANN-KLIVHYIQNVRSV 377 (734)
Q Consensus 300 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 377 (734)
.......... |+++++.++..+ . +..|..+|+.++.. ...+... ...+..+.+..++ .+++... + ..
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~-~---~~~i~i~d~~~~~~---~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-~--~~ 200 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSS-Q---DGTIKLWDLRTGKC---VATLTGH-TGEVNSVAFSPDGEKLLSSSS-D--GT 200 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEc-C---CCcEEEEEcccccc---ceeEecC-ccccceEEECCCcCEEEEecC-C--Cc
Confidence 1122222222 788866555433 1 24588899875441 2222222 2234445454434 4544443 3 57
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+||+.+++.+..+......+..+.++++ +.+++..+ ....++.+|+
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~ 248 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS---EDGTIRVWDL 248 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc---CCCcEEEEEc
Confidence 999999777776666444456667778877 44555544 2347889998
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=95.11 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=104.8
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCe--EEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNG--IYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|+|+||--.+..+... ....+++++.|. .+.++|++- ..++.++.++.++++. .+
T Consensus 1 ~ilYlHGF~Ssp~S~Ka-~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~ 58 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKA-QALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KP 58 (187)
T ss_pred CeEEecCCCCCCCCHHH-HHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CC
Confidence 48999996443332211 123456666553 455555432 1345566666666653 33
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc----ccccccCCCCCHHHHHHHHhCCccCCCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY----YSESEFGSPNNKTHFHNLLSYSPLHNIK 643 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~sp~~~~~ 643 (734)
+.++|+|.|+||+.+.+++.+++ .++ |+.+|.+........-++. .|...|.. ..+....++++.. ..+.
T Consensus 59 ~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~--~~~~~~~l~~l~~-~~~~ 132 (187)
T PF05728_consen 59 ENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYEL--TEEHIEELKALEV-PYPT 132 (187)
T ss_pred CCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCcccee--chHhhhhcceEec-cccC
Confidence 45999999999999999998875 345 7888888766554433333 22222211 2222333333221 1122
Q ss_pred CCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 644 VPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 644 ~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
.| . ++|+++++.|..+++.++.+.++ .. ...+.+|.+|.|..- .+....+++|+
T Consensus 133 ~~-----~-~~lvll~~~DEvLd~~~a~~~~~---~~-----------~~~i~~ggdH~f~~f----~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NP-----E-RYLVLLQTGDEVLDYREAVAKYR---GC-----------AQIIEEGGDHSFQDF----EEYLPQIIAFL 186 (187)
T ss_pred CC-----c-cEEEEEecCCcccCHHHHHHHhc---Cc-----------eEEEEeCCCCCCccH----HHHHHHHHHhh
Confidence 21 1 39999999999999966544443 21 334668899999753 34455677776
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=99.13 Aligned_cols=232 Identities=11% Similarity=0.064 Sum_probs=151.6
Q ss_pred CCcEEEeeEEeCCC--CcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 139 DGTTALKLYAFSDN--GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 139 ~~~~~~~~~~~SPD--G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
+++..++++.|+|. +..||-.+ ....+.+|++++...+.+.. ...+++.++|.|+|+.|.-.++|.
T Consensus 215 gH~~~v~~~~fhP~~~~~~lat~s-----~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~------ 283 (459)
T KOG0272|consen 215 GHTSRVGAAVFHPVDSDLNLATAS-----ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS------ 283 (459)
T ss_pred ccccceeeEEEccCCCccceeeec-----cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc------
Confidence 45567899999998 55666433 33468999998877665433 334668899999999999888754
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.=.+|++.++.. ++.++. +..-+.+++|.|||..++ .++-.+--.+||+.+|. .
T Consensus 284 ----------tWRlWD~~tk~E---lL~QEG-Hs~~v~~iaf~~DGSL~~----tGGlD~~~RvWDlRtgr--------~ 337 (459)
T KOG0272|consen 284 ----------TWRLWDLETKSE---LLLQEG-HSKGVFSIAFQPDGSLAA----TGGLDSLGRVWDLRTGR--------C 337 (459)
T ss_pred ----------chhhcccccchh---hHhhcc-cccccceeEecCCCceee----ccCccchhheeecccCc--------E
Confidence 234567776642 444443 344567899999999876 22222444678998842 2
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeC
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQN 373 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 373 (734)
...+-.+....+.+ |||+|-.++-- +.+...-+||+..... .-++|.. ...+..+.+. ..+.++++...|
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATg----s~Dnt~kVWDLR~r~~---ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATG----SSDNTCKVWDLRMRSE---LYTIPAH-SNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred EEEecccccceeeEeECCCceEEeec----CCCCcEEEeeeccccc---ceecccc-cchhhheEecccCCeEEEEcccC
Confidence 23343444555665 99999777632 2344577888876541 3344443 3445555544 357778877766
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFL 419 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~ 419 (734)
..+.+|+..+...++.|....+-|.++..++|+..+ ..+++.
T Consensus 410 --~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i--~t~s~D 451 (459)
T KOG0272|consen 410 --NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAI--ATSSFD 451 (459)
T ss_pred --cceeeecCCCcccchhhcCCccceEEEEeccCCceE--EEeccC
Confidence 467788877788888888888888888888887533 334444
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-07 Score=91.09 Aligned_cols=224 Identities=14% Similarity=0.163 Sum_probs=135.9
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+..+.|+|++++|+.... ...|++||+.+++.+.... .......+.|+|+++.|+....+
T Consensus 53 ~i~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------- 114 (289)
T cd00200 53 PVRDVAASADGTYLASGSS-----DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD------------- 114 (289)
T ss_pred ceeEEEECCCCCEEEEEcC-----CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCC-------------
Confidence 3568999999988887653 2479999999876433221 22234678999997644443312
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
..|+++++.+... ...+. ........+.|+|++++|+... ....|++||+.++. ....+..
T Consensus 115 ---~~i~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~----~~~~i~i~d~~~~~--------~~~~~~~ 175 (289)
T cd00200 115 ---KTIKVWDVETGKC--LTTLR--GHTDWVNSVAFSPDGTFVASSS----QDGTIKLWDLRTGK--------CVATLTG 175 (289)
T ss_pred ---CeEEEEECCCcEE--EEEec--cCCCcEEEEEEcCcCCEEEEEc----CCCcEEEEEccccc--------cceeEec
Confidence 2688888875431 12222 2233466789999988877532 22579999997621 1122222
Q ss_pred cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 302 GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 302 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
....... .|+++++.+++.+. +..|..+|+.++. ....+... ...+..+.+..++.+++....+ ..+++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~---~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~--~~i~i 245 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGK---CLGTLRGH-ENGVNSVAFSPDGYLLASGSED--GTIRV 245 (289)
T ss_pred CccccceEEECCCcCEEEEecC----CCcEEEEECCCCc---eecchhhc-CCceEEEEEcCCCcEEEEEcCC--CcEEE
Confidence 2212223 38899888877655 3458889987644 12222122 2244455555545666665534 47899
Q ss_pred EECCCCceeeeeCCCCceEEeeccCcccceEEE
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFY 413 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~ 413 (734)
|++.+++....+......+..+.+++++..++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred EEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 999777776777655556777888877655443
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=108.23 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=74.8
Q ss_pred CCCcEEEEecCCCCCcC----------CccccHHH---HHHHHhcCeEEEEEecccCCC--------CCchhhhcccc--
Q psy4818 486 RRNPVIIYGYGGYGVSV----------LPTFSISR---CMFLRHFNGIYAIPNIRGGGE--------LGEDWHNAGRL-- 542 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~----------~~~~~~~~---~~~l~~~G~~v~~~~~rG~~~--------~g~~~~~~~~~-- 542 (734)
.+.++||+.|+-.+.+. .++|-..+ ...++-.-|-|+++|+-|++. -|..-...+.+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 34689999998655321 12222111 123555579999999998753 12111111111
Q ss_pred ---ccCCCchhHHHHHHHHHHHcCCCCCCcEE-EEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 543 ---LKKQNCFDDFQAAAEYMINKKYTKPKYIT-IMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 543 ---~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.....+++|+.+++..|+++- .-+++. ++|+|+||++++.++.++|++++.+|+.+.
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 123467899988888877653 335675 999999999999999999999998887754
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-07 Score=100.21 Aligned_cols=242 Identities=14% Similarity=0.169 Sum_probs=145.0
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC--ccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK--DYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~--~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
..++....|||||+.++.+... ..+.++++.+++ .+... .....+..+.|||||+.|+-.+.|.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~-------- 225 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDK-------- 225 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCc--------
Confidence 3557779999999998876532 368888887666 33222 2222347899999999666555432
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
+|++|++.... ..+.....+..++..+.|+|+|+.|+ .. .....|++||+.++. ...
T Consensus 226 --------tiriwd~~~~~---~~~~~l~gH~~~v~~~~f~p~g~~i~-Sg---s~D~tvriWd~~~~~--------~~~ 282 (456)
T KOG0266|consen 226 --------TLRIWDLKDDG---RNLKTLKGHSTYVTSVAFSPDGNLLV-SG---SDDGTVRIWDVRTGE--------CVR 282 (456)
T ss_pred --------eEEEeeccCCC---eEEEEecCCCCceEEEEecCCCCEEE-Ee---cCCCcEEEEeccCCe--------EEE
Confidence 78889883221 12333335566788999999995554 33 333689999998832 233
Q ss_pred eeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc-eeEEEEEeeCCEEEEEEEeCCc
Q psy4818 298 TVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR-TLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 298 ~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
.+..+....... +++||..|+-.+ .++.|..||+.++... +...+...+.. .+..+.+..++..++....+
T Consensus 283 ~l~~hs~~is~~~f~~d~~~l~s~s----~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d-- 355 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGNLLVSAS----YDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD-- 355 (456)
T ss_pred eeeccCCceEEEEECCCCCEEEEcC----CCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCC--
Confidence 344443433333 888888766432 2456999999876511 11223333233 45555554434444444444
Q ss_pred eeEEEEECCCCceeeeeCCC-Cc--eEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 376 SVMDLHDLNTGKRLHSFPLD-LG--QITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~-~g--~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+.+|++..++..+..... .+ .+.....++.+ .++++.+. ...++.+|+
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~---d~~v~~~~~ 408 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSE---DGSVYVWDS 408 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCC-CeEEEEeC---CceEEEEeC
Confidence 47899999778776666544 22 23233334444 34333332 246888888
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=117.09 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=66.4
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
..||.+|....+-+ ...|+||++||..+... .|.. +...|. .||.|+++|+||.|.... . ....
T Consensus 9 ~~~g~~l~~~~~g~------~~~~~ivllHG~~~~~~--~w~~-~~~~L~-~~~~Vi~~D~~G~G~S~~---~---~~~~ 72 (582)
T PRK05855 9 SSDGVRLAVYEWGD------PDRPTVVLVHGYPDNHE--VWDG-VAPLLA-DRFRVVAYDVRGAGRSSA---P---KRTA 72 (582)
T ss_pred eeCCEEEEEEEcCC------CCCCeEEEEcCCCchHH--HHHH-HHHHhh-cceEEEEecCCCCCCCCC---C---Cccc
Confidence 45787776654321 23689999999865543 3443 345565 599999999999554321 1 1112
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCc-EEEEEcChHHHHHHHHHhc
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKY-ITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~ 588 (734)
..+++++...+..+++. ....+ +.|+|||+||.+++.++.+
T Consensus 73 ~~~~~~~a~dl~~~i~~--l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 73 AYTLARLADDFAAVIDA--VSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred ccCHHHHHHHHHHHHHH--hCCCCcEEEEecChHHHHHHHHHhC
Confidence 23455665555555543 12234 9999999999998877665
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-06 Score=94.18 Aligned_cols=260 Identities=17% Similarity=0.166 Sum_probs=157.4
Q ss_pred CcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCc------eE
Q psy4818 95 APQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSD------WN 168 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~------~~ 168 (734)
.++|+|.+++|....+|.+...|++++..+| +.+-|. +. ....+++.|++||+.+.|........ ..
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~--i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDG--IE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEE--EE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCc--cc---ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3458999999999998899999999998666 333321 10 01122499999999999998766544 68
Q ss_pred EEEEEECCCCCcc-----cccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCC---CCCCe
Q psy4818 169 TLHIKDVDTGKDY-----PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTE---QDKDI 240 (734)
Q Consensus 169 ~l~v~dl~~g~~~-----~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~---~~~~~ 240 (734)
+||.+.+.++..- ........+..+.+|+||++|+....... . ...+|+.++... ...-.
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-----------~-~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-----------S-ESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-----------S-EEEEEEEECCCTTTSS-SEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-----------c-CCeEEEEeccccCCCcCCcE
Confidence 9999999887532 11111111347889999999888776331 1 368999999875 22333
Q ss_pred eEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce-eeeccccc-eEEEEEecCCeEE
Q psy4818 241 PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK-TVIPGMDH-HHEIIANNGPELI 318 (734)
Q Consensus 241 ~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~l~~~~~~-~~~~~s~dg~~l~ 318 (734)
++....... ...+... |..+++.++.+.....|+.+++++.. ...+. .++..... ....++..+++|+
T Consensus 271 ~l~~~~~~~--~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~------~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 271 LLSPREDGV--EYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPS------PAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp EEEESSSS---EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTS------GGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred EEeCCCCce--EEEEEcc--CCEEEEeeCCCCCCcEEEEecccccc------cccceeEEcCCCCceeEEEEEEECCEEE
Confidence 444432222 2222222 66677777665555899999998821 11234 34433332 2334778888888
Q ss_pred EEeCCCCCCceEEEEecC-CCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeCC-ceeEEEEECCCCce
Q psy4818 319 VKTTKNAPKGKVVTINLN-NPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQNV-RSVMDLHDLNTGKR 388 (734)
Q Consensus 319 ~~s~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~l~~~dl~~g~~ 388 (734)
+....++ ..+|.++++. +.. ...+.... ...+..... .+.+.+.+..+.-. .+.+|.+|+++|+.
T Consensus 341 l~~~~~~-~~~l~v~~~~~~~~---~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 341 LSYRENG-SSRLRVYDLDDGKE---SREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEETT-EEEEEEEETT-TEE---EEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEECC-ccEEEEEECCCCcE---EeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 8777654 6689999998 433 12222222 233333321 23366777766544 45899999988875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=99.11 Aligned_cols=231 Identities=12% Similarity=0.068 Sum_probs=141.1
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcC--CcEEEEEEEecCCCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHD--HKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpD--g~~l~y~~~~~~~~~~~~~ 217 (734)
.-.+....||+|++.||-.+- + ..+.||...++..+....+.. ....+.|+|. +..++-.+.|.
T Consensus 175 ~rPis~~~fS~ds~~laT~sw-s----G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg-------- 241 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSW-S----GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADG-------- 241 (459)
T ss_pred CCcceeeEeecCCCeEEEeec-C----CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCC--------
Confidence 445788999999999995442 2 468899988886444333322 4578999998 45676666543
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.+.+|++.+.. ++-+...+..-+..++|.|+|++|+-.. ......+||+.++. . ..
T Consensus 242 --------tvklw~~~~e~----~l~~l~gH~~RVs~VafHPsG~~L~Tas----fD~tWRlWD~~tk~-E-------lL 297 (459)
T KOG0272|consen 242 --------TVKLWKLSQET----PLQDLEGHLARVSRVAFHPSGKFLGTAS----FDSTWRLWDLETKS-E-------LL 297 (459)
T ss_pred --------ceeeeccCCCc----chhhhhcchhhheeeeecCCCceeeecc----cccchhhcccccch-h-------hH
Confidence 46666665532 1222223334566799999999998433 23566789999831 1 11
Q ss_pred eeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 298 TVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 298 ~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
..-.+....+.. |.+||..+. .. +.+.-=.+||+.++. ...++.+. -..+-.+.|..+++.+++.+.| .
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~-tG---GlD~~~RvWDlRtgr---~im~L~gH-~k~I~~V~fsPNGy~lATgs~D--n 367 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAA-TG---GLDSLGRVWDLRTGR---CIMFLAGH-IKEILSVAFSPNGYHLATGSSD--N 367 (459)
T ss_pred hhcccccccceeEecCCCceee-cc---CccchhheeecccCc---EEEEeccc-ccceeeEeECCCceEEeecCCC--C
Confidence 111222233333 889988544 22 222223458988876 23344443 3334456666668888777666 5
Q ss_pred eEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecC
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSF 418 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~ 418 (734)
...+|||.-.+.+-.|+.....|+.+.++|..+.++++.+-.
T Consensus 368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 788999964445556665555677788888666676665433
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-06 Score=80.27 Aligned_cols=239 Identities=12% Similarity=0.089 Sum_probs=149.6
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC-----CCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-----GKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGT 213 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~-----g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~ 213 (734)
++.-+...+..+++.-+.++.++. ..+.+|++.. |.++....+.. .+...+-|+||...+-.+.|.
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrD----k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~---- 85 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRD----KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG---- 85 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccc----eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc----
Confidence 445577888888888888877654 5788888764 33333222222 346788999997555444332
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.+++|++.+++.. ..|.. +...+.++++|||.++|+ .+...+.|.+|+.-+.
T Consensus 86 ------------~lrlWDl~~g~~t--~~f~G--H~~dVlsva~s~dn~qiv----SGSrDkTiklwnt~g~-------- 137 (315)
T KOG0279|consen 86 ------------TLRLWDLATGEST--RRFVG--HTKDVLSVAFSTDNRQIV----SGSRDKTIKLWNTLGV-------- 137 (315)
T ss_pred ------------eEEEEEecCCcEE--EEEEe--cCCceEEEEecCCCceee----cCCCcceeeeeeeccc--------
Confidence 7999999988543 34443 233567899999999987 3333478889988761
Q ss_pred CCceeeeccccce--EEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEE
Q psy4818 294 FPLKTVIPGMDHH--HEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHY 370 (734)
Q Consensus 294 ~~~~~l~~~~~~~--~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 370 (734)
..-.+..+...+ ..+ |+|+....++++.. .+..|-+||+++-+ ...-..+. ...+..+.+..++.+..+.
T Consensus 138 -ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s--~DktvKvWnl~~~~---l~~~~~gh-~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 138 -CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS--WDKTVKVWNLRNCQ---LRTTFIGH-SGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred -EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc--CCceEEEEccCCcc---hhhccccc-cccEEEEEECCCCCEEecC
Confidence 111222222122 223 99997666666542 34558889998754 23333333 3455666666657888776
Q ss_pred EeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 371 IQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 371 ~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++ .++++||++.++.+..+.. ...|.+++++|.. +++.... -..+-++|+
T Consensus 211 gkd--g~~~LwdL~~~k~lysl~a-~~~v~sl~fspnr--ywL~~at---~~sIkIwdl 261 (315)
T KOG0279|consen 211 GKD--GEAMLWDLNEGKNLYSLEA-FDIVNSLCFSPNR--YWLCAAT---ATSIKIWDL 261 (315)
T ss_pred CCC--ceEEEEEccCCceeEeccC-CCeEeeEEecCCc--eeEeecc---CCceEEEec
Confidence 555 4899999988887666643 3456678888764 3332221 224778888
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=105.88 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc----------------cccC---
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR----------------LLKK--- 545 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~----------------~~~~--- 545 (734)
.++.|+|||.||..+.+.. |+..+ .-||++||+|++++.|-+.....-...... ....
T Consensus 97 ~~~~PvvIFSHGlgg~R~~--yS~~~-~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T PF03403_consen 97 PGKFPVVIFSHGLGGSRTS--YSAIC-GELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFD 173 (379)
T ss_dssp SS-EEEEEEE--TT--TTT--THHHH-HHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----
T ss_pred CCCCCEEEEeCCCCcchhh--HHHHH-HHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceecccccc
Confidence 3789999999998766553 45444 456778999999999965432211100000 0000
Q ss_pred -C-----------CchhHHHHHHHHHHH--c------------------CCCCCCcEEEEEcChHHHHHHHHHhcCCCce
Q psy4818 546 -Q-----------NCFDDFQAAAEYMIN--K------------------KYTKPKYITIMGGSNGGLLVGACLNQRPELY 593 (734)
Q Consensus 546 -~-----------~~~~D~~~~~~~l~~--~------------------~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~ 593 (734)
. .-..|+..+++.|.+ . +.+|.++|+++|||.||..++.++.+. ..|
T Consensus 174 ~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~ 252 (379)
T PF03403_consen 174 PEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRF 252 (379)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT-
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCc
Confidence 0 013556666666643 1 346788999999999999999998876 578
Q ss_pred eEEEEcCCc
Q psy4818 594 GAALILVGA 602 (734)
Q Consensus 594 ~a~v~~~~~ 602 (734)
+++|+.-|.
T Consensus 253 ~~~I~LD~W 261 (379)
T PF03403_consen 253 KAGILLDPW 261 (379)
T ss_dssp -EEEEES--
T ss_pred ceEEEeCCc
Confidence 999866553
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-08 Score=106.99 Aligned_cols=124 Identities=14% Similarity=0.030 Sum_probs=76.0
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc--HHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCch
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS--ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 549 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~ 549 (734)
+..+-|.|... ....+.||++||........... ..+..+|.++||.|+++|.||.|.....+ .......
T Consensus 174 ~eLi~Y~P~t~--~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~------~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTTE--TVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADK------TFDDYIR 245 (532)
T ss_pred EEEEEeCCCCC--cCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccC------ChhhhHH
Confidence 44555555431 12345567778864333222111 23567777789999999999955432211 1112334
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHH----HHhcC-CCceeEEEEcCCcchh
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA----CLNQR-PELYGAALILVGALDM 605 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~----~~~~~-p~~~~a~v~~~~~~d~ 605 (734)
+++.++++++.+. +..+++.++|+|+||.+++. ++... |+++++++..+..+|+
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 5677888888754 46678999999999998632 34444 7778888877665554
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-06 Score=79.42 Aligned_cols=229 Identities=14% Similarity=0.138 Sum_probs=136.3
Q ss_pred EEEeCCCCcCC-------CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCc
Q psy4818 128 EVFLDPNKLSK-------DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHK 200 (734)
Q Consensus 128 ~~l~d~~~~~~-------~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~ 200 (734)
..|+|.+.-.+ +++..+..+.|--||++++ .|+|..+++|||+..-...+.-.....+..+.-.|.-.
T Consensus 63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-----TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQt 137 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-----TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQT 137 (311)
T ss_pred eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-----ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcc
Confidence 34566654433 1234577899999999987 46677899999998743322222223335677778766
Q ss_pred EEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEE
Q psy4818 201 GFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYF 280 (734)
Q Consensus 201 ~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~ 280 (734)
.|+.... ...|++|++++..-...++ |++...+.++...|||++++-..+ ....|+|
T Consensus 138 eLis~dq----------------sg~irvWDl~~~~c~~~li---Pe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW 194 (311)
T KOG0315|consen 138 ELISGDQ----------------SGNIRVWDLGENSCTHELI---PEDDTSIQSLTVMPDGSMLAAANN----KGNCYVW 194 (311)
T ss_pred eEEeecC----------------CCcEEEEEccCCccccccC---CCCCcceeeEEEcCCCcEEEEecC----CccEEEE
Confidence 6654432 2269999999764333332 333456778999999999985432 3578999
Q ss_pred eCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEE
Q psy4818 281 DLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVA 359 (734)
Q Consensus 281 d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~ 359 (734)
++-+.. ..++-.|..++-........ .+|||+++|+-.+.+ ..++.++.++- ......+....+.+-.-.+
T Consensus 195 ~l~~~~--~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd----ktv~iwn~~~~--~kle~~l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 195 RLLNHQ--TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD----KTVKIWNTDDF--FKLELVLTGHQRWVWDCAF 266 (311)
T ss_pred EccCCC--ccccceEhhheecccceEEEEEECCCCcEEEeecCC----ceEEEEecCCc--eeeEEEeecCCceEEeeee
Confidence 987621 11111222222222222333 399999988755443 35777777653 1123344444333333333
Q ss_pred EeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC
Q psy4818 360 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD 395 (734)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~ 395 (734)
..+ +..+|+...+ ....+|++..|+.++.-...
T Consensus 267 S~d-g~YlvTassd--~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 267 SAD-GEYLVTASSD--HTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ccC-ccEEEecCCC--CceeecccccCceeeecCCc
Confidence 334 6666666665 56778899889877666543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.1e-07 Score=97.00 Aligned_cols=211 Identities=9% Similarity=-0.008 Sum_probs=118.2
Q ss_pred CcEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCc-------ccc-cccccccCeeEEEcCCcEEEEEEEecC
Q psy4818 140 GTTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKD-------YPE-VLKNVKFPSISWTHDHKGFFYNQYCDI 210 (734)
Q Consensus 140 ~~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~-------~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~ 210 (734)
+...+..+.||| |+++||-+.. ...|++||+.++.. +.. ......+..+.|+|++..++.+...
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~-----DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~-- 146 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASE-----DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA-- 146 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeC-----CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC--
Confidence 345688999999 8888875543 35799999976531 111 1111234678999997655554432
Q ss_pred CCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcc
Q psy4818 211 NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290 (734)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l 290 (734)
...|.+|++.++.. +..+. .+...+..+.|+|||+.|+... ....|.+||+.++.
T Consensus 147 -------------DgtVrIWDl~tg~~--~~~l~--~h~~~V~sla~spdG~lLatgs----~Dg~IrIwD~rsg~---- 201 (493)
T PTZ00421 147 -------------DMVVNVWDVERGKA--VEVIK--CHSDQITSLEWNLDGSLLCTTS----KDKKLNIIDPRDGT---- 201 (493)
T ss_pred -------------CCEEEEEECCCCeE--EEEEc--CCCCceEEEEEECCCCEEEEec----CCCEEEEEECCCCc----
Confidence 12689999987642 22222 2333567899999999887432 23689999998731
Q ss_pred cCCCCceeeeccccce--EEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEE
Q psy4818 291 SGKFPLKTVIPGMDHH--HEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIV 368 (734)
Q Consensus 291 ~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 368 (734)
....+....... ...|.+++..++........+..|.+||+.+... ............+....+..+..+++
T Consensus 202 ----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 202 ----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred ----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCCCCceEEEEEcCCCCEEE
Confidence 122222221111 2248888776654443323345699999875431 11122111111222222222244444
Q ss_pred EEEeCCceeEEEEECCCCcee
Q psy4818 369 HYIQNVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 369 ~~~~~~~~~l~~~dl~~g~~~ 389 (734)
.... +...|++|++.+++..
T Consensus 276 lggk-gDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 276 IGSK-GEGNIRCFELMNERLT 295 (493)
T ss_pred EEEe-CCCeEEEEEeeCCceE
Confidence 4332 2357999999777643
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-06 Score=82.75 Aligned_cols=244 Identities=11% Similarity=0.083 Sum_probs=146.3
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
++...+..+.||+|.|+|+=++ .. ..|-|||.-|..... .+.....+-.-++||.|+.|+-...+.
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaS-qD----GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN-------- 119 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSAS-QD----GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN-------- 119 (343)
T ss_pred ccccceeeeEecCCcCeEEeec-cC----CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc--------
Confidence 3345588999999999987443 33 359999987654322 233333446789999999888766543
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
...||...............+.+.+.+|.....|.+|+..|- + ......-+||+++|. ..
T Consensus 120 ------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT--~---SGD~TCalWDie~g~---------~~ 179 (343)
T KOG0286|consen 120 ------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILT--G---SGDMTCALWDIETGQ---------QT 179 (343)
T ss_pred ------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEe--c---CCCceEEEEEcccce---------EE
Confidence 235555443211211122223345666877788888776543 1 233688999999841 12
Q ss_pred eeeccccceEE-E-EEe-cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC
Q psy4818 298 TVIPGMDHHHE-I-IAN-NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 298 ~l~~~~~~~~~-~-~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
..+.+...+.. . ++| +++.++ . .+-+..-++||+..+. ...-++..+ .-+..+.+++++.-+++.++++
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFv-S---g~cD~~aklWD~R~~~---c~qtF~ghe-sDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFV-S---GGCDKSAKLWDVRSGQ---CVQTFEGHE-SDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEE-e---cccccceeeeeccCcc---eeEeecccc-cccceEEEccCCCeeeecCCCc
Confidence 23333333333 2 777 666554 2 2223447788987765 455555553 3445666665566677777775
Q ss_pred ceeEEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+||+....++.....+ ...|.++.++..|+-++.-|..++ ..++|.
T Consensus 252 --tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~----c~vWDt 302 (343)
T KOG0286|consen 252 --TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT----CNVWDT 302 (343)
T ss_pred --eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc----eeEeec
Confidence 4556688666665555433 445667777777765655566654 778886
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-06 Score=92.79 Aligned_cols=250 Identities=14% Similarity=0.087 Sum_probs=153.9
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc--ccccCeeE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK--NVKFPSIS 194 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~--~~~~~~~~ 194 (734)
+|+-+...+....|.+.+ ...+..+.|||+|++||..... ..+.+||++..+.++.... ..+++.++
T Consensus 199 vylW~~~s~~v~~l~~~~------~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFG------EELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKTRTLRGSHASRVGSLA 267 (484)
T ss_pred EEEEecCCCceEEeEecC------CCceEEEEECCCCCEEEEeecC-----CeEEEEehhhccccccccCCcCceeEEEe
Confidence 444444445555666654 2447899999999999987642 4799999988775543332 44568899
Q ss_pred EEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCC
Q psy4818 195 WTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQG 274 (734)
Q Consensus 195 wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 274 (734)
|. +. ++-+.. +...|..+++...+..-. . ...+..-+.++.|++||++++ ++...
T Consensus 268 W~--~~-~lssGs---------------r~~~I~~~dvR~~~~~~~-~--~~~H~qeVCgLkws~d~~~lA----SGgnD 322 (484)
T KOG0305|consen 268 WN--SS-VLSSGS---------------RDGKILNHDVRISQHVVS-T--LQGHRQEVCGLKWSPDGNQLA----SGGND 322 (484)
T ss_pred cc--Cc-eEEEec---------------CCCcEEEEEEecchhhhh-h--hhcccceeeeeEECCCCCeec----cCCCc
Confidence 96 32 332222 122466666655432111 1 122344567899999999998 44555
Q ss_pred ceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 353 (734)
+.+++||..+ ..+...+..+...... .|+|.-+-|+.... +..+..|..+|..++.. +..+ ....
T Consensus 323 N~~~Iwd~~~--------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG-Gs~D~~i~fwn~~~g~~--i~~v---dtgs 388 (484)
T KOG0305|consen 323 NVVFIWDGLS--------PEPKFTFTEHTAAVKALAWCPWQSGLLATGG-GSADRCIKFWNTNTGAR--IDSV---DTGS 388 (484)
T ss_pred cceEeccCCC--------ccccEEEeccceeeeEeeeCCCccCceEEcC-CCcccEEEEEEcCCCcE--eccc---ccCC
Confidence 8999999955 1233444444333333 38888776665543 34466799999887651 1111 2245
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEe
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~s 416 (734)
.+..+.|.....-+++.-.....+|.+|+..+-+.+..+..+...|..++.+||+..++....
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 567777765333333333334468888888776666677777666778899999877665443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-06 Score=86.08 Aligned_cols=240 Identities=17% Similarity=0.189 Sum_probs=125.8
Q ss_pred EeCCCCcEEEEEEe-----CCCCceEEEEEEECCCCCccccccc--------ccccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 148 AFSDNGKHFAYCLS-----KSGSDWNTLHIKDVDTGKDYPEVLK--------NVKFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 148 ~~SPDG~~la~~~~-----~~g~~~~~l~v~dl~~g~~~~~~~~--------~~~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
.+||||+.|+.+.. ..|.+...|-|+|+++++.+.+..- ......++.|||||+||....+.
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p----- 126 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP----- 126 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----
Confidence 49999999887765 1344445799999999986532221 11224789999999888765331
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeE-----EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLG-----LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK 289 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~-----~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 289 (734)
...|-++++.+...- .-...++....+ .....+.||+.+.+.....+. ... .+
T Consensus 127 ---------~~~V~VvD~~~~kvv--~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---~~~---~~----- 184 (352)
T TIGR02658 127 ---------SPAVGVVDLEGKAFV--RMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN---PKI---KP----- 184 (352)
T ss_pred ---------CCEEEEEECCCCcEE--EEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc---eEE---ee-----
Confidence 225777777665311 001111111000 011234555555443322111 110 00
Q ss_pred ccCCCCceeeecc-ccc--eEEEEEe-cCCeEEEEeCCCCCCceEEEEecCCCCC---CCceEeecCCC--C---ceeEE
Q psy4818 290 ISGKFPLKTVIPG-MDH--HHEIIAN-NGPELIVKTTKNAPKGKVVTINLNNPCE---KNWKTLIPEDE--N---RTLDV 357 (734)
Q Consensus 290 l~~~~~~~~l~~~-~~~--~~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~--~---~~~~~ 357 (734)
..++.. ... ..+.+++ || +.+|+++. +.|+.+|+.+.+. ..|..+..... . .-.+.
T Consensus 185 -------~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 185 -------TEVFHPEDEYLINHPAYSNKSG-RLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred -------eeeecCCccccccCCceEcCCC-cEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 011111 000 0012456 55 56666765 5699999755321 11222221110 1 11223
Q ss_pred EEEe-eCCEEEEEEEe-------CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 358 VAAV-ANNKLIVHYIQ-------NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 358 ~~~~-~~~~l~~~~~~-------~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+. +++++|+.... ++..+|.++|.++++.+..|..... ..++.+++|++-+++..+.. ...+..+|+
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyvtn~~--s~~VsViD~ 329 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-IDSINVSQDAKPLLYALSTG--DKTLYIFDA 329 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-eeeEEECCCCCeEEEEeCCC--CCcEEEEEC
Confidence 4444 44667764422 2225899999999998888875533 44778889998344443322 346899998
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2624|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=98.82 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=107.5
Q ss_pred CCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc---HHHHHHHHhcCeEEEEEeccc
Q psy4818 452 FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS---ISRCMFLRHFNGIYAIPNIRG 528 (734)
Q Consensus 452 ~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG 528 (734)
+...+|.+|...+++.||. |-..--.|... ++.|+|++.||-..++..+--+ ...+-.|+.+||-|..-|.||
T Consensus 41 i~~~gy~~E~h~V~T~DgY-iL~lhRIp~~~---~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 41 IEKYGYPVEEHEVTTEDGY-ILTLHRIPRGK---KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred HHHcCCceEEEEEEccCCe-EEEEeeecCCC---CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 4456788999999999997 44444445442 7899999999987776654332 224556788899999999999
Q ss_pred CCCCCchhhhcccc--------ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEE
Q psy4818 529 GGELGEDWHNAGRL--------LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE---LYGAAL 597 (734)
Q Consensus 529 ~~~~g~~~~~~~~~--------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v 597 (734)
..|++.-...... .+..-...|+-+.++++.+. +..+++..+|||.|+.....++..+|+ .++.++
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 5566442221110 12233457999999999875 677899999999999999999998887 578888
Q ss_pred EcCCcchh
Q psy4818 598 ILVGALDM 605 (734)
Q Consensus 598 ~~~~~~d~ 605 (734)
+.+|++-+
T Consensus 194 aLAP~~~~ 201 (403)
T KOG2624|consen 194 ALAPAAFP 201 (403)
T ss_pred eecchhhh
Confidence 88887633
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.3e-08 Score=95.87 Aligned_cols=217 Identities=16% Similarity=0.107 Sum_probs=82.9
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEeccc-CCCCCchhhhccccccCCCchhHHHHHHHHHHHcC--
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRG-GGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK-- 563 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG-~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-- 563 (734)
+.-+||++-|-...-..-.|....+..|...||.|+.+..+- -++||.. .-.++.+|+.++++||....
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~--------SL~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTS--------SLDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcc--------hhhhHHHHHHHHHHHHHHhhcc
Confidence 344788886644434444455667777876799999999986 3456622 12346899999999998873
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCC-----CceeEEEEcCCcchhccccccc-------------------------c
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRP-----ELYGAALILVGALDMLRFNKFT-------------------------I 613 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p-----~~~~a~v~~~~~~d~~~~~~~~-------------------------~ 613 (734)
.-..++|+|+|||-|.--++.++.... ....++|+++|+.|-....... +
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 236789999999999999999987542 4689999999998754322110 0
Q ss_pred Ccccccc--cCCCCCHHHHHHHHhCCcc----------------CCCCCCCCCccCCcEEEEecCCCCCCCChH-HHHHH
Q psy4818 614 AYYSESE--FGSPNNKTHFHNLLSYSPL----------------HNIKVPPNNTQYPATLVLTGDHDDRVPPLH-SYKFI 674 (734)
Q Consensus 614 ~~~~~~~--~g~~~~~~~~~~~~~~sp~----------------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~-~~~~~ 674 (734)
+..+... |+.|-.+. .++.-.+|- .... .+..| +|++.+.+|.-||.+. -.++.
T Consensus 184 p~~~~~~~~~~~PiTA~--Rf~SL~s~~gdDD~FSSDL~de~l~~tfG----~v~~p-lLvl~Sg~DEyvP~~vdk~~Ll 256 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAY--RFLSLASPGGDDDYFSSDLSDERLKKTFG----KVSKP-LLVLYSGKDEYVPPWVDKEALL 256 (303)
T ss_dssp ----GGTTT-SS---HH--HHHT-S-SSHHHHTHHHHHTT-HHHHTGG----G--S--EEEEEE--TT------------
T ss_pred eccccccccCCCcccHH--HHHhccCCCCcccccCCCCCHHHHHHHhc----cCCCc-eEEEecCCCceecccccccccc
Confidence 0000001 12222221 111112221 0111 14455 9999999999999874 56777
Q ss_pred HHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHH--hHHHHHHHHHHH
Q psy4818 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMK--SIEEMTDIYVFL 721 (734)
Q Consensus 675 ~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~~fl 721 (734)
++++.+.... -..-.-.+.||+.|........ +.....++..||
T Consensus 257 ~rw~~a~~~~---~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 257 ERWKAATNPK---IWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp -------------------------------------------------
T ss_pred cccccccccc---cccccccccccccccccccccccccccccccccccC
Confidence 8887762110 0112345779999998754432 123455566665
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-07 Score=86.92 Aligned_cols=146 Identities=15% Similarity=0.139 Sum_probs=88.8
Q ss_pred eEEeCCCCcEEEEEEeC----CCC---ceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 146 LYAFSDNGKHFAYCLSK----SGS---DWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~----~g~---~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
.+.|+|+|++|++.+.. ++. ....|+.++..+......... ...+..++|||+|+.|+.+...
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~--------- 80 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS--------- 80 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc---------
Confidence 58899999999998872 221 124788887766543222221 1124789999999999887632
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.+.++.++++... .++..+.. ....+.|||+|++|++.... ....+|.+||..+.. ..
T Consensus 81 -----~~~~v~lyd~~~~-----~i~~~~~~--~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~---------~i 138 (194)
T PF08662_consen 81 -----MPAKVTLYDVKGK-----KIFSFGTQ--PRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKK---------KI 138 (194)
T ss_pred -----CCcccEEEcCccc-----EeEeecCC--CceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCE---------Ee
Confidence 1225666666421 23333222 23468999999999986543 222579999998611 11
Q ss_pred eeeccccceEEEEEecCCeEEEEeC
Q psy4818 298 TVIPGMDHHHEIIANNGPELIVKTT 322 (734)
Q Consensus 298 ~l~~~~~~~~~~~s~dg~~l~~~s~ 322 (734)
............|||||++|+..+.
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEEe
Confidence 1111111122239999999887654
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-06 Score=90.88 Aligned_cols=237 Identities=13% Similarity=0.143 Sum_probs=150.4
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc-cccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~-~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+..++|+--|.+|||....- .+|-||+..+...+ .....-.+...+++||||+.|+-...|.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~kl----gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg------------ 372 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKL----GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG------------ 372 (893)
T ss_pred eeeEEEecccCCEEEEcCCcc----ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC------------
Confidence 355788889999999977643 47888887765532 2111112336899999999888776544
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
+|.+|+..++- ++.+-.++..-...+.|+.+|+.|+-.+.+ ..+..||+... ...+..+.
T Consensus 373 ----KVKvWn~~Sgf----C~vTFteHts~Vt~v~f~~~g~~llssSLD----GtVRAwDlkRY--------rNfRTft~ 432 (893)
T KOG0291|consen 373 ----KVKVWNTQSGF----CFVTFTEHTSGVTAVQFTARGNVLLSSSLD----GTVRAWDLKRY--------RNFRTFTS 432 (893)
T ss_pred ----cEEEEeccCce----EEEEeccCCCceEEEEEEecCCEEEEeecC----CeEEeeeeccc--------ceeeeecC
Confidence 67788765542 333322334456789999999998754433 46888898762 23344444
Q ss_pred cccceEEE--EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 302 GMDHHHEI--IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 302 ~~~~~~~~--~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
........ +.|.|. +++.... ..+.|++|++.++. ..+++.+.+. .+....+...+.++++.+-+ ..+.
T Consensus 433 P~p~QfscvavD~sGe-lV~AG~~--d~F~IfvWS~qTGq---llDiLsGHEg-PVs~l~f~~~~~~LaS~SWD--kTVR 503 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGE-LVCAGAQ--DSFEIFVWSVQTGQ---LLDILSGHEG-PVSGLSFSPDGSLLASGSWD--KTVR 503 (893)
T ss_pred CCceeeeEEEEcCCCC-EEEeecc--ceEEEEEEEeecCe---eeehhcCCCC-cceeeEEccccCeEEecccc--ceEE
Confidence 33333333 444465 4444443 36899999999987 5677776644 44444333335677777666 5788
Q ss_pred EEECCCC-ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 380 LHDLNTG-KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 380 ~~dl~~g-~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+||+-+. .....|... ..+.+++++|||+++.++..+ +++-.+|.
T Consensus 504 iW~if~s~~~vEtl~i~-sdvl~vsfrPdG~elaVaTld----gqItf~d~ 549 (893)
T KOG0291|consen 504 IWDIFSSSGTVETLEIR-SDVLAVSFRPDGKELAVATLD----GQITFFDI 549 (893)
T ss_pred EEEeeccCceeeeEeec-cceeEEEEcCCCCeEEEEEec----ceEEEEEh
Confidence 8887332 123455443 335578899999999887654 36777777
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-05 Score=83.91 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=124.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC-CCCcc--cccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD-TGKDY--PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~-~g~~~--~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
...+++||||++|+.+.... ..|.+++++ +|+.. ...........++++|||+.||.+...
T Consensus 37 ~~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------------ 100 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN------------ 100 (330)
T ss_pred CccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC------------
Confidence 34679999999886654322 357777775 45421 111111123578999999988766532
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc-eee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL-KTV 299 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-~~l 299 (734)
...|..+++.+.......+...+... ....+.++|||++|++... ..+.|+++|+++. ..+...... ...
T Consensus 101 ---~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~---~~~~v~v~d~~~~--g~l~~~~~~~~~~ 171 (330)
T PRK11028 101 ---ANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCL---KEDRIRLFTLSDD--GHLVAQEPAEVTT 171 (330)
T ss_pred ---CCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeC---CCCEEEEEEECCC--CcccccCCCceec
Confidence 22577777653221111111111111 1235689999999876442 2368999998761 122110000 111
Q ss_pred eccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCC--CCCCCceEe--ecCC---CCceeEEEEE-eeCCEEEEEEE
Q psy4818 300 IPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN--PCEKNWKTL--IPED---ENRTLDVVAA-VANNKLIVHYI 371 (734)
Q Consensus 300 ~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~--~~~~~~~~l--~~~~---~~~~~~~~~~-~~~~~l~~~~~ 371 (734)
..+.......|+|||+++|+.... ...|..++++. +....+..+ ++.. +... ..+.+ ++++.+|+. .
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~i~~~pdg~~lyv~-~ 246 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNEL---NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA-ADIHITPDGRHLYAC-D 246 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecC---CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc-eeEEECCCCCEEEEe-c
Confidence 122222333589999988775432 24577777753 221111111 1111 0111 12323 343455554 3
Q ss_pred eCCceeEEEEECCC-Cceee---eeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 372 QNVRSVMDLHDLNT-GKRLH---SFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 372 ~~~~~~l~~~dl~~-g~~~~---~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ +...|.+|++.. +..++ .+.... ....+.++++++.++++.... ..+.++++
T Consensus 247 ~-~~~~I~v~~i~~~~~~~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~---~~v~v~~~ 303 (330)
T PRK11028 247 R-TASLISVFSVSEDGSVLSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKS---HHISVYEI 303 (330)
T ss_pred C-CCCeEEEEEEeCCCCeEEEeEEEeccc-cCCceEECCCCCEEEEEEccC---CcEEEEEE
Confidence 3 234677777632 22222 222111 123566788998888765422 24555544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-07 Score=85.04 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=94.4
Q ss_pred CCcEEeCCeEEEEEE-c---CCCC---eeEEEEEeCCCCCeEEE-eCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCC
Q psy4818 94 SAPQRQENNYFYFHN-K---GLQN---HSILYVQRNLTGSTEVF-LDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGS 165 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~-~---~~~~---~~~l~~~~~~~g~~~~l-~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~ 165 (734)
-.|.+.|.++...-. + .++. ...||+.+..+.....+ ++. ...+..++|||+|+++|......
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-------~~~I~~~~WsP~g~~favi~g~~-- 81 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-------EGPIHDVAWSPNGNEFAVIYGSM-- 81 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-------CCceEEEEECcCCCEEEEEEccC--
Confidence 345678888776544 1 1121 24566665443332222 221 12388999999999998776322
Q ss_pred ceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 166 DWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 166 ~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
...+.++|+++..... ........+.|||+|+.|+...... ....|.++++.+.. .+...
T Consensus 82 -~~~v~lyd~~~~~i~~--~~~~~~n~i~wsP~G~~l~~~g~~n-------------~~G~l~~wd~~~~~----~i~~~ 141 (194)
T PF08662_consen 82 -PAKVTLYDVKGKKIFS--FGTQPRNTISWSPDGRFLVLAGFGN-------------LNGDLEFWDVRKKK----KISTF 141 (194)
T ss_pred -CcccEEEcCcccEeEe--ecCCCceEEEECCCCCEEEEEEccC-------------CCcEEEEEECCCCE----Eeecc
Confidence 2378899987333222 2222235799999999999987632 22368888887432 23222
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCC--CCceEEEEeCCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNT--QGSDLHYFDLHS 284 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~i~~~d~~~ 284 (734)
... ....+.|||||++++....... ..+.+.+|+..+
T Consensus 142 -~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 142 -EHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred -ccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 122 3467899999999997654211 124555565544
|
|
| >KOG2984|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-09 Score=93.82 Aligned_cols=210 Identities=17% Similarity=0.162 Sum_probs=119.8
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 569 (734)
.|+.+-|.-|+... .|.+...++....-+.++..|.|| ||.+--. .+...-+.-.+|..+|++-+.. ++-.+
T Consensus 44 ~iLlipGalGs~~t-Df~pql~~l~k~l~~TivawDPpG---YG~SrPP-~Rkf~~~ff~~Da~~avdLM~a---Lk~~~ 115 (277)
T KOG2984|consen 44 YILLIPGALGSYKT-DFPPQLLSLFKPLQVTIVAWDPPG---YGTSRPP-ERKFEVQFFMKDAEYAVDLMEA---LKLEP 115 (277)
T ss_pred eeEecccccccccc-cCCHHHHhcCCCCceEEEEECCCC---CCCCCCC-cccchHHHHHHhHHHHHHHHHH---hCCCC
Confidence 56666787666554 466666565544348999999999 7643111 1111111223566666666644 46678
Q ss_pred EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc--hhccccccc---cCccccc--------ccCCCCCHHHHH-HHHh
Q psy4818 570 ITIMGGSNGGLLVGACLNQRPELYGAALILVGAL--DMLRFNKFT---IAYYSES--------EFGSPNNKTHFH-NLLS 635 (734)
Q Consensus 570 i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~--d~~~~~~~~---~~~~~~~--------~~g~~~~~~~~~-~~~~ 635 (734)
+.|+|+|-||..++.+|+++++.+...|...+-. +-...+.+. .-..|.. -||...-+...+ +...
T Consensus 116 fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~ 195 (277)
T KOG2984|consen 116 FSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDV 195 (277)
T ss_pred eeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999998655444433321 111111000 0011211 122110011110 0000
Q ss_pred CCccC--------CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCch
Q psy4818 636 YSPLH--------NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL 707 (734)
Q Consensus 636 ~sp~~--------~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (734)
..-++ ....| .+++| +||+||..|+.|+-.++--+-..+.. .++.++|.++|.+.-..
T Consensus 196 v~qf~~~~dG~fCr~~lp--~vkcP-tli~hG~kDp~~~~~hv~fi~~~~~~-----------a~~~~~peGkHn~hLry 261 (277)
T KOG2984|consen 196 VDQFHSFCDGRFCRLVLP--QVKCP-TLIMHGGKDPFCGDPHVCFIPVLKSL-----------AKVEIHPEGKHNFHLRY 261 (277)
T ss_pred HHHHhhcCCCchHhhhcc--cccCC-eeEeeCCcCCCCCCCCccchhhhccc-----------ceEEEccCCCcceeeec
Confidence 01111 11122 28888 99999999999998886544433332 37888999999987543
Q ss_pred HHhHHHHHHHHHHHHH
Q psy4818 708 MKSIEEMTDIYVFLMK 723 (734)
Q Consensus 708 ~~~~~~~~~~~~fl~~ 723 (734)
. .+....+.+||.+
T Consensus 262 a--~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 262 A--KEFNKLVLDFLKS 275 (277)
T ss_pred h--HHHHHHHHHHHhc
Confidence 3 4667778888864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-05 Score=86.75 Aligned_cols=208 Identities=10% Similarity=0.028 Sum_probs=116.6
Q ss_pred CcEEEeeEEeCCC-CcEEEEEEeCCCCceEEEEEEECCCCCc-cc--------ccccccccCeeEEEcCCcEEEEEEEec
Q psy4818 140 GTTALKLYAFSDN-GKHFAYCLSKSGSDWNTLHIKDVDTGKD-YP--------EVLKNVKFPSISWTHDHKGFFYNQYCD 209 (734)
Q Consensus 140 ~~~~~~~~~~SPD-G~~la~~~~~~g~~~~~l~v~dl~~g~~-~~--------~~~~~~~~~~~~wSpDg~~l~y~~~~~ 209 (734)
+...+..++|||+ +++||-+. ....|++||+.++.. .. .......+..++|+|++..++.+...+
T Consensus 73 H~~~V~~lafsP~~~~lLASgS-----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGS-----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEe-----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 3446889999997 67666433 335799999976431 11 011112346889999998877654322
Q ss_pred CCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc
Q psy4818 210 INGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK 289 (734)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 289 (734)
..|.+|++.++.. +..+.. ...+.++.|+|||+.|+... ....|.+||+.++.
T Consensus 148 ---------------gtIrIWDl~tg~~--~~~i~~---~~~V~SlswspdG~lLat~s----~D~~IrIwD~Rsg~--- 200 (568)
T PTZ00420 148 ---------------SFVNIWDIENEKR--AFQINM---PKKLSSLKWNIKGNLLSGTC----VGKHMHIIDPRKQE--- 200 (568)
T ss_pred ---------------CeEEEEECCCCcE--EEEEec---CCcEEEEEECCCCCEEEEEe----cCCEEEEEECCCCc---
Confidence 2688999987642 122221 22467899999999887532 22579999998731
Q ss_pred ccCCCCceeeeccccc--eEEE----EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC
Q psy4818 290 ISGKFPLKTVIPGMDH--HHEI----IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN 363 (734)
Q Consensus 290 l~~~~~~~~l~~~~~~--~~~~----~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 363 (734)
....+..+... .... ++++++.|+-.+........|.+||+.+... ....+..+.....+......+.
T Consensus 201 -----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 201 -----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred -----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCC
Confidence 11222222111 1111 3477776665554333334699999875321 1222211111122222222333
Q ss_pred CEEEEEEEeCCceeEEEEECCCCc
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
+.++++...+ ..+++|++..+.
T Consensus 275 g~l~lsGkGD--~tIr~~e~~~~~ 296 (568)
T PTZ00420 275 GLIYLIGKGD--GNCRYYQHSLGS 296 (568)
T ss_pred CCEEEEEECC--CeEEEEEccCCc
Confidence 5666666544 578888886553
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-07 Score=110.83 Aligned_cols=233 Identities=10% Similarity=0.021 Sum_probs=126.9
Q ss_pred EeEEEEEeccccC--CCCCcEEEEecCCCCCcCCccccH--HHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 472 VPMYIIHRVGALR--NRRNPVIIYGYGGYGVSVLPTFSI--SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 472 i~~~~~~p~~~~~--~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+..+-|.|...+. ....|.||++||.......+...+ .+..+|.++||.|+++|+.. ... ... . ...
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G~-~~~-----~~~--~-~~~ 119 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFGS-PDK-----VEG--G-MER 119 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCCC-CCh-----hHc--C-ccC
Confidence 4455555543211 124478899999876665544332 23567777899999999622 111 100 0 112
Q ss_pred chhHH----HHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcchhccccccc----------
Q psy4818 548 CFDDF----QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGALDMLRFNKFT---------- 612 (734)
Q Consensus 548 ~~~D~----~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~d~~~~~~~~---------- 612 (734)
.+.|. .++++.+.+.. .+++.++|+|+||.+++.+++.+ +++++.+|+.+..+|+.......
T Consensus 120 ~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~ 196 (994)
T PRK07868 120 NLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAA 196 (994)
T ss_pred CHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhccc
Confidence 33333 33333333222 24799999999999998887644 55788887654443321100000
Q ss_pred -----------cCcccc---------------------cccCCCC---C---------------------HHHHHHHHhC
Q psy4818 613 -----------IAYYSE---------------------SEFGSPN---N---------------------KTHFHNLLSY 636 (734)
Q Consensus 613 -----------~~~~~~---------------------~~~g~~~---~---------------------~~~~~~~~~~ 636 (734)
.-+.|. ..+.++. + .+....+...
T Consensus 197 ~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~ 276 (994)
T PRK07868 197 DFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAH 276 (994)
T ss_pred ccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHh
Confidence 000000 0001100 0 0000111110
Q ss_pred -CccC----------CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEE-EEeCCCCCCCC
Q psy4818 637 -SPLH----------NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLL-RVEQDAGHGQG 704 (734)
Q Consensus 637 -sp~~----------~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~-~~~~~~gH~~~ 704 (734)
.... ++. +++.| +|+++|+.|..+|+..+..+.+.+... .+ .+.+++||...
T Consensus 277 n~~~~g~~~~~~~~~~L~----~i~~P-~L~i~G~~D~ivp~~~~~~l~~~i~~a-----------~~~~~~~~~GH~g~ 340 (994)
T PRK07868 277 NRMMTGGFAINGQMVTLA----DITCP-VLAFVGEVDDIGQPASVRGIRRAAPNA-----------EVYESLIRAGHFGL 340 (994)
T ss_pred CcccCceEEECCEEcchh----hCCCC-EEEEEeCCCCCCCHHHHHHHHHhCCCC-----------eEEEEeCCCCCEee
Confidence 0111 122 27788 999999999999999988887665332 33 56689999742
Q ss_pred -CchHHhHHHHHHHHHHHHHHcCCCCCCC
Q psy4818 705 -TPLMKSIEEMTDIYVFLMKSLGLKYYPD 732 (734)
Q Consensus 705 -~~~~~~~~~~~~~~~fl~~~l~~~~~~~ 732 (734)
.......+.+..+.+||.++=+....|+
T Consensus 341 ~~g~~a~~~~wp~i~~wl~~~~~~~~~~~ 369 (994)
T PRK07868 341 VVGSRAAQQTWPTVADWVKWLEGDGDKPE 369 (994)
T ss_pred eechhhhhhhChHHHHHHHHhccCCCCCc
Confidence 1112235778889999999876555553
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=100.16 Aligned_cols=78 Identities=22% Similarity=0.128 Sum_probs=61.5
Q ss_pred eEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEE
Q psy4818 519 GIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI 598 (734)
Q Consensus 519 ~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~ 598 (734)
|.|+++|.||.|..... ..........+|+.+.++.+.+.-- -+++.++|+|+||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALG--IKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHT--TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhC--CCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 67999999996643311 1123445568899999999888633 34599999999999999999999999999999
Q ss_pred cCCc
Q psy4818 599 LVGA 602 (734)
Q Consensus 599 ~~~~ 602 (734)
.+++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 8885
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=112.64 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=82.0
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCC---ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc--cC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL---PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL--KK 545 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~--~~ 545 (734)
-+..-|+.|+......+.||+||+|||...... ..+.. ..++++++.+||.+|||-|- +| |-...... .+
T Consensus 108 CL~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~--~~~~~~~~vivVt~nYRlg~-~G--fl~~~~~~~~~g 182 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDG--ASLAASKDVIVVTINYRLGA-FG--FLSLGDLDAPSG 182 (535)
T ss_dssp --EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHT--HHHHHHHTSEEEEE----HH-HH--H-BSSSTTSHBS
T ss_pred HHHHhhhhccccccccccceEEEeecccccCCCcccccccc--cccccCCCEEEEEecccccc-cc--cccccccccCch
Confidence 578899999987545579999999998433222 22222 34556679999999999642 22 11100000 12
Q ss_pred CCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCc
Q psy4818 546 QNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGA 602 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~ 602 (734)
-..+.|.+.|++|+.++ ---||++|-|+|+|+||..+..++.. ...+|+.+|+.+|.
T Consensus 183 N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 183 NYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp THHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 33578999999999876 12699999999999999999998764 23599999999883
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.1e-07 Score=86.87 Aligned_cols=244 Identities=15% Similarity=0.109 Sum_probs=142.6
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc---------ccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV---------KFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~---------~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
+....|||||++|+- |+-..-|-|||-.+|+...+..-.. .+--+.||.|+.-++-.+.+.
T Consensus 216 ~EcA~FSPDgqyLvs-----gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG----- 285 (508)
T KOG0275|consen 216 VECARFSPDGQYLVS-----GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG----- 285 (508)
T ss_pred hhheeeCCCCceEee-----ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC-----
Confidence 557899999999984 4444579999999998654432211 113456777777666555433
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
+|.+|++.+++-- .-|+. .+..-+..+.||.|+..|+- .+....+.+--+.+|+ +|
T Consensus 286 -----------kIKvWri~tG~Cl--RrFdr-AHtkGvt~l~FSrD~SqiLS----~sfD~tvRiHGlKSGK--~L---- 341 (508)
T KOG0275|consen 286 -----------KIKVWRIETGQCL--RRFDR-AHTKGVTCLSFSRDNSQILS----ASFDQTVRIHGLKSGK--CL---- 341 (508)
T ss_pred -----------cEEEEEEecchHH--HHhhh-hhccCeeEEEEccCcchhhc----ccccceEEEeccccch--hH----
Confidence 5777777776521 11221 22334567899999999872 2222445555555531 11
Q ss_pred CceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeC-CEEEEEEE
Q psy4818 295 PLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VAN-NKLIVHYI 371 (734)
Q Consensus 295 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~-~~l~~~~~ 371 (734)
.....+...... .+++||.+++-.+.. ..+-+|+.++.+. ....-+...+..+..+.+ +.+ .++++...
T Consensus 342 --KEfrGHsSyvn~a~ft~dG~~iisaSsD----gtvkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 342 --KEFRGHSSYVNEATFTDDGHHIISASSD----GTVKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred --HHhcCccccccceEEcCCCCeEEEecCC----ccEEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence 111111111111 389999988755443 4578888877652 122222222344444433 332 46666543
Q ss_pred eCCceeEEEEECCCCceeeeeCCC---CceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCcee
Q psy4818 372 QNVRSVMDLHDLNTGKRLHSFPLD---LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPT 442 (734)
Q Consensus 372 ~~~~~~l~~~dl~~g~~~~~l~~~---~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~ 442 (734)
. +.+|++++ .|..++.++.. -|.......+|.|..++...... .+|-+.. .+|+++.+
T Consensus 414 s---ntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~-----~sG~LE~t 474 (508)
T KOG0275|consen 414 S---NTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSV-----LSGKLERT 474 (508)
T ss_pred C---CeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEe-----ecCceeee
Confidence 3 47999999 79888888654 34444666788887776655443 5788887 56754443
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-06 Score=78.11 Aligned_cols=232 Identities=13% Similarity=0.155 Sum_probs=140.5
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
++.++....|+|-..-+.++.+.+ ..|++||...+++...+........+.|||||+++++...++
T Consensus 63 h~~svdql~w~~~~~d~~atas~d----k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD---------- 128 (313)
T KOG1407|consen 63 HTDSVDQLCWDPKHPDLFATASGD----KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD---------- 128 (313)
T ss_pred CCcchhhheeCCCCCcceEEecCC----ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc----------
Confidence 345677889999887666665422 579999999998765433322235789999999999987644
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|-.++..+-+. +.++ .-..+.....|+-++...+++.. .+.-+|.-|+ .. .++..+
T Consensus 129 ------~it~id~r~~~~----~~~~-~~~~e~ne~~w~~~nd~Fflt~G--lG~v~ILsyp--sL--------kpv~si 185 (313)
T KOG1407|consen 129 ------RITFIDARTYKI----VNEE-QFKFEVNEISWNNSNDLFFLTNG--LGCVEILSYP--SL--------KPVQSI 185 (313)
T ss_pred ------cEEEEEecccce----eehh-cccceeeeeeecCCCCEEEEecC--CceEEEEecc--cc--------cccccc
Confidence 344454443221 1111 11223346788866665544321 1212333333 21 123333
Q ss_pred eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeE
Q psy4818 300 IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378 (734)
Q Consensus 300 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 378 (734)
..+...-+.. ++|+|++|+.-+. +..+-+||++.-. +...++-. +..+..+.+.-+++++.+++++ .-|
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi---C~R~isRl-dwpVRTlSFS~dg~~lASaSED--h~I 255 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI---CERCISRL-DWPVRTLSFSHDGRMLASASED--HFI 255 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh---hheeeccc-cCceEEEEeccCcceeeccCcc--ceE
Confidence 3333334444 9999998886433 3457778886543 34444444 3556666666668888888777 356
Q ss_pred EEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCC
Q psy4818 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFL 419 (734)
Q Consensus 379 ~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~ 419 (734)
-+-+.++|..+.+|+-. +....+.+.|+..-|+|.++...
T Consensus 256 DIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred EeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecCCC
Confidence 66677899887777643 34447888998877777776544
|
|
| >KOG2112|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.2e-07 Score=81.94 Aligned_cols=187 Identities=20% Similarity=0.217 Sum_probs=117.5
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecc------cCCCCCchhhhcccccc-CCCchhHHHHH---HHH
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIR------GGGELGEDWHNAGRLLK-KQNCFDDFQAA---AEY 558 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~r------G~~~~g~~~~~~~~~~~-~~~~~~D~~~~---~~~ 558 (734)
-+||++||-..+... +. .++.-+.-.+.-.++|.-+ -+|..+..|.+...... ...+-+.+..+ +..
T Consensus 4 atIi~LHglGDsg~~--~~-~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSG--WA-QFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred EEEEEEecCCCCCcc--HH-HHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 479999996444433 22 2222244446666666322 14555667777533221 22233333333 334
Q ss_pred HHHc---CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHh
Q psy4818 559 MINK---KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLS 635 (734)
Q Consensus 559 l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 635 (734)
|+++ .-++++||+|.|.|+||.+++.++..+|....+++...++.--.. -+.|.
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~-------------~~~~~---------- 137 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS-------------IGLPG---------- 137 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch-------------hhccC----------
Confidence 4443 337899999999999999999999888655444444444432100 00000
Q ss_pred CCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHH
Q psy4818 636 YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMT 715 (734)
Q Consensus 636 ~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 715 (734)
... ..+++|++..||+.|+.||..=..+....|+.. +..++++.|++-+|.... ++..
T Consensus 138 ------~~~---~~~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~-------~~~~~f~~y~g~~h~~~~------~e~~ 195 (206)
T KOG2112|consen 138 ------WLP---GVNYTPILLCHGTADPLVPFRFGEKSAQFLKSL-------GVRVTFKPYPGLGHSTSP------QELD 195 (206)
T ss_pred ------Ccc---ccCcchhheecccCCceeehHHHHHHHHHHHHc-------CCceeeeecCCccccccH------HHHH
Confidence 000 022345999999999999999999999999998 888999999999997753 4455
Q ss_pred HHHHHHHH
Q psy4818 716 DIYVFLMK 723 (734)
Q Consensus 716 ~~~~fl~~ 723 (734)
++..|+.+
T Consensus 196 ~~~~~~~~ 203 (206)
T KOG2112|consen 196 DLKSWIKT 203 (206)
T ss_pred HHHHHHHH
Confidence 67788776
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-05 Score=84.74 Aligned_cols=241 Identities=8% Similarity=-0.028 Sum_probs=131.3
Q ss_pred EeCCCCcEEEEEEeC-CCCceEEEEEEECCCCCcccccc-cccccCeeEEEcC-CcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 148 AFSDNGKHFAYCLSK-SGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHD-HKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 148 ~~SPDG~~la~~~~~-~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpD-g~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.++..++++|+..+. +|+-...|.++++.....+.... ....+..++|+|+ +..|+-...+.
T Consensus 33 ~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dg--------------- 97 (568)
T PTZ00420 33 GIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDL--------------- 97 (568)
T ss_pred eEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCC---------------
Confidence 356668888887764 34445678888876554332211 1223468899997 55555444332
Q ss_pred cEEEEEECCCCCC--C----CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 225 QKIYYHVLGTEQD--K----DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 225 ~~l~~~~l~t~~~--~----~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|.+|++.+... . .+..+. .+...+..+.|+|++..++.+++. ...|.+||+.++. ....
T Consensus 98 -tIrIWDi~t~~~~~~~i~~p~~~L~--gH~~~V~sVaf~P~g~~iLaSgS~---DgtIrIWDl~tg~--------~~~~ 163 (568)
T PTZ00420 98 -TIRVWEIPHNDESVKEIKDPQCILK--GHKKKISIIDWNPMNYYIMCSSGF---DSFVNIWDIENEK--------RAFQ 163 (568)
T ss_pred -eEEEEECCCCCccccccccceEEee--cCCCcEEEEEECCCCCeEEEEEeC---CCeEEEEECCCCc--------EEEE
Confidence 688888865321 0 111222 223356789999999988765543 2579999998731 1111
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeE-EEEE---eeCCEEEEEEEeC
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLD-VVAA---VANNKLIVHYIQN 373 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~l~~~~~~~ 373 (734)
+ ......... |+++|+.|+..+. +..|.+||+.++.. ...+..+. ..... .+.. ..++..+++...+
T Consensus 164 i-~~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rsg~~--i~tl~gH~-g~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 164 I-NMPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRKQEI--ASSFHIHD-GGKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred E-ecCCcEEEEEECCCCCEEEEEec----CCEEEEEECCCCcE--EEEEeccc-CCceeEEEEeeeEcCCCCEEEEEEcC
Confidence 2 111222333 9999997754332 34699999987641 22332232 22211 1111 1223444444433
Q ss_pred C--ceeEEEEECCC-CceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 V--RSVMDLHDLNT-GKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~--~~~l~~~dl~~-g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. ..++.+||+.+ ++.+..+... .+.+ ....+++.+.++++.++.. .++.|++
T Consensus 236 ~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L-~p~~D~~tg~l~lsGkGD~---tIr~~e~ 292 (568)
T PTZ00420 236 KNNMREMKLWDLKNTTSALVTMSIDNASAPL-IPHYDESTGLIYLIGKGDG---NCRYYQH 292 (568)
T ss_pred CCCccEEEEEECCCCCCceEEEEecCCccce-EEeeeCCCCCEEEEEECCC---eEEEEEc
Confidence 3 24799999964 4444444333 2333 1233445556666655543 6777777
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-06 Score=85.11 Aligned_cols=227 Identities=14% Similarity=0.128 Sum_probs=125.9
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc----cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL----KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
-+..+++||||++.|-+..+ ..++++|=.+|+.+-... ....+.+++||||+++|+-++.+.
T Consensus 192 FV~~VRysPDG~~Fat~gsD-----gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk--------- 257 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSD-----GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK--------- 257 (603)
T ss_pred ceeeEEECCCCCeEEEecCC-----ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc---------
Confidence 47789999999998855432 479999999988543211 111346899999999999888654
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.+.+|++.+............-+. ...+.-|. .+..|.+ +-. ..|-+++.+.. . ...
T Consensus 258 -------t~KIWdVs~~slv~t~~~~~~v~d-qqvG~lWq-kd~lItV--Sl~---G~in~ln~~d~--------~-~~~ 314 (603)
T KOG0318|consen 258 -------TIKIWDVSTNSLVSTWPMGSTVED-QQVGCLWQ-KDHLITV--SLS---GTINYLNPSDP--------S-VLK 314 (603)
T ss_pred -------eEEEEEeeccceEEEeecCCchhc-eEEEEEEe-CCeEEEE--EcC---cEEEEecccCC--------C-hhh
Confidence 566777776543222222222112 44567787 3333332 221 35666777662 2 222
Q ss_pred eecccc-ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 299 VIPGMD-HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 299 l~~~~~-~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
++.+.. ..... .++|+++||-.+ ..+.|..|+..++.. ..+........+..+.....+.++-..-++
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~Sgs----yDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd--- 384 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGS----YDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASESGELFTIGWDD--- 384 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeec----cCceEEEEecCCccc---cccccccccceEEEEeecCCCcEEEEecCC---
Confidence 333333 33333 889997776322 245799999877652 334444334455555444424444444333
Q ss_pred eEEEEECCCCceee--eeCCCCceEEeeccCcccceEEEEEec
Q psy4818 377 VMDLHDLNTGKRLH--SFPLDLGQITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 377 ~l~~~dl~~g~~~~--~l~~~~g~v~~~~~~~d~~~l~~~~ss 417 (734)
.|.+.++..+.... .+.++.. --+++...++..+++++-+
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg~Q-P~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLGSQ-PKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred eEEEEecccCcccccceeecCCC-ceeEEEcCCCCEEEEEecC
Confidence 57777774332111 1222211 1144455566566666654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.8e-06 Score=85.49 Aligned_cols=249 Identities=17% Similarity=0.152 Sum_probs=122.8
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
....+||||+++.. .+++| .|.++|+.+++.+.....+....++++|+||++++..... +
T Consensus 40 ~~~~~s~Dgr~~yv-~~rdg----~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~---------------~ 99 (369)
T PF02239_consen 40 AGLKFSPDGRYLYV-ANRDG----TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE---------------P 99 (369)
T ss_dssp EEEE-TT-SSEEEE-EETTS----EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE---------------T
T ss_pred eEEEecCCCCEEEE-EcCCC----eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC---------------C
Confidence 45789999998655 45443 5999999999866543333334689999999988766543 2
Q ss_pred cEEEEEECCCCCCCCeeEE-ecCC--CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce-eee
Q psy4818 225 QKIYYHVLGTEQDKDIPVV-EFPN--GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK-TVI 300 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~-~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~l~ 300 (734)
..+.+++..+.+.-...-. ..+. ......++.-||++...++... +..+||++|..+. .++. ..+
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk---d~~~I~vVdy~d~--------~~~~~~~i 168 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK---DTGEIWVVDYSDP--------KNLKVTTI 168 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET---TTTEEEEEETTTS--------SCEEEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc---cCCeEEEEEeccc--------cccceeee
Confidence 3677777665432111000 0000 0113345667888886665543 2368999998772 1111 111
Q ss_pred c-cccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCC---------------------CC---ce---------Ee
Q psy4818 301 P-GMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCE---------------------KN---WK---------TL 346 (734)
Q Consensus 301 ~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------------------~~---~~---------~l 346 (734)
. +.......|+|+|++++...+.. .+|..+|.++.+. .. |. .+
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred cccccccccccCcccceeeeccccc---ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 1 11111224899998877654431 1344444433210 00 00 01
Q ss_pred ecCC--------CCceeEEEE----------EeeCCEEEEEEE-eCCceeEEEEECCCCceeeeeCCCCc-eEEeeccCc
Q psy4818 347 IPED--------ENRTLDVVA----------AVANNKLIVHYI-QNVRSVMDLHDLNTGKRLHSFPLDLG-QITHISGRR 406 (734)
Q Consensus 347 ~~~~--------~~~~~~~~~----------~~~~~~l~~~~~-~~~~~~l~~~dl~~g~~~~~l~~~~g-~v~~~~~~~ 406 (734)
+..+ .+.++..+. .+++.++++... ......|.++|.++-+....+....+ .+..+.+++
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred ccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 1100 011111111 123234444311 12245788899877766555543222 245788899
Q ss_pred ccceEEEEEecCCCCceEEEEeC
Q psy4818 407 KYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 407 d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
||++++++.-... ..+.+||.
T Consensus 326 dG~~v~vS~~~~~--~~i~v~D~ 346 (369)
T PF02239_consen 326 DGKEVWVSVWDGN--GAIVVYDA 346 (369)
T ss_dssp TSSEEEEEEE--T--TEEEEEET
T ss_pred CCCEEEEEEecCC--CEEEEEEC
Confidence 9999998754433 38999998
|
... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-05 Score=85.36 Aligned_cols=240 Identities=13% Similarity=0.070 Sum_probs=127.9
Q ss_pred EeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc---ccc-cccccCeeEEEc-CCcEEEEEEEecCCCCCCCCccccc
Q psy4818 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP---EVL-KNVKFPSISWTH-DHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 148 ~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~---~~~-~~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
-++++++++|+..+..|. ...+...+.|+... ... ....+..+.|+| |++.|+..+.+.
T Consensus 35 ~~~~n~~~~a~~w~~~gg---~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg------------- 98 (493)
T PTZ00421 35 TIACNDRFIAVPWQQLGS---TAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG------------- 98 (493)
T ss_pred cEeECCceEEEEEecCCc---eEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC-------------
Confidence 367778888888776554 12233334455321 111 112346899999 888776665433
Q ss_pred CCcEEEEEECCCCCC-----CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 223 MGQKIYYHVLGTEQD-----KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~-----~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|.+|++.+... ..+..+. .+...+..+.|+|++..++++.+. ...|.+||+.++. ...
T Consensus 99 ---tIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~---DgtVrIWDl~tg~--------~~~ 162 (493)
T PTZ00421 99 ---TIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGA---DMVVNVWDVERGK--------AVE 162 (493)
T ss_pred ---EEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeC---CCEEEEEECCCCe--------EEE
Confidence 688888865421 1112222 233456679999997654444432 2679999998731 122
Q ss_pred eeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEe-CC
Q psy4818 298 TVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQ-NV 374 (734)
Q Consensus 298 ~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~ 374 (734)
.+.......... |+++|+.|+..+. +..|.+||+.++.. ...+..+. ........+ .+++.++..... ..
T Consensus 163 ~l~~h~~~V~sla~spdG~lLatgs~----Dg~IrIwD~rsg~~--v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 163 VIKCHSDQITSLEWNLDGSLLCTTSK----DKKLNIIDPRDGTI--VSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred EEcCCCCceEEEEEECCCCEEEEecC----CCEEEEEECCCCcE--EEEEecCC-CCcceEEEEcCCCCeEEEEecCCCC
Confidence 222222233333 9999987664332 35689999977541 23333332 222222223 333344333221 22
Q ss_pred ceeEEEEECCCCc-eeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 375 RSVMDLHDLNTGK-RLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 375 ~~~l~~~dl~~g~-~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...|.+||+.+.. ....+... ...+....++++++.+++...+. ..+..||+
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD---g~Iriwdl 289 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE---GNIRCFEL 289 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC---CeEEEEEe
Confidence 3579999996543 22223222 22233344567776665543322 36888888
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.6e-07 Score=98.86 Aligned_cols=242 Identities=15% Similarity=0.130 Sum_probs=131.7
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC----------C-Ccc--------cccccccccCeeEEEcCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT----------G-KDY--------PEVLKNVKFPSISWTHDHK 200 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~----------g-~~~--------~~~~~~~~~~~~~wSpDg~ 200 (734)
+...+..+.|||||++||..+ +...|.||..+. | ..- .......++..+.||||++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGS-----DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGS-----DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ccCceeEEEECCCCCeEeecc-----CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 445678899999999999654 446677777652 1 100 0111223457899999999
Q ss_pred EEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEE
Q psy4818 201 GFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYF 280 (734)
Q Consensus 201 ~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~ 280 (734)
.|+-...+. .|.+|+..+- +.+.++. ++...+-++.|.|-|+|++-.+ +...|.+|
T Consensus 143 ~lvS~s~Dn----------------sViiwn~~tF--~~~~vl~--~H~s~VKGvs~DP~Gky~ASqs----dDrtikvw 198 (942)
T KOG0973|consen 143 LLVSVSLDN----------------SVIIWNAKTF--ELLKVLR--GHQSLVKGVSWDPIGKYFASQS----DDRTLKVW 198 (942)
T ss_pred EEEEecccc----------------eEEEEccccc--eeeeeee--cccccccceEECCccCeeeeec----CCceEEEE
Confidence 888877654 5777776655 2233333 3444667899999999999543 23567777
Q ss_pred eCCCCCCCcccCCCCceeee-ccccc-----eE-E-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCC
Q psy4818 281 DLHSLPDGKISGKFPLKTVI-PGMDH-----HH-E-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDEN 352 (734)
Q Consensus 281 d~~~~~~~~l~~~~~~~~l~-~~~~~-----~~-~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 352 (734)
+..+ ......+ ..++. .+ . .|||||++|.....-+++...+-.++-.+=+ .-..++.+...
T Consensus 199 rt~d---------w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p 267 (942)
T KOG0973|consen 199 RTSD---------WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAP 267 (942)
T ss_pred Eccc---------ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce--eeeeeecCCCc
Confidence 7544 1112222 12211 11 1 2999999887654444444445555542210 00245544422
Q ss_pred ceeEEEEE-----eeCCE------------EEEEEEeCCceeEEEEECCCCceeeeeC-CCCceEEeeccCcccceEEEE
Q psy4818 353 RTLDVVAA-----VANNK------------LIVHYIQNVRSVMDLHDLNTGKRLHSFP-LDLGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 353 ~~~~~~~~-----~~~~~------------l~~~~~~~~~~~l~~~dl~~g~~~~~l~-~~~g~v~~~~~~~d~~~l~~~ 414 (734)
++-+.+ -++.. ++....+| ..|.+|....-+.+-.+. .-.-+|..++|++||-.++ .
T Consensus 268 --~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD--rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lf-a 342 (942)
T KOG0973|consen 268 --VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD--RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLF-A 342 (942)
T ss_pred --eEEEEeChHHhccccccCCccCCCcceEEEEEecCC--ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEE-E
Confidence 121111 01011 34444444 468888652222211111 1145677899999985544 3
Q ss_pred EecCCCCceEEEEeC
Q psy4818 415 FTSFLQPGTIYHCNI 429 (734)
Q Consensus 415 ~ss~~~P~~~~~~d~ 429 (734)
+|-. +.++.+..
T Consensus 343 cS~D---GtV~~i~F 354 (942)
T KOG0973|consen 343 CSLD---GTVALIHF 354 (942)
T ss_pred EecC---CeEEEEEc
Confidence 3322 35666665
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.66 E-value=5e-07 Score=83.91 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=92.9
Q ss_pred EEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcE
Q psy4818 491 IIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYI 570 (734)
Q Consensus 491 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 570 (734)
|+.+||-.++. ...|.+-+..-|... +.|-.++. ..-..++.+..++.-+.. +| +.+
T Consensus 1 v~IvhG~~~s~-~~HW~~wl~~~l~~~-~~V~~~~~------------------~~P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSP-PDHWQPWLERQLENS-VRVEQPDW------------------DNPDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--TTSST-TTSTHHHHHHHHTTS-EEEEEC--------------------TS--HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCCCCCC-ccHHHHHHHHhCCCC-eEEecccc------------------CCCCHHHHHHHHHHHHhh--cC-CCe
Confidence 45667743333 356776666666654 66665553 112344555555444332 33 359
Q ss_pred EEEEcChHHHHHHHHH-hcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCc
Q psy4818 571 TIMGGSNGGLLVGACL-NQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNT 649 (734)
Q Consensus 571 ~i~G~S~GG~~~~~~~-~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~ 649 (734)
.++|||.|+.+++..+ .+....++++++.+|+-.-.... ...+. ..+.+..... .
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~-------~~~~~------------~~f~~~p~~~-----l 113 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEP-------FPPEL------------DGFTPLPRDP-----L 113 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHC-------CTCGG------------CCCTTSHCCH-----H
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccc-------hhhhc------------cccccCcccc-----c
Confidence 9999999999999999 77777899999999985310000 00000 0111111111 3
Q ss_pred cCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCch
Q psy4818 650 QYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL 707 (734)
Q Consensus 650 ~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (734)
..| .+++.+++|+.||+..+.+++++|.. +++..+++||......
T Consensus 114 ~~~-~~viaS~nDp~vp~~~a~~~A~~l~a------------~~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 114 PFP-SIVIASDNDPYVPFERAQRLAQRLGA------------ELIILGGGGHFNAASG 158 (171)
T ss_dssp HCC-EEEEEETTBSSS-HHHHHHHHHHHT-------------EEEEETS-TTSSGGGT
T ss_pred CCC-eEEEEcCCCCccCHHHHHHHHHHcCC------------CeEECCCCCCcccccC
Confidence 445 58899999999999999999999854 4788899999876543
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-07 Score=84.98 Aligned_cols=236 Identities=15% Similarity=0.073 Sum_probs=131.3
Q ss_pred EEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc
Q psy4818 462 VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 462 ~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
..++..||..+++..+... ++.+-.+.+-|+++.. ..|-..+++.++++||.|+..||||.|+.-..-.....
T Consensus 8 ~~l~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv~--~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~ 80 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPAD-----GKASGRLVVAGATGVG--QYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQ 80 (281)
T ss_pred cccccCCCccCccccccCC-----CCCCCcEEecccCCcc--hhHhHHHHHHhhccCceEEEEecccccCCCccccccCc
Confidence 5577889999998877543 3444344445655543 34445577888899999999999997765432111111
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC--Ccchhccc-c------ccc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV--GALDMLRF-N------KFT 612 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~--~~~d~~~~-~------~~~ 612 (734)
-........|+.++++++.+.. ....+..+|||+||.+...+. ++|..-.+.|..+ ++.-+... . ...
T Consensus 81 ~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~k~~a~~vfG~gagwsg~m~~~~~l~~~~l~~ 157 (281)
T COG4757 81 WRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHPKYAAFAVFGSGAGWSGWMGLRERLGAVLLWN 157 (281)
T ss_pred cchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCcccceeeEeccccccccchhhhhcccceeecc
Confidence 1122334578889999987742 223588999999999887665 4563222223222 21111100 0 000
Q ss_pred c----Ccccccc-----cCCCC-CH----HHHHHHHhCCccCC----------CCCCCCCccCCcEEEEecCCCCCCCCh
Q psy4818 613 I----AYYSESE-----FGSPN-NK----THFHNLLSYSPLHN----------IKVPPNNTQYPATLVLTGDHDDRVPPL 668 (734)
Q Consensus 613 ~----~~~~~~~-----~g~~~-~~----~~~~~~~~~sp~~~----------~~~p~~~~~~P~~Li~~g~~D~~v~~~ 668 (734)
+ -..|... .|..+ .+ .+...+-+..-+.. +-. .+++| +..+....|+.+|+.
T Consensus 158 lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~ya---aVrtP-i~~~~~~DD~w~P~A 233 (281)
T COG4757 158 LVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYA---AVRTP-ITFSRALDDPWAPPA 233 (281)
T ss_pred ccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHH---HhcCc-eeeeccCCCCcCCHH
Confidence 0 0012111 12221 11 11222222211111 001 26777 999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcEEEEEeCCC----CCCCCCchHHhHHHHHHHHHHH
Q psy4818 669 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDA----GHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 669 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~~fl 721 (734)
...++.....++ |++++.++.+ ||...-... ..-.+.+++.||
T Consensus 234 s~d~f~~~y~nA---------pl~~~~~~~~~~~lGH~gyfR~~-~Ealwk~~L~w~ 280 (281)
T COG4757 234 SRDAFASFYRNA---------PLEMRDLPRAEGPLGHMGYFREP-FEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHhhhcC---------cccceecCcccCcccchhhhccc-hHHHHHHHHHhh
Confidence 888888877755 7777777765 786431111 023344556665
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-06 Score=95.88 Aligned_cols=172 Identities=11% Similarity=0.086 Sum_probs=104.2
Q ss_pred EEeeEEeCCCCcEEEEEEeC---CCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSK---SGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~---~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.++++++||||+++||.... .++....||+.+.. |...+.+.+.. ...+.|||||+.|+|......-. ...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~----~v~ 424 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVV----RVI 424 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCC-CCCceECCCCCceEEEecCcceE----EEe
Confidence 46789999999999999842 12245799999974 43333333332 47899999999999987421100 000
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEE---EeCCCCCCCcccCCCCc
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHY---FDLHSLPDGKISGKFPL 296 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~---~d~~~~~~~~l~~~~~~ 296 (734)
......++|++.++++.... .. ..-+..+.|||||++|+|... .+||+ ...++|. ..|+ ..
T Consensus 425 ~~~~~gql~~~~vd~ge~~~----~~---~g~Issl~wSpDG~RiA~i~~-----g~v~Va~Vvr~~~G~-~~l~---~~ 488 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS----RV---PGPISELQLSRDGVRAAMIIG-----GKVYLAVVEQTEDGQ-YALT---NP 488 (591)
T ss_pred ccCCCceEEEEeccCchhhh----cc---CCCcCeEEECCCCCEEEEEEC-----CEEEEEEEEeCCCCc-eeec---cc
Confidence 01123478877777654321 11 112467899999999999872 37887 4544432 2231 22
Q ss_pred eeeeccccce-EE-EEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 297 KTVIPGMDHH-HE-IIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 297 ~~l~~~~~~~-~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
+.+....... .. .|..++. |++.+. +....++.+++++..
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~--~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDS-LVVGRS--DPEHPVWYVNLDGSN 530 (591)
T ss_pred EEeecccCCccccceEecCCE-EEEEec--CCCCceEEEecCCcc
Confidence 3343333221 22 3888766 666654 234569999998754
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=95.47 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=78.6
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHH-HHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRC-MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
+...|++|++||..+... ..|...+. .++.+.++.|+++|+++++... +..+. ..-...-+++...+++|.++.
T Consensus 33 ~~~~p~vilIHG~~~~~~-~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~--~~~~~v~~~la~~l~~L~~~~ 107 (275)
T cd00707 33 NPSRPTRFIIHGWTSSGE-ESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV--NNTRVVGAELAKFLDFLVDNT 107 (275)
T ss_pred CCCCCcEEEEcCCCCCCC-CcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHH--HhHHHHHHHHHHHHHHHHHhc
Confidence 355789999999765442 23433333 3555568999999999853211 11110 001112346777888887765
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
..+.+++.++|||+||.+++.++.+.|++++.++...|..
T Consensus 108 g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 108 GLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 5678899999999999999999999999889999877653
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-06 Score=81.27 Aligned_cols=266 Identities=15% Similarity=0.149 Sum_probs=132.8
Q ss_pred eCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC-----cccccccccccCeeEEEcCCcEEEEE
Q psy4818 131 LDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK-----DYPEVLKNVKFPSISWTHDHKGFFYN 205 (734)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~-----~~~~~~~~~~~~~~~wSpDg~~l~y~ 205 (734)
++.+.| +++...+..+.||.||++||-...+ ..|++|++..=+ .++...+-.....++|+||-+.|++.
T Consensus 77 l~~~~L-KgH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 77 LNVSVL-KGHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhhhh-hccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 344455 3455668999999999999977642 479999987521 22222221123567888888887776
Q ss_pred EEecCC-------CCCCCCcc------c---ccCCcEEEEEECCCCC----------CCCeeEEecCC--------CCee
Q psy4818 206 QYCDIN-------GTADGTET------T---AHMGQKIYYHVLGTEQ----------DKDIPVVEFPN--------GRSL 251 (734)
Q Consensus 206 ~~~~~~-------~~~~~~~~------~---~~~~~~l~~~~l~t~~----------~~~~~v~~~~~--------~~~~ 251 (734)
-..+.. ..++|..+ | ..+-+++-.+++|+.. ..+++++.... +...
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~ 230 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSS 230 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccccc
Confidence 543211 01122211 1 1111233333333221 12334443321 1112
Q ss_pred EEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceE
Q psy4818 252 GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKV 330 (734)
Q Consensus 252 ~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l 330 (734)
....+.|||||+|+... ...++.+|..-=+....+++-...-.|..+...... .||++..+++-++.. + ..+|
T Consensus 231 n~~aavSP~GRFia~~g----FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD-G-~wri 304 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSG----FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD-G-KWRI 304 (420)
T ss_pred ccceeeCCCCcEEEEec----CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC-C-cEEE
Confidence 34678999999998542 335677776421122222221222223222222222 388888887766543 2 3456
Q ss_pred EEEecCCCCCCCceEeecC------CCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCC-CCceEEeec
Q psy4818 331 VTINLNNPCEKNWKTLIPE------DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHIS 403 (734)
Q Consensus 331 ~~~d~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~-~~g~v~~~~ 403 (734)
+-.|+.=...+..+.|-.. .....+.-...+.++.+.++.. +.|.++..++|+....+.. ..+.|++++
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g----s~l~~~~se~g~~~~~~e~~h~~~Is~is 380 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG----SDLKVFASEDGKDYPELEDIHSTTISSIS 380 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC----CceEEEEcccCccchhHHHhhcCceeeEE
Confidence 5555431110011111111 0112222222344333433322 4588888888876544433 256788999
Q ss_pred cCcccceEE
Q psy4818 404 GRRKYNEVF 412 (734)
Q Consensus 404 ~~~d~~~l~ 412 (734)
++++|+.++
T Consensus 381 ~~~~g~~~a 389 (420)
T KOG2096|consen 381 YSSDGKYIA 389 (420)
T ss_pred ecCCCcEEe
Confidence 999886554
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-05 Score=87.94 Aligned_cols=260 Identities=10% Similarity=0.024 Sum_probs=147.8
Q ss_pred CcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC-CceEEEEEE
Q psy4818 95 APQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG-SDWNTLHIK 173 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g-~~~~~l~v~ 173 (734)
.++++|.+++|....+|.+...|++++..+|. .|.+ .+.. .. ..++|++||+.|.|+....+ ....+||..
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~--~i~~---~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPE--LLDN---VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCc--cccC---cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 44689999999999988999999999876553 1211 1110 11 35899999999999987543 234789999
Q ss_pred ECCCCC--cccc-cccccccCeeEEEc-CCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCC
Q psy4818 174 DVDTGK--DYPE-VLKNVKFPSISWTH-DHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGR 249 (734)
Q Consensus 174 dl~~g~--~~~~-~~~~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~ 249 (734)
++.++. .... ......+.-..|.+ |+++++...... ....+++++......+...+.....+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-------------TTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-------------ccccEEEEECcCCCCCceEEEECCCCC
Confidence 999983 1111 11111112234555 999887554322 223567666432222223333333223
Q ss_pred eeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc-ceEEEEEecCCeEEEEeCCCCCCc
Q psy4818 250 SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD-HHHEIIANNGPELIVKTTKNAPKG 328 (734)
Q Consensus 250 ~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~ 328 (734)
.+ .+ ...+..+++..+.+.....|..+++.+ + ..|..++.... .....+...++.|++..+.++ ..
T Consensus 272 ~~--~~--~~~~~~ly~~tn~~~~~~~l~~~~~~~-~-------~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g-~~ 338 (686)
T PRK10115 272 EY--SL--DHYQHRFYLRSNRHGKNFGLYRTRVRD-E-------QQWEELIPPRENIMLEGFTLFTDWLVVEERQRG-LT 338 (686)
T ss_pred EE--EE--EeCCCEEEEEEcCCCCCceEEEecCCC-c-------ccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC-EE
Confidence 22 12 123466666665544557788888764 1 34666666532 233334445778888777654 55
Q ss_pred eEEEEecCCCCCCCceEeecCCCCceeEEEEE---eeCCEEEEEEEeC-CceeEEEEECCCCceeeeeC
Q psy4818 329 KVVTINLNNPCEKNWKTLIPEDENRTLDVVAA---VANNKLIVHYIQN-VRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 329 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~l~~~dl~~g~~~~~l~ 393 (734)
+|+.+++.++. ...+.-..+.. ...... .+++.+++....- ....++.+|+.+++. +.++
T Consensus 339 ~l~~~~~~~~~---~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~-~~l~ 402 (686)
T PRK10115 339 SLRQINRKTRE---VIGIAFDDPAY-VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER-RVLK 402 (686)
T ss_pred EEEEEcCCCCc---eEEecCCCCce-EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE-EEEE
Confidence 69999986543 34443122122 222222 2224566655543 346899999977653 4443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.4e-05 Score=74.26 Aligned_cols=259 Identities=14% Similarity=0.156 Sum_probs=133.4
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT 177 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~ 177 (734)
+++..+|-.-..+.+..-.-|..+..+|. -.+++...+..... -.+++++||++|.-+.-..| .|.|..+..
T Consensus 49 ~~~~~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ln~~~~~g~~p---~yvsvd~~g~~vf~AnY~~g----~v~v~p~~~ 120 (346)
T COG2706 49 PDQRHLYVVNEPGEEGGVAAYRIDPDDGR-LTFLNRQTLPGSPP---CYVSVDEDGRFVFVANYHSG----SVSVYPLQA 120 (346)
T ss_pred CCCCEEEEEEecCCcCcEEEEEEcCCCCe-EEEeeccccCCCCC---eEEEECCCCCEEEEEEccCc----eEEEEEccc
Confidence 45556665555544444555666654444 33444333322222 45789999998876655443 577777743
Q ss_pred -CCcccc---c--ccc--------cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCee--
Q psy4818 178 -GKDYPE---V--LKN--------VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIP-- 241 (734)
Q Consensus 178 -g~~~~~---~--~~~--------~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~-- 241 (734)
|..... . .+. .......++||++.|+.... ...+|+..++..+..+...
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL---------------G~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL---------------GTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec---------------CCceEEEEEcccCcccccccc
Confidence 542110 0 011 01245688999998876653 1236777777654332211
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC--CCCCcccCCCCceeeeccccceEEE-EEecCCeEE
Q psy4818 242 VVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS--LPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELI 318 (734)
Q Consensus 242 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~ 318 (734)
.+.....+ ..+.|+|+||++++.. +-+ +.|-++..+. ++-.+|+.-..++.-..+....... +++||+.||
T Consensus 186 ~v~~G~GP---RHi~FHpn~k~aY~v~-EL~--stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 186 EVKPGAGP---RHIVFHPNGKYAYLVN-ELN--STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred ccCCCCCc---ceEEEcCCCcEEEEEe-ccC--CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 11222233 3578999999987654 222 4455554443 2211221101111111222222223 899988555
Q ss_pred EEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc-eeEEEEECCCCce
Q psy4818 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR-SVMDLHDLNTGKR 388 (734)
Q Consensus 319 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~~dl~~g~~ 388 (734)
.+|+....-.++.+|.+++... ....++. +......+.+..++.+++.+.+++. -.++..|.++|+.
T Consensus 260 -asNRg~dsI~~f~V~~~~g~L~-~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 260 -ASNRGHDSIAVFSVDPDGGKLE-LVGITPT-EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred -EecCCCCeEEEEEEcCCCCEEE-EEEEecc-CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 6888665555666776665410 1111111 1232344555554555555655543 4677777778875
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0003 Score=68.49 Aligned_cols=245 Identities=14% Similarity=0.120 Sum_probs=142.5
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+.++.+|+||..|+-++.. ..|.++|..+|+.+.... ......-+.|......+.+.+.-
T Consensus 15 ~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk------------ 77 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK------------ 77 (311)
T ss_pred CceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC------------
Confidence 447889999999999875432 379999999998654321 21112467788888888887752
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
....|.+..+-+.. -+..|. .+...+.++..||-+...+ ++ .....|++||+..... +-+.
T Consensus 78 --~d~tIryLsl~dNk--ylRYF~--GH~~~V~sL~~sP~~d~Fl-S~---S~D~tvrLWDlR~~~c---------qg~l 138 (311)
T KOG1446|consen 78 --EDDTIRYLSLHDNK--YLRYFP--GHKKRVNSLSVSPKDDTFL-SS---SLDKTVRLWDLRVKKC---------QGLL 138 (311)
T ss_pred --CCCceEEEEeecCc--eEEEcC--CCCceEEEEEecCCCCeEE-ec---ccCCeEEeeEecCCCC---------ceEE
Confidence 12367777776542 223333 3455677899999885433 32 2336899999986222 1122
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC-CCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-DENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
.-.......++|.|-.++...+ . . .|-++|+..-.....+..... .+......+.+.++++.++....+ +.++
T Consensus 139 ~~~~~pi~AfDp~GLifA~~~~--~-~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--s~~~ 212 (311)
T KOG1446|consen 139 NLSGRPIAAFDPEGLIFALANG--S-E-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--SFIY 212 (311)
T ss_pred ecCCCcceeECCCCcEEEEecC--C-C-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC--CcEE
Confidence 2122223347787754443322 2 2 577788764222223333322 222333444454445444444433 5788
Q ss_pred EEECCCCceeeeeCCC--CceE-EeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 380 LHDLNTGKRLHSFPLD--LGQI-THISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~--~g~v-~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
++|.-+|..+..+... .+.+ .+.+++||++ +++..++. +.+..|++ +++
T Consensus 213 ~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~d---g~i~vw~~-----~tg 264 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDD---GTIHVWNL-----ETG 264 (311)
T ss_pred EEEccCCcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCC---CcEEEEEc-----CCC
Confidence 8888889876666544 2211 2456778885 44444443 47999999 566
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-05 Score=83.52 Aligned_cols=215 Identities=16% Similarity=0.206 Sum_probs=105.3
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC-CCcccc--cc------------cccccCeeEEEcCCcEEEEEEEec
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-GKDYPE--VL------------KNVKFPSISWTHDHKGFFYNQYCD 209 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~-g~~~~~--~~------------~~~~~~~~~wSpDg~~l~y~~~~~ 209 (734)
-.++++|||++|+.+-..+| .+.++++.. |..... .. .......+.++|||+.++....
T Consensus 90 ~~i~~~~~g~~l~vany~~g----~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-- 163 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGG----SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-- 163 (345)
T ss_dssp EEEEECTTSSEEEEEETTTT----EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET--
T ss_pred EEEEEecCCCEEEEEEccCC----eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec--
Confidence 35889999998876654443 477777765 442111 00 1112246899999998865432
Q ss_pred CCCCCCCCcccccCCcEEEEEECCCCCCC--CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC
Q psy4818 210 INGTADGTETTAHMGQKIYYHVLGTEQDK--DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 287 (734)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~l~t~~~~--~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~ 287 (734)
...+|++++++....+ .......+... --..+.|+|||+++++.. + ..+.|.++++.. ..
T Consensus 164 -------------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~-e--~s~~v~v~~~~~-~~ 225 (345)
T PF10282_consen 164 -------------GADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVN-E--LSNTVSVFDYDP-SD 225 (345)
T ss_dssp -------------TTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEE-T--TTTEEEEEEEET-TT
T ss_pred -------------CCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEec-C--CCCcEEEEeecc-cC
Confidence 2237888888765422 11111222222 124689999999987754 2 225677777663 11
Q ss_pred CcccCCCCceeeecccc---ceEE-EEEecCCeEEEEeCCCCCCceEEEEec--CCCCCCCceEeecCCCCceeEEEEEe
Q psy4818 288 GKISGKFPLKTVIPGMD---HHHE-IIANNGPELIVKTTKNAPKGKVVTINL--NNPCEKNWKTLIPEDENRTLDVVAAV 361 (734)
Q Consensus 288 ~~l~~~~~~~~l~~~~~---~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 361 (734)
..++.......+-.+.. .... .++|||+.||+ +|+... .|..+++ +++..... ..++-. ......+.+.
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv-snr~~~--sI~vf~~d~~~g~l~~~-~~~~~~-G~~Pr~~~~s 300 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV-SNRGSN--SISVFDLDPATGTLTLV-QTVPTG-GKFPRHFAFS 300 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE-EECTTT--EEEEEEECTTTTTEEEE-EEEEES-SSSEEEEEE-
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEE-EeccCC--EEEEEEEecCCCceEEE-EEEeCC-CCCccEEEEe
Confidence 12211000011111111 1222 38999987665 666533 3666665 33431111 222222 2223445444
Q ss_pred -eCCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 362 -ANNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 362 -~~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
+++.+++.....+.-.++.+|.++|+.
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 434555544333333555666677764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-06 Score=72.02 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=99.5
Q ss_pred CCCc-EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc-cccCCCchhH-HHHHHHHHHHc
Q psy4818 486 RRNP-VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR-LLKKQNCFDD-FQAAAEYMINK 562 (734)
Q Consensus 486 ~~~P-~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~-~~~~~~~~~D-~~~~~~~l~~~ 562 (734)
++.| +||+.||...+..++... ..+..|+++|+.|+.+++.- =..-....+ ...+....++ .+.++-.|...
T Consensus 11 g~~~~tilLaHGAGasmdSt~m~-~~a~~la~~G~~vaRfefpY----ma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~ 85 (213)
T COG3571 11 GPAPVTILLAHGAGASMDSTSMT-AVAAALARRGWLVARFEFPY----MAARRTGRRKPPPGSGTLNPEYIVAIAQLRAG 85 (213)
T ss_pred CCCCEEEEEecCCCCCCCCHHHH-HHHHHHHhCceeEEEeecch----hhhccccCCCCcCccccCCHHHHHHHHHHHhc
Confidence 3444 778899986555554433 45567788899999998752 100000000 1122233333 44555556544
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc-CCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCC
Q psy4818 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL-VGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHN 641 (734)
Q Consensus 563 ~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~-~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~ 641 (734)
.+...++|.|+||||-++.+++..---.+.+.+|. +||.- =|.|+. .. ..+
T Consensus 86 --l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp----------------pGKPe~---~R-------t~H 137 (213)
T COG3571 86 --LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP----------------PGKPEQ---LR-------TEH 137 (213)
T ss_pred --ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC----------------CCCccc---ch-------hhh
Confidence 45567999999999999998875311113444432 33220 133322 11 133
Q ss_pred CCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCC
Q psy4818 642 IKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 642 ~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~ 704 (734)
+.. +++| +||+||+.|..-...+. +... . ..+++++...++.|-..
T Consensus 138 L~g----l~tP-tli~qGtrD~fGtr~~V---a~y~--l-------s~~iev~wl~~adHDLk 183 (213)
T COG3571 138 LTG----LKTP-TLITQGTRDEFGTRDEV---AGYA--L-------SDPIEVVWLEDADHDLK 183 (213)
T ss_pred ccC----CCCC-eEEeecccccccCHHHH---Hhhh--c-------CCceEEEEeccCccccc
Confidence 333 7788 99999999987666554 2211 2 56899999999999765
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.57 E-value=6e-05 Score=75.51 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=131.5
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEE-cCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWT-HDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wS-pDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
.++.|.+....|.|+--.. ..|+.++..+++........ ..+.... +| ..|+.+...
T Consensus 3 Egp~~d~~~g~l~~~D~~~----~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~--------------- 60 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPG----GRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSG--------------- 60 (246)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETT---------------
T ss_pred cceEEECCCCEEEEEEcCC----CEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcC---------------
Confidence 3688999666666654333 37999999998754322222 2466777 56 456655421
Q ss_pred CcEEEEEECCCCCCCCeeEEecC--C-CCeeEEEEEEecCCcEEEEEEecCCCC-----ceEEEEeCCCCCCCcccCCCC
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFP--N-GRSLGLHSEVTDCGRYLLVSTSNNTQG-----SDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~--~-~~~~~~~~~~SpDG~~l~~~~~~~~~~-----~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.+.+.++.++..+ .+.... . ......++.++|||+ |+++....... ..||.++.+. .
T Consensus 61 --~~~~~d~~~g~~~--~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~-~--------- 125 (246)
T PF08450_consen 61 --GIAVVDPDTGKVT--VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG-K--------- 125 (246)
T ss_dssp --CEEEEETTTTEEE--EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-E---------
T ss_pred --ceEEEecCCCcEE--EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC-e---------
Confidence 2444476665322 233321 1 233556789999999 66665432221 4699998874 1
Q ss_pred ceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCC--CCceEeecCCCC-ceeEEEEEeeCCEEEEEEE
Q psy4818 296 LKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCE--KNWKTLIPEDEN-RTLDVVAAVANNKLIVHYI 371 (734)
Q Consensus 296 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~ 371 (734)
...+..+...... .|+||++.||+.... ..+|++++++.... ...+.+...... ....++.+..++.|+++..
T Consensus 126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 126 VTVVADGLGFPNGIAFSPDGKTLYVADSF---NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEEEESSEEEEEEETTSSEEEEEETT---TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred EEEEecCcccccceEECCcchheeecccc---cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 2333333332223 399999988875432 45799999864321 111222222211 2356676666677777654
Q ss_pred eCCceeEEEEECCCCceeeeeCCCCceEEeecc-CcccceEEEEEe
Q psy4818 372 QNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG-RRKYNEVFYGFT 416 (734)
Q Consensus 372 ~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~-~~d~~~l~~~~s 416 (734)
+...|++++. +|+.+..+..+...++++++ -++.++|+++.+
T Consensus 203 --~~~~I~~~~p-~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 203 --GGGRIVVFDP-DGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp --TTTEEEEEET-TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred --CCCEEEEECC-CccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 3368999999 59988888877335556665 356778887654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-07 Score=86.33 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=95.6
Q ss_pred CCCCCceEEEEEEEcC----CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecc
Q psy4818 452 FEPTLFQTKQVYFRSK----DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIR 527 (734)
Q Consensus 452 ~~~~~~~~~~~~~~s~----dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~r 527 (734)
|....|..+.+.+.+. ---..|..|+.|.. .+.+|+|++.||..-. .+|-...++.++..||+|++|+.-
T Consensus 9 F~~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~---~G~yPVilF~HG~~l~---ns~Ys~lL~HIASHGfIVVAPQl~ 82 (307)
T PF07224_consen 9 FETGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSE---AGTYPVILFLHGFNLY---NSFYSQLLAHIASHGFIVVAPQLY 82 (307)
T ss_pred eecCCceeEEEeecCCCCCCCCCCCCeEEecCCc---CCCccEEEEeechhhh---hHHHHHHHHHHhhcCeEEEechhh
Confidence 4555666666666321 22457899999976 6899999999996443 233334556678889999999975
Q ss_pred cCCCCCchhhhccccccCCCchhHHHHHHHHHHHc--------CCCCCCcEEEEEcChHHHHHHHHHhcC-CC-ceeEEE
Q psy4818 528 GGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK--------KYTKPKYITIMGGSNGGLLVGACLNQR-PE-LYGAAL 597 (734)
Q Consensus 528 G~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~-~~~a~v 597 (734)
... ...+..++++...+++||-+. -..+.++++++|||.||-.+.+++..+ .+ .|.+.|
T Consensus 83 ~~~-----------~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLI 151 (307)
T PF07224_consen 83 TLF-----------PPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALI 151 (307)
T ss_pred ccc-----------CCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhhee
Confidence 421 123445678888899998653 125778999999999999999998755 23 377777
Q ss_pred EcCCcch
Q psy4818 598 ILVGALD 604 (734)
Q Consensus 598 ~~~~~~d 604 (734)
..-|+.-
T Consensus 152 GiDPV~G 158 (307)
T PF07224_consen 152 GIDPVAG 158 (307)
T ss_pred cccccCC
Confidence 7777653
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00029 Score=70.11 Aligned_cols=270 Identities=15% Similarity=0.111 Sum_probs=135.1
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc---ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP---EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~---~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.+.++|+|++++|.-....+....-.-|-+|-.+|+... ....+...-.++.++||+.|+-.....
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~----------- 110 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS----------- 110 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC-----------
Confidence 456899999997755544322222345666666676311 112221124678899998666554321
Q ss_pred ccCCcEEEEEECCCCCC-C---CeeEEecC--C---CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 221 AHMGQKIYYHVLGTEQD-K---DIPVVEFP--N---GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~-~---~~~v~~~~--~---~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
..|.+..+..... . ++....+. . +........++|||++|+...- ...+|++++++.|. |+
T Consensus 111 ----g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL---G~Dri~~y~~~dg~---L~ 180 (346)
T COG2706 111 ----GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL---GTDRIFLYDLDDGK---LT 180 (346)
T ss_pred ----ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec---CCceEEEEEcccCc---cc
Confidence 1333333322110 0 00001110 0 0112345789999999986432 22588999988643 22
Q ss_pred CCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceE--eecCC--CCceeEEEEEeeCCEEE
Q psy4818 292 GKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT--LIPED--ENRTLDVVAAVANNKLI 367 (734)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~--~~~~~~~~~~~~~~~l~ 367 (734)
...+ -.+..+.....-.|.|+|+..|+++..++ .-.++.++-..++.+.++. .+|.+ .......+.+..+++++
T Consensus 181 ~~~~-~~v~~G~GPRHi~FHpn~k~aY~v~EL~s-tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 181 PADP-AEVKPGAGPRHIVFHPNGKYAYLVNELNS-TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred cccc-cccCCCCCcceEEEcCCCcEEEEEeccCC-EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 1111 11233444445569999998888776643 2234444443344222222 22222 01122334444445555
Q ss_pred EEEEeCCc-eeEEEEECCCCceeeeeCC--CCce-EEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeE
Q psy4818 368 VHYIQNVR-SVMDLHDLNTGKRLHSFPL--DLGQ-ITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTI 443 (734)
Q Consensus 368 ~~~~~~~~-~~l~~~dl~~g~~~~~l~~--~~g~-v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~ 443 (734)
+..++... -.++.+|..+|+. ..+.. ..|. -..+.+++.++.|+.+.+...+ -.+|..|- ++| .+++
T Consensus 259 YasNRg~dsI~~f~V~~~~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~-----~TG--~L~~ 329 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGKL-ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN-ITVFERDK-----ETG--RLTL 329 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCEE-EEEEEeccCCcCCccceeCCCCCEEEEEccCCCc-EEEEEEcC-----CCc--eEEe
Confidence 54544332 2455556655653 33221 1233 2456677777777666555443 56788887 677 5554
Q ss_pred Ee
Q psy4818 444 FR 445 (734)
Q Consensus 444 ~~ 445 (734)
+.
T Consensus 330 ~~ 331 (346)
T COG2706 330 LG 331 (346)
T ss_pred cc
Confidence 43
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.1e-07 Score=90.62 Aligned_cols=206 Identities=18% Similarity=0.268 Sum_probs=117.9
Q ss_pred EEEEE-eccccCCCCCcEEEEecCCC-CCcCCccc---cHHHHHHHHhcCeEEEEEecccCC--CCCchhhhccccccCC
Q psy4818 474 MYIIH-RVGALRNRRNPVIIYGYGGY-GVSVLPTF---SISRCMFLRHFNGIYAIPNIRGGG--ELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 474 ~~~~~-p~~~~~~~~~P~vv~~hGg~-~~~~~~~~---~~~~~~~l~~~G~~v~~~~~rG~~--~~g~~~~~~~~~~~~~ 546 (734)
.|++. |.+.++ +.-|+|||+|||. .....+.. ...+..+|. ..++++.||.... +.| ..-.
T Consensus 108 ~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~---------~~yP 175 (374)
T PF10340_consen 108 YWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHG---------HKYP 175 (374)
T ss_pred EEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCC---------CcCc
Confidence 56666 655432 3459999999982 22333321 112334454 4689999998643 222 2233
Q ss_pred CchhHHHHHHHHHH-HcCCCCCCcEEEEEcChHHHHHHHHHhc--C--C-CceeEEEEcCCcchhcccccccc-------
Q psy4818 547 NCFDDFQAAAEYMI-NKKYTKPKYITIMGGSNGGLLVGACLNQ--R--P-ELYGAALILVGALDMLRFNKFTI------- 613 (734)
Q Consensus 547 ~~~~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~~~~~~~~~--~--p-~~~~a~v~~~~~~d~~~~~~~~~------- 613 (734)
..+.++++..++|+ +.|. +.|.++|-||||.|++.++.. . + -.-+.+|+.+|.+++........
T Consensus 176 tQL~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~ 252 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNE 252 (374)
T ss_pred hHHHHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccc
Confidence 45679999999999 5554 679999999999999988642 1 1 12479999999988762111000
Q ss_pred -----Cc----cccccc-CCCCCHHHHHHHHhCCccCCCCCCCC-----C--ccCCcEEEEecCCCCCCCChHHHHHHHH
Q psy4818 614 -----AY----YSESEF-GSPNNKTHFHNLLSYSPLHNIKVPPN-----N--TQYPATLVLTGDHDDRVPPLHSYKFIAT 676 (734)
Q Consensus 614 -----~~----~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~~-----~--~~~P~~Li~~g~~D~~v~~~~~~~~~~~ 676 (734)
.. .|...| |+ .+++. .....|+.++..+-+ . -++ .++|+.|+++ |-..+.++|+++
T Consensus 253 ~~D~l~~~~~~~~~~~y~~~-~~~~~---~~~~~~~~n~~~n~d~~~W~~I~~~~-~vfVi~Ge~E--vfrddI~~~~~~ 325 (374)
T PF10340_consen 253 KRDMLSYKGLSMFGDAYIGN-NDPEN---DLNSLPFVNIEYNFDAEDWKDILKKY-SVFVIYGEDE--VFRDDILEWAKK 325 (374)
T ss_pred cccccchhhHHHHHHhhccc-ccccc---ccccCCccCcccCCChhHHHHhccCC-cEEEEECCcc--ccHHHHHHHHHH
Confidence 00 000011 11 00000 011222222211000 0 112 3999999865 567899999999
Q ss_pred HHhhhCCCCCCCCcEEEEEeCCCCCCC
Q psy4818 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 677 L~~~~~~~~~~~~~~~~~~~~~~gH~~ 703 (734)
+...... +. +.+....+.+++.|..
T Consensus 326 ~~~~~~~-~~-~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 326 LNDVKPN-KF-SNSNNVYIDEGGIHIG 350 (374)
T ss_pred HhhcCcc-cc-CCcceEEEecCCcccc
Confidence 9866110 00 3356777889999965
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-05 Score=90.43 Aligned_cols=236 Identities=14% Similarity=0.170 Sum_probs=131.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC----Ccc--c--ccccccccCeeEEEcC-CcEEEEEEEecCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG----KDY--P--EVLKNVKFPSISWTHD-HKGFFYNQYCDING 212 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g----~~~--~--~~~~~~~~~~~~wSpD-g~~l~y~~~~~~~~ 212 (734)
..+..++|||||++||-+. ....|++||+.+. ... + ..........+.|+|. ++.|+....+
T Consensus 484 ~~V~~i~fs~dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D---- 554 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE---- 554 (793)
T ss_pred CcEEEEEECCCCCEEEEEe-----CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC----
Confidence 4477899999999988544 2347999997642 110 0 0111223467899886 4555444432
Q ss_pred CCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 213 TADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
..|.+|++.+++ .+..+. .+...+..+.|+| ||.+|+-. .....|.+||+.++.
T Consensus 555 ------------g~v~lWd~~~~~--~~~~~~--~H~~~V~~l~~~p~~~~~L~Sg----s~Dg~v~iWd~~~~~----- 609 (793)
T PLN00181 555 ------------GVVQVWDVARSQ--LVTEMK--EHEKRVWSIDYSSADPTLLASG----SDDGSVKLWSINQGV----- 609 (793)
T ss_pred ------------CeEEEEECCCCe--EEEEec--CCCCCEEEEEEcCCCCCEEEEE----cCCCEEEEEECCCCc-----
Confidence 268889987653 122222 3344567899997 67776632 223679999998721
Q ss_pred CCCCceeeeccccceEEE-EE-ecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEE
Q psy4818 292 GKFPLKTVIPGMDHHHEI-IA-NNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVH 369 (734)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~-~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 369 (734)
....+. ........ |. ++|..|+..+. ++.|+.||+.+... ....+..+ ...+..+.+.+ +..+++
T Consensus 610 ---~~~~~~-~~~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~-~~~~~~~h--~~~V~~v~f~~-~~~lvs 677 (793)
T PLN00181 610 ---SIGTIK-TKANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKL-PLCTMIGH--SKTVSYVRFVD-SSTLVS 677 (793)
T ss_pred ---EEEEEe-cCCCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCc-cceEecCC--CCCEEEEEEeC-CCEEEE
Confidence 111221 11222222 54 45666554332 34699999875431 12233322 23455565555 445555
Q ss_pred EEeCCceeEEEEECCCC------ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 370 YIQNVRSVMDLHDLNTG------KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 370 ~~~~~~~~l~~~dl~~g------~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+ ..|.+||+..+ +.+..+......+..+.+++++. ++++.+.. ..+++|+.
T Consensus 678 ~s~D--~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D---~~v~iw~~ 737 (793)
T PLN00181 678 SSTD--NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSET---NEVFVYHK 737 (793)
T ss_pred EECC--CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCC---CEEEEEEC
Confidence 5555 46889998532 33455554444455566777765 33333322 36888887
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.8e-05 Score=71.31 Aligned_cols=217 Identities=15% Similarity=0.161 Sum_probs=135.7
Q ss_pred EEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC
Q psy4818 168 NTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP 246 (734)
Q Consensus 168 ~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~ 246 (734)
.+|++|.+.||....... ....+..+..+||++.|+.... +.|.++++.+.....+..|+..
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-----------------qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-----------------QHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-----------------CeeEEEEccCCCCCceeEEecc
Confidence 689999999998644221 2223467889999998876553 3688889998877666777764
Q ss_pred CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCC
Q psy4818 247 NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNA 325 (734)
Q Consensus 247 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~ 325 (734)
...+..+.|--||+|++- +++...+.+||+.... ..+..........+ ..|+...| |.++.
T Consensus 83 --~kNVtaVgF~~dgrWMyT----gseDgt~kIWdlR~~~---------~qR~~~~~spVn~vvlhpnQteL-is~dq-- 144 (311)
T KOG0315|consen 83 --TKNVTAVGFQCDGRWMYT----GSEDGTVKIWDLRSLS---------CQRNYQHNSPVNTVVLHPNQTEL-ISGDQ-- 144 (311)
T ss_pred --CCceEEEEEeecCeEEEe----cCCCceEEEEeccCcc---------cchhccCCCCcceEEecCCcceE-EeecC--
Confidence 235678899999999972 2334678889987721 12222221222223 44554444 44444
Q ss_pred CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCcee------eeeCCCCceE
Q psy4818 326 PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRL------HSFPLDLGQI 399 (734)
Q Consensus 326 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~------~~l~~~~g~v 399 (734)
++.|.+||+..... -.+++|+. ...++......++..++..+.. ...|+|++-++... .++....+.+
T Consensus 145 -sg~irvWDl~~~~c--~~~liPe~-~~~i~sl~v~~dgsml~a~nnk--G~cyvW~l~~~~~~s~l~P~~k~~ah~~~i 218 (311)
T KOG0315|consen 145 -SGNIRVWDLGENSC--THELIPED-DTSIQSLTVMPDGSMLAAANNK--GNCYVWRLLNHQTASELEPVHKFQAHNGHI 218 (311)
T ss_pred -CCcEEEEEccCCcc--ccccCCCC-CcceeeEEEcCCCcEEEEecCC--ccEEEEEccCCCccccceEhhheecccceE
Confidence 34699999975431 35677776 5666766665445555555433 57999998554322 2233335666
Q ss_pred EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 400 THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 400 ~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..--.|||++.++ ++++.. ++++++.
T Consensus 219 l~C~lSPd~k~la-t~ssdk---tv~iwn~ 244 (311)
T KOG0315|consen 219 LRCLLSPDVKYLA-TCSSDK---TVKIWNT 244 (311)
T ss_pred EEEEECCCCcEEE-eecCCc---eEEEEec
Confidence 5666788886554 455543 6888887
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=83.31 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=79.8
Q ss_pred EEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCe-EEEEEeccc---------CC
Q psy4818 462 VYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNG-IYAIPNIRG---------GG 530 (734)
Q Consensus 462 ~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~-~v~~~~~rG---------~~ 530 (734)
..+.|. .|++-.+++..|+++.++.++|||.+.-|. .. .+.....+...+++.=. ..+...|+. ..
T Consensus 12 ~~l~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDGn-~v--f~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~ 88 (264)
T COG2819 12 RDLKSANTGRKYRIFIATPKNYPKPGGYPVLYMLDGN-AV--FNALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAY 88 (264)
T ss_pred EeeeecCCCcEEEEEecCCCCCCCCCCCcEEEEecch-hh--hchHHHHhhhhhhcCCCceEEEeccccccccccccccc
Confidence 334444 456778999999998777779886655443 21 11111122333433211 122222222 11
Q ss_pred CCCchh----hh---cc-cc-ccCCCchhHHH-HHHHHHHHcC-CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 531 ELGEDW----HN---AG-RL-LKKQNCFDDFQ-AAAEYMINKK-YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 531 ~~g~~~----~~---~~-~~-~~~~~~~~D~~-~~~~~l~~~~-~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
.|-..- .. .+ .. ..+...|.+|+ .-++=++++. -++++|.+|+|||+||++++.++..+|+.|...++.
T Consensus 89 DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~ 168 (264)
T COG2819 89 DYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLI 168 (264)
T ss_pred cCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeee
Confidence 111100 00 00 11 11223344443 4555555654 489999999999999999999999999999999999
Q ss_pred CCcc
Q psy4818 600 VGAL 603 (734)
Q Consensus 600 ~~~~ 603 (734)
+|-.
T Consensus 169 SPSl 172 (264)
T COG2819 169 SPSL 172 (264)
T ss_pred cchh
Confidence 9855
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-06 Score=88.88 Aligned_cols=193 Identities=12% Similarity=0.114 Sum_probs=122.6
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
+.+..||||.+.|+-++.|. .+++|.+++.. -+.++.....|.| .+.|+|-|-|.+-.
T Consensus 454 Vyg~sFsPd~rfLlScSED~----------------svRLWsl~t~s--~~V~y~GH~~PVw--dV~F~P~GyYFata-- 511 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDS----------------SVRLWSLDTWS--CLVIYKGHLAPVW--DVQFAPRGYYFATA-- 511 (707)
T ss_pred eeeeeecccccceeeccCCc----------------ceeeeecccce--eEEEecCCCccee--eEEecCCceEEEec--
Confidence 35678999999887766433 57778887753 4456665555544 56789999876632
Q ss_pred cCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-E-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee
Q psy4818 270 NNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-I-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 347 (734)
Q Consensus 270 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 347 (734)
++....++|-.|-.. +.+ ++.+...+.. + |.|+..+++ +. +.+..+-.||+.++. ..+++
T Consensus 512 s~D~tArLWs~d~~~----------PlR-ifaghlsDV~cv~FHPNs~Y~a--TG--SsD~tVRlWDv~~G~---~VRiF 573 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNK----------PLR-IFAGHLSDVDCVSFHPNSNYVA--TG--SSDRTVRLWDVSTGN---SVRIF 573 (707)
T ss_pred CCCceeeeeecccCC----------chh-hhcccccccceEEECCcccccc--cC--CCCceEEEEEcCCCc---EEEEe
Confidence 222224566555422 333 3333333333 3 888876444 22 334568889998876 35666
Q ss_pred cCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEE
Q psy4818 348 PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
.+. ...+..+.+...++.+++...+ ..|.+||+.+|+.+..+....+.+.+++++.|+..++ +.+..+ .+..|
T Consensus 574 ~GH-~~~V~al~~Sp~Gr~LaSg~ed--~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLa-sgg~Dn---sV~lW 646 (707)
T KOG0263|consen 574 TGH-KGPVTALAFSPCGRYLASGDED--GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLA-SGGADN---SVRLW 646 (707)
T ss_pred cCC-CCceEEEEEcCCCceEeecccC--CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEE-ecCCCC---eEEEE
Confidence 654 4555666555546666666555 5799999998887777766678888999999886554 433333 56777
Q ss_pred eC
Q psy4818 428 NI 429 (734)
Q Consensus 428 d~ 429 (734)
|+
T Consensus 647 D~ 648 (707)
T KOG0263|consen 647 DL 648 (707)
T ss_pred Ec
Confidence 87
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.7e-05 Score=72.00 Aligned_cols=199 Identities=9% Similarity=0.079 Sum_probs=120.9
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
+..+.|++|+|.|+-.+.+. ++-+|+.-|..... .+. -...|++..++||.|++++--
T Consensus 58 i~~~~ws~Dsr~ivSaSqDG----------------klIvWDs~TtnK~h--aip--l~s~WVMtCA~sPSg~~VAcG-- 115 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDG----------------KLIVWDSFTTNKVH--AIP--LPSSWVMTCAYSPSGNFVACG-- 115 (343)
T ss_pred eeeeEecCCcCeEEeeccCC----------------eEEEEEccccccee--EEe--cCceeEEEEEECCCCCeEEec--
Confidence 36889999999998887654 68888887765432 222 235699999999999999852
Q ss_pred cCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee
Q psy4818 270 NNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 347 (734)
Q Consensus 270 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 347 (734)
+-.+..-++++.+..... ..+..+.+.+...-.. .|..|++ |+ + ..++.....||++++. ....+
T Consensus 116 --GLdN~Csiy~ls~~d~~g---~~~v~r~l~gHtgylScC~f~dD~~-il--T--~SGD~TCalWDie~g~---~~~~f 182 (343)
T KOG0286|consen 116 --GLDNKCSIYPLSTRDAEG---NVRVSRELAGHTGYLSCCRFLDDNH-IL--T--GSGDMTCALWDIETGQ---QTQVF 182 (343)
T ss_pred --CcCceeEEEecccccccc---cceeeeeecCccceeEEEEEcCCCc-eE--e--cCCCceEEEEEcccce---EEEEe
Confidence 223566677776521111 0112222222221111 1555544 43 2 2235679999999876 23344
Q ss_pred cCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEE
Q psy4818 348 PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
.+...+++.-...+.+...+++..-+ ...++||+.+|...+.+......|.++.+.|++..+ ...|.. .....|
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD--~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~af--atGSDD--~tcRly 256 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCD--KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAF--ATGSDD--ATCRLY 256 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccc--cceeeeeccCcceeEeecccccccceEEEccCCCee--eecCCC--ceeEEE
Confidence 44334554333233235566665544 467889998898888888877788888888988433 333332 346677
Q ss_pred eC
Q psy4818 428 NI 429 (734)
Q Consensus 428 d~ 429 (734)
|+
T Consensus 257 Dl 258 (343)
T KOG0286|consen 257 DL 258 (343)
T ss_pred ee
Confidence 77
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=85.33 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=119.2
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHh---cCeEEEEEecccCCCCCchh
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH---FNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~rG~~~~g~~~ 536 (734)
+.+.+.+.=..+....++.|.++.+..++|++++.||-......+-. ..+-.++++ ..-+++.+++=---.....+
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~~g~i~pai~vgid~~d~~~R~~~~ 148 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRIP-RILDSLIAAGEIPPAILVGIDYIDVKKRREEL 148 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCccccccEEEEeccHHHHhcCChH-HHHHHHHHcCCCCCceEEecCCCCHHHHHHHh
Confidence 34444443224567888899998888999999999986444433221 122233332 13566766642111001111
Q ss_pred hhccccccCCCchhHHHH--HHHHHHHcC--CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc
Q psy4818 537 HNAGRLLKKQNCFDDFQA--AAEYMINKK--YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~~--~~~~l~~~~--~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 612 (734)
+ .-..+.++++ .+-++.+.. .-++++-+++|-|+||+.+++++.++|+.|..+++++|.+++.--...
T Consensus 149 ~-------~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~- 220 (299)
T COG2382 149 H-------CNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ- 220 (299)
T ss_pred c-------ccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc-
Confidence 1 1111222211 233333332 246778899999999999999999999999999999998865321110
Q ss_pred cCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 613 IAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 613 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
.++ +....+. -++-+... .. -++...++.+...++ .+.+++.|+.. +.+..
T Consensus 221 ------~~~------~~~~~l~---~~~a~~~~----~~-~~l~~g~~~~~~~~p--Nr~L~~~L~~~-------g~~~~ 271 (299)
T COG2382 221 ------PQG------EVAESLK---ILHAIGTD----ER-IVLTTGGEEGDFLRP--NRALAAQLEKK-------GIPYY 271 (299)
T ss_pred ------ccc------chhhhhh---hhhccCcc----ce-EEeecCCccccccch--hHHHHHHHHhc-------CCcce
Confidence 000 1111111 12222221 11 155555555555444 56788999888 99999
Q ss_pred EEEeCCCCCCCC
Q psy4818 693 LRVEQDAGHGQG 704 (734)
Q Consensus 693 ~~~~~~~gH~~~ 704 (734)
+..|+| ||-..
T Consensus 272 yre~~G-gHdw~ 282 (299)
T COG2382 272 YREYPG-GHDWA 282 (299)
T ss_pred eeecCC-CCchh
Confidence 999998 99764
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00011 Score=72.80 Aligned_cols=243 Identities=12% Similarity=0.133 Sum_probs=138.4
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
++.-++....||-||.+|| .|+-...|.|+..++|.........+ ...-+.|.|-+..|++...+.
T Consensus 104 gHKDSVt~~~FshdgtlLA-----TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG-------- 170 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLA-----TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG-------- 170 (399)
T ss_pred CCCCceEEEEEccCceEEE-----ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCC--------
Confidence 4556799999999999999 34444679999999987532221111 223568899887777666543
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc-cc--CCC
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK-IS--GKF 294 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~-l~--~~~ 294 (734)
.||.|.+..+. ...++..... ....-.++||||.|+-... ...|.+|++.++..-. ++ +..
T Consensus 171 --------svWmw~ip~~~--~~kv~~Gh~~--~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg~p~~~~~~~e~~ 234 (399)
T KOG0296|consen 171 --------SVWMWQIPSQA--LCKVMSGHNS--PCTCGEFIPDGKRILTGYD----DGTIIVWNPKTGQPLHKITQAEGL 234 (399)
T ss_pred --------cEEEEECCCcc--eeeEecCCCC--CcccccccCCCceEEEEec----CceEEEEecCCCceeEEecccccC
Confidence 69999998752 3346655322 2334579999999975432 2578889988842100 00 000
Q ss_pred Cce---------eeeccccceEEEEEecC-CeEEEEeCC------------------------------CCCCceEEEEe
Q psy4818 295 PLK---------TVIPGMDHHHEIIANNG-PELIVKTTK------------------------------NAPKGKVVTIN 334 (734)
Q Consensus 295 ~~~---------~l~~~~~~~~~~~s~dg-~~l~~~s~~------------------------------~~~~~~l~~~d 334 (734)
+.+ .++.+.......+...+ .++++..|. +.-.++|..||
T Consensus 235 ~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD 314 (399)
T KOG0296|consen 235 ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYD 314 (399)
T ss_pred cCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEe
Confidence 010 01111111111111111 122222221 01235677777
Q ss_pred cCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEE
Q psy4818 335 LNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~ 414 (734)
++... ++...++. ..++ ...|.+ ...+++...+ ..|+.||..+|..+...+.+...|..++.+++.+ ++++
T Consensus 315 ~a~~~---~R~~c~he-~~V~-~l~w~~-t~~l~t~c~~--g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~-~vvT 385 (399)
T KOG0296|consen 315 LAAST---LRHICEHE-DGVT-KLKWLN-TDYLLTACAN--GKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR-LVVT 385 (399)
T ss_pred cccch---hheeccCC-CceE-EEEEcC-cchheeeccC--ceEEeeeccccceEEEEecCchheeEEEEcCCCc-EEEE
Confidence 76544 34444444 2333 333443 3334444444 4789999989998888887766677888888764 4455
Q ss_pred EecCC
Q psy4818 415 FTSFL 419 (734)
Q Consensus 415 ~ss~~ 419 (734)
.|..+
T Consensus 386 ~s~D~ 390 (399)
T KOG0296|consen 386 VSDDN 390 (399)
T ss_pred ecCCC
Confidence 55443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00012 Score=77.24 Aligned_cols=268 Identities=16% Similarity=0.151 Sum_probs=129.2
Q ss_pred EeeEEeCCCCcEEEEEEeCC-CCceEEEEEEECCCCCcccc---cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKS-GSDWNTLHIKDVDTGKDYPE---VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~-g~~~~~l~v~dl~~g~~~~~---~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
-+.+++||++++|..+.... ....-..+-++-++|+.... ...+...-.++.+||++.|+.....
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~----------- 107 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG----------- 107 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT-----------
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc-----------
Confidence 45688999998765444322 22223344444444553221 1122222467889999988776532
Q ss_pred cccCCcEEEEEECCCCCC-CCe-eEEe----cC----CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc
Q psy4818 220 TAHMGQKIYYHVLGTEQD-KDI-PVVE----FP----NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK 289 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~-~~~-~v~~----~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 289 (734)
...|.++++..... ... .++. .+ ........+.++|||+++++.. . ....|++++++. ....
T Consensus 108 ----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l--G~D~v~~~~~~~-~~~~ 179 (345)
T PF10282_consen 108 ----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-L--GADRVYVYDIDD-DTGK 179 (345)
T ss_dssp ----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-T--TTTEEEEEEE-T-TS-T
T ss_pred ----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-c--CCCEEEEEEEeC-CCce
Confidence 22466666654211 000 0110 01 0112345689999999997643 2 225788888876 2222
Q ss_pred ccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecC--CCCCCCceE--eecCCC--CceeEEEEEe-e
Q psy4818 290 ISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLN--NPCEKNWKT--LIPEDE--NRTLDVVAAV-A 362 (734)
Q Consensus 290 l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~~~~~~~~--l~~~~~--~~~~~~~~~~-~ 362 (734)
|+. .....+-.+.......|+|||+.+|++.... ..|..+++. ++....++. .++... ......+.+. +
T Consensus 180 l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 180 LTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELS---NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp EEE-EEEEECSTTSSEEEEEE-TTSSEEEEEETTT---TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred EEE-eeccccccCCCCcEEEEcCCcCEEEEecCCC---CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 321 0001122233334445999999888876543 346665655 332111111 122211 1123344444 4
Q ss_pred CCEEEEEEEeCCceeEEEEEC--CCCceeeeeCC-C-Cce-EEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 363 NNKLIVHYIQNVRSVMDLHDL--NTGKRLHSFPL-D-LGQ-ITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~dl--~~g~~~~~l~~-~-~g~-v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
++++|++. +. ...|.++++ .+|+. +.+.. + .|. -..+.++++++.+++....-. --.+|.+|. ++|
T Consensus 256 g~~lyvsn-r~-~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~-~v~vf~~d~-----~tG 326 (345)
T PF10282_consen 256 GRFLYVSN-RG-SNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN-TVSVFDIDP-----DTG 326 (345)
T ss_dssp SSEEEEEE-CT-TTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT-EEEEEEEET-----TTT
T ss_pred CCEEEEEe-cc-CCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-eEEEEEEeC-----CCC
Confidence 34555543 33 356777776 44553 33321 1 122 346777899988887665443 234556665 566
Q ss_pred CCceeEEe
Q psy4818 438 DFKPTIFR 445 (734)
Q Consensus 438 ~~~~~~~~ 445 (734)
.++...
T Consensus 327 --~l~~~~ 332 (345)
T PF10282_consen 327 --KLTPVG 332 (345)
T ss_dssp --EEEEEE
T ss_pred --cEEEec
Confidence 444433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-05 Score=89.55 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=97.2
Q ss_pred EEeCCeEEEEEEc---CCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC-------CCc
Q psy4818 97 QRQENNYFYFHNK---GLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS-------GSD 166 (734)
Q Consensus 97 ~~~g~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~-------g~~ 166 (734)
+++|++++|+... ..+....||+.+. ++..+.++... .+..++|||||++|+|..+.+ ...
T Consensus 358 SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--------~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 358 SRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--------SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--------CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4889999999852 1234568888775 44556655422 267899999999999987531 123
Q ss_pred eEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEE---EECCCCCCCCe---
Q psy4818 167 WNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY---HVLGTEQDKDI--- 240 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~---~~l~t~~~~~~--- 240 (734)
..+|+++++++|+... .... .+..+.|||||++|+|+.. .+|++ ...+.+. ..+
T Consensus 429 ~gql~~~~vd~ge~~~-~~~g-~Issl~wSpDG~RiA~i~~-----------------g~v~Va~Vvr~~~G~-~~l~~~ 488 (591)
T PRK13616 429 TGQLARTPVDASAVAS-RVPG-PISELQLSRDGVRAAMIIG-----------------GKVYLAVVEQTEDGQ-YALTNP 488 (591)
T ss_pred CceEEEEeccCchhhh-ccCC-CcCeEEECCCCCEEEEEEC-----------------CEEEEEEEEeCCCCc-eeeccc
Confidence 3689999998887543 2222 2479999999999999872 15666 3323332 111
Q ss_pred -eEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 241 -PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 241 -~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.+.... .....++.|..|++.+ +.. . .....+|.+++++
T Consensus 489 ~~l~~~l--~~~~~~l~W~~~~~L~-V~~-~-~~~~~v~~v~vDG 528 (591)
T PRK13616 489 REVGPGL--GDTAVSLDWRTGDSLV-VGR-S-DPEHPVWYVNLDG 528 (591)
T ss_pred EEeeccc--CCccccceEecCCEEE-EEe-c-CCCCceEEEecCC
Confidence 011111 1112568899999944 332 2 2336789999987
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00012 Score=78.97 Aligned_cols=238 Identities=13% Similarity=0.118 Sum_probs=142.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc-cccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~-~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+...++.+--+.||.... +| ..+++.+.+-..+ ...+........+|+--|.+|++....
T Consensus 268 vtaa~fH~~t~~lvvgFs-sG----~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k-------------- 328 (893)
T KOG0291|consen 268 VTAAAFHKGTNLLVVGFS-SG----EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK-------------- 328 (893)
T ss_pred eeeeeccCCceEEEEEec-CC----eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--------------
Confidence 445556655555554432 11 2233333333222 123443445788999999999998642
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
-.+|-+|+..+.. .|+.-..+......+++||||++|+- +.+...|.+||..+|- .......+
T Consensus 329 -lgQLlVweWqsEs----YVlKQQgH~~~i~~l~YSpDgq~iaT----G~eDgKVKvWn~~Sgf--------C~vTFteH 391 (893)
T KOG0291|consen 329 -LGQLLVWEWQSES----YVLKQQGHSDRITSLAYSPDGQLIAT----GAEDGKVKVWNTQSGF--------CFVTFTEH 391 (893)
T ss_pred -cceEEEEEeeccc----eeeeccccccceeeEEECCCCcEEEe----ccCCCcEEEEeccCce--------EEEEeccC
Confidence 2256666654321 33333333334567899999999983 3445789999988732 22333333
Q ss_pred ccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEE
Q psy4818 303 MDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 303 ~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 381 (734)
....... |+.+|+.++ .+.- ++.+-.||+.... +.+..+.+. +....-+.....+-+++....+. -.|++|
T Consensus 392 ts~Vt~v~f~~~g~~ll-ssSL---DGtVRAwDlkRYr--NfRTft~P~-p~QfscvavD~sGelV~AG~~d~-F~IfvW 463 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLL-SSSL---DGTVRAWDLKRYR--NFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDS-FEIFVW 463 (893)
T ss_pred CCceEEEEEEecCCEEE-Eeec---CCeEEeeeecccc--eeeeecCCC-ceeeeEEEEcCCCCEEEeeccce-EEEEEE
Confidence 2223333 888877554 3333 3568889986533 466666655 33333333333255666655553 579999
Q ss_pred ECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 382 dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++++|+.+..|..+.|-|++++++++++ ++++ .|+. .++.+||+
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS-~SWD--kTVRiW~i 507 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGS-LLAS-GSWD--KTVRIWDI 507 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccC-eEEe-cccc--ceEEEEEe
Confidence 9999999888888888898889999887 3344 3444 25666665
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-05 Score=79.16 Aligned_cols=294 Identities=18% Similarity=0.220 Sum_probs=152.5
Q ss_pred ccCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCC----eEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEe------
Q psy4818 92 KYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGS----TEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLS------ 161 (734)
Q Consensus 92 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~------ 161 (734)
.+-.|+|.|.|++-.+.+| -.|| ||+ .+.+..+ .+..+.|||..+||+--+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G----I~lW-----GG~~f~r~~RF~Hp---------~Vq~idfSP~EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG----IALW-----GGESFDRIQRFYHP---------GVQFIDFSPNEKYLVTYSPEPIIVE 275 (698)
T ss_pred eeEEecCCceEEEEEeccc----eeee-----cCccHHHHHhccCC---------CceeeecCCccceEEEecCCccccC
Confidence 3567788898888777665 3344 332 1223332 3678899999999874322
Q ss_pred CCCCceEEEEEEECCCCCcccc-cc--cc-cccCeeEEEcCCcEEEEEEEecCCC--CC------------CCCccccc-
Q psy4818 162 KSGSDWNTLHIKDVDTGKDYPE-VL--KN-VKFPSISWTHDHKGFFYNQYCDING--TA------------DGTETTAH- 222 (734)
Q Consensus 162 ~~g~~~~~l~v~dl~~g~~~~~-~~--~~-~~~~~~~wSpDg~~l~y~~~~~~~~--~~------------~~~~~~~~- 222 (734)
....|..+|.+||+.||..... .. .. ....-+.||.|+|+++-...+...- .+ +|...-+.
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccC
Confidence 1233557899999999975321 11 11 1225689999999877654432110 00 01000000
Q ss_pred -CCcEEEEEECCCCC-CCCeeEEecCCCC---------eeEEEEEEecCCcEEEEEEecCCCC------c--eEEEEeCC
Q psy4818 223 -MGQKIYYHVLGTEQ-DKDIPVVEFPNGR---------SLGLHSEVTDCGRYLLVSTSNNTQG------S--DLHYFDLH 283 (734)
Q Consensus 223 -~~~~l~~~~l~t~~-~~~~~v~~~~~~~---------~~~~~~~~SpDG~~l~~~~~~~~~~------~--~i~~~d~~ 283 (734)
...-|-+|.-.+.+ +..+.+.+.|... .....+.|-..|.||.+...+.... + +|+.++-.
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK 435 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK 435 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence 01123333222211 1112222222111 0113567999999999988764432 2 34444332
Q ss_pred CCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCC-CCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-
Q psy4818 284 SLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNA-PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA- 360 (734)
Q Consensus 284 ~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~-~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~- 360 (734)
. .++..+ .-.+....+ |.|.|+++.+++.... .+-+.|.+...... +. |+..-+......+.+
T Consensus 436 d---------Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~---~~-lVk~~dk~~~N~vfws 501 (698)
T KOG2314|consen 436 D---------IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK---PS-LVKELDKKFANTVFWS 501 (698)
T ss_pred C---------CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc---hh-hhhhhcccccceEEEc
Confidence 2 233222 222333344 9999999998876543 34455655543333 23 333322222333444
Q ss_pred eeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecC
Q psy4818 361 VANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSF 418 (734)
Q Consensus 361 ~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~ 418 (734)
+.|+.+++.........|+.+|+.-.. .+.+..+ ....+.+.++|.|+.+....+++
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a~-~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYAD-LKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchhh-hhhccCccccccccceECCCCCEEEEeeehh
Confidence 444556666666556789999884222 2333333 23345677888887665554444
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-07 Score=90.98 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=90.3
Q ss_pred EEEEEEEcCC-CcEEeEEEEEecccc---CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 459 TKQVYFRSKD-GTRVPMYIIHRVGAL---RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 459 ~~~~~~~s~d-g~~i~~~~~~p~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
...+++.... +.+++..+++|.... .....|+|++.||.... ...|. ..++.+++.||+|+.++..|+..-+.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~-~~A~~lAs~Gf~Va~~~hpgs~~~~~ 114 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFA-WLAEHLASYGFVVAAPDHPGSNAGGA 114 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchh-hhHHHHhhCceEEEeccCCCcccccC
Confidence 4556665543 568999999987642 11489999999995333 22333 24577888999999999999765443
Q ss_pred hhhhccccc----cCCCchhHHHHHHHHHHHc---C----CCCCCcEEEEEcChHHHHHHHHHhcCCC
Q psy4818 535 DWHNAGRLL----KKQNCFDDFQAAAEYMINK---K----YTKPKYITIMGGSNGGLLVGACLNQRPE 591 (734)
Q Consensus 535 ~~~~~~~~~----~~~~~~~D~~~~~~~l~~~---~----~~d~~ri~i~G~S~GG~~~~~~~~~~p~ 591 (734)
.=+.++... .......|+...+++|.+. . .+|+.+|++.|||+||+.++.++.-+.+
T Consensus 115 ~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 115 PAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred ChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 333333111 1123356888888888776 3 5899999999999999999999865544
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=8e-06 Score=82.81 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=114.7
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
++..+.+|||+++||+.-. ...|+++...|++.+....-......+.||-||+.|+.+..+
T Consensus 305 ~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------- 365 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------- 365 (514)
T ss_pred hhheeEecCCCCeEEEccc-----CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC--------------
Confidence 5678999999999997532 247999999999866533333345899999999888876542
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
.+||+++++..... ..|.. ++...-.+++.|++|+|+|.-+. ..-|-+||.++.... +...|...+-.-
T Consensus 366 --GeV~v~nl~~~~~~--~rf~D-~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s--~~PkPik~~dNL 434 (514)
T KOG2055|consen 366 --GEVYVWNLRQNSCL--HRFVD-DGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFAS--TNPKPIKTVDNL 434 (514)
T ss_pred --ceEEEEecCCcceE--EEEee-cCccceeeeeecCCCceEEeccC----cceEEEeccchhhcc--CCCCchhhhhhh
Confidence 27999999876322 22222 12224457889999999985332 234556665441110 011122211111
Q ss_pred ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCC-CCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 303 MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNP-CEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 303 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
...... .|+||++.|++.++......+| +.+.+- ...+|... ...-..+..+.+..++.++...+..|+..|+.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrL--VHvPS~TVFsNfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRL--VHVPSCTVFSNFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEE--EeccceeeeccCCCC--CCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 111222 3999999999888764433444 444332 12223211 11112233444444455555666666544443
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.8e-06 Score=82.52 Aligned_cols=232 Identities=13% Similarity=0.116 Sum_probs=132.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc----cccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN----VKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~----~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
+.+....|+|+|+..+|++.+ +.-+|.||+.+++..+..... -....+..|||++.|++.....
T Consensus 258 fPi~~a~f~p~G~~~i~~s~r----rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------- 325 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGR----RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------- 325 (514)
T ss_pred CccceeeecCCCceEEEeccc----ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc--------
Confidence 446678999999966666543 367999999999864432211 1235688899999888766422
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|++....|+. ++...+ -.+.+.++.||.||+.|+.... ..+||+||+... ....
T Consensus 326 --------~I~lLhakT~e----li~s~K-ieG~v~~~~fsSdsk~l~~~~~----~GeV~v~nl~~~--------~~~~ 380 (514)
T KOG2055|consen 326 --------HIHLLHAKTKE----LITSFK-IEGVVSDFTFSSDSKELLASGG----TGEVYVWNLRQN--------SCLH 380 (514)
T ss_pred --------eEEeehhhhhh----hhheee-eccEEeeEEEecCCcEEEEEcC----CceEEEEecCCc--------ceEE
Confidence 45555444432 222221 1335678999999999886532 259999999871 1122
Q ss_pred eeecc-ccceEEE-EEecCCeEEEEeCCCCCCceEEEEec--CCCCCCCceEeecCC-CCceeEEEEEeeCCEEEEEEEe
Q psy4818 298 TVIPG-MDHHHEI-IANNGPELIVKTTKNAPKGKVVTINL--NNPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 298 ~l~~~-~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~--~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
+.+.+ .-.+... .|++|++++.-++. +--.||-.+- .+..+ +.+..-. -...+.++.+..+..|+...++
T Consensus 381 rf~D~G~v~gts~~~S~ng~ylA~GS~~--GiVNIYd~~s~~~s~~P---kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 381 RFVDDGSVHGTSLCISLNGSYLATGSDS--GIVNIYDGNSCFASTNP---KPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred EEeecCccceeeeeecCCCceEEeccCc--ceEEEeccchhhccCCC---CchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 22221 1122333 78899866654443 2223444221 11221 2221111 0233455555555667766666
Q ss_pred CCceeEEEEECCCCceeeeeC---CCCceEEeeccCcccceEEEEE
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFP---LDLGQITHISGRRKYNEVFYGF 415 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~---~~~g~v~~~~~~~d~~~l~~~~ 415 (734)
.....|.++-+.+-..-.-++ .+.+.+.++.++|.+..+++..
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 655666666664443322222 2356778888999888777653
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=81.59 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=139.3
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc------------cccccc-ccCeeEEEcCCcEEEEEE
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP------------EVLKNV-KFPSISWTHDHKGFFYNQ 206 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~------------~~~~~~-~~~~~~wSpDg~~l~y~~ 206 (734)
....+.+.+|||.|..|+..+ |+ .+..|+|-++-+... .+.+.+ ....-.|.|+.+..|.+.
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvs---g~--aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVS---GS--AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cccccceeeecCCCCeEEEEe---cC--cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 345688999999999988765 32 567777766533211 122222 124568999999998887
Q ss_pred EecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe-cCCCC--eeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC
Q psy4818 207 YCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE-FPNGR--SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH 283 (734)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~-~~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~ 283 (734)
..+ ..+.+|++.....+ +.|+. .+... ......+|+|||++||-- .....|-+|+..
T Consensus 288 s~D---------------gtlRiWdv~~~k~q-~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag----c~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 288 SYD---------------GTLRIWDVNNTKSQ-LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG----CLDGSIQIWDKG 347 (641)
T ss_pred cCC---------------CcEEEEecCCchhh-eeEEeeccCCCcccCceeeecCCCcchhhhc----ccCCceeeeecC
Confidence 543 25677776654433 23332 22111 123468999999998733 233567777764
Q ss_pred CCCCCcccCCCCceeeecccc---ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCC--CCceEeecCCCCceeEE
Q psy4818 284 SLPDGKISGKFPLKTVIPGMD---HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCE--KNWKTLIPEDENRTLDV 357 (734)
Q Consensus 284 ~~~~~~l~~~~~~~~l~~~~~---~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~~~~ 357 (734)
+ ... .+...+-.... ....+ ||.||+.|+-.+. +..|-+||+...+. ..+..|...- ....
T Consensus 348 ~-~~v-----~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~---~~td 414 (641)
T KOG0772|consen 348 S-RTV-----RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPF---PGTD 414 (641)
T ss_pred C-ccc-----ccceEeeeccCCCCceeEEEeccccchhhhccC----CCceeeeeccccccchhhhcCCCccC---CCCc
Confidence 4 110 11111111111 22333 9999998874333 34588999976431 0111121111 1122
Q ss_pred EEEeeCCEEEEEEEeC----CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEec
Q psy4818 358 VAAVANNKLIVHYIQN----VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 358 ~~~~~~~~l~~~~~~~----~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss 417 (734)
+.+..++.|+++...- +...|+.+|..+-+.+.+|..+..+|....|.|.-+.+++....
T Consensus 415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC
Confidence 3333347888776532 23479999987777777887776677788888888777766544
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=87.25 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=60.0
Q ss_pred HHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhH----HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHH-
Q psy4818 510 RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDD----FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA- 584 (734)
Q Consensus 510 ~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D----~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~- 584 (734)
+.++|.++|+.|++++.|.-+... ....++| +.+|++.+.+. +..++|-++|+|+||.++++
T Consensus 239 lVr~lv~qG~~VflIsW~nP~~~~-----------r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~ 305 (560)
T TIGR01839 239 FVQYCLKNQLQVFIISWRNPDKAH-----------REWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAAL 305 (560)
T ss_pred HHHHHHHcCCeEEEEeCCCCChhh-----------cCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHH
Confidence 567777789999999998733221 2222334 44566665443 56678999999999999997
Q ss_pred ---HHhcCCC-ceeEEEEcCCcchhc
Q psy4818 585 ---CLNQRPE-LYGAALILVGALDML 606 (734)
Q Consensus 585 ---~~~~~p~-~~~a~v~~~~~~d~~ 606 (734)
+++++++ .++.++..+..+|+.
T Consensus 306 ~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 306 VGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred HHHHHhcCCCCceeeEEeeecccccC
Confidence 6777786 689888877766643
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=79.93 Aligned_cols=213 Identities=13% Similarity=0.169 Sum_probs=112.7
Q ss_pred EcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCC----CCCchhhhcc
Q psy4818 465 RSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGG----ELGEDWHNAG 540 (734)
Q Consensus 465 ~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~----~~g~~~~~~~ 540 (734)
.-.+|+.|..|--.|+.- ...++|+||..-| |+..+. .|. ..+.+|+.+||.|+.+|.--+= |-=.+|...
T Consensus 8 ~~~~~~~I~vwet~P~~~-~~~~~~tiliA~G-f~rrmd-h~a-gLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms- 82 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNN-EPKRNNTILIAPG-FARRMD-HFA-GLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMS- 82 (294)
T ss_dssp EETTTEEEEEEEE---TT-S---S-EEEEE-T-T-GGGG-GGH-HHHHHHHTTT--EEEE---B-------------HH-
T ss_pred EcCCCCEEEEeccCCCCC-CcccCCeEEEecc-hhHHHH-HHH-HHHHHHhhCCeEEEeccccccccCCCCChhhcchH-
Confidence 446899999999999873 4567788888765 455543 343 4567888899999999864321 111111110
Q ss_pred ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccc
Q psy4818 541 RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620 (734)
Q Consensus 541 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~ 620 (734)
...+|+..+++||...|. .+++++-.|.-|-++...++. ++ ..-.|..+|++|+..+.....+..+...
T Consensus 83 ------~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~~ 151 (294)
T PF02273_consen 83 ------IGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQL 151 (294)
T ss_dssp ------HHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS
T ss_pred ------HhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhhc
Confidence 124688899999997764 569999999999999999985 55 4788888899998766432222211110
Q ss_pred c--CCCCC---------HHHH-HHHH--hCCc----cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 621 F--GSPNN---------KTHF-HNLL--SYSP----LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 621 ~--g~~~~---------~~~~-~~~~--~~sp----~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
. +.|.+ .+.| .... .+.+ ...++. ...| ++..++..|..|...+..++...+..
T Consensus 152 ~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~----l~iP-~iaF~A~~D~WV~q~eV~~~~~~~~s--- 223 (294)
T PF02273_consen 152 PIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKR----LSIP-FIAFTANDDDWVKQSEVEELLDNINS--- 223 (294)
T ss_dssp -GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT------S--EEEEEETT-TTS-HHHHHHHHTT-TT---
T ss_pred chhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhh----CCCC-EEEEEeCCCccccHHHHHHHHHhcCC---
Confidence 0 11111 1111 1111 1111 223443 6677 99999999999988877766655433
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCch
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPL 707 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (734)
..+.+...+|++|-.....
T Consensus 224 ------~~~klysl~Gs~HdL~enl 242 (294)
T PF02273_consen 224 ------NKCKLYSLPGSSHDLGENL 242 (294)
T ss_dssp --------EEEEEETT-SS-TTSSH
T ss_pred ------CceeEEEecCccchhhhCh
Confidence 3578888899999987654
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG3847|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=78.28 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCC--------------CCchhhhcccccc--C---
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGE--------------LGEDWHNAGRLLK--K--- 545 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~--------------~g~~~~~~~~~~~--~--- 545 (734)
++++|+||+.||-.+++. .|+..+.. |+.+||+|+++..|-.+- +-..|..--.... +
T Consensus 115 ~~k~PvvvFSHGLggsRt--~YSa~c~~-LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGSRT--LYSAYCTS-LASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCccEEEEecccccchh--hHHHHhhh-HhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 678999999999755543 35555544 567899999999997321 1122322110000 0
Q ss_pred -CC-----chhHHHHHHHHHHH---------------------cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEE
Q psy4818 546 -QN-----CFDDFQAAAEYMIN---------------------KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI 598 (734)
Q Consensus 546 -~~-----~~~D~~~~~~~l~~---------------------~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~ 598 (734)
+| -...+..|++-|.+ ++.+|..+++|+|||.||..+++....+. .|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeee
Confidence 01 13455555555433 23467889999999999999999988654 6888886
Q ss_pred cC
Q psy4818 599 LV 600 (734)
Q Consensus 599 ~~ 600 (734)
.-
T Consensus 271 lD 272 (399)
T KOG3847|consen 271 LD 272 (399)
T ss_pred ee
Confidence 54
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-05 Score=76.43 Aligned_cols=205 Identities=11% Similarity=0.062 Sum_probs=107.5
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeE--------EEcCCcEEEEEEEecCCCCCCC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSIS--------WTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~--------wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
.+.+|||||+|.+.-- .. ...+-|+|+++++.+... ..++. ..+. -+.||+.+.++...+
T Consensus 109 ~~~ls~dgk~l~V~n~-~p--~~~V~VvD~~~~kvv~ei~vp~~~-~vy~t~e~~~~~~~~Dg~~~~v~~d~~------- 177 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQF-SP--SPAVGVVDLEGKAFVRMMDVPDCY-HIFPTANDTFFMHCRDGSLAKVGYGTK------- 177 (352)
T ss_pred eEEECCCCCEEEEecC-CC--CCEEEEEECCCCcEEEEEeCCCCc-EEEEecCCccEEEeecCceEEEEecCC-------
Confidence 6899999998775432 21 257999999999865421 22221 1222 245555444433211
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
+ ++... ...+|...+++ .+..+.+++ ||++++++. + ..|+++|+.+..... ..+
T Consensus 178 -----g---~~~~~--------~~~vf~~~~~~-v~~rP~~~~~dg~~~~vs~-e----G~V~~id~~~~~~~~---~~~ 232 (352)
T TIGR02658 178 -----G---NPKIK--------PTEVFHPEDEY-LINHPAYSNKSGRLVWPTY-T----GKIFQIDLSSGDAKF---LPA 232 (352)
T ss_pred -----C---ceEEe--------eeeeecCCccc-cccCCceEcCCCcEEEEec-C----CeEEEEecCCCccee---cce
Confidence 0 11111 11222211111 122234566 888877543 2 689999976622111 112
Q ss_pred ceeeecc------ccceEE--EEEecCCeEEEEeCCC------CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe
Q psy4818 296 LKTVIPG------MDHHHE--IIANNGPELIVKTTKN------APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV 361 (734)
Q Consensus 296 ~~~l~~~------~~~~~~--~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 361 (734)
|..+... +..++. .+++||+++|++.... .+...|..+|.++.+ ....++-. .....+.+.
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i~vG--~~~~~iavS 307 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKIELG--HEIDSINVS 307 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEEeCC--CceeeEEEC
Confidence 2222111 112222 2889999999865421 122469999998765 23333322 122344444
Q ss_pred eCCE-EEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 362 ANNK-LIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 362 ~~~~-l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
.+++ +++..+. ....|.++|.++++.++.+
T Consensus 308 ~Dgkp~lyvtn~-~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 308 QDAKPLLYALST-GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCeEEEEeCC-CCCcEEEEECcCCeEEeee
Confidence 4445 5555443 2356999999999887777
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=82.03 Aligned_cols=208 Identities=16% Similarity=0.110 Sum_probs=117.7
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCC-----CCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEE
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLT-----GSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 171 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~ 171 (734)
++-|+.+..+. +..|..|+=|+... .+-+.+.|.+ ..+++...+..-.|.|+.+-...+.+..| +++
T Consensus 223 s~Tg~~iLvvs---g~aqakl~DRdG~~~~e~~KGDQYI~Dm~-nTKGHia~lt~g~whP~~k~~FlT~s~Dg----tlR 294 (641)
T KOG0772|consen 223 SVTGDQILVVS---GSAQAKLLDRDGFEIVEFSKGDQYIRDMY-NTKGHIAELTCGCWHPDNKEEFLTCSYDG----TLR 294 (641)
T ss_pred cCCCCeEEEEe---cCcceeEEccCCceeeeeeccchhhhhhh-ccCCceeeeeccccccCcccceEEecCCC----cEE
Confidence 34566555444 23355565544221 1123344543 23556677889999999999888887665 589
Q ss_pred EEECCCCC-cccc------cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCe-eEE
Q psy4818 172 IKDVDTGK-DYPE------VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDI-PVV 243 (734)
Q Consensus 172 v~dl~~g~-~~~~------~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~-~v~ 243 (734)
+||+..-+ .++. ....+.....+|+|||+.|+-...+. .|-.|+.+....... .+-
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG----------------SIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG----------------SIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC----------------ceeeeecCCcccccceEee
Confidence 99987543 1111 11222346789999999987766543 455666554332221 222
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCC
Q psy4818 244 EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTK 323 (734)
Q Consensus 244 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 323 (734)
.......-+.++.||+||++|+ ++ +....+.+|||.. ...+|. .+..|...+......||||.+ |++....
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~Ll---SR-g~D~tLKvWDLrq-~kkpL~---~~tgL~t~~~~tdc~FSPd~k-li~TGtS 429 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLL---SR-GFDDTLKVWDLRQ-FKKPLN---VRTGLPTPFPGTDCCFSPDDK-LILTGTS 429 (641)
T ss_pred eccCCCCceeEEEeccccchhh---hc-cCCCceeeeeccc-cccchh---hhcCCCccCCCCccccCCCce-EEEeccc
Confidence 2211112456899999999998 23 3447899999987 333331 122233333333345999965 5554332
Q ss_pred ---CCCCceEEEEecCC
Q psy4818 324 ---NAPKGKVVTINLNN 337 (734)
Q Consensus 324 ---~~~~~~l~~~d~~~ 337 (734)
+.....|+.+|..+
T Consensus 430 ~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccCCCCCceEEEEeccc
Confidence 11233577777654
|
|
| >KOG1553|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=85.15 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=96.0
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccC-CCCCchhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGG-GELGEDWH 537 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-~~~g~~~~ 537 (734)
-.+.++++.||.+|...++.......+...-+|++.-|.-|.-...- +..-+ +.||.|+-.|.+|- |.-|
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEvG~----m~tP~-~lgYsvLGwNhPGFagSTG---- 284 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEVGV----MNTPA-QLGYSVLGWNHPGFAGSTG---- 284 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccceEeee----ecChH-HhCceeeccCCCCccccCC----
Confidence 46788889999999988886443222334557788777433221111 11223 36999999999982 2223
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
.....++..-..+++++.++.--..++.|.++|||-||+.+++++..+||. +|+|+.+-|-|++-.
T Consensus 285 ----~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-kavvLDAtFDDllpL 350 (517)
T KOG1553|consen 285 ----LPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-KAVVLDATFDDLLPL 350 (517)
T ss_pred ----CCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-eEEEeecchhhhhhH
Confidence 123455666677788888887555778899999999999999999999986 999999998887643
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.1e-06 Score=87.83 Aligned_cols=195 Identities=10% Similarity=0.095 Sum_probs=117.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+.+.+||||.++|.= .+|...+++|.+.+-..+-.-.++ ..+..+.|+|-| .||.+.-.
T Consensus 452 GPVyg~sFsPd~rfLlS-----cSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~----------- 513 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLS-----CSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASH----------- 513 (707)
T ss_pred Cceeeeeecccccceee-----ccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCC-----------
Confidence 45778999999998873 345578899998887654322222 223567788876 55555311
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
....+|| ..+...+. .||...-. -+..+.|.|+..|++ .++....+.+||..+|. ..+++
T Consensus 514 -D~tArLW--s~d~~~Pl--Rifaghls--DV~cv~FHPNs~Y~a----TGSsD~tVRlWDv~~G~---------~VRiF 573 (707)
T KOG0263|consen 514 -DQTARLW--STDHNKPL--RIFAGHLS--DVDCVSFHPNSNYVA----TGSSDRTVRLWDVSTGN---------SVRIF 573 (707)
T ss_pred -Cceeeee--ecccCCch--hhhccccc--ccceEEECCcccccc----cCCCCceEEEEEcCCCc---------EEEEe
Confidence 1122444 33333322 34433211 123478999999998 23334789999998842 24455
Q ss_pred ccccce-EEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeE
Q psy4818 301 PGMDHH-HEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378 (734)
Q Consensus 301 ~~~~~~-~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 378 (734)
.+.... ... +||+|++|.- ++..+.|..||+.++.. +..+..+ ...+..+.+..++.++++...+ ..|
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaS----g~ed~~I~iWDl~~~~~--v~~l~~H--t~ti~SlsFS~dg~vLasgg~D--nsV 643 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLAS----GDEDGLIKIWDLANGSL--VKQLKGH--TGTIYSLSFSRDGNVLASGGAD--NSV 643 (707)
T ss_pred cCCCCceEEEEEcCCCceEee----cccCCcEEEEEcCCCcc--hhhhhcc--cCceeEEEEecCCCEEEecCCC--CeE
Confidence 444333 333 9999987773 23356799999988652 3444445 3445556555546666665443 679
Q ss_pred EEEECC
Q psy4818 379 DLHDLN 384 (734)
Q Consensus 379 ~~~dl~ 384 (734)
.+||+.
T Consensus 644 ~lWD~~ 649 (707)
T KOG0263|consen 644 RLWDLT 649 (707)
T ss_pred EEEEch
Confidence 999984
|
|
| >KOG2564|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=83.65 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=76.0
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..+.+.++..++ ++..++-.|. ....|++++.|||..+.. +|.....++..+.-..++++|.||+|+---+
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~----~t~gpil~l~HG~G~S~L--SfA~~a~el~s~~~~r~~a~DlRgHGeTk~~-- 119 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPS----ATEGPILLLLHGGGSSAL--SFAIFASELKSKIRCRCLALDLRGHGETKVE-- 119 (343)
T ss_pred cccccccCCCcc-eEEEEEecCC----CCCccEEEEeecCcccch--hHHHHHHHHHhhcceeEEEeeccccCccccC--
Confidence 445666665554 4666665554 356799999999855544 3444334444444567799999998764311
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 588 (734)
............|+.+.++++... ++..|.++||||||.++...+..
T Consensus 120 -~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 120 -NEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred -ChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 111112223457888888777532 45579999999999999887764
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.7e-05 Score=76.09 Aligned_cols=254 Identities=12% Similarity=0.091 Sum_probs=149.2
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCC-------CC-
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDIN-------GT- 213 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~-------~~- 213 (734)
..+..+.|+-||..||+.+ +...+++|+..++...........+.++.|+.+|.+|+-...+... +.
T Consensus 236 kdVT~L~Wn~~G~~LatG~-----~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGS-----EDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CCcceEEecCCCCeEEEee-----cCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 4578899999999999865 3457999998776654433333334688999999888765543311 00
Q ss_pred -------CCC-Ccc---------cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCce
Q psy4818 214 -------ADG-TET---------TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD 276 (734)
Q Consensus 214 -------~~~-~~~---------~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 276 (734)
+.. -+- .......|++..++...+.. .+.. +..-+..+.|.|-|+.|+-.+ +...
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~--t~~G--H~g~V~alk~n~tg~LLaS~S----dD~T 382 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK--TFIG--HHGEVNALKWNPTGSLLASCS----DDGT 382 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce--eeec--ccCceEEEEECCCCceEEEec----CCCe
Confidence 000 000 01122356777776654332 2222 223456789999999887322 2356
Q ss_pred EEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCe-------EEEEeCCCCCCceEEEEecCCCCCCCceEeec
Q psy4818 277 LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPE-------LIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348 (734)
Q Consensus 277 i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~-------l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 348 (734)
+.+|..... .....+-......+.. |+|+|.- +.+++. ..+..|-.||+..+.+ .-.+..
T Consensus 383 lkiWs~~~~--------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa--s~dstV~lwdv~~gv~--i~~f~k 450 (524)
T KOG0273|consen 383 LKIWSMGQS--------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA--SFDSTVKLWDVESGVP--IHTLMK 450 (524)
T ss_pred eEeeecCCC--------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe--ecCCeEEEEEccCCce--eEeecc
Confidence 777776541 1122222333344443 7776541 111111 2244588888887652 334445
Q ss_pred CCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEe
Q psy4818 349 EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCN 428 (734)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d 428 (734)
+. ..+-.+.+..++..+++.+.+ ..|.+|+..+|+..+.... .+.|..+.++.+++++...++.- .+..+|
T Consensus 451 H~--~pVysvafS~~g~ylAsGs~d--g~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~----~vcvld 521 (524)
T KOG0273|consen 451 HQ--EPVYSVAFSPNGRYLASGSLD--GCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDG----SVCVLD 521 (524)
T ss_pred CC--CceEEEEecCCCcEEEecCCC--CeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCC----CceEEE
Confidence 54 334455555546666666555 4788999999998777764 46677899999998887776542 345555
Q ss_pred C
Q psy4818 429 I 429 (734)
Q Consensus 429 ~ 429 (734)
+
T Consensus 522 l 522 (524)
T KOG0273|consen 522 L 522 (524)
T ss_pred e
Confidence 4
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=91.26 Aligned_cols=114 Identities=10% Similarity=0.001 Sum_probs=76.3
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHH-HHHh-cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCM-FLRH-FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~-~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 562 (734)
+...|++|++||.........|...+.. ++.+ ..+.|+++|.+|++... +..+. ..-...-+++.+.+++|.+.
T Consensus 38 n~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~--~~t~~vg~~la~lI~~L~~~ 113 (442)
T TIGR03230 38 NHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSA--AYTKLVGKDVAKFVNWMQEE 113 (442)
T ss_pred CCCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Ccccc--ccHHHHHHHHHHHHHHHHHh
Confidence 3457899999997654332345544433 3322 26999999999865321 11111 01111224566677777655
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 563 ~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
...+.+++.++|||+||.+++.++.+.|+++..++...|.
T Consensus 114 ~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 114 FNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred hCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 3467889999999999999999999989989999887764
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-06 Score=78.19 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=109.5
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC-
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY- 564 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~- 564 (734)
.+.-++.+-|-|.+...-..| ...|.. -+.++.+.++| .|.. .+...++|+.+.++.|...-.
T Consensus 6 ~~~~L~cfP~AGGsa~~fr~W----~~~lp~-~iel~avqlPG---R~~r--------~~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 6 ARLRLFCFPHAGGSASLFRSW----SRRLPA-DIELLAVQLPG---RGDR--------FGEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCceEEEecCCCCCHHHHHHH----HhhCCc-hhheeeecCCC---cccc--------cCCcccccHHHHHHHHHHHhcc
Confidence 344466666666443332222 233332 47799999999 3322 223335677777777766532
Q ss_pred -CCCCcEEEEEcChHHHHHHHHHhcC------CCceeEEEEcCCcchhcccc-ccccCccc---cccc-CCC----CCHH
Q psy4818 565 -TKPKYITIMGGSNGGLLVGACLNQR------PELYGAALILVGALDMLRFN-KFTIAYYS---ESEF-GSP----NNKT 628 (734)
Q Consensus 565 -~d~~ri~i~G~S~GG~~~~~~~~~~------p~~~~a~v~~~~~~d~~~~~-~~~~~~~~---~~~~-g~~----~~~~ 628 (734)
.--...+++||||||.++.-++.+. |..|=..-+.+|..+-.... .... ..+ ..++ |.| +++|
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D-~~~l~~l~~lgG~p~e~led~E 148 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDD-ADFLADLVDLGGTPPELLEDPE 148 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCH-HHHHHHHHHhCCCChHHhcCHH
Confidence 2223699999999999999987542 32232333445522221111 0000 001 1122 444 3344
Q ss_pred HHHHH--------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCC
Q psy4818 629 HFHNL--------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAG 700 (734)
Q Consensus 629 ~~~~~--------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~g 700 (734)
.+..+ ....-|.....+ .+.+| +.++.|++|..|...+...|.+.. +..+.+.+++ +|
T Consensus 149 l~~l~LPilRAD~~~~e~Y~~~~~~--pl~~p-i~~~~G~~D~~vs~~~~~~W~~~t----------~~~f~l~~fd-Gg 214 (244)
T COG3208 149 LMALFLPILRADFRALESYRYPPPA--PLACP-IHAFGGEKDHEVSRDELGAWREHT----------KGDFTLRVFD-GG 214 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCC--CcCcc-eEEeccCcchhccHHHHHHHHHhh----------cCCceEEEec-Cc
Confidence 32211 111122222221 27888 999999999998876655555443 4467888887 59
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 701 HGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 701 H~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
|++..... ..+++++.++++
T Consensus 215 HFfl~~~~------~~v~~~i~~~l~ 234 (244)
T COG3208 215 HFFLNQQR------EEVLARLEQHLA 234 (244)
T ss_pred ceehhhhH------HHHHHHHHHHhh
Confidence 99875432 234566666664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00019 Score=75.42 Aligned_cols=116 Identities=12% Similarity=0.138 Sum_probs=68.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC-CCccc--ccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-GKDYP--EVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~-g~~~~--~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+.++|||++|+.+.... ..|.++++++ |.... ... .........++|||+.++.....
T Consensus 82 p~~i~~~~~g~~l~v~~~~~----~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~----------- 146 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNA----NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK----------- 146 (330)
T ss_pred ceEEEECCCCCEEEEEEcCC----CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----------
Confidence 35789999999877654322 4688888863 32211 111 11122467899999888765432
Q ss_pred cccCCcEEEEEECCCCCC-CC--eeEEe--cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQD-KD--IPVVE--FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~-~~--~~v~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
...|+++++.+... .. ..... ....+ ..+.++|||++++.... ..+.|.+++++.
T Consensus 147 ----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p---~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~ 206 (330)
T PRK11028 147 ----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP---RHMVFHPNQQYAYCVNE---LNSSVDVWQLKD 206 (330)
T ss_pred ----CCEEEEEEECCCCcccccCCCceecCCCCCC---ceEEECCCCCEEEEEec---CCCEEEEEEEeC
Confidence 23688888865221 00 00011 11122 35799999999876532 226788888764
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=9e-05 Score=72.04 Aligned_cols=225 Identities=12% Similarity=0.168 Sum_probs=138.1
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
+++.-+.|--....+.+++. . +..+|+..++.+.+.++--.+.. .+.++.-||-+..+.-.+.|.
T Consensus 57 yG~~~~~Fth~~~~~i~sSt-k--~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~----------- 122 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSST-K--EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK----------- 122 (311)
T ss_pred ccccEEEEecCCceEEEccC-C--CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCC-----------
Confidence 45566677666666777665 2 33689999999988765433322 346888899887777666544
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|++|++.+..-+-++.... .+ -+++.|.|-.+|+... ...|.++|+..-. ..|.....
T Consensus 123 -----tvrLWDlR~~~cqg~l~~~~--~p----i~AfDp~GLifA~~~~----~~~IkLyD~Rs~d------kgPF~tf~ 181 (311)
T KOG1446|consen 123 -----TVRLWDLRVKKCQGLLNLSG--RP----IAAFDPEGLIFALANG----SELIKLYDLRSFD------KGPFTTFS 181 (311)
T ss_pred -----eEEeeEecCCCCceEEecCC--Cc----ceeECCCCcEEEEecC----CCeEEEEEecccC------CCCceeEc
Confidence 78999998765443332222 12 3789999987775432 2488999987622 23333322
Q ss_pred --ccccceEE-E-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 301 --PGMDHHHE-I-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 301 --~~~~~~~~-~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
.+....+. . |||||+.|++.++. ..++++|.=.+....-...-+......++....++ +.+++....+ .
T Consensus 182 i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd-s~Fvl~gs~d--g 254 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD-SKFVLSGSDD--G 254 (311)
T ss_pred cCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC-CcEEEEecCC--C
Confidence 12233343 2 99999999988775 24788886555410001111222122233343344 7777777666 4
Q ss_pred eEEEEECCCCceeeeeCCC-CceEEeeccCccc
Q psy4818 377 VMDLHDLNTGKRLHSFPLD-LGQITHISGRRKY 408 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~ 408 (734)
.|.+|++++|+....+..+ .+.+..+-++|..
T Consensus 255 ~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 255 TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred cEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 7999999999877777665 4445555566654
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=80.98 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=74.7
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch-----hhhc-----cc
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED-----WHNA-----GR 541 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~-----~~~~-----~~ 541 (734)
....++.|+.. .....|++|++.|-...............++. .|++-+++..+- ||.. +... ..
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~-~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl 151 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLK-EGIASLILENPY---YGQRKPKDQRRSSLRNVSDL 151 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHH-cCcceEEEeccc---ccccChhHhhcccccchhHH
Confidence 34566678765 23568999998885332221111111234444 599999887654 4321 1100 00
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
...+...+.+....+.|+.++|+ .++++.|.||||.+|..+++..|.....+-+.
T Consensus 152 ~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~l 206 (348)
T PF09752_consen 152 FVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCL 206 (348)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEee
Confidence 11233456777788999998876 48999999999999999999988764444333
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00013 Score=72.16 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=76.3
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
++..+.+++|.+||..++-++-. + ..|.+||+++|..++.. .+...++.+.|||||..|+-.+.+.
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~g--s--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da--------- 260 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFG--S--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA--------- 260 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccC--c--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc---------
Confidence 35668899999999998866542 2 67999999999866544 2333346889999999998887653
Q ss_pred ccccCCcEEE-EEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 219 TTAHMGQKIY-YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 219 ~~~~~~~~l~-~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
..+|| .+.--+.. .-+. .++......|||+|++|+|..+.. ..||.+...+
T Consensus 261 -----vfrlw~e~q~wt~e---rw~l----gsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~ 312 (445)
T KOG2139|consen 261 -----VFRLWQENQSWTKE---RWIL----GSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDG 312 (445)
T ss_pred -----eeeeehhcccceec---ceec----cCCceeeeeecCCCCEEEEEEcCC---ceEEEEeecC
Confidence 12344 11111111 1111 233566789999999999986532 4566655443
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=74.75 Aligned_cols=229 Identities=13% Similarity=0.156 Sum_probs=143.4
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+.+..|=.||+.+|- |++...+.|+|..+...+.... .........|+|++++++....|+.
T Consensus 70 ~v~s~~fR~DG~Llaa-----GD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~----------- 133 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAA-----GDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK----------- 133 (487)
T ss_pred ceeEEEeecCCeEEEc-----cCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc-----------
Confidence 3678999999999883 5566789999966643332211 1112246678999998888776542
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
.+.+|++.+.. + ..+...+..++...+|+|-...|+++.+ ....|.+||+... ..+..-.+
T Consensus 134 ----v~k~~d~s~a~---v-~~~l~~htDYVR~g~~~~~~~hivvtGs---YDg~vrl~DtR~~--------~~~v~eln 194 (487)
T KOG0310|consen 134 ----VVKYWDLSTAY---V-QAELSGHTDYVRCGDISPANDHIVVTGS---YDGKVRLWDTRSL--------TSRVVELN 194 (487)
T ss_pred ----eEEEEEcCCcE---E-EEEecCCcceeEeeccccCCCeEEEecC---CCceEEEEEeccC--------CceeEEec
Confidence 56778887764 2 4444555668889999999999998654 3367899998771 12222222
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-CCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
........ +-|.|+.|+- .++ ..+-+||+.++. +.+.... ....+....+..+++-+++..-| .++.
T Consensus 195 hg~pVe~vl~lpsgs~ias----AgG-n~vkVWDl~~G~----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--~~VK 263 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIAS----AGG-NSVKVWDLTTGG----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD--RHVK 263 (487)
T ss_pred CCCceeeEEEcCCCCEEEE----cCC-CeEEEEEecCCc----eehhhhhcccceEEEEEeecCCceEeecccc--cceE
Confidence 22222222 5677776652 122 348889998664 3333322 23445555555445666666555 3677
Q ss_pred EEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecC
Q psy4818 380 LHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSF 418 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~ 418 (734)
+||+.+=+.+.....+ +.|-+++.++++..+++..++.
T Consensus 264 Vfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 264 VFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEEccceEEEEeeecc-cceeeEEecCCCceEEEecccc
Confidence 7886455554555444 4566888889888888876654
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00068 Score=65.54 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=79.3
Q ss_pred CCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc-c-cccccccccCeeEEEcCCcEEEEEEEecC
Q psy4818 133 PNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD-Y-PEVLKNVKFPSISWTHDHKGFFYNQYCDI 210 (734)
Q Consensus 133 ~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~-~-~~~~~~~~~~~~~wSpDg~~l~y~~~~~~ 210 (734)
|...-.++...+....|+|||..+| +|.-..+|++|++.+... . ........+..+.|++|++.|+-+..|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~a-----SgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk- 112 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFA-----SGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK- 112 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEe-----ecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc-
Confidence 3333345556688899999999988 333457899999765431 1 1111222236789999999888776543
Q ss_pred CCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 211 NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
+|+.|+..+++. ++....+..+...+.-+.-|-.|+.+.+ +...+.+||+.+
T Consensus 113 ---------------~v~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~Sgs---dD~t~kl~D~R~ 164 (338)
T KOG0265|consen 113 ---------------TVRGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGS---DDGTLKLWDIRK 164 (338)
T ss_pred ---------------eEEEEeccccee----eehhccccceeeecCccccCCeEEEecC---CCceEEEEeecc
Confidence 789999988763 3333334445555554555667665443 336788889875
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-05 Score=76.24 Aligned_cols=130 Identities=15% Similarity=0.061 Sum_probs=88.2
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
...+.+.+.+|..+..--++-.....+.+..+||-+||.||+...-.| +...|.+.|..++.+||+|.+.-
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH~DFkY---i~~~l~~~~iR~I~iN~PGf~~t------ 76 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSHNDFKY---IRPPLDEAGIRFIGINYPGFGFT------ 76 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecCCCCCCceeEEEecCCCCCccchhh---hhhHHHHcCeEEEEeCCCCCCCC------
Confidence 344566677787777666665443333445689999999999876443 45778889999999999994421
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.+.. .-...-.+-..-++.|.++--++ +++.++|||.|+-.++.++..+| . .++++..|
T Consensus 77 ~~~~-~~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~-~-~g~~lin~ 135 (297)
T PF06342_consen 77 PGYP-DQQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP-L-HGLVLINP 135 (297)
T ss_pred CCCc-ccccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc-c-ceEEEecC
Confidence 1111 11222334445555566654455 78999999999999999999987 3 46666665
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-05 Score=77.35 Aligned_cols=228 Identities=13% Similarity=0.227 Sum_probs=137.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
+-.+.||-|...|| +|+....|.||.+.+|.++..-. ....+..+.||.|+..|+-.+++.
T Consensus 266 Vlci~FSRDsEMlA-----sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~------------ 328 (508)
T KOG0275|consen 266 VLCISFSRDSEMLA-----SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQ------------ 328 (508)
T ss_pred eEEEeecccHHHhh-----ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccc------------
Confidence 55788999999988 45555679999999999765211 111235789999999998877643
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
.+.+|-+.++. ++-+-..+..++..+.|++||.+|+-.++ ...+.+|+..+ +.++.. +..+-.
T Consensus 329 ----tvRiHGlKSGK----~LKEfrGHsSyvn~a~ft~dG~~iisaSs----DgtvkvW~~Kt--teC~~T---fk~~~~ 391 (508)
T KOG0275|consen 329 ----TVRIHGLKSGK----CLKEFRGHSSYVNEATFTDDGHHIISASS----DGTVKVWHGKT--TECLST---FKPLGT 391 (508)
T ss_pred ----eEEEeccccch----hHHHhcCccccccceEEcCCCCeEEEecC----CccEEEecCcc--hhhhhh---ccCCCC
Confidence 67778776653 22233345667788999999999874332 25688899887 334321 111111
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC--CCceeEEEEEeeCCEEEEEEEeCCceeE
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED--ENRTLDVVAAVANNKLIVHYIQNVRSVM 378 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l 378 (734)
+. ....+ .-|.+-.-+++.|+. ..+|.+++.+.. ++....+. .+..+.....+.++.+|... ++ ..+
T Consensus 392 d~-~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQv---VrsfsSGkREgGdFi~~~lSpkGewiYcig-ED--~vl 461 (508)
T KOG0275|consen 392 DY-PVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQV---VRSFSSGKREGGDFINAILSPKGEWIYCIG-ED--GVL 461 (508)
T ss_pred cc-cceeEEEcCCCCceEEEEcCC---CeEEEEeccceE---EeeeccCCccCCceEEEEecCCCcEEEEEc-cC--cEE
Confidence 11 11111 335444455667763 358899887643 23333322 13344555556655666544 44 368
Q ss_pred EEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEe
Q psy4818 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 379 ~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~s 416 (734)
|-++..+|+..+.++...-.+.++.-.|..+ ++.+|+
T Consensus 462 YCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN-llAsYs 498 (508)
T KOG0275|consen 462 YCFSVLSGKLERTLPVHEKDVIGLTHHPHQN-LLASYS 498 (508)
T ss_pred EEEEeecCceeeeeecccccccccccCcccc-hhhhhc
Confidence 8888878987677765433344565555443 433443
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=75.88 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHcCCC--CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhc-ccc-ccc------------
Q psy4818 549 FDDFQAAAEYMINKKYT--KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML-RFN-KFT------------ 612 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~--d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~-~~~-~~~------------ 612 (734)
.-|++.|+.+|+++-.. +.-++..+|+|+||||+..++.-+|..|.+++-.++.+-.. ++. ...
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 46888888888876322 23489999999999999999999999999999776643221 110 000
Q ss_pred -----------cCcccccccCCCC--CHHHHHHHHhCCccCCCCCCCCCc-cCCcEEEEecCCCCCCCChHHHHHHHHHH
Q psy4818 613 -----------IAYYSESEFGSPN--NKTHFHNLLSYSPLHNIKVPPNNT-QYPATLVLTGDHDDRVPPLHSYKFIATLQ 678 (734)
Q Consensus 613 -----------~~~~~~~~~g~~~--~~~~~~~~~~~sp~~~~~~p~~~~-~~P~~Li~~g~~D~~v~~~~~~~~~~~L~ 678 (734)
....|...-+.|. ..+.+ .++..--..++.... .. +-|-....|+..|+.+|+.+-.++++.|+
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~-~IR~iLn~~HL~iqs-~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~ 320 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARY-IIRSILNPDHLKIQS-NYNKKIIYVSYHSIKDDLAPAEDKEELYEILK 320 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHH-HHHHhcChHHHHHHH-hcccceEEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 0112333223331 11111 122111111111000 00 11336778999999999999999999999
Q ss_pred hhhCCCCCCCCcEEEEEe-----------CCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 679 EKIGSLPYQKNPLLLRVE-----------QDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~-----------~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+. |-.++++.. .+-.||++-+. .......+.-+.+.+
T Consensus 321 ~l-------gfda~l~lIkdes~iDGkfIKnl~HGmgis~---k~Lf~KeLp~~lek~ 368 (403)
T PF11144_consen 321 NL-------GFDATLHLIKDESEIDGKFIKNLEHGMGISD---KALFKKELPLMLEKL 368 (403)
T ss_pred Hc-------CCCeEEEEecChhhccchheeccccCCCCCH---HHHHHHHhHHHHHHh
Confidence 99 888888777 44578876442 233444455555554
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00012 Score=79.97 Aligned_cols=174 Identities=10% Similarity=0.123 Sum_probs=93.9
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD 304 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~ 304 (734)
.|.+|.++... =+.+|.. ..|+..++|.| |.+|++ ++.-...+.+|++... ++ ..|. +-.+
T Consensus 391 TVRLWh~~~~~--CL~~F~H---ndfVTcVaFnPvDDryFi----SGSLD~KvRiWsI~d~---~V---v~W~---Dl~~ 452 (712)
T KOG0283|consen 391 TVRLWHPGRKE--CLKVFSH---NDFVTCVAFNPVDDRYFI----SGSLDGKVRLWSISDK---KV---VDWN---DLRD 452 (712)
T ss_pred cEEeecCCCcc--eeeEEec---CCeeEEEEecccCCCcEe----ecccccceEEeecCcC---ee---Eeeh---hhhh
Confidence 67888887653 4557764 34899999999 566654 2233368888988761 11 1111 1112
Q ss_pred ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC-CceEeecCC---CCceeEEEEEeeC--CEEEEEEEeCCcee
Q psy4818 305 HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK-NWKTLIPED---ENRTLDVVAAVAN--NKLIVHYIQNVRSV 377 (734)
Q Consensus 305 ~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~---~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 377 (734)
..... ++|||+..++-+-. +....++..+.... .+..-.... ....+.++.+..+ +.++|+. .| ++
T Consensus 453 lITAvcy~PdGk~avIGt~~----G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nD--Sr 525 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGTFN----GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-ND--SR 525 (712)
T ss_pred hheeEEeccCCceEEEEEec----cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CC--Cc
Confidence 22233 89999877765542 33555555443210 011111110 0123555554432 3455554 33 68
Q ss_pred EEEEECCCCceeeeeCCC---CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLD---LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~---~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|.++|+.+-+.+..+... ...+ ..+++.|++.++... . -..+|+|+.
T Consensus 526 IRI~d~~~~~lv~KfKG~~n~~SQ~-~Asfs~Dgk~IVs~s-e---Ds~VYiW~~ 575 (712)
T KOG0283|consen 526 IRIYDGRDKDLVHKFKGFRNTSSQI-SASFSSDGKHIVSAS-E---DSWVYIWKN 575 (712)
T ss_pred eEEEeccchhhhhhhcccccCCcce-eeeEccCCCEEEEee-c---CceEEEEeC
Confidence 999998666655566543 2223 445556777665443 2 247999988
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=73.65 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=74.7
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPN 647 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~ 647 (734)
++++|+|.|+|||.|.+++.++. . -+|+..|.+.....+..-++. ..+|. ...++..+.++ ++.|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g-~--~aVLiNPAv~P~~~L~~~ig~--~~~y~-~~~~~h~~eL~-------~~~p~- 125 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG-I--RQVIFNPNLFPEENMEGKIDR--PEEYA-DIATKCVTNFR-------EKNRD- 125 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC-C--CEEEECCCCChHHHHHHHhCC--Ccchh-hhhHHHHHHhh-------hcCcc-
Confidence 46999999999999999999864 2 455677777654432211111 01122 12233344444 23332
Q ss_pred CccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 648 NTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 648 ~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
..+++..+.|.+..+.++.+.++ +. ..+.+.+|+.|.|..-. +....+++|+.
T Consensus 126 -----r~~vllq~gDEvLDyr~a~~~y~------------~~-y~~~v~~GGdH~f~~fe----~~l~~I~~F~~ 178 (180)
T PRK04940 126 -----RCLVILSRNDEVLDSQRTAEELH------------PY-YEIVWDEEQTHKFKNIS----PHLQRIKAFKT 178 (180)
T ss_pred -----cEEEEEeCCCcccCHHHHHHHhc------------cC-ceEEEECCCCCCCCCHH----HHHHHHHHHHh
Confidence 17888889999998877665543 11 14678899999997532 45667888874
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00018 Score=76.07 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=106.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--------cccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--------KNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--------~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
..++++||||++++.+....+ ++.++|.++.+.+.... ...+..++.-||++..+++.-.+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~----~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------- 148 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPG----TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------- 148 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETT----EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-------
T ss_pred cceEEEcCCCCEEEEEecCCC----ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-------
Confidence 467999999999987665443 69999999988654211 11233466778888876666532
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc----
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS---- 291 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~---- 291 (734)
..+|+..+...... ..+.... ...+..+..|+|||||++...... +.|-++|++++....+.
T Consensus 149 --------~~~I~vVdy~d~~~--~~~~~i~-~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~~k~v~~i~~g~ 214 (369)
T PF02239_consen 149 --------TGEIWVVDYSDPKN--LKVTTIK-VGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKTGKLVALIDTGK 214 (369)
T ss_dssp --------TTEEEEEETTTSSC--EEEEEEE---TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTTTEEEEEEE-SS
T ss_pred --------CCeEEEEEeccccc--cceeeec-ccccccccccCcccceeeeccccc---ceeEEEeeccceEEEEeeccc
Confidence 23788888765422 2211111 122456789999999987643221 23333333331100000
Q ss_pred ----------------------------------------CCCCcee--eeccccceEE-EEEecCCeEEEEeCCCCCCc
Q psy4818 292 ----------------------------------------GKFPLKT--VIPGMDHHHE-IIANNGPELIVKTTKNAPKG 328 (734)
Q Consensus 292 ----------------------------------------~~~~~~~--l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~ 328 (734)
....|.. -+.....+.- ..+||++++|+-+..+....
T Consensus 215 ~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 215 KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDAD 294 (369)
T ss_dssp SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT
T ss_pred cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCc
Confidence 0000000 0111111111 25788888777533222245
Q ss_pred eEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 329 KVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 329 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
.|.++|.++.+ ....+.+.. ...+-.+.+. +++.++++. .+....|.++|.++.+++++|+
T Consensus 295 ~v~viD~~tl~--~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~-~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 295 TVQVIDKKTLK--VVKTITPGP-GKRVVHMEFNPDGKEVWVSV-WDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -EEEEECCGTE--EEE-HHHHH-T--EEEEEE-TTSSEEEEEE-E--TTEEEEEETTTTEEEEEEE
T ss_pred eEEEEECcCcc--eeEEEeccC-CCcEeccEECCCCCEEEEEE-ecCCCEEEEEECCCcEEEEEEE
Confidence 68889987653 112222222 2112233444 444555554 3443489999999998887776
|
... |
| >KOG2382|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=79.76 Aligned_cols=214 Identities=14% Similarity=0.094 Sum_probs=112.6
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
.+.|.++.+||-.|+...| ...-..+-.+.|--|+.+|.|-+|..- +.. ........+|+..-++..... +
T Consensus 50 ~~~Pp~i~lHGl~GS~~Nw--~sv~k~Ls~~l~~~v~~vd~RnHG~Sp---~~~--~h~~~~ma~dv~~Fi~~v~~~--~ 120 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKENW--RSVAKNLSRKLGRDVYAVDVRNHGSSP---KIT--VHNYEAMAEDVKLFIDGVGGS--T 120 (315)
T ss_pred CCCCceEEecccccCCCCH--HHHHHHhcccccCceEEEecccCCCCc---ccc--ccCHHHHHHHHHHHHHHcccc--c
Confidence 5788999999988876433 221122333446679999999866543 111 112222333444434333222 2
Q ss_pred CCCcEEEEEcChHH-HHHHHHHhcCCCceeEE-EE-cCCc-c--------hhcccc---ccc----cCcc----------
Q psy4818 566 KPKYITIMGGSNGG-LLVGACLNQRPELYGAA-LI-LVGA-L--------DMLRFN---KFT----IAYY---------- 616 (734)
Q Consensus 566 d~~ri~i~G~S~GG-~~~~~~~~~~p~~~~a~-v~-~~~~-~--------d~~~~~---~~~----~~~~---------- 616 (734)
--.++.|.|||||| -++++.....|++..-+ |. ..|. + ..+..+ ... .+..
T Consensus 121 ~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~ 200 (315)
T KOG2382|consen 121 RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVG 200 (315)
T ss_pred ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 34568999999999 55555555668754433 33 3341 0 000000 001 0000
Q ss_pred -------ccc------------cc-CCCC-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHH
Q psy4818 617 -------SES------------EF-GSPN-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIA 675 (734)
Q Consensus 617 -------~~~------------~~-g~~~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~ 675 (734)
|.. .| ++.. ..+.+..+...+.-.....+ ....| +|+++|.++..|+..+-.++.+
T Consensus 201 ~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~--~~~~p-vlfi~g~~S~fv~~~~~~~~~~ 277 (315)
T KOG2382|consen 201 FDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDG--PYTGP-VLFIKGLQSKFVPDEHYPRMEK 277 (315)
T ss_pred cchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhccccccccc--ccccc-eeEEecCCCCCcChhHHHHHHH
Confidence 000 00 1111 11222232222322222111 15566 9999999999999876544444
Q ss_pred HHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 676 TLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 676 ~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
... .++++..+++||+...... .+...-+..|+..+
T Consensus 278 ~fp-----------~~e~~~ld~aGHwVh~E~P--~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 278 IFP-----------NVEVHELDEAGHWVHLEKP--EEFIESISEFLEEP 313 (315)
T ss_pred hcc-----------chheeecccCCceeecCCH--HHHHHHHHHHhccc
Confidence 333 3588999999999875544 35566677777654
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.5e-06 Score=82.17 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCcCCc--------cccHHHH---HHHHhcCeEEEEEecccCC--CCCchhh-hcccc---ccCCCc
Q psy4818 486 RRNPVIIYGYGGYGVSVLP--------TFSISRC---MFLRHFNGIYAIPNIRGGG--ELGEDWH-NAGRL---LKKQNC 548 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~--------~~~~~~~---~~l~~~G~~v~~~~~rG~~--~~g~~~~-~~~~~---~~~~~~ 548 (734)
.+..+||++|+-.+.+..- +|-..+. ..++-.-|-|++.|.-||+ .-|..-. ..|+. .....+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 4566888889865543221 2322110 1233345999999999875 2222111 11110 123356
Q ss_pred hhHHHHHHHHHHHcCCCCCCcE-EEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYI-TIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
+.|.+.+-+.|+++--+ +++ +|+|+||||+.++..+..+||....+|..+.
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 88999988888776333 345 4999999999999999999998776666554
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00019 Score=71.06 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=102.4
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
++.++-.++.+|+.+++| .|++...-++|++.+|+..- .+...-.+....||.||..|+-....
T Consensus 63 H~~svFavsl~P~~~l~a-----TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms---------- 127 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVA-----TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS---------- 127 (399)
T ss_pred cCCceEEEEeCCCCceEE-----ecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC----------
Confidence 455677899999888777 34455678999999998432 22222234788999999876654332
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.+|.+++..++..+- .+..+-+ -+..+.|.|-+..|+.- .....+|+|.+..+ ..-+
T Consensus 128 ------G~v~v~~~stg~~~~-~~~~e~~---dieWl~WHp~a~illAG----~~DGsvWmw~ip~~---------~~~k 184 (399)
T KOG0296|consen 128 ------GKVLVFKVSTGGEQW-KLDQEVE---DIEWLKWHPRAHILLAG----STDGSVWMWQIPSQ---------ALCK 184 (399)
T ss_pred ------ccEEEEEcccCceEE-EeecccC---ceEEEEecccccEEEee----cCCCcEEEEECCCc---------ceee
Confidence 268888888775432 2332222 23457899988777643 23367999998772 1233
Q ss_pred eeccccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 299 VIPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 299 l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
+..+...... -+.|||++++-... ++.|.+|+++++.
T Consensus 185 v~~Gh~~~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 185 VMSGHNSPCTCGEFIPDGKRILTGYD----DGTIIVWNPKTGQ 223 (399)
T ss_pred EecCCCCCcccccccCCCceEEEEec----CceEEEEecCCCc
Confidence 4444333222 28999999886554 4569999999875
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=68.43 Aligned_cols=219 Identities=11% Similarity=0.031 Sum_probs=123.3
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec--CCCCeeEEEEEEecCCcEEEEEE
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF--PNGRSLGLHSEVTDCGRYLLVST 268 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~--~~~~~~~~~~~~SpDG~~l~~~~ 268 (734)
.+++|.-||..++-.+++. .+.++++.... +..+. ..+...+.++.|+|-..-+++++
T Consensus 24 ~Sv~wn~~g~~lasgs~dk----------------tv~v~n~e~~r----~~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDK----------------TVSVWNLERDR----FRKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred eEEEEcccCceeeecccCC----------------ceEEEEecchh----hhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 6899999999999888754 23344443221 11111 11222445678988877777665
Q ss_pred ecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec
Q psy4818 269 SNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348 (734)
Q Consensus 269 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 348 (734)
+. ...|.+||...+ .+...+....+.....|+|+|+++++..+. ..|..+|..+-. .+-.
T Consensus 84 s~---dk~ir~wd~r~~--------k~~~~i~~~~eni~i~wsp~g~~~~~~~kd----D~it~id~r~~~-----~~~~ 143 (313)
T KOG1407|consen 84 SG---DKTIRIWDIRSG--------KCTARIETKGENINITWSPDGEYIAVGNKD----DRITFIDARTYK-----IVNE 143 (313)
T ss_pred cC---CceEEEEEeccC--------cEEEEeeccCcceEEEEcCCCCEEEEecCc----ccEEEEEecccc-----eeeh
Confidence 43 257888998773 222223222333344599999999876554 247778876533 1111
Q ss_pred -CCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEE
Q psy4818 349 -EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 349 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
+....+.+-.+. ..+.++|..+..|. +.++...+-|.++.|.........+.++|+|+++++..+.. .+-++
T Consensus 144 ~~~~~e~ne~~w~-~~nd~Fflt~GlG~--v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA----lvSLW 216 (313)
T KOG1407|consen 144 EQFKFEVNEISWN-NSNDLFFLTNGLGC--VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA----LVSLW 216 (313)
T ss_pred hcccceeeeeeec-CCCCEEEEecCCce--EEEEeccccccccccccCCcceEEEEECCCCceEeeccccc----eeecc
Confidence 111223333333 33677777655444 44444445666677776644444788899998887654332 45677
Q ss_pred eCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcE
Q psy4818 428 NIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTR 471 (734)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 471 (734)
|+. ++.-++ -+..-++.++.+.| |.||+.
T Consensus 217 D~~---------ELiC~R-----~isRldwpVRTlSF-S~dg~~ 245 (313)
T KOG1407|consen 217 DVD---------ELICER-----CISRLDWPVRTLSF-SHDGRM 245 (313)
T ss_pred Chh---------Hhhhhe-----eeccccCceEEEEe-ccCcce
Confidence 771 122111 13344556677766 456653
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.4e-05 Score=84.34 Aligned_cols=123 Identities=11% Similarity=-0.042 Sum_probs=77.5
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..+.||||++++|-.. -.+.|.+||..+.+.+....+.. .+-+++|-|=||+|+-.++|.
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s-----~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr---------- 193 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVS-----LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR---------- 193 (942)
T ss_pred CCccceeccCCCccEEEEec-----ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCc----------
Confidence 34477899999999988433 33679999999886554333222 346899999999998877643
Q ss_pred cccCCcEEEEEECCCCCCCCe--eEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDI--PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~--~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.|.+|+...-+-+.. -.|++.....++..++|||||++|+....-....+-+-+++-++
T Consensus 194 ------tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 194 ------TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred ------eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 455555433111110 12222222347888999999999985433322335556665544
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0002 Score=76.08 Aligned_cols=248 Identities=15% Similarity=0.100 Sum_probs=147.0
Q ss_pred EeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEe
Q psy4818 130 FLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYC 208 (734)
Q Consensus 130 l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~ 208 (734)
++|...+..+ +.+.-+.|| ....||.+.. ..+|+|+..+|+.+..... ...+.++.|++||+.|+....+
T Consensus 168 vLDaP~l~dD--fY~nlldWs-s~n~laValg------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 168 VLDAPGLQDD--FYLNLLDWS-SANVLAVALG------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hccCCccccc--HhhhHhhcc-cCCeEEEEec------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC
Confidence 4554444322 335568899 5556887763 4799999999986543322 3345799999999999988764
Q ss_pred cCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCC
Q psy4818 209 DINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG 288 (734)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~ 288 (734)
. .|.++++.+..... -+... +...+..++|. ..++.... ....|..+|+.... .
T Consensus 239 g----------------~v~iwD~~~~k~~~--~~~~~-h~~rvg~laW~---~~~lssGs---r~~~I~~~dvR~~~-~ 292 (484)
T KOG0305|consen 239 G----------------TVQIWDVKEQKKTR--TLRGS-HASRVGSLAWN---SSVLSSGS---RDGKILNHDVRISQ-H 292 (484)
T ss_pred C----------------eEEEEehhhccccc--cccCC-cCceeEEEecc---CceEEEec---CCCcEEEEEEecch-h
Confidence 3 68888877643221 11111 34466778887 22332222 22466777776511 0
Q ss_pred cccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEE
Q psy4818 289 KISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKL 366 (734)
Q Consensus 289 ~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l 366 (734)
....+..+....-. -|++|+..++- ++.+..++.+|..... ....+..+. ..+..+.| +-...+
T Consensus 293 ------~~~~~~~H~qeVCgLkws~d~~~lAS----GgnDN~~~Iwd~~~~~--p~~~~~~H~--aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 293 ------VVSTLQGHRQEVCGLKWSPDGNQLAS----GGNDNVVFIWDGLSPE--PKFTFTEHT--AAVKALAWCPWQSGL 358 (484)
T ss_pred ------hhhhhhcccceeeeeEECCCCCeecc----CCCccceEeccCCCcc--ccEEEeccc--eeeeEeeeCCCccCc
Confidence 01111112222112 29999988773 3445679999985443 245555555 23333322 222456
Q ss_pred EEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 367 IVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 367 ~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+++........|..||..+|+.+..+... ..|.++.+++..++++.++.-.. .++.+|+.
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~--n~i~lw~~ 418 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSE--NQITLWKY 418 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCC--CcEEEEec
Confidence 66655444568999999989877666543 45778889999988876654333 25555655
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.9e-05 Score=77.64 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=65.8
Q ss_pred CCCcEEEE----ecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH
Q psy4818 486 RRNPVIIY----GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561 (734)
Q Consensus 486 ~~~P~vv~----~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 561 (734)
.+.|.||. +|| ++...... ...+...|. .|.-|..+-+.--.+ ...+++|+..+....++
T Consensus 67 ~krP~vViDPRAGHG-pGIGGFK~-dSevG~AL~-~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~ 130 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIGGFKP-DSEVGVALR-AGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVE 130 (581)
T ss_pred CCCCeEEeCCCCCCC-CCccCCCc-ccHHHHHHH-cCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHH
Confidence 56787777 676 23332222 223445565 498877776653222 22367788776443333
Q ss_pred c---CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEE-EEcCCcchh
Q psy4818 562 K---KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAA-LILVGALDM 605 (734)
Q Consensus 562 ~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~-v~~~~~~d~ 605 (734)
+ -.-+..|..++|...||++++.+++.+|+++.-+ ++.+|+.-|
T Consensus 131 ~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 131 EVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred HHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccc
Confidence 2 1223348999999999999999999999998754 567776543
|
Their function is unknown. |
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00016 Score=65.01 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=85.7
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCccccccc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 621 (734)
..+....++|.++.++.-+..- ++.+.+++||.|+.+++..+.+.-..++++++.+|.- ..+
T Consensus 36 ~~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd-~~~-------------- 97 (181)
T COG3545 36 DDWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD-VSR-------------- 97 (181)
T ss_pred CCCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC-ccc--------------
Confidence 3566677899988877655542 4459999999999999999887555678888877743 111
Q ss_pred CCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCC
Q psy4818 622 GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH 701 (734)
Q Consensus 622 g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH 701 (734)
+. .....+..++|+...+ ...| .+++++.||+.|+++++..+++++-.. ++....+||
T Consensus 98 --~~--~~~~~~~tf~~~p~~~-----lpfp-s~vvaSrnDp~~~~~~a~~~a~~wgs~------------lv~~g~~GH 155 (181)
T COG3545 98 --PE--IRPKHLMTFDPIPREP-----LPFP-SVVVASRNDPYVSYEHAEDLANAWGSA------------LVDVGEGGH 155 (181)
T ss_pred --cc--cchhhccccCCCcccc-----CCCc-eeEEEecCCCCCCHHHHHHHHHhccHh------------heecccccc
Confidence 00 0011223445544443 3345 899999999999999999999988765 666678888
Q ss_pred CCC
Q psy4818 702 GQG 704 (734)
Q Consensus 702 ~~~ 704 (734)
...
T Consensus 156 iN~ 158 (181)
T COG3545 156 INA 158 (181)
T ss_pred cch
Confidence 543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0027 Score=75.08 Aligned_cols=237 Identities=13% Similarity=0.123 Sum_probs=124.3
Q ss_pred EEeeEEeCCC-CcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEc-CCcEEEEEEEecCCCCCCCCcc
Q psy4818 143 ALKLYAFSDN-GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTH-DHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 143 ~~~~~~~SPD-G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.+..+.|+|. +++||-+. .+ ..|++||+.+++.+..... ...+..++|+| |+..|+-...+.
T Consensus 534 ~v~~l~~~~~~~~~las~~-~D----g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg---------- 598 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN-FE----GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG---------- 598 (793)
T ss_pred ceeeEEeccCCCCEEEEEe-CC----CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC----------
Confidence 3567889875 56665433 22 4799999998875443222 22346889997 676665555432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEE-ecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV-TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|.+|++.++.. +..+... .....+.| +++|.+|+... ....|++||+.++. .+...
T Consensus 599 ------~v~iWd~~~~~~--~~~~~~~---~~v~~v~~~~~~g~~latgs----~dg~I~iwD~~~~~-------~~~~~ 656 (793)
T PLN00181 599 ------SVKLWSINQGVS--IGTIKTK---ANICCVQFPSESGRSLAFGS----ADHKVYYYDLRNPK-------LPLCT 656 (793)
T ss_pred ------EEEEEECCCCcE--EEEEecC---CCeEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCC-------ccceE
Confidence 688899876532 2222221 13456777 45788887543 22689999997621 11222
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC----CCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC----EKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
+.......... |. ++..|+..+. +..|..||+.... ...+..+..+. ..+..+.+..++.++++...+
T Consensus 657 ~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D 729 (793)
T PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSET 729 (793)
T ss_pred ecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCC
Confidence 22222222223 54 6666554433 3458888876421 01122222222 223334444335566666665
Q ss_pred CceeEEEEECCCCceeeeeC-------------CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFP-------------LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~-------------~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+++|+...+..+.... .....|..+.+++++..++. .++. +.+.++++
T Consensus 730 --~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva-~~~d---G~I~i~~~ 792 (793)
T PLN00181 730 --NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA-ANST---GNIKILEM 792 (793)
T ss_pred --CEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE-ecCC---CcEEEEec
Confidence 367888864443211110 01234667777777655443 3322 24555554
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00067 Score=63.30 Aligned_cols=224 Identities=9% Similarity=0.089 Sum_probs=127.1
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+-....|-|..++| .+.....+++||++||+.+..- .....+..+.|..++.-++-.+++
T Consensus 60 ~EVlD~~~s~Dnskf~-----s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD------------ 122 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKFA-----SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD------------ 122 (307)
T ss_pred ceeeeccccccccccc-----cCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc------------
Confidence 3455677888998887 3334578999999999975432 222344678886655444333443
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
..+..|+..+...+.+.++.+..+. +.++..+ +.-|+ ..+ ....+..+|+..|. +.
T Consensus 123 ----~s~r~wDCRS~s~ePiQildea~D~--V~Si~v~--~heIv-aGS---~DGtvRtydiR~G~------------l~ 178 (307)
T KOG0316|consen 123 ----SSVRLWDCRSRSFEPIQILDEAKDG--VSSIDVA--EHEIV-AGS---VDGTVRTYDIRKGT------------LS 178 (307)
T ss_pred ----ceeEEEEcccCCCCccchhhhhcCc--eeEEEec--ccEEE-eec---cCCcEEEEEeecce------------ee
Confidence 2688888887777766676654322 2233332 22222 221 12456677776531 11
Q ss_pred cc-cc-ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCcee-EEEEEeeCCEEEEEEEeCCce
Q psy4818 301 PG-MD-HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTL-DVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 301 ~~-~~-~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 376 (734)
.+ +. +.... +|+||+-.+..+- +..|.++|-++++. ++....+. ...+ -...+...+..++..+++|
T Consensus 179 sDy~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~tGkl--L~sYkGhk-n~eykldc~l~qsdthV~sgSEDG-- 249 (307)
T KOG0316|consen 179 SDYFGHPITSVSFSKDGNCSLASSL----DSTLRLLDKETGKL--LKSYKGHK-NMEYKLDCCLNQSDTHVFSGSEDG-- 249 (307)
T ss_pred hhhcCCcceeEEecCCCCEEEEeec----cceeeecccchhHH--HHHhcccc-cceeeeeeeecccceeEEeccCCc--
Confidence 11 11 12223 8999987665433 34578888777651 11111121 1111 1223333367788888885
Q ss_pred eEEEEECCCCceeeeeCCCCce-EEeeccCcccceEEEEE
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLGQ-ITHISGRRKYNEVFYGF 415 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g~-v~~~~~~~d~~~l~~~~ 415 (734)
.+|.|||.+++.+..+..+... +.+++..|.-..+++..
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence 7999999888776666554433 45666666655555443
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0024 Score=61.00 Aligned_cols=116 Identities=11% Similarity=0.154 Sum_probs=72.7
Q ss_pred EEEeeEEeCCC-CcEEEEEEeCCCCceEEEEEEECCCCCcc--cccc---cccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 142 TALKLYAFSDN-GKHFAYCLSKSGSDWNTLHIKDVDTGKDY--PEVL---KNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 142 ~~~~~~~~SPD-G~~la~~~~~~g~~~~~l~v~dl~~g~~~--~~~~---~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
..+-.++|+|- |..||- ++....|+++++.++... ...+ ..-.+.+++|||.|+.|+-.+++.
T Consensus 15 ~r~W~~awhp~~g~ilAs-----cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~------ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILAS-----CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA------ 83 (312)
T ss_pred CcEEEEEeccCCceEEEe-----ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc------
Confidence 35778999998 886662 234468999998864421 1111 111246899999999999888865
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.+-++.-..+.-+-+.+.++.++ -+-.++||++|++||--+ + ...+|+|..+.
T Consensus 84 ----------t~~Iw~k~~~efecv~~lEGHEn--EVK~Vaws~sG~~LATCS-R---DKSVWiWe~de 136 (312)
T KOG0645|consen 84 ----------TVVIWKKEDGEFECVATLEGHEN--EVKCVAWSASGNYLATCS-R---DKSVWIWEIDE 136 (312)
T ss_pred ----------eEEEeecCCCceeEEeeeecccc--ceeEEEEcCCCCEEEEee-C---CCeEEEEEecC
Confidence 23333333222222334444332 245789999999999532 2 26799998875
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.6e-05 Score=72.65 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=89.2
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
-.+|||+|++||-.++ +.+.+.|..|=+..+.-.--..+..+.|+.|+-.|.-....++
T Consensus 13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~--------------- 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDP--------------- 71 (447)
T ss_pred ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccc---------------
Confidence 3689999999997664 6899999888765442211112367899999988887765331
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH 305 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~ 305 (734)
.|..+++....- ..-.++ ++.-....+||||||.|+.++. ...+|-+|.+.+... .++.....
T Consensus 72 ~vqvwsl~Qpew--~ckIde--g~agls~~~WSPdgrhiL~tse---F~lriTVWSL~t~~~----------~~~~~pK~ 134 (447)
T KOG4497|consen 72 KVQVWSLVQPEW--YCKIDE--GQAGLSSISWSPDGRHILLTSE---FDLRITVWSLNTQKG----------YLLPHPKT 134 (447)
T ss_pred eEEEEEeeccee--EEEecc--CCCcceeeeECCCcceEeeeec---ceeEEEEEEecccee----------EEeccccc
Confidence 566676654321 111122 1223456899999999987542 237888899887211 11111111
Q ss_pred e--EEEEEecCCeEEEEeCCCC
Q psy4818 306 H--HEIIANNGPELIVKTTKNA 325 (734)
Q Consensus 306 ~--~~~~s~dg~~l~~~s~~~~ 325 (734)
. ...+.+||+...+.+.++-
T Consensus 135 ~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 135 NVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred CceeEEECCCCceeeeeecccH
Confidence 1 1128899999998887753
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.5e-05 Score=78.05 Aligned_cols=232 Identities=15% Similarity=0.106 Sum_probs=122.7
Q ss_pred cEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec--ccCCCCCchhhhccccccCCC
Q psy4818 470 TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI--RGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 470 ~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--rG~~~~g~~~~~~~~~~~~~~ 547 (734)
..+.+.++.|++....++.|.++..||.......... ....++..++.++..+. +|....-........ .
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~ 102 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQSLG---YAVLLAEKGYRVLAGDASLFGESGGDPRGLADSE-----G 102 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCccccccCcch---HHHHhhhceeEEeeeccccccccccccccccCcc-----c
Confidence 6688889988875444689999999997554433221 34556666888777664 111111000000000 0
Q ss_pred chhHHHHHHHHHHHc---------CCCCCCcEEEEEcChHHHHHHHHHhcCC---CceeEEEEcCCcchhcccccc----
Q psy4818 548 CFDDFQAAAEYMINK---------KYTKPKYITIMGGSNGGLLVGACLNQRP---ELYGAALILVGALDMLRFNKF---- 611 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~---------~~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~~~a~v~~~~~~d~~~~~~~---- 611 (734)
...++.......... .....++....|.+.||..+...+...+ +..+.++...++-........
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~ 182 (299)
T COG1073 103 YAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANP 182 (299)
T ss_pred cccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccch
Confidence 011111111110000 0112357788888888888888776655 222222222221111100000
Q ss_pred ----ccCccccc-----c-------cCCCCCHHHHHHHHhCCccCCCCCCCCCcc-CCcEEEEecCCCCCCCChHHHHHH
Q psy4818 612 ----TIAYYSES-----E-------FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQ-YPATLVLTGDHDDRVPPLHSYKFI 674 (734)
Q Consensus 612 ----~~~~~~~~-----~-------~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~-~P~~Li~~g~~D~~v~~~~~~~~~ 674 (734)
........ . +..+.. . ...+...++...+.. +. .| +|++||..|..||..++..++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~d~~~~~~~----i~~~P-~l~~~G~~D~~vp~~~~~~~~ 255 (299)
T COG1073 183 ELARELIDYLITPGGFAPLPAPEAPLDTLPL-R-AVLLLLLDPFDDAEK----ISPRP-VLLVHGERDEVVPLRDAEDLY 255 (299)
T ss_pred HHHHhhhhhhccCCCCCCCCccccccccccc-c-hhhhccCcchhhHhh----cCCcc-eEEEecCCCcccchhhhHHHH
Confidence 00000000 0 000000 1 112445556666554 33 45 999999999999999999999
Q ss_pred HHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCch-HHhHHHHHHHHHHHHHHc
Q psy4818 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL-MKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 675 ~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~~l 725 (734)
.+.+.. +....++++++|...... ....+...++..||.++|
T Consensus 256 ~~~~~~---------~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 256 EAARER---------PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred hhhccC---------CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 887642 567788899999887422 212367778899998876
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00073 Score=67.01 Aligned_cols=248 Identities=14% Similarity=0.117 Sum_probs=146.9
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC-cccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK-DYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~-~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
+++.++..++++..|++||-.+.+ ..+.+||.++-. .+.... .....+.+.+-|-|..|+-...|.
T Consensus 148 GHt~sv~di~~~a~Gk~l~tcSsD-----l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~------- 215 (406)
T KOG0295|consen 148 GHTDSVFDISFDASGKYLATCSSD-----LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN------- 215 (406)
T ss_pred ccccceeEEEEecCccEEEecCCc-----cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc-------
Confidence 455668899999999998865532 347888877632 222111 222347888889998887665443
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCC-cccCC-C
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG-KISGK-F 294 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~ 294 (734)
.|..|+++++- .+..-+.++.|+..+..+-||..++ +.+....|.+|-++++... .++.. -
T Consensus 216 ---------tik~We~~tg~----cv~t~~~h~ewvr~v~v~~DGti~A----s~s~dqtl~vW~~~t~~~k~~lR~hEh 278 (406)
T KOG0295|consen 216 ---------TIKAWECDTGY----CVKTFPGHSEWVRMVRVNQDGTIIA----SCSNDQTLRVWVVATKQCKAELREHEH 278 (406)
T ss_pred ---------ceeEEecccce----eEEeccCchHhEEEEEecCCeeEEE----ecCCCceEEEEEeccchhhhhhhcccc
Confidence 68888988875 3445455667888899999999877 2233467888888773211 11111 1
Q ss_pred CceeeeccccceEEE---E--EecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEE
Q psy4818 295 PLKTVIPGMDHHHEI---I--ANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVH 369 (734)
Q Consensus 295 ~~~~l~~~~~~~~~~---~--s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 369 (734)
+...+.-.....++. - +-+|..+.+...+ +..|-.||+.++. -+-+|..++ .-+.++.+..+++.+++
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr---DktIk~wdv~tg~--cL~tL~ghd--nwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSR---DKTIKIWDVSTGM--CLFTLVGHD--NWVRGVAFSPGGKYILS 351 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecc---cceEEEEeccCCe--EEEEEeccc--ceeeeeEEcCCCeEEEE
Confidence 111111000011111 1 1123334444333 3457788988875 134454444 44566666665777777
Q ss_pred EEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEE
Q psy4818 370 YIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYH 426 (734)
Q Consensus 370 ~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~ 426 (734)
..+| ..|.+||++++.....+..+..-+..+.+..+. .++...+-.++..++.
T Consensus 352 caDD--ktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~--p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 352 CADD--KTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 404 (406)
T ss_pred EecC--CcEEEEEeccceeeeccCCCcceeEEEecCCCC--ceEEeccccceeeeee
Confidence 7776 468999998888777777666666666654333 3445555556655554
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00084 Score=66.58 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=139.8
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
..++...-+.|+--.++-++ +..+|+++|..+|+...-..+.. ....++++.-||.|+-++.+-
T Consensus 108 r~~vt~v~~hp~~~~v~~as-----~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl---------- 172 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSAS-----EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL---------- 172 (406)
T ss_pred ccceeeeeeccCceEEEEec-----CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc----------
Confidence 35566777788776555433 44789999999998643222222 135788888898887766532
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.+.+|+.++........ ..+...+..+.+-|-|.+|+ +....+.|..|++++|.. ...+
T Consensus 173 ------~~~LWd~~~~~~c~ks~---~gh~h~vS~V~f~P~gd~il----S~srD~tik~We~~tg~c--------v~t~ 231 (406)
T KOG0295|consen 173 ------SAKLWDFDTFFRCIKSL---IGHEHGVSSVFFLPLGDHIL----SCSRDNTIKAWECDTGYC--------VKTF 231 (406)
T ss_pred ------chhheeHHHHHHHHHHh---cCcccceeeEEEEecCCeee----ecccccceeEEeccccee--------EEec
Confidence 25666666532111111 12223456788889998876 222336889999998432 2222
Q ss_pred eccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE---------------eeCC
Q psy4818 300 IPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA---------------VANN 364 (734)
Q Consensus 300 ~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~ 364 (734)
....+ -+..+.+.++..++.+.. ....|-+|-++++. ++.++.+. ..+++-+.+ .++.
T Consensus 232 ~~h~e-wvr~v~v~~DGti~As~s--~dqtl~vW~~~t~~---~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 232 PGHSE-WVRMVRVNQDGTIIASCS--NDQTLRVWVVATKQ---CKAELREH-EHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred cCchH-hEEEEEecCCeeEEEecC--CCceEEEEEeccch---hhhhhhcc-ccceEEEEecccccCcchhhccCCCCCc
Confidence 22222 222344444445554443 24457777776653 12222222 111111111 1223
Q ss_pred EEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+.+..++| ..+..||+.+|..+-.|......|.++.++|.|+ +++++.... .+..||+
T Consensus 305 ~~l~s~SrD--ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDk---tlrvwdl 363 (406)
T KOG0295|consen 305 QVLGSGSRD--KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDK---TLRVWDL 363 (406)
T ss_pred cEEEeeccc--ceEEEEeccCCeEEEEEecccceeeeeEEcCCCe-EEEEEecCC---cEEEEEe
Confidence 566666666 4788999999998777776667788888988774 556666554 6888888
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-05 Score=77.85 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=130.3
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
+...+..+.||++|+.+.-++ -...|.+||++||+.+..-..+....-+.+-||+.-++++..-
T Consensus 257 H~k~Vrd~~~s~~g~~fLS~s-----fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s----------- 320 (503)
T KOG0282|consen 257 HRKPVRDASFNNCGTSFLSAS-----FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS----------- 320 (503)
T ss_pred chhhhhhhhccccCCeeeeee-----cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecC-----------
Confidence 345578899999999876433 2367999999999976533233333567889999767766532
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
..+|..|++.++.. +.+-..+-+-+..+.|-++|++.+-++. .+.+.+|+.... .+.. .
T Consensus 321 ----d~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSD----dks~riWe~~~~--------v~ik-~ 379 (503)
T KOG0282|consen 321 ----DKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSD----DKSVRIWENRIP--------VPIK-N 379 (503)
T ss_pred ----CCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCceEeeecc----CccEEEEEcCCC--------ccch-h
Confidence 22788899887641 1111122334567888999998764332 245666666541 1111 1
Q ss_pred eccccceEE--E-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC--CCceeEEEEEeeCCEEEEEEEeCC
Q psy4818 300 IPGMDHHHE--I-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED--ENRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 300 ~~~~~~~~~--~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
+........ . ..|++++++-.+.. ..++.+.+...-+.+-+..+.+. .+..++--+.++ +..+++.+.+
T Consensus 380 i~~~~~hsmP~~~~~P~~~~~~aQs~d----N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-G~~l~SGdsd- 453 (503)
T KOG0282|consen 380 IADPEMHTMPCLTLHPNGKWFAAQSMD----NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-GRTLCSGDSD- 453 (503)
T ss_pred hcchhhccCcceecCCCCCeehhhccC----ceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-CCeEEeecCC-
Confidence 111111111 1 56777766543332 23555544322111112222211 122222223344 6666666444
Q ss_pred ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEE
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGF 415 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ 415 (734)
..++.||.++-+....+..+.+.+.++.+.|-....++++
T Consensus 454 -G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 454 -GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred -ccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEec
Confidence 5899999888777777777766666777777665444443
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0016 Score=63.48 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=88.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc---ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD---YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~---~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.....||+.|.+||..... ..+.+||..|-.+ +...... +.+++||+||+.|+-.+.|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~p--i~sl~WS~dgr~LltsS~D~----------- 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRP--ITSLCWSRDGRKLLTSSRDW----------- 87 (405)
T ss_pred cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccc--eeEEEecCCCCEeeeecCCc-----------
Confidence 4568999999999987753 2588899887543 2222333 36899999999887766433
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.+..|++-.+..-....|.. -+.+..|.|-.+..++..--. ..-++.++.......|..+.+ ..+
T Consensus 88 -----si~lwDl~~gs~l~rirf~s-----pv~~~q~hp~k~n~~va~~~~---~sp~vi~~s~~~h~~Lp~d~d-~dl- 152 (405)
T KOG1273|consen 88 -----SIKLWDLLKGSPLKRIRFDS-----PVWGAQWHPRKRNKCVATIME---ESPVVIDFSDPKHSVLPKDDD-GDL- 152 (405)
T ss_pred -----eeEEEeccCCCceeEEEccC-----ccceeeeccccCCeEEEEEec---CCcEEEEecCCceeeccCCCc-ccc-
Confidence 67788877665333333332 234577877554443332211 123455555421111110000 000
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
........+.+.|++||.-+. .++|..++..+.+
T Consensus 153 -n~sas~~~fdr~g~yIitGts----KGkllv~~a~t~e 186 (405)
T KOG1273|consen 153 -NSSASHGVFDRRGKYIITGTS----KGKLLVYDAETLE 186 (405)
T ss_pred -ccccccccccCCCCEEEEecC----cceEEEEecchhe
Confidence 000111137788887774332 4578888887754
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.5e-05 Score=86.22 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=63.2
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc--c----------c---------ccc
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA--G----------R---------LLK 544 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~--~----------~---------~~~ 544 (734)
...|+||++||..+... .|. .++..|+++||.|+++|+||+|... |... + + ++.
T Consensus 447 ~g~P~VVllHG~~g~~~--~~~-~lA~~La~~Gy~VIaiDlpGHG~S~--~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn 521 (792)
T TIGR03502 447 DGWPVVIYQHGITGAKE--NAL-AFAGTLAAAGVATIAIDHPLHGARS--FDANASGVNATNANVLAYMNLASLLVARDN 521 (792)
T ss_pred CCCcEEEEeCCCCCCHH--HHH-HHHHHHHhCCcEEEEeCCCCCCccc--cccccccccccccCccceeccccccccccC
Confidence 34689999999765543 233 2446677679999999999976542 2200 0 0 011
Q ss_pred CCCchhHHHHHHHHHH------Hc----CCCCCCcEEEEEcChHHHHHHHHHhc
Q psy4818 545 KQNCFDDFQAAAEYMI------NK----KYTKPKYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~------~~----~~~d~~ri~i~G~S~GG~~~~~~~~~ 588 (734)
-...+.|+......|. .+ +..+..++.++|||+||.+...++..
T Consensus 522 ~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 522 LRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 1223456666655554 11 12456799999999999999999875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00075 Score=64.20 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=84.9
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+++.++-.+.++-|.++|. .|+..+.+.+||+++|+.+-....+.......|+++|..++++....
T Consensus 50 GHtGavW~~Did~~s~~li-----TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~--------- 115 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLI-----TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ--------- 115 (327)
T ss_pred CCCceEEEEEecCCcceee-----eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh---------
Confidence 3456677888888888887 46666899999999999765444444446789999999999988643
Q ss_pred ccccCCcEEEEEECCCCC----CCC-eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 219 TTAHMGQKIYYHVLGTEQ----DKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~----~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
......|.+.++.... .++ .+....++ .-...+-|+|-|++|+.- .....|-.||+.+|
T Consensus 116 --mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~G----he~G~is~~da~~g 179 (327)
T KOG0643|consen 116 --MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAG----HEDGSISIYDARTG 179 (327)
T ss_pred --cCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEe----cCCCcEEEEEcccC
Confidence 3445566666665322 111 22222222 234568899999999842 22357889999884
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0012 Score=71.42 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=132.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+-...|-|-+++|..... ...|-++|+.++..+.... ......+++-+||+++++-.+.|.
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k-----~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk------------- 476 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTK-----NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK------------- 476 (888)
T ss_pred EEEEEecCCCceEEEecc-----CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc-------------
Confidence 335678888888876543 2468999999887544322 122236778899999998877543
Q ss_pred CCcEEEEEEC------CCCCCC-----CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 223 MGQKIYYHVL------GTEQDK-----DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 223 ~~~~l~~~~l------~t~~~~-----~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
.|..|+. ++.+.+ ...+.+.++ -+..+++||||++|++..-+ +.+.++-+++. .
T Consensus 477 ---tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d---dvL~v~~Spdgk~LaVsLLd----nTVkVyflDtl-K---- 541 (888)
T KOG0306|consen 477 ---TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED---DVLCVSVSPDGKLLAVSLLD----NTVKVYFLDTL-K---- 541 (888)
T ss_pred ---EEEEEeEEEEeccCcccceeeeeccceEEeccc---cEEEEEEcCCCcEEEEEecc----CeEEEEEecce-e----
Confidence 2333321 111111 001223322 35678999999999987654 33444444441 0
Q ss_pred CCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEE
Q psy4818 292 GKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHY 370 (734)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 370 (734)
=...|-.+.-+.... +|||++.++ .+..+ .+-+++-.|. +.. -+.++.++ +.+. .+.+-+..+++|+.
T Consensus 542 ---FflsLYGHkLPV~smDIS~DSkliv-TgSAD-KnVKiWGLdF--GDC--HKS~fAHd-DSvm-~V~F~P~~~~FFt~ 610 (888)
T KOG0306|consen 542 ---FFLSLYGHKLPVLSMDISPDSKLIV-TGSAD-KNVKIWGLDF--GDC--HKSFFAHD-DSVM-SVQFLPKTHLFFTC 610 (888)
T ss_pred ---eeeeecccccceeEEeccCCcCeEE-eccCC-CceEEecccc--chh--hhhhhccc-Ccee-EEEEcccceeEEEe
Confidence 011222222233333 889987554 33322 2444555444 431 14566665 3333 33333448899998
Q ss_pred EeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 371 IQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 371 ~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+ ..+..||-..=+.++.+......+..++.+|+|+.+ ++.+... .+..|..
T Consensus 611 gKD--~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~v-vs~shD~---sIRlwE~ 663 (888)
T KOG0306|consen 611 GKD--GKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFV-VSSSHDK---SIRLWER 663 (888)
T ss_pred cCc--ceEEeechhhhhhheeeccchheeeeeEEcCCCCeE-EeccCCc---eeEeeec
Confidence 877 478899754344556776666667788888888644 4443322 4555554
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.4e-05 Score=75.45 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=90.0
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-----cccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-----TFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-----~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
..+++.+.. |+..|..+.+.-++. .+.--||+.-|- +..+.. .....+..+....|..|+..||||-|.
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a---~~~RWiL~s~GN-g~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~- 184 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEA---KPQRWILVSNGN-GECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGS- 184 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCC---CCCcEEEEEcCC-hHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCcccc-
Confidence 577888875 999999888764332 344466666553 222222 223345566677799999999999331
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC-CCCCCcEEEEEcChHHHHHHHHHhcCC----Ccee-EEEEcCCcchhc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK-YTKPKYITIMGGSNGGLLVGACLNQRP----ELYG-AALILVGALDML 606 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~~~~~~~~~p----~~~~-a~v~~~~~~d~~ 606 (734)
..|.. ....-+.|..++++||.++. -+.+++|.+.|+|.||.+++.++.++. |-.+ .+|...++.++.
T Consensus 185 -----S~G~~-s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRsfssl~ 258 (365)
T PF05677_consen 185 -----STGPP-SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRSFSSLA 258 (365)
T ss_pred -----CCCCC-CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCCcchHH
Confidence 12222 12345778899999998764 368999999999999999988776542 1122 244456666554
Q ss_pred c
Q psy4818 607 R 607 (734)
Q Consensus 607 ~ 607 (734)
.
T Consensus 259 ~ 259 (365)
T PF05677_consen 259 A 259 (365)
T ss_pred H
Confidence 3
|
|
| >KOG1516|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=89.99 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=85.7
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHH-HHHHHHhcCeEEEEEecccCCCCCchhhhcccccc-CCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSIS-RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK-KQN 547 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~-~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~-~~~ 547 (734)
-+..-++.|+.....+ .|++||+|||...... ..|... ....+..+..+|+.++||-|- +| |...+.... +-.
T Consensus 96 CLylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~~~~gN~ 171 (545)
T KOG1516|consen 96 CLYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDSAAPGNL 171 (545)
T ss_pred CceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCCCCCCcc
Confidence 4677888887643223 9999999998432221 112111 123445558999999999753 33 333322222 334
Q ss_pred chhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCc
Q psy4818 548 CFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGA 602 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~ 602 (734)
.+.|.+.|++|+.++ ---||++|.|+|+|+||.++..++.- ...+|+.+|+.+|.
T Consensus 172 gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 172 GLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 567999999999775 22699999999999999999888652 22488888887774
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=65.45 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=138.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.-+..+.+-|-..+++ .|+...+|.+||+++|+... .+..-....++++|+-.-++|-...+
T Consensus 152 gWVr~vavdP~n~wf~-----tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged------------ 214 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFA-----TGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED------------ 214 (460)
T ss_pred ceEEEEeeCCCceeEE-----ecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC------------
Confidence 3467788889888887 34455799999999998532 22111123578899877766655433
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.+|..|++...+. |..--.+-.-+..+...|--..|+ +. +..+.+.+||+.+. ..+..+.
T Consensus 215 ----k~VKCwDLe~nkv----IR~YhGHlS~V~~L~lhPTldvl~-t~---grDst~RvWDiRtr--------~~V~~l~ 274 (460)
T KOG0285|consen 215 ----KQVKCWDLEYNKV----IRHYHGHLSGVYCLDLHPTLDVLV-TG---GRDSTIRVWDIRTR--------ASVHVLS 274 (460)
T ss_pred ----CeeEEEechhhhh----HHHhccccceeEEEeccccceeEE-ec---CCcceEEEeeeccc--------ceEEEec
Confidence 2789999876531 211111222345567777666665 22 23378899999882 3344454
Q ss_pred ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 301 PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 301 ~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
.+......+ +.|-.-.++-.+. +..|.+||+..+. ....++.+. ..+...........++++.. ..+.
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~----D~tvrlWDl~agk--t~~tlt~hk--ksvral~lhP~e~~fASas~---dnik 343 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSH----DSTVRLWDLRAGK--TMITLTHHK--KSVRALCLHPKENLFASASP---DNIK 343 (460)
T ss_pred CCCCcceeEEeecCCCceEEecC----CceEEEeeeccCc--eeEeeeccc--ceeeEEecCCchhhhhccCC---ccce
Confidence 444443333 3333333553322 3468899997665 244555554 33344433332445554433 4688
Q ss_pred EEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 380 LHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|++..|+.++.+....+.+..++.+.|+ ++++.+. -..++.+|.
T Consensus 344 ~w~~p~g~f~~nlsgh~~iintl~~nsD~--v~~~G~d---ng~~~fwdw 388 (460)
T KOG0285|consen 344 QWKLPEGEFLQNLSGHNAIINTLSVNSDG--VLVSGGD---NGSIMFWDW 388 (460)
T ss_pred eccCCccchhhccccccceeeeeeeccCc--eEEEcCC---ceEEEEEec
Confidence 89998888777776665556666666554 5554433 356888888
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00041 Score=76.67 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=110.1
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISW 195 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~w 195 (734)
+.+.+-..+++..+++.=+ ..+...++|-+|+++|+.+ +...|.++++.++.... .......+..+.+
T Consensus 78 v~~y~fps~~~~~iL~Rft------lp~r~~~v~g~g~~iaags-----dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFT------LPIRDLAVSGSGKMIAAGS-----DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSY 146 (933)
T ss_pred EEEeeCCCCCccceeeeee------ccceEEEEecCCcEEEeec-----CceeEEEEeccccchheeecccCCceeeeeE
Confidence 4444444566665665432 4478899999999999754 45789999887765322 1222223468999
Q ss_pred EcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCee--EEe--cCCCCeeEEEEEEecCCcEEEEEEecC
Q psy4818 196 THDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIP--VVE--FPNGRSLGLHSEVTDCGRYLLVSTSNN 271 (734)
Q Consensus 196 SpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~--v~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~ 271 (734)
.|.+..|+.+..+. .|++|++.++.....+ +.. +.........++|+|+|..+++...+
T Consensus 147 ~p~~~fLAvss~dG----------------~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d- 209 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDG----------------KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD- 209 (933)
T ss_pred cCCCCEEEEEecCc----------------eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC-
Confidence 99999999888755 6888888765422111 000 01112345678999997766664433
Q ss_pred CCCceEEEEeCCCCCCCcccCCCCceeeeccc-cceEE--EEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 272 TQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM-DHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 272 ~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~-~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
+.|-+++..+... .-.+.... ...+. .|+|.|++|+-.+- +++|.+||+++
T Consensus 210 ---~~Vkvy~r~~we~--------~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~----~g~I~vWnv~t 263 (933)
T KOG1274|consen 210 ---NTVKVYSRKGWEL--------QFKLRDKLSSSKFSDLQWSPNGKYIAASTL----DGQILVWNVDT 263 (933)
T ss_pred ---CeEEEEccCCcee--------heeecccccccceEEEEEcCCCcEEeeecc----CCcEEEEeccc
Confidence 5788888776211 11122111 12233 39999998885433 45699999885
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00072 Score=71.22 Aligned_cols=234 Identities=13% Similarity=0.114 Sum_probs=121.7
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
++..+.+++..|.|.+|| +|++..+++||.+.||.++........+..++|+|.++.=+.....+
T Consensus 399 Htg~Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~---------- 463 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLA-----SGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG---------- 463 (733)
T ss_pred cCCeEEEEEecCCcceee-----ecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEec----------
Confidence 345578899999999999 56677789999999999876443333447899999987433333211
Q ss_pred cccCCcEEEEEECCCCC--C---CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQ--D---KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~--~---~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
. .+.+.+-.-+. . .+.+++..+.. -.||+ .+ ..|.-.. ...+ ..
T Consensus 464 ----~-~~~ivnp~~G~~~e~~~t~ell~~~~~~--------~~p~~-~~-------------~~W~~~~--~~e~--~~ 512 (733)
T KOG0650|consen 464 ----E-CVLIVNPIFGDRLEVGPTKELLASAPNE--------SEPDA-AV-------------VTWSRAS--LDEL--EK 512 (733)
T ss_pred ----C-ceEEeCccccchhhhcchhhhhhcCCCc--------cCCcc-cc-------------eeechhh--hhhh--cc
Confidence 1 24444322110 0 01111111110 11222 11 1111110 0000 00
Q ss_pred CceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 295 PLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 295 ~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
.+...+......... |..+|++|..+...++ +..+++..+..... +.-+.-. ...++.+.+..-...+|.+++.
T Consensus 513 ~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~-~~~VliHQLSK~~s---Q~PF~ks-kG~vq~v~FHPs~p~lfVaTq~ 587 (733)
T KOG0650|consen 513 GVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG-NKSVLIHQLSKRKS---QSPFRKS-KGLVQRVKFHPSKPYLFVATQR 587 (733)
T ss_pred ceEEEEecCCccceeeeecCCceEEEeccCCC-cceEEEEecccccc---cCchhhc-CCceeEEEecCCCceEEEEecc
Confidence 111122222222233 8888998887776544 45688888875431 1112112 2334444443323334444332
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|.+||+...+..+.+-...-.++.++.++.|+.+++. +...--.+|.+|+
T Consensus 588 ---~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g--s~d~k~~WfDldl 638 (733)
T KOG0650|consen 588 ---SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG--SYDKKMCWFDLDL 638 (733)
T ss_pred ---ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe--cCCCeeEEEEccc
Confidence 48899996555444443335567888999988888764 4443334555555
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.037 Score=56.20 Aligned_cols=252 Identities=17% Similarity=0.178 Sum_probs=124.5
Q ss_pred eeEEeCCCCcEEEEEEe-----CCCCceEEEEEEECCCCCcccc-cccc-------cccCeeEEEcCCcEEEEEEEecCC
Q psy4818 145 KLYAFSDNGKHFAYCLS-----KSGSDWNTLHIKDVDTGKDYPE-VLKN-------VKFPSISWTHDHKGFFYNQYCDIN 211 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~-----~~g~~~~~l~v~dl~~g~~~~~-~~~~-------~~~~~~~wSpDg~~l~y~~~~~~~ 211 (734)
..+.+||||+.++.... ..|...-.|-+||.+|=.+..+ .+.. .....++.|.|||++++.....
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-- 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP-- 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS--
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC--
Confidence 46889999999886542 2343334578999987543211 1110 1125678999999998877633
Q ss_pred CCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 212 GTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
...|-++++.... .+- +-+-++-.. +.-++..++..+ +....+..+.++...+..
T Consensus 117 ------------a~SVtVVDl~~~k----vv~-ei~~PGC~~-iyP~~~~~F~~l-----C~DGsl~~v~Ld~~Gk~~-- 171 (342)
T PF06433_consen 117 ------------ATSVTVVDLAAKK----VVG-EIDTPGCWL-IYPSGNRGFSML-----CGDGSLLTVTLDADGKEA-- 171 (342)
T ss_dssp ------------SEEEEEEETTTTE----EEE-EEEGTSEEE-EEEEETTEEEEE-----ETTSCEEEEEETSTSSEE--
T ss_pred ------------CCeEEEEECCCCc----eee-eecCCCEEE-EEecCCCceEEE-----ecCCceEEEEECCCCCEe--
Confidence 2368888887542 121 111222221 111222222221 111122333333200000
Q ss_pred CCCCceeeecc-ccce--EEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCC---CceEeecCC--CCcee---EEEEE
Q psy4818 292 GKFPLKTVIPG-MDHH--HEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEK---NWKTLIPED--ENRTL---DVVAA 360 (734)
Q Consensus 292 ~~~~~~~l~~~-~~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~--~~~~~---~~~~~ 360 (734)
......+.. .+.. ...++.++.+++|.|-. ++||.+|+.+.... .|..+.... +.... +.+.+
T Consensus 172 --~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 172 --QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp --EEEEEESSTTTS-B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred --EeeccccCCCCcccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 000111111 1111 12356677889997754 57999998765410 122111110 01111 11222
Q ss_pred -eeCCEEEEEEEeC-------CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCC
Q psy4818 361 -VANNKLIVHYIQN-------VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPEN 432 (734)
Q Consensus 361 -~~~~~l~~~~~~~-------~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~ 432 (734)
...+++|+.-..+ +..+|+++|+++++.++++.+. ..+.++.++.+.+=+++..+.- -..++++|.
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~--- 319 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAG--DGTLDVYDA--- 319 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETT--TTEEEEEET---
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCC--CCeEEEEeC---
Confidence 2336777654432 2358999999999998888765 2333566666666566665542 257999999
Q ss_pred cCCCC
Q psy4818 433 ITDQD 437 (734)
Q Consensus 433 ~~~~~ 437 (734)
.+|
T Consensus 320 --~tG 322 (342)
T PF06433_consen 320 --ATG 322 (342)
T ss_dssp --TT-
T ss_pred --cCC
Confidence 677
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2551|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00079 Score=62.96 Aligned_cols=184 Identities=17% Similarity=0.208 Sum_probs=106.8
Q ss_pred CCcEEEEecCCCCCcCCccccH---HHHHHHHhcCeEEEEEeccc-------CCCCC--------------chhhhccc-
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSI---SRCMFLRHFNGIYAIPNIRG-------GGELG--------------EDWHNAGR- 541 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~---~~~~~l~~~G~~v~~~~~rG-------~~~~g--------------~~~~~~~~- 541 (734)
+.+-||++||-- +....|+. .+...|.+. +-.+.++-+- .-.-+ ..|.....
T Consensus 4 ~k~rvLcLHGfr--Qsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~ 80 (230)
T KOG2551|consen 4 KKLRVLCLHGFR--QSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEA 80 (230)
T ss_pred CCceEEEecchh--hccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccc
Confidence 467899999953 33334432 244555543 4455554431 00000 22444322
Q ss_pred cccCCCchhH-HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc---------CCCceeEEEEcCCcchhcccccc
Q psy4818 542 LLKKQNCFDD-FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ---------RPELYGAALILVGALDMLRFNKF 611 (734)
Q Consensus 542 ~~~~~~~~~D-~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~---------~p~~~~a~v~~~~~~d~~~~~~~ 611 (734)
.......++. +....+|+.++|--| ||.|+|.|+.|++.+++. .| -|+-+|...|+.-.-
T Consensus 81 ~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf~~~~----- 150 (230)
T KOG2551|consen 81 SFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGFKFPS----- 150 (230)
T ss_pred ccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecCCCCc-----
Confidence 1122233444 445566778888777 899999999999999872 12 256666666654210
Q ss_pred ccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcE
Q psy4818 612 TIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPL 691 (734)
Q Consensus 612 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~ 691 (734)
.+.+.. . ...+ +++| .|-+.|+.|..||...+..+++...+.
T Consensus 151 -----------~~~~~~---~---------~~~~---i~~P-SLHi~G~~D~iv~~~~s~~L~~~~~~a----------- 192 (230)
T KOG2551|consen 151 -----------KKLDES---A---------YKRP---LSTP-SLHIFGETDTIVPSERSEQLAESFKDA----------- 192 (230)
T ss_pred -----------chhhhh---h---------hccC---CCCC-eeEEecccceeecchHHHHHHHhcCCC-----------
Confidence 000000 0 1122 7788 999999999999999999999876543
Q ss_pred EEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 692 LLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
. ++.-.+||.+..... ....+.+||...+.
T Consensus 193 ~-vl~HpggH~VP~~~~----~~~~i~~fi~~~~~ 222 (230)
T KOG2551|consen 193 T-VLEHPGGHIVPNKAK----YKEKIADFIQSFLQ 222 (230)
T ss_pred e-EEecCCCccCCCchH----HHHHHHHHHHHHHH
Confidence 3 334457999876542 23345666665543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.011 Score=59.11 Aligned_cols=257 Identities=11% Similarity=0.019 Sum_probs=130.4
Q ss_pred CeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc
Q psy4818 101 NNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 180 (734)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~ 180 (734)
.-++|-|+.+ . -+++.+..++.....+.+. .+..-.+.-.|||||++|.-+..+-.+.+..|-|||++.+-.
T Consensus 18 ~avafaRRPG-~---~~~v~D~~~g~~~~~~~a~----~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 18 EAVAFARRPG-T---FALVFDCRTGQLLQRLWAP----PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eEEEEEeCCC-c---EEEEEEcCCCceeeEEcCC----CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 3455555554 2 2445555556555555432 334446778999999998877766555667899999984432
Q ss_pred -ccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc---ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEE
Q psy4818 181 -YPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE---TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS 255 (734)
Q Consensus 181 -~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~ 255 (734)
+.+ ...++....+.|.|||++|+...---....+.|.. -+...+ .|-+.+..++..-+........+...+..+
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p-sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP-SLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC-ceEEEecCCCceeeeeecCccccccceeeE
Confidence 221 23334445789999999988753211001111111 112223 345555555432111111111122235678
Q ss_pred EEecCCcEEEEEEecCCCC---ceEEEEeCCCCCCCcccCCCCceeeeccc-cceEEE-EEecCCeEEEEeCCCCCCceE
Q psy4818 256 EVTDCGRYLLVSTSNNTQG---SDLHYFDLHSLPDGKISGKFPLKTVIPGM-DHHHEI-IANNGPELIVKTTKNAPKGKV 330 (734)
Q Consensus 256 ~~SpDG~~l~~~~~~~~~~---~~i~~~d~~~~~~~~l~~~~~~~~l~~~~-~~~~~~-~s~dg~~l~~~s~~~~~~~~l 330 (734)
++++||.-++-....+... .-|.+.+... .-..+. .+.. ..... ...-++ ++.+|+.+++.+-+. ..+
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~--~p~~-~~~~l~~Y~gSIa~~~~g~~ia~tsPrG---g~~ 241 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLP--APEE-QWRRLNGYIGSIAADRDGRLIAVTSPRG---GRV 241 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceecc--CChH-HHHhhCCceEEEEEeCCCCEEEEECCCC---CEE
Confidence 9999998766554443321 3455554443 111110 0000 00011 122233 788888888877764 358
Q ss_pred EEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 331 VTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 331 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
.++|.+++. +....+-. -..++...+ +.++++ +|...+...+.
T Consensus 242 ~~~d~~tg~---~~~~~~l~---D~cGva~~~-~~f~~s---sG~G~~~~~~~ 284 (305)
T PF07433_consen 242 AVWDAATGR---LLGSVPLP---DACGVAPTD-DGFLVS---SGQGQLIRLSP 284 (305)
T ss_pred EEEECCCCC---EeeccccC---ceeeeeecC-CceEEe---CCCccEEEccC
Confidence 888988776 33333222 234454444 333333 23345555543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0052 Score=57.55 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=137.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..+.+.-||+|..-. |++ .+|++|++..|..+..-.+.. .+-..+-|-|+..|+-...
T Consensus 18 gaV~avryN~dGnY~ltc----Gsd-rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg------------- 79 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC----GSD-RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG------------- 79 (307)
T ss_pred cceEEEEEccCCCEEEEc----CCC-ceEEeecccccceeeeecCCCceeeeccccccccccccCCC-------------
Confidence 457789999999987643 333 589999998887655332221 2234555667766665443
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
...+++|++.|++... -|. .+..-+..+.|..+...++ ++...+.+.+||-.+.. ..+.+++
T Consensus 80 ---Dk~v~vwDV~TGkv~R--r~r--gH~aqVNtV~fNeesSVv~----SgsfD~s~r~wDCRS~s-------~ePiQil 141 (307)
T KOG0316|consen 80 ---DKAVQVWDVNTGKVDR--RFR--GHLAQVNTVRFNEESSVVA----SGSFDSSVRLWDCRSRS-------FEPIQIL 141 (307)
T ss_pred ---CceEEEEEcccCeeee--ecc--cccceeeEEEecCcceEEE----eccccceeEEEEcccCC-------CCccchh
Confidence 3379999999986422 122 2333455678887776655 33344788888876611 2233445
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
.....+...+.-.+..|+ .... ++.+-.+|+..+. +...--...+..+.+.+++.+.+...-+ +.|.+
T Consensus 142 dea~D~V~Si~v~~heIv-aGS~---DGtvRtydiR~G~------l~sDy~g~pit~vs~s~d~nc~La~~l~--stlrL 209 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAEHEIV-AGSV---DGTVRTYDIRKGT------LSSDYFGHPITSVSFSKDGNCSLASSLD--STLRL 209 (307)
T ss_pred hhhcCceeEEEecccEEE-eecc---CCcEEEEEeecce------eehhhcCCcceeEEecCCCCEEEEeecc--ceeee
Confidence 555555544444444444 3322 3457777876553 2222224556666666656666666555 57899
Q ss_pred EECCCCceeeeeCCCCceEEeeccCc-ccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHISGRR-KYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~~~~-d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+|-.+|+.++........-.-+.... .....+++.|. -+.+|.||+
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE---DG~Vy~wdL 256 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE---DGKVYFWDL 256 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccC---CceEEEEEe
Confidence 99999998766554421111222211 23345555443 357999999
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.4e-05 Score=74.22 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCcCCccccH---HHHHHHHhcCeEEEEEecccC--------------------CCCCchhhhccccc
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSI---SRCMFLRHFNGIYAIPNIRGG--------------------GELGEDWHNAGRLL 543 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~---~~~~~l~~~G~~v~~~~~rG~--------------------~~~g~~~~~~~~~~ 543 (734)
+++-||++||...+.. -|.. .+...|.+.++-++.+|-+-- .+....|......
T Consensus 3 ~k~riLcLHG~~~na~--if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAE--IFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD- 79 (212)
T ss_dssp ---EEEEE--TT--HH--HHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S--
T ss_pred CCceEEEeCCCCcCHH--HHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC-
Confidence 4678999999754432 2222 233445433777777764321 1112233332211
Q ss_pred cCCCchhHHHHHHHHHHH----cCCCCCCcEEEEEcChHHHHHHHHHhcC--------CCceeEEEEcCCcchhcccccc
Q psy4818 544 KKQNCFDDFQAAAEYMIN----KKYTKPKYITIMGGSNGGLLVGACLNQR--------PELYGAALILVGALDMLRFNKF 611 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~~~~~~~~~--------p~~~~a~v~~~~~~d~~~~~~~ 611 (734)
.....++..++++|.+ +|- -.||+|+|.||.+++.++.+. ...||.+|+.+|+.-....
T Consensus 80 --~~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--- 150 (212)
T PF03959_consen 80 --DHEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--- 150 (212)
T ss_dssp --SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----
T ss_pred --cccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---
Confidence 2234455555555543 332 359999999999999887531 1247888888876531110
Q ss_pred ccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcE
Q psy4818 612 TIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPL 691 (734)
Q Consensus 612 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~ 691 (734)
+..+. ... .++.| +|-++|.+|..+++..++++++..... .
T Consensus 151 ------------------------~~~~~-~~~---~i~iP-tlHv~G~~D~~~~~~~s~~L~~~~~~~----------~ 191 (212)
T PF03959_consen 151 ------------------------YQELY-DEP---KISIP-TLHVIGENDPVVPPERSEALAEMFDPD----------A 191 (212)
T ss_dssp ------------------------GTTTT---T---T---E-EEEEEETT-SSS-HHHHHHHHHHHHHH----------E
T ss_pred ------------------------hhhhh-ccc---cCCCC-eEEEEeCCCCCcchHHHHHHHHhccCC----------c
Confidence 00111 111 16677 999999999999999999888887652 2
Q ss_pred EEEEeCCCCCCCCCc
Q psy4818 692 LLRVEQDAGHGQGTP 706 (734)
Q Consensus 692 ~~~~~~~~gH~~~~~ 706 (734)
.++. -+.||.+...
T Consensus 192 ~v~~-h~gGH~vP~~ 205 (212)
T PF03959_consen 192 RVIE-HDGGHHVPRK 205 (212)
T ss_dssp EEEE-ESSSSS----
T ss_pred EEEE-ECCCCcCcCC
Confidence 4444 4579988654
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0022 Score=65.48 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=121.0
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.++.|-|+++.|.|+- ..| ..|+.+|.++|+......... ++....--++..|+ +...
T Consensus 28 EgP~w~~~~~~L~w~D-I~~---~~i~r~~~~~g~~~~~~~p~~-~~~~~~~d~~g~Lv-~~~~---------------- 85 (307)
T COG3386 28 EGPVWDPDRGALLWVD-ILG---GRIHRLDPETGKKRVFPSPGG-FSSGALIDAGGRLI-ACEH---------------- 85 (307)
T ss_pred cCccCcCCCCEEEEEe-CCC---CeEEEecCCcCceEEEECCCC-cccceeecCCCeEE-EEcc----------------
Confidence 4689999999887754 343 369999998886433222221 13333323333333 3321
Q ss_pred cEEEEEECCCCCCCCeeEEecCCC-C-eeEEEEEEecCCcEEEEEEec-----CCC---CceEEEEeCCCCCCCcccCCC
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNG-R-SLGLHSEVTDCGRYLLVSTSN-----NTQ---GSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~-~-~~~~~~~~SpDG~~l~~~~~~-----~~~---~~~i~~~d~~~~~~~~l~~~~ 294 (734)
.+++.+..++... .++.+..++ . ...-.....|||++-+ .... ... ...||+++..++
T Consensus 86 -g~~~~~~~~~~~~-t~~~~~~~~~~~~r~ND~~v~pdG~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~--------- 153 (307)
T COG3386 86 -GVRLLDPDTGGKI-TLLAEPEDGLPLNRPNDGVVDPDGRIWF-GDMGYFDLGKSEERPTGSLYRVDPDGG--------- 153 (307)
T ss_pred -ccEEEeccCCcee-EEeccccCCCCcCCCCceeEcCCCCEEE-eCCCccccCccccCCcceEEEEcCCCC---------
Confidence 2344443322110 122211111 0 1222467788887543 3322 111 147899986541
Q ss_pred Cceeeecc-ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCC--CCC-CCceEeecCCCCceeEEEEEeeCCEEEEE
Q psy4818 295 PLKTVIPG-MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNN--PCE-KNWKTLIPEDENRTLDVVAAVANNKLIVH 369 (734)
Q Consensus 295 ~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~--~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 369 (734)
..+++.+ ...... .|||||+.+|+.-. ...+|++++++. +.. ..-..+....+.....++....++.+++.
T Consensus 154 -~~~l~~~~~~~~NGla~SpDg~tly~aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 154 -VVRLLDDDLTIPNGLAFSPDGKTLYVADT---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred -EEEeecCcEEecCceEECCCCCEEEEEeC---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 2233322 221112 39999998887533 345799998862 111 11111222112233344545544556554
Q ss_pred EEeCCceeEEEEECCCCceeeeeCCCCceEEeecc-CcccceEEEEEecCCCC
Q psy4818 370 YIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG-RRKYNEVFYGFTSFLQP 421 (734)
Q Consensus 370 ~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~-~~d~~~l~~~~ss~~~P 421 (734)
...++ ..|.+++. +|+.+..+..|...++..++ .++.+.|+++.+....+
T Consensus 230 a~~~g-~~v~~~~p-dG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 230 AVWGG-GRVVRFNP-DGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred cccCC-ceEEEECC-CCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCCC
Confidence 43333 58999999 59988888877433333322 35567888776665443
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0052 Score=63.16 Aligned_cols=234 Identities=13% Similarity=0.116 Sum_probs=128.6
Q ss_pred EEeeEEeCCCCc-EEEEEEeCCCCceEEEEEEECCC----CCc---c--------cccccccccCeeEEEcCCcEEEEEE
Q psy4818 143 ALKLYAFSDNGK-HFAYCLSKSGSDWNTLHIKDVDT----GKD---Y--------PEVLKNVKFPSISWTHDHKGFFYNQ 206 (734)
Q Consensus 143 ~~~~~~~SPDG~-~la~~~~~~g~~~~~l~v~dl~~----g~~---~--------~~~~~~~~~~~~~wSpDg~~l~y~~ 206 (734)
.+-..+|+|--. .+|+.. +...-+++++.. +.. + .....+-....++|+.||..|++..
T Consensus 180 ~V~~~~WnP~~~~llasg~-----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGS-----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ceEEEecCchhhhhhhccC-----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 356678888766 566433 223445555432 111 0 1122223457899999999999988
Q ss_pred EecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCC
Q psy4818 207 YCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP 286 (734)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~ 286 (734)
.+. .+.+|+..+... ..+. .+.+-+.++.|+.+|.||+- ..-...+.+||..+|.
T Consensus 255 ~~G----------------~~riw~~~G~l~---~tl~--~HkgPI~slKWnk~G~yilS----~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 255 EDG----------------EARIWNKDGNLI---STLG--QHKGPIFSLKWNKKGTYILS----GGVDGTTILWDAHTGT 309 (524)
T ss_pred cCc----------------EEEEEecCchhh---hhhh--ccCCceEEEEEcCCCCEEEe----ccCCccEEEEeccCce
Confidence 754 577777765432 2222 22334568999999999983 2233678889987732
Q ss_pred CCcccCCCCceeeec-cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCC
Q psy4818 287 DGKISGKFPLKTVIP-GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANN 364 (734)
Q Consensus 287 ~~~l~~~~~~~~l~~-~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 364 (734)
+...+. .......+ |-.+ +.++..+. + ....||.++.+.+. ..++.+. ..+..+.+.+-+
T Consensus 310 ---------~~q~f~~~s~~~lDVdW~~~-~~F~ts~t-d-~~i~V~kv~~~~P~----~t~~GH~--g~V~alk~n~tg 371 (524)
T KOG0273|consen 310 ---------VKQQFEFHSAPALDVDWQSN-DEFATSST-D-GCIHVCKVGEDRPV----KTFIGHH--GEVNALKWNPTG 371 (524)
T ss_pred ---------EEEeeeeccCCccceEEecC-ceEeecCC-C-ceEEEEEecCCCcc----eeeeccc--CceEEEEECCCC
Confidence 121111 11111222 5433 33443222 2 23446666655543 6666544 445566665547
Q ss_pred EEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCccc--------ceEEEEEecCCCCceEEEEeC
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKY--------NEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~--------~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|+.+.+.|+ .|.+|+...+.....+....-.|..+.++|.+ +..+++.++. ..+-.||+
T Consensus 372 ~LLaS~SdD~--TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d---stV~lwdv 439 (524)
T KOG0273|consen 372 SLLASCSDDG--TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD---STVKLWDV 439 (524)
T ss_pred ceEEEecCCC--eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC---CeEEEEEc
Confidence 8888888874 68888865554444454443344455555442 3344443332 36778888
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0036 Score=63.64 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=135.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+..+..+|....++ .|.+...+.++|-.+++.+..-.++. ......++||...++-.+.+.
T Consensus 222 i~ald~~~s~~~il-----TGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~------------- 283 (506)
T KOG0289|consen 222 ITALDIIPSSSKIL-----TGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADE------------- 283 (506)
T ss_pred eeEEeecCCCCcce-----ecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcc-------------
Confidence 44555666544443 34455578888988887665444333 335677788887666554432
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
.|++|..+........ ...+. -+..+...|.|.|++-.+++ ..+-..|..+| .........
T Consensus 284 ---~i~vws~~~~s~~~~~--~~h~~--~V~~ls~h~tgeYllsAs~d----~~w~Fsd~~~g--------~~lt~vs~~ 344 (506)
T KOG0289|consen 284 ---IIRVWSVPLSSEPTSS--RPHEE--PVTGLSLHPTGEYLLSASND----GTWAFSDISSG--------SQLTVVSDE 344 (506)
T ss_pred ---eEEeeccccccCcccc--ccccc--cceeeeeccCCcEEEEecCC----ceEEEEEccCC--------cEEEEEeec
Confidence 5777777655432221 11111 34567888999998754433 22333455552 122222221
Q ss_pred -ccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 303 -MDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 303 -~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
.+-.+. .|.||| ++|.+. ..++.|-.||++.+. + ..-+++. ...+..+.+..+++.++...+++ .+.
T Consensus 345 ~s~v~~ts~~fHpDg--Lifgtg--t~d~~vkiwdlks~~--~-~a~Fpgh-t~~vk~i~FsENGY~Lat~add~--~V~ 414 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDG--LIFGTG--TPDGVVKIWDLKSQT--N-VAKFPGH-TGPVKAISFSENGYWLATAADDG--SVK 414 (506)
T ss_pred cccceeEEeeEcCCc--eEEecc--CCCceEEEEEcCCcc--c-cccCCCC-CCceeEEEeccCceEEEEEecCC--eEE
Confidence 111222 388887 455443 345678889998754 1 2234443 45677777777787777777775 399
Q ss_pred EEECCCCceeeeeCCCC-ceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 380 LHDLNTGKRLHSFPLDL-GQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~~-g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+|||.--+..+.++.+. ..+.+++++..|..+.+..++ -++|.++-
T Consensus 415 lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~----l~Vy~~~k 461 (506)
T KOG0289|consen 415 LWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD----LQVYICKK 461 (506)
T ss_pred EEEehhhcccceeeccccccceeEEEcCCCCeEEeecce----eEEEEEec
Confidence 99996555556666652 245577777777766665332 25777764
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0093 Score=66.38 Aligned_cols=241 Identities=12% Similarity=0.134 Sum_probs=138.0
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
++.+...+.|-|||+.|. +...+| .|.+|+.-.-...+.++........+.+-++..|+-.+.
T Consensus 12 ht~G~t~i~~d~~gefi~-tcgsdg----~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~------------ 74 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFIC-TCGSDG----DIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSE------------ 74 (933)
T ss_pred ccCceEEEEEcCCCCEEE-EecCCC----ceEEeecCCcccCCchhhccCceeEEEeecccceEEeec------------
Confidence 344567899999999655 443343 477777544423333443221122334455655554443
Q ss_pred cccCCcEEEEEECCCCCCCCeeE-EecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPV-VEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v-~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.+.|.+++++.++...++. |+.+ ...++++-+|+++++-+ +...|.++++.+... ...
T Consensus 75 ----~~tv~~y~fps~~~~~iL~Rftlp-----~r~~~v~g~g~~iaags----dD~~vK~~~~~D~s~--------~~~ 133 (933)
T KOG1274|consen 75 ----QNTVLRYKFPSGEEDTILARFTLP-----IRDLAVSGSGKMIAAGS----DDTAVKLLNLDDSSQ--------EKV 133 (933)
T ss_pred ----cceEEEeeCCCCCccceeeeeecc-----ceEEEEecCCcEEEeec----CceeEEEEeccccch--------hee
Confidence 2378999999887664432 2222 23578999999999643 336788888877321 122
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC-CceEeecCCCCc---eeEEEEE-eeCCEEEEEEEe
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK-NWKTLIPEDENR---TLDVVAA-VANNKLIVHYIQ 372 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~---~~~~~~~-~~~~~l~~~~~~ 372 (734)
+.......... +.|.+..|+..+. +++|+.|++.++... .+..+.+..+.. ...-..| ++++++++...+
T Consensus 134 lrgh~apVl~l~~~p~~~fLAvss~----dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKGNFLAVSSC----DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred ecccCCceeeeeEcCCCCEEEEEec----CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence 22222233333 7888887776554 357999999876421 233343333211 1222333 455677766554
Q ss_pred CCceeEEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ .|.+|+.++.+....+... ...+..+.++|.|.+++. ++. -..|.+||.
T Consensus 210 ~---~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA--s~~--~g~I~vWnv 261 (933)
T KOG1274|consen 210 N---TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA--STL--DGQILVWNV 261 (933)
T ss_pred C---eEEEEccCCceeheeecccccccceEEEEEcCCCcEEee--ecc--CCcEEEEec
Confidence 4 6888888777665555443 223667888998866553 222 246667776
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.003 Score=61.88 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=52.9
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC-CEEEEEEEeCCceeEEEEECCCCc
Q psy4818 309 IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN-NKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 309 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
.|++|...+. ..|...++. |+++|+...+ +..++.+. ..+..+.+..+ -++++.. |.++||.|.+ +|-
T Consensus 325 afs~Ds~y~a-Trnd~~Pna-lW~Wdlq~l~---l~avLiQk--~piraf~WdP~~prL~vct---g~srLY~W~p-sg~ 393 (447)
T KOG4497|consen 325 AFSCDSTYAA-TRNDKYPNA-LWLWDLQNLK---LHAVLIQK--HPIRAFEWDPGRPRLVVCT---GKSRLYFWAP-SGP 393 (447)
T ss_pred eecCCceEEe-eecCCCCce-EEEEechhhh---hhhhhhhc--cceeEEEeCCCCceEEEEc---CCceEEEEcC-CCc
Confidence 3888865433 445555554 9999997654 33344443 34455555543 3566654 4578999998 674
Q ss_pred eeeeeCCCCceEEeeccCcccceEE
Q psy4818 388 RLHSFPLDLGQITHISGRRKYNEVF 412 (734)
Q Consensus 388 ~~~~l~~~~g~v~~~~~~~d~~~l~ 412 (734)
..-..+.+-..|..+.+.-++.-++
T Consensus 394 ~~V~vP~~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 394 RVVGVPKKGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred eEEecCCCCceeeeEEecCCCcEEE
Confidence 3223333323455565655554433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0028 Score=63.33 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=71.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..+..+++||||+.+|+..... ....|++....+...... .......++|++|| ++++.....
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~--~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g-~~W~v~~~~------------ 86 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGD--GGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDG-WVWTVDDGS------------ 86 (253)
T ss_pred ccccceEECCCCCeEEEEEEcC--CCCEEEEEcCCCcceeec--cCCccccccccCCC-CEEEEEcCC------------
Confidence 3477899999999999988322 336899987655433222 22245789999996 455554321
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH 283 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~ 283 (734)
....+.+ +..++....+.+ ..+....-+..+.+||||.++++....... .+|++.-+.
T Consensus 87 -~~~~~~~-~~~~g~~~~~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~-~~v~va~V~ 144 (253)
T PF10647_consen 87 -GGVRVVR-DSASGTGEPVEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGG-GRVYVAGVV 144 (253)
T ss_pred -CceEEEE-ecCCCcceeEEe-cccccCCceEEEEECCCCcEEEEEEecCCC-CeEEEEEEE
Confidence 1112222 111222111111 111111145689999999999999866444 688887654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.025 Score=60.94 Aligned_cols=159 Identities=12% Similarity=0.118 Sum_probs=91.5
Q ss_pred CeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc---c-cceEEEEEecCCeEEEEeCCC
Q psy4818 249 RSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG---M-DHHHEIIANNGPELIVKTTKN 324 (734)
Q Consensus 249 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~---~-~~~~~~~s~dg~~l~~~s~~~ 324 (734)
...+...+.||||.+|++..-. ...||.+.-+. .+ ....+-.. . ....-.++-|+..+++.+..
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~----~v----k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~- 449 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS---RTKIYRLQPDP----NV----KVINVDDVPLALLDASAISFTIDKNKLFLVSKN- 449 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc---ceEEEEeccCc----ce----eEEEeccchhhhccceeeEEEecCceEEEEecc-
Confidence 3466778999999999986532 13455444332 11 11111000 1 11122388899988888732
Q ss_pred CCCceEEEEecCCCCCCCceEeecCCCCceeE-EEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC-CCCceEEee
Q psy4818 325 APKGKVVTINLNNPCEKNWKTLIPEDENRTLD-VVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP-LDLGQITHI 402 (734)
Q Consensus 325 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~-~~~g~v~~~ 402 (734)
.+.|..++++++.......+.+...-..+. -+...+|+++++.. ....+++|++++++. +.+. .....+...
T Consensus 450 --~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~~-~~l~~rln~~vTa~ 523 (691)
T KOG2048|consen 450 --IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLES-HLLKVRLNIDVTAA 523 (691)
T ss_pred --cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEccccee-ecchhccCcceeee
Confidence 356888888876543344444442122233 33445667777665 346899999987764 3333 223334455
Q ss_pred ccC-cccceEEEEEecCCCCceEEEEeC
Q psy4818 403 SGR-RKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 403 ~~~-~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+ ++.+.+++.+++ .++|.+|+
T Consensus 524 ~~~~~~~~~lvvats~----nQv~efdi 547 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSN----NQVFEFDI 547 (691)
T ss_pred eccccccCcEEEEecC----CeEEEEec
Confidence 555 345678777765 37999999
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00069 Score=71.30 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCeEEEEEecccCCCCCchhhhccc--cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHH
Q psy4818 508 ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR--LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585 (734)
Q Consensus 508 ~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~ 585 (734)
....+.|.. |+-|.+.|-+ .+.. ...+...++|.+..+...++. +.++ +.++|.|+||.+++++
T Consensus 120 RS~V~~Ll~-g~dVYl~DW~----------~p~~vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa 185 (406)
T TIGR01849 120 RSTVEALLP-DHDVYITDWV----------NARMVPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAA 185 (406)
T ss_pred HHHHHHHhC-CCcEEEEeCC----------CCCCCchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHH
Confidence 345566776 9999998853 3321 123556678877654444433 3455 9999999999998876
Q ss_pred HhcC-----CCceeEEEEcCCcchhc
Q psy4818 586 LNQR-----PELYGAALILVGALDML 606 (734)
Q Consensus 586 ~~~~-----p~~~~a~v~~~~~~d~~ 606 (734)
++.. |+..+.+++..+.+|..
T Consensus 186 ~Al~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 186 VALMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHHHhcCCCCCcceEEEEecCccCC
Confidence 6543 55678888877776654
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0027 Score=61.89 Aligned_cols=226 Identities=11% Similarity=0.143 Sum_probs=115.1
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
+...+.+++||+||++|.-++. ...|.+||+..|.++.....+..+.+..|.|-.+..+.+..-+.
T Consensus 64 H~~pi~sl~WS~dgr~LltsS~-----D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~--------- 129 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSSR-----DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE--------- 129 (405)
T ss_pred cccceeEEEecCCCCEeeeecC-----CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC---------
Confidence 4456889999999999986553 25799999999987654433333456777775554444432111
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEE---EEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS---EVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~---~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
.-++..++.+ ...++-..++.. ....+ .+.+-|++|+. ++....+.+++.++.+ ++ .+
T Consensus 130 ------sp~vi~~s~~--~h~~Lp~d~d~d-ln~sas~~~fdr~g~yIit----GtsKGkllv~~a~t~e--~v----as 190 (405)
T KOG1273|consen 130 ------SPVVIDFSDP--KHSVLPKDDDGD-LNSSASHGVFDRRGKYIIT----GTSKGKLLVYDAETLE--CV----AS 190 (405)
T ss_pred ------CcEEEEecCC--ceeeccCCCccc-cccccccccccCCCCEEEE----ecCcceEEEEecchhe--ee----ee
Confidence 1223333321 111111111111 11222 37888999973 3344688889988821 11 11
Q ss_pred eeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCC---CCCCCceEeecCCC-Ccee---E--EEEEeeCCEE
Q psy4818 297 KTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNN---PCEKNWKTLIPEDE-NRTL---D--VVAAVANNKL 366 (734)
Q Consensus 297 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~---~~~~~~~~l~~~~~-~~~~---~--~~~~~~~~~l 366 (734)
-+++. ....-. .++..|+.|++-+.. .-|-.+++.. ... -.++.+... .+++ + .+.+.. +..
T Consensus 191 ~rits-~~~IK~I~~s~~g~~liiNtsD----RvIR~ye~~di~~~~r--~~e~e~~~K~qDvVNk~~Wk~ccfs~-dge 262 (405)
T KOG1273|consen 191 FRITS-VQAIKQIIVSRKGRFLIINTSD----RVIRTYEISDIDDEGR--DGEVEPEHKLQDVVNKLQWKKCCFSG-DGE 262 (405)
T ss_pred eeech-heeeeEEEEeccCcEEEEecCC----ceEEEEehhhhcccCc--cCCcChhHHHHHHHhhhhhhheeecC-Ccc
Confidence 11211 111112 277788877765443 2244455431 100 011111000 0111 1 122222 334
Q ss_pred EEEEEeCCceeEEEEECCCCceeeeeCCCCce-EEeeccCc
Q psy4818 367 IVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQ-ITHISGRR 406 (734)
Q Consensus 367 ~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~-v~~~~~~~ 406 (734)
|+.+.......||+|....|..++.|.++.|. ...+.+.|
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 44443344468999998889888888776543 22444444
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.77 E-value=9e-05 Score=80.94 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=72.6
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh--ccccccC---
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN--AGRLLKK--- 545 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~--~~~~~~~--- 545 (734)
-.-+.+.-..+-..+ .|++|++-| -+.... ......+..+..+.|..+++...|- ||...-- ......+
T Consensus 14 f~qRY~~n~~~~~~~-gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt 88 (434)
T PF05577_consen 14 FSQRYWVNDQYYKPG-GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLT 88 (434)
T ss_dssp EEEEEEEE-TT--TT-SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-S
T ss_pred EEEEEEEEhhhcCCC-CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcC
Confidence 333444444443223 889888844 332211 1112234466667799999999998 7765421 1111111
Q ss_pred -CCchhHHHHHHHHHHHcC-CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 546 -QNCFDDFQAAAEYMINKK-YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 546 -~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
...++|+..-++++..+. ..+..+++++|+||||.|++++-.++|++|.++++.++.+
T Consensus 89 ~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv 148 (434)
T PF05577_consen 89 SEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPV 148 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--C
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEecccee
Confidence 234778888888887553 3355699999999999999999999999998888766644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00066 Score=69.74 Aligned_cols=241 Identities=9% Similarity=0.065 Sum_probs=131.7
Q ss_pred CCcEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCC-CCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 139 DGTTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDT-GKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 139 ~~~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~-g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
+++-+++.+.|.| .|..|+ +.. -...|+||++-+ ++.++.-.+.. .+..+.||.+|..|+-+++|.
T Consensus 212 gH~kgvsai~~fp~~~hLlL-S~g----mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~------ 280 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLL-SGG----MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR------ 280 (503)
T ss_pred CCccccchhhhccceeeEEE-ecC----CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce------
Confidence 4566788999999 555444 332 336799999876 65555433322 236889999999999888865
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.|.+|+..|++.. .-|.... ....+.+.||+..+++... ....|..||+.+++ +
T Consensus 281 ----------~lKlwDtETG~~~--~~f~~~~---~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs~k---v----- 334 (503)
T KOG0282|consen 281 ----------FLKLWDTETGQVL--SRFHLDK---VPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRSGK---V----- 334 (503)
T ss_pred ----------eeeeeccccceEE--EEEecCC---CceeeecCCCCCcEEEEec---CCCcEEEEeccchH---H-----
Confidence 6888898888532 2233221 2345789999977777543 33789999998832 1
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
++..-.+....... |-++|++++-.++.. .+..|+...+.. .+.+.... ......+....++..++..+-+
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdk----s~riWe~~~~v~--ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~d- 406 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDK----SVRIWENRIPVP--IKNIADPE-MHTMPCLTLHPNGKWFAAQSMD- 406 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCc----cEEEEEcCCCcc--chhhcchh-hccCcceecCCCCCeehhhccC-
Confidence 01000111111222 667888777655543 355555544331 12222111 2222223322223333332222
Q ss_pred ceeEEEEECCCCc---eeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 375 RSVMDLHDLNTGK---RLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 375 ~~~l~~~dl~~g~---~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..++++.+..-- ..+.+... .|.-..+.+|||++.|. +.++ -+.++.||.
T Consensus 407 -N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~-SGds---dG~v~~wdw 461 (503)
T KOG0282|consen 407 -NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC-SGDS---DGKVNFWDW 461 (503)
T ss_pred -ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE-eecC---CccEEEeec
Confidence 345555431100 01233332 33333677889987554 3333 357899998
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.015 Score=58.12 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=118.6
Q ss_pred CeeEEEc-CCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 191 PSISWTH-DHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 191 ~~~~wSp-Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
.+++.+| ++.-++|.+.+. ..+++++..+++.. .....+.+..|+....||+||++|+.+.+
T Consensus 8 H~~a~~p~~~~avafaRRPG---------------~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPG---------------TFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCC---------------cEEEEEEcCCCcee--eEEcCCCCCEEecCEEEcCCCCEEEEecc
Confidence 4678889 555666666543 25677777776533 34444556667778899999999987765
Q ss_pred cCCC-CceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCC------C---------CCceEEEE
Q psy4818 270 NNTQ-GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKN------A---------PKGKVVTI 333 (734)
Q Consensus 270 ~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~------~---------~~~~l~~~ 333 (734)
+-.. ...|-+||+..+ -..+ ..+ -..+.......+.|||+.|++. |-+ . -...|..+
T Consensus 71 d~~~g~G~IgVyd~~~~-~~ri---~E~--~s~GIGPHel~l~pDG~tLvVA-NGGI~Thpd~GR~kLNl~tM~psL~~l 143 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARG-YRRI---GEF--PSHGIGPHELLLMPDGETLVVA-NGGIETHPDSGRAKLNLDTMQPSLVYL 143 (305)
T ss_pred ccCCCcEEEEEEECcCC-cEEE---eEe--cCCCcChhhEEEcCCCCEEEEE-cCCCccCcccCceecChhhcCCceEEE
Confidence 4322 268899999841 1110 000 0111122222388999887764 311 1 12346667
Q ss_pred ecCCCCCCCceE-eec-CCCCceeEEEEEeeCCEEEEEEEeCC-----ceeEEEEECCCCceeeeeCCC-------CceE
Q psy4818 334 NLNNPCEKNWKT-LIP-EDENRTLDVVAAVANNKLIVHYIQNV-----RSVMDLHDLNTGKRLHSFPLD-------LGQI 399 (734)
Q Consensus 334 d~~~~~~~~~~~-l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~dl~~g~~~~~l~~~-------~g~v 399 (734)
|..+++. ... -++ ......+.-+.+..++.+++.....+ .+-|.+++. |+.++.+..+ .+.+
T Consensus 144 d~~sG~l--l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 144 DARSGAL--LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred ecCCCce--eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCce
Confidence 6666541 111 122 22223455555655556665554333 245666654 4434555443 3567
Q ss_pred EeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 400 THISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 400 ~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
.++..+.+++.++++ |+. -..+..+|. +++
T Consensus 220 gSIa~~~~g~~ia~t--sPr-Gg~~~~~d~-----~tg 249 (305)
T PF07433_consen 220 GSIAADRDGRLIAVT--SPR-GGRVAVWDA-----ATG 249 (305)
T ss_pred EEEEEeCCCCEEEEE--CCC-CCEEEEEEC-----CCC
Confidence 778888887766654 443 356888888 566
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0017 Score=62.97 Aligned_cols=193 Identities=12% Similarity=0.086 Sum_probs=113.0
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
....|+|||..|+-...| ++|++|++-.... ...+. +.+.+-+.++.|++||+.|+-.
T Consensus 51 ~~~~F~P~gs~~aSgG~D----------------r~I~LWnv~gdce-N~~~l--kgHsgAVM~l~~~~d~s~i~S~--- 108 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSD----------------RAIVLWNVYGDCE-NFWVL--KGHSGAVMELHGMRDGSHILSC--- 108 (338)
T ss_pred EEEEECCCCCeEeecCCc----------------ceEEEEecccccc-ceeee--ccccceeEeeeeccCCCEEEEe---
Confidence 567899999877765543 3799998765432 22222 2345677899999999998732
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE--EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI--IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 348 (734)
+....++.||+++|... ++. .....-... .+..|..++-.. ..+..+.++|..+++ ...+++
T Consensus 109 -gtDk~v~~wD~~tG~~~--------rk~-k~h~~~vNs~~p~rrg~~lv~Sg---sdD~t~kl~D~R~k~---~~~t~~ 172 (338)
T KOG0265|consen 109 -GTDKTVRGWDAETGKRI--------RKH-KGHTSFVNSLDPSRRGPQLVCSG---SDDGTLKLWDIRKKE---AIKTFE 172 (338)
T ss_pred -cCCceEEEEecccceee--------ehh-ccccceeeecCccccCCeEEEec---CCCceEEEEeecccc---hhhccc
Confidence 23378999999995321 111 111111111 222344343322 234568889987654 122222
Q ss_pred CCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEe
Q psy4818 349 EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCN 428 (734)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d 428 (734)
. ...+..+.+.+...-+++..-+ ..|.+||+..++.+..+......|.+++.++++..+. ..++. ..+-++|
T Consensus 173 ~--kyqltAv~f~d~s~qv~sggId--n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll--snsMd--~tvrvwd 244 (338)
T KOG0265|consen 173 N--KYQLTAVGFKDTSDQVISGGID--NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL--SNSMD--NTVRVWD 244 (338)
T ss_pred c--ceeEEEEEecccccceeecccc--CceeeeccccCcceEEeecccCceeeEEeccCCCccc--ccccc--ceEEEEE
Confidence 2 2444555555544444444444 4799999976666667776666788888888886543 23333 2455555
Q ss_pred C
Q psy4818 429 I 429 (734)
Q Consensus 429 ~ 429 (734)
+
T Consensus 245 ~ 245 (338)
T KOG0265|consen 245 V 245 (338)
T ss_pred e
Confidence 5
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00064 Score=71.89 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=93.8
Q ss_pred CCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-cc
Q psy4818 112 QNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KF 190 (734)
Q Consensus 112 ~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~ 190 (734)
+.+-.||+.... |-++....|...-..+...+..+.|.|=-.-+.-+.+ -..+|.+||+.+++......+.. .+
T Consensus 649 dg~i~lWr~~a~-gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as----yd~Ti~lWDl~~~~~~~~l~gHtdqI 723 (1012)
T KOG1445|consen 649 DGQINLWRLTAN-GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS----YDSTIELWDLANAKLYSRLVGHTDQI 723 (1012)
T ss_pred CceEEEEEeccC-CCCcccCCcceeeecccceEEEEEecchhhhHhhhhh----ccceeeeeehhhhhhhheeccCcCce
Confidence 346677877654 3445555555544455567888999985543332222 23689999999987432222221 34
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCC-eeEEEEEEecCCcEEEEEEe
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGR-SLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~-~~~~~~~~SpDG~~l~~~~~ 269 (734)
.+++|||||+.++-+..|. +|++++-.+... .+++.+.-- .....+.|-=||++|+++..
T Consensus 724 f~~AWSpdGr~~AtVcKDg----------------~~rVy~Prs~e~---pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCKDG----------------TLRVYEPRSREQ---PVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred eEEEECCCCcceeeeecCc----------------eEEEeCCCCCCC---ccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 6899999999999887654 577776554422 345443211 12235678899999998876
Q ss_pred cCCCCceEEEEeCCC
Q psy4818 270 NNTQGSDLHYFDLHS 284 (734)
Q Consensus 270 ~~~~~~~i~~~d~~~ 284 (734)
......+|-+||..+
T Consensus 785 dk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQT 799 (1012)
T ss_pred cccchhhhhhhhhhh
Confidence 555556778888776
|
|
| >KOG3253|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00062 Score=72.16 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=100.0
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeE--EEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH--
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGI--YAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN-- 561 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~--v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-- 561 (734)
...|++++.||++...-...|...+.+.|.-.|-+ |..+|++-..+ +.+-....+-.+...++.+.
T Consensus 174 ~~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig----------G~nI~h~ae~~vSf~r~kvlei 243 (784)
T KOG3253|consen 174 PASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG----------GANIKHAAEYSVSFDRYKVLEI 243 (784)
T ss_pred cCCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC----------CcchHHHHHHHHHHhhhhhhhh
Confidence 35689999999883333333344455555544533 44445543110 01111122333333332222
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCC
Q psy4818 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHN 641 (734)
Q Consensus 562 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~ 641 (734)
.+......|.++|+|+|..+++.+...+-|.+-.++...++.+-. ..+. -|..++ ++..
T Consensus 244 ~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~-----vdgp-----rgirDE-----------~Lld 302 (784)
T KOG3253|consen 244 TGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDT-----VDGP-----RGIRDE-----------ALLD 302 (784)
T ss_pred hccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccC-----CCcc-----cCCcch-----------hhHh
Confidence 244456789999999998888888776666554444333332110 0000 133222 1122
Q ss_pred CCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCC
Q psy4818 642 IKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 642 ~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~ 704 (734)
++.| +|++.|.+|.++++..-+++.+++++. +++++..+++|.+.
T Consensus 303 -------mk~P-VLFV~Gsnd~mcspn~ME~vreKMqA~----------~elhVI~~adhsma 347 (784)
T KOG3253|consen 303 -------MKQP-VLFVIGSNDHMCSPNSMEEVREKMQAE----------VELHVIGGADHSMA 347 (784)
T ss_pred -------cCCc-eEEEecCCcccCCHHHHHHHHHHhhcc----------ceEEEecCCCcccc
Confidence 4445 999999999999999999999998765 57899999999875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.067 Score=64.64 Aligned_cols=248 Identities=8% Similarity=0.018 Sum_probs=124.1
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-c----------c---cccCeeEEEcCCcEEEEEEEecC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-K----------N---VKFPSISWTHDHKGFFYNQYCDI 210 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~----------~---~~~~~~~wSpDg~~l~y~~~~~~ 210 (734)
+++++++++..|.++ +... ..|+++|..+........ + . ....++++.+++..||++..
T Consensus 571 ~gvavd~~~g~lyVa-Ds~n---~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt--- 643 (1057)
T PLN02919 571 GKLAIDLLNNRLFIS-DSNH---NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT--- 643 (1057)
T ss_pred ceEEEECCCCeEEEE-ECCC---CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC---
Confidence 468898877665544 4332 478999986543211100 0 0 02367889998876655432
Q ss_pred CCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC--------CC-------CeeEEEEEEecCCcEEEEEEecCCCCc
Q psy4818 211 NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP--------NG-------RSLGLHSEVTDCGRYLLVSTSNNTQGS 275 (734)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~--------~~-------~~~~~~~~~SpDG~~l~~~~~~~~~~~ 275 (734)
....|.++++.++. +..+... .. -..-.+++++|++..|++... ...
T Consensus 644 ------------~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~---~~~ 705 (1057)
T PLN02919 644 ------------ENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA---GQH 705 (1057)
T ss_pred ------------CCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC---CCC
Confidence 12356666654432 1111100 00 001136899998777776532 336
Q ss_pred eEEEEeCCCCCCCcccCCCCceee------eccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec
Q psy4818 276 DLHYFDLHSLPDGKISGKFPLKTV------IPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348 (734)
Q Consensus 276 ~i~~~d~~~~~~~~l~~~~~~~~l------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 348 (734)
.|+++|..++....+......... ......-.. .+++||+.||+... .+.+|.++|++++. ...+..
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~---~~~~~g 779 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGG---SRLLAG 779 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCc---EEEEEe
Confidence 899999876321111000000000 000111111 38899998887543 24679999987654 111111
Q ss_pred CC-------------CC-------ceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-C-----------
Q psy4818 349 ED-------------EN-------RTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-L----------- 396 (734)
Q Consensus 349 ~~-------------~~-------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~----------- 396 (734)
.. +. ....++.+..++.+|++... ...|.+||+.++...+..... .
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--CCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 00 00 00123334444567666543 368999999766543222110 0
Q ss_pred -ceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 397 -GQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 397 -g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
....++..+++++ ++++- +.+ ..+.++|+
T Consensus 858 l~~P~GIavd~dG~-lyVaD-t~N--n~Irvid~ 887 (1057)
T PLN02919 858 LSEPAGLALGENGR-LFVAD-TNN--SLIRYLDL 887 (1057)
T ss_pred cCCceEEEEeCCCC-EEEEE-CCC--CEEEEEEC
Confidence 1223556667764 55543 332 37888998
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00044 Score=69.50 Aligned_cols=192 Identities=10% Similarity=0.141 Sum_probs=114.9
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
+..+.|+|+|++|+..+... ..-+|+.-+-.-+ .+.+. ++.-+....||++|.|++
T Consensus 99 V~~v~WtPeGRRLltgs~SG----------------EFtLWNg~~fnFE--tilQa--HDs~Vr~m~ws~~g~wmi---- 154 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSG----------------EFTLWNGTSFNFE--TILQA--HDSPVRTMKWSHNGTWMI---- 154 (464)
T ss_pred eeeEEEcCCCceeEeecccc----------------cEEEecCceeeHH--HHhhh--hcccceeEEEccCCCEEE----
Confidence 36789999999999877532 2233332111111 12222 233466789999999987
Q ss_pred cCCCCceEEEEeCCCCCCCcccCCCCceeeec-cc-cceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEe
Q psy4818 270 NNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GM-DHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 346 (734)
Q Consensus 270 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~-~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 346 (734)
++....-|.+|+..-. . ...+. .. ..... .+||...+|+-.++ ++.|-++|..-..+ ..+
T Consensus 155 SgD~gG~iKyWqpnmn-n---------Vk~~~ahh~eaIRdlafSpnDskF~t~Sd----Dg~ikiWdf~~~ke---e~v 217 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMN-N---------VKIIQAHHAEAIRDLAFSPNDSKFLTCSD----DGTIKIWDFRMPKE---ERV 217 (464)
T ss_pred EcCCCceEEecccchh-h---------hHHhhHhhhhhhheeccCCCCceeEEecC----CCeEEEEeccCCch---hhe
Confidence 3233356777776541 0 11111 11 11222 38887666654443 34588888765442 223
Q ss_pred ecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEE
Q psy4818 347 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYH 426 (734)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~ 426 (734)
+.+. +..+..+.|-....++++..++. -+.+||..+|..+-.+......|..+.++++++ ++.+.+... .+-.
T Consensus 218 L~GH-gwdVksvdWHP~kgLiasgskDn--lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~---~~kv 290 (464)
T KOG0284|consen 218 LRGH-GWDVKSVDWHPTKGLIASGSKDN--LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQ---SCKV 290 (464)
T ss_pred eccC-CCCcceeccCCccceeEEccCCc--eeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEccCCc---eEEE
Confidence 3333 34456666665578888887774 789999999988767766666788899999884 444444332 4666
Q ss_pred EeC
Q psy4818 427 CNI 429 (734)
Q Consensus 427 ~d~ 429 (734)
+|+
T Consensus 291 ~Di 293 (464)
T KOG0284|consen 291 FDI 293 (464)
T ss_pred Eeh
Confidence 776
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00034 Score=64.46 Aligned_cols=98 Identities=11% Similarity=0.031 Sum_probs=64.9
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 569 (734)
++|++-|-.|+. .+...++..|+++|+.|+-+|-+- -|.. ....+....|+.+.+++..++ -..+|
T Consensus 4 ~~v~~SGDgGw~---~~d~~~a~~l~~~G~~VvGvdsl~------Yfw~---~rtP~~~a~Dl~~~i~~y~~~--w~~~~ 69 (192)
T PF06057_consen 4 LAVFFSGDGGWR---DLDKQIAEALAKQGVPVVGVDSLR------YFWS---ERTPEQTAADLARIIRHYRAR--WGRKR 69 (192)
T ss_pred EEEEEeCCCCch---hhhHHHHHHHHHCCCeEEEechHH------HHhh---hCCHHHHHHHHHHHHHHHHHH--hCCce
Confidence 344444433443 455667788899999999999542 1121 112234467777777776655 23468
Q ss_pred EEEEEcChHHHHHHHHHhcCCCc----eeEEEEcCC
Q psy4818 570 ITIMGGSNGGLLVGACLNQRPEL----YGAALILVG 601 (734)
Q Consensus 570 i~i~G~S~GG~~~~~~~~~~p~~----~~a~v~~~~ 601 (734)
+.++|.|.|+=+...+.++-|.- ++.+++.+|
T Consensus 70 vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p 105 (192)
T PF06057_consen 70 VVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSP 105 (192)
T ss_pred EEEEeecCCchhHHHHHhhCCHHHHhheeEEEEecc
Confidence 99999999999999999988874 455555554
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=64.28 Aligned_cols=209 Identities=18% Similarity=0.229 Sum_probs=118.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC------------CC-----cccccc-ccc-ccCeeEEEcCCcEEEE
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT------------GK-----DYPEVL-KNV-KFPSISWTHDHKGFFY 204 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~------------g~-----~~~~~~-~~~-~~~~~~wSpDg~~l~y 204 (734)
....+|||||..+| .|+-...|.++|++. |. ++..+. ..+ .+..+.|.|-..-|+-
T Consensus 115 cR~aafs~DG~lvA-----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVA-----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred eeeeeeCCCCcEEE-----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 45689999999998 455667899999861 11 111111 111 1256777776643333
Q ss_pred EEEecCCCCCCCCcccccCCcEEEEEECCCCCCC-CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC
Q psy4818 205 NQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK-DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH 283 (734)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~-~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~ 283 (734)
.+. ...|.+.+......+ .-.+|++. ..+.++++.|.|.+|++- ++...+.++|++
T Consensus 190 ~sr----------------D~tvKlFDfsK~saKrA~K~~qd~---~~vrsiSfHPsGefllvg----TdHp~~rlYdv~ 246 (430)
T KOG0640|consen 190 GSR----------------DNTVKLFDFSKTSAKRAFKVFQDT---EPVRSISFHPSGEFLLVG----TDHPTLRLYDVN 246 (430)
T ss_pred ccC----------------CCeEEEEecccHHHHHHHHHhhcc---ceeeeEeecCCCceEEEe----cCCCceeEEecc
Confidence 332 225666666543221 11234332 245689999999999863 334678889998
Q ss_pred CCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec-CCCCceeEEEEEe
Q psy4818 284 SLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP-EDENRTLDVVAAV 361 (734)
Q Consensus 284 ~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 361 (734)
+ .+++....|-. ........+ .++.|+ +|+....+ +.|-+||--+.. +.+-+. ..++..+.+..++
T Consensus 247 T--~QcfvsanPd~---qht~ai~~V~Ys~t~~-lYvTaSkD---G~IklwDGVS~r---Cv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 247 T--YQCFVSANPDD---QHTGAITQVRYSSTGS-LYVTASKD---GAIKLWDGVSNR---CVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred c--eeEeeecCccc---ccccceeEEEecCCcc-EEEEeccC---CcEEeeccccHH---HHHHHHhhcCCceeeeEEEc
Confidence 8 22221111111 011122223 666654 77776654 357777754332 222222 2234556677777
Q ss_pred eCCEEEEEEEeCCceeEEEEECCCCceeeeeCC
Q psy4818 362 ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL 394 (734)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~ 394 (734)
.+++.+++...+ +.+++|.+.+|..+++.+.
T Consensus 315 kn~kyiLsSG~D--S~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 315 KNGKYILSSGKD--STVKLWEISTGRMLKEYTG 345 (430)
T ss_pred cCCeEEeecCCc--ceeeeeeecCCceEEEEec
Confidence 767777766555 6899999988987766654
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=66.80 Aligned_cols=228 Identities=9% Similarity=0.016 Sum_probs=122.6
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+...+....||+||.++. +|+....|.+|+..-........ ....+..+++||....|+-++.|.
T Consensus 137 HDs~Vr~m~ws~~g~wmi-----SgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg--------- 202 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMI-----SGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDG--------- 202 (464)
T ss_pred hcccceeEEEccCCCEEE-----EcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCC---------
Confidence 345688999999999876 23333578888865432211111 111235788999666565555433
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|.+|+.--...+.++ ... .-..-++.|.|.-..|+- . +..+-|.+||..+|. +| -.
T Consensus 203 -------~ikiWdf~~~kee~vL--~GH--gwdVksvdWHP~kgLias-g---skDnlVKlWDprSg~--cl------~t 259 (464)
T KOG0284|consen 203 -------TIKIWDFRMPKEERVL--RGH--GWDVKSVDWHPTKGLIAS-G---SKDNLVKLWDPRSGS--CL------AT 259 (464)
T ss_pred -------eEEEEeccCCchhhee--ccC--CCCcceeccCCccceeEE-c---cCCceeEeecCCCcc--hh------hh
Confidence 5777776655544333 221 112347899998776662 2 233689999998842 22 11
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
+-......... |++++.+|+-.+. +..+-++|+.+-+ .+...-.+. ..+......+-...|+.+...+| .
T Consensus 260 lh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mk--El~~~r~Hk-kdv~~~~WhP~~~~lftsgg~Dg--s 330 (464)
T KOG0284|consen 260 LHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMK--ELFTYRGHK-KDVTSLTWHPLNESLFTSGGSDG--S 330 (464)
T ss_pred hhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhH--HHHHhhcch-hhheeeccccccccceeeccCCC--c
Confidence 22222222233 9999976664433 3457778886422 112111122 22322222222245666655554 5
Q ss_pred EEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEE
Q psy4818 378 MDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~ 414 (734)
|+.|.+...+.+..+... ++.|-++.+.|=| .++.+
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG-hil~t 367 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG-HILAT 367 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccc-eeEee
Confidence 666665323333334322 6677778887766 34444
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0063 Score=64.05 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=133.5
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
.++||+|....|..+. ..++++++.+-+...-.+....++.+..||-+.--+....-.. ..+.+.
T Consensus 130 ~~qfs~dEsl~arlv~------nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe---------~kGaPa 194 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVS------NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE---------KKGAPA 194 (566)
T ss_pred ccccccchhhhhhhhc------ceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC---------CCCCCc
Confidence 5889999998887663 3588888776332222233334578889987553333333211 134455
Q ss_pred EEEEEECCCCCCCC----eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC--------CceEEEEeCCCCCCCcccCC
Q psy4818 226 KIYYHVLGTEQDKD----IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ--------GSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 226 ~l~~~~l~t~~~~~----~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.++......... ...|.. .-....|.+-|.-|++.....-+ ...||+++.++ ..
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFka-----dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s------ 262 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKA-----DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ES------ 262 (566)
T ss_pred EEEEeccccccccchhhhcccccc-----ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ce------
Confidence 66666655221111 111111 11467899999888766543211 16899999885 21
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
....| ......+.+ |+++|+.+.++-.-- -.++-.+|++... .--++++++..+ .+.+.++.+++..-.
T Consensus 263 -~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfM--PAkvtifnlr~~~----v~df~egpRN~~--~fnp~g~ii~lAGFG 332 (566)
T KOG2315|consen 263 -VSVPL-LKEGPVHDVTWSPSGREFAVVYGFM--PAKVTIFNLRGKP----VFDFPEGPRNTA--FFNPHGNIILLAGFG 332 (566)
T ss_pred -EEEec-CCCCCceEEEECCCCCEEEEEEecc--cceEEEEcCCCCE----eEeCCCCCccce--EECCCCCEEEEeecC
Confidence 11122 223445555 999999988775421 2357777876542 333444434332 222344555555556
Q ss_pred CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSF 418 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~ 418 (734)
+-...+.+||..+-+.+..+.....+ -+.++|||..++...+++
T Consensus 333 NL~G~mEvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLTATTAP 376 (566)
T ss_pred CCCCceEEEeccchhhccccccCCce--EEEEcCCCcEEEEEeccc
Confidence 66779999999775554444433333 477899998777666553
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0092 Score=57.18 Aligned_cols=188 Identities=9% Similarity=0.072 Sum_probs=102.9
Q ss_pred cCeeEEEcC-CcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC-CCeeEEecCCCCeeEEEEEEecCCcEEEEE
Q psy4818 190 FPSISWTHD-HKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD-KDIPVVEFPNGRSLGLHSEVTDCGRYLLVS 267 (734)
Q Consensus 190 ~~~~~wSpD-g~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~-~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~ 267 (734)
...++|.|- |. |+++... ...|.++...++.. .-+.+..+ .+...+.+++|||.|++|+-.
T Consensus 17 ~W~~awhp~~g~-ilAscg~---------------Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 17 VWSVAWHPGKGV-ILASCGT---------------DKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred EEEEEeccCCce-EEEeecC---------------CceEEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEEEEe
Confidence 468999997 54 4444432 22677777764221 11112222 233456789999999999854
Q ss_pred EecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceE
Q psy4818 268 TSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT 345 (734)
Q Consensus 268 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 345 (734)
+-+ ..+-+|.-.+++ ......+.+.+.... .|+++|..|+-.+.. -.++.+.++......+..
T Consensus 80 SFD----~t~~Iw~k~~~e-------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRD----KSVWiWe~deddEfec~a 144 (312)
T KOG0645|consen 80 SFD----ATVVIWKKEDGE-------FECVATLEGHENEVKCVAWSASGNYLATCSRD----KSVWIWEIDEDDEFECIA 144 (312)
T ss_pred ecc----ceEEEeecCCCc-------eeEEeeeeccccceeEEEEcCCCCEEEEeeCC----CeEEEEEecCCCcEEEEe
Confidence 322 334444333311 111222333333332 399999988765543 247777776544333444
Q ss_pred eecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECC-CCc--eeeeeCCCCceEEeeccCcccceEE
Q psy4818 346 LIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLN-TGK--RLHSFPLDLGQITHISGRRKYNEVF 412 (734)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~-~g~--~~~~l~~~~g~v~~~~~~~d~~~l~ 412 (734)
++.+. ..-+..+.+.+-.-|+++.+.+. .|.+|.-. ++. ..+.|.....++-++.+++.|.++.
T Consensus 145 VL~~H-tqDVK~V~WHPt~dlL~S~SYDn--TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 145 VLQEH-TQDVKHVIWHPTEDLLFSCSYDN--TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred eeccc-cccccEEEEcCCcceeEEeccCC--eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 44433 23334444544357888888774 44444433 333 3456666666777788888776664
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0033 Score=63.57 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=108.8
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
...++|.|||++.+.--. ....+-|+|++.++.+.+. ..+|. .-+-|.++ +++-...|.
T Consensus 98 ~~~~ls~dgk~~~V~N~T---Pa~SVtVVDl~~~kvv~ei~~PGC~-~iyP~~~~--~F~~lC~DG-------------- 157 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFT---PATSVTVVDLAAKKVVGEIDTPGCW-LIYPSGNR--GFSMLCGDG-------------- 157 (342)
T ss_dssp GGEEE-TTSSEEEEEEES---SSEEEEEEETTTTEEEEEEEGTSEE-EEEEEETT--EEEEEETTS--------------
T ss_pred cceEEccCCcEEEEEccC---CCCeEEEEECCCCceeeeecCCCEE-EEEecCCC--ceEEEecCC--------------
Confidence 458999999998765432 2368999999999876532 44452 22334333 232222111
Q ss_pred CcEEEEEECCCCCCCC---eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 224 GQKIYYHVLGTEQDKD---IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~---~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.+..+.++...... ..+|...+++ .+..+.++.++.+++|.+.. ..||-+|+.+ ....+ ..+|..+.
T Consensus 158 --sl~~v~Ld~~Gk~~~~~t~~F~~~~dp-~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg-~~~~~--~~~~~~~t 227 (342)
T PF06433_consen 158 --SLLTVTLDADGKEAQKSTKVFDPDDDP-LFEHPAYSRDGGRLYFVSYE----GNVYSADLSG-DSAKF--GKPWSLLT 227 (342)
T ss_dssp --CEEEEEETSTSSEEEEEEEESSTTTS--B-S--EEETTTTEEEEEBTT----SEEEEEEETT-SSEEE--EEEEESS-
T ss_pred --ceEEEEECCCCCEeEeeccccCCCCcc-cccccceECCCCeEEEEecC----CEEEEEeccC-Ccccc--cCcccccC
Confidence 23444444221111 1234333333 55567888877777776543 5899999887 22221 11222222
Q ss_pred c-cccceEE-----E--EEecCCeEEEEeCCC------CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCE-
Q psy4818 301 P-GMDHHHE-----I--IANNGPELIVKTTKN------APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNK- 365 (734)
Q Consensus 301 ~-~~~~~~~-----~--~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 365 (734)
. +...+|. . +.+..++||++.... .+...|+.+|+++++. ..-++-. ..+.++..+.++.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr---v~Ri~l~--~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR---VARIPLE--HPIDSIAVSQDDKP 302 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE---EEEEEEE--EEESEEEEESSSS-
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE---EEEEeCC--CccceEEEccCCCc
Confidence 1 1122333 2 556677888886532 2234799999988752 2222211 1222444444333
Q ss_pred EEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 366 LIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 366 l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
+++.... +...|+++|..+|+.++.+.
T Consensus 303 ~L~~~~~-~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSA-GDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEET-TTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcC-CCCeEEEEeCcCCcEEeehh
Confidence 4444433 34689999999999877775
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.013 Score=56.12 Aligned_cols=230 Identities=13% Similarity=0.168 Sum_probs=127.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEc----CCcEEEEEEEecCCCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTH----DHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSp----Dg~~l~y~~~~~~~~~~~~~ 217 (734)
-.+..+.+.-||. |.|+.... ...-||=.-.|+.+-.-.+. .+..|+- |.+.+.-.+.|
T Consensus 11 RplTqiKyN~eGD-LlFscaKD----~~~~vw~s~nGerlGty~GH---tGavW~~Did~~s~~liTGSAD--------- 73 (327)
T KOG0643|consen 11 RPLTQIKYNREGD-LLFSCAKD----STPTVWYSLNGERLGTYDGH---TGAVWCCDIDWDSKHLITGSAD--------- 73 (327)
T ss_pred cccceEEecCCCc-EEEEecCC----CCceEEEecCCceeeeecCC---CceEEEEEecCCcceeeecccc---------
Confidence 4466778888888 45666433 23444444456655322222 3445543 44555444432
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC-CceEEEEeCCCCCCCcccCCCCc
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ-GSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
+.+.+|++.+++ . +...+- +.-+..+.||++|.++++.....-. ...|.++|+.. ....+..+.|.
T Consensus 74 -------~t~kLWDv~tGk--~--la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~-~~~~~~s~ep~ 140 (327)
T KOG0643|consen 74 -------QTAKLWDVETGK--Q--LATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD-DSSDIDSEEPY 140 (327)
T ss_pred -------ceeEEEEcCCCc--E--EEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC-ChhhhcccCce
Confidence 367788888875 2 232221 2245578999999999987654333 27888898875 22233334445
Q ss_pred eeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC--CCceeEEEEEeeCCEEEEEEEeC
Q psy4818 297 KTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED--ENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 297 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
.++......... .|+|-++.|+.- . .++.|-.+|+.++. .++... ....+..+.+..+...++..+.+
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~G-h---e~G~is~~da~~g~-----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAG-H---EDGSISIYDARTGK-----ELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEe-c---CCCcEEEEEcccCc-----eeeechhhhccccccccccCCcceEEecccC
Confidence 555443333333 499998877642 2 24569999998764 223222 12345666666657777777777
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEE
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFY 413 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~ 413 (734)
. .-.++|..+-+.++..... .-+...+.+|-.+.+++
T Consensus 212 t--takl~D~~tl~v~Kty~te-~PvN~aaisP~~d~Vil 248 (327)
T KOG0643|consen 212 T--TAKLVDVRTLEVLKTYTTE-RPVNTAAISPLLDHVIL 248 (327)
T ss_pred c--cceeeeccceeeEEEeeec-ccccceecccccceEEe
Confidence 4 4455666555554444322 12233344454444443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.033 Score=67.18 Aligned_cols=211 Identities=13% Similarity=0.106 Sum_probs=110.4
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc---------c-------c-ccCeeEEEcCCcEEEEEE
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK---------N-------V-KFPSISWTHDHKGFFYNQ 206 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~---------~-------~-~~~~~~wSpDg~~l~y~~ 206 (734)
-.+++++++|..|.+ .+..+ ..|+++|+.++........ + . ....++++|++..||.+.
T Consensus 626 P~GIavd~~gn~LYV-aDt~n---~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYV-ADTEN---HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEE-EeCCC---ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 357899999987654 44332 4789999887754221100 0 0 124689999776676554
Q ss_pred EecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCC-------------CCeeEEEEEEecCCcEEEEEEecCCC
Q psy4818 207 YCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPN-------------GRSLGLHSEVTDCGRYLLVSTSNNTQ 273 (734)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~-------------~~~~~~~~~~SpDG~~l~~~~~~~~~ 273 (734)
.. ..+|++++..++.. .++.... .-..-.+++++|||++|++... .
T Consensus 702 ~~---------------~~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~ 760 (1057)
T PLN02919 702 AG---------------QHQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---E 760 (1057)
T ss_pred CC---------------CCeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC---C
Confidence 21 33677777654321 1111100 0001236889999999887542 3
Q ss_pred CceEEEEeCCCCCCCcccCCCCc--eee--ecc---------ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 274 GSDLHYFDLHSLPDGKISGKFPL--KTV--IPG---------MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 274 ~~~i~~~d~~~~~~~~l~~~~~~--~~l--~~~---------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
.+.|+++|++++....+....+. ..+ ... ...-.. .++++|+ +|+. + ..+++|.++|.+++.
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA-D--s~N~rIrviD~~tg~ 836 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA-D--SYNHKIKKLDPATKR 836 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE-E--CCCCEEEEEECCCCe
Confidence 36899999886321101000000 000 000 000011 2778876 5543 3 235679999987654
Q ss_pred CCCceEeecCCC------------CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 340 EKNWKTLIPEDE------------NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 340 ~~~~~~l~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
+..+..... .....++.+..++++|++-.. ...|.++|+.+++.
T Consensus 837 ---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 ---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--NSLIRYLDLNKGEA 892 (1057)
T ss_pred ---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--CCEEEEEECCCCcc
Confidence 233322110 012234444444677665433 36899999977764
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.012 Score=57.60 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=124.7
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCc--EEEEEEEecCCCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHK--GFFYNQYCDINGTADGT 217 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~--~l~y~~~~~~~~~~~~~ 217 (734)
..++..+++| |.++| +|+..-+|+++|+.....+...... .....+.|.++-. .|+-.+.|.
T Consensus 43 ~~sitavAVs--~~~~a-----SGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG-------- 107 (362)
T KOG0294|consen 43 AGSITALAVS--GPYVA-----SGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG-------- 107 (362)
T ss_pred ccceeEEEec--ceeEe-----ccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC--------
Confidence 3456666665 88777 4444568999999876654332222 1235666777654 455444322
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|..|+.+.- .++-....+.+-+.+++..|.||. |++... ...+.+|++-.|....+ .
T Consensus 108 --------~i~iw~~~~W----~~~~slK~H~~~Vt~lsiHPS~KL-ALsVg~---D~~lr~WNLV~Gr~a~v------~ 165 (362)
T KOG0294|consen 108 --------HIIIWRVGSW----ELLKSLKAHKGQVTDLSIHPSGKL-ALSVGG---DQVLRTWNLVRGRVAFV------L 165 (362)
T ss_pred --------cEEEEEcCCe----EEeeeecccccccceeEecCCCce-EEEEcC---CceeeeehhhcCcccee------e
Confidence 5667766542 123222333344667899999985 444432 25788999887543211 1
Q ss_pred eeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 298 TVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 298 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
+| .. ....-.|+|.|+++++...+ +|-.+.+++..- +.++.-+ ...+ .+.+.+++.+++ ..++ ..
T Consensus 166 ~L-~~-~at~v~w~~~Gd~F~v~~~~-----~i~i~q~d~A~v--~~~i~~~--~r~l-~~~~l~~~~L~v-G~d~--~~ 230 (362)
T KOG0294|consen 166 NL-KN-KATLVSWSPQGDHFVVSGRN-----KIDIYQLDNASV--FREIENP--KRIL-CATFLDGSELLV-GGDN--EW 230 (362)
T ss_pred cc-CC-cceeeEEcCCCCEEEEEecc-----EEEEEecccHhH--hhhhhcc--ccce-eeeecCCceEEE-ecCC--ce
Confidence 11 11 11112399999999886543 244444433220 1222211 1122 233344344444 3333 46
Q ss_pred EEEEECCCCceeeeeCCCCceEEeec-cCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHIS-GRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~-~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+|-.++..+..+......|-++. ......+++++.+|.. .+.+||+
T Consensus 231 i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~ 280 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDI 280 (362)
T ss_pred EEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc---eEEEEEc
Confidence 77888866666556655544443333 2222346777777754 5666666
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0058 Score=61.09 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=94.3
Q ss_pred eCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCC--ce--EEEEEEECCCCCcccccccccccCeeEEE
Q psy4818 121 RNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGS--DW--NTLHIKDVDTGKDYPEVLKNVKFPSISWT 196 (734)
Q Consensus 121 ~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~--~~--~~l~v~dl~~g~~~~~~~~~~~~~~~~wS 196 (734)
+..++..+++.+... ............+.|||+ |.|+...... .. ..||.++.. ++.......-....+++||
T Consensus 66 d~~~g~~~~~~~~~~-~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 66 DPDTGKVTVLADLPD-GGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFS 142 (246)
T ss_dssp ETTTTEEEEEEEEET-TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEE
T ss_pred ecCCCcEEEEeeccC-CCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEEC
Confidence 555666677766521 111346678899999999 5555443211 11 679999988 5532211111123689999
Q ss_pred cCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC--C-CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC
Q psy4818 197 HDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD--K-DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ 273 (734)
Q Consensus 197 pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~--~-~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 273 (734)
||++.||++.. ...+|++.+++.... . ...+.+.+.......++++..+|+ |++... .
T Consensus 143 ~dg~~lyv~ds---------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~---~ 203 (246)
T PF08450_consen 143 PDGKTLYVADS---------------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW---G 203 (246)
T ss_dssp TTSSEEEEEET---------------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE---T
T ss_pred Ccchheeeccc---------------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc---C
Confidence 99998887653 234799998864432 1 122333333333566889999997 343332 2
Q ss_pred CceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEE-ecCCeEEEEeC
Q psy4818 274 GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIA-NNGPELIVKTT 322 (734)
Q Consensus 274 ~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~ 322 (734)
...|++++.++ . ....+......... .|. ++.+.||+++.
T Consensus 204 ~~~I~~~~p~G-~--------~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 GGRIVVFDPDG-K--------LLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTEEEEEETTS-C--------EEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCEEEEECCCc-c--------EEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 36899999875 2 11112111112222 253 67778888764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0091 Score=60.84 Aligned_cols=184 Identities=12% Similarity=0.201 Sum_probs=109.7
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc---ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.+.+.+..|.|.|+..++++ ..+-..|.++|..+... ...+.+.+.++.||| +.|...-
T Consensus 305 ~V~~ls~h~tgeYllsAs~d-----~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt----------- 366 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASND-----GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGT----------- 366 (506)
T ss_pred cceeeeeccCCcEEEEecCC-----ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEeccC-----------
Confidence 36788999999999877653 35667788888864422 233446789999998 4444321
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
....|.+|++..+. .+.-| +.+.+-+..++||.+|-||+....+ ..|.+||+.... .+..+
T Consensus 367 ---~d~~vkiwdlks~~--~~a~F--pght~~vk~i~FsENGY~Lat~add----~~V~lwDLRKl~--------n~kt~ 427 (506)
T KOG0289|consen 367 ---PDGVVKIWDLKSQT--NVAKF--PGHTGPVKAISFSENGYWLATAADD----GSVKLWDLRKLK--------NFKTI 427 (506)
T ss_pred ---CCceEEEEEcCCcc--ccccC--CCCCCceeEEEeccCceEEEEEecC----CeEEEEEehhhc--------cccee
Confidence 12368888887654 22222 3344456789999999999976543 349999997621 22222
Q ss_pred e-ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc-eeEEEEEeeCCEEEEEE
Q psy4818 300 I-PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR-TLDVVAAVANNKLIVHY 370 (734)
Q Consensus 300 ~-~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~ 370 (734)
. ........+ |...|..+.+. +..-+||.++-.+.. |+.+..-.+.. ....+.+.....+++..
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~----g~~l~Vy~~~k~~k~---W~~~~~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIA----GSDLQVYICKKKTKS---WTEIKELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred eccccccceeEEEcCCCCeEEee----cceeEEEEEeccccc---ceeeehhhhcccccceeeecccceEEeec
Confidence 2 122222222 77777777654 334567877755544 87665443222 23344444423344443
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=71.81 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=64.1
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.|+++||+++....+............. |.++.+|.||.|... . . ..........+..+.+.- ..
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~---~---~~~~~~~~~~~~~~~~~~--~~ 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----P---A---GYSLSAYADDLAALLDAL--GL 87 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEecccCCCCCC----c---c---cccHHHHHHHHHHHHHHh--CC
Confidence 458999999987665443311111112222 999999999855432 0 0 111122233333333332 22
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.++.++|+|+||.++..++.++|+.++.+|+..+.
T Consensus 88 ~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred CceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 23999999999999999999999988988887754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0098 Score=61.91 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=133.8
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc---cccccccCeeEEEcC--CcEEEEEEEecCCCCCCCCccc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE---VLKNVKFPSISWTHD--HKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~---~~~~~~~~~~~wSpD--g~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.+.||-|.+++|..+. ..|++.++ |+..-+. .+....+..+.|||- +..|+|..-..
T Consensus 136 ~~k~s~~D~y~ARvv~------~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk----------- 197 (561)
T COG5354 136 VLKFSIDDKYVARVVG------SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK----------- 197 (561)
T ss_pred eeeeeecchhhhhhcc------CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEcccc-----------
Confidence 5789999999998853 35888887 4432111 111123468899996 45677765321
Q ss_pred ccCCcEEEEEECCCCCCC-CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCC-----CC--ceEEEEeCCCCCCCcccC
Q psy4818 221 AHMGQKIYYHVLGTEQDK-DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT-----QG--SDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~-~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~~--~~i~~~d~~~~~~~~l~~ 292 (734)
.+.+.++.++.+...... ...+|... ...+.|.+.|++|++...... .. +.||++++...
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~-----~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------- 265 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVS-----GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------- 265 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeec-----ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-------
Confidence 345566777776633211 11123221 246899999999998765433 12 78999998751
Q ss_pred CCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEE
Q psy4818 293 KFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYI 371 (734)
Q Consensus 293 ~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (734)
..+....-.+..+.+ |+|+++++.+++.-. ...+..+|+.+. +.-.+++.....+ ++.+.++++++..-
T Consensus 266 --~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~--pa~~s~~~lr~N----l~~~~Pe~~rNT~--~fsp~~r~il~agF 335 (561)
T COG5354 266 --SIPVEKDLKDPVHDFTWEPLSSRFAVISGYM--PASVSVFDLRGN----LRFYFPEQKRNTI--FFSPHERYILFAGF 335 (561)
T ss_pred --ccceeccccccceeeeecccCCceeEEeccc--ccceeecccccc----eEEecCCcccccc--cccCcccEEEEecC
Confidence 122221112334445 999999999887432 234677777653 3556666544332 22334466676666
Q ss_pred eCCceeEEEEECCCCce--eeeeCCCCceEEeeccCcccceEEEEEecC
Q psy4818 372 QNVRSVMDLHDLNTGKR--LHSFPLDLGQITHISGRRKYNEVFYGFTSF 418 (734)
Q Consensus 372 ~~~~~~l~~~dl~~g~~--~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~ 418 (734)
.+-...+.+|+.. |+- ...+.....++ ..++||+..+...+.|.
T Consensus 336 ~nl~gni~i~~~~-~rf~~~~~~~~~n~s~--~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 336 DNLQGNIEIFDPA-GRFKVAGAFNGLNTSY--CDWSPDGQFYDTDTTSE 381 (561)
T ss_pred CccccceEEeccC-CceEEEEEeecCCceE--eeccCCceEEEecCCCc
Confidence 6666788899884 442 11232222222 35778876665555544
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0019 Score=60.85 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=115.0
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc--ccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV--KFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~--~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.-+...+||.|.++|. .|+...-|+|+|+..-+.-+....+. .+..+.|....+.|+-.+.+.
T Consensus 101 hivk~~af~~ds~~ll-----tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~---------- 165 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLL-----TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK---------- 165 (334)
T ss_pred heeeeEEecccchhhh-----ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC----------
Confidence 3467889999999887 33334578899987655322222111 224678988888887765432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|++|+..++..-..+-+.. ...++..|+||++|.+.- .+.|..||..+.. .|+. ...+.
T Consensus 166 ------tVRLWD~rTgt~v~sL~~~s-----~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~--~lKs-~k~P~- 225 (334)
T KOG0278|consen 166 ------TVRLWDHRTGTEVQSLEFNS-----PVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG--LLKS-YKMPC- 225 (334)
T ss_pred ------ceEEEEeccCcEEEEEecCC-----CCcceeeccCCCEEEEec-----CceeEEecccccc--ceee-ccCcc-
Confidence 57888888775333222221 235689999999988642 2567888887721 1100 00000
Q ss_pred eccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee-cCCCCceeEEEEEeeCCEEEEEEEeCCceeE
Q psy4818 300 IPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI-PEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378 (734)
Q Consensus 300 ~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 378 (734)
.......+|+. .+|+..+ ..+.+|++|..+++. .... .+. ...+-.+.+..++-+|.+.+++|.-+|
T Consensus 226 ----nV~SASL~P~k-~~fVaGg---ed~~~~kfDy~TgeE---i~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 226 ----NVESASLHPKK-EFFVAGG---EDFKVYKFDYNTGEE---IGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ----ccccccccCCC-ceEEecC---cceEEEEEeccCCce---eeecccCC-CCceEEEEECCCCceeeccCCCceEEE
Confidence 00111266765 5665444 467899999998762 2222 232 344555666666889999988875444
Q ss_pred EEEE
Q psy4818 379 DLHD 382 (734)
Q Consensus 379 ~~~d 382 (734)
+...
T Consensus 294 WQt~ 297 (334)
T KOG0278|consen 294 WQTT 297 (334)
T ss_pred EEec
Confidence 4443
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.06 Score=58.17 Aligned_cols=236 Identities=12% Similarity=0.139 Sum_probs=136.1
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc---cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL---KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~---~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
+.++++|.+.+.||.+... ..|-+|++..+=.+...+ .+....+++|+ +|.+|+-+....
T Consensus 28 I~slA~s~kS~~lAvsRt~-----g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg----------- 90 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTD-----GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG----------- 90 (691)
T ss_pred eEEEEEeccCCceeeeccC-----CcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCc-----------
Confidence 6789999999999976542 358888888764332222 22234789998 455777665432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|..|++-+... +...+. ..+-+.+++.+|.+..+++...+ ..++.++...+ .+ .....+
T Consensus 91 -----~i~EwDl~~lk~--~~~~d~--~gg~IWsiai~p~~~~l~Igcdd----Gvl~~~s~~p~---~I----~~~r~l 150 (691)
T KOG2048|consen 91 -----SITEWDLHTLKQ--KYNIDS--NGGAIWSIAINPENTILAIGCDD----GVLYDFSIGPD---KI----TYKRSL 150 (691)
T ss_pred -----eEEEEecccCce--eEEecC--CCcceeEEEeCCccceEEeecCC----ceEEEEecCCc---eE----EEEeec
Confidence 677788776542 222222 23356678899999988875332 35666665541 12 122222
Q ss_pred ccccc-eEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC-----C-CCceeEEEEEeeCCEEEEEEEe
Q psy4818 301 PGMDH-HHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-----D-ENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 301 ~~~~~-~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-----~-~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
..... .... |.+++.+|+--+ .++.|-.+|+.++.. ...++.+ . +...+-++.+.. +..+++.
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs----~Dg~Iriwd~~~~~t--~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sg-- 221 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGS----IDGVIRIWDVKSGQT--LHIITMQLDRLSKREPTIVWSVLFLR-DSTIASG-- 221 (691)
T ss_pred ccccceEEEEEecCCccEEEecc----cCceEEEEEcCCCce--EEEeeecccccccCCceEEEEEEEee-cCcEEEe--
Confidence 21112 2233 888887777433 245688889876541 1111111 1 112222233333 2334443
Q ss_pred CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|....+..||...|..++.+....+.|.++..++++++++.+. ..| .++.|..
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG---vd~-~ii~~~~ 274 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG---VDP-KIIQYSL 274 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc---CCC-ceEEEEe
Confidence 3345899999988887666665566777788887777776433 333 4667776
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00049 Score=77.97 Aligned_cols=251 Identities=13% Similarity=0.089 Sum_probs=140.7
Q ss_pred eeEEeCCCCc-EEEEEEe-------CCCCceEEEEEEECCCCCc----ccccccccccCeeEEEcCCcE---EEEEEEec
Q psy4818 145 KLYAFSDNGK-HFAYCLS-------KSGSDWNTLHIKDVDTGKD----YPEVLKNVKFPSISWTHDHKG---FFYNQYCD 209 (734)
Q Consensus 145 ~~~~~SPDG~-~la~~~~-------~~g~~~~~l~v~dl~~g~~----~~~~~~~~~~~~~~wSpDg~~---l~y~~~~~ 209 (734)
..++|||++. +||-... .+-+-.-+|+..|..+.+. +.......+|..++|++-|+. |.....+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e- 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE- 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecccc-
Confidence 3589999996 3432211 1112224677777766552 211223446788999998876 3333321
Q ss_pred CCCCCCCCcccccCCcEEEEEECCC--CCCCCeeEEecCCCCeeEEEEEEecCCc-EEEEEEecCCCCceEEEEeCCCCC
Q psy4818 210 INGTADGTETTAHMGQKIYYHVLGT--EQDKDIPVVEFPNGRSLGLHSEVTDCGR-YLLVSTSNNTQGSDLHYFDLHSLP 286 (734)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~l~t--~~~~~~~v~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~i~~~d~~~~~ 286 (734)
...|-+++... ...+..++.+...+.+-+.++.|++.+. .|+ ++.+..+|++||+.. .
T Consensus 89 --------------dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA----SGa~~geI~iWDlnn-~ 149 (1049)
T KOG0307|consen 89 --------------DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA----SGADDGEILIWDLNK-P 149 (1049)
T ss_pred --------------CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee----ccCCCCcEEEeccCC-c
Confidence 11455555443 1111122333334455677899999987 555 445558999999987 3
Q ss_pred CCcccCCCCceeeeccccceEEE--EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC-
Q psy4818 287 DGKISGKFPLKTVIPGMDHHHEI--IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN- 363 (734)
Q Consensus 287 ~~~l~~~~~~~~l~~~~~~~~~~--~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 363 (734)
....+. ........... |...-++|+-.. ..+++...||+...+ .+..+.....+.....+.|..+
T Consensus 150 ~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~---s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 150 ETPFTP------GSQAPPSEIKCLSWNRKVSHILASG---SPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred CCCCCC------CCCCCcccceEeccchhhhHHhhcc---CCCCCceeccccCCC--cccccccCCCccceeeeeeCCCC
Confidence 222111 11111112222 433333444222 335578899997653 2344443333333455555443
Q ss_pred -CEEEEEEEeCCceeEEEEECCCC-ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 364 -NKLIVHYIQNVRSVMDLHDLNTG-KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 -~~l~~~~~~~~~~~l~~~dl~~g-~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++++...++..+.|.+||+..- ..++.++.+...|.++++.+.+.++++++.-.. +++.++.
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~ 283 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNP 283 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC---CeeEecC
Confidence 36777777888889999998433 234566656444558999988878887654443 6788887
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0025 Score=64.12 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=70.9
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHh---cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHH-HHHHHH--
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRH---FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA-AEYMIN-- 561 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~-- 561 (734)
.++||++-|-||... |-..++..|.+ ..+.|++..+.|....... ..........+++|.+.- ++++.+
T Consensus 2 ~~li~~IPGNPGlv~---fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE---FYEEFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCChHH---HHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 468899998887642 32334444432 3799999999885433221 000012344566776654 333322
Q ss_pred -cCCCCCCcEEEEEcChHHHHHHHHHhcCC---CceeEEEEcCCcc
Q psy4818 562 -KKYTKPKYITIMGGSNGGLLVGACLNQRP---ELYGAALILVGAL 603 (734)
Q Consensus 562 -~~~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~~~a~v~~~~~~ 603 (734)
+......++.++|||.|+|+++.++.+.+ ..++.++...|.+
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 21114568999999999999999999998 5678888888854
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0047 Score=64.09 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=103.9
Q ss_pred HHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc-CCcchhccccc---cccCccccc---cc---CCC---C
Q psy4818 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL-VGALDMLRFNK---FTIAYYSES---EF---GSP---N 625 (734)
Q Consensus 559 l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~-~~~~d~~~~~~---~~~~~~~~~---~~---g~~---~ 625 (734)
+.+....+.++.+|.|.|==|..+-.+++-. .+++|++.. .+++++...+. ...|..|.. .| |.. .
T Consensus 163 ~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~ 241 (367)
T PF10142_consen 163 LKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLD 241 (367)
T ss_pred HHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcC
Confidence 3333456788999999999999998888744 466776644 34444432211 112211211 11 221 3
Q ss_pred CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4818 626 NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 626 ~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 705 (734)
.++..+.+.-.+|+...++ ...| -||+.|.+|+...+..+.-++..|. | +..+++.|+++|+...
T Consensus 242 tp~f~~L~~ivDP~~Y~~r----L~~P-K~ii~atgDeFf~pD~~~~y~d~L~---------G-~K~lr~vPN~~H~~~~ 306 (367)
T PF10142_consen 242 TPEFDKLMQIVDPYSYRDR----LTMP-KYIINATGDEFFVPDSSNFYYDKLP---------G-EKYLRYVPNAGHSLIG 306 (367)
T ss_pred CHHHHHHHHhcCHHHHHHh----cCcc-EEEEecCCCceeccCchHHHHhhCC---------C-CeeEEeCCCCCcccch
Confidence 3444455566789988765 6777 8999999999999999999999885 3 4578999999999875
Q ss_pred chHHhHHHHHHHHHHHHHHcCCCCCCC
Q psy4818 706 PLMKSIEEMTDIYVFLMKSLGLKYYPD 732 (734)
Q Consensus 706 ~~~~~~~~~~~~~~fl~~~l~~~~~~~ 732 (734)
.+....+.+|+...+.....|.
T Consensus 307 -----~~~~~~l~~f~~~~~~~~~lP~ 328 (367)
T PF10142_consen 307 -----SDVVQSLRAFYNRIQNGRPLPQ 328 (367)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCCe
Confidence 2344557899998887766663
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0029 Score=64.17 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=100.2
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC-cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK-DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~-~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..+++++||+.||- |..+..++||+...-. .+.+......+..+.||||||.|+++..+
T Consensus 148 k~vaf~~~gs~lat-----gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--------------- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT-----GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--------------- 207 (398)
T ss_pred eEEEEcCCCCEeee-----ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---------------
Confidence 46899999999994 4455789999954443 23333333344689999999999999854
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCC--cEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG--RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
...+|+..++..-..+ +..+.+..+....|+-|+ ..+.+....... ..|..+++..-.... -.++.+.+.
T Consensus 208 --~~~VW~~~~g~~~a~~--t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~-~~v~~~~~~~w~~~~---~l~~~~~~~ 279 (398)
T KOG0771|consen 208 --SARVWSVNTGAALARK--TPFSKDEMFSSCRFSVDNAQETLRLAASQFPG-GGVRLCDISLWSGSN---FLRLRKKIK 279 (398)
T ss_pred --ceEEEEeccCchhhhc--CCcccchhhhhceecccCCCceEEEEEecCCC-CceeEEEeeeecccc---ccchhhhhh
Confidence 2445555554211101 001112234566777776 222222222111 233333333200000 122333344
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEE
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHY 370 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 370 (734)
..+..... +|.||+.+++-++. +.+..++..+-+ ...++++.....+..+.+..+.+.....
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~d----GsVai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMD----GSVAIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccC----CcEEEEEeceee---eeEeehhhheeeeeeEEEcCCcCccccc
Confidence 34333333 89999988877763 347777765543 2345555444455555554434444443
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0095 Score=60.22 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=81.2
Q ss_pred cCCCCeeEEEEEeCC---CCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC--------C
Q psy4818 109 KGLQNHSILYVQRNL---TGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD--------T 177 (734)
Q Consensus 109 ~~~~~~~~l~~~~~~---~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~--------~ 177 (734)
.+++.+-.+|..... ++...+.+ ...|+ .+...+..+.|||+|..||= |.+...+.+|-.. +
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y-~s~Ls-~H~~aVN~vRf~p~gelLAS-----g~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEY-LSSLS-RHTRAVNVVRFSPDGELLAS-----GGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEE-eeccc-CCcceeEEEEEcCCcCeeee-----cCCCceEEEEEecCcCCccccc
Confidence 345566677775432 22222222 22332 34567889999999999993 3333456666543 2
Q ss_pred -----CC-c-cccc--ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCC
Q psy4818 178 -----GK-D-YPEV--LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG 248 (734)
Q Consensus 178 -----g~-~-~~~~--~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~ 248 (734)
.+ . +... ........++|+||+..+.+.+.+. .++.+++..++.. .+ ..++
T Consensus 105 e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn----------------s~~l~Dv~~G~l~--~~--~~dh 164 (434)
T KOG1009|consen 105 EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN----------------SVRLWDVHAGQLL--AI--LDDH 164 (434)
T ss_pred hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc----------------eEEEEEeccceeE--ee--cccc
Confidence 11 0 0001 1112346789999999998888654 6888888877532 22 2344
Q ss_pred CeeEEEEEEecCCcEEEEEEe
Q psy4818 249 RSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 249 ~~~~~~~~~SpDG~~l~~~~~ 269 (734)
..+..+++|.|-+++++-.+.
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred ccccceeecchhhhhhhhhcc
Confidence 557788999999999885543
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=58.68 Aligned_cols=140 Identities=14% Similarity=0.058 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc--cc--ccccCCCC
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY--YS--ESEFGSPN 625 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~--~~--~~~~g~~~ 625 (734)
...++-++-++++. .|+ .++|+|-|.|||.+-+++.++- +++++ ..|.+-..+.+..-++. .| -.+|-.
T Consensus 43 ~~a~~ele~~i~~~-~~~-~p~ivGssLGGY~At~l~~~~G--irav~-~NPav~P~e~l~gylg~~en~ytg~~y~l-- 115 (191)
T COG3150 43 QQALKELEKAVQEL-GDE-SPLIVGSSLGGYYATWLGFLCG--IRAVV-FNPAVRPYELLTGYLGRPENPYTGQEYVL-- 115 (191)
T ss_pred HHHHHHHHHHHHHc-CCC-CceEEeecchHHHHHHHHHHhC--Chhhh-cCCCcCchhhhhhhcCCCCCCCCcceEEe--
Confidence 34455555555542 333 3899999999999999998863 44544 44433222211111111 00 011100
Q ss_pred CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCC-CCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCC
Q psy4818 626 NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH-DDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 626 ~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~-D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~ 704 (734)
.+.....+.. .+++. .+.|..|++.... |.+..+.++... ++.. ..++..|+.|.|.
T Consensus 116 e~~hI~~l~~----~~~~~----l~~p~~~~lL~qtgDEvLDyr~a~a~---y~~~-----------~~~V~dgg~H~F~ 173 (191)
T COG3150 116 ESRHIATLCV----LQFRE----LNRPRCLVLLSQTGDEVLDYRQAVAY---YHPC-----------YEIVWDGGDHKFK 173 (191)
T ss_pred ehhhHHHHHH----hhccc----cCCCcEEEeecccccHHHHHHHHHHH---hhhh-----------hheeecCCCcccc
Confidence 1111222211 12222 3344455555544 876666554433 3333 4567789999997
Q ss_pred CchHHhHHHHHHHHHHHH
Q psy4818 705 TPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 705 ~~~~~~~~~~~~~~~fl~ 722 (734)
.-. ....++.+|+.
T Consensus 174 ~f~----~~l~~i~aF~g 187 (191)
T COG3150 174 GFS----RHLQRIKAFKG 187 (191)
T ss_pred chH----HhHHHHHHHhc
Confidence 532 34556777753
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.005 Score=60.35 Aligned_cols=200 Identities=14% Similarity=0.088 Sum_probs=98.6
Q ss_pred EEEEEECCCCCccc--------ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECC-CCCCCC
Q psy4818 169 TLHIKDVDTGKDYP--------EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLG-TEQDKD 239 (734)
Q Consensus 169 ~l~v~dl~~g~~~~--------~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-t~~~~~ 239 (734)
-|++||.-+|+..- +.... ..++.|||||..|+-.-. ..|.+.++. .+...+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~ta--AhsL~Fs~DGeqlfaGyk-----------------rcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTA--AHSLQFSPDGEQLFAGYK-----------------RCIRVFDTSRPGRDCP 194 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhh--heeEEecCCCCeEeeccc-----------------ceEEEeeccCCCCCCc
Confidence 46777777776321 11121 257899999999875432 134444442 111111
Q ss_pred -e-eEEec-CCCCeeEEEEEEecCCc-EEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE-E-EEEec
Q psy4818 240 -I-PVVEF-PNGRSLGLHSEVTDCGR-YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH-E-IIANN 313 (734)
Q Consensus 240 -~-~v~~~-~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~-~-~~s~d 313 (734)
. .++.. ....+.+..+++||-.. .+++-+.. ....||..+-. .++..+ .+...+. . .|-+|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~--q~~giy~~~~~----------~pl~ll-ggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG--QRVGIYNDDGR----------RPLQLL-GGHGGGVTHLQWCED 261 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeeccc--ceeeeEecCCC----------Cceeee-cccCCCeeeEEeccC
Confidence 1 11111 11133566788999554 55543321 12345544322 233333 3444443 3 39999
Q ss_pred CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEE--EEeeCCEEEEEEEeCCceeEEEEECCC-Cceee
Q psy4818 314 GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV--AAVANNKLIVHYIQNVRSVMDLHDLNT-GKRLH 390 (734)
Q Consensus 314 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~l~~~dl~~-g~~~~ 390 (734)
|.+|+.-+.. .-+|..||+..... .+-.|-.+.. ...+-+ .+...+.++++...+ ..|.+||+++ |.+..
T Consensus 262 Gn~lfsGaRk---~dkIl~WDiR~~~~-pv~~L~rhv~-~TNQRI~FDld~~~~~LasG~td--G~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 262 GNKLFSGARK---DDKILCWDIRYSRD-PVYALERHVG-DTNQRILFDLDPKGEILASGDTD--GSVRVWDLKDLGNEVS 334 (406)
T ss_pred cCeecccccC---CCeEEEEeehhccc-hhhhhhhhcc-CccceEEEecCCCCceeeccCCC--ccEEEEecCCCCCccc
Confidence 9988753332 34699999865321 0111211211 111112 222235566555444 4788999976 66433
Q ss_pred eeCCCCceEEeeccCcc
Q psy4818 391 SFPLDLGQITHISGRRK 407 (734)
Q Consensus 391 ~l~~~~g~v~~~~~~~d 407 (734)
.+....-.+.+++.+|-
T Consensus 335 v~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ccccccccccceecCcc
Confidence 33222444567777765
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.026 Score=62.77 Aligned_cols=217 Identities=13% Similarity=0.179 Sum_probs=119.6
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccccc-CeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKF-PSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~-~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+.++.|.|++-..+ +|.+.+.|.||+.++.+++-...+..++ ....|.+.=-+|+-.++|
T Consensus 51 dGpVRgv~FH~~qplFV-----SGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDD----------- 114 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPLFV-----SGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDD----------- 114 (1202)
T ss_pred CCccceeeecCCCCeEE-----ecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCC-----------
Confidence 35688999999998644 4567799999999988765333333321 344555555566655543
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC------
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK------ 293 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~------ 293 (734)
+.|.+|+.-+.. -+.+.+ .+..+++...|.|....|+ ++ +-...|.+||+.+.......+.
T Consensus 115 -----QTIrIWNwqsr~--~iavlt--GHnHYVMcAqFhptEDlIV-Sa---SLDQTVRVWDisGLRkk~~~pg~~e~~~ 181 (1202)
T KOG0292|consen 115 -----QTIRIWNWQSRK--CIAVLT--GHNHYVMCAQFHPTEDLIV-SA---SLDQTVRVWDISGLRKKNKAPGSLEDQM 181 (1202)
T ss_pred -----CeEEEEeccCCc--eEEEEe--cCceEEEeeccCCccceEE-Ee---cccceEEEEeecchhccCCCCCCchhhh
Confidence 367888876653 223333 4566888999999777765 22 2226789999876433322211
Q ss_pred ------C------C--ceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEE
Q psy4818 294 ------F------P--LKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVA 359 (734)
Q Consensus 294 ------~------~--~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~ 359 (734)
. + +..+..+.+.+....+-.+..=++++..+...-+|++++- +.. |..=+.-+....+..+.
T Consensus 182 ~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKa---WEvDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 182 RGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKA---WEVDTCRGHYNNVSSVL 257 (1202)
T ss_pred hccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc-ccc---eeehhhhcccCCcceEE
Confidence 0 0 0011222222222111122222333433333456777764 333 65433333344555665
Q ss_pred EeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 360 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
+.....++++..++ ..+.+||+...+.++.+
T Consensus 258 fhp~q~lIlSnsED--ksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 258 FHPHQDLILSNSED--KSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ecCccceeEecCCC--ccEEEEecccccceeee
Confidence 55435677777776 46888888544434443
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=71.27 Aligned_cols=125 Identities=7% Similarity=0.065 Sum_probs=80.6
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+.+-+...+.||+|+.||-+...+-.+...|++|+.++=..... ......+..++|||||++|+-++.|.
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR--------- 594 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR--------- 594 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc---------
Confidence 45778999999999999987766666778899999876443331 22222346789999999999887543
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.+-++............-..+.+...+.+..|+||+++++ +.+++ ..+.+|....
T Consensus 595 -------t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~Fa-TaSRD---K~VkVW~~~~ 649 (764)
T KOG1063|consen 595 -------TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFA-TASRD---KKVKVWEEPD 649 (764)
T ss_pred -------eEEeeeeecccchhhhhccccccceEEEEcccCcccceeE-EecCC---ceEEEEeccC
Confidence 2333333222111000001334556778899999999943 44442 5677776655
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.013 Score=64.18 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=84.4
Q ss_pred EEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcE
Q psy4818 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQK 226 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 226 (734)
.=++|||+.|.-. ......+.++|.++-+......-+.+.....++|||+++|.+..+.+. ...
T Consensus 198 ~PlpnDGk~l~~~----~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~------------G~t 261 (635)
T PRK02888 198 IPLPNDGKDLDDP----KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE------------GVT 261 (635)
T ss_pred cccCCCCCEeecc----cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc------------Ccc
Confidence 4578999976321 234467889999987653322222234578999999999888764321 123
Q ss_pred EEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-ccccc
Q psy4818 227 IYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI-PGMDH 305 (734)
Q Consensus 227 l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~-~~~~~ 305 (734)
+..++.++. ....+|.... .-.+.+||++..+. .+.|-++|..+.... .......+ .+...
T Consensus 262 l~em~a~e~--d~~vvfni~~------iea~vkdGK~~~V~------gn~V~VID~~t~~~~----~~~v~~yIPVGKsP 323 (635)
T PRK02888 262 LAEMMAAER--DWVVVFNIAR------IEEAVKAGKFKTIG------GSKVPVVDGRKAANA----GSALTRYVPVPKNP 323 (635)
T ss_pred eeeeccccC--ceEEEEchHH------HHHhhhCCCEEEEC------CCEEEEEECCccccC----CcceEEEEECCCCc
Confidence 443333221 1222332211 12567899987751 267889997761000 01122222 22222
Q ss_pred eEEEEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 306 HHEIIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 306 ~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
.--.+||||+++|... .. ...+-++|+++
T Consensus 324 HGV~vSPDGkylyVan-kl--S~tVSVIDv~k 352 (635)
T PRK02888 324 HGVNTSPDGKYFIANG-KL--SPTVTVIDVRK 352 (635)
T ss_pred cceEECCCCCEEEEeC-CC--CCcEEEEEChh
Confidence 2123899999888643 32 23477788865
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00039 Score=55.16 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=51.2
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCc
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNC 548 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~ 548 (734)
|.+|....+.|++ .+..+|+++||....+. .|. .+++.|+++||.|+..|.||.|... +. ......
T Consensus 1 G~~L~~~~w~p~~----~~k~~v~i~HG~~eh~~--ry~-~~a~~L~~~G~~V~~~D~rGhG~S~------g~-rg~~~~ 66 (79)
T PF12146_consen 1 GTKLFYRRWKPEN----PPKAVVVIVHGFGEHSG--RYA-HLAEFLAEQGYAVFAYDHRGHGRSE------GK-RGHIDS 66 (79)
T ss_pred CcEEEEEEecCCC----CCCEEEEEeCCcHHHHH--HHH-HHHHHHHhCCCEEEEECCCcCCCCC------Cc-ccccCC
Confidence 5677888888765 26889999999643322 333 3567788899999999999977543 11 112345
Q ss_pred hhHHHHHHHHH
Q psy4818 549 FDDFQAAAEYM 559 (734)
Q Consensus 549 ~~D~~~~~~~l 559 (734)
+++++.-+..+
T Consensus 67 ~~~~v~D~~~~ 77 (79)
T PF12146_consen 67 FDDYVDDLHQF 77 (79)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0055 Score=69.28 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=70.5
Q ss_pred cEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEE-EEEecCCCCCCCCcccccCCcEEEEEE
Q psy4818 154 KHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFY-NQYCDINGTADGTETTAHMGQKIYYHV 231 (734)
Q Consensus 154 ~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (734)
.+|||..+..| .|.+.|..++..... ........+|.|||||+.|+| ++... ..+...||+.+
T Consensus 319 tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~-----------~~g~s~vYv~~ 383 (912)
T TIGR02171 319 AKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG-----------LPGKSSVYVRN 383 (912)
T ss_pred eeEEEEEcCCC----eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC-----------CCCCceEEEEe
Confidence 46999988654 799999988775443 333334468999999999999 55422 12345799999
Q ss_pred CCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCC--------ceEEEEeCCCCC
Q psy4818 232 LGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQG--------SDLHYFDLHSLP 286 (734)
Q Consensus 232 l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~--------~~i~~~d~~~~~ 286 (734)
|.+....-+.+--+. . -+..-...+.|...++.+++...+ ..-|.+..+.|+
T Consensus 384 L~t~~~~~vkl~ve~--a-aiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk 443 (912)
T TIGR02171 384 LNASGSGLVKLPVEN--A-AIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK 443 (912)
T ss_pred hhccCCCceEeeccc--c-cccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC
Confidence 998765433322111 1 111234567776555444332221 356777777643
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG4840|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0051 Score=57.20 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=75.2
Q ss_pred cEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCC-CCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 489 PVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGG-ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 489 P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~-~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
-.|||+ ||-+.... --|.......|.+.+|.++.+..|-+- |||.. .-..+.+|+..++++++..++..
T Consensus 37 ~~vvfi-GGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~fSt 107 (299)
T KOG4840|consen 37 VKVVFI-GGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGFST 107 (299)
T ss_pred EEEEEE-cccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCccc
Confidence 345555 55454432 123333456677889999999998754 36621 22356789999999988766543
Q ss_pred CCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcchhc
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGALDML 606 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~d~~ 606 (734)
.|+++|||-|.-=.+..+++. |....|+|+++|+.|-.
T Consensus 108 --~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 108 --DVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred --ceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 799999999999888888532 44678999999998864
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0055 Score=63.36 Aligned_cols=228 Identities=13% Similarity=0.121 Sum_probs=126.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc-cccc----ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD-YPEV----LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~-~~~~----~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+....++|||+.|.. |.+..+|-|||+++-.. +... ...+ ..++-|||.| ++|....+
T Consensus 468 iRSckL~pdgrtLiv-----GGeastlsiWDLAapTprikaeltssapaC--yALa~spDak-vcFsccsd--------- 530 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAELTSSAPAC--YALAISPDAK-VCFSCCSD--------- 530 (705)
T ss_pred eeeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhhcCCcchhh--hhhhcCCccc-eeeeeccC---------
Confidence 788999999999884 55678999999987543 2211 1223 5788899997 56655422
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
..|.+|+|... ++|.+...+..-...+..|+||..|. .++-.+.|..||+.++. ++ .
T Consensus 531 ------GnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklW----TGGlDntvRcWDlregr--ql------q- 587 (705)
T KOG0639|consen 531 ------GNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLW----TGGLDNTVRCWDLREGR--QL------Q- 587 (705)
T ss_pred ------CcEEEEEcccc----eeeecccCCCCCceeEEecCCCceee----cCCCccceeehhhhhhh--hh------h-
Confidence 15778888643 24444443443445788999999987 33334789999998732 11 1
Q ss_pred eeccccc-eEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 299 VIPGMDH-HHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 299 l~~~~~~-~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
..++.. .+.. ..|.++++++--. +..+.+....+++ +-.+...+..++ ++.+..-++.+++...+.
T Consensus 588 -qhdF~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp~----kyqlhlheScVL-SlKFa~cGkwfvStGkDn-- 655 (705)
T KOG0639|consen 588 -QHDFSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKPE----KYQLHLHESCVL-SLKFAYCGKWFVSTGKDN-- 655 (705)
T ss_pred -hhhhhhhheecccCCCccceeeecc----cCcEEEEecCCcc----ceeecccccEEE-EEEecccCceeeecCchh--
Confidence 011111 1222 5688998886433 3346676665554 222333323444 343333255566655543
Q ss_pred eEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEE
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYH 426 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~ 426 (734)
-|-.|...-|..+-+... ...|.+-..+.|+ +++++.|+.. -..+|.
T Consensus 656 lLnawrtPyGasiFqskE-~SsVlsCDIS~dd-kyIVTGSGdk-kATVYe 702 (705)
T KOG0639|consen 656 LLNAWRTPYGASIFQSKE-SSSVLSCDISFDD-KYIVTGSGDK-KATVYE 702 (705)
T ss_pred hhhhccCccccceeeccc-cCcceeeeeccCc-eEEEecCCCc-ceEEEE
Confidence 344454444654333321 2334333444443 4555554432 344554
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0039 Score=68.65 Aligned_cols=197 Identities=10% Similarity=0.120 Sum_probs=108.6
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEE-EEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYN-QYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~-~~~~~~~~~~~~~~~~ 221 (734)
.|-.++||-++-.|-=+.| .++++|++...+.|..-..+--+..++|.|-.+..|.. +.|.
T Consensus 371 DILDlSWSKn~fLLSSSMD------KTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~------------ 432 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMD------KTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDG------------ 432 (712)
T ss_pred hheecccccCCeeEecccc------ccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccccc------------
Confidence 3557889988865553333 57999999988887644444444788999955554444 3332
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc-----
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL----- 296 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~----- 296 (734)
++.+|.|-..+ |....+-...+..++++|||++.++-... ..+++++..+.. +.....+
T Consensus 433 ----KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~----G~C~fY~t~~lk---~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 433 ----KVRLWSISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFN----GYCRFYDTEGLK---LVSDFHIRLHNK 496 (712)
T ss_pred ----ceEEeecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEec----cEEEEEEccCCe---EEEeeeEeeccC
Confidence 68888875432 22333334577899999999998875433 355666655411 1000000
Q ss_pred eeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC--CCceeEEEEEeeCCEEEEEEEeCC
Q psy4818 297 KTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED--ENRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 297 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
++....+-.+..++.-+.+.+++.+|. .+|-.+|+...+ +...+.+. ....+...+..++++|+ ...++
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnD----SrIRI~d~~~~~---lv~KfKG~~n~~SQ~~Asfs~Dgk~IV-s~seD- 567 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSND----SRIRIYDGRDKD---LVHKFKGFRNTSSQISASFSSDGKHIV-SASED- 567 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCC----CceEEEeccchh---hhhhhcccccCCcceeeeEccCCCEEE-EeecC-
Confidence 000011111223333344568887775 468888874432 12222221 11223333334545555 44455
Q ss_pred ceeEEEEEC
Q psy4818 375 RSVMDLHDL 383 (734)
Q Consensus 375 ~~~l~~~dl 383 (734)
..+|+|+.
T Consensus 568 -s~VYiW~~ 575 (712)
T KOG0283|consen 568 -SWVYIWKN 575 (712)
T ss_pred -ceEEEEeC
Confidence 68999987
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.027 Score=59.32 Aligned_cols=267 Identities=13% Similarity=0.101 Sum_probs=128.7
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc--cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE--VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~--~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
.+.-..+.|||-|.||+- ....| |-+| +|+.... ........-+.+||..++|+--+..... -.
T Consensus 210 nWTetyv~wSP~GTYL~t-~Hk~G-----I~lW---GG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~-----~~ 275 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVT-FHKQG-----IALW---GGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPII-----VE 275 (698)
T ss_pred cceeeeEEecCCceEEEE-Eeccc-----eeee---cCccHHHHHhccCCCceeeecCCccceEEEecCCccc-----cC
Confidence 456677999999999873 22232 3333 4442110 1111122467899999988755432211 11
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCe-eEEEEEEecCCcEEEEEEecCCC---CceEEEEeCCCCCCCccc---
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRS-LGLHSEVTDCGRYLLVSTSNNTQ---GSDLHYFDLHSLPDGKIS--- 291 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~-~~~~~~~SpDG~~l~~~~~~~~~---~~~i~~~d~~~~~~~~l~--- 291 (734)
.+....+++.+|++.|+.... -|...+.+. ...-+.||-|+||+|-....+-. ....+++|..+.....+.
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkr--sF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKR--SFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred cccCCCceEEEEEccccchhc--ceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcc
Confidence 123456789999999876432 122111110 11235677777777643321100 011233332221111100
Q ss_pred ---------------CCCCcee-e--------e--cc-cc--ceEEEEEecCCeEEEEeCCCCC--------CceEEEEe
Q psy4818 292 ---------------GKFPLKT-V--------I--PG-MD--HHHEIIANNGPELIVKTTKNAP--------KGKVVTIN 334 (734)
Q Consensus 292 ---------------~~~~~~~-l--------~--~~-~~--~~~~~~s~dg~~l~~~s~~~~~--------~~~l~~~d 334 (734)
...+.+. | + .. ++ ..-..|...|++|.|-.++... +..|++++
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 0000000 0 0 00 00 0111388899999988776311 33455555
Q ss_pred cCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECC-CCceeeee-CCCCceEEeeccCcccceEE
Q psy4818 335 LNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLN-TGKRLHSF-PLDLGQITHISGRRKYNEVF 412 (734)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~-~g~~~~~l-~~~~g~v~~~~~~~d~~~l~ 412 (734)
-+.-. ...++-. ..++...+-+.++++.+.........+..|-++ ++.....+ .++.-....+.++|.|.-++
T Consensus 434 eKdIp----ve~velk-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 434 EKDIP----VEVVELK-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVV 508 (698)
T ss_pred ccCCC----ceeeecc-hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEE
Confidence 33211 3333333 344544444556777666665555556665554 33322222 22323344677889997766
Q ss_pred EEEecCCCCceEEEEeC
Q psy4818 413 YGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 413 ~~~ss~~~P~~~~~~d~ 429 (734)
+..-.. .-+.++-||+
T Consensus 509 va~l~s-~~g~l~F~D~ 524 (698)
T KOG2314|consen 509 VAALVS-RRGDLEFYDT 524 (698)
T ss_pred EEEecc-cccceEEEec
Confidence 543221 4567888887
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.022 Score=62.00 Aligned_cols=204 Identities=11% Similarity=0.119 Sum_probs=120.5
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc--ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV--LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~--~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
...+..+.++||+++|..... + ..|.+|.+.+|+.+..- +........++.|-| .+.-+..
T Consensus 62 ~d~ita~~l~~d~~~L~~a~r-s----~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtgg----------- 124 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASR-S----QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGG----------- 124 (775)
T ss_pred hhhhheeeecCCccEEEEeec-c----ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEecc-----------
Confidence 344778999999988876653 2 57999999999865422 222223467888888 4443321
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
....+.+|++..+. .+....+.++.+..+.|.|+-.+.++.+ +.....+++||+.++.. + ...
T Consensus 125 ----aD~~v~VWdi~~~~----~th~fkG~gGvVssl~F~~~~~~~lL~s--g~~D~~v~vwnl~~~~t-c------l~~ 187 (775)
T KOG0319|consen 125 ----ADGRVKVWDIKNGY----CTHSFKGHGGVVSSLLFHPHWNRWLLAS--GATDGTVRVWNLNDKRT-C------LHT 187 (775)
T ss_pred ----ccceEEEEEeeCCE----EEEEecCCCceEEEEEeCCccchhheee--cCCCceEEEEEcccCch-H------HHH
Confidence 12268888887653 3444455677788889999876533332 23347899999987221 1 112
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC-----CEEEEEEEe
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN-----NKLIVHYIQ 372 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~~ 372 (734)
+..+....... +++|+..++.++.. .-+++||+..-+ ...++|. ...++++...++ +..+++.
T Consensus 188 ~~~H~S~vtsL~~~~d~~~~ls~~RD----kvi~vwd~~~~~---~l~~lp~--ye~~E~vv~l~~~~~~~~~~~~Ta-- 256 (775)
T KOG0319|consen 188 MILHKSAVTSLAFSEDSLELLSVGRD----KVIIVWDLVQYK---KLKTLPL--YESLESVVRLREELGGKGEYIITA-- 256 (775)
T ss_pred HHhhhhheeeeeeccCCceEEEeccC----cEEEEeehhhhh---hhheech--hhheeeEEEechhcCCcceEEEEe--
Confidence 22232333332 78888777655432 347888985432 1233333 344555544332 1244443
Q ss_pred CCceeEEEEECCCCcee
Q psy4818 373 NVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~ 389 (734)
++...+..||.++++..
T Consensus 257 G~~g~~~~~d~es~~~~ 273 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCV 273 (775)
T ss_pred cCCceEEEEecccchhh
Confidence 44568889999887753
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00024 Score=62.87 Aligned_cols=119 Identities=21% Similarity=0.326 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCccccc--ccCCC------
Q psy4818 553 QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSES--EFGSP------ 624 (734)
Q Consensus 553 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~--~~g~~------ 624 (734)
.+--+|++++ +-|.+..+.|.|+||+.++....++|++|..+|+.+|+.|...+... ++.. -|..|
T Consensus 88 ~AyerYv~eE--alpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~----yyddDv~ynsP~dylpg 161 (227)
T COG4947 88 RAYERYVIEE--ALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGG----YYDDDVYYNSPSDYLPG 161 (227)
T ss_pred HHHHHHHHHh--hcCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccc----cccCceeecChhhhccC
Confidence 3445577766 34567889999999999999999999999999999999988754321 1100 01111
Q ss_pred -CCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCC
Q psy4818 625 -NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702 (734)
Q Consensus 625 -~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~ 702 (734)
.++-..+.++ . + .+.+..|..|+..+ +..++.+.|..+ .+|..+.++.+-.|-
T Consensus 162 ~~dp~~l~rlr---------~----~---~~vfc~G~e~~~L~--~~~~L~~~l~dK-------qipaw~~~WggvaHd 215 (227)
T COG4947 162 LADPFRLERLR---------R----I---DMVFCIGDEDPFLD--NNQHLSRLLSDK-------QIPAWMHVWGGVAHD 215 (227)
T ss_pred CcChHHHHHHh---------h----c---cEEEEecCcccccc--chHHHHHHhccc-------cccHHHHHhcccccc
Confidence 1111111111 1 1 27788898887544 456777888776 778888777666664
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.029 Score=57.71 Aligned_cols=239 Identities=12% Similarity=0.125 Sum_probs=115.3
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
-.+-..++||||+|||+. .....|.|||..+.+.+....+.. .+.+++|=-.-..+|-.+.+.
T Consensus 203 keil~~avS~Dgkylatg-----g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr----------- 266 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATG-----GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR----------- 266 (479)
T ss_pred ceeEEEEEcCCCcEEEec-----CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC-----------
Confidence 345679999999999963 233678899999998766533222 235677743333444444332
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|.+|+++.-. -...+|..+ .-+.++.-..-++-+ ++.. ....+.+|++.. .. +.+.
T Consensus 267 -----svkvw~~~~~s-~vetlyGHq---d~v~~IdaL~reR~v--tVGg--rDrT~rlwKi~e-es---------qlif 323 (479)
T KOG0299|consen 267 -----SVKVWSIDQLS-YVETLYGHQ---DGVLGIDALSRERCV--TVGG--RDRTVRLWKIPE-ES---------QLIF 323 (479)
T ss_pred -----ceEEEehhHhH-HHHHHhCCc---cceeeechhcccceE--Eecc--ccceeEEEeccc-cc---------eeee
Confidence 45566654321 011223222 123334433344433 2221 123455566543 11 1112
Q ss_pred ccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCce----EeecCCC--C--ceeEEEEEeeCCEEEEEEE
Q psy4818 301 PGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK----TLIPEDE--N--RTLDVVAAVANNKLIVHYI 371 (734)
Q Consensus 301 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~----~l~~~~~--~--~~~~~~~~~~~~~l~~~~~ 371 (734)
.+...... .---+..+++. +..++.|++|++....+--.. .+.+..+ . ..+.++....+.-++.+.+
T Consensus 324 rg~~~sidcv~~In~~Hfvs----GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 324 RGGEGSIDCVAFINDEHFVS----GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eCCCCCeeeEEEecccceee----ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 22222222 11122344442 233567888888764421001 1111100 0 0223333334355666655
Q ss_pred eCCceeEEEEECCCCc-eeeeeC-CC-CceEEeeccCcccceEEEEEecCCCCceEE
Q psy4818 372 QNVRSVMDLHDLNTGK-RLHSFP-LD-LGQITHISGRRKYNEVFYGFTSFLQPGTIY 425 (734)
Q Consensus 372 ~~~~~~l~~~dl~~g~-~~~~l~-~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~ 425 (734)
-+| .|.+|-+++|- .+..|. .+ .|.|.++.++.+++.++....--..-++++
T Consensus 400 ~~G--~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 400 WSG--CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCC--ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 554 56677666662 122221 22 577888888888887776654444444444
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=59.56 Aligned_cols=217 Identities=11% Similarity=0.056 Sum_probs=120.9
Q ss_pred ceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 166 DWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 166 ~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
..++-.|||.-+|..+..-...--+-..+||.|.++|+-...+. -|.+.++.....+.. +.
T Consensus 79 adftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ek----------------llrvfdln~p~App~---E~ 139 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEK----------------LLRVFDLNRPKAPPK---EI 139 (334)
T ss_pred ccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHH----------------HhhhhhccCCCCCch---hh
Confidence 34677889988887553221111225788999998887655422 133334433322211 11
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNA 325 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~ 325 (734)
..+++-+..+-|--..+.|+= + .+...|.+||..++. ....|.-.......-+++||+.|.+.-
T Consensus 140 ~ghtg~Ir~v~wc~eD~~iLS---S-add~tVRLWD~rTgt--------~v~sL~~~s~VtSlEvs~dG~ilTia~---- 203 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHEDKCILS---S-ADDKTVRLWDHRTGT--------EVQSLEFNSPVTSLEVSQDGRILTIAY---- 203 (334)
T ss_pred cCCCCcceeEEEeccCceEEe---e-ccCCceEEEEeccCc--------EEEEEecCCCCcceeeccCCCEEEEec----
Confidence 123333445556555555541 1 344689999998842 233332222211122889988665421
Q ss_pred CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee-CCCCceEEeecc
Q psy4818 326 PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF-PLDLGQITHISG 404 (734)
Q Consensus 326 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l-~~~~g~v~~~~~ 404 (734)
...|..+|.++-. .|-.-.-...+.+..+..+..+++...++ ..+|.+|..+|+++... ....|-|.++.+
T Consensus 204 -gssV~Fwdaksf~-----~lKs~k~P~nV~SASL~P~k~~fVaGged--~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF 275 (334)
T KOG0278|consen 204 -GSSVKFWDAKSFG-----LLKSYKMPCNVESASLHPKKEFFVAGGED--FKVYKFDYNTGEEIGSYNKGHFGPVHCVRF 275 (334)
T ss_pred -CceeEEecccccc-----ceeeccCccccccccccCCCceEEecCcc--eEEEEEeccCCceeeecccCCCCceEEEEE
Confidence 1347778876532 12122223455666665556777776665 57889999999986664 444778888999
Q ss_pred CcccceEEEEEecCCCCceEEEEeC
Q psy4818 405 RRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 405 ~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+||| .++.+. ..-+.+.++-+
T Consensus 276 SPdG-E~yAsG---SEDGTirlWQt 296 (334)
T KOG0278|consen 276 SPDG-ELYASG---SEDGTIRLWQT 296 (334)
T ss_pred CCCC-ceeecc---CCCceEEEEEe
Confidence 9998 343333 33345666655
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.019 Score=60.13 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=75.1
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
...+..-+|||||.-|.-+ | |...|.+|.-.+--.-........+...+|.|++..|+|+..+
T Consensus 104 ~~A~~~gRW~~dGtgLlt~----G-EDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~------------ 166 (737)
T KOG1524|consen 104 AAAISSGRWSPDGAGLLTA----G-EDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG------------ 166 (737)
T ss_pred hhhhhhcccCCCCceeeee----c-CCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC------------
Confidence 3456678999999877632 2 4468999985432111111222334688999999999998742
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
++++..+.... .+.....+++.+..+.|++....|+ +++...+..+||.-+
T Consensus 167 -----h~~IKpL~~n~----k~i~WkAHDGiiL~~~W~~~s~lI~----sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 167 -----HISIKPLAANS----KIIRWRAHDGLVLSLSWSTQSNIIA----SGGEDFRFKIWDAQG 217 (737)
T ss_pred -----eEEEeeccccc----ceeEEeccCcEEEEeecCcccccee----ecCCceeEEeecccC
Confidence 56666665432 2444455677888999999998877 334446677888766
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.035 Score=51.61 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=40.5
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCce
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGK 329 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~ 329 (734)
-+..++..|.|+.|+ .+...+...++|+.++ ...+..-........+ |||-.. |+++. ..+.+
T Consensus 233 avaav~vdpsgrll~----sg~~dssc~lydirg~--------r~iq~f~phsadir~vrfsp~a~--yllt~--syd~~ 296 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLA----SGHADSSCMLYDIRGG--------RMIQRFHPHSADIRCVRFSPGAH--YLLTC--SYDMK 296 (350)
T ss_pred eeEEEEECCCcceee----eccCCCceEEEEeeCC--------ceeeeeCCCccceeEEEeCCCce--EEEEe--cccce
Confidence 456788999999887 2333467788899873 2222222222222233 887543 33332 12456
Q ss_pred EEEEecCC
Q psy4818 330 VVTINLNN 337 (734)
Q Consensus 330 l~~~d~~~ 337 (734)
|-+.|+.+
T Consensus 297 ikltdlqg 304 (350)
T KOG0641|consen 297 IKLTDLQG 304 (350)
T ss_pred EEEeeccc
Confidence 88888875
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.038 Score=57.58 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=73.6
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
.....|.|.| .||...- ...+.|+|.++...++....+...+...+||||..|+..+.+.
T Consensus 410 ~~~~~fhpsg-~va~Gt~-----~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~-------------- 469 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTA-----TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN-------------- 469 (626)
T ss_pred eeEeeccCcc-eEEEeec-----cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC--------------
Confidence 4567889999 7776543 2468899999977666555555567889999999999887654
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeC
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDL 282 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~ 282 (734)
.||++.+...... ...... ....++..+.||+|+++|.-. +...+|.+|..
T Consensus 470 --~iyiy~Vs~~g~~-y~r~~k-~~gs~ithLDwS~Ds~~~~~~----S~d~eiLyW~~ 520 (626)
T KOG2106|consen 470 --HIYIYRVSANGRK-YSRVGK-CSGSPITHLDWSSDSQFLVSN----SGDYEILYWKP 520 (626)
T ss_pred --eEEEEEECCCCcE-EEEeee-ecCceeEEeeecCCCceEEec----cCceEEEEEcc
Confidence 4666665543221 111111 112477889999999998722 23367888843
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.19 Score=55.09 Aligned_cols=255 Identities=14% Similarity=0.135 Sum_probs=143.2
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
++|+..+.|..+..+.++..|-+++..+|.+. -| .++ ....++.|.+||+.+.|...........++-..+.
T Consensus 137 s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~--~d--~i~----~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~g 208 (682)
T COG1770 137 SPDHNLLAYSVDVLGDEQYTLRFKDLATGEEL--PD--EIT----NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLG 208 (682)
T ss_pred CCCCceEEEEEecccccEEEEEEEeccccccc--ch--hhc----ccccceEEecCCCeEEEEEEcCCCCcceEEEEecC
Confidence 47788888888877788888888776554422 11 111 11467999999999999988766555677776665
Q ss_pred C--CCc--ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeE
Q psy4818 177 T--GKD--YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLG 252 (734)
Q Consensus 177 ~--g~~--~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~ 252 (734)
+ ... +-+......+-++.=|-+.++|+....+ ....++++.+.+.+..+-.++...+.+-.+.
T Consensus 209 t~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~-------------~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~ 275 (682)
T COG1770 209 TPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGS-------------HITSEVRLLDADDPEAEPKVVLPRENGVEYS 275 (682)
T ss_pred CCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCC-------------CcceeEEEEecCCCCCceEEEEEcCCCcEEe
Confidence 5 211 1111111111233334555566555432 2234788888776665555555544322222
Q ss_pred EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEE
Q psy4818 253 LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVV 331 (734)
Q Consensus 253 ~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~ 331 (734)
. ..-|.+.++.++.....-.|+...+.. ....|+.++.+...... .++--.++|++.-.. +...+|+
T Consensus 276 ~----eh~~d~f~i~sN~~gknf~l~~ap~~~-------~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~-~glp~v~ 343 (682)
T COG1770 276 V----EHGGDRFYILSNADGKNFKLVRAPVSA-------DKSNWRELIPHREDVRLEGVDLFADHLVLLERQ-EGLPRVV 343 (682)
T ss_pred e----eecCcEEEEEecCCCcceEEEEccCCC-------ChhcCeeeeccCCCceeeeeeeeccEEEEEecc-cCCceEE
Confidence 1 223666666666544335666666621 12457777766554433 366666777766554 4456788
Q ss_pred EEecCCCCCCCceEeecCCCCceeEEEE---EeeCCEEEEEEEeC-CceeEEEEECCCCce
Q psy4818 332 TINLNNPCEKNWKTLIPEDENRTLDVVA---AVANNKLIVHYIQN-VRSVMDLHDLNTGKR 388 (734)
Q Consensus 332 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~l~~~dl~~g~~ 388 (734)
+.+.++++. ..+.-.++... .+.. -.+.+.|-+.++.- ...+++-+|+.+++.
T Consensus 344 v~~~~~~~~---~~i~f~~~ay~-~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er 400 (682)
T COG1770 344 VRDRKTGEE---RGIAFDDEAYS-AGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGER 400 (682)
T ss_pred EEecCCCce---eeEEecchhhh-ccccCCCCCCCccEEEEeecccccceeEEeeccCCcE
Confidence 898876652 22222221111 1111 11224555555443 345899999998885
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00096 Score=72.68 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=78.1
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc----------------HHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS----------------ISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~----------------~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
+..+..+++..++ .....|+||+++||||.+...++. ..-..|. + -..++.+|.+-|.||
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~-~-~~~~l~iDqP~G~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWN-N-EAYVIYVDQPAGVGF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccc-c-ccCeEEEeCCCCcCc
Confidence 4567777776554 245689999999999987433110 0011233 2 356777786533334
Q ss_pred Cchhhhcccc-ccCCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcC----------CCceeEEEEcC
Q psy4818 533 GEDWHNAGRL-LKKQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQR----------PELYGAALILV 600 (734)
Q Consensus 533 g~~~~~~~~~-~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~----------p~~~~a~v~~~ 600 (734)
+.. ..... .......+|+...++.+.++ ......++.|+|+||||..+..++.+- +=.++++++..
T Consensus 136 S~~--~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 136 SYA--DKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred ccC--CCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 422 11110 11123456666666654433 334457899999999999887776431 11478999999
Q ss_pred Ccchhc
Q psy4818 601 GALDML 606 (734)
Q Consensus 601 ~~~d~~ 606 (734)
|++|..
T Consensus 214 g~~dp~ 219 (462)
T PTZ00472 214 GLTDPY 219 (462)
T ss_pred cccChh
Confidence 988764
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0081 Score=63.88 Aligned_cols=196 Identities=10% Similarity=0.125 Sum_probs=105.7
Q ss_pred CCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-----ccccccCeeEEEc-CCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 150 SDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-----LKNVKFPSISWTH-DHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 150 SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-----~~~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
--+.+++|.-....| ..|-|+++..--.+++. ..+..+..+.|.| |..+|+....+.
T Consensus 588 can~~rvAVPL~g~g---G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg-------------- 650 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSG---GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDG-------------- 650 (1012)
T ss_pred eeccceEEEEecCCC---ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCc--------------
Confidence 345677777665544 36788887642233332 3344457789998 778888877543
Q ss_pred CcEEEEEECCCCCCC---CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 224 GQKIYYHVLGTEQDK---DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.-+||++..+..... ...+... +..-+.++.|.|=-.-++.++ .....|.+||+.++. ..-.+.
T Consensus 651 ~i~lWr~~a~gl~e~~~tPe~~lt~--h~eKI~slRfHPLAadvLa~a---syd~Ti~lWDl~~~~--------~~~~l~ 717 (1012)
T KOG1445|consen 651 QINLWRLTANGLPENEMTPEKILTI--HGEKITSLRFHPLAADVLAVA---SYDSTIELWDLANAK--------LYSRLV 717 (1012)
T ss_pred eEEEEEeccCCCCcccCCcceeeec--ccceEEEEEecchhhhHhhhh---hccceeeeeehhhhh--------hhheec
Confidence 223444443322110 0011111 122456788888544333332 223689999998832 223455
Q ss_pred ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC--CceeEEEEEeeCCEEEEEEEeCC--c
Q psy4818 301 PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE--NRTLDVVAAVANNKLIVHYIQNV--R 375 (734)
Q Consensus 301 ~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~~--~ 375 (734)
.+.+..+.. |||||+.++-+.. +++|.++...+.+ +.+..... +..-.-+.|.-++++++...-+. .
T Consensus 718 gHtdqIf~~AWSpdGr~~AtVcK----Dg~~rVy~Prs~e----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~Se 789 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPDGRRIATVCK----DGTLRVYEPRSRE----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSE 789 (1012)
T ss_pred cCcCceeEEEECCCCcceeeeec----CceEEEeCCCCCC----CccccCCCCccCcceeEEEEecCcEEEEecccccch
Confidence 555666665 9999999886654 3568888877654 33333221 01111222333355555544332 2
Q ss_pred eeEEEEEC
Q psy4818 376 SVMDLHDL 383 (734)
Q Consensus 376 ~~l~~~dl 383 (734)
.+|.+||.
T Consensus 790 RQv~~Y~A 797 (1012)
T KOG1445|consen 790 RQVQMYDA 797 (1012)
T ss_pred hhhhhhhh
Confidence 36777764
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.05 Score=54.39 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=103.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++|.+ -.++|++-... -.|+++|-+...+... .....+...++|-|-+..-+.+....
T Consensus 99 ~dlr~~aWhq--H~~~fava~nd---dvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~----------- 162 (445)
T KOG2139|consen 99 IDLRGVAWHQ--HIIAFAVATND---DVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA----------- 162 (445)
T ss_pred cceeeEeech--hhhhhhhhccC---cEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-----------
Confidence 3477899998 44566553322 3678888666332211 11222346899999877655555422
Q ss_pred ccCCcEEEEEECCCC----------CCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcc
Q psy4818 221 AHMGQKIYYHVLGTE----------QDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~----------~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l 290 (734)
-|.+|..... ......++..+.+ ..+.+..|.+||..++-.+ -..+.|.+||.+++..
T Consensus 163 -----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS---~gsssi~iWdpdtg~~--- 230 (445)
T KOG2139|consen 163 -----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTAS---FGSSSIMIWDPDTGQK--- 230 (445)
T ss_pred -----eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecc---cCcceEEEEcCCCCCc---
Confidence 2333322210 1112235555544 3677899999999887322 2237899999998432
Q ss_pred cCCCCceeeeccccceEE--EEEecCCeEEEEeCCCCCCceEEEEe-cCCCCCCCceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 291 SGKFPLKTVIPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTIN-LNNPCEKNWKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
.++.....++.. -|||||++|+-.+-.. .++|+..+ .-+.+ .| ++.. ..+-..+..+.+..++
T Consensus 231 ------~pL~~~glgg~slLkwSPdgd~lfaAt~da--vfrlw~e~q~wt~e--rw--~lgs--grvqtacWspcGsfLL 296 (445)
T KOG2139|consen 231 ------IPLIPKGLGGFSLLKWSPDGDVLFAATCDA--VFRLWQENQSWTKE--RW--ILGS--GRVQTACWSPCGSFLL 296 (445)
T ss_pred ------ccccccCCCceeeEEEcCCCCEEEEecccc--eeeeehhcccceec--ce--eccC--CceeeeeecCCCCEEE
Confidence 122211223333 3999999887655432 34454211 11111 12 2222 2333344445555666
Q ss_pred EEEEeCCceeEEEEEC
Q psy4818 368 VHYIQNVRSVMDLHDL 383 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl 383 (734)
|+.. +.+.||....
T Consensus 297 f~~s--gsp~lysl~f 310 (445)
T KOG2139|consen 297 FACS--GSPRLYSLTF 310 (445)
T ss_pred EEEc--CCceEEEEee
Confidence 6553 4477877755
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.18 Score=49.58 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=47.8
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..++.+.|||.+..|+.++- .| .|.++|+.+...+..-......-..+|.+ ...++....+.
T Consensus 14 d~IS~v~f~~~~~~LLvssW-Dg----slrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg------------ 75 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSW-DG----SLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDG------------ 75 (323)
T ss_pred hceeeEEEcCcCCcEEEEec-cC----cEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCc------------
Confidence 45889999999999887763 33 58888887664332222222123456654 45666665433
Q ss_pred cCCcEEEEEECCCCCCC
Q psy4818 222 HMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~ 238 (734)
+|.++++.++...
T Consensus 76 ----~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 76 ----QVRRYDLNTGNED 88 (323)
T ss_pred ----eEEEEEecCCcce
Confidence 7899999887653
|
|
| >KOG4389|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00033 Score=72.51 Aligned_cols=127 Identities=25% Similarity=0.265 Sum_probs=79.9
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHH-HhcCeEEEEEecccCCCCCchhhhcccc-ccCCCch
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL-RHFNGIYAIPNIRGGGELGEDWHNAGRL-LKKQNCF 549 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l-~~~G~~v~~~~~rG~~~~g~~~~~~~~~-~~~~~~~ 549 (734)
+.+-++.|. .++ .+.-++|++|||...+.+++....-...| +....+|+.+|||-|. +|-=+- .+.. ..+--.+
T Consensus 121 LYlNVW~P~-~~p-~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~-FGFL~l-~~~~eaPGNmGl 196 (601)
T KOG4389|consen 121 LYLNVWAPA-ADP-YNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGA-FGFLYL-PGHPEAPGNMGL 196 (601)
T ss_pred eEEEEeccC-CCC-CCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeecc-ceEEec-CCCCCCCCccch
Confidence 455555663 122 22338999999865554444332222333 3346889999999754 552111 1111 1222346
Q ss_pred hHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEEEcCCcc
Q psy4818 550 DDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPE---LYGAALILVGAL 603 (734)
Q Consensus 550 ~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v~~~~~~ 603 (734)
-|..-|++|+.++- -.||+||.++|.|+|...+.+-+. .|. +|+-+|+++|-.
T Consensus 197 ~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLl-sP~S~glF~raIlQSGS~ 255 (601)
T KOG4389|consen 197 LDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLL-SPGSRGLFHRAILQSGSL 255 (601)
T ss_pred HHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheec-CCCchhhHHHHHhhcCCC
Confidence 78889999998762 269999999999999987766543 243 899999888754
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=66.97 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=60.9
Q ss_pred HHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc
Q psy4818 509 SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 509 ~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 588 (734)
.+..+|.++|..|++++.|+-. .+.+ ...+.....+++..|++.+.+. +-.++|-+.|++.||.+...+++.
T Consensus 130 s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHh
Confidence 4567888899999999977522 2211 1112222234555677777654 445689999999999999999988
Q ss_pred CCCc-eeEEEEcCCcchhc
Q psy4818 589 RPEL-YGAALILVGALDML 606 (734)
Q Consensus 589 ~p~~-~~a~v~~~~~~d~~ 606 (734)
.+.. .+.++...-.+|+.
T Consensus 202 ~~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 202 MAAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred hhhcccccceeeecchhhc
Confidence 8876 77776665555543
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.15 Score=58.22 Aligned_cols=252 Identities=13% Similarity=0.091 Sum_probs=135.4
Q ss_pred ccCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEe-----C----
Q psy4818 92 KYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLS-----K---- 162 (734)
Q Consensus 92 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~-----~---- 162 (734)
....++++|..+++..++++. ..++|+.+.. + .+.. ....+..+.|||+|+.+++... .
T Consensus 63 ~~~~~spdg~~~~~~~~~~~~-~~~l~l~~~~-g----~~~~------~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 63 SELRWSPDGSVLAFVSTDGGR-VAQLYLVDVG-G----LITK------TAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred cccccCCCCCEEEEEeccCCC-cceEEEEecC-C----ceee------eecccccceeCCCCCeEEEEecccccccCCce
Confidence 345557999999999865533 5677877654 3 1111 1244778999999999999311 1
Q ss_pred -------------CCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEE
Q psy4818 163 -------------SGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY 229 (734)
Q Consensus 163 -------------~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (734)
.|.+..+++++|.++ ........+..+..+.|.+|++.++........ .......+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 200 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDA---------DPWVTNLYV 200 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCceeEEeeecccc---------CCceEeeEE
Confidence 122456778888766 322333444444566777777777776654310 011122333
Q ss_pred EECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC----CceEEEEeCCCCCCCcccCCCCceeeecc-cc
Q psy4818 230 HVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ----GSDLHYFDLHSLPDGKISGKFPLKTVIPG-MD 304 (734)
Q Consensus 230 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~l~~~-~~ 304 (734)
....++ .+.... + .......+.+.+||+.+++....... ...+++++.+.+..... . ...+ ..
T Consensus 201 ~~~~~~---~~~~~~-~-~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------~-~~~~~~~ 268 (620)
T COG1506 201 LIEGNG---ELESLT-P-GEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGD------L-SSGDDTR 268 (620)
T ss_pred EecCCC---ceEEEc-C-CCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEecccccccee------e-ccCCccc
Confidence 322222 111111 2 22346678999999998887765432 15667766333111110 0 0000 00
Q ss_pred ceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC-ceeEEEEE
Q psy4818 305 HHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV-RSVMDLHD 382 (734)
Q Consensus 305 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~~d 382 (734)
.... ...-++..++|.+........++..+..+.. ..+.... ...+..+.. +++.+++...... .+++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~----~~~~~~~-~~~v~~f~~-~~~~~~~~~s~~~~p~~i~~~~ 342 (620)
T COG1506 269 GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGG----VEGLSGD-DGGVPGFDV-DGRKLALAYSSPTEPPEIYLYD 342 (620)
T ss_pred CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCc----eeeecCC-CceEEEEee-CCCEEEEEecCCCCccceEEEc
Confidence 0011 1224667788777764445556666654433 3333333 344455544 5577777776554 56899998
Q ss_pred C
Q psy4818 383 L 383 (734)
Q Consensus 383 l 383 (734)
.
T Consensus 343 ~ 343 (620)
T COG1506 343 R 343 (620)
T ss_pred C
Confidence 6
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.036 Score=57.87 Aligned_cols=256 Identities=11% Similarity=0.002 Sum_probs=133.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc-cccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~-~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
+.+...+|||.|++|++.-. ..|.+++-..+..+ +..-.. .....+||.+++|.--......+ ++.....
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~------~~V~~~~g~~~~~l~~~~~~~--V~~~~fSP~~kYL~tw~~~pi~~-pe~e~sp 103 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHA------AGVECWGGPSKAKLVRFRHPD--VKYLDFSPNEKYLVTWSREPIIE-PEIEISP 103 (561)
T ss_pred cchhheeecCcchheehhhc------cceEEccccchhheeeeecCC--ceecccCcccceeeeeccCCccC-hhhccCC
Confidence 45678999999999986432 23555554443322 222222 35678899999887655433211 1111111
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEe--cCCCC--eeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVE--FPNGR--SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~--~~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
...-.++++|++.++. +++. ....+ +|- -+.||-|.++++.... +.++++++.. .-. ..+.
T Consensus 104 ~~~~n~~~vwd~~sg~----iv~sf~~~~q~~~~Wp-~~k~s~~D~y~ARvv~-----~sl~i~e~t~-n~~----~~p~ 168 (561)
T COG5354 104 FTSKNNVFVWDIASGM----IVFSFNGISQPYLGWP-VLKFSIDDKYVARVVG-----SSLYIHEITD-NIE----EHPF 168 (561)
T ss_pred ccccCceeEEeccCce----eEeeccccCCcccccc-eeeeeecchhhhhhcc-----CeEEEEecCC-ccc----cCch
Confidence 2222378899988763 3333 22222 221 3689999999985532 5789998732 211 1222
Q ss_pred eeeeccccceEEE-EEecC--CeEEEEeCC-CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 297 KTVIPGMDHHHEI-IANNG--PELIVKTTK-NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~dg--~~l~~~s~~-~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
..+-. .....+ |+|-| +.|++.+-+ .+....+..+.+.....-..+.++.-. ...+-+- ..++.+++....
T Consensus 169 ~~lr~--~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~-~~qLkW~--~~g~~ll~l~~t 243 (561)
T COG5354 169 KNLRP--VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS-GVQLKWQ--VLGKYLLVLVMT 243 (561)
T ss_pred hhccc--cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec-ccEEEEe--cCCceEEEEEEE
Confidence 22211 111222 66653 445555433 333333444444322210112333222 2222222 223555554433
Q ss_pred C--------CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 N--------VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~--------~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ |.+.||++++ ++...+....-.+.|..++++|+++++.+.+ ...|..+-.+|+
T Consensus 244 ~~ksnKsyfgesnLyl~~~-~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~--g~~pa~~s~~~l 305 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRI-TERSIPVEKDLKDPVHDFTWEPLSSRFAVIS--GYMPASVSVFDL 305 (561)
T ss_pred eeecccceeccceEEEEee-cccccceeccccccceeeeecccCCceeEEe--cccccceeeccc
Confidence 2 3468999998 4544332222256688999999998887654 234777777777
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.021 Score=60.26 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=89.3
Q ss_pred eEEeCCCCcEEEEEEeC----CCC---ceEEEEEEECCCCCc-ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 146 LYAFSDNGKHFAYCLSK----SGS---DWNTLHIKDVDTGKD-YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~----~g~---~~~~l~v~dl~~g~~-~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
.+.|.+-|.-|...... +|. ....||++++++... ++.... ..+..+.|||+|+.++.+.--
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~-GPVhdv~W~~s~~EF~VvyGf--------- 291 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE-GPVHDVTWSPSGREFAVVYGF--------- 291 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC-CCceEEEECCCCCEEEEEEec---------
Confidence 47788888877665432 221 125899999984433 233322 223689999999988877532
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|..+-++++... .+|+.+..+. -.+.|||-|++|++..-. .-..++-+||+.+. .++ .
T Consensus 292 -----MPAkvtifnlr~~-----~v~df~egpR--N~~~fnp~g~ii~lAGFG-NL~G~mEvwDv~n~--K~i------~ 350 (566)
T KOG2315|consen 292 -----MPAKVTIFNLRGK-----PVFDFPEGPR--NTAFFNPHGNIILLAGFG-NLPGDMEVWDVPNR--KLI------A 350 (566)
T ss_pred -----ccceEEEEcCCCC-----EeEeCCCCCc--cceEECCCCCEEEEeecC-CCCCceEEEeccch--hhc------c
Confidence 2446777777654 4555544442 247899999999986543 22368888998871 111 1
Q ss_pred eeeccccceEEEEEecCCeEEEEeC
Q psy4818 298 TVIPGMDHHHEIIANNGPELIVKTT 322 (734)
Q Consensus 298 ~l~~~~~~~~~~~s~dg~~l~~~s~ 322 (734)
-+...+..+.-|+|||++|+-.+.
T Consensus 351 -~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 351 -KFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred -ccccCCceEEEEcCCCcEEEEEec
Confidence 111122233349999998886655
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0092 Score=59.78 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=86.7
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+++..++.+.|++ .-.+|+.+- ..+|.+||+++|........+..+..+..+|+.+.|+-...+.
T Consensus 258 GHt~~Vs~V~w~d--~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr--------- 322 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD--ATVIYSVSW----DHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR--------- 322 (423)
T ss_pred ccccceeeEEEcC--CCceEeecc----cceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC---------
Confidence 3456688999999 447787753 3789999999998765555555567889999888777766543
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.+.+|+..++... +..+....+..|+.++.|||-..+++++.+. .+.+.+||+.+
T Consensus 323 -------~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~---D~t~klWDvRS 377 (423)
T KOG0313|consen 323 -------HIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY---DNTVKLWDVRS 377 (423)
T ss_pred -------ceeecCCCCCCCc-eeEEeeecchhhhhheecCCCCceEEEEEec---CCeEEEEEecc
Confidence 5777777766443 2333333444588899999999999987653 36788999887
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.029 Score=57.90 Aligned_cols=217 Identities=12% Similarity=0.142 Sum_probs=112.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+..+.-||+|.+|+- |....+||+|.+++|+.+....... ...-+.||-||+.|+-.+.|.
T Consensus 84 v~al~s~n~G~~l~a-----g~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg------------- 145 (476)
T KOG0646|consen 84 VHALASSNLGYFLLA-----GTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG------------- 145 (476)
T ss_pred eeeeecCCCceEEEe-----ecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------
Confidence 567888999999884 3344579999999999654322111 235678999998776655433
Q ss_pred CCcEEEEEECCC-------CCCCCeeEEecCCCCeeEEEEEEecCC--cEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 223 MGQKIYYHVLGT-------EQDKDIPVVEFPNGRSLGLHSEVTDCG--RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 223 ~~~~l~~~~l~t-------~~~~~~~v~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|..|.+-. .....+.+|. ++..-+.++..++-| .+| |+++ ....+.+||+..|.
T Consensus 146 ---~V~vW~l~~lv~a~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl-~TaS---~D~t~k~wdlS~g~------- 209 (476)
T KOG0646|consen 146 ---AVLVWLLTDLVSADNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARL-YTAS---EDRTIKLWDLSLGV------- 209 (476)
T ss_pred ---cEEEEEEEeecccccCCCccceeeec--cCcceeEEEEecCCCccceE-EEec---CCceEEEEEeccce-------
Confidence 344443321 1111222332 222233444444443 222 2322 22578888988731
Q ss_pred CCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCC--C------------CCceEeecCCCCceeEEEE
Q psy4818 294 FPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPC--E------------KNWKTLIPEDENRTLDVVA 359 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~------------~~~~~l~~~~~~~~~~~~~ 359 (734)
-+..++-+.....-..+|-+..+|+-+ ++ ++|+..++.+.. . .+...++.+..+..+.-..
T Consensus 210 -LLlti~fp~si~av~lDpae~~~yiGt-~~---G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 210 -LLLTITFPSSIKAVALDPAERVVYIGT-EE---GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred -eeEEEecCCcceeEEEcccccEEEecC-Cc---ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 111122111111113677666666533 33 345554443211 0 1123333333223444444
Q ss_pred EeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEe
Q psy4818 360 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITH 401 (734)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~ 401 (734)
..-++.++++...+ ..+.+||+.+.+.++.+..-.|.|+.
T Consensus 285 is~DgtlLlSGd~d--g~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED--GKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred EecCccEEEeeCCC--CCEEEEecchHHHHHHHhhhccccce
Confidence 44447888888776 47889999766666666522344433
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.083 Score=56.92 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=45.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEe
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYC 208 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~ 208 (734)
..+..+++-|||..|..+.+ ..++++|+..|..++...+.- .+.-++||.||++++-.+.|
T Consensus 13 hci~d~afkPDGsqL~lAAg------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred cchheeEECCCCceEEEecC------CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCc
Confidence 35788999999999988763 469999999988655333222 23678999999988766543
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.032 Score=63.40 Aligned_cols=96 Identities=11% Similarity=0.184 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCCeeEEEEEeCCCCCeEEE-eCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC-CceEEEEEEECCCCC
Q psy4818 102 NYFYFHNKGLQNHSILYVQRNLTGSTEVF-LDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG-SDWNTLHIKDVDTGK 179 (734)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~l-~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g-~~~~~l~v~dl~~g~ 179 (734)
++.|.....+ .|.+.+..+...+++ +.-+ ..+..|.|||||++|||+++..+ .....||+.||.+..
T Consensus 320 kiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~-------~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 320 KLAFRNDVTG----NLAYIDYTKGASRAVEIEDT-------ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG 388 (912)
T ss_pred eEEEEEcCCC----eEEEEecCCCCceEEEecCC-------CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccC
Confidence 4555554322 466777666666655 4433 34778999999999999555444 123679999997643
Q ss_pred --cccccccccccCeeEEEcCCcE-EEEEEEe
Q psy4818 180 --DYPEVLKNVKFPSISWTHDHKG-FFYNQYC 208 (734)
Q Consensus 180 --~~~~~~~~~~~~~~~wSpDg~~-l~y~~~~ 208 (734)
.+....++..+.-..-...|.+ |.|++.-
T Consensus 389 ~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 389 SGLVKLPVENAAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred CCceEeecccccccceEecCCCCeEEEEEcCC
Confidence 3333344442222333566665 5677653
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0005 Score=71.14 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCCCCcEEEEecCCCCCcCCccccHHHHH-HHHh--cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHH
Q psy4818 484 RNRRNPVIIYGYGGYGVSVLPTFSISRCM-FLRH--FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560 (734)
Q Consensus 484 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~--~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 560 (734)
.+...|++|++||..+......|...+.. ++.+ .++.|+++|...+... .+..+.. .-...-..+...+..|.
T Consensus 67 fn~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~--n~~~vg~~la~~l~~L~ 142 (331)
T PF00151_consen 67 FNPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVA--NTRLVGRQLAKFLSFLI 142 (331)
T ss_dssp --TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhh--hHHHHHHHHHHHHHHHH
Confidence 35679999999998666634444444433 5554 5899999998753321 1222211 00011123334566776
Q ss_pred HcCCCCCCcEEEEEcChHHHHHHHHHhcCCC--ceeEEEEcCC
Q psy4818 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPE--LYGAALILVG 601 (734)
Q Consensus 561 ~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~--~~~a~v~~~~ 601 (734)
+...+++++|.|+|||.|+.+++.+..+... .+..++..-|
T Consensus 143 ~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 143 NNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred hhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 5555789999999999999999999877554 4455555444
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.29 Score=47.73 Aligned_cols=169 Identities=11% Similarity=0.027 Sum_probs=91.8
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcE--EEEEEEecCCCCCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG--FFYNQYCDINGTADGT 217 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~--l~y~~~~~~~~~~~~~ 217 (734)
+.+++....|=|=..=+..+ ++-..+|.|||+.|-+...+-.-...+.+-+|||=... |+-+..
T Consensus 100 Hky~iss~~WyP~DtGmFts----sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt---------- 165 (397)
T KOG4283|consen 100 HKYAISSAIWYPIDTGMFTS----SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT---------- 165 (397)
T ss_pred ceeeeeeeEEeeecCceeec----ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec----------
Confidence 35666666666644444332 33447899999988664332222223467788886542 333322
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc---C-C
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS---G-K 293 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~---~-~ 293 (734)
+..+|.+-++.++.-...+ ..+.+-+..+.|||...|++++.+. ...|.+||+.. ...++. . .
T Consensus 166 -----r~~~VrLCDi~SGs~sH~L----sGHr~~vlaV~Wsp~~e~vLatgsa---Dg~irlWDiRr-asgcf~~lD~hn 232 (397)
T KOG4283|consen 166 -----RDVQVRLCDIASGSFSHTL----SGHRDGVLAVEWSPSSEWVLATGSA---DGAIRLWDIRR-ASGCFRVLDQHN 232 (397)
T ss_pred -----CCCcEEEEeccCCcceeee----ccccCceEEEEeccCceeEEEecCC---CceEEEEEeec-ccceeEEeeccc
Confidence 2336777788776543322 2334456789999999999987643 25677777654 222221 0 0
Q ss_pred -CCceee---eccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 294 -FPLKTV---IPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 294 -~~~~~l---~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
...+.+ +........ .|+.||++++..+. ..++-.++..++.
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DDRIRVWNMESGR 279 (397)
T ss_pred CccCccccccccccceeeeeeecccchhhhhccC----ccceEEeecccCc
Confidence 011111 111111111 38888887775443 3456667765543
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0047 Score=61.15 Aligned_cols=150 Identities=22% Similarity=0.220 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC------CCceeEEEEcCCcchhccccccccCcccccccCC
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR------PELYGAALILVGALDMLRFNKFTIAYYSESEFGS 623 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~ 623 (734)
.-+..++.+|.++..+ +++-++||||||+.+..++..+ |.+=+.+....||-....... .....-...-|
T Consensus 87 ~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~-~~~~~~~~~~g- 162 (255)
T PF06028_consen 87 KWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND-DQNQNDLNKNG- 162 (255)
T ss_dssp HHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC--TTTT-CSTT--
T ss_pred HHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc-cchhhhhcccC-
Confidence 3455678888777444 5899999999999999998763 444455555555544332211 10000011124
Q ss_pred CC-CHHHHHHHHhC-CccCCCCCCCCCccCCcEEEEecC------CCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEE
Q psy4818 624 PN-NKTHFHNLLSY-SPLHNIKVPPNNTQYPATLVLTGD------HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695 (734)
Q Consensus 624 ~~-~~~~~~~~~~~-sp~~~~~~p~~~~~~P~~Li~~g~------~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 695 (734)
|. ..+.+..|.+. . .+++. ... +|-+.|. .|.+||...++.+..-++.. .....-.+
T Consensus 163 p~~~~~~y~~l~~~~~--~~~p~-----~i~-VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~-------~~~Y~e~~ 227 (255)
T PF06028_consen 163 PKSMTPMYQDLLKNRR--KNFPK-----NIQ-VLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNR-------AKSYQEKT 227 (255)
T ss_dssp BSS--HHHHHHHHTHG--GGSTT-----T-E-EEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTT-------SSEEEEEE
T ss_pred CcccCHHHHHHHHHHH--hhCCC-----CeE-EEEEecccCCCCCCCeEEeHHHHHHHHHHhhcc-------cCceEEEE
Confidence 43 23445555433 1 12221 122 8999998 89999998887777766655 45555555
Q ss_pred eCC--CCCCCCCchHHhHHHHHHHHHHH
Q psy4818 696 EQD--AGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 696 ~~~--~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
+.| +.|.-... + .+....+..||
T Consensus 228 v~G~~a~HS~Lhe-N--~~V~~~I~~FL 252 (255)
T PF06028_consen 228 VTGKDAQHSQLHE-N--PQVDKLIIQFL 252 (255)
T ss_dssp EESGGGSCCGGGC-C--HHHHHHHHHHH
T ss_pred EECCCCccccCCC-C--HHHHHHHHHHh
Confidence 554 67865543 2 24445566666
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=43.76 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=21.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEE
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHI 172 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v 172 (734)
...+.|||||++|+|++...+....+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 46899999999999999988333377875
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.012 Score=58.83 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=96.7
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc----cccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY----PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~----~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
++.||| +.+....+|+=...|+++-..+|... +.+.....+-.+.|||-.+.++++..-+
T Consensus 216 ~LdWSp----~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D------------ 279 (440)
T KOG0302|consen 216 GLDWSP----IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD------------ 279 (440)
T ss_pred eeeccc----ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC------------
Confidence 588999 22222234555568999998888742 2222222346799999999998876422
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
..|.+|++..++.+. .++.. .+..-+.-++|+.+-..|+ .+.+...+.+||+.... ...++-....
T Consensus 280 ---gsIrIWDiRs~~~~~-~~~~k-Ah~sDVNVISWnr~~~lLa----sG~DdGt~~iwDLR~~~-----~~~pVA~fk~ 345 (440)
T KOG0302|consen 280 ---GSIRIWDIRSGPKKA-AVSTK-AHNSDVNVISWNRREPLLA----SGGDDGTLSIWDLRQFK-----SGQPVATFKY 345 (440)
T ss_pred ---ceEEEEEecCCCccc-eeEee-ccCCceeeEEccCCcceee----ecCCCceEEEEEhhhcc-----CCCcceeEEe
Confidence 268888888775433 33332 2222344578988777555 23444688999997722 2233333333
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
+....... |+|.....+..+.. +.+|..||++-
T Consensus 346 Hk~pItsieW~p~e~s~iaasg~---D~QitiWDlsv 379 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDSVIAASGE---DNQITIWDLSV 379 (440)
T ss_pred ccCCeeEEEeccccCceEEeccC---CCcEEEEEeec
Confidence 44455555 99887766655433 44699999864
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.06 Score=58.77 Aligned_cols=241 Identities=12% Similarity=0.129 Sum_probs=127.1
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcC---Cc-EEEEEEEecCCCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHD---HK-GFFYNQYCDINGTAD 215 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpD---g~-~l~y~~~~~~~~~~~ 215 (734)
++-.+.+..+++|+.-+.++.. ...+.|||+..-+.+..........+....++ +| .++|++..
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~R-----Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~------- 258 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGR-----DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG------- 258 (775)
T ss_pred hhhheeeeeeccCCceEEEecc-----CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC-------
Confidence 3456789999999988876542 25799999965543321111111124444444 33 24444421
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
...+.+++..++.- +.....++.+..........+++.++++.. ..++++|.+++. .
T Consensus 259 --------~g~~~~~d~es~~~--~~~~~~~~~~e~~~~~~~~~~~~~l~vtae-----Qnl~l~d~~~l~--------i 315 (775)
T KOG0319|consen 259 --------SGVVQYWDSESGKC--VYKQRQSDSEEIDHLLAIESMSQLLLVTAE-----QNLFLYDEDELT--------I 315 (775)
T ss_pred --------CceEEEEecccchh--hhhhccCCchhhhcceeccccCceEEEEcc-----ceEEEEEccccE--------E
Confidence 12455555544321 111011111112223444556676665432 468888887721 1
Q ss_pred ceeeeccccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 296 LKTVIPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 296 ~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
...++...+.... ++.|+.+++++.+|.. ..++| ++.+.. ++ ++++..+.++ +......+.++++.+.|
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~--~lr~y--~~~~~~---c~-ii~GH~e~vl-SL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSP--ELRLY--TLPTSY---CQ-IIPGHTEAVL-SLDVWSSGDLLATGSKD 386 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCC--ceEEE--ecCCCc---eE-EEeCchhhee-eeeecccCcEEEEecCC
Confidence 1223332233333 4888889999988853 44555 777765 34 6666544444 33323325677777777
Q ss_pred CceeEEEEECCCCce----eeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKR----LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~----~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..-.|+++ +++.. ....+...+++..+..+..+..++++.|+.. .+-+|++
T Consensus 387 ~svilWr~--~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~---tlK~W~l 441 (775)
T KOG0319|consen 387 KSVILWRL--NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC---TLKLWDL 441 (775)
T ss_pred ceEEEEEe--cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc---eEEEecC
Confidence 54455555 33322 1223334555666666666666777766654 4566666
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0097 Score=59.27 Aligned_cols=158 Identities=9% Similarity=0.164 Sum_probs=97.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
-.+..+.++|-...|.-+... ...|.++|+.++.++...+-..+-..++|+| ..+-|+..++
T Consensus 188 Dti~svkfNpvETsILas~~s----DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP--eafnF~~a~E------------ 249 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCAS----DRSIVLYDLRQASPLKKVILTMRTNTICWNP--EAFNFVAANE------------ 249 (433)
T ss_pred CceeEEecCCCcchheeeecc----CCceEEEecccCCccceeeeeccccceecCc--cccceeeccc------------
Confidence 346678888888776654422 2469999999999877655555557899999 4566666433
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
...||.++..--. ..+.++. ++..-+.++.|||-|+-++ +++....|.++....+..+.+- -+.
T Consensus 250 --D~nlY~~DmR~l~-~p~~v~~--dhvsAV~dVdfsptG~Efv----sgsyDksIRIf~~~~~~SRdiY-------htk 313 (433)
T KOG0268|consen 250 --DHNLYTYDMRNLS-RPLNVHK--DHVSAVMDVDFSPTGQEFV----SGSYDKSIRIFPVNHGHSRDIY-------HTK 313 (433)
T ss_pred --cccceehhhhhhc-ccchhhc--ccceeEEEeccCCCcchhc----cccccceEEEeecCCCcchhhh-------hHh
Confidence 3468888765332 1222333 3344677899999999987 3344477888888774322211 112
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
.++....+ ||.|.+.++--++ ..+-+|+....
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSd--d~nvRlWka~A 346 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSD--DGNVRLWKAKA 346 (433)
T ss_pred hhheeeEEEEeccccEEEecCC--Ccceeeeecch
Confidence 23344455 9999875543232 33556766554
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0064 Score=62.93 Aligned_cols=188 Identities=11% Similarity=0.116 Sum_probs=105.8
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccc-cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVK-FPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~-~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..+++|||.+ ++|+.-.+|+ |.|||+.....+....+..+ .+.+..|+||..|+-...|.
T Consensus 513 yALa~spDak-vcFsccsdGn----I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn-------------- 573 (705)
T KOG0639|consen 513 YALAISPDAK-VCFSCCSDGN----IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-------------- 573 (705)
T ss_pred hhhhcCCccc-eeeeeccCCc----EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc--------------
Confidence 3578999998 7788776664 99999988765543332221 25788999999887655433
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
.|..|++.++.. +.-++. ..-++++..+|.|.|+++- -..+.+++..... +. ...+....
T Consensus 574 --tvRcWDlregrq--lqqhdF---~SQIfSLg~cP~~dWlavG----Mens~vevlh~sk-p~--------kyqlhlhe 633 (705)
T KOG0639|consen 574 --TVRCWDLREGRQ--LQQHDF---SSQIFSLGYCPTGDWLAVG----MENSNVEVLHTSK-PE--------KYQLHLHE 633 (705)
T ss_pred --ceeehhhhhhhh--hhhhhh---hhhheecccCCCccceeee----cccCcEEEEecCC-cc--------ceeecccc
Confidence 688888876532 111111 1234678899999999963 2336778877665 21 11121111
Q ss_pred cceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 304 DHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 304 ~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
.-.... |++-|++++-+... +. |-.|...-+. .++...+...+....+..+++++++.+.+-...+|-
T Consensus 634 ScVLSlKFa~cGkwfvStGkD---nl-LnawrtPyGa-----siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKD---NL-LNAWRTPYGA-----SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred cEEEEEEecccCceeeecCch---hh-hhhccCcccc-----ceeeccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 111223 78888876633222 11 3223222121 233333333444444444477777765554445553
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0069 Score=59.24 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=55.7
Q ss_pred CcEEEEecCCCCCcCC-ccccHHHH-HH-H--HhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc
Q psy4818 488 NPVIIYGYGGYGVSVL-PTFSISRC-MF-L--RHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~-~~~~~~~~-~~-l--~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 562 (734)
...|||+||..|+... .++..... .. . ....+.++..|+..- ...++-. .-....+-+..+++++.+.
T Consensus 4 g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~---~s~~~g~----~l~~q~~~~~~~i~~i~~~ 76 (225)
T PF07819_consen 4 GIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEE---LSAFHGR----TLQRQAEFLAEAIKYILEL 76 (225)
T ss_pred CCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCcc---ccccccc----cHHHHHHHHHHHHHHHHHh
Confidence 4568899996444221 11111110 00 0 112577888887651 1111110 0001123344566666554
Q ss_pred C---CCCCCcEEEEEcChHHHHHHHHHhcCC---CceeEEEE
Q psy4818 563 K---YTKPKYITIMGGSNGGLLVGACLNQRP---ELYGAALI 598 (734)
Q Consensus 563 ~---~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~~~a~v~ 598 (734)
. ...+++|.++||||||.++-.++...+ +..+.+|.
T Consensus 77 ~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iit 118 (225)
T PF07819_consen 77 YKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIIT 118 (225)
T ss_pred hhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEE
Confidence 3 467889999999999999988886543 34566654
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.09 Score=52.97 Aligned_cols=245 Identities=12% Similarity=0.068 Sum_probs=127.6
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEE-Ec-CCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISW-TH-DHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~w-Sp-Dg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
++++..+ +++|.-.+. ...+++||.++....+...........+| .+ +.+..+.++..+
T Consensus 108 VSsv~~~--~~~IltgsY-----Dg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D------------ 168 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSY-----DGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD------------ 168 (423)
T ss_pred hhhhccc--CceEEEeec-----CCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCC------------
Confidence 5556666 666664332 24789999887654443322222234555 22 233333333211
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc----------
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS---------- 291 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~---------- 291 (734)
..-.+|.++.+....+ .+..-..+...+..++..+||..++= +.-.+.|-+|+.++-....+.
T Consensus 169 -qtl~Lw~~~~~~~~~~--~~~~~~GHk~~V~sVsv~~sgtr~~S----gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 169 -QTLRLWKWNVGENKVK--ALKVCRGHKRSVDSVSVDSSGTRFCS----GSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred -ceEEEEEecCchhhhh--HHhHhcccccceeEEEecCCCCeEEe----ecccceeeecccCCCccccccccchhhhhhh
Confidence 1224555554433222 21111123335567888899988762 222356677763221111111
Q ss_pred -------CCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC
Q psy4818 292 -------GKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN 363 (734)
Q Consensus 292 -------~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 363 (734)
...|...+..+.+..-.+ |++ ...+|-.+ .++.|.+||+.++.. ...++... .+..+.....
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S----wDHTIk~WDletg~~--~~~~~~~k---sl~~i~~~~~ 311 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS----WDHTIKVWDLETGGL--KSTLTTNK---SLNCISYSPL 311 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CCceEeec----ccceEEEEEeecccc--eeeeecCc---ceeEeecccc
Confidence 011222232333333333 654 45555333 356799999988652 23444333 3333333333
Q ss_pred CEEEEEEEeCCceeEEEEECCCCc--e-eeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLNTGK--R-LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~~g~--~-~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..++++...+ ..+.+||+.++. . .+.+..+...|+++.++|.....+++.+-.. .+-.+|+
T Consensus 312 ~~Ll~~gssd--r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~---t~klWDv 375 (423)
T KOG0313|consen 312 SKLLASGSSD--RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDV 375 (423)
T ss_pred cceeeecCCC--CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC---eEEEEEe
Confidence 5677766555 578899997653 2 3455556667888889998877777765544 5667777
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.066 Score=51.06 Aligned_cols=239 Identities=11% Similarity=0.107 Sum_probs=130.1
Q ss_pred eEEeCC-CCcEEEEEEeC----CCCceEEEEEEECCCCCcccc-----cccccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 146 LYAFSD-NGKHFAYCLSK----SGSDWNTLHIKDVDTGKDYPE-----VLKNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 146 ~~~~SP-DG~~la~~~~~----~g~~~~~l~v~dl~~g~~~~~-----~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
++.||| -..+||.+... .|+ ..|++.++..++-+.+ +... ...++||+...-++++..-+
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~--G~L~ile~~~~~gi~e~~s~d~~D~--LfdV~Wse~~e~~~~~a~GD------ 82 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGN--GRLFILEVTDPKGIQECQSYDTEDG--LFDVAWSENHENQVIAASGD------ 82 (311)
T ss_pred eeEecccccchhheeehhhcccccC--ceEEEEecCCCCCeEEEEeeecccc--eeEeeecCCCcceEEEEecC------
Confidence 577888 23446655432 344 5799999875443332 1222 25789999988888887522
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
..|.++++..+. ..+.++.+. ..-+.++.|++-.+++++++ +.. ..|.+|+..-+ ..
T Consensus 83 ---------GSLrl~d~~~~s-~Pi~~~kEH--~~EV~Svdwn~~~r~~~lts-SWD--~TiKLW~~~r~--------~S 139 (311)
T KOG0277|consen 83 ---------GSLRLFDLTMPS-KPIHKFKEH--KREVYSVDWNTVRRRIFLTS-SWD--GTIKLWDPNRP--------NS 139 (311)
T ss_pred ---------ceEEEeccCCCC-cchhHHHhh--hhheEEeccccccceeEEee-ccC--CceEeecCCCC--------cc
Confidence 257777755433 344455543 22356789999888888776 322 45667765541 12
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee-CCEEEEEEEeC
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA-NNKLIVHYIQN 373 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 373 (734)
+........-.+.. |+|.-.-++..... +..+-.+|+..+.. ...++-...+. -...+.+ +..++++...+
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg---d~~l~lwdvr~~gk---~~~i~ah~~Ei-l~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASG---DGTLRLWDVRSPGK---FMSIEAHNSEI-LCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccC---CceEEEEEecCCCc---eeEEEecccee-EeecccccCCcEEEecCCC
Confidence 23333322333443 88865544433222 34466677765431 22233321222 2333332 25666666554
Q ss_pred CceeEEEEECCCCc-eeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGK-RLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~-~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..|+.||+..=+ .+-+|......|..+.+||....++.+.|-.- ++.++|.
T Consensus 213 --~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~ 264 (311)
T KOG0277|consen 213 --NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM---TVRIWDP 264 (311)
T ss_pred --ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc---eEEeccc
Confidence 578999985433 23344434455677788887766666554322 3445555
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.17 Score=51.30 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=78.4
Q ss_pred cEEEeeEEeCCCCcE-EEEEEeCCCCceEEEEEEECCCCCc-ccc-------cccccccCeeEEEcCCcEEEEEEEecCC
Q psy4818 141 TTALKLYAFSDNGKH-FAYCLSKSGSDWNTLHIKDVDTGKD-YPE-------VLKNVKFPSISWTHDHKGFFYNQYCDIN 211 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~-la~~~~~~g~~~~~l~v~dl~~g~~-~~~-------~~~~~~~~~~~wSpDg~~l~y~~~~~~~ 211 (734)
+..+-...|.|-... || +|+|..+|.||.+-.+-. ... ....-+.+.+.|.|--.-++.++.
T Consensus 81 t~~vLDi~w~PfnD~vIA-----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag---- 151 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIA-----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG---- 151 (472)
T ss_pred cccccccccCccCCceee-----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc----
Confidence 445667889996654 55 678889999999764432 111 111224567889887766666553
Q ss_pred CCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 212 GTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
..+.|.+|+++|+.. ++ +. +++..+.+.+|+-||.+|+-+. ....|.++|..++
T Consensus 152 -----------~Dn~v~iWnv~tgea---li-~l-~hpd~i~S~sfn~dGs~l~Ttc----kDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 152 -----------SDNTVSIWNVGTGEA---LI-TL-DHPDMVYSMSFNRDGSLLCTTC----KDKKVRVIDPRRG 205 (472)
T ss_pred -----------CCceEEEEeccCCce---ee-ec-CCCCeEEEEEeccCCceeeeec----ccceeEEEcCCCC
Confidence 234899999999853 22 22 2566888999999999998432 3378999998873
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0026 Score=66.39 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=58.5
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc---ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.+..++|||||++||.++.+ ..|+|+|..+.+.+-.. .++. --+.||||||+|+-...|+
T Consensus 292 ~in~f~FS~DG~~LA~VSqD-----GfLRvF~fdt~eLlg~mkSYFGGL--LCvcWSPDGKyIvtGGEDD---------- 354 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQD-----GFLRIFDFDTQELLGVMKSYFGGL--LCVCWSPDGKYIVTGGEDD---------- 354 (636)
T ss_pred cccceeEcCCCceEEEEecC-----ceEEEeeccHHHHHHHHHhhccce--EEEEEcCCccEEEecCCcc----------
Confidence 46679999999999987743 47999998876643221 1111 3469999999988766543
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD 259 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp 259 (734)
--+|| .+. +.++|-....+..|+..++|.|
T Consensus 355 ----LVtVw--Sf~----erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 355 ----LVTVW--SFE----ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ----eEEEE--Eec----cceEEEeccccccceeeEeecc
Confidence 12344 332 2334545445566877777766
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.064 Score=55.72 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=121.3
Q ss_pred EEEeeEEeCCCCcE-EEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 142 TALKLYAFSDNGKH-FAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 142 ~~~~~~~~SPDG~~-la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
..++.++|||..-+ +|.+.+ ..+-+++..+-..+. .....-...+..|-.||+-++....
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~------------ 88 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE------------ 88 (487)
T ss_pred CcceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC------------
Confidence 45889999995433 454443 345566665544332 1111112367888899976554321
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce-e
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK-T 298 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~ 298 (734)
...|.+.+..+. ..+..+.....+ .....|+|++..++.+.+ +...+.+||+.+. ... .
T Consensus 89 ----sG~V~vfD~k~r--~iLR~~~ah~ap--v~~~~f~~~d~t~l~s~s---Dd~v~k~~d~s~a---------~v~~~ 148 (487)
T KOG0310|consen 89 ----SGHVKVFDMKSR--VILRQLYAHQAP--VHVTKFSPQDNTMLVSGS---DDKVVKYWDLSTA---------YVQAE 148 (487)
T ss_pred ----cCcEEEeccccH--HHHHHHhhccCc--eeEEEecccCCeEEEecC---CCceEEEEEcCCc---------EEEEE
Confidence 113555553321 111122221122 234678999998886553 3367778888872 111 2
Q ss_pred eeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 299 VIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 299 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
+....+.... .|+|-.+++++... .++.|-.||..... ..+..-+.+..++.+..-.++.+++++ |-++
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGs---YDg~vrl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasA---gGn~ 218 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGS---YDGKVRLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASA---GGNS 218 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecC---CCceEEEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEc---CCCe
Confidence 2222232222 28888888887644 45678889987653 122222334666766655546777665 3368
Q ss_pred EEEEECCCCce-eeeeCCCCceEEeeccCcccceE
Q psy4818 378 MDLHDLNTGKR-LHSFPLDLGQITHISGRRKYNEV 411 (734)
Q Consensus 378 l~~~dl~~g~~-~~~l~~~~g~v~~~~~~~d~~~l 411 (734)
+.+||+.+|.. +.......-+|+++....++..+
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 99999965653 22222234566666665555444
|
|
| >KOG2183|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0047 Score=63.00 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=82.4
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc---HHHHHHHHhcCeEEEEEecccCC---CCCchhhhcccc
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS---ISRCMFLRHFNGIYAIPNIRGGG---ELGEDWHNAGRL 542 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG~~---~~g~~~~~~~~~ 542 (734)
-.+.+...+....+-..+..|+++|. |- ..... .|. .-+.....+.+-.++.+..|-=| -||..-+.....
T Consensus 62 ~~tF~qRylin~~fw~~g~gPIffYt-GN-EGdie-~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~h 138 (492)
T KOG2183|consen 62 NKTFDQRYLINDDFWKKGEGPIFFYT-GN-EGDIE-WFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARH 138 (492)
T ss_pred ccceeeEEEEecccccCCCCceEEEe-CC-cccHH-HHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhh
Confidence 34556666666555444457777664 32 22211 111 11234455678889999999622 223221111110
Q ss_pred ---ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEE-EEcCCcch
Q psy4818 543 ---LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAA-LILVGALD 604 (734)
Q Consensus 543 ---~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~-v~~~~~~d 604 (734)
..-+..+.|+...+.+|....-.....|.++|+||||+|++|.=.++|++..++ .+.+|++-
T Consensus 139 lgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~ 204 (492)
T KOG2183|consen 139 LGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLY 204 (492)
T ss_pred hccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEe
Confidence 112345789999999998775556678999999999999999999999977655 46777653
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0017 Score=69.63 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=58.0
Q ss_pred HHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC
Q psy4818 510 RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR 589 (734)
Q Consensus 510 ~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~ 589 (734)
+.+.|.+.||.+ ..|++| +|-+|+.... ....++++...++.+.++ ....++.|+||||||+++...+.++
T Consensus 113 li~~L~~~GY~~-~~dL~g---~gYDwR~~~~---~~~~~~~Lk~lIe~~~~~--~g~~kV~LVGHSMGGlva~~fl~~~ 183 (440)
T PLN02733 113 MIEQLIKWGYKE-GKTLFG---FGYDFRQSNR---LPETMDGLKKKLETVYKA--SGGKKVNIISHSMGGLLVKCFMSLH 183 (440)
T ss_pred HHHHHHHcCCcc-CCCccc---CCCCcccccc---HHHHHHHHHHHHHHHHHH--cCCCCEEEEEECHhHHHHHHHHHHC
Confidence 456678889877 679998 7777776421 122356676677766554 2235799999999999999999888
Q ss_pred CCc----eeEEEEcCC
Q psy4818 590 PEL----YGAALILVG 601 (734)
Q Consensus 590 p~~----~~a~v~~~~ 601 (734)
|+. .+..|+.++
T Consensus 184 p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 184 SDVFEKYVNSWIAIAA 199 (440)
T ss_pred CHhHHhHhccEEEECC
Confidence 874 355555444
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.024 Score=55.33 Aligned_cols=228 Identities=15% Similarity=0.138 Sum_probs=124.8
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC------cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK------DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~------~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
.+..+.|.|-...|+ +|+...+|.++|...-. .+++ ... ..+++|.|.|..|+......
T Consensus 174 evn~l~FHPre~ILi-----S~srD~tvKlFDfsK~saKrA~K~~qd-~~~--vrsiSfHPsGefllvgTdHp------- 238 (430)
T KOG0640|consen 174 EVNDLDFHPRETILI-----SGSRDNTVKLFDFSKTSAKRAFKVFQD-TEP--VRSISFHPSGEFLLVGTDHP------- 238 (430)
T ss_pred cccceeecchhheEE-----eccCCCeEEEEecccHHHHHHHHHhhc-cce--eeeEeecCCCceEEEecCCC-------
Confidence 366788999998777 34455789999976422 1221 122 25889999999888766422
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCC--CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPN--GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
.+.++++.|-+- .+-..|+ +.+-+..+.+|+.|+. +++.+. ...|.+||--+ .+++.
T Consensus 239 ---------~~rlYdv~T~Qc---fvsanPd~qht~ai~~V~Ys~t~~l-YvTaSk---DG~IklwDGVS--~rCv~--- 297 (430)
T KOG0640|consen 239 ---------TLRLYDVNTYQC---FVSANPDDQHTGAITQVRYSSTGSL-YVTASK---DGAIKLWDGVS--NRCVR--- 297 (430)
T ss_pred ---------ceeEEeccceeE---eeecCcccccccceeEEEecCCccE-EEEecc---CCcEEeecccc--HHHHH---
Confidence 466667776542 1212222 1234567899999984 444433 25788998655 22221
Q ss_pred Cceeeeccccce--E--EEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC--CCceeEEEEEeeCCEEEE
Q psy4818 295 PLKTVIPGMDHH--H--EIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED--ENRTLDVVAAVANNKLIV 368 (734)
Q Consensus 295 ~~~~l~~~~~~~--~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~ 368 (734)
. +.....+ . ..|+.+|++|+ + .|.+.-+++|.+.++.. +++.+..+ .......-..++..-=|+
T Consensus 298 ---t-~~~AH~gsevcSa~Ftkn~kyiL--s--SG~DS~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyV 367 (430)
T KOG0640|consen 298 ---T-IGNAHGGSEVCSAVFTKNGKYIL--S--SGKDSTVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYV 367 (430)
T ss_pred ---H-HHhhcCCceeeeEEEccCCeEEe--e--cCCcceeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceE
Confidence 1 1111111 1 23888887655 2 24455688888877642 23333221 111122112222121222
Q ss_pred EEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEec
Q psy4818 369 HYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 369 ~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss 417 (734)
..-+.....+..||-.++..+..+.+. .+.+..+.-+|.+. .++.++.
T Consensus 368 l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsd 416 (430)
T KOG0640|consen 368 LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSD 416 (430)
T ss_pred EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecc
Confidence 233344467999998888766666654 55555555555543 3444443
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.2 Score=49.09 Aligned_cols=238 Identities=16% Similarity=0.155 Sum_probs=118.5
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC-CCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-GKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~-g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
-+++.++|||.-..++-+ |+...++++|+++. |...+... .....-...||-||..+|-...+.
T Consensus 28 DsIS~l~FSP~~~~~~~A----~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk--------- 94 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAA----GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK--------- 94 (347)
T ss_pred cchheeEeccccCceEEe----cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC---------
Confidence 458899999944433333 33445789999875 44333111 111125689999997777666544
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
++.+|+|.+++...+-.++. -+-...|-+...+-.+...+ -...|..||... . .++..
T Consensus 95 -------~~k~wDL~S~Q~~~v~~Hd~-----pvkt~~wv~~~~~~cl~TGS--WDKTlKfWD~R~-~-------~pv~t 152 (347)
T KOG0647|consen 95 -------QAKLWDLASGQVSQVAAHDA-----PVKTCHWVPGMNYQCLVTGS--WDKTLKFWDTRS-S-------NPVAT 152 (347)
T ss_pred -------ceEEEEccCCCeeeeeeccc-----ceeEEEEecCCCcceeEecc--cccceeecccCC-C-------Ceeee
Confidence 68889999987654433222 23346666555433333222 236889999876 1 12222
Q ss_pred eeccccceEEEEEecC-CeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 299 VIPGMDHHHEIIANNG-PELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 299 l~~~~~~~~~~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
+- -.+..+ ..|- .-++++... .+ .|.+++|+++. ...+....+. ...+..+..+.++..++...-.|+-.
T Consensus 153 ~~-LPeRvY---a~Dv~~pm~vVata--~r-~i~vynL~n~~-te~k~~~SpL-k~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 153 LQ-LPERVY---AADVLYPMAVVATA--ER-HIAVYNLENPP-TEFKRIESPL-KWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred ee-ccceee---ehhccCceeEEEec--CC-cEEEEEcCCCc-chhhhhcCcc-cceeeEEEEEecCCceEeeeecceEE
Confidence 11 111111 1221 123333322 23 38888887643 1122222222 33344555554444445555555444
Q ss_pred EEEEECCCCceeeee----------CCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSF----------PLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l----------~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+| .+.....+ ..+ .+.|.++.+.|-.+.++-..+. +.+--+|-
T Consensus 224 iq~id--~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD----Gtf~FWDk 280 (347)
T KOG0647|consen 224 IQYID--DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD----GTFSFWDK 280 (347)
T ss_pred EEecC--CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCC----ceEEEecc
Confidence 44443 33111111 111 4456667777765555544333 23444554
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.2 Score=55.10 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=138.8
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
+...+.++.+|.|...++ +..+ ..|.+|+..+++.+.....+ ..-...|-|-++.|+......
T Consensus 372 HR~dVRsl~vS~d~~~~~--Sga~----~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~G---------- 434 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLA--SGAG----ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNG---------- 434 (888)
T ss_pred chhheeEEEeecCceeee--ecCC----CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCC----------
Confidence 345688899999987665 2212 35899999998876533222 224567788888887766432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC-----CCCCCc-ccCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH-----SLPDGK-ISGK 293 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~-----~~~~~~-l~~~ 293 (734)
.|-+.++.+.. ++-..+.+.+...+++.+||++..+-.+. .+.|..||.. .|.+.+ |+
T Consensus 435 ------el~vfdlaS~~----l~Eti~AHdgaIWsi~~~pD~~g~vT~sa----DktVkfWdf~l~~~~~gt~~k~ls-- 498 (888)
T KOG0306|consen 435 ------ELQVFDLASAS----LVETIRAHDGAIWSISLSPDNKGFVTGSA----DKTVKFWDFKLVVSVPGTQKKVLS-- 498 (888)
T ss_pred ------ceEEEEeehhh----hhhhhhccccceeeeeecCCCCceEEecC----CcEEEEEeEEEEeccCcccceeee--
Confidence 46666766542 11112234456778999999999874322 2445555432 111111 11
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
..-.+...-.+..... +||||+.+++.-=. ..-++|.+| +-+. .-.|..+. -.+..+.+..+..++++.+.
T Consensus 499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLd--nTVkVyflD--tlKF--flsLYGHk--LPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLD--NTVKVYFLD--TLKF--FLSLYGHK--LPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred eccceEEeccccEEEEEEcCCCcEEEEEecc--CeEEEEEec--ceee--eeeecccc--cceeEEeccCCcCeEEeccC
Confidence 0000111111222333 89999987764321 134566655 3331 12343333 33444555555788887766
Q ss_pred CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ ..+.+|-+.=|...+.+-.++.+|.++.+-|+ ..++|+++-. ..+-.||.
T Consensus 571 D--KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD---~kvKqWDg 621 (888)
T KOG0306|consen 571 D--KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKD---GKVKQWDG 621 (888)
T ss_pred C--CceEEeccccchhhhhhhcccCceeEEEEccc-ceeEEEecCc---ceEEeech
Confidence 5 46888877668876777666667777777774 4566666543 35666765
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.052 Score=55.12 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=68.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+...+||||+..+.+.+- ...+++||+..|..+....+.. ...+++|.|-+++|+-.+.+... .+ ...+
T Consensus 126 iydL~Ws~d~~~l~s~s~-----dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~---~~--~~~~ 195 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSV-----DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHP---EG--FSAK 195 (434)
T ss_pred hhhhhccCCCceeeeeec-----cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCccc---ce--eeee
Confidence 557899999999987653 3579999999998654333322 34789999999988877665410 00 0001
Q ss_pred CCcEEEEEE-----CCCC---CCCCeeEEecCCCCeeEEEEEEecCCcEEEE
Q psy4818 223 MGQKIYYHV-----LGTE---QDKDIPVVEFPNGRSLGLHSEVTDCGRYLLV 266 (734)
Q Consensus 223 ~~~~l~~~~-----l~t~---~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~ 266 (734)
.-..++++. .+.. ......+|...--..|+...+|||||..++.
T Consensus 196 ~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 196 LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 111223322 1111 1111224443333457888999999998874
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.15 Score=50.96 Aligned_cols=149 Identities=13% Similarity=0.042 Sum_probs=80.5
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHI 172 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v 172 (734)
..+.+++|+.++++.... ....||+... ++....++.. ..+..++|++||...++... .. ....+
T Consensus 28 s~AvS~dg~~~A~v~~~~--~~~~L~~~~~-~~~~~~~~~g--------~~l~~PS~d~~g~~W~v~~~---~~-~~~~~ 92 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGD--GGRSLYVGPA-GGPVRPVLTG--------GSLTRPSWDPDGWVWTVDDG---SG-GVRVV 92 (253)
T ss_pred ceEECCCCCeEEEEEEcC--CCCEEEEEcC-CCcceeeccC--------CccccccccCCCCEEEEEcC---CC-ceEEE
Confidence 344458999999988333 2345777654 3444444421 24788999999775554332 21 12222
Q ss_pred EECCCCCc--cccccc-cc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC--CeeE--Ee
Q psy4818 173 KDVDTGKD--YPEVLK-NV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK--DIPV--VE 244 (734)
Q Consensus 173 ~dl~~g~~--~~~~~~-~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~--~~~v--~~ 244 (734)
.+..+|+. +..... .. .+..+.+||||.+++++..... ..+|++..+-..... ..+. ..
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-------------~~~v~va~V~r~~~g~~~~l~~~~~ 159 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-------------GGRVYVAGVVRDGDGVPRRLTGPRR 159 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC-------------CCeEEEEEEEeCCCCCcceeccceE
Confidence 24444432 211111 11 4578999999999999986431 235665543321111 1110 01
Q ss_pred -cCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 245 -FPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 245 -~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
......-..++.|+++++.+++...
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ecccccCcceeeeecCCCEEEEEeCC
Confidence 0011123457999999997776543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0055 Score=66.85 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=87.1
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH-HHHHHHHhcCeEEEEEecccCCCCC----chhhh--ccccc
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI-SRCMFLRHFNGIYAIPNIRGGGELG----EDWHN--AGRLL 543 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~~~~g----~~~~~--~~~~~ 543 (734)
.|...+.+|.++ + ...+..+-||+.......... .+...++ +||+++.-|- |+.+.. ..|.. ....+
T Consensus 16 ~i~fev~LP~~W--N--gR~~~~GgGG~~G~i~~~~~~~~~~~~~~-~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~d 89 (474)
T PF07519_consen 16 NIRFEVWLPDNW--N--GRFLQVGGGGFAGGINYADGKASMATALA-RGYATASTDS-GHQGSAGSDDASFGNNPEALLD 89 (474)
T ss_pred eEEEEEECChhh--c--cCeEEECCCeeeCcccccccccccchhhh-cCeEEEEecC-CCCCCcccccccccCCHHHHHH
Confidence 677778888865 2 235666666665444332210 0223455 6999999983 332221 12221 11223
Q ss_pred cCCCchhHHHHHHHHHHHcCC-CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhc
Q psy4818 544 KKQNCFDDFQAAAEYMINKKY-TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML 606 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~-~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~ 606 (734)
++...+.+...+.+.|++..| ..|++-...|.|.||--.+.++.++|+.|.++|+.+|..++.
T Consensus 90 fa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 90 FAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 445556677778888888755 578899999999999999999999999999999999976553
|
It also includes several bacterial homologues of unknown function. |
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.34 Score=50.09 Aligned_cols=226 Identities=12% Similarity=0.103 Sum_probs=127.5
Q ss_pred EEEEEEECCCCCc--------cccc--ccccc-cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCC
Q psy4818 168 NTLHIKDVDTGKD--------YPEV--LKNVK-FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQ 236 (734)
Q Consensus 168 ~~l~v~dl~~g~~--------~~~~--~~~~~-~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~ 236 (734)
.+++|+|.+.-.- .++. .+... ..++.|++....-..+..++ ..|.+|++....
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d---------------~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD---------------HTICLWDINAES 211 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC---------------CcEEEEeccccc
Confidence 5799999664321 1111 11111 25688988877666555432 368888877544
Q ss_pred CC-----CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-E
Q psy4818 237 DK-----DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-I 310 (734)
Q Consensus 237 ~~-----~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~ 310 (734)
.+ .+.+|.. +...+..++|.+-.+.++-+.. +...+.+||+.++ +.+. .............. |
T Consensus 212 ~~~~~~~p~~~~~~--h~~~VeDV~~h~~h~~lF~sv~---dd~~L~iwD~R~~-~~~~-----~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSG--HEDVVEDVAWHPLHEDLFGSVG---DDGKLMIWDTRSN-TSKP-----SHSVKAHSAEVNCVAF 280 (422)
T ss_pred cCCccccceEEeec--CCcceehhhccccchhhheeec---CCCeEEEEEcCCC-CCCC-----cccccccCCceeEEEe
Confidence 32 1234433 3335667899998888876553 3368999999862 2111 11111222223333 8
Q ss_pred EecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCC-Ccee
Q psy4818 311 ANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNT-GKRL 389 (734)
Q Consensus 311 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~-g~~~ 389 (734)
.|-+..|+..... +..|.++|+.+-.. .+. .+.+.+..+++--+.+....+++++..+ .+|.+||+.. |+..
T Consensus 281 np~~~~ilAT~S~---D~tV~LwDlRnL~~-~lh-~~e~H~dev~~V~WSPh~etvLASSg~D--~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 281 NPFNEFILATGSA---DKTVALWDLRNLNK-PLH-TFEGHEDEVFQVEWSPHNETVLASSGTD--RRLNVWDLSRIGEEQ 353 (422)
T ss_pred CCCCCceEEeccC---CCcEEEeechhccc-Cce-eccCCCcceEEEEeCCCCCceeEecccC--CcEEEEecccccccc
Confidence 8887766654332 45699999976541 122 2233334554444445556788777666 5788888832 3221
Q ss_pred e---------e--eC--CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 390 H---------S--FP--LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 390 ~---------~--l~--~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. + +. +....|..++++|....++.+.+.. ..+.++.+
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD---N~LqIW~~ 403 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED---NILQIWQM 403 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC---ceEEEeec
Confidence 0 0 11 1134466788888887777766655 36777776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.55 Score=55.85 Aligned_cols=264 Identities=10% Similarity=0.099 Sum_probs=127.7
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEE-eCCCCCeEEEeCCCCcCC-CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEE--
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQ-RNLTGSTEVFLDPNKLSK-DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIK-- 173 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~l~d~~~~~~-~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~-- 173 (734)
...+.+|+........ ..+-+. ...++..+++.+...-.. .....+-++.+-+|...|.++.. +| +|.++
T Consensus 31 ~~sd~i~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~-~G----di~~~~~ 104 (928)
T PF04762_consen 31 SDSDSIYFVLGPNEID-YVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALA-SG----DIILVRE 104 (928)
T ss_pred cCCCeEEEEECCCCcc-eEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEEC-Cc----eEEEEEc
Confidence 3445677766543221 222221 122334456666543211 12345778888899988887764 22 46666
Q ss_pred --ECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCC-----CCC---CCC--cccccCCcEEEEEECCCCCCC---
Q psy4818 174 --DVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDIN-----GTA---DGT--ETTAHMGQKIYYHVLGTEQDK--- 238 (734)
Q Consensus 174 --dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~-----~~~---~~~--~~~~~~~~~l~~~~l~t~~~~--- 238 (734)
+..+.+.-....-.......+||||+..|++++....- ..+ +.. ..+.+.. .-+.+|=+..+
T Consensus 105 ~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~---~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 105 DPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGES---KHVSVGWGKKETQF 181 (928)
T ss_pred cCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCC---ceeeeccCcccCcc
Confidence 44444321111111123688999999999988743210 000 000 0000000 00111100000
Q ss_pred --------------------CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC--CceEEEEeCCCCCCCcccCCCCc
Q psy4818 239 --------------------DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ--GSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 239 --------------------~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
+..... .++ ....++|-.||+|+++..-.... ...+.+|+-++ . |.....
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s--~dd-~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~---L~stSE- 253 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLS--WDD-GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-E---LQSTSE- 253 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccc--cCC-CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-e---EEeccc-
Confidence 000000 111 23568999999999988763222 36788888765 1 111000
Q ss_pred eeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 297 KTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 297 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
-+.+.... -.|-|.|..|+-... .....+|..+.-++-....+..-. ......+....|..++.+++....+.
T Consensus 254 --~v~gLe~~-l~WrPsG~lIA~~q~-~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-- 326 (928)
T PF04762_consen 254 --PVDGLEGA-LSWRPSGNLIASSQR-LPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-- 326 (928)
T ss_pred --cCCCccCC-ccCCCCCCEEEEEEE-cCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC--
Confidence 01111111 139999987776553 444567888887664332222212 12234456677766566665555432
Q ss_pred eEEEEECCCC
Q psy4818 377 VMDLHDLNTG 386 (734)
Q Consensus 377 ~l~~~dl~~g 386 (734)
|.+|-..+-
T Consensus 327 -vqLWt~~NY 335 (928)
T PF04762_consen 327 -VQLWTRSNY 335 (928)
T ss_pred -ceEEEeeCC
Confidence 666755433
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0065 Score=66.12 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred EEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccc---------c--------HHHHHHHHhcCeEEEEE
Q psy4818 462 VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTF---------S--------ISRCMFLRHFNGIYAIP 524 (734)
Q Consensus 462 ~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~---------~--------~~~~~~l~~~G~~v~~~ 524 (734)
+.+....+..+..+++..++ .....|+||++.||||++....+ . ..-..|.. -..++.+
T Consensus 16 l~~~~~~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~--~an~l~i 91 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK--FANLLFI 91 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG--TSEEEEE
T ss_pred EecCCCCCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc--ccceEEE
Confidence 33433456678777776655 24678999999999998653211 0 01123432 4778999
Q ss_pred ecccCCCCCchhhhccccccCCCchhHHHHHHHH-HHHcCCCCCCcEEEEEcChHHHHHHHHHh----cC------CCce
Q psy4818 525 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY-MINKKYTKPKYITIMGGSNGGLLVGACLN----QR------PELY 593 (734)
Q Consensus 525 ~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~-l~~~~~~d~~ri~i~G~S~GG~~~~~~~~----~~------p~~~ 593 (734)
|.+-|.||...-........-....+|+..+++. +..........+.|.|.||||..+..++. +. +=.+
T Consensus 92 D~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inL 171 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINL 171 (415)
T ss_dssp --STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEE
T ss_pred eecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccc
Confidence 9887777764422221111112334555555443 33344455668999999999987766543 23 2247
Q ss_pred eEEEEcCCcchhc
Q psy4818 594 GAALILVGALDML 606 (734)
Q Consensus 594 ~a~v~~~~~~d~~ 606 (734)
+++++..|++|..
T Consensus 172 kGi~IGng~~dp~ 184 (415)
T PF00450_consen 172 KGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEESE-SBHH
T ss_pred ccceecCcccccc
Confidence 9999999987754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0095 Score=59.57 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=63.2
Q ss_pred eEEEeCCCCcCCC-----CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc---ccccCeeEEEcC
Q psy4818 127 TEVFLDPNKLSKD-----GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK---NVKFPSISWTHD 198 (734)
Q Consensus 127 ~~~l~d~~~~~~~-----~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~---~~~~~~~~wSpD 198 (734)
..+|+|...+... +...+..++|||||.+||-+++.+ ..|+|+.+.+|+.+.+-.. .+...+++||||
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc----eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 3455665544332 345688899999999999877644 6899999999986443222 345679999999
Q ss_pred CcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCC
Q psy4818 199 HKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTE 235 (734)
Q Consensus 199 g~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~ 235 (734)
++.|..++..+ .|++.+|+..
T Consensus 230 s~~L~~sS~Te----------------TVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTE----------------TVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCC----------------eEEEEEeccc
Confidence 99877766432 6777777654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.14 Score=52.31 Aligned_cols=153 Identities=12% Similarity=0.031 Sum_probs=75.9
Q ss_pred EEeeEEeCCCCcEEEEEEeC-----CC--CceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSK-----SG--SDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~-----~g--~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
......+.|||+. .|.... .. .+...||.+|..++.. ..... -....+++|||||+.+|++-..
T Consensus 112 r~ND~~v~pdG~~-wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-~l~~~~~~~~NGla~SpDg~tly~aDT~------ 183 (307)
T COG3386 112 RPNDGVVDPDGRI-WFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-RLLDDDLTIPNGLAFSPDGKTLYVADTP------ 183 (307)
T ss_pred CCCceeEcCCCCE-EEeCCCccccCccccCCcceEEEEcCCCCEE-EeecCcEEecCceEECCCCCEEEEEeCC------
Confidence 3456788999984 444332 11 2234688888754432 22222 1223689999999988887542
Q ss_pred CCCcccccCCcEEEEEECCC---CCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 215 DGTETTAHMGQKIYYHVLGT---EQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t---~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
..+|++..++. ........+....+++.--+.+...||..-+ .. . .....|-+++.++ ..
T Consensus 184 ---------~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a-~-~~g~~v~~~~pdG-~l---- 246 (307)
T COG3386 184 ---------ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AA-V-WGGGRVVRFNPDG-KL---- 246 (307)
T ss_pred ---------CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ec-c-cCCceEEEECCCC-cE----
Confidence 23688877652 1111111111111222223455556665432 11 1 1224666776664 11
Q ss_pred CCCCceeeecc-c-cceEEEEEecCCeEEEEeCCC
Q psy4818 292 GKFPLKTVIPG-M-DHHHEIIANNGPELIVKTTKN 324 (734)
Q Consensus 292 ~~~~~~~l~~~-~-~~~~~~~s~dg~~l~~~s~~~ 324 (734)
...+.-. . -....+-.++.+.||+++++.
T Consensus 247 ----~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 247 ----LGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ----EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 1111111 1 111123457778888888765
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0074 Score=66.40 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=67.1
Q ss_pred eEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 167 WNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
...|.++|+.|.+.++.-. ...+...++||||||+|+-.+.|. .|+.|++-++.--|.+.++.
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~----------------tIr~wDlpt~~lID~~~vd~ 618 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS----------------TIRTWDLPTGTLIDGLLVDS 618 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC----------------cEEEEeccCcceeeeEecCC
Confidence 3689999998887655433 223457899999999999888754 69999999887655555443
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDL 282 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~ 282 (734)
+ ..++++||.|.+||-+.. +.+.||+|.-
T Consensus 619 ~-----~~sls~SPngD~LAT~Hv---d~~gIylWsN 647 (910)
T KOG1539|consen 619 P-----CTSLSFSPNGDFLATVHV---DQNGIYLWSN 647 (910)
T ss_pred c-----ceeeEECCCCCEEEEEEe---cCceEEEEEc
Confidence 2 246899999999996542 2367888853
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.58 Score=50.02 Aligned_cols=214 Identities=13% Similarity=0.054 Sum_probs=118.4
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.+..++++|+++...... ...+.++|+.+-+.+.....+....+++++||++.+|...... ..
T Consensus 77 ~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-------------~~ 139 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD----SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-------------GN 139 (381)
T ss_pred cceeeCCCCCeEEEecCC----CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc-------------CC
Confidence 467899999976544322 2479999977766543222222346899999999888776421 23
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD 304 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~ 304 (734)
..+...+-.+...... ++.. ..+ .+.+++|||+.++... ...+.|.++|..+.. +..............
T Consensus 140 ~~vsvid~~t~~~~~~-~~vG-~~P---~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~ 208 (381)
T COG3391 140 NTVSVIDAATNKVTAT-IPVG-NTP---TGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNS---VVRGSVGSLVGVGTG 208 (381)
T ss_pred ceEEEEeCCCCeEEEE-EecC-CCc---ceEEECCCCCeEEEEe---cCCCeEEEEeCCCcc---eeccccccccccCCC
Confidence 4677777665532221 2222 123 5789999999988754 233789999976621 110000000111112
Q ss_pred ceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEe-ecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 305 HHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL-IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 305 ~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
...-.+++||.++|+.-.... ...+..+|..++. .... .+........-...+++..+|+.... ...+++.|.
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~-~~~v~~id~~~~~---v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid~ 282 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSG-SNNVLKIDTATGN---VTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVIDG 282 (381)
T ss_pred CceEEECCCCCEEEEEeccCC-CceEEEEeCCCce---EEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEeC
Confidence 222348999998887654322 3568889987654 2221 11111111111222343455554433 467888887
Q ss_pred CCCceeeee
Q psy4818 384 NTGKRLHSF 392 (734)
Q Consensus 384 ~~g~~~~~l 392 (734)
.+......+
T Consensus 283 ~~~~v~~~~ 291 (381)
T COG3391 283 ATDRVVKTG 291 (381)
T ss_pred CCCceeeee
Confidence 665544333
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.023 Score=57.02 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=81.6
Q ss_pred eCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC---cccccccccccCeeEEEcCCcEEEEEEE
Q psy4818 131 LDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK---DYPEVLKNVKFPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~---~~~~~~~~~~~~~~~wSpDg~~l~y~~~ 207 (734)
+|..-+.. ++.++..++|||..+-+.++.+-.| .|.+||+..+. .+.....+.++.-+.|+-+-..|++..+
T Consensus 248 vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 248 VDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred ecCccccc-cccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 35444432 5678889999999999998887765 49999999884 2222333445578999877764544443
Q ss_pred ecCCCCCCCCcccccCCcEEEEEECCCCCC-CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 208 CDINGTADGTETTAHMGQKIYYHVLGTEQD-KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~-~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
+. .+.+|+|..-+. +.+..|.-.. .-+.++.|+|....++..+ +..++|-+||+..
T Consensus 323 dG----------------t~~iwDLR~~~~~~pVA~fk~Hk--~pItsieW~p~e~s~iaas---g~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DG----------------TLSIWDLRQFKSGQPVATFKYHK--APITSIEWHPHEDSVIAAS---GEDNQITIWDLSV 379 (440)
T ss_pred Cc----------------eEEEEEhhhccCCCcceeEEecc--CCeeEEEeccccCceEEec---cCCCcEEEEEeec
Confidence 22 466666654332 2233444322 2456899999766655433 2337899999876
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.046 Score=57.32 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=93.4
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
..-.|+|||..|+-...|. .|..|...+-- ..+++-. ...+..++|.|+...++|...
T Consensus 108 ~~gRW~~dGtgLlt~GEDG----------------~iKiWSrsGML-RStl~Q~----~~~v~c~~W~p~S~~vl~c~g- 165 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGEDG----------------VIKIWSRSGML-RSTVVQN----EESIRCARWAPNSNSIVFCQG- 165 (737)
T ss_pred hhcccCCCCceeeeecCCc----------------eEEEEeccchH-HHHHhhc----CceeEEEEECCCCCceEEecC-
Confidence 5678999999998766433 45555533211 1111111 124567899999999998542
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE 349 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 349 (734)
..+++-++.-. .++ ..|+ .+..-.... |++..+.|+ .+|.+++.-.||.-+. .|+..
T Consensus 166 ----~h~~IKpL~~n--~k~---i~Wk---AHDGiiL~~~W~~~s~lI~----sgGED~kfKvWD~~G~------~Lf~S 223 (737)
T KOG1524|consen 166 ----GHISIKPLAAN--SKI---IRWR---AHDGLVLSLSWSTQSNIIA----SGGEDFRFKIWDAQGA------NLFTS 223 (737)
T ss_pred ----CeEEEeecccc--cce---eEEe---ccCcEEEEeecCcccccee----ecCCceeEEeecccCc------ccccC
Confidence 47788777651 110 1121 111112222 777766444 2355677777886543 23332
Q ss_pred -CCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEe
Q psy4818 350 -DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 350 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~s 416 (734)
.++..+.++.|.. +.+|+..+.+. + ++..| .|+|..+++++||..+...++
T Consensus 224 ~~~ey~ITSva~np-d~~~~v~S~nt---~------------R~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 224 AAEEYAITSVAFNP-EKDYLLWSYNT---A------------RFSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred Chhccceeeeeecc-ccceeeeeeee---e------------eecCCCccceEEEEEcCCCceeecccc
Confidence 2356677777766 35554443221 1 13334 678888899999877765544
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.66 Score=43.41 Aligned_cols=246 Identities=12% Similarity=0.087 Sum_probs=124.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEE----EECCCCCcccc---------cc-cccccCeeEEEcCCcEEEEEEE
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHI----KDVDTGKDYPE---------VL-KNVKFPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v----~dl~~g~~~~~---------~~-~~~~~~~~~wSpDg~~l~y~~~ 207 (734)
..+..+.|.|.|+..|..++. ....|.. .|+..+..... .. ....+.-.+|||+|.-|+-.++
T Consensus 33 qairav~fhp~g~lyavgsns---kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNS---KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred hheeeEEecCCCceEEeccCC---ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 457889999999988865532 2234433 33433321110 01 1112345799999998876664
Q ss_pred ecCCCCCCCCcccccCCcEEEEEECCCCCCC-CeeEEecCCCCeeEEEEEEec---CCcEEEEEEecCCCCceEEEEeCC
Q psy4818 208 CDINGTADGTETTAHMGQKIYYHVLGTEQDK-DIPVVEFPNGRSLGLHSEVTD---CGRYLLVSTSNNTQGSDLHYFDLH 283 (734)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~-~~~v~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~~~~~i~~~d~~ 283 (734)
+. .-++...+.+|.+.. .-+-|.. +++.+..++|-. .|..|+.+. +.....||+-|-.
T Consensus 110 dk--------------~ik~l~fn~dt~~~~g~dle~nm--hdgtirdl~fld~~~s~~~il~s~--gagdc~iy~tdc~ 171 (350)
T KOG0641|consen 110 DK--------------TIKVLPFNADTCNATGHDLEFNM--HDGTIRDLAFLDDPESGGAILASA--GAGDCKIYITDCG 171 (350)
T ss_pred Cc--------------eEEEEecccccccccCcceeeee--cCCceeeeEEecCCCcCceEEEec--CCCcceEEEeecC
Confidence 32 112333333332210 0111222 122334455532 344454433 3344789999887
Q ss_pred CCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC------CCceeEE
Q psy4818 284 SLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED------ENRTLDV 357 (734)
Q Consensus 284 ~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~------~~~~~~~ 357 (734)
.| .++..+...-.......+.+|- ++ .+. ..+..|-.||+.-.. ....+..+ +...+..
T Consensus 172 ~g--------~~~~a~sghtghilalyswn~~-m~-~sg--sqdktirfwdlrv~~---~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 172 RG--------QGFHALSGHTGHILALYSWNGA-MF-ASG--SQDKTIRFWDLRVNS---CVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CC--------CcceeecCCcccEEEEEEecCc-EE-Ecc--CCCceEEEEeeeccc---eeeeccCcccCCCcccceeEE
Confidence 73 3445554433333333455543 22 222 223457777775433 12222211 1123444
Q ss_pred EEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 358 VAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.....++++++...+ +.-.+||+..|..++++......|..+.++|.. ...+.++ +.. .+-+-|+
T Consensus 237 v~vdpsgrll~sg~~d--ssc~lydirg~r~iq~f~phsadir~vrfsp~a-~yllt~s-yd~--~ikltdl 302 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHAD--SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA-HYLLTCS-YDM--KIKLTDL 302 (350)
T ss_pred EEECCCcceeeeccCC--CceEEEEeeCCceeeeeCCCccceeEEEeCCCc-eEEEEec-ccc--eEEEeec
Confidence 4444447787776555 566778887777777776556667777777754 3333443 322 4566666
|
|
| >KOG3967|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.02 Score=52.92 Aligned_cols=111 Identities=12% Similarity=-0.002 Sum_probs=63.8
Q ss_pred EEEEEeccccCCCCCcEEEEecCCCCCcCC-------------cc-ccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 474 MYIIHRVGALRNRRNPVIIYGYGGYGVSVL-------------PT-FSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 474 ~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-------------~~-~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
.+++..++.. ..+.-++|++||..-...+ -+ --+...+.. +.||-|++.|.- .-+.|++.
T Consensus 88 SFiF~s~~~l-t~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv-~~Gygviv~N~N----~~~kfye~ 161 (297)
T KOG3967|consen 88 SFIFMSEDAL-TNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAV-AEGYGVIVLNPN----RERKFYEK 161 (297)
T ss_pred ceEEEChhHh-cCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHH-HcCCcEEEeCCc----hhhhhhhc
Confidence 3455555432 3445589999996322111 01 112233333 469999998854 22334432
Q ss_pred cccc--cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc
Q psy4818 540 GRLL--KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL 592 (734)
Q Consensus 540 ~~~~--~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~ 592 (734)
-+.. .-...++-+..+-.+++.. ..+..+.++.||+||++++-++.++|+.
T Consensus 162 k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 162 KRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred ccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCc
Confidence 1111 1113344555555555533 5677899999999999999999999874
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.4 Score=47.09 Aligned_cols=243 Identities=13% Similarity=0.097 Sum_probs=133.1
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
.......|+|..+........ ++.+.+......... ..+.....+.+.+++++.+|....+.
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~----~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~------------- 95 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSN----DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS------------- 95 (381)
T ss_pred CceeEEcCccCEEEEEeecCc----eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCC-------------
Confidence 346788999988776654332 566666552222111 11112235678888998887665421
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
..|...+..+... +....-.. .-.+++++|||+.+++..... ..+.+.++|..++. .......+
T Consensus 96 --~~v~vid~~~~~~----~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~--------~~~~~~vG 159 (381)
T COG3391 96 --NTVSVIDTATNTV----LGSIPVGL-GPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNK--------VTATIPVG 159 (381)
T ss_pred --CeEEEEcCcccce----eeEeeecc-CCceEEECCCCCEEEEEeccc-CCceEEEEeCCCCe--------EEEEEecC
Confidence 2566666443321 11111000 224689999999998765432 34788999988721 11112222
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceE-----eecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 303 MDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT-----LIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 303 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
.......++|+|..+|... .....|..+|.++.. ... ..... .....-....++.++|+....+....
T Consensus 160 ~~P~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~---v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 160 NTPTGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNS---VVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred CCcceEEECCCCCeEEEEe---cCCCeEEEEeCCCcc---eeccccccccccC-CCCceEEECCCCCEEEEEeccCCCce
Confidence 2222234899999888754 234569999976543 111 11111 11111122234456666655443357
Q ss_pred EEEEECCCCceeee-eCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHS-FPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~-l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+|..++..... +....+....+..+|+++.+++..+. ...++.+|.
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~ 282 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDG 282 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeC
Confidence 88899877765332 22222123356677888877766544 567899988
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.04 Score=55.67 Aligned_cols=165 Identities=10% Similarity=0.042 Sum_probs=95.5
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
++.-.++-+.|.|--.-+.++.. + .+++.+||+.||+.+..........+..|+-||..|+-+..|.
T Consensus 129 gH~rrVg~V~wHPtA~NVLlsag--~--Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDK--------- 195 (472)
T KOG0303|consen 129 GHQRRVGLVQWHPTAPNVLLSAG--S--DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDK--------- 195 (472)
T ss_pred ecceeEEEEeecccchhhHhhcc--C--CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccc---------
Confidence 44566888999998877776552 2 2799999999999643322333447899999998887766443
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCe-eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRS-LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
+|.+++..++. ++.+...+.+ -...+.|-.+|+ |+-+.-+.....++-+||..... +.....
T Consensus 196 -------kvRv~dpr~~~----~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~-----eP~~~~ 258 (472)
T KOG0303|consen 196 -------KVRVIDPRRGT----VVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLE-----EPIALQ 258 (472)
T ss_pred -------eeEEEcCCCCc----EeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCccccc-----CcceeE
Confidence 68888776653 3333321111 112456777888 55443333333678888876621 112222
Q ss_pred eeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecC
Q psy4818 298 TVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLN 336 (734)
Q Consensus 298 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 336 (734)
.+-.....-.+++.+|.+.+|+...- +..|-.+.+.
T Consensus 259 elDtSnGvl~PFyD~dt~ivYl~GKG---D~~IRYyEit 294 (472)
T KOG0303|consen 259 ELDTSNGVLLPFYDPDTSIVYLCGKG---DSSIRYFEIT 294 (472)
T ss_pred EeccCCceEEeeecCCCCEEEEEecC---CcceEEEEec
Confidence 22221122233478887766665432 2335555543
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.042 Score=55.15 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=75.8
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
..++-.+++++.+.+|||-.+.. ..+|+++|+.+-+.+.. .........++|||||..|+-.+..
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t---~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeK----------- 194 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTT---SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEK----------- 194 (391)
T ss_pred ccceEeeccCCCCceEEecCCCC---CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccC-----------
Confidence 34567788888888999986654 25799999877654321 1222233678999999988876642
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
..-|+++.+.+++ .+.-|...--+..+.+++||||+.+|..+++. ..|+++.++.
T Consensus 195 ----GTVIRVf~v~~G~--kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T----eTVHiFKL~~ 249 (391)
T KOG2110|consen 195 ----GTVIRVFSVPEGQ--KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT----ETVHIFKLEK 249 (391)
T ss_pred ----ceEEEEEEcCCcc--EeeeeeCCceeeEEEEEEECCCCCeEEEecCC----CeEEEEEecc
Confidence 1235555554443 22222222123456789999999999865432 4677777765
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.075 Score=50.99 Aligned_cols=147 Identities=17% Similarity=0.169 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC------CCceeEEEEcCCcc-hhccccccccCcccccccCCC
Q psy4818 552 FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR------PELYGAALILVGAL-DMLRFNKFTIAYYSESEFGSP 624 (734)
Q Consensus 552 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~~~a~v~~~~~~-d~~~~~~~~~~~~~~~~~g~~ 624 (734)
+..++.+|.++..+ .++-++||||||......+..+ |.+-+-+.+..|+- ..+.... +.... ....|
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de-~v~~v---~~~~~ 195 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDE-TVTDV---LKDGP 195 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCc-chhee---eccCc
Confidence 45678888887544 4789999999999888887653 55545555555544 0111000 00000 01111
Q ss_pred --CCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCC------CCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEe
Q psy4818 625 --NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH------DDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVE 696 (734)
Q Consensus 625 --~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~------D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 696 (734)
.....++++... +..+.. ++. +|++.|+- |.+||...++..+.-+... ++.+.-.+|
T Consensus 196 ~~~~t~y~~y~~~n--~k~v~~---~~e---vl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~-------~ksy~e~~~ 260 (288)
T COG4814 196 GLIKTPYYDYIAKN--YKKVSP---NTE---VLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKN-------GKSYIESLY 260 (288)
T ss_pred cccCcHHHHHHHhc--ceeCCC---CcE---EEEEecccccCCcCCCceechHhHHHHHHhccC-------cceeEEEee
Confidence 111122222211 111221 122 89999874 6799999998888877766 666554445
Q ss_pred CC--CCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 697 QD--AGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 697 ~~--~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+| +-|.-..... .....+..||-
T Consensus 261 ~Gk~a~Hs~lhen~---~v~~yv~~FLw 285 (288)
T COG4814 261 KGKDARHSKLHENP---TVAKYVKNFLW 285 (288)
T ss_pred eCCcchhhccCCCh---hHHHHHHHHhh
Confidence 44 6776543322 33444566654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.11 Score=53.69 Aligned_cols=176 Identities=14% Similarity=0.184 Sum_probs=96.3
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH 305 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~ 305 (734)
.|.+|.+....... .-.--++-+..+.-+|+|.||+-. +-...||+|.+.+|. -+..+..+...
T Consensus 62 ~l~vw~i~k~~~~~----q~~v~Pg~v~al~s~n~G~~l~ag----~i~g~lYlWelssG~--------LL~v~~aHYQ~ 125 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV----QYIVLPGPVHALASSNLGYFLLAG----TISGNLYLWELSSGI--------LLNVLSAHYQS 125 (476)
T ss_pred cccccccCchhhhh----hhcccccceeeeecCCCceEEEee----cccCcEEEEEecccc--------HHHHHHhhccc
Confidence 67777776543211 111113345567889999999842 223689999999942 11112223333
Q ss_pred eEEE-EEecCCeEEEEeCCCCCCceEEEEecCC---CCCC-Cc--eEeecCCCCceeEEEEEeeC--CEEEEEEEeCCce
Q psy4818 306 HHEI-IANNGPELIVKTTKNAPKGKVVTINLNN---PCEK-NW--KTLIPEDENRTLDVVAAVAN--NKLIVHYIQNVRS 376 (734)
Q Consensus 306 ~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~---~~~~-~~--~~l~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~ 376 (734)
.... |+-||..|+ .+.. ++.+..|.+.. .... .. ...+.+. .-.+.++....+ +..+++++.| .
T Consensus 126 ITcL~fs~dgs~ii-Tgsk---Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg~~~rl~TaS~D--~ 198 (476)
T KOG0646|consen 126 ITCLKFSDDGSHII-TGSK---DGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGGTNARLYTASED--R 198 (476)
T ss_pred eeEEEEeCCCcEEE-ecCC---CccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCCccceEEEecCC--c
Confidence 3333 787777555 3322 34466655422 1100 00 1111111 223344444332 2345555555 5
Q ss_pred eEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+.+||+..|..+..+.+| ..+.++..+|.+..+|+..+ -+.+|..++
T Consensus 199 t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~ 246 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTE----EGKIFQNLL 246 (476)
T ss_pred eEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCC----cceEEeeeh
Confidence 7888999888888788776 34667778888777766543 246888877
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.7 Score=43.86 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=79.3
Q ss_pred EEEEecCCcEEEEEEecCCC-----CceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCC
Q psy4818 254 HSEVTDCGRYLLVSTSNNTQ-----GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPK 327 (734)
Q Consensus 254 ~~~~SpDG~~l~~~~~~~~~-----~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~ 327 (734)
+...+|||||.+=+-..... ...+|.|-+.. .+..+......... .|+.|-+.+|++-. .+
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h----------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs---ln 179 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH----------QVELIWNCVGISNGLAWDSDAKKFYYIDS---LN 179 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCC----------CceeeehhccCCccccccccCcEEEEEcc---Cc
Confidence 45789999994322111111 15777776655 11222222111112 38888888888643 35
Q ss_pred ceE--EEEecCCCCCCCceEeecCCC-----CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEE
Q psy4818 328 GKV--VTINLNNPCEKNWKTLIPEDE-----NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQIT 400 (734)
Q Consensus 328 ~~l--~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~ 400 (734)
+.+ |-+|..++...+-+.++.-.. .....++.+..++.|++..-.. ..++.+|+.+|+.+.++.+|.-.++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--GTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--cEEEEECCCCCcEEEEEEcCCCceE
Confidence 667 555577765433333332211 1111233334446666665444 5799999999999999888855565
Q ss_pred eeccC-cccceEEEEE
Q psy4818 401 HISGR-RKYNEVFYGF 415 (734)
Q Consensus 401 ~~~~~-~d~~~l~~~~ 415 (734)
+.++- ++-+.++++.
T Consensus 258 sccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCCCccEEEEEe
Confidence 54443 2234455444
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.06 Score=54.93 Aligned_cols=183 Identities=10% Similarity=0.098 Sum_probs=94.9
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
..+++++||..|+-...|. .+++++.-... ++.++..+..-+-++.|||||+.|+....+
T Consensus 148 k~vaf~~~gs~latgg~dg----------------~lRv~~~Ps~~----t~l~e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDG----------------TLRVWEWPSML----TILEEIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCCEeeeccccc----------------eEEEEecCcch----hhhhhHhhcCccccceeCCCCcEEEEecCC
Confidence 4578888888777665432 45555543221 223333333345678999999999976432
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE--E--EEEecC--CeEEEEeCCCCCCceEEEEecCC--C-CCC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH--E--IIANNG--PELIVKTTKNAPKGKVVTINLNN--P-CEK 341 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~--~--~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~--~-~~~ 341 (734)
...+|++.+|. .+..+.. +...+ . .|+.|+ ..+++.+... +...+..+++.. + ..-
T Consensus 208 -----~~~VW~~~~g~--------~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 208 -----SARVWSVNTGA--------ALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred -----ceEEEEeccCc--------hhhhcCC-cccchhhhhceecccCCCceEEEEEecC-CCCceeEEEeeeecccccc
Confidence 56778888741 2222221 12111 1 255554 3454444432 222244444322 1 100
Q ss_pred CceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCC-CCceEEeeccCcccceEE
Q psy4818 342 NWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHISGRRKYNEVF 412 (734)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~-~~g~v~~~~~~~d~~~l~ 412 (734)
+++..+.. ...+..+...+++++++....+| .+-+++..+=+.++-++- +.+.|+++.++||.+.+.
T Consensus 273 ~~~~~~~~--~~siSsl~VS~dGkf~AlGT~dG--sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 273 RLRKKIKR--FKSISSLAVSDDGKFLALGTMDG--SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLA 340 (398)
T ss_pred chhhhhhc--cCcceeEEEcCCCcEEEEeccCC--cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccc
Confidence 12222222 34566666666677776666554 455666533333333322 256788899999876554
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.069 Score=53.09 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=50.6
Q ss_pred ccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHH
Q psy4818 649 TQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVF 720 (734)
Q Consensus 649 ~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 720 (734)
..+| -|.+.+..|..|+..+.+++++..++. |.++....+.+++|...-..+. .+.+..+.+|
T Consensus 177 ~~~p-~lylYS~~D~l~~~~~ve~~~~~~~~~-------G~~V~~~~f~~S~HV~H~r~~p-~~Y~~~v~~f 239 (240)
T PF05705_consen 177 SRCP-RLYLYSKADPLIPWRDVEEHAEEARRK-------GWDVRAEKFEDSPHVAHLRKHP-DRYWRAVDEF 239 (240)
T ss_pred CCCC-eEEecCCCCcCcCHHHHHHHHHHHHHc-------CCeEEEecCCCCchhhhcccCH-HHHHHHHHhh
Confidence 4556 899999999999999999999999998 9999999999999976543332 4555555555
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=50.30 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=74.0
Q ss_pred ceEEEEeCCCCCCCcccCCCCcee--eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC--CCCceEeecC
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKT--VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC--EKNWKTLIPE 349 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~--l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~~l~~~ 349 (734)
.-|.+||.-+|+.+. ..+. -.+........ |+|||..|+- +.+..|.++|+.-+. ......++..
T Consensus 133 ~PIh~wdaftG~lra-----Sy~~ydh~de~taAhsL~Fs~DGeqlfa-----GykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRA-----SYRAYDHQDEYTAAHSLQFSPDGEQLFA-----GYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred Cceeeeecccccccc-----chhhhhhHHhhhhheeEEecCCCCeEee-----cccceEEEeeccCCCCCCcchhhhhcc
Confidence 568999988854221 0010 01111122333 9999999883 334457777774322 1122333332
Q ss_pred CCC--ceeEEEE-EeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEE
Q psy4818 350 DEN--RTLDVVA-AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYH 426 (734)
Q Consensus 350 ~~~--~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~ 426 (734)
... ..+.-+. .+.+...+........--||.++ .+..+..+-...|.|+.+.+.+++++++ ++...-..|..
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~--~~~pl~llggh~gGvThL~~~edGn~lf---sGaRk~dkIl~ 277 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD--GRRPLQLLGGHGGGVTHLQWCEDGNKLF---SGARKDDKILC 277 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecC--CCCceeeecccCCCeeeEEeccCcCeec---ccccCCCeEEE
Confidence 211 2222222 22223445444333223455543 4555566665577888899999998775 45555567888
Q ss_pred EeC
Q psy4818 427 CNI 429 (734)
Q Consensus 427 ~d~ 429 (734)
+|+
T Consensus 278 WDi 280 (406)
T KOG2919|consen 278 WDI 280 (406)
T ss_pred Eee
Confidence 888
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.17 Score=52.86 Aligned_cols=115 Identities=16% Similarity=0.256 Sum_probs=83.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc--ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP--EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~--~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.++.-+.+||.-|.+.-+...+| .+.+||+.+..+.- .......-.+++|||-...|+.+.-
T Consensus 165 qsvRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG------------ 228 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG------------ 228 (673)
T ss_pred CeEEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec------------
Confidence 34567899999999988877665 69999998765432 1122222268999998876665542
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
...+|+.++++.....+.++++.| +..++|+++|.+|+.- ....+|+.||+..
T Consensus 229 ---~Dkki~~yD~~s~~s~~~l~y~~P-----lstvaf~~~G~~L~aG----~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 229 ---YDKKINIYDIRSQASTDRLTYSHP-----LSTVAFSECGTYLCAG----NSKGELIAYDMRS 281 (673)
T ss_pred ---ccceEEEeecccccccceeeecCC-----cceeeecCCceEEEee----cCCceEEEEeccc
Confidence 334899999998887788887754 3468999999999853 3336899999987
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.025 Score=64.74 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=102.1
Q ss_pred cEEEeeEEeCCCCc-EEEEEEeCCCCceEEEEEEECCCCCcccccc----cccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 141 TTALKLYAFSDNGK-HFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL----KNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 141 ~~~~~~~~~SPDG~-~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
+..|.++.|+|.+. .|| +|....+|++||+..=+ .+-+. ....+..++|...-..|+-.....
T Consensus 116 ~G~V~gLDfN~~q~nlLA-----SGa~~geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------ 183 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLA-----SGADDGEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------ 183 (1049)
T ss_pred CCceeeeeccccCCceee-----ccCCCCcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhhHHhhccCCC------
Confidence 55688899999988 777 45556789999987522 11111 111235678866665665544321
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.+.-+||+.... .++-+...........+.|.||+..-+++++......-|-+||+.- . ..+
T Consensus 184 ---------g~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~-a------ssP 245 (1049)
T KOG0307|consen 184 ---------GRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF-A------SSP 245 (1049)
T ss_pred ---------CCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc-c------CCc
Confidence 245667776542 2222222222234567999999987776666545557888899765 1 134
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
.+.+..+..+.... |.+.+.++++.+.+ +.+++.++.++++
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgk---D~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGK---DNRIICWNPNTGE 287 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccC---CCCeeEecCCCce
Confidence 44443444444444 88888778876654 4579999998865
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.19 Score=51.86 Aligned_cols=202 Identities=13% Similarity=0.182 Sum_probs=114.3
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc----c-cccc---cccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD----Y-PEVL---KNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~----~-~~~~---~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
+++|++.-.-...+ +++..+|.+||+..... + +.+. ....+...+|.|-.+.+|-...++
T Consensus 182 glsWn~~~~g~Lls----~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd-------- 249 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLS----GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD-------- 249 (422)
T ss_pred ccccccccceeEee----ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC--------
Confidence 46777765543333 33446799999875332 1 1111 111235678988777776554432
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
..|.+|++.+.+.+ .......+..-+..++|+|=+.+|+.+.+. .+.|.+||+.... .++.
T Consensus 250 -------~~L~iwD~R~~~~~--~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~---D~tV~LwDlRnL~-------~~lh 310 (422)
T KOG0264|consen 250 -------GKLMIWDTRSNTSK--PSHSVKAHSAEVNCVAFNPFNEFILATGSA---DKTVALWDLRNLN-------KPLH 310 (422)
T ss_pred -------CeEEEEEcCCCCCC--CcccccccCCceeEEEeCCCCCceEEeccC---CCcEEEeechhcc-------cCce
Confidence 37889998863211 111122233345678999999888866542 3689999998721 2344
Q ss_pred eeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC---------CceEeecCC-CCceeEEEEEee-CCE
Q psy4818 298 TVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK---------NWKTLIPED-ENRTLDVVAAVA-NNK 365 (734)
Q Consensus 298 ~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---------~~~~l~~~~-~~~~~~~~~~~~-~~~ 365 (734)
.+.........+ |||+.+.++..+. .+.+|.+||+..-... ....++.+. ....+..+.|.. ...
T Consensus 311 ~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 311 TFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred eccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 444555555666 9999888876654 3567999998642211 112223222 222234444433 245
Q ss_pred EEEEEEeCCceeEEEEEC
Q psy4818 366 LIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 366 l~~~~~~~~~~~l~~~dl 383 (734)
++.+..++ ..|.+|..
T Consensus 388 ~I~SvaeD--N~LqIW~~ 403 (422)
T KOG0264|consen 388 TIASVAED--NILQIWQM 403 (422)
T ss_pred EEEEecCC--ceEEEeec
Confidence 66666666 45556655
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.86 Score=43.76 Aligned_cols=204 Identities=10% Similarity=0.099 Sum_probs=113.1
Q ss_pred CeeEEEc--CCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC-CCeeEEecCCCCeeEEEEEEecCCcEEEEE
Q psy4818 191 PSISWTH--DHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD-KDIPVVEFPNGRSLGLHSEVTDCGRYLLVS 267 (734)
Q Consensus 191 ~~~~wSp--Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~-~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~ 267 (734)
.++.||| ++ +|+..+...- -.....+|+++++..++. ....-|+..+ -.++++||+.-..+++.
T Consensus 12 ysvqfSPf~~n-rLavAt~q~y---------Gl~G~G~L~ile~~~~~gi~e~~s~d~~D---~LfdV~Wse~~e~~~~~ 78 (311)
T KOG0277|consen 12 YSVQFSPFVEN-RLAVATAQHY---------GLAGNGRLFILEVTDPKGIQECQSYDTED---GLFDVAWSENHENQVIA 78 (311)
T ss_pred ceeEecccccc-hhheeehhhc---------ccccCceEEEEecCCCCCeEEEEeeeccc---ceeEeeecCCCcceEEE
Confidence 4677777 33 4554442110 123455899999863332 2122233222 34589999999888887
Q ss_pred EecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEe
Q psy4818 268 TSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 346 (734)
Q Consensus 268 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 346 (734)
.... ..+.++|+.- + ..|......+....+.. |.+-.++.++++.- +..|-+++..-+. .+...
T Consensus 79 a~GD---GSLrl~d~~~-~------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW---D~TiKLW~~~r~~--Sv~Tf 143 (311)
T KOG0277|consen 79 ASGD---GSLRLFDLTM-P------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW---DGTIKLWDPNRPN--SVQTF 143 (311)
T ss_pred EecC---ceEEEeccCC-C------CcchhHHHhhhhheEEeccccccceeEEeecc---CCceEeecCCCCc--ceEee
Confidence 6532 4678888544 2 23444343444455554 66655666666533 3346666654333 23443
Q ss_pred ecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECC-CCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEE
Q psy4818 347 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLN-TGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIY 425 (734)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~-~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~ 425 (734)
. +....+++..+.+....++.+.+.++ .+.+||+. .|+.+ .|..+...+....++.-...++++.... ..++
T Consensus 144 ~-gh~~~Iy~a~~sp~~~nlfas~Sgd~--~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd---~~vr 216 (311)
T KOG0277|consen 144 N-GHNSCIYQAAFSPHIPNLFASASGDG--TLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVD---NLVR 216 (311)
T ss_pred c-CCccEEEEEecCCCCCCeEEEccCCc--eEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCC---ceEE
Confidence 3 33345556555555456777776664 56666663 46653 3655555555666665555666655443 3688
Q ss_pred EEeC
Q psy4818 426 HCNI 429 (734)
Q Consensus 426 ~~d~ 429 (734)
.+|+
T Consensus 217 ~wDi 220 (311)
T KOG0277|consen 217 GWDI 220 (311)
T ss_pred EEeh
Confidence 8888
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.34 Score=47.82 Aligned_cols=208 Identities=11% Similarity=0.067 Sum_probs=100.4
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
+++++|.||.+.|+.+.+.. ..|+.++++ |+.+.. ...+ .+.-++++.-+++ ++ .+.
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~----~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~v-l~~-------------- 82 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP----GEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YV-LSE-------------- 82 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EE-EEE--------------
T ss_pred ccccEEcCCCCeEEEEECCC----CEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EE-EEE--------------
Confidence 89999999999888777654 368899975 565432 2222 2346788876663 32 232
Q ss_pred cCCcEEEEEECCCCCCC-Ce---eEEe--cC-CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCC-cccCC
Q psy4818 222 HMGQKIYYHVLGTEQDK-DI---PVVE--FP-NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG-KISGK 293 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~-~~---~v~~--~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 293 (734)
.+.++|+.+.++..... +. .-+. .. .+..-+.+++|+|.++.+++...+ ....||-++....... .+...
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccc
Confidence 22447888877443211 11 1111 11 112235789999998888766432 3357888876220000 00000
Q ss_pred CCcee-eeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-----CCceeEEEEEeeCCEEE
Q psy4818 294 FPLKT-VIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-----ENRTLDVVAAVANNKLI 367 (734)
Q Consensus 294 ~~~~~-l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~l~ 367 (734)
..+.. ...-.+...-.+.|..+.||+++... ..|..+|.++.. .....|.... .-...+++.+.+++.||
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es---~~l~~~d~~G~~-~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDES---RLLLELDRQGRV-VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTT---TEEEEE-TT--E-EEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCC---CeEEEECCCCCE-EEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 00000 00000111112678888999998863 468888865532 1122233321 01235677777767888
Q ss_pred EEEEeCCceeEEEE
Q psy4818 368 VHYIQNVRSVMDLH 381 (734)
Q Consensus 368 ~~~~~~~~~~l~~~ 381 (734)
++... +.+|++
T Consensus 237 IvsEp---Nlfy~f 247 (248)
T PF06977_consen 237 IVSEP---NLFYRF 247 (248)
T ss_dssp EEETT---TEEEEE
T ss_pred EEcCC---ceEEEe
Confidence 77643 356655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2931|consensus | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.39 Score=47.32 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=81.0
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc---CCccc-cHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS---VLPTF-SISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~---~~~~~-~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
+++..+.+.-|. |++.++-- +++++|+||..|.-.-.. ....| .+.++.++. .|.|.-++.+|.-.--.
T Consensus 22 ~~e~~V~T~~G~-v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~--~fcv~HV~~PGqe~gAp 94 (326)
T KOG2931|consen 22 CQEHDVETAHGV-VHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILE--HFCVYHVDAPGQEDGAP 94 (326)
T ss_pred ceeeeecccccc-EEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHh--heEEEecCCCccccCCc
Confidence 444445555563 77777642 234788899988742221 22223 234455544 39999999998432111
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.+. ...---+.+|+.+.+-.+.+. ..-+.|..+|--+|+++-.+.|..+|++.-+.|+..+
T Consensus 95 ~~p----~~y~yPsmd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~ 155 (326)
T KOG2931|consen 95 SFP----EGYPYPSMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINC 155 (326)
T ss_pred cCC----CCCCCCCHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEec
Confidence 111 111123456666666666554 2335689999999999999999999999999998765
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.3 Score=51.62 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=67.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.++..+.|-|-++.+.......|. +|++|.. ...+.......--+++..+.....-.. .
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGn----lyly~~~-------~~~~~t~p~~~~~k~~~~f~i~t~ksk----------~ 278 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGN----LYLYDKE-------IVCGATAPSYQALKDGDQFAILTSKSK----------K 278 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCc----eEEeecc-------ccccCCCCcccccCCCCeeEEeeeecc----------c
Confidence 456677888776666555555553 7777751 111111111222356665555433110 0
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
.+ .-+.+|.++.+ -+..++|||||++||.++.+ .-|.++|..+ ..+..+..
T Consensus 279 ~r-NPv~~w~~~~g---------------~in~f~FS~DG~~LA~VSqD----GfLRvF~fdt---------~eLlg~mk 329 (636)
T KOG2394|consen 279 TR-NPVARWHIGEG---------------SINEFAFSPDGKYLATVSQD----GFLRIFDFDT---------QELLGVMK 329 (636)
T ss_pred cC-CccceeEeccc---------------cccceeEcCCCceEEEEecC----ceEEEeeccH---------HHHHHHHH
Confidence 11 22444444433 12357899999999987654 3577777776 11222222
Q ss_pred cccce-EEE-EEecCCeEEE
Q psy4818 302 GMDHH-HEI-IANNGPELIV 319 (734)
Q Consensus 302 ~~~~~-~~~-~s~dg~~l~~ 319 (734)
..-.+ ..+ |||||++|+.
T Consensus 330 SYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred hhccceEEEEEcCCccEEEe
Confidence 22222 334 9999998774
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.49 Score=52.49 Aligned_cols=230 Identities=10% Similarity=0.069 Sum_probs=121.4
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
...+..+.+.- |..+.++- +...+++|||..+|+.+....+... ..-.-+-+. .+....
T Consensus 249 ~g~V~~l~~~~-~~~~lvsg----S~D~t~rvWd~~sg~C~~~l~gh~s-tv~~~~~~~-~~~~sg-------------- 307 (537)
T KOG0274|consen 249 FGGVWGLAFPS-GGDKLVSG----STDKTERVWDCSTGECTHSLQGHTS-SVRCLTIDP-FLLVSG-------------- 307 (537)
T ss_pred CCCceeEEEec-CCCEEEEE----ecCCcEEeEecCCCcEEEEecCCCc-eEEEEEccC-ceEeec--------------
Confidence 34455566555 33344433 3346899999999997543332221 222222222 222221
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.+...|.+|++.++. .+.++... ...+..+..+ +..++-.+. ...|.+||..++ ..+..+.
T Consensus 308 -s~D~tVkVW~v~n~~--~l~l~~~h--~~~V~~v~~~--~~~lvsgs~----d~~v~VW~~~~~--------~cl~sl~ 368 (537)
T KOG0274|consen 308 -SRDNTVKVWDVTNGA--CLNLLRGH--TGPVNCVQLD--EPLLVSGSY----DGTVKVWDPRTG--------KCLKSLS 368 (537)
T ss_pred -cCCceEEEEeccCcc--eEEEeccc--cccEEEEEec--CCEEEEEec----CceEEEEEhhhc--------eeeeeec
Confidence 133478999988653 44444432 2233344443 666653322 247888998873 1223333
Q ss_pred ccccceEEEEEecC-CeEEEEeCCCCCCceEEEEecCCC-CCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeE
Q psy4818 301 PGMDHHHEIIANNG-PELIVKTTKNAPKGKVVTINLNNP-CEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378 (734)
Q Consensus 301 ~~~~~~~~~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 378 (734)
.+....+. +..++ ..++ .+.. +..|..||+.++ . ....+.+. ...+...... +.+++....+ ..|
T Consensus 369 gH~~~V~s-l~~~~~~~~~-Sgs~---D~~IkvWdl~~~~~---c~~tl~~h-~~~v~~l~~~--~~~Lvs~~aD--~~I 435 (537)
T KOG0274|consen 369 GHTGRVYS-LIVDSENRLL-SGSL---DTTIKVWDLRTKRK---CIHTLQGH-TSLVSSLLLR--DNFLVSSSAD--GTI 435 (537)
T ss_pred CCcceEEE-EEecCcceEE-eeee---ccceEeecCCchhh---hhhhhcCC-cccccccccc--cceeEecccc--ccE
Confidence 32222222 34444 4444 3222 355999999876 3 23333332 2333333322 3455555544 489
Q ss_pred EEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 379 DLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 379 ~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+||.++++.++.+..+ .+.+..+... +..++..+. ...+.++|+
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~---~~~~~l~dl 481 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSD---DGSVKLWDL 481 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecC---cceEEEEec---CCeeEEEec
Confidence 99999999988888774 5667666544 334444333 346788898
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.12 Score=52.56 Aligned_cols=219 Identities=13% Similarity=0.120 Sum_probs=111.8
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+....+-+|++.+.-.... ..+++|++..++.+. .+..........+.-+..+++-.+.
T Consensus 221 ~it~~d~d~~~~~~iAas~d-----~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~-------------- 281 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASND-----KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA-------------- 281 (459)
T ss_pred CcceeeecCCCceEEeecCC-----Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccc--------------
Confidence 36678899999986644322 468899998876432 2222222345555554444322222
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
..+|..|++....-....+.....+ ++..+ -..+++ .+.+ ..|..||..+.. ....+.
T Consensus 282 --DRtiK~WDl~k~~C~kt~l~~S~cn-----DI~~~---~~~~~S--gH~D-kkvRfwD~Rs~~---------~~~sv~ 339 (459)
T KOG0288|consen 282 --DRTIKLWDLQKAYCSKTVLPGSQCN-----DIVCS---ISDVIS--GHFD-KKVRFWDIRSAD---------KTRSVP 339 (459)
T ss_pred --cchhhhhhhhhhheecccccccccc-----ceEec---ceeeee--cccc-cceEEEeccCCc---------eeeEee
Confidence 2356666665433222122221111 22332 122222 2222 568999977621 111111
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC----CceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE----NRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
........ .+++|..+.-.+.. ..|-++|+.+.+ +...+.... .+.-..++.++ +..++..+.+ .
T Consensus 340 ~gg~vtSl~ls~~g~~lLsssRD----dtl~viDlRt~e---I~~~~sA~g~k~asDwtrvvfSpd-~~YvaAGS~d--g 409 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELLSSSRD----DTLKVIDLRTKE---IRQTFSAEGFKCASDWTRVVFSPD-GSYVAAGSAD--G 409 (459)
T ss_pred cCcceeeEeeccCCeEEeeecCC----Cceeeeeccccc---EEEEeeccccccccccceeEECCC-CceeeeccCC--C
Confidence 11122222 77888777654332 347778887755 232222210 11112233344 5555555444 4
Q ss_pred eEEEEECCCCceeeeeCCC--CceEEeeccCcccceEE
Q psy4818 377 VMDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVF 412 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~ 412 (734)
.||+|++.+|+....+..+ ...|.++++++.|..++
T Consensus 410 sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 410 SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 7999999999877777655 22477788877665443
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.017 Score=63.73 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=48.7
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEec
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCD 209 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~ 209 (734)
+...+..+.||||||+|+-+..+ ..|++||+.+|..+.-..-.....++.+||.|+.|+-+..+.
T Consensus 575 h~nritd~~FS~DgrWlisasmD-----~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMD-----STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecC-----CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecC
Confidence 34568899999999999976642 479999999998654222222226789999999999887653
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.09 Score=52.20 Aligned_cols=192 Identities=17% Similarity=0.175 Sum_probs=106.5
Q ss_pred cCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCce
Q psy4818 197 HDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD 276 (734)
Q Consensus 197 pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 276 (734)
-..|.+|....++.. .....+...|.+|+..+-.-..+ + ..+.+.+. ..--|.+. +++ ++..+.
T Consensus 195 e~skgVYClQYDD~k------iVSGlrDnTikiWD~n~~~c~~~-L---~GHtGSVL--CLqyd~rv-iis---GSSDsT 258 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDEK------IVSGLRDNTIKIWDKNSLECLKI-L---TGHTGSVL--CLQYDERV-IVS---GSSDST 258 (499)
T ss_pred ccCCceEEEEecchh------hhcccccCceEEeccccHHHHHh-h---hcCCCcEE--eeeccceE-EEe---cCCCce
Confidence 356777777765420 11123445677777654321111 1 12233333 33346663 333 234478
Q ss_pred EEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCcee
Q psy4818 277 LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTL 355 (734)
Q Consensus 277 i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 355 (734)
|.+||..+| .++..++.+-+..... |+ + . +.+.+.+ +..+.+||++++....+..++-+. ...+
T Consensus 259 vrvWDv~tg--------e~l~tlihHceaVLhlrf~-n-g-~mvtcSk---DrsiaVWdm~sps~it~rrVLvGH-rAaV 323 (499)
T KOG0281|consen 259 VRVWDVNTG--------EPLNTLIHHCEAVLHLRFS-N-G-YMVTCSK---DRSIAVWDMASPTDITLRRVLVGH-RAAV 323 (499)
T ss_pred EEEEeccCC--------chhhHHhhhcceeEEEEEe-C-C-EEEEecC---CceeEEEeccCchHHHHHHHHhhh-hhhe
Confidence 999999984 2344455444444333 43 2 2 3334433 345778888765432333344333 3445
Q ss_pred EEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 356 DVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+.+. ++++++++.+ ..|.+|+..+++.++.|......|..+.. .++++++.||.. .+.++|+
T Consensus 324 NvVdfd--~kyIVsASgD--RTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDn---tIRlwdi 387 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSASGD--RTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDN---TIRLWDI 387 (499)
T ss_pred eeeccc--cceEEEecCC--ceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCc---eEEEEec
Confidence 555443 3455555433 67999999999988888776444534332 357888888876 5888888
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.065 Score=54.50 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=61.8
Q ss_pred EEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCC
Q psy4818 168 NTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPN 247 (734)
Q Consensus 168 ~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~ 247 (734)
..|+.||..++..+.....+....++.-|+||..|.-...++ .+-++++.+... +..|....
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd----------------tl~viDlRt~eI--~~~~sA~g 383 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD----------------TLKVIDLRTKEI--RQTFSAEG 383 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC----------------ceeeeecccccE--EEEeeccc
Confidence 468999988877655444344568899999999888765433 466666665432 22332211
Q ss_pred --CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 248 --GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 248 --~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
.......+.|||||+|++- ++....||+|++.++
T Consensus 384 ~k~asDwtrvvfSpd~~YvaA----GS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAA----GSADGSVYIWSVFTG 419 (459)
T ss_pred cccccccceeEECCCCceeee----ccCCCcEEEEEccCc
Confidence 0111345789999999983 333468999999884
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.16 Score=49.20 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=95.7
Q ss_pred EEEEecCCCCCcCCcccc-HHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCC
Q psy4818 490 VIIYGYGGYGVSVLPTFS-ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPK 568 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~-~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 568 (734)
.||++-||......|... ..+++.|+++||+|++.-|.-+ + +..... ....+.+..|++.|.+++..++.
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~t--f--DH~~~A-----~~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVT--F--DHQAIA-----REVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCC--C--cHHHHH-----HHHHHHHHHHHHHHHHhcCCCcc
Confidence 677777775544444322 2356777788999999988632 2 111111 12345677788888776544443
Q ss_pred --cEEEEEcChHHHHHHHHHhcCCCceeEEEEcC----CcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCC
Q psy4818 569 --YITIMGGSNGGLLVGACLNQRPELYGAALILV----GALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNI 642 (734)
Q Consensus 569 --ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~----~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~ 642 (734)
.+.-+|||+|..+-+.+....+..-++-|+.+ |..+.+-+.. ........|| .|.-.|....++++ ..+
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFNN~~a~~aIP~~~-~l~~~l~~EF-~PsP~ET~~li~~~---Y~~ 163 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFNNFPADEAIPLLE-QLAPALRLEF-TPSPEETRRLIRES---YQV 163 (250)
T ss_pred cCCeeeeecccchHHHHHHhhhccCcccceEEEecCChHHHhhCchHh-hhccccccCc-cCCHHHHHHHHHHh---cCC
Confidence 56779999999998887765432213222211 1111111100 0011111222 23323333333332 234
Q ss_pred CCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCC
Q psy4818 643 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702 (734)
Q Consensus 643 ~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~ 702 (734)
+. .|++.=.+|. ..|+..+.+.|+... ..-+....-+ +.|.
T Consensus 164 ~r---------nLLIkF~~D~---iDqt~~L~~~L~~r~------~~~~~~~~L~-G~HL 204 (250)
T PF07082_consen 164 RR---------NLLIKFNDDD---IDQTDELEQILQQRF------PDMVSIQTLP-GNHL 204 (250)
T ss_pred cc---------ceEEEecCCC---ccchHHHHHHHhhhc------cccceEEeCC-CCCC
Confidence 33 6667666675 479999999998762 1124445555 5774
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.6 Score=42.77 Aligned_cols=214 Identities=13% Similarity=0.081 Sum_probs=105.3
Q ss_pred CeeEEEcCCc-EEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 191 PSISWTHDHK-GFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 191 ~~~~wSpDg~-~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
.+++++|-.+ .++|.+.+. ...++.+..+.+...+ .....+..|+..-.|||||++|+-+.+
T Consensus 71 Hgi~~~p~~~ravafARrPG---------------tf~~vfD~~~~~~pv~--~~s~~~RHfyGHGvfs~dG~~LYATEn 133 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPG---------------TFAMVFDPNGAQEPVT--LVSQEGRHFYGHGVFSPDGRLLYATEN 133 (366)
T ss_pred CCeecCCCCcceEEEEecCC---------------ceEEEECCCCCcCcEE--EecccCceeecccccCCCCcEEEeecC
Confidence 4566777544 566666533 1345556655543322 222334557777889999999987765
Q ss_pred cCCC-CceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCC--CC------------CCceEEEEe
Q psy4818 270 NNTQ-GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTK--NA------------PKGKVVTIN 334 (734)
Q Consensus 270 ~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~--~~------------~~~~l~~~d 334 (734)
.-.. ..-|-++|...+-. . ...+. +-+.....-.|.+||+.+++...- .. -.-.|.++|
T Consensus 134 dfd~~rGViGvYd~r~~fq-r---vgE~~--t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld 207 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQ-R---VGEFS--THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD 207 (366)
T ss_pred CCCCCCceEEEEecccccc-e---ecccc--cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence 4322 25677888765211 0 01111 111122222389999987765320 11 112466666
Q ss_pred cCCCCCCCceEeecCC-CCceeEEEEEeeCCEEEEEEEeCCc----eeEEEEECCCCceeeeeCCCC-------ceEEee
Q psy4818 335 LNNPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQNVR----SVMDLHDLNTGKRLHSFPLDL-------GQITHI 402 (734)
Q Consensus 335 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~----~~l~~~dl~~g~~~~~l~~~~-------g~v~~~ 402 (734)
..+++.-+ +..++.. ..-.+.-+....++.+++.....|. +-|.-.-. .|+.++.+..+. ..+.++
T Consensus 208 ~atG~lie-kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~-~g~~l~~~~~pee~~~~~anYigsi 285 (366)
T COG3490 208 AATGNLIE-KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR-KGEPLEFLDLPEEQTAAFANYIGSI 285 (366)
T ss_pred ccccchhh-hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc-CCCcCcccCCCHHHHHHHHhhhhhe
Confidence 44443100 1222321 1223344555555677765543332 33443323 356556665541 123344
Q ss_pred ccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 403 SGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 403 ~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
..+.+...+. .+|+. -....++|. ++|
T Consensus 286 A~n~~~glV~--lTSP~-GN~~vi~da-----~tG 312 (366)
T COG3490 286 AANRRDGLVA--LTSPR-GNRAVIWDA-----ATG 312 (366)
T ss_pred eecccCCeEE--EecCC-CCeEEEEEc-----CCC
Confidence 4443333333 33432 235788998 677
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.65 Score=50.35 Aligned_cols=277 Identities=9% Similarity=0.121 Sum_probs=135.0
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc---c--ccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY---P--EVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~---~--~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
....++.+.+-.|+.. ....|++|++..-... + ... .......++-.-+|+.|.-++.|.
T Consensus 29 ~Lq~da~~~ryLfTgG----RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt--------- 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGG----RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT--------- 95 (735)
T ss_pred hccccCCCCceEEecC----CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc---------
Confidence 4455655555445443 3357999987543211 1 011 111124455566788777776543
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC---CCC
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG---KFP 295 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~---~~~ 295 (734)
.|.+|+......- ..-....+..|+-.+++-...+.++.+ ++-..+|++||+.++.. .++. ..+
T Consensus 96 -------TVK~W~~~~~~~~--c~stir~H~DYVkcla~~ak~~~lvaS---gGLD~~IflWDin~~~~-~l~~s~n~~t 162 (735)
T KOG0308|consen 96 -------TVKVWNAHKDNTF--CMSTIRTHKDYVKCLAYIAKNNELVAS---GGLDRKIFLWDINTGTA-TLVASFNNVT 162 (735)
T ss_pred -------eEEEeecccCcch--hHhhhhcccchheeeeecccCceeEEe---cCCCccEEEEEccCcch-hhhhhccccc
Confidence 5666665443211 111112233466666662333333332 23337999999998533 1111 011
Q ss_pred ceeee-ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC
Q psy4818 296 LKTVI-PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 296 ~~~l~-~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
...+. ......|..-..+...++ ++. +....|..||..+.+ +...|..+. ..+..+...+++.-+++++.+|
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~i-vsG--gtek~lr~wDprt~~--kimkLrGHT--dNVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTII-VSG--GTEKDLRLWDPRTCK--KIMKLRGHT--DNVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred cccCCCCCccceeeeecCCcceEE-Eec--CcccceEEecccccc--ceeeeeccc--cceEEEEEcCCCCeEeecCCCc
Confidence 11122 222233332222222233 222 234568889987765 234555444 4455565665566666776664
Q ss_pred ceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFE 453 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (734)
.|.+|||..-+.+..+..+ .+ +-++..+++-+.++ ++. .-..+|+-|+ .+.. +.+++-..+-|-.
T Consensus 236 --tIrlWdLgqQrCl~T~~vH~e~-VWaL~~~~sf~~vY---sG~-rd~~i~~Tdl-----~n~~-~~tlick~daPv~- 301 (735)
T KOG0308|consen 236 --TIRLWDLGQQRCLATYIVHKEG-VWALQSSPSFTHVY---SGG-RDGNIYRTDL-----RNPA-KSTLICKEDAPVL- 301 (735)
T ss_pred --eEEeeeccccceeeeEEeccCc-eEEEeeCCCcceEE---ecC-CCCcEEeccc-----CCch-hheEeecCCCchh-
Confidence 7899999433444455445 44 43555555444443 322 2356899998 3421 4455444332211
Q ss_pred CCCc--eEEEEEEEcCCC
Q psy4818 454 PTLF--QTKQVYFRSKDG 469 (734)
Q Consensus 454 ~~~~--~~~~~~~~s~dg 469 (734)
.-.+ .-+.+|+.+.|+
T Consensus 302 ~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 302 KLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred hhhhccccCCceeeeccc
Confidence 1111 124457777666
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.031 Score=55.38 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC-ceeEEEEc
Q psy4818 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE-LYGAALIL 599 (734)
Q Consensus 555 ~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~ 599 (734)
+.+.|.+..... +-+-++|+|.||.+.=+++.+.|+ .++-.|+.
T Consensus 68 vc~~l~~~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISl 112 (279)
T PF02089_consen 68 VCEQLANDPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISL 112 (279)
T ss_dssp HHHHHHH-GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEE
T ss_pred HHHHHhhChhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEe
Confidence 444444432222 468999999999999999988765 34555553
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >KOG2237|consensus | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.011 Score=63.86 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=75.3
Q ss_pred eEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCc-EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc
Q psy4818 102 NYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGT-TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 180 (734)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~-~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~ 180 (734)
+..|.|+...++..+++--...+...+++||.|++++++. +..+-...|||.++|||..+..|++.+++ |.++....+
T Consensus 97 ~vl~~rr~~~~e~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~ 175 (712)
T KOG2237|consen 97 YVLYCRRLLEKEEEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTV-VIDVKFSGP 175 (712)
T ss_pred hhHHHHhhhhcccceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCcccee-eeeeccCCc
Confidence 3344444332333333333334556779999999998854 55555669999999999999999999999 999988876
Q ss_pred ccccccccccCeeEEEc-CCcEEEEEEEecC
Q psy4818 181 YPEVLKNVKFPSISWTH-DHKGFFYNQYCDI 210 (734)
Q Consensus 181 ~~~~~~~~~~~~~~wSp-Dg~~l~y~~~~~~ 210 (734)
...... -.++..+|.. ||+.|.|...++.
T Consensus 176 ~~~~~~-~g~~y~~w~~~dg~~l~~~t~~~~ 205 (712)
T KOG2237|consen 176 VWTHDG-KGVSYLAWAKQDGEDLLYGTEDEN 205 (712)
T ss_pred eeeccC-CceEeeeecccCCceeeeeeeccc
Confidence 543222 2347889987 8998888877654
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.5 Score=44.06 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=102.0
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc----c-------------cc-ccc-ccCeeEEEcCCcE
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP----E-------------VL-KNV-KFPSISWTHDHKG 201 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~----~-------------~~-~~~-~~~~~~wSpDg~~ 201 (734)
..++.++.+|||++++ |+.+.+| +|--|++.+|+... . .. ... ..-.++-|+||++
T Consensus 142 ~~s~~~vals~d~~~~-fsask~g----~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRV-FSASKDG----TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred cCcceEEEeeccccce-eecCCCc----ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 4557789999999976 4444443 67777777776221 0 00 111 1235788999999
Q ss_pred EEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEe
Q psy4818 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFD 281 (734)
Q Consensus 202 l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d 281 (734)
|++...+ ..|.+|+..+... +..|. .+.+-+.+++|-..-..|+ +.+ ....+.+|+
T Consensus 217 latgg~d----------------~~v~Iw~~~t~eh--v~~~~--ghr~~V~~L~fr~gt~~ly-s~s---~Drsvkvw~ 272 (479)
T KOG0299|consen 217 LATGGRD----------------RHVQIWDCDTLEH--VKVFK--GHRGAVSSLAFRKGTSELY-SAS---ADRSVKVWS 272 (479)
T ss_pred EEecCCC----------------ceEEEecCcccch--hhccc--ccccceeeeeeecCcccee-eee---cCCceEEEe
Confidence 9886543 2577888877653 22332 2333455666644444443 222 124566676
Q ss_pred CCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE
Q psy4818 282 LHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA 360 (734)
Q Consensus 282 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~ 360 (734)
++.. .....+..+....... .... .+.+-+..+ +..+.+|.+.... +.+..+. ...++.+.+
T Consensus 273 ~~~~--------s~vetlyGHqd~v~~IdaL~r-eR~vtVGgr---DrT~rlwKi~ees----qlifrg~-~~sidcv~~ 335 (479)
T KOG0299|consen 273 IDQL--------SYVETLYGHQDGVLGIDALSR-ERCVTVGGR---DRTVRLWKIPEES----QLIFRGG-EGSIDCVAF 335 (479)
T ss_pred hhHh--------HHHHHHhCCccceeeechhcc-cceEEeccc---cceeEEEeccccc----eeeeeCC-CCCeeeEEE
Confidence 6551 1122233322222221 1122 233333223 2345555553221 3344443 445666666
Q ss_pred eeCCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 361 VANNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 361 ~~~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
.++.++ ++.+.+ ..|++|++...+.
T Consensus 336 In~~Hf-vsGSdn--G~IaLWs~~KKkp 360 (479)
T KOG0299|consen 336 INDEHF-VSGSDN--GSIALWSLLKKKP 360 (479)
T ss_pred ecccce-eeccCC--ceEEEeeecccCc
Confidence 664554 445455 3788998854443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.54 Score=46.42 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=95.7
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
.++++|.||+++|+.+.+. +..|+..+..+.. -...-+.. .+-..++++.-+|++++. .
T Consensus 24 ~SGLTy~pd~~tLfaV~d~---------------~~~i~els~~G~v-lr~i~l~g---~~D~EgI~y~g~~~~vl~-~- 82 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDE---------------PGEIYELSLDGKV-LRRIPLDG---FGDYEGITYLGNGRYVLS-E- 82 (248)
T ss_dssp EEEEEEETTTTEEEEEETT---------------TTEEEEEETT--E-EEEEE-SS----SSEEEEEE-STTEEEEE-E-
T ss_pred ccccEEcCCCCeEEEEECC---------------CCEEEEEcCCCCE-EEEEeCCC---CCCceeEEEECCCEEEEE-E-
Confidence 3899999999999887742 3468777764321 11111221 223467889888877653 2
Q ss_pred cCCCCceEEEEeCCCCCCCcccCCCCceeee---c-cccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCc
Q psy4818 270 NNTQGSDLHYFDLHSLPDGKISGKFPLKTVI---P-GMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNW 343 (734)
Q Consensus 270 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~---~-~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 343 (734)
.....|+++++.. .+..+.. ...+.+. . ..+.+.. .|++.+++|++...+ .+ ..||.++...... ..
T Consensus 83 --Er~~~L~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P-~~l~~~~~~~~~~-~~ 155 (248)
T PF06977_consen 83 --ERDQRLYIFTIDD-DTTSLDR-ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KP-KRLYEVNGFPGGF-DL 155 (248)
T ss_dssp --TTTTEEEEEEE-----TT--E-EEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SS-EEEEEEESTT-SS---
T ss_pred --cCCCcEEEEEEec-cccccch-hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CC-hhhEEEccccCcc-ce
Confidence 1225788887744 1111110 0111111 1 1222333 388998999987654 23 4588887621110 01
Q ss_pred eEee----c--CCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCC---------ceEEeeccCcc
Q psy4818 344 KTLI----P--EDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDL---------GQITHISGRRK 407 (734)
Q Consensus 344 ~~l~----~--~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~---------g~v~~~~~~~d 407 (734)
.... . ...-..++++... ..+++++.+.+. ..|..+|. +|+.+..+.+.. -...+++++++
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es--~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES--RLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT--TEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred eeccccccccccceeccccceEEcCCCCeEEEEECCC--CeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 1100 0 0001123344433 235777775443 57888886 787655544332 13456777777
Q ss_pred cceEEEEEecCCCCceEEEE
Q psy4818 408 YNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 408 ~~~l~~~~ss~~~P~~~~~~ 427 (734)
| .++++. .|...|++
T Consensus 233 G-~LYIvs----EpNlfy~f 247 (248)
T PF06977_consen 233 G-NLYIVS----EPNLFYRF 247 (248)
T ss_dssp ---EEEEE----TTTEEEEE
T ss_pred C-CEEEEc----CCceEEEe
Confidence 6 566653 26677765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.45 Score=47.03 Aligned_cols=155 Identities=13% Similarity=0.184 Sum_probs=84.8
Q ss_pred CeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCC
Q psy4818 249 RSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPK 327 (734)
Q Consensus 249 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~ 327 (734)
..-+..++||.|||+|+-... ...|.+|++.+...+. ..-.+.-+ ..+.... .|+||-+.+++...+ +.
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~----Dr~Ir~w~~~DF~~~e---Hr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~-g~- 155 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISG----DRSIRLWDVRDFENKE---HRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKR-GN- 155 (420)
T ss_pred CCceeeeEEcCCCceeEEEeC----CceEEEEecchhhhhh---hhHhhccc-cCCCceEEEECCCcceEEEEEcc-CC-
Confidence 335678999999999985432 2578889887732211 11111111 1111122 389998888776653 22
Q ss_pred ceEEEEecCCCCCCCc-eEeecCC-------CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceE
Q psy4818 328 GKVVTINLNNPCEKNW-KTLIPED-------ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQI 399 (734)
Q Consensus 328 ~~l~~~d~~~~~~~~~-~~l~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v 399 (734)
+|+.+-+........ ...++.+ ....+..+...++..++.+...+ ..|.+|+++ |+.+..|.......
T Consensus 156 -~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d--t~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 156 -KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD--TKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred -EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC--CcEEEEecC-Cceeeeeccccccc
Confidence 355544432110000 0111111 11223345555655666666555 579999996 98888887654444
Q ss_pred EeeccCcccceEEEEEecCC
Q psy4818 400 THISGRRKYNEVFYGFTSFL 419 (734)
Q Consensus 400 ~~~~~~~d~~~l~~~~ss~~ 419 (734)
....++|+|+.++. +.|+
T Consensus 232 ~~aavSP~GRFia~--~gFT 249 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAV--SGFT 249 (420)
T ss_pred cceeeCCCCcEEEE--ecCC
Confidence 45667899865543 4555
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.58 Score=49.00 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=108.1
Q ss_pred eEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 167 WNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
...+.+||+....+.....+.. .+..+.+.-...+|+-++. ...|-+|.+.+++.. ..|..
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~----------------gGdiiih~~~t~~~t--t~f~~ 161 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD----------------GGDIIIHGTKTKQKT--TTFTI 161 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc----------------CCcEEEEecccCccc--cceec
Confidence 3688999998543322111111 1122333333445555543 226888988887654 33443
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee-eeccccceEEE-EEecCCeEEEEeCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT-VIPGMDHHHEI-IANNGPELIVKTTK 323 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-l~~~~~~~~~~-~s~dg~~l~~~s~~ 323 (734)
+. .....-+.+||..|+++.+++. ...|.+||+.+. .+... ...+......+ |+|-...|++..
T Consensus 162 ~s-gqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~--------sp~~~~~~~HsAP~~gicfspsne~l~vsV-- 227 (673)
T KOG4378|consen 162 DS-GQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGM--------SPIFHASEAHSAPCRGICFSPSNEALLVSV-- 227 (673)
T ss_pred CC-CCeEEEeecccccceeeEeecc---CCeEEEEeccCC--------CcccchhhhccCCcCcceecCCccceEEEe--
Confidence 32 2244468899999999877654 357899999871 11111 11111111122 888777666543
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCc-eeeeeCCCCceEEee
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGK-RLHSFPLDLGQITHI 402 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~-~~~~l~~~~g~v~~~ 402 (734)
|.+-+|+.+|..... ....|+-+. .+..+.+.+++.+++..... .+|+.||+..-+ .+..+.....+|..+
T Consensus 228 -G~Dkki~~yD~~s~~--s~~~l~y~~---Plstvaf~~~G~~L~aG~s~--G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 228 -GYDKKINIYDIRSQA--STDRLTYSH---PLSTVAFSECGTYLCAGNSK--GELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred -cccceEEEeeccccc--ccceeeecC---CcceeeecCCceEEEeecCC--ceEEEEecccCCCCceEeeecccceeEE
Confidence 335689999986543 123444433 44556666656666665444 589999995333 223333334445555
Q ss_pred ccC
Q psy4818 403 SGR 405 (734)
Q Consensus 403 ~~~ 405 (734)
++.
T Consensus 300 afq 302 (673)
T KOG4378|consen 300 AFQ 302 (673)
T ss_pred Eee
Confidence 544
|
|
| >KOG1282|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.057 Score=57.79 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=86.4
Q ss_pred EEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHH----------------HHHHhcCeEEEEEe
Q psy4818 462 VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRC----------------MFLRHFNGIYAIPN 525 (734)
Q Consensus 462 ~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~----------------~~l~~~G~~v~~~~ 525 (734)
+.+....+..+..+++.... .....|+||++-||||.+...++..+.. .| .+ -..++..|
T Consensus 49 v~v~~~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySW-nk-~aNiLfLd 124 (454)
T KOG1282|consen 49 VTVNESEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSW-NK-EANILFLD 124 (454)
T ss_pred EECCCCCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccc-cc-cccEEEEe
Confidence 44444467788888877653 2456899999999999874333211110 12 11 23477778
Q ss_pred cccCCCCCchhhhccccccCCCchhHHHH-HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHH----hcC-----C-Ccee
Q psy4818 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQA-AAEYMINKKYTKPKYITIMGGSNGGLLVGACL----NQR-----P-ELYG 594 (734)
Q Consensus 526 ~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~----~~~-----p-~~~~ 594 (734)
.+-|.||.-.=...........+.+|... ..+|+.+...-..+.+.|.|.||+|..+-+++ ..+ | --++
T Consensus 125 ~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLk 204 (454)
T KOG1282|consen 125 QPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLK 204 (454)
T ss_pred cCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccce
Confidence 77766665221111111122334566654 46677766655666899999999996665554 322 2 2579
Q ss_pred EEEEcCCcchhcc
Q psy4818 595 AALILVGALDMLR 607 (734)
Q Consensus 595 a~v~~~~~~d~~~ 607 (734)
+++.+.|++|...
T Consensus 205 G~~IGNg~td~~~ 217 (454)
T KOG1282|consen 205 GYAIGNGLTDPEI 217 (454)
T ss_pred EEEecCcccCccc
Confidence 9999999988653
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.014 Score=49.08 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=43.3
Q ss_pred CcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 652 PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 652 P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+|+|+++++.|+..|+..++++.++|... .+++.++.||+.....+. -....+.+||.
T Consensus 35 ~piL~l~~~~Dp~TP~~~a~~~~~~l~~s-----------~lvt~~g~gHg~~~~~s~--C~~~~v~~yl~ 92 (103)
T PF08386_consen 35 PPILVLGGTHDPVTPYEGARAMAARLPGS-----------RLVTVDGAGHGVYAGGSP--CVDKAVDDYLL 92 (103)
T ss_pred CCEEEEecCcCCCCcHHHHHHHHHHCCCc-----------eEEEEeccCcceecCCCh--HHHHHHHHHHH
Confidence 45999999999999999999999888644 688899999997632221 22333556665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG3975|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.49 Score=45.42 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=66.0
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHH-hcC--eEEEEEecccCCCCCchhhhccccc-c
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLR-HFN--GIYAIPNIRGGGELGEDWHNAGRLL-K 544 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~-~~G--~~v~~~~~rG~~~~g~~~~~~~~~~-~ 544 (734)
|..+......|--.+.....|+|+++-|.||.. +|-..++..|. ..+ .-|..+-.-|+......-.++.... .
T Consensus 10 gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~---gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~ 86 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLL---GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNE 86 (301)
T ss_pred CCcccceeeeeeeccCCCCceEEEEecCCCCch---hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccc
Confidence 433444444444434457789999999887754 33333333222 222 1233333333322321212221111 1
Q ss_pred CCCchhHHHHH-HHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc--eeEEEEcCC
Q psy4818 545 KQNCFDDFQAA-AEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL--YGAALILVG 601 (734)
Q Consensus 545 ~~~~~~D~~~~-~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~--~~a~v~~~~ 601 (734)
....++|.+.- +.++ ++..-.-.||.++|||-|+|+++.++-..... ..-+++..|
T Consensus 87 eifsL~~QV~HKlaFi-k~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 87 EIFSLQDQVDHKLAFI-KEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred cccchhhHHHHHHHHH-HHhCCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 22345666554 4444 33334446999999999999999998633332 233444444
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.026 Score=54.42 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=44.5
Q ss_pred EEEecCCCCCcCCccccHHHHHHHHhcCeE---EEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 491 IIYGYGGYGVSVLPTFSISRCMFLRHFNGI---YAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 491 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
||++||-.+ .....|... .+.|.++||. |+..+|-..... ...... .........+.+.++.+.+ ++..
T Consensus 4 VVlVHG~~~-~~~~~w~~~-~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~--~~~~~~~~~l~~fI~~Vl~--~TGa 75 (219)
T PF01674_consen 4 VVLVHGTGG-NAYSNWSTL-APYLKAAGYCDSEVYALTYGSGNGS--PSVQNA--HMSCESAKQLRAFIDAVLA--YTGA 75 (219)
T ss_dssp EEEE--TTT-TTCGGCCHH-HHHHHHTT--CCCEEEE--S-CCHH--THHHHH--HB-HHHHHHHHHHHHHHHH--HHT-
T ss_pred EEEECCCCc-chhhCHHHH-HHHHHHcCCCcceeEeccCCCCCCC--Cccccc--ccchhhHHHHHHHHHHHHH--hhCC
Confidence 567799643 233455554 4556667999 799997432221 111110 0111223445555555543 3566
Q ss_pred CcEEEEEcChHHHHHHHHHh
Q psy4818 568 KYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~ 587 (734)
+|-|+|||+||.++-+++.
T Consensus 76 -kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp --EEEEEETCHHHHHHHHHH
T ss_pred -EEEEEEcCCcCHHHHHHHH
Confidence 8999999999999988875
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.6 Score=42.97 Aligned_cols=216 Identities=18% Similarity=0.165 Sum_probs=102.9
Q ss_pred EEEEEECCCCCcccccccccccCeeE--EEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSIS--WTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP 246 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~--wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~ 246 (734)
+|..+|+.+|+.+....-.....+.. -.++++.|+.... ...|+.+++.++.. +--+..+
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------~~~l~~~d~~tG~~--~W~~~~~ 65 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG----------------DGNLYALDAKTGKV--LWRFDLP 65 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET----------------TSEEEEEETTTSEE--EEEEECS
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC----------------CCEEEEEECCCCCE--EEEeecc
Confidence 56777777776543221110112222 3457777776632 22688888766631 1112221
Q ss_pred CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce-eeecccc-ceEE--EEEecCCeEEEEeC
Q psy4818 247 NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK-TVIPGMD-HHHE--IIANNGPELIVKTT 322 (734)
Q Consensus 247 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~l~~~~~-~~~~--~~s~dg~~l~~~s~ 322 (734)
. . ....+ ..++..+++... .+.|+.+|+.+|. ..|. ....... .... ....+++.+++...
T Consensus 66 ~-~-~~~~~--~~~~~~v~v~~~----~~~l~~~d~~tG~-------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (238)
T PF13360_consen 66 G-P-ISGAP--VVDGGRVYVGTS----DGSLYALDAKTGK-------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS 130 (238)
T ss_dssp S-C-GGSGE--EEETTEEEEEET----TSEEEEEETTTSC-------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEET
T ss_pred c-c-cccee--eecccccccccc----eeeeEecccCCcc-------eeeeeccccccccccccccCceEecCEEEEEec
Confidence 1 1 11111 234444444331 1478899987742 2333 1211100 1111 23445788887665
Q ss_pred CCCCCceEEEEecCCCCCCCceEeecCCCC-cee------EEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC
Q psy4818 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDEN-RTL------DVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD 395 (734)
Q Consensus 323 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~------~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~ 395 (734)
...|+.+|+++++. .|+.-+..... ..+ .......++.+++.. .++ .+..+|+++|+.+-...
T Consensus 131 ----~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g--~~~~~d~~tg~~~w~~~-- 200 (238)
T PF13360_consen 131 ----SGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSS-GDG--RVVAVDLATGEKLWSKP-- 200 (238)
T ss_dssp ----CSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEEC-CTS--SEEEEETTTTEEEEEEC--
T ss_pred ----cCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEECCEEEEEc-CCC--eEEEEECCCCCEEEEec--
Confidence 35699999988752 23333322111 111 122223335555443 333 25666999998543222
Q ss_pred CceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 396 LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 396 ~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
...+.. ....+++.+++.. . -..++.+|+ ++|
T Consensus 201 ~~~~~~-~~~~~~~~l~~~~-~---~~~l~~~d~-----~tG 232 (238)
T PF13360_consen 201 ISGIYS-LPSVDGGTLYVTS-S---DGRLYALDL-----KTG 232 (238)
T ss_dssp SS-ECE-CEECCCTEEEEEE-T---TTEEEEEET-----TTT
T ss_pred CCCccC-CceeeCCEEEEEe-C---CCEEEEEEC-----CCC
Confidence 222222 1234556666554 2 368999999 677
|
... |
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.029 Score=60.48 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=79.6
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH---------------------HHHHHHHhcCe
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI---------------------SRCMFLRHFNG 519 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------------------~~~~~l~~~G~ 519 (734)
.+.+....+..+..+++.... .....|+|+++-||||.+...++.. .-..|.. -.
T Consensus 43 y~~v~~~~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~a 118 (437)
T PLN02209 43 YIGIGEEENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK--TA 118 (437)
T ss_pred EEEecCCCCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh--cC
Confidence 344433345556666655443 2356899999999998864321100 0012332 35
Q ss_pred EEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHH-HcCCCCCCcEEEEEcChHHHHHHHHHh----cC-----
Q psy4818 520 IYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI-NKKYTKPKYITIMGGSNGGLLVGACLN----QR----- 589 (734)
Q Consensus 520 ~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~~~~~~~~----~~----- 589 (734)
.++.+|.+-|.||...=..... ..-..+.+|+...++... .........+.|+|.||||..+..++. ..
T Consensus 119 nllfiDqPvGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 119 NIIFLDQPVGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred cEEEecCCCCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 6888898877777622111111 111123456655554333 333334457999999999986666543 21
Q ss_pred C-CceeEEEEcCCcchhc
Q psy4818 590 P-ELYGAALILVGALDML 606 (734)
Q Consensus 590 p-~~~~a~v~~~~~~d~~ 606 (734)
+ =.++++++..|++|..
T Consensus 198 ~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 198 PPINLQGYVLGNPITHIE 215 (437)
T ss_pred CceeeeeEEecCcccChh
Confidence 1 1468999999988753
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.029 Score=60.48 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=76.4
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc---------------------HHHHHHHHhcCeEEEEEecc
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS---------------------ISRCMFLRHFNGIYAIPNIR 527 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~---------------------~~~~~~l~~~G~~v~~~~~r 527 (734)
+..+..+++...+ .....|+|+++-||||.+...++. ..-..|.. -..++.+|.+
T Consensus 49 ~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~anllfiDqP 124 (433)
T PLN03016 49 NVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK--MANIIFLDQP 124 (433)
T ss_pred CeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh--cCcEEEecCC
Confidence 4556666665443 245789999999999876421110 00012332 3568888988
Q ss_pred cCCCCCchhhhccccccC-CCchhHHHHHHH-HHHHcCCCCCCcEEEEEcChHHHHHHHHHhc----C-----C-CceeE
Q psy4818 528 GGGELGEDWHNAGRLLKK-QNCFDDFQAAAE-YMINKKYTKPKYITIMGGSNGGLLVGACLNQ----R-----P-ELYGA 595 (734)
Q Consensus 528 G~~~~g~~~~~~~~~~~~-~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~----~-----p-~~~~a 595 (734)
-|.||... ........ ....+|+...++ |+..........+.|.|.||||..+..++.. + + =-+++
T Consensus 125 vGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 77777521 11101111 112345555544 3433333345679999999999876666432 1 1 15789
Q ss_pred EEEcCCcchhc
Q psy4818 596 ALILVGALDML 606 (734)
Q Consensus 596 ~v~~~~~~d~~ 606 (734)
+++..|++|..
T Consensus 203 i~iGNg~t~~~ 213 (433)
T PLN03016 203 YMLGNPVTYMD 213 (433)
T ss_pred eEecCCCcCch
Confidence 99999987664
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.032 Score=60.61 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=70.7
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+...|..+.|+++...|+- |.....|.+||++.++.+.... .-.+...+.|.|=|.+++-.+.+.
T Consensus 69 hespIeSl~f~~~E~Llaa-----gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdt--------- 134 (825)
T KOG0267|consen 69 HESPIESLTFDTSERLLAA-----GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDT--------- 134 (825)
T ss_pred cCCcceeeecCcchhhhcc-----cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccc---------
Confidence 3456788999999999884 3334589999999988654322 222335778999776553222211
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.+..|++.-.. +++.-..+......+.++|||+|++ .+++.+.+.+||+..
T Consensus 135 -------d~~iwD~Rk~G----c~~~~~s~~~vv~~l~lsP~Gr~v~----~g~ed~tvki~d~~a 185 (825)
T KOG0267|consen 135 -------DLKIWDIRKKG----CSHTYKSHTRVVDVLRLSPDGRWVA----SGGEDNTVKIWDLTA 185 (825)
T ss_pred -------cceehhhhccC----ceeeecCCcceeEEEeecCCCceee----ccCCcceeeeecccc
Confidence 23444433211 2222222333344578999999998 334457888888865
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.1 Score=43.98 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=73.2
Q ss_pred EEeeEEeCCCCc---EEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 143 ALKLYAFSDNGK---HFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 143 ~~~~~~~SPDG~---~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
.+...+|||=.. .||. |.+..+|++.|+++|.......+ ...+-++.|||-..+|+++..-+
T Consensus 145 ~VYshamSp~a~sHcLiA~-----gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD--------- 210 (397)
T KOG4283|consen 145 KVYSHAMSPMAMSHCLIAA-----GTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSAD--------- 210 (397)
T ss_pred eeehhhcChhhhcceEEEE-----ecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCC---------
Confidence 366778888544 4443 23346899999999985322111 11236889999999999986422
Q ss_pred ccccCCcEEEEEECCCC----------CCCCeeEEe-cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCC
Q psy4818 219 TTAHMGQKIYYHVLGTE----------QDKDIPVVE-FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP 286 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~----------~~~~~~v~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~ 286 (734)
..+.+|++... +.....+.+ .+.+.+-+.+++|+.||++++.. +..+++.+|+...|.
T Consensus 211 ------g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~----gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 211 ------GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC----GTDDRIRVWNMESGR 279 (397)
T ss_pred ------ceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc----cCccceEEeecccCc
Confidence 13444443211 111111222 33344456789999999999843 233788999988754
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.029 Score=55.29 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=52.0
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHH-HHHHHHHcCCCCCC
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA-AAEYMINKKYTKPK 568 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~ 568 (734)
.|+++|++.|... .|. .++..|...++.|..+.++|-+. ......+++++++ .++.+.+.. ...
T Consensus 2 ~lf~~p~~gG~~~--~y~-~la~~l~~~~~~v~~i~~~~~~~----------~~~~~~si~~la~~y~~~I~~~~--~~g 66 (229)
T PF00975_consen 2 PLFCFPPAGGSAS--SYR-PLARALPDDVIGVYGIEYPGRGD----------DEPPPDSIEELASRYAEAIRARQ--PEG 66 (229)
T ss_dssp EEEEESSTTCSGG--GGH-HHHHHHTTTEEEEEEECSTTSCT----------TSHEESSHHHHHHHHHHHHHHHT--SSS
T ss_pred eEEEEcCCccCHH--HHH-HHHHhCCCCeEEEEEEecCCCCC----------CCCCCCCHHHHHHHHHHHhhhhC--CCC
Confidence 5788898866432 344 34566654248899999888431 1122234555544 344444332 112
Q ss_pred cEEEEEcChHHHHHHHHHhc
Q psy4818 569 YITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 569 ri~i~G~S~GG~~~~~~~~~ 588 (734)
.+.|+|||+||.+|..+|.+
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~ 86 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQ 86 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHH
T ss_pred CeeehccCccHHHHHHHHHH
Confidence 79999999999999998754
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.33 Score=48.36 Aligned_cols=126 Identities=11% Similarity=0.014 Sum_probs=69.8
Q ss_pred EcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc---CCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc
Q psy4818 465 RSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS---VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 465 ~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
++.-| .|.+.+.-. +++++|+||-.|--.-.. ....|+....+.+.+ .|.++-+|.+|..+-...+-.
T Consensus 5 ~t~~G-~v~V~v~G~----~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~-~f~i~Hi~aPGqe~ga~~~p~--- 75 (283)
T PF03096_consen 5 ETPYG-SVHVTVQGD----PKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQ-NFCIYHIDAPGQEEGAATLPE--- 75 (283)
T ss_dssp EETTE-EEEEEEESS------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHT-TSEEEEEE-TTTSTT-----T---
T ss_pred ccCce-EEEEEEEec----CCCCCceEEEeccccccchHHHHHHhcchhHHHHhh-ceEEEEEeCCCCCCCcccccc---
Confidence 33444 466665532 235799999999732111 223333344455654 899999999996542212111
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
...-.+.+++...+..+.++--+ +.+..+|--+|+++-...+..+|++.-+.|+..|.
T Consensus 76 -~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~ 133 (283)
T PF03096_consen 76 -GYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPT 133 (283)
T ss_dssp -T-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES--
T ss_pred -cccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecC
Confidence 11123445555544444443122 46999999999999999999999999999988774
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.1 Score=48.54 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=108.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+....|-+--++|+. |++..+|+|++..|++.+..- ...-....++-.|---.++-.++|
T Consensus 58 vRa~kfiaRknWiv~-----GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDD-------------- 118 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVT-----GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDD-------------- 118 (794)
T ss_pred hhhheeeeccceEEE-----ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCc--------------
Confidence 444555555555553 556789999999999854321 111112355666655444433332
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
..|..|+.+..= .-..+|++ +..+++.+++.|....-+.+.+ -...|.+|.+.. +. +--.+. +
T Consensus 119 --m~iKlW~we~~w-a~~qtfeG--H~HyVMqv~fnPkD~ntFaS~s---LDrTVKVWslgs-~~-------~nfTl~-g 181 (794)
T KOG0276|consen 119 --MTIKLWDWENEW-ACEQTFEG--HEHYVMQVAFNPKDPNTFASAS---LDRTVKVWSLGS-PH-------PNFTLE-G 181 (794)
T ss_pred --cEEEEeeccCce-eeeeEEcC--cceEEEEEEecCCCccceeeee---ccccEEEEEcCC-CC-------Cceeee-c
Confidence 245555554321 22346664 4568999999996554433322 225788888877 22 222233 3
Q ss_pred ccceEE-E-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 303 MDHHHE-I-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 303 ~~~~~~-~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
...+.. + +-+-|++=|+++.. .+..+-+||..++. +...+.+. ...++.+.+.+.=-|+++.+++| .+.+
T Consensus 182 HekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~---CV~TLeGH-t~Nvs~v~fhp~lpiiisgsEDG--Tvri 253 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKS---CVQTLEGH-TNNVSFVFFHPELPIIISGSEDG--TVRI 253 (794)
T ss_pred cccCcceEEeccCCCcceEEecC--CCceEEEeecchHH---HHHHhhcc-cccceEEEecCCCcEEEEecCCc--cEEE
Confidence 333333 2 44566666666654 34568888987765 33333332 34445555544345777777775 4556
Q ss_pred EEC
Q psy4818 381 HDL 383 (734)
Q Consensus 381 ~dl 383 (734)
|.-
T Consensus 254 Whs 256 (794)
T KOG0276|consen 254 WNS 256 (794)
T ss_pred ecC
Confidence 653
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.042 Score=36.73 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=20.8
Q ss_pred eEEEEEEecCCcEEEEEEecCC-CCceEEE
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNT-QGSDLHY 279 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~-~~~~i~~ 279 (734)
....+.|||||++|+|.+.+.. ...+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4567999999999999988752 2256764
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.053 Score=53.35 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=64.0
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCe--EEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNG--IYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
....++||+||.. ........ ..+++....|+ .++.+..+..|.. ..|..+ ...-...-.++...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn-~~f~~a~~-r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d--~~~a~~s~~~l~~~L~~L~~~- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYN-NSFEDALR-RAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYD--RESARFSGPALARFLRDLARA- 89 (233)
T ss_pred CCCeEEEEEeCCC-CCHHHHHH-HHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhh--hhhHHHHHHHHHHHHHHHHhc-
Confidence 4677999999953 33221111 12333333333 6888888865432 122221 111122334555555665544
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcC----C-----CceeEEEEcCCcchh
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQR----P-----ELYGAALILVGALDM 605 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~----p-----~~~~a~v~~~~~~d~ 605 (734)
....+|.|++||||+.+++.++.+- + ..|..+|+.+|-+|.
T Consensus 90 -~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 90 -PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred -cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 3467999999999999999987541 1 245666666665544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.5 Score=43.26 Aligned_cols=191 Identities=17% Similarity=0.094 Sum_probs=92.1
Q ss_pred eCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEE
Q psy4818 149 FSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 228 (734)
Q Consensus 149 ~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~ 228 (734)
..+++++|... +.. ..|+.+|..+|+.+........+.... ..++..|++...+ ..|+
T Consensus 32 ~~~~~~~v~~~-~~~----~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~----------------~~l~ 89 (238)
T PF13360_consen 32 AVPDGGRVYVA-SGD----GNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD----------------GSLY 89 (238)
T ss_dssp EEEETTEEEEE-ETT----SEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETT----------------SEEE
T ss_pred EEEeCCEEEEE-cCC----CEEEEEECCCCCEEEEeecccccccee-eecccccccccce----------------eeeE
Confidence 34456665554 222 479999999998643221111111112 3456667665521 1677
Q ss_pred EEECCCCCCCCeeEEe---cC-CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc
Q psy4818 229 YHVLGTEQDKDIPVVE---FP-NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD 304 (734)
Q Consensus 229 ~~~l~t~~~~~~~v~~---~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~ 304 (734)
.++..++.. ++. .. .............+|..+++... ...|+.+|+.+|.. -|..-.....
T Consensus 90 ~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~-------~w~~~~~~~~ 154 (238)
T PF13360_consen 90 ALDAKTGKV----LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKL-------LWKYPVGEPR 154 (238)
T ss_dssp EEETTTSCE----EEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEE-------EEEEESSTT-
T ss_pred ecccCCcce----eeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcE-------EEEeecCCCC
Confidence 777666542 222 11 00111122334444777665442 25788888887421 1211111100
Q ss_pred ---------ceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 305 ---------HHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 305 ---------~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
.......-.++.+|+.+.. + .++.+|+++++.. |+.. . .. ........++.+++.. .+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g---~~~~~d~~tg~~~-w~~~-~---~~-~~~~~~~~~~~l~~~~-~~-- 221 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDGRVYVSSGD-G---RVVAVDLATGEKL-WSKP-I---SG-IYSLPSVDGGTLYVTS-SD-- 221 (238)
T ss_dssp SS--EEEETTEEEEEECCTTEEEEECCT-S---SEEEEETTTTEEE-EEEC-S---S--ECECEECCCTEEEEEE-TT--
T ss_pred CCcceeeecccccceEEECCEEEEEcCC-C---eEEEEECCCCCEE-EEec-C---CC-ccCCceeeCCEEEEEe-CC--
Confidence 0111122223466655443 2 2777798887521 3211 1 12 2221234446666655 43
Q ss_pred eeEEEEECCCCcee
Q psy4818 376 SVMDLHDLNTGKRL 389 (734)
Q Consensus 376 ~~l~~~dl~~g~~~ 389 (734)
..|+.+|+++|+.+
T Consensus 222 ~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 222 GRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEE
Confidence 68999999999863
|
... |
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.9 Score=43.66 Aligned_cols=244 Identities=16% Similarity=0.194 Sum_probs=129.1
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc---ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD---YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~---~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..++++.|||-..--.|+++..| +|+..|++++.. +..-..+..+++..++.+...++|...-+
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G--------- 301 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG--------- 301 (498)
T ss_pred ccccceEecCCChhheeeeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc---------
Confidence 35888999999988888887776 599999998763 22112444567888888888888776421
Q ss_pred ccccCCcEEEEEECCCCCC--CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC-C
Q psy4818 219 TTAHMGQKIYYHVLGTEQD--KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF-P 295 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~ 295 (734)
.+-++++.++.. +.+.+.. .-+.++++.|-..+++.+.+-. ....+||+..... .. +
T Consensus 302 -------~f~~iD~R~~~s~~~~~~lh~-----kKI~sv~~NP~~p~~laT~s~D---~T~kIWD~R~l~~-----K~sp 361 (498)
T KOG4328|consen 302 -------NFNVIDLRTDGSEYENLRLHK-----KKITSVALNPVCPWFLATASLD---QTAKIWDLRQLRG-----KASP 361 (498)
T ss_pred -------ceEEEEeecCCccchhhhhhh-----cccceeecCCCCchheeecccC---cceeeeehhhhcC-----CCCc
Confidence 233444444332 2222221 2345789999998888765432 3566788765211 11 2
Q ss_pred ceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecC--CCCCCCceEeecCCCCceeEE-----EEEeeCCEEE
Q psy4818 296 LKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLN--NPCEKNWKTLIPEDENRTLDV-----VAAVANNKLI 367 (734)
Q Consensus 296 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~l~ 367 (734)
..-.+.+...... +|||.|..|+ .+.. +..|-++|.. +.... ....+++.. ....+ +.|..+..++
T Consensus 362 ~lst~~HrrsV~sAyFSPs~gtl~-TT~~---D~~IRv~dss~~sa~~~-p~~~I~Hn~-~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 362 FLSTLPHRRSVNSAYFSPSGGTLL-TTCQ---DNEIRVFDSSCISAKDE-PLGTIPHNN-RTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred ceecccccceeeeeEEcCCCCceE-eecc---CCceEEeecccccccCC-ccceeeccC-cccccccchhheeCCCccEE
Confidence 2222333333333 5999998843 3332 2346667753 11111 123344431 11111 1233334455
Q ss_pred EEEEeCCceeEEEEECCCCceeeeeCCC-CceEEe-eccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITH-ISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~-~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.... ..|-++|-+.|+.+-.+..| ...|.+ ..+.|-+..++ ++.+.-+.+|++--
T Consensus 436 ~vg~~~--r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~---aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 436 VVGRYP--RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLA---AGGNSSGKIYVFTN 494 (498)
T ss_pred EEeccC--cceeEEcCCCCEEeeeccCccccccccceeeccccccee---ccCCccceEEEEec
Confidence 444322 45888887555544555555 223322 23444443333 23333456776643
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.36 Score=53.29 Aligned_cols=198 Identities=9% Similarity=0.036 Sum_probs=111.9
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+.-++..+.|++-.-.|..+-+ ....|..||+...+-......+. .+..+.|||--...|++..+.
T Consensus 132 H~Rs~~~ldfh~tep~iliSGS----QDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds--------- 198 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISGS----QDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS--------- 198 (839)
T ss_pred hccceeeeeeccCCccEEEecC----CCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC---------
Confidence 3456778899998888887544 44689999998776444333322 235789999654444444322
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
..|..|++... ++..+....+.+.+.-+.|+|++.|||- ++....|.+||..+... .+...
T Consensus 199 ------G~lqlWDlRqp---~r~~~k~~AH~GpV~c~nwhPnr~~lAT----GGRDK~vkiWd~t~~~~------~~~~t 259 (839)
T KOG0269|consen 199 ------GYLQLWDLRQP---DRCEKKLTAHNGPVLCLNWHPNREWLAT----GGRDKMVKIWDMTDSRA------KPKHT 259 (839)
T ss_pred ------ceEEEeeccCc---hhHHHHhhcccCceEEEeecCCCceeee----cCCCccEEEEeccCCCc------cceeE
Confidence 25777887654 2233333344556778999999999982 33347889999987321 11111
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCC-EEEEEEEeCC
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANN-KLIVHYIQNV 374 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 374 (734)
+ ..-.....+ |-|+-...+-.+. -.....|++||+.-+=. ....+..+ ..++..+.|..++ .+++..+.++
T Consensus 260 I-nTiapv~rVkWRP~~~~hLAtcs-mv~dtsV~VWDvrRPYI-P~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 260 I-NTIAPVGRVKWRPARSYHLATCS-MVVDTSVHVWDVRRPYI-PYATFLEH--TDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred E-eecceeeeeeeccCccchhhhhh-ccccceEEEEeeccccc-cceeeecc--CccccceeccCCCceeeEeecCcc
Confidence 1 111111122 7777654333322 23456799999965320 11223233 3555666665433 3445555553
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.75 Score=46.24 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
..++.-|-..+|+-.+.| ..+.+|++.+++- ....+.+-....++++|+---|++-.
T Consensus 155 r~vavdP~n~wf~tgs~D----------------rtikIwDlatg~L----kltltGhi~~vr~vavS~rHpYlFs~--- 211 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSAD----------------RTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRHPYLFSA--- 211 (460)
T ss_pred EEEeeCCCceeEEecCCC----------------ceeEEEEcccCeE----EEeecchhheeeeeeecccCceEEEe---
Confidence 356667766555544433 2688899998863 23333344466789999999998732
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccc----eEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceE
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH----HHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT 345 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~----~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 345 (734)
.....|..||++.. +++....+ .+.. ..|--+ +++...+ +..+-+||+.+.. ++..
T Consensus 212 -gedk~VKCwDLe~n------------kvIR~YhGHlS~V~~L~lhPTld-vl~t~gr---Dst~RvWDiRtr~--~V~~ 272 (460)
T KOG0285|consen 212 -GEDKQVKCWDLEYN------------KVIRHYHGHLSGVYCLDLHPTLD-VLVTGGR---DSTIRVWDIRTRA--SVHV 272 (460)
T ss_pred -cCCCeeEEEechhh------------hhHHHhccccceeEEEeccccce-eEEecCC---cceEEEeeecccc--eEEE
Confidence 33478999999871 12222211 1221 223222 4444433 3457788987764 2333
Q ss_pred eecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceE
Q psy4818 346 LIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTI 424 (734)
Q Consensus 346 l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~ 424 (734)
+..+. ..+..+... -+.+++ +.+.+ ..+.+||+..|+....++...-++.+++..|+... |..++ |..+
T Consensus 273 l~GH~--~~V~~V~~~~~dpqvi-t~S~D--~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~--fASas---~dni 342 (460)
T KOG0285|consen 273 LSGHT--NPVASVMCQPTDPQVI-TGSHD--STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL--FASAS---PDNI 342 (460)
T ss_pred ecCCC--CcceeEEeecCCCceE-EecCC--ceEEEeeeccCceeEeeecccceeeEEecCCchhh--hhccC---Cccc
Confidence 33333 334444333 224544 44444 57999999999987777766667778888887532 22222 3355
Q ss_pred EEEeC
Q psy4818 425 YHCNI 429 (734)
Q Consensus 425 ~~~d~ 429 (734)
-.+++
T Consensus 343 k~w~~ 347 (460)
T KOG0285|consen 343 KQWKL 347 (460)
T ss_pred eeccC
Confidence 66666
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.035 Score=53.98 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=46.2
Q ss_pred ecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEE
Q psy4818 525 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALI 598 (734)
Q Consensus 525 ~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~ 598 (734)
=+||.......|.+....... ........|++|+.+.-...++.|.+.|||.||++|..++...++ ++..+++
T Consensus 42 aFRGTd~t~~~W~ed~~~~~~-~~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~ 118 (224)
T PF11187_consen 42 AFRGTDDTLVDWKEDFNMSFQ-DETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYS 118 (224)
T ss_pred EEECCCCchhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEE
Confidence 367765555667765443322 234445677777765422334569999999999999999877433 4455554
|
|
| >KOG4388|consensus | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.045 Score=58.23 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCCC-cCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc---
Q psy4818 487 RNPVIIYGYGGYGV-SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK--- 562 (734)
Q Consensus 487 ~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--- 562 (734)
..-+|++.|||... +...+.-+...+|..+.|.-|+.+||.-..| .......+.+.-|.-|++++
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~al 463 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCAL 463 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHHH
Confidence 45589999998443 4555666667788878899999999876544 33456678888888888876
Q ss_pred -CCCCCCcEEEEEcChHHHHHHHHH
Q psy4818 563 -KYTKPKYITIMGGSNGGLLVGACL 586 (734)
Q Consensus 563 -~~~d~~ri~i~G~S~GG~~~~~~~ 586 (734)
|+ ..+||++.|.|+||.+.+-++
T Consensus 464 lG~-TgEriv~aGDSAGgNL~~~Va 487 (880)
T KOG4388|consen 464 LGS-TGERIVLAGDSAGGNLCFTVA 487 (880)
T ss_pred hCc-ccceEEEeccCCCcceeehhH
Confidence 33 457999999999999876554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=3.4 Score=40.64 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCeEEEeCCCCcCC-------CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc--ccccccccCeeEE
Q psy4818 125 GSTEVFLDPNKLSK-------DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP--EVLKNVKFPSISW 195 (734)
Q Consensus 125 g~~~~l~d~~~~~~-------~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~--~~~~~~~~~~~~w 195 (734)
|..-.+||++.-.+ .+..-.+.-.|||||++|.-+...-...+..|-|+|...+-... ....+.....+.|
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~l 169 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTL 169 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEE
Confidence 44455666654321 22233456789999998876655544455689999987543211 1122233357899
Q ss_pred EcCCcEEEEEE
Q psy4818 196 THDHKGFFYNQ 206 (734)
Q Consensus 196 SpDg~~l~y~~ 206 (734)
++||+.++...
T Consensus 170 m~DGrtlvvan 180 (366)
T COG3490 170 MADGRTLVVAN 180 (366)
T ss_pred ecCCcEEEEeC
Confidence 99999888754
|
|
| >KOG2182|consensus | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.15 Score=53.86 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=80.9
Q ss_pred EEEEEeccccCCCCCcEEEEecCCCCCcCCc-c-ccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc-------c
Q psy4818 474 MYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-T-FSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL-------K 544 (734)
Q Consensus 474 ~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~-~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~-------~ 544 (734)
=++|.+..+. ....|+.|++-|-......| . -...+..+..+.|..|+....|= ||..+-- +.+. .
T Consensus 73 q~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~-~~~st~nlk~LS 147 (514)
T KOG2182|consen 73 QRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPI-GDLSTSNLKYLS 147 (514)
T ss_pred hheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCC-CCCcccchhhhh
Confidence 3444454442 34568888885532122122 1 12246788888999999999997 6654222 1111 1
Q ss_pred CCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 545 KQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
-...+.|+...|+.+-.+ +..++.+.+.+|+||=|.|++|.=..+|++..++|+.++
T Consensus 148 s~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSa 205 (514)
T KOG2182|consen 148 SLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSA 205 (514)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccc
Confidence 123467777777777555 456767999999999999999999999998777776544
|
|
| >KOG2565|consensus | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.076 Score=53.70 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhc---------CeEEEEEecccCCCCCchhhh
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF---------NGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~---------G~~v~~~~~rG~~~~g~~~~~ 538 (734)
.|.+|+-.-+.|+..+..++.-.|+.+||.||+-.. |-. +..+|..- -|-|++|.++| || |.+
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~E--Fyk-fIPlLT~p~~hg~~~d~~FEVI~PSlPG---yg--wSd 203 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVRE--FYK-FIPLLTDPKRHGNESDYAFEVIAPSLPG---YG--WSD 203 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCchHHH--HHh-hhhhhcCccccCCccceeEEEeccCCCC---cc--cCc
Confidence 577888888877754333333345666999987432 111 22334322 36799999998 76 444
Q ss_pred ccccccCCCchhHHHHHHHHH-HHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYM-INKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l-~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
+. ...|-+.. .+..+.+-| ...|+ ++..|.|+-+|..++..++..+|+.+.+.=+..
T Consensus 204 ~~-sk~GFn~~-a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 204 AP-SKTGFNAA-ATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred CC-ccCCccHH-HHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 32 12222222 333334433 33343 689999999999999999999999766554443
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=95.09 E-value=9.7 Score=45.03 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=106.6
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCC----C----C
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDIN----G----T 213 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~----~----~ 213 (734)
..+-++.+--|+..|.++... .+|.+.|.++........-...+...+||||++.++.++....- . .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 346677888888888776642 25777788877632211111123688999999999988753210 0 0
Q ss_pred -CCCCcccccCCcEEEEEECCCCCCC------------CeeEEecC-----CCCeeEEEEEEecCCcEEEEEEecCCCC-
Q psy4818 214 -ADGTETTAHMGQKIYYHVLGTEQDK------------DIPVVEFP-----NGRSLGLHSEVTDCGRYLLVSTSNNTQG- 274 (734)
Q Consensus 214 -~~~~~~~~~~~~~l~~~~l~t~~~~------------~~~v~~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~- 274 (734)
|...+.+..+..+. +++|=+..+ ...+..++ +....-.+++|--||++.+++.......
T Consensus 144 ~E~~L~~d~~~~sk~--v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKF--VNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred hcccccccccccccc--ceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 00000000000000 011100000 00000000 0001123589999999999866543333
Q ss_pred ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCce
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRT 354 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 354 (734)
..|.+||.++ . |...... .......-.|-|.|..+...-.... ..+|..+.-++-....+..-.+.+ ...
T Consensus 222 RkirV~drEg-~---Lns~se~----~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNGL~hg~f~l~~p~d-e~~ 291 (1265)
T KOG1920|consen 222 RKIRVYDREG-A---LNSTSEP----VEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNGLRHGEFVLPFPLD-EKE 291 (1265)
T ss_pred eeEEEecccc-h---hhcccCc----ccccccceeecCCCCeEeeeeecCC-CCcEEEEecCCccccccccCCccc-ccc
Confidence 6888998774 1 1000000 0111111238888877765544432 336777776654332232222222 111
Q ss_pred eEEEEEeeCCEEEEEEEeCCc-eeEEEEEC
Q psy4818 355 LDVVAAVANNKLIVHYIQNVR-SVMDLHDL 383 (734)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~-~~l~~~dl 383 (734)
++...|..+..++........ ..|++|-.
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEe
Confidence 455555544444444333333 44777765
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.94 Score=49.69 Aligned_cols=106 Identities=6% Similarity=0.069 Sum_probs=62.6
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC---CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCC
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE---NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTG 386 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g 386 (734)
+.|..+.++.... +.+|-.+++.+++ .+..+.+.. +..+. +.... ..+|+..+-.. ..|.++|.-+|
T Consensus 604 Vdp~~k~v~t~cQ----Drnirif~i~sgK---q~k~FKgs~~~eG~lIK-v~lDP-SgiY~atScsd-ktl~~~Df~sg 673 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQ----DRNIRIFDIESGK---QVKSFKGSRDHEGDLIK-VILDP-SGIYLATSCSD-KTLCFVDFVSG 673 (1080)
T ss_pred eCCCcceEEEEec----ccceEEEeccccc---eeeeecccccCCCceEE-EEECC-CccEEEEeecC-CceEEEEeccc
Confidence 6666665554433 2347777887766 244555432 23332 33333 44554443221 46888999899
Q ss_pred ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 387 KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 387 ~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+...+.......|.++-+.+|-+.++ +.++. +-+|+|.+
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlI-SvsgD---gCIFvW~l 712 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLI-SVSGD---GCIFVWKL 712 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhhe-eecCC---ceEEEEEC
Confidence 98777776655677888888876654 44443 36777776
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.01 E-value=2 Score=44.27 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=81.0
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccC-CCCCchh-
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGG-GELGEDW- 536 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-~~~g~~~- 536 (734)
-+.+++.. ++.++ ..+++|... ....-+||++||.......+........-|.+.||+.+.+..+.- +..-...
T Consensus 62 ~e~~~L~~-~~~~f-laL~~~~~~--~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~ 137 (310)
T PF12048_consen 62 DEVQWLQA-GEERF-LALWRPANS--AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRA 137 (310)
T ss_pred hhcEEeec-CCEEE-EEEEecccC--CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccC
Confidence 34555554 44444 456666542 344558889998655555555555566778889999999887750 0000000
Q ss_pred ------hhcccc---------------------ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC
Q psy4818 537 ------HNAGRL---------------------LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR 589 (734)
Q Consensus 537 ------~~~~~~---------------------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~ 589 (734)
..++.. ......+.-+.+++.++.+++. .+|+|+|++.|+++++.++...
T Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~ 214 (310)
T PF12048_consen 138 TEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEK 214 (310)
T ss_pred CCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcC
Confidence 000000 0011223344556666665543 3499999999999999999887
Q ss_pred CC-ceeEEEEcCCc
Q psy4818 590 PE-LYGAALILVGA 602 (734)
Q Consensus 590 p~-~~~a~v~~~~~ 602 (734)
+. ...+.|+..+.
T Consensus 215 ~~~~~daLV~I~a~ 228 (310)
T PF12048_consen 215 PPPMPDALVLINAY 228 (310)
T ss_pred CCcccCeEEEEeCC
Confidence 64 35677766653
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.2 Score=41.78 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=75.4
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc-cc-----ccc-ccccCeeEEEc--CCcEEEEEEEecCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PE-----VLK-NVKFPSISWTH--DHKGFFYNQYCDINGT 213 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~-~~-----~~~-~~~~~~~~wSp--Dg~~l~y~~~~~~~~~ 213 (734)
.+..+.|-|++.+||-..+ ..|.+|+++.+..+ .. ..+ ...+.+-+||| ||..++.+..
T Consensus 125 ~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d------ 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD------ 192 (370)
T ss_pred ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC------
Confidence 5778999999999996653 46889998876541 11 111 22456789999 8888876653
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
..++.+++.|.... ..| + ..+.....++.+.|+-++++.+.. +...|.+||...
T Consensus 193 -----------~tl~~~D~RT~~~~-~sI-~-dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~ 246 (370)
T KOG1007|consen 193 -----------STLQFWDLRTMKKN-NSI-E-DAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRK 246 (370)
T ss_pred -----------CcEEEEEccchhhh-cch-h-hhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccC
Confidence 25788888764321 111 1 123335667889999999887653 336788999876
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.22 Score=54.37 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=68.1
Q ss_pred CCeEEEeCCCCcCCCC-----cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcC
Q psy4818 125 GSTEVFLDPNKLSKDG-----TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHD 198 (734)
Q Consensus 125 g~~~~l~d~~~~~~~~-----~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpD 198 (734)
|-..+|+++..-...+ ...+..++|||||||+|-... | ....+.||+++....+.+.. ......-.+|||-
T Consensus 57 GCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEc--G-~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~ 133 (1080)
T KOG1408|consen 57 GCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGEC--G-RTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPG 133 (1080)
T ss_pred CcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEeccc--C-CCccceeeeeccccchhhhhhccccceeeeecCC
Confidence 4445566655332221 235788999999999995432 2 23579999998765432221 2222367899999
Q ss_pred CcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEE
Q psy4818 199 HKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVST 268 (734)
Q Consensus 199 g~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~ 268 (734)
+|+|.-+.... .....++-|+........ .-...+..++||.||.|.+-..
T Consensus 134 ~kyvvSVGsQH------------DMIVnv~dWr~N~~~asn-------kiss~Vsav~fsEdgSYfvT~g 184 (1080)
T KOG1408|consen 134 NKYVVSVGSQH------------DMIVNVNDWRVNSSGASN-------KISSVVSAVAFSEDGSYFVTSG 184 (1080)
T ss_pred CcEEEeecccc------------ceEEEhhhhhhccccccc-------ccceeEEEEEEccCCceeeeee
Confidence 99887654311 001122322222111110 0122456789999999987543
|
|
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.47 Score=47.72 Aligned_cols=101 Identities=16% Similarity=0.031 Sum_probs=57.6
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhc-CeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF-NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
.+.|+||+ ||-......++.. .+.+++... |.-+.++.+ | .+ .+++ +-.+..+.+..+.+.|.+...
T Consensus 24 ~~~P~Viw-HG~GD~c~~~g~~-~~~~l~~~~~g~~~~~i~i-g-~~-----~~~s---~~~~~~~Qve~vce~l~~~~~ 91 (314)
T PLN02633 24 VSVPFIML-HGIGTQCSDATNA-NFTQLLTNLSGSPGFCLEI-G-NG-----VGDS---WLMPLTQQAEIACEKVKQMKE 91 (314)
T ss_pred CCCCeEEe-cCCCcccCCchHH-HHHHHHHhCCCCceEEEEE-C-CC-----cccc---ceeCHHHHHHHHHHHHhhchh
Confidence 46788777 9864444433322 345666443 555555554 2 11 1111 222333445555556555333
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCC--ceeEEEEc
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPE--LYGAALIL 599 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~--~~~a~v~~ 599 (734)
.. +-+-++|+|.||.+.=+++.+.|+ ..+-.|+.
T Consensus 92 l~-~G~naIGfSQGGlflRa~ierc~~~p~V~nlISl 127 (314)
T PLN02633 92 LS-QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISL 127 (314)
T ss_pred hh-CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEe
Confidence 32 358999999999999999988876 24555543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=94.82 E-value=3.5 Score=40.54 Aligned_cols=256 Identities=11% Similarity=0.078 Sum_probs=130.2
Q ss_pred EEeeEEeC--CCC-cEEEEEEeCC-CCceEEEEEEECCCCCcccccccc--cccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 143 ALKLYAFS--DNG-KHFAYCLSKS-GSDWNTLHIKDVDTGKDYPEVLKN--VKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 143 ~~~~~~~S--PDG-~~la~~~~~~-g~~~~~l~v~dl~~g~~~~~~~~~--~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
.+.+..|| ||- -+||..+-.. -+..-+|.-.|.++++.+...... ....-+.|.||.+.++= .. .
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p-dl--L------ 116 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP-DL--L------ 116 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc-ch--h------
Confidence 34555566 443 3466654322 122345666666777765433211 12256889999875542 10 0
Q ss_pred CcccccCCcEEEEEECCCCCCC--CeeEEecCCCCe---eEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCcc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDK--DIPVVEFPNGRS---LGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~--~~~v~~~~~~~~---~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l 290 (734)
......|.+|+++....+ -..+.....+.. -..++.|.. |-++|...+ - + ...-+||++++....
T Consensus 117 ----ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-i--D-TTCTiWdie~~~~~~- 187 (364)
T KOG0290|consen 117 ----ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-I--D-TTCTIWDIETGVSGT- 187 (364)
T ss_pred ----hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec-c--c-CeEEEEEEeeccccc-
Confidence 011124666666643221 111111111111 133566765 445554322 1 2 456677888741111
Q ss_pred cCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC--CceeEEEEEeeCCEEE
Q psy4818 291 SGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE--NRTLDVVAAVANNKLI 367 (734)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~l~ 367 (734)
-..+|+.+....+.. |+..|..++..... ++.+-.+|+...+. ..++-+.+ ...+.-..+.+.+--|
T Consensus 188 ----vkTQLIAHDKEV~DIaf~~~s~~~FASvga---DGSvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 188 ----VKTQLIAHDKEVYDIAFLKGSRDVFASVGA---DGSVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQDPNY 257 (364)
T ss_pred ----eeeEEEecCcceeEEEeccCccceEEEecC---CCcEEEEEeccccc---ceEEecCCCCCCcceeeccCcCCchH
Confidence 124577666666665 77765555544332 44577788876553 33343332 2334344444323222
Q ss_pred EEEEeCCceeEEEEECCC-CceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VHYIQNVRSVMDLHDLNT-GKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~~-g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...-......+.++|+.. +..+.+|..+.+.|.++.+.|....-+.++.... +..++|+
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~---qaliWDl 317 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC---QALIWDL 317 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc---eEEEEec
Confidence 222222335788888743 3344566666788889999998877766655443 5677888
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.81 E-value=2 Score=47.62 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=58.8
Q ss_pred EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEE
Q psy4818 253 LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVT 332 (734)
Q Consensus 253 ~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~ 332 (734)
..+.++|||++++++.........+..++..+ .++...+.-.. ...+.+||+..++ + ..++-+
T Consensus 238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e---------~d~~vvfni~~--iea~vkdGK~~~V--~----gn~V~V 300 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE---------RDWVVVFNIAR--IEEAVKAGKFKTI--G----GSKVPV 300 (635)
T ss_pred ccceECCCCCEEEEeccCcccCcceeeecccc---------CceEEEEchHH--HHHhhhCCCEEEE--C----CCEEEE
Confidence 35789999999998764322224555555544 12222221110 1125678887665 1 235888
Q ss_pred EecCCCC--CCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeCCceeEEEEECCCCc
Q psy4818 333 INLNNPC--EKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 333 ~d~~~~~--~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
+|..+.. .......++-. ... .++.+ ++++++|+.. ...+.+.++|+++-+
T Consensus 301 ID~~t~~~~~~~v~~yIPVG-KsP-HGV~vSPDGkylyVan--klS~tVSVIDv~k~k 354 (635)
T PRK02888 301 VDGRKAANAGSALTRYVPVP-KNP-HGVNTSPDGKYFIANG--KLSPTVTVIDVRKLD 354 (635)
T ss_pred EECCccccCCcceEEEEECC-CCc-cceEECCCCCEEEEeC--CCCCcEEEEEChhhh
Confidence 9987610 01234444433 112 22333 4545555443 234678899986543
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.36 Score=48.09 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=117.2
Q ss_pred CCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeE
Q psy4818 163 SGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPV 242 (734)
Q Consensus 163 ~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v 242 (734)
+|....+|.+||..+-+.+....+... +-+..-=|.+-|.-.+.+ ..|.+|++.++..-.+++
T Consensus 212 SGlrDnTikiWD~n~~~c~~~L~GHtG-SVLCLqyd~rviisGSSD----------------sTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNSLECLKILTGHTG-SVLCLQYDERVIVSGSSD----------------STVRVWDVNTGEPLNTLI 274 (499)
T ss_pred cccccCceEEeccccHHHHHhhhcCCC-cEEeeeccceEEEecCCC----------------ceEEEEeccCCchhhHHh
Confidence 466678999999887765543333331 334444466533333322 268888988876544433
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeC
Q psy4818 243 VEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT 322 (734)
Q Consensus 243 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 322 (734)
.. -..+..+.++. .+++ +.+. ...+.+||+.. +. . ...+.+..+.......+.=|.+ |+++.
T Consensus 275 hH----ceaVLhlrf~n--g~mv-tcSk---DrsiaVWdm~s-ps-~----it~rrVLvGHrAaVNvVdfd~k--yIVsA 336 (499)
T KOG0281|consen 275 HH----CEAVLHLRFSN--GYMV-TCSK---DRSIAVWDMAS-PT-D----ITLRRVLVGHRAAVNVVDFDDK--YIVSA 336 (499)
T ss_pred hh----cceeEEEEEeC--CEEE-EecC---CceeEEEeccC-ch-H----HHHHHHHhhhhhheeeeccccc--eEEEe
Confidence 22 22445666653 3333 2222 24678888877 32 1 1122233333344444444555 44444
Q ss_pred CCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEee
Q psy4818 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHI 402 (734)
Q Consensus 323 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~ 402 (734)
. + +..|-+|+..+.+ +...+.+....+. ..-.. ++++++.+.+ ..+.+||+..|+.++.|.....-|..+
T Consensus 337 S-g-DRTikvW~~st~e---fvRtl~gHkRGIA--ClQYr-~rlvVSGSSD--ntIRlwdi~~G~cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 337 S-G-DRTIKVWSTSTCE---FVRTLNGHKRGIA--CLQYR-DRLVVSGSSD--NTIRLWDIECGACLRVLEGHEELVRCI 406 (499)
T ss_pred c-C-CceEEEEecccee---eehhhhcccccce--ehhcc-CeEEEecCCC--ceEEEEeccccHHHHHHhchHHhhhhe
Confidence 3 2 3458889988876 3333333222221 11233 7888887766 579999999999888887664444333
Q ss_pred ccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 403 SGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 403 ~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
-+ |.++++ +. .+ -+.+-++|+
T Consensus 407 RF--d~krIV-SG-aY--DGkikvWdl 427 (499)
T KOG0281|consen 407 RF--DNKRIV-SG-AY--DGKIKVWDL 427 (499)
T ss_pred ee--cCceee-ec-cc--cceEEEEec
Confidence 33 333332 11 11 245667777
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=94.33 E-value=1 Score=48.13 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=50.2
Q ss_pred ceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC------Cc----
Q psy4818 328 GKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD------LG---- 397 (734)
Q Consensus 328 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~------~g---- 397 (734)
..||+++++.+. |-..+.-. ...+..+....-+.|+.....+ +.+..||..+......|... .+
T Consensus 155 ~evYRlNLEqGr---fL~P~~~~-~~~lN~v~in~~hgLla~Gt~~--g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~ 228 (703)
T KOG2321|consen 155 SEVYRLNLEQGR---FLNPFETD-SGELNVVSINEEHGLLACGTED--GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA 228 (703)
T ss_pred cceEEEEccccc---cccccccc-cccceeeeecCccceEEecccC--ceEEEecchhhhhheeeecccccCCCcccccc
Confidence 468888888765 22111111 1222333333335677776655 36777887554433333211 12
Q ss_pred -eEEeeccCcccceEEEEEecCCCCceEEEEeCC
Q psy4818 398 -QITHISGRRKYNEVFYGFTSFLQPGTIYHCNIP 430 (734)
Q Consensus 398 -~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~ 430 (734)
+|+++.++.++=.+.+..+ -+.+|+||+.
T Consensus 229 ~svTal~F~d~gL~~aVGts----~G~v~iyDLR 258 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTS----TGSVLIYDLR 258 (703)
T ss_pred CcceEEEecCCceeEEeecc----CCcEEEEEcc
Confidence 3667777766655655443 3579999993
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=6.3 Score=44.47 Aligned_cols=172 Identities=12% Similarity=0.159 Sum_probs=91.1
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc----ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD----YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~----~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
.+..+++|+||+.+|+... +...+++-++..+.. ............++|.++| .++-. ...
T Consensus 364 ~~~s~avS~~g~~~A~v~~----~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv-d~~--------- 428 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA----DGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVV-DRD--------- 428 (599)
T ss_pred CccceEEcCCCceEEEEcC----CCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEe-cCC---------
Confidence 4678999999999998853 225788877655443 1122233335788998888 56544 211
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC--CcccCCCCc
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD--GKISGKFPL 296 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~ 296 (734)
.... ++.+..-+++....+-.. .... .-+..+..|+||..+++..... ...+|++.-+..... ..|+ .+
T Consensus 429 --~~~~-~vl~v~~~~G~~~~V~~~-~l~g-~~I~~lrvSrDG~RvAvv~~~~-g~~~v~va~V~R~~~G~~~l~---~~ 499 (599)
T PRK13613 429 --PADP-RLLWLLQGDGEPVEVRTP-ELDG-HRVVAVRVARDGVRVALIVEKD-GRRSLQIGRIVRDAKAVVSVE---EF 499 (599)
T ss_pred --CCCc-eEEEEEcCCCcEEEeecc-ccCC-CEeEEEEECCCccEEEEEEecC-CCcEEEEEEEEeCCCCcEEee---cc
Confidence 1111 322222223222111111 1111 1467899999999999987653 335666654432111 1221 12
Q ss_pred eeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 297 KTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
+.+.......... |..+ ..|+++....+....++.+.+++..
T Consensus 500 ~~l~~~l~~v~~~~W~~~-~sL~Vlg~~~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 500 RSLAPELEDVTDMSWAGD-SQLVVLGREEGGVQQARYVQVDGST 542 (599)
T ss_pred EEeccCCCccceeEEcCC-CEEEEEeccCCCCcceEEEecCCcC
Confidence 2232222222222 7765 4576655433445669999998754
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=7.3 Score=39.09 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=63.8
Q ss_pred ceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe
Q psy4818 166 DWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE 244 (734)
Q Consensus 166 ~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~ 244 (734)
-...|+|+|+.+++...-.. .+..+..+.+-|+.-.|+.+...+ +.|.+|++.+.. =+.||.
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD---------------~svRlwnI~~~~--Cv~VfG 175 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD---------------HSVRLWNIQTDV--CVAVFG 175 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC---------------ceEEEEeccCCe--EEEEec
Confidence 45789999999887543222 222346778889887777766432 378889987653 345665
Q ss_pred cC-CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC
Q psy4818 245 FP-NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH 283 (734)
Q Consensus 245 ~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~ 283 (734)
+- .+..-+.++.||+||.+|+ +.+....|.+|++.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~----ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIA----SCGMDHSLKLWRLN 211 (385)
T ss_pred ccccccCcEEEEEEcCCCCeee----ccCCcceEEEEecC
Confidence 42 2344678999999999887 22223566667665
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.5 Score=42.06 Aligned_cols=201 Identities=7% Similarity=0.032 Sum_probs=101.7
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCC-CCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQ-DKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
...+|++|+..|+.+.... +|.+......+ .+ ...+..++......+.|+|.+..|+--..
T Consensus 14 tchAwn~drt~iAv~~~~~----------------evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNH----------------EVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred eeeeecCCCceEEeccCCc----------------eEEEEEecCCCCce--eceehhhhCcceeEEeecCCCCceeEccC
Confidence 5679999999999877532 34444333322 22 23333445556778999999988874332
Q ss_pred cCCCCceEEEEeC-CCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCc--eE
Q psy4818 270 NNTQGSDLHYFDL-HSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNW--KT 345 (734)
Q Consensus 270 ~~~~~~~i~~~d~-~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~~ 345 (734)
+ ..-|+|.. .++.- .+...|..-.+....+ |+|.+.+|++-+.. ..+-++-.+..+ .| ..
T Consensus 76 d----rnayVw~~~~~~~W------kptlvLlRiNrAAt~V~WsP~enkFAVgSga----r~isVcy~E~EN--dWWVsK 139 (361)
T KOG1523|consen 76 D----RNAYVWTQPSGGTW------KPTLVLLRINRAATCVKWSPKENKFAVGSGA----RLISVCYYEQEN--DWWVSK 139 (361)
T ss_pred C----CCccccccCCCCee------ccceeEEEeccceeeEeecCcCceEEeccCc----cEEEEEEEeccc--ceehhh
Confidence 2 23466655 33111 0111122222223333 99999988865432 223333333322 23 11
Q ss_pred eecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE---EEECCCC-------------ceeeeeCCCCceEEeeccCcccc
Q psy4818 346 LIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD---LHDLNTG-------------KRLHSFPLDLGQITHISGRRKYN 409 (734)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~---~~dl~~g-------------~~~~~l~~~~g~v~~~~~~~d~~ 409 (734)
.+.-..+..+....|..++-++....-|+.-+++ +-+++.. +...+....-|.+.++.+++.+.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 1111113344555555545555555555543332 2222111 11111111135567788888898
Q ss_pred eEEEEEecCCCCceEEEEeC
Q psy4818 410 EVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 410 ~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.+.. ++..+...|.
T Consensus 220 ~lawv~----Hds~v~~~da 235 (361)
T KOG1523|consen 220 RLAWVG----HDSTVSFVDA 235 (361)
T ss_pred EeeEec----CCCceEEeec
Confidence 887654 3445777776
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.4 Score=43.24 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=106.5
Q ss_pred CeeEEEEEeCCCCC--eEEEeCCCCcCCCCcEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCc----ccccc
Q psy4818 113 NHSILYVQRNLTGS--TEVFLDPNKLSKDGTTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKD----YPEVL 185 (734)
Q Consensus 113 ~~~~l~~~~~~~g~--~~~l~d~~~~~~~~~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~----~~~~~ 185 (734)
.+..||+....+.. .+.++..++-+ +....+.++.|.- |-++|..++ .. .+.-|||+++|.. ++...
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns-~~~aPlTSFDWne~dp~~igtSS-iD----TTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNS-EFCAPLTSFDWNEVDPNLIGTSS-ID----TTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCccc-ccCCcccccccccCCcceeEeec-cc----CeEEEEEEeeccccceeeEEEe
Confidence 46778887643222 23334444321 1123466777765 445554433 22 5778899998732 22223
Q ss_pred cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC-CcEE
Q psy4818 186 KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC-GRYL 264 (734)
Q Consensus 186 ~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-G~~l 264 (734)
....+..++|+.+|..+|.+..- ...+...++.... ....|++.+....-...++|++. -+++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvga---------------DGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGA---------------DGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred cCcceeEEEeccCccceEEEecC---------------CCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHH
Confidence 33345789999988877665421 1256777776543 34567776653334556788774 5666
Q ss_pred EEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCC
Q psy4818 265 LVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNP 338 (734)
Q Consensus 265 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 338 (734)
+-... +.++|-++|+.- +. .++-+|-.+....... |.|....-+-. .|.+.+...||+...
T Consensus 259 ATf~~---dS~~V~iLDiR~-P~------tpva~L~~H~a~VNgIaWaPhS~~hict---aGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 259 ATFAM---DSNKVVILDIRV-PC------TPVARLRNHQASVNGIAWAPHSSSHICT---AGDDCQALIWDLQQM 320 (364)
T ss_pred hhhhc---CCceEEEEEecC-CC------cceehhhcCcccccceEecCCCCceeee---cCCcceEEEEecccc
Confidence 64432 237899999876 32 2333333333222223 88876644332 244567888998753
|
|
| >KOG2541|consensus | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.1 Score=43.76 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=51.0
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhc-CeEEEEEecccCCCCCchhhhccccccCCCchhHHHH-HHHHHHHcCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHF-NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA-AAEYMINKKYT 565 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~ 565 (734)
.|+||+ ||-.......++. .+.+++.+. |..|.+.++--| -...|.. ...+... +.+.+. +..-
T Consensus 24 ~P~ii~-HGigd~c~~~~~~-~~~q~l~~~~g~~v~~leig~g--~~~s~l~---------pl~~Qv~~~ce~v~-~m~~ 89 (296)
T KOG2541|consen 24 VPVIVW-HGIGDSCSSLSMA-NLTQLLEELPGSPVYCLEIGDG--IKDSSLM---------PLWEQVDVACEKVK-QMPE 89 (296)
T ss_pred CCEEEE-eccCcccccchHH-HHHHHHHhCCCCeeEEEEecCC--cchhhhc---------cHHHHHHHHHHHHh-cchh
Confidence 677665 8865554443332 344555432 888888876322 1112222 2334444 444443 4333
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCC
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPE 591 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~ 591 (734)
-++-.-++|.|.||+++=+++...++
T Consensus 90 lsqGynivg~SQGglv~Raliq~cd~ 115 (296)
T KOG2541|consen 90 LSQGYNIVGYSQGGLVARALIQFCDN 115 (296)
T ss_pred ccCceEEEEEccccHHHHHHHHhCCC
Confidence 45568999999999998888765443
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=93.70 E-value=3.6 Score=40.67 Aligned_cols=152 Identities=9% Similarity=0.091 Sum_probs=85.7
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCce
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGK 329 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~ 329 (734)
.+..++|||.-..++. ..+ -.+.|.+|++.. . ..+.+ +............ |+.||.+++..+. +..
T Consensus 29 sIS~l~FSP~~~~~~~-A~S--WD~tVR~wevq~-~-g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~----Dk~ 95 (347)
T KOG0647|consen 29 SISALAFSPQADNLLA-AGS--WDGTVRIWEVQN-S-GQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGC----DKQ 95 (347)
T ss_pred chheeEeccccCceEE-ecc--cCCceEEEEEec-C-Ccccc----hhhhccCCCeEEEEEccCCceEEeecc----CCc
Confidence 3457899995444442 222 225778888765 1 11111 1111222233333 9999977664333 345
Q ss_pred EEEEecCCCCCCCceEeecCCCCceeEEEEEeeCC--EEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcc
Q psy4818 330 VVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANN--KLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRK 407 (734)
Q Consensus 330 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d 407 (734)
+-.||+.++. ...+-.++ ..+..+.+..+. .++++.+-| ..|..||......+..+.+|.- ++.++. .
T Consensus 96 ~k~wDL~S~Q---~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWD--KTlKfWD~R~~~pv~t~~LPeR-vYa~Dv--~ 165 (347)
T KOG0647|consen 96 AKLWDLASGQ---VSQVAAHD--APVKTCHWVPGMNYQCLVTGSWD--KTLKFWDTRSSNPVATLQLPER-VYAADV--L 165 (347)
T ss_pred eEEEEccCCC---eeeeeecc--cceeEEEEecCCCcceeEecccc--cceeecccCCCCeeeeeeccce-eeehhc--c
Confidence 8889998875 45555454 344555555432 356665554 4799999977777777777743 334433 2
Q ss_pred cceEEEEEecCCCCceEEEEeC
Q psy4818 408 YNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 408 ~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+++..+. ..|..|+|
T Consensus 166 ~pm~vVata~----r~i~vynL 183 (347)
T KOG0647|consen 166 YPMAVVATAE----RHIAVYNL 183 (347)
T ss_pred CceeEEEecC----CcEEEEEc
Confidence 3334444433 35888998
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=93.50 E-value=5.1 Score=39.73 Aligned_cols=154 Identities=7% Similarity=0.109 Sum_probs=76.9
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceE
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKV 330 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l 330 (734)
.+....|-..|+.++-.+.+. .--+||+++|. .+..|+.....-...-.+-.++|++.+.++. .++|
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDR----TAnlwDVEtge--------~v~~LtGHd~ELtHcstHptQrLVvTsSrDt-TFRL 340 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDR----TANLWDVETGE--------VVNILTGHDSELTHCSTHPTQRLVVTSSRDT-TFRL 340 (481)
T ss_pred ceEehhhhcCcceeeeeeccc----cceeeeeccCc--------eeccccCcchhccccccCCcceEEEEeccCc-eeEe
Confidence 444566777888877554432 33478888842 2333333222222223344577888777653 4445
Q ss_pred EEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCc-eeeeeCCCCceEEeeccCcccc
Q psy4818 331 VTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGK-RLHSFPLDLGQITHISGRRKYN 409 (734)
Q Consensus 331 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~-~~~~l~~~~g~v~~~~~~~d~~ 409 (734)
||....- +-..++.+. ...+.++.+..+++ +++.+++ ..+.+|||.+=. .+..|... ..+..+..+....
T Consensus 341 --WDFReaI--~sV~VFQGH-tdtVTS~vF~~dd~-vVSgSDD--rTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~ 411 (481)
T KOG0300|consen 341 --WDFREAI--QSVAVFQGH-TDTVTSVVFNTDDR-VVSGSDD--RTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHP 411 (481)
T ss_pred --ccchhhc--ceeeeeccc-ccceeEEEEecCCc-eeecCCC--ceEEEeeeccccCcceeeecC-CccceeEeecCCc
Confidence 5554211 113455544 34455555555344 4444444 468999985422 22233222 2223333443333
Q ss_pred eEEEEEecCCCCceEEEEeCC
Q psy4818 410 EVFYGFTSFLQPGTIYHCNIP 430 (734)
Q Consensus 410 ~l~~~~ss~~~P~~~~~~d~~ 430 (734)
.+++ +..-..+.+||+.
T Consensus 412 iIAi----PhDNRqvRlfDln 428 (481)
T KOG0300|consen 412 IIAI----PHDNRQVRLFDLN 428 (481)
T ss_pred eEEe----ccCCceEEEEecC
Confidence 4443 2334578888983
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.2 Score=42.50 Aligned_cols=121 Identities=11% Similarity=0.095 Sum_probs=71.4
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC------cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK------DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~------~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
....+.|||.+.++|..+ |. ..|-|+=.+... .+...+.. .+..+.|.|++-.++-.+.|.
T Consensus 102 AAt~V~WsP~enkFAVgS---ga--r~isVcy~E~ENdWWVsKhikkPirS-tv~sldWhpnnVLlaaGs~D~------- 168 (361)
T KOG1523|consen 102 AATCVKWSPKENKFAVGS---GA--RLISVCYYEQENDWWVSKHIKKPIRS-TVTSLDWHPNNVLLAAGSTDG------- 168 (361)
T ss_pred ceeeEeecCcCceEEecc---Cc--cEEEEEEEecccceehhhhhCCcccc-ceeeeeccCCcceecccccCc-------
Confidence 367899999999998643 22 334444333322 11111222 235789999887666665433
Q ss_pred CcccccCCcEEEEEECCCCCCCC---------eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKD---------IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~---------~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.-+-...|+..+++..... .++.+.....++..++.|||+|..|++..++ +.+.+.|...
T Consensus 169 ----k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd----s~v~~~da~~ 237 (361)
T KOG1523|consen 169 ----KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD----STVSFVDAAG 237 (361)
T ss_pred ----ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC----CceEEeecCC
Confidence 1222245555665543211 1222222345688899999999999998754 5678888776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=93.38 E-value=6.2 Score=47.22 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=65.2
Q ss_pred eeEEeCCCCcEEEEEEeCCCC-ceEEEEEEECCCCCc--ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGS-DWNTLHIKDVDTGKD--YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~-~~~~l~v~dl~~g~~--~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..++|-.||+++|.+.-.... ....|+||+-+ |+. ..+...+. ...++|-|.|..|+-+....
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL-e~~l~WrPsG~lIA~~q~~~------------ 278 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL-EGALSWRPSGNLIASSQRLP------------ 278 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc-cCCccCCCCCCEEEEEEEcC------------
Confidence 358899999999988763322 36899999977 542 12223333 26899999999988876421
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
+ ...|......+-.-.. ..........-...+.|++|+..|++...
T Consensus 279 ~-~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 279 D-RHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred C-CcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 1 1234433332211001 11111111224567999999999998763
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=93.35 E-value=12 Score=40.96 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=43.0
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc--ccccc-ccCeeEEEcCCcEEEEEEE
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE--VLKNV-KFPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~--~~~~~-~~~~~~wSpDg~~l~y~~~ 207 (734)
+...+-...|-| |+.+..+.. |+ .+++.||+++++.+-. .++.. ..-+.+|.|+..-+|.+..
T Consensus 99 H~nAifDl~wap-ge~~lVsas--GD--sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 99 HKNAIFDLKWAP-GESLLVSAS--GD--STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ccceeEeeccCC-CceeEEEcc--CC--ceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc
Confidence 345677899999 877665553 43 7899999998875432 22222 2357889999887776654
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.84 Score=45.91 Aligned_cols=100 Identities=15% Similarity=0.035 Sum_probs=55.4
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHh-cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRH-FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
.+.|+||+ ||-......+++. .+.+++.. .|.-+.++. -|.+ . ++ ..-.+..+.+..+.+.|.+...
T Consensus 25 ~~~PvViw-HGlgD~~~~~~~~-~~~~~i~~~~~~pg~~v~-ig~~-~-----~~---s~~~~~~~Qv~~vce~l~~~~~ 92 (306)
T PLN02606 25 LSVPFVLF-HGFGGECSNGKVS-NLTQFLINHSGYPGTCVE-IGNG-V-----QD---SLFMPLRQQASIACEKIKQMKE 92 (306)
T ss_pred CCCCEEEE-CCCCcccCCchHH-HHHHHHHhCCCCCeEEEE-ECCC-c-----cc---ccccCHHHHHHHHHHHHhcchh
Confidence 45777666 9965444434433 34566652 255444444 2321 1 11 1112233445555666655333
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCC--ceeEEEE
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPE--LYGAALI 598 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~--~~~a~v~ 598 (734)
.. +-+-++|+|.||.+.=+++.+.|+ .++-.|+
T Consensus 93 L~-~G~naIGfSQGglflRa~ierc~~~p~V~nlIS 127 (306)
T PLN02606 93 LS-EGYNIVAESQGNLVARGLIEFCDNAPPVINYVS 127 (306)
T ss_pred hc-CceEEEEEcchhHHHHHHHHHCCCCCCcceEEE
Confidence 32 358999999999999999988776 2444444
|
|
| >KOG2100|consensus | Back alignment and domain information |
|---|
Probab=93.29 E-value=21 Score=41.86 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=42.9
Q ss_pred EEeCCCCcEEEEEEeCCCC----ceEEEEEEECCCCC-cccccccccccCeeEEEcCCcEEEEEEEec
Q psy4818 147 YAFSDNGKHFAYCLSKSGS----DWNTLHIKDVDTGK-DYPEVLKNVKFPSISWTHDHKGFFYNQYCD 209 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~g~----~~~~l~v~dl~~g~-~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~ 209 (734)
..+|||.+++++..+..-. -....+++++.++. .......+..+.-+.|||.|+.|+|+...+
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred cccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecc
Confidence 4889999999988764211 12356677887776 222223333346789999999999998754
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=11 Score=37.68 Aligned_cols=133 Identities=6% Similarity=0.002 Sum_probs=71.0
Q ss_pred CeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEE
Q psy4818 126 STEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFY 204 (734)
Q Consensus 126 ~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y 204 (734)
+.++.++..... +-+..+++.+|+||-+.|.-+.+ .+ .+|..++.++.-..+....+. +..++.|.-+|+.+ .
T Consensus 71 ~y~~~i~akpi~-g~~~nvS~LTynp~~rtLFav~n-~p---~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fv-i 144 (316)
T COG3204 71 EYRARIDAKPIL-GETANVSSLTYNPDTRTLFAVTN-KP---AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFV-I 144 (316)
T ss_pred CceEEEeccccc-cccccccceeeCCCcceEEEecC-CC---ceEEEEecCCceEEEecccccCChhHeEEecCCEEE-E
Confidence 445555544332 11233899999999997754433 22 467777765443222222221 23578888777522 2
Q ss_pred EEEecCCCCCCCCcccccCCcEEEEEECCCCCC----CC-eeEEec-CC-CCeeEEEEEEecCCcEEEEEEecCCCCceE
Q psy4818 205 NQYCDINGTADGTETTAHMGQKIYYHVLGTEQD----KD-IPVVEF-PN-GRSLGLHSEVTDCGRYLLVSTSNNTQGSDL 277 (734)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~----~~-~~v~~~-~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i 277 (734)
+. + +.++++.+.++.+.. .. ..-.+. .. +. -+.+++|+|..+.+++...+ ....|
T Consensus 145 ~d--E-------------R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~-GfEGlA~d~~~~~l~~aKEr--~P~~I 206 (316)
T COG3204 145 VD--E-------------RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNK-GFEGLAWDPVDHRLFVAKER--NPIGI 206 (316)
T ss_pred Ee--h-------------hcceEEEEEEcCCccEEeccceEEeccccCCCCc-CceeeecCCCCceEEEEEcc--CCcEE
Confidence 22 1 234666666554321 00 011111 11 22 35689999999998876543 33577
Q ss_pred EEEeC
Q psy4818 278 HYFDL 282 (734)
Q Consensus 278 ~~~d~ 282 (734)
|.++.
T Consensus 207 ~~~~~ 211 (316)
T COG3204 207 FEVTQ 211 (316)
T ss_pred EEEec
Confidence 77763
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=92.87 E-value=26 Score=41.76 Aligned_cols=123 Identities=21% Similarity=0.186 Sum_probs=65.9
Q ss_pred eeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecC
Q psy4818 192 SISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNN 271 (734)
Q Consensus 192 ~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 271 (734)
++.|--||+.++....... .+...+.+++... .-+ ...++. ......++|-|.|..|+-.....
T Consensus 200 ~IsWRgDg~~fAVs~~~~~-----------~~~RkirV~drEg-~Ln---s~se~~-~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESE-----------TGTRKIRVYDREG-ALN---STSEPV-EGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred eEEEccCCcEEEEEEEecc-----------CCceeEEEecccc-hhh---cccCcc-cccccceeecCCCCeEeeeeecC
Confidence 4899999998887654321 1224566666552 111 111111 11334689999999998766543
Q ss_pred CCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 272 TQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 272 ~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
+ .++|..+.-.+...+.++-..+. +...... .|..+++-|++.+.. ..+..|.+|.+.+
T Consensus 264 s-d~~IvffErNGL~hg~f~l~~p~-----de~~ve~L~Wns~sdiLAv~~~~-~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 264 S-DSDIVFFERNGLRHGEFVLPFPL-----DEKEVEELAWNSNSDILAVVTSN-LENSLVQLWTTGN 323 (1265)
T ss_pred C-CCcEEEEecCCccccccccCCcc-----cccchheeeecCCCCceeeeecc-cccceEEEEEecC
Confidence 3 35788888776433322211111 1111112 388888877765543 2334466666543
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.2 Score=49.45 Aligned_cols=118 Identities=12% Similarity=0.100 Sum_probs=75.3
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC--cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK--DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~--~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
++..+.|||--....++..++| .|.+||+.--. .++.+.....+.-..|+|++.+|+-...|
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG----~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD------------ 241 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSG----YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD------------ 241 (839)
T ss_pred hhhceeeccCCCceEEEecCCc----eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC------------
Confidence 4778999997766666666665 58899986432 12223333333568999988877765532
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.+|.+|+.++.........+.. . -..-+.|-|+-++.+-+.+... ...|++||+.-
T Consensus 242 ----K~vkiWd~t~~~~~~~~tInTi-a--pv~rVkWRP~~~~hLAtcsmv~-dtsV~VWDvrR 297 (839)
T KOG0269|consen 242 ----KMVKIWDMTDSRAKPKHTINTI-A--PVGRVKWRPARSYHLATCSMVV-DTSVHVWDVRR 297 (839)
T ss_pred ----ccEEEEeccCCCccceeEEeec-c--eeeeeeeccCccchhhhhhccc-cceEEEEeecc
Confidence 2788888887655444333321 1 2346889999887664443322 26899999976
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.5 Score=46.12 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=38.6
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEE
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELI 318 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~ 318 (734)
-+.++++-|||..|++.+. ++++++|...| .....+..+.+..+.+ |+.||++++
T Consensus 14 ci~d~afkPDGsqL~lAAg-----~rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-----SRLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC-----CEEEEEeCCCc--------ccccccccccceEEEEEEccCCceec
Confidence 3456899999999987542 68999999884 2334444444545554 899988765
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=92.75 E-value=15 Score=42.03 Aligned_cols=238 Identities=11% Similarity=0.060 Sum_probs=130.1
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc---ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP---EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~---~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..+.+++|.|.--+|.-+.. + ..|.+||-.=|..+. +..+.+ .++.|.|++- ||.+.-|
T Consensus 10 sRvKglsFHP~rPwILtslH-s----G~IQlWDYRM~tli~rFdeHdGpV--Rgv~FH~~qp-lFVSGGD---------- 71 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLH-S----GVIQLWDYRMGTLIDRFDEHDGPV--RGVDFHPTQP-LFVSGGD---------- 71 (1202)
T ss_pred ccccceecCCCCCEEEEeec-C----ceeeeehhhhhhHHhhhhccCCcc--ceeeecCCCC-eEEecCC----------
Confidence 45788999999999987664 3 358888876665433 233433 5889999874 4443322
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
...|.+|+..+ .+++|+...+..++..+.|.+.=-||+ +.++...|.+|+..+.. ..-.
T Consensus 72 -----DykIkVWnYk~----rrclftL~GHlDYVRt~~FHheyPWIl----SASDDQTIrIWNwqsr~--------~iav 130 (1202)
T KOG0292|consen 72 -----DYKIKVWNYKT----RRCLFTLLGHLDYVRTVFFHHEYPWIL----SASDDQTIRIWNWQSRK--------CIAV 130 (1202)
T ss_pred -----ccEEEEEeccc----ceehhhhccccceeEEeeccCCCceEE----EccCCCeEEEEeccCCc--------eEEE
Confidence 24677777654 457787777777888888888877876 22334678888887721 1222
Q ss_pred eeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCc---------------eEeecCCCCce--------
Q psy4818 299 VIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNW---------------KTLIPEDENRT-------- 354 (734)
Q Consensus 299 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~---------------~~l~~~~~~~~-------- 354 (734)
++.+....-. .|.|-.+.++ ...- +..|-+||+.+-...+. ..|+.+. +.+
T Consensus 131 ltGHnHYVMcAqFhptEDlIV-SaSL---DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~-DaVVK~VLEGH 205 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTEDLIV-SASL---DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQT-DAVVKHVLEGH 205 (1202)
T ss_pred EecCceEEEeeccCCccceEE-Eecc---cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCc-Ceeeeeeeccc
Confidence 3322211111 2666545333 3222 45677888765221000 0122111 111
Q ss_pred ---eEEEEEeeCCEEEEEEEeCCceeEEEEECCCCce--eeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 355 ---LDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKR--LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 355 ---~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~--~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.++.+..---++++..++ .++.+|..+.-+. +.....+.+.|+++-+.|..+ ++++.+.. ..+.+||+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DD--RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsED---ksirVwDm 279 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADD--RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSED---KSIRVWDM 279 (1202)
T ss_pred ccccceEEecCCcceEEecCCc--ceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCC---ccEEEEec
Confidence 2233332212356665555 3455555432222 122233455666777777653 55554433 36788888
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=92.52 E-value=7.8 Score=37.21 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=40.0
Q ss_pred eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 362 ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+.+++.. |...+|.||+++|+..+.+......+..+.......+++ +. ..-+.+.++|.
T Consensus 125 ~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG---~EDGtvRvWd~ 185 (325)
T KOG0649|consen 125 SENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SG---AEDGTVRVWDT 185 (325)
T ss_pred CCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ec---CCCccEEEEec
Confidence 346666654 557999999999998888887755565665533333443 22 22356788888
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=92.49 E-value=17 Score=38.75 Aligned_cols=109 Identities=20% Similarity=0.196 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCC
Q psy4818 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCE 340 (734)
Q Consensus 261 G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 340 (734)
+..+++.... ..++.+|+++|+ ..|..-. ........+++++|+.+. +..|+.+|.++++.
T Consensus 241 ~~~vy~~~~~----g~l~a~d~~tG~-------~~W~~~~----~~~~~p~~~~~~vyv~~~----~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 241 GGQVYAVSYQ----GRVAALDLRSGR-------VLWKRDA----SSYQGPAVDDNRLYVTDA----DGVVVALDRRSGSE 301 (377)
T ss_pred CCEEEEEEcC----CEEEEEECCCCc-------EEEeecc----CCccCceEeCCEEEEECC----CCeEEEEECCCCcE
Confidence 4455543322 478999988742 1222111 111113345777887653 35699999987641
Q ss_pred CCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC
Q psy4818 341 KNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD 395 (734)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~ 395 (734)
.|+. ............. .++.+++.. .+ ..|+.+|..+|+.+.++..+
T Consensus 302 -~W~~--~~~~~~~~ssp~i-~g~~l~~~~-~~--G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 302 -LWKN--DELKYRQLTAPAV-VGGYLVVGD-FE--GYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred -EEcc--ccccCCccccCEE-ECCEEEEEe-CC--CEEEEEECCCCCEEEEEEcC
Confidence 2321 0111111222222 336666543 34 47999999899987666544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=92.46 E-value=20 Score=39.40 Aligned_cols=220 Identities=11% Similarity=0.076 Sum_probs=120.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
-.+.++.+.|-.-++.-+.- +| ++.+||-+|...+. .......+.+..|-+--++|+..++|
T Consensus 14 dRVKsVd~HPtePw~la~Ly-nG----~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD------------ 76 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALY-NG----DVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDD------------ 76 (794)
T ss_pred CceeeeecCCCCceEEEeee-cC----eeEEEecccceeeeeeeecccchhhheeeeccceEEEecCC------------
Confidence 34778889999988876664 33 57788877765432 11222222345565656667666543
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.+|.+.+.+|.. .+..|+. ++.++..++..|.--+++- + ++...|.+||-+.+ ....+.+
T Consensus 77 ----~~IrVfnynt~e--kV~~FeA--H~DyIR~iavHPt~P~vLt-s---SDDm~iKlW~we~~--------wa~~qtf 136 (794)
T KOG0276|consen 77 ----MQIRVFNYNTGE--KVKTFEA--HSDYIRSIAVHPTLPYVLT-S---SDDMTIKLWDWENE--------WACEQTF 136 (794)
T ss_pred ----ceEEEEecccce--eeEEeec--cccceeeeeecCCCCeEEe-c---CCccEEEEeeccCc--------eeeeeEE
Confidence 268888888764 4556654 5668889999998888762 2 23356777777661 2222233
Q ss_pred ccccceEE-E-EEecC-CeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 301 PGMDHHHE-I-IANNG-PELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 301 ~~~~~~~~-~-~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
.+...-.. . +.|.. .+++ .+.. +..+-+|.+.++.+ -..+-.+. ..+-.--....+++-|+.+..+. ..
T Consensus 137 eGH~HyVMqv~fnPkD~ntFa-S~sL---DrTVKVWslgs~~~--nfTl~gHe-kGVN~Vdyy~~gdkpylIsgaDD-~t 208 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFA-SASL---DRTVKVWSLGSPHP--NFTLEGHE-KGVNCVDYYTGGDKPYLISGADD-LT 208 (794)
T ss_pred cCcceEEEEEEecCCCcccee-eeec---cccEEEEEcCCCCC--ceeeeccc-cCcceEEeccCCCcceEEecCCC-ce
Confidence 32221111 1 55543 3333 2221 33477777755432 23444443 22322222233344444333332 46
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
+.+||..+...++.|..+...|+.+.+.|
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecC
Confidence 88999987777777776544454444443
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.14 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.4
Q ss_pred CCcEEEEEcChHHHHHHHHHh
Q psy4818 567 PKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~ 587 (734)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999988876
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.49 Score=59.86 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=61.0
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.++++||+.+... .|.. +...|. .++.|+.++.+|.+.. ......++++.+.+...+.... ..
T Consensus 1068 ~~~l~~lh~~~g~~~--~~~~-l~~~l~-~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~ 1132 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW--QFSV-LSRYLD-PQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PH 1132 (1296)
T ss_pred CCCeEEecCCCCchH--HHHH-HHHhcC-CCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CC
Confidence 466888899766542 3332 344555 3799999999884321 1112345555544333332211 12
Q ss_pred CcEEEEEcChHHHHHHHHHhc---CCCceeEEEEcCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQ---RPELYGAALILVG 601 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~---~p~~~~a~v~~~~ 601 (734)
.+..++|||+||.++..++.+ .++....+++..+
T Consensus 1133 ~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1133 GPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 479999999999999999874 4676666665543
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=92.31 E-value=3.5 Score=39.48 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=47.5
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCcee
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~ 389 (734)
..|....+++.. ++..+|.+|++++. ++..+.+. .+.+-.+.....+.-+++..++| .+.+||+++++..
T Consensus 122 ldP~enSi~~Ag----GD~~~y~~dlE~G~---i~r~~rGH-tDYvH~vv~R~~~~qilsG~EDG--tvRvWd~kt~k~v 191 (325)
T KOG0649|consen 122 LDPSENSILFAG----GDGVIYQVDLEDGR---IQREYRGH-TDYVHSVVGRNANGQILSGAEDG--TVRVWDTKTQKHV 191 (325)
T ss_pred eccCCCcEEEec----CCeEEEEEEecCCE---EEEEEcCC-cceeeeeeecccCcceeecCCCc--cEEEEecccccee
Confidence 566667777643 45679999999887 56666655 23333333322233455666664 6889999999876
Q ss_pred eeeC
Q psy4818 390 HSFP 393 (734)
Q Consensus 390 ~~l~ 393 (734)
+.|.
T Consensus 192 ~~ie 195 (325)
T KOG0649|consen 192 SMIE 195 (325)
T ss_pred EEec
Confidence 6653
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=17 Score=40.81 Aligned_cols=169 Identities=10% Similarity=0.023 Sum_probs=87.3
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
.+..+++|+||+.+|+... +...+++... |...+....+.....++|.++| +++-... .
T Consensus 344 ~~~s~avS~~g~~~A~~~~----~~~~l~~~~~--g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~-g------------- 402 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG----SRTTLYTVSP--GQPARALTSGSTLTRPSFSPQD-WVWTAGP-G------------- 402 (573)
T ss_pred cccceeecCCCceEEEecC----CCcEEEEecC--CCcceeeecCCCccCCcccCCC-CEEEeeC-C-------------
Confidence 4678999999999999732 2246776654 2222222333334788999988 5654332 1
Q ss_pred CCcEEEEEECC-CCCCC--CeeEE--ecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC---CCCCcccCCC
Q psy4818 223 MGQKIYYHVLG-TEQDK--DIPVV--EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS---LPDGKISGKF 294 (734)
Q Consensus 223 ~~~~l~~~~l~-t~~~~--~~~v~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~---~~~~~l~~~~ 294 (734)
.+..|.+..-. ++... .+... ...+. .-+..+..|+||-.+++....+. ..+|++.-+.. |....|+.
T Consensus 403 ~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g-~~I~~lrvSrDG~R~Avi~~~~g-~~~V~va~V~R~~~G~P~~L~~-- 478 (573)
T PRK13614 403 GNGRIVAYRPTGVAEGAQAPTVTLTADWLAG-RTVKELRVSREGVRALVISEQNG-KSRVQVAGIVRNEDGTPRELTA-- 478 (573)
T ss_pred CCceEEEEecCCCcccccccceeecccccCC-CeeEEEEECCCccEEEEEEEeCC-ccEEEEEEEEeCCCCCeEEccC--
Confidence 12244443321 21110 00011 11111 13678999999999998875433 24577644322 11112211
Q ss_pred CceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 295 PLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 295 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
...+.. ...... .|..+ ..|++++...+.+..++++.+..+.
T Consensus 479 -~~~~~~-~~~~~sl~W~~~-~sl~V~~~~~~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 479 -PITLAA-DSDADTGAWVGD-STVVVTKASATSNVVPELLSVDAGQ 521 (573)
T ss_pred -ceeccc-CCCcceeEEcCC-CEEEEEeccCCCcceEEEEEeCCCC
Confidence 111111 111222 27665 4577776554556667888885443
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.6 Score=44.15 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=69.8
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH 305 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~ 305 (734)
.|.+.++.+..+-..++..... ..++|+| ..+.+..+++ ...+|++|+.... .++..-.+....
T Consensus 211 sIvLyD~R~~~Pl~KVi~~mRT-----N~IswnP-eafnF~~a~E---D~nlY~~DmR~l~-------~p~~v~~dhvsA 274 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTMRT-----NTICWNP-EAFNFVAANE---DHNLYTYDMRNLS-------RPLNVHKDHVSA 274 (433)
T ss_pred ceEEEecccCCccceeeeeccc-----cceecCc-cccceeeccc---cccceehhhhhhc-------ccchhhccccee
Confidence 6788888776654444544322 2589999 5565554433 3679999987621 121111111112
Q ss_pred eEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 306 HHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 306 ~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
...+ +||-|+.|+-.+- +-.|-.+.+..+.. +++.....-..+-.+.+.-+.+.+++.++++ .+.+|.-
T Consensus 275 V~dVdfsptG~Efvsgsy----DksIRIf~~~~~~S---RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~--nvRlWka 344 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSY----DKSIRIFPVNHGHS---RDIYHTKRMQHVFCVKYSMDSKYIISGSDDG--NVRLWKA 344 (433)
T ss_pred EEEeccCCCcchhccccc----cceEEEeecCCCcc---hhhhhHhhhheeeEEEEeccccEEEecCCCc--ceeeeec
Confidence 2223 8999998773322 22355555544331 3333322112233344454477888877775 4556644
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=92.00 E-value=18 Score=38.15 Aligned_cols=204 Identities=8% Similarity=0.073 Sum_probs=108.6
Q ss_pred EEEeeEEeCCCCc-EEEEEEeCCCCceEEEEEEECCCCCccc-----ccccccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 142 TALKLYAFSDNGK-HFAYCLSKSGSDWNTLHIKDVDTGKDYP-----EVLKNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 142 ~~~~~~~~SPDG~-~la~~~~~~g~~~~~l~v~dl~~g~~~~-----~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
..+...+|.|-.. .|+-+-+.. .+|-+||+.+.+.-. .+.....++.+.|+|-...-+|.+.-
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy------- 255 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKG----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY------- 255 (498)
T ss_pred cceEEEEecccCcceEEEEccCC----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc-------
Confidence 4577899999887 555444444 479999996443211 12333345788999977655555432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
...|.+.++.+...+. ++...++..++.+..++-+...+++..+- ...-++|+.++... -
T Consensus 256 --------DGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~----G~f~~iD~R~~~s~------~ 315 (498)
T KOG4328|consen 256 --------DGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNV----GNFNVIDLRTDGSE------Y 315 (498)
T ss_pred --------CceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecc----cceEEEEeecCCcc------c
Confidence 1268888888776543 33333345577888898888887775433 24556777662211 0
Q ss_pred ceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCC--CCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 296 LKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNP--CEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 296 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
+...........-.+.|--.+++..+. .+..+..||+..- +.+.+.-.+++. ..+....+.+.++. +++...+
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s---~D~T~kIWD~R~l~~K~sp~lst~~Hr-rsV~sAyFSPs~gt-l~TT~~D 390 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATAS---LDQTAKIWDLRQLRGKASPFLSTLPHR-RSVNSAYFSPSGGT-LLTTCQD 390 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecc---cCcceeeeehhhhcCCCCcceeccccc-ceeeeeEEcCCCCc-eEeeccC
Confidence 111111111111124555444443332 2344667887642 211122233333 23333334444455 5555554
Q ss_pred CceeEEEEEC
Q psy4818 374 VRSVMDLHDL 383 (734)
Q Consensus 374 ~~~~l~~~dl 383 (734)
..|.+||-
T Consensus 391 --~~IRv~ds 398 (498)
T KOG4328|consen 391 --NEIRVFDS 398 (498)
T ss_pred --CceEEeec
Confidence 56788875
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.8 Score=42.49 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=78.4
Q ss_pred CcEEEeeEEeCC--CCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc---ccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 140 GTTALKLYAFSD--NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV---KFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 140 ~~~~~~~~~~SP--DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~---~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
+...+.+-+||| ||..+|-..+ .+|+-||+.|.+..- .+... ....+.+.|+-+.++.+..|+
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d------~tl~~~D~RT~~~~~-sI~dAHgq~vrdlDfNpnkq~~lvt~gDd----- 236 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSD------STLQFWDLRTMKKNN-SIEDAHGQRVRDLDFNPNKQHILVTCGDD----- 236 (370)
T ss_pred ccceecccccCCCCccceEEEeCC------CcEEEEEccchhhhc-chhhhhcceeeeccCCCCceEEEEEcCCC-----
Confidence 456677889999 9999886553 469999998765321 12222 235678889887777666443
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeC
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDL 282 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~ 282 (734)
..|.+|+...... .+++.+++..|...+.+.|--..|+++.++. +.+-+.-.
T Consensus 237 ----------gyvriWD~R~tk~---pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD---s~V~Lsca 288 (370)
T KOG1007|consen 237 ----------GYVRIWDTRKTKF---PVQELPGHSHWVWAVRFNPEHDQLILSGGSD---SAVNLSCA 288 (370)
T ss_pred ----------ccEEEEeccCCCc---cccccCCCceEEEEEEecCccceEEEecCCC---ceeEEEec
Confidence 2577787765432 4667778888999999999999998876442 44444443
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.71 Score=45.77 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc---ccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 138 KDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV---KFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 138 ~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~---~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
+.+...+..++++-+|..||-++..+ .-|+++|..+|+.+.+...++ ....++||||+++|+..++..
T Consensus 178 ~AH~s~Iacv~Ln~~Gt~vATaStkG----TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg----- 248 (346)
T KOG2111|consen 178 NAHDSDIACVALNLQGTLVATASTKG----TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG----- 248 (346)
T ss_pred EcccCceeEEEEcCCccEEEEeccCc----EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-----
Q ss_pred CCCcccccCCcEEEEEEC
Q psy4818 215 DGTETTAHMGQKIYYHVL 232 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l 232 (734)
.|++..+
T Consensus 249 -----------TlHiF~l 255 (346)
T KOG2111|consen 249 -----------TLHIFSL 255 (346)
T ss_pred -----------eEEEEEe
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=5.1 Score=40.86 Aligned_cols=117 Identities=22% Similarity=0.231 Sum_probs=73.4
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC------Cccccc--ccccccCeeEEEcCCcEEEEEEEecCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG------KDYPEV--LKNVKFPSISWTHDHKGFFYNQYCDING 212 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g------~~~~~~--~~~~~~~~~~wSpDg~~l~y~~~~~~~~ 212 (734)
+.-+..+.||.+|++|| +|.+.....||+++.- +++... ....++..++|.- +.+++|...
T Consensus 56 ~GCiNAlqFS~N~~~L~-----SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~----- 124 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLA-----SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGE----- 124 (609)
T ss_pred ccccceeeeccCCeEEe-----ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCC-----
Confidence 33467899999999998 4556678888887532 222211 1112335566743 456666542
Q ss_pred CCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 213 TADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
+..+|..|++.+.+. +-|+...++.+-++....+|-...++.++ ....+.+||...
T Consensus 125 ----------~~~~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t----~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 125 ----------RWGTVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVT----RAKLVSFIDNRD 180 (609)
T ss_pred ----------CcceeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEe----cCceEEEEeccC
Confidence 234799999998763 45666655555667788888766555432 225778888766
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=91.69 E-value=6.1 Score=44.04 Aligned_cols=184 Identities=15% Similarity=0.099 Sum_probs=95.5
Q ss_pred CCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEE
Q psy4818 164 GSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV 243 (734)
Q Consensus 164 g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~ 243 (734)
|+...+|+||++++|+.+....+.. ..--+-.-++..++..+.+. .|.+|++.+.+ ++.
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~-~~V~~v~~~~~~lvsgs~d~----------------~v~VW~~~~~~----cl~ 365 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHT-GPVNCVQLDEPLLVSGSYDG----------------TVKVWDPRTGK----CLK 365 (537)
T ss_pred ccCCceEEEEeccCcceEEEecccc-ccEEEEEecCCEEEEEecCc----------------eEEEEEhhhce----eee
Confidence 5667899999999998765443221 11123334566666666532 57777776543 344
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCC
Q psy4818 244 EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTK 323 (734)
Q Consensus 244 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 323 (734)
....+...+..+. .|+....+..+ ....|.+||+.++. +++ ..+. +...........++ +++....
T Consensus 366 sl~gH~~~V~sl~--~~~~~~~~Sgs---~D~~IkvWdl~~~~-~c~------~tl~-~h~~~v~~l~~~~~-~Lvs~~a 431 (537)
T KOG0274|consen 366 SLSGHTGRVYSLI--VDSENRLLSGS---LDTTIKVWDLRTKR-KCI------HTLQ-GHTSLVSSLLLRDN-FLVSSSA 431 (537)
T ss_pred eecCCcceEEEEE--ecCcceEEeee---eccceEeecCCchh-hhh------hhhc-CCcccccccccccc-eeEeccc
Confidence 4334454555554 45523334332 22679999999831 111 1111 11111111223333 3333332
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
...|..||...++ ....+...+...+..+... +..++.+..++ .+.+||+.+|+..+.+
T Consensus 432 ---D~~Ik~WD~~~~~---~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~--~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 ---DGTIKLWDAEEGE---CLRTLEGRHVGGVSALALG--KEEILCSSDDG--SVKLWDLRSGTLIRTL 490 (537)
T ss_pred ---cccEEEeecccCc---eeeeeccCCcccEEEeecC--cceEEEEecCC--eeEEEecccCchhhhh
Confidence 3368889988766 3444444212222323222 35566666664 6777899888876554
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=91.61 E-value=6.6 Score=38.26 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=69.8
Q ss_pred EEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceE
Q psy4818 252 GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKV 330 (734)
Q Consensus 252 ~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l 330 (734)
..+.++|+|+++++.+.. ..+|+++.++. ....+. -..+....+.++. .|+.....+++.+.. +.+
T Consensus 161 ~ns~~~snd~~~~~~Vgd----s~~Vf~y~id~-~sey~~----~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd----g~~ 227 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGD----SRRVFRYAIDD-ESEYIE----NIYEAPTSDHGFYNSFSENDLQFAVVFQD----GTC 227 (344)
T ss_pred eeeeEEcCCCceEEEecC----CCcceEEEeCC-ccceee----eeEecccCCCceeeeeccCcceEEEEecC----CcE
Confidence 346899999999986542 36788887776 222110 0112222233444 387776666665543 347
Q ss_pred EEEecCCCCCCCceEee--cCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 331 VTINLNNPCEKNWKTLI--PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 331 ~~~d~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
..+|+..-.. ...... .+.....+..+.+.-.+-+-+..-..+.+.+.+.|+.+++..+.|-
T Consensus 228 ~I~DVR~~~t-pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 228 AIYDVRNMAT-PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred EEEEeccccc-chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 7888764220 011111 1223445566655533332222223456789999998888655554
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=91.60 E-value=2.5 Score=47.65 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=72.5
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEE-CC-CCCccc-ccccc--cccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKD-VD-TGKDYP-EVLKN--VKFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~d-l~-~g~~~~-~~~~~--~~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
+.+.+...++||.|+++|-+-++ | +|.||. .. .+...+ ....+ .....++||+||.+|+-...
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~d-G----rI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~------- 271 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSD-G----RILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR------- 271 (792)
T ss_pred hcccceeEEeccccceEEEeccC-C----cEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc-------
Confidence 44556779999999999965443 3 477665 33 122221 12222 24578999999987765432
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
-.-+.+|.++|+..+ .+ |.-..-+..+.+|||+..-++... .+.|.++.+.+
T Consensus 272 ---------E~VLv~Wq~~T~~kq-fL----PRLgs~I~~i~vS~ds~~~sl~~~----DNqI~li~~~d 323 (792)
T KOG1963|consen 272 ---------EGVLVLWQLETGKKQ-FL----PRLGSPILHIVVSPDSDLYSLVLE----DNQIHLIKASD 323 (792)
T ss_pred ---------ceEEEEEeecCCCcc-cc----cccCCeeEEEEEcCCCCeEEEEec----CceEEEEeccc
Confidence 125788999988632 22 222235678899999998776543 26777777654
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.27 Score=52.54 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=50.6
Q ss_pred HHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC
Q psy4818 510 RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR 589 (734)
Q Consensus 510 ~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~ 589 (734)
+.+.|.+.||..- .+++| .+-+|+.+.. ....-+..+...++.+.+.. -.+|.|+||||||+++...+...
T Consensus 70 li~~L~~~GY~~~-~~l~~---~pYDWR~~~~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~~~ 140 (389)
T PF02450_consen 70 LIENLEKLGYDRG-KDLFA---APYDWRLSPA--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQWM 140 (389)
T ss_pred HHHHHHhcCcccC-CEEEE---Eeechhhchh--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHHhc
Confidence 4566777787642 12333 3335555432 11223455555666555432 57899999999999999998876
Q ss_pred CC------ceeEEEEcCC
Q psy4818 590 PE------LYGAALILVG 601 (734)
Q Consensus 590 p~------~~~a~v~~~~ 601 (734)
+. .+++.|+.++
T Consensus 141 ~~~~W~~~~i~~~i~i~~ 158 (389)
T PF02450_consen 141 PQEEWKDKYIKRFISIGT 158 (389)
T ss_pred cchhhHHhhhhEEEEeCC
Confidence 43 3566776554
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.33 Score=53.21 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=53.1
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHhhhCCC-CCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 654 TLVLTGDHDDRVPPLHSYKFIATLQEKIGSL-PYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 654 ~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
||+.||..|..|++..+..+++++.+..... ..-..-++|.+.||.+|-.........+.+..+.+|+++
T Consensus 356 LI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 356 LILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred EEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999998873210 000224689999999998765533345777778888885
|
It also includes several bacterial homologues of unknown function. |
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.74 Score=34.49 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=28.8
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEecc--ccCCCCCcEEEEecCCCCCcCCc
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVG--ALRNRRNPVIIYGYGGYGVSVLP 504 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~--~~~~~~~P~vv~~hGg~~~~~~~ 504 (734)
..+|.+|...+++.||.-+.+.=+.++. ....++.|+|++.||-..++..+
T Consensus 7 ~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 7 KHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp HTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred HcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 3577899999999999877776665544 23456789999999987776543
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=16 Score=40.69 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=86.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++++|+||+.+|+... . ..+++....+.. .. .........++|.++| +++-.. +. .
T Consensus 336 ~~s~avS~dg~~~A~v~~-~----~~l~vg~~~~~~-~~-~~~~~~Lt~PS~d~~g-~vWtv~-~g-------------~ 393 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA-S----GVWSVGDGDRDA-VL-LDTRPGLVAPSLDAQG-YVWSTP-AS-------------D 393 (557)
T ss_pred cccceEcCCCceEEEEcC-C----ceEEEecCCCcc-ee-eccCCccccCcCcCCC-CEEEEe-CC-------------C
Confidence 467899999999999843 1 267776554222 11 1222234688999988 565433 21 1
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC--CCCCcccCCCCceeeec
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS--LPDGKISGKFPLKTVIP 301 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~l~~ 301 (734)
...+.... .++... ..-..... ..-+..+..|+||-.+++..... ...+|++.-+.. +....|+ ...+.+..
T Consensus 394 ~~~l~~~~-~~G~~~-~v~v~~~~-~~~I~~lrvSrDG~R~Avi~~~~-g~~~V~va~V~R~~~~P~~L~--~~p~~l~~ 467 (557)
T PRK13615 394 PRGLVAWG-PDGVGH-PVAVSWTA-TGRVVSLEVARDGARVLVQLETG-AGPQLLVASIVRDGGVPTSLT--TTPLELLA 467 (557)
T ss_pred ceEEEEec-CCCceE-EeeccccC-CCeeEEEEeCCCccEEEEEEecC-CCCEEEEEEEEeCCCcceEee--eccEEccc
Confidence 12222221 111111 11111111 22467899999999999887643 334666643322 1111221 11122222
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
........ |..+ ..|++++...+.+..++.+.+.++.
T Consensus 468 ~l~~v~sl~W~~~-~~laVl~~~~~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 468 SPGTPLDATWVDE-LDVATLTLAPDGERQVELHQVGGPS 505 (557)
T ss_pred CcCcceeeEEcCC-CEEEEEeccCCCCceEEEEECCCcc
Confidence 22222222 7765 4577776444555678999988654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.16 E-value=21 Score=37.15 Aligned_cols=148 Identities=15% Similarity=0.044 Sum_probs=78.3
Q ss_pred eeEEEEEeCCCCCeEEEeCCCCcC-------C-CCcEEEeeEEeCCCCcEEEEEEeCC----CCc-------eEEEEEEE
Q psy4818 114 HSILYVQRNLTGSTEVFLDPNKLS-------K-DGTTALKLYAFSDNGKHFAYCLSKS----GSD-------WNTLHIKD 174 (734)
Q Consensus 114 ~~~l~~~~~~~g~~~~l~d~~~~~-------~-~~~~~~~~~~~SPDG~~la~~~~~~----g~~-------~~~l~v~d 174 (734)
.+.|++.+..+...+.+-=|..+. . ....++.+++++|||+.|..+.... |.. ...|+.+|
T Consensus 111 ~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d 190 (326)
T PF13449_consen 111 PPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYD 190 (326)
T ss_pred CCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEec
Confidence 467888775432223331244331 1 1345688999999999766655332 211 25678888
Q ss_pred CCC-CCc-----ccccc-----cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCC-------
Q psy4818 175 VDT-GKD-----YPEVL-----KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQ------- 236 (734)
Q Consensus 175 l~~-g~~-----~~~~~-----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~------- 236 (734)
..+ |+. .+... .....+.+.+-+|++.|+.-+.-.. ......+||.+++....
T Consensus 191 ~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~---------~~~~~~ri~~v~l~~at~~~~~~~ 261 (326)
T PF13449_consen 191 PKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSP---------GTGNYKRIYRVDLSDATDVPGIES 261 (326)
T ss_pred CCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCC---------CccceEEEEEEEcccccccccccc
Confidence 876 422 11111 2334578999999985554443211 01234578888775331
Q ss_pred --------CCCeeEEecCCC---CeeEEEEEEec--CCcEEEEEEec
Q psy4818 237 --------DKDIPVVEFPNG---RSLGLHSEVTD--CGRYLLVSTSN 270 (734)
Q Consensus 237 --------~~~~~v~~~~~~---~~~~~~~~~Sp--DG~~l~~~~~~ 270 (734)
....++++.... ...+.+++|-| ||+..++..++
T Consensus 262 l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsD 308 (326)
T PF13449_consen 262 LEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSD 308 (326)
T ss_pred cccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEEC
Confidence 111223322111 23456788876 77775555544
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=91.12 E-value=9.8 Score=41.34 Aligned_cols=111 Identities=16% Similarity=0.189 Sum_probs=61.6
Q ss_pred EEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-E-EEecCCeEEEEeCCCCCCce
Q psy4818 252 GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-I-IANNGPELIVKTTKNAPKGK 329 (734)
Q Consensus 252 ~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~-~s~dg~~l~~~s~~~~~~~~ 329 (734)
+.++.|.-+|.||+.+...+ ....|++..+.....+ .+++. ..+... . |.|-..++++.+.+ .
T Consensus 524 i~~vtWHrkGDYlatV~~~~-~~~~VliHQLSK~~sQ-----~PF~k----skG~vq~v~FHPs~p~lfVaTq~-----~ 588 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDS-GNKSVLIHQLSKRKSQ-----SPFRK----SKGLVQRVKFHPSKPYLFVATQR-----S 588 (733)
T ss_pred cceeeeecCCceEEEeccCC-CcceEEEEeccccccc-----Cchhh----cCCceeEEEecCCCceEEEEecc-----c
Confidence 45789999999999776543 3368888888762211 12211 111111 2 66665556655543 3
Q ss_pred EEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECC
Q psy4818 330 VVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLN 384 (734)
Q Consensus 330 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~ 384 (734)
|..+|+.... -.+.|.++- ..+..+.+. .|+.|++.... ..+..+|+.
T Consensus 589 vRiYdL~kqe--lvKkL~tg~--kwiS~msihp~GDnli~gs~d---~k~~WfDld 637 (733)
T KOG0650|consen 589 VRIYDLSKQE--LVKKLLTGS--KWISSMSIHPNGDNLILGSYD---KKMCWFDLD 637 (733)
T ss_pred eEEEehhHHH--HHHHHhcCC--eeeeeeeecCCCCeEEEecCC---CeeEEEEcc
Confidence 7777876532 134455544 234444443 34566655433 367788774
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=91.07 E-value=24 Score=37.58 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=51.1
Q ss_pred cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 313 NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 313 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
.++.+|+.+.. ..|+.+|.++++. .|..-. .. ...... .++++|+.. . ...|+.+|..+|+.+-..
T Consensus 240 ~~~~vy~~~~~----g~l~a~d~~tG~~-~W~~~~----~~-~~~p~~-~~~~vyv~~-~--~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 240 DGGQVYAVSYQ----GRVAALDLRSGRV-LWKRDA----SS-YQGPAV-DDNRLYVTD-A--DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ECCEEEEEEcC----CEEEEEECCCCcE-EEeecc----CC-ccCceE-eCCEEEEEC-C--CCeEEEEECCCCcEEEcc
Confidence 35667765542 4699999987651 232211 11 111222 347777664 2 257999999889865433
Q ss_pred C-CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 393 P-LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 393 ~-~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. .......... ..++.+++... -..++.+|.
T Consensus 306 ~~~~~~~~ssp~--i~g~~l~~~~~----~G~l~~~d~ 337 (377)
T TIGR03300 306 DELKYRQLTAPA--VVGGYLVVGDF----EGYLHWLSR 337 (377)
T ss_pred ccccCCccccCE--EECCEEEEEeC----CCEEEEEEC
Confidence 2 1211121221 13445554422 247899998
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.94 E-value=19 Score=37.53 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=62.9
Q ss_pred EEEEecCCcEEEEEEecCC--CCceEEEEeCCCCCCCcccCCCCceeee---c--cccceEE--EEEecCCeEEEEeCCC
Q psy4818 254 HSEVTDCGRYLLVSTSNNT--QGSDLHYFDLHSLPDGKISGKFPLKTVI---P--GMDHHHE--IIANNGPELIVKTTKN 324 (734)
Q Consensus 254 ~~~~SpDG~~l~~~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~l~---~--~~~~~~~--~~s~dg~~l~~~s~~~ 324 (734)
++++.+||.+++-...... ....|+.++.++.....+.....+..-. . ..+.+.+ .+++||+.||......
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence 5677777776542211100 1168999998742212221000010000 0 1122333 3899999888877542
Q ss_pred ----CC--------CceEEEEecCCCCCCCceE-eecCC------CCceeEEEEEeeCCEEEEEEEeC-----CceeEEE
Q psy4818 325 ----AP--------KGKVVTINLNNPCEKNWKT-LIPED------ENRTLDVVAAVANNKLIVHYIQN-----VRSVMDL 380 (734)
Q Consensus 325 ----~~--------~~~l~~~d~~~~~~~~~~~-l~~~~------~~~~~~~~~~~~~~~l~~~~~~~-----~~~~l~~ 380 (734)
+. ..+|+.+|..+... .+.. ..+-. ....+..+...+++++++..+.. ...+|+.
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~-~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGE-PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCc-cceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 11 15788888875220 0122 22221 13344445455556777766652 2246666
Q ss_pred EECC
Q psy4818 381 HDLN 384 (734)
Q Consensus 381 ~dl~ 384 (734)
+++.
T Consensus 248 v~l~ 251 (326)
T PF13449_consen 248 VDLS 251 (326)
T ss_pred EEcc
Confidence 6663
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.31 Score=46.23 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=55.1
Q ss_pred CeEEEEEecccCCCCCch-hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC----C--
Q psy4818 518 NGIYAIPNIRGGGELGED-WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR----P-- 590 (734)
Q Consensus 518 G~~v~~~~~rG~~~~g~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~----p-- 590 (734)
-..|++|-||-..-+..- -............+.|+.+|.++.+++. -+-..++|.|||.|+.+...++... |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 456889999974432211 0001111123356899999999877763 2334799999999999999998764 2
Q ss_pred -CceeEEEEcCCcch
Q psy4818 591 -ELYGAALILVGALD 604 (734)
Q Consensus 591 -~~~~a~v~~~~~~d 604 (734)
.+++|.+.+.++..
T Consensus 124 ~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 124 KRLVAAYLIGYPVTV 138 (207)
T ss_pred hhhheeeecCccccH
Confidence 24566666666654
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.4 Score=42.86 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 588 (734)
.+.+...++.+.++.- +.+|.+.|||.||.++..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 3455566666655543 4789999999999999888653
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.4 Score=47.46 Aligned_cols=84 Identities=17% Similarity=0.021 Sum_probs=49.4
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHH-HHHHHHcCCCCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA-AEYMINKKYTKP 567 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~ 567 (734)
|.|+++|++.|.. +.|.+ +...|.. -.-|+....+|-+. ......+++|..+. ++.+.+. -..
T Consensus 1 ~pLF~fhp~~G~~--~~~~~-L~~~l~~-~~~v~~l~a~g~~~----------~~~~~~~l~~~a~~yv~~Ir~~--QP~ 64 (257)
T COG3319 1 PPLFCFHPAGGSV--LAYAP-LAAALGP-LLPVYGLQAPGYGA----------GEQPFASLDDMAAAYVAAIRRV--QPE 64 (257)
T ss_pred CCEEEEcCCCCcH--HHHHH-HHHHhcc-CceeeccccCcccc----------cccccCCHHHHHHHHHHHHHHh--CCC
Confidence 5688899875543 23332 2344543 36677778777322 11223445565543 3333221 122
Q ss_pred CcEEEEEcChHHHHHHHHHhc
Q psy4818 568 KYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~ 588 (734)
....+.|+|+||.++..++.+
T Consensus 65 GPy~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 65 GPYVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred CCEEEEeeccccHHHHHHHHH
Confidence 469999999999999999865
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.52 Score=50.33 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=64.0
Q ss_pred CCCCcEEEEecCCCCCcCCc-----------------cccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLP-----------------TFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~-----------------~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
..+.|+|++..||||.+... .+.-+-..|+.. ..++.+|.+-|.||..+-..+... ....
T Consensus 98 p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~--adLvFiDqPvGTGfS~a~~~e~~~-d~~~ 174 (498)
T COG2939 98 PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF--ADLVFIDQPVGTGFSRALGDEKKK-DFEG 174 (498)
T ss_pred CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC--CceEEEecCcccCccccccccccc-chhc
Confidence 45799999999999875432 220011245543 457778988777787541111111 1112
Q ss_pred chhHHHHHHHHHHH----cCCCCCCcEEEEEcChHHHHHHHHHh----c--CCC---ceeEEEEcCC
Q psy4818 548 CFDDFQAAAEYMIN----KKYTKPKYITIMGGSNGGLLVGACLN----Q--RPE---LYGAALILVG 601 (734)
Q Consensus 548 ~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~~~~~~~----~--~p~---~~~a~v~~~~ 601 (734)
.-.|+....+.+.+ ... .-.+..|+|.||||+-+..+|. + .+. +++++...++
T Consensus 175 ~~~D~~~~~~~f~~~fp~~~r-~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng 240 (498)
T COG2939 175 AGKDVYSFLRLFFDKFPHYAR-LLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNG 240 (498)
T ss_pred cchhHHHHHHHHHHHHHHHhh-hcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCC
Confidence 23455554444333 221 2246899999999998777653 2 122 3556666666
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=90.72 E-value=22 Score=38.66 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=56.6
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC-CCCceeEEEEEee--CCEEEEEEEeCCceeEEEEECCCC
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-DENRTLDVVAAVA--NNKLIVHYIQNVRSVMDLHDLNTG 386 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~~~dl~~g 386 (734)
|+.||=.+.+-+. .+.++.+|+.+.. ..++.. .....+..+.|.+ +...+++... ..+.+||-.+|
T Consensus 236 F~d~gL~~aVGts----~G~v~iyDLRa~~----pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk---~~~kiWd~~~G 304 (703)
T KOG2321|consen 236 FRDDGLHVAVGTS----TGSVLIYDLRASK----PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK---RILKIWDECTG 304 (703)
T ss_pred ecCCceeEEeecc----CCcEEEEEcccCC----ceeecccCCccceeeecccccCCCceEEecch---HHhhhcccccC
Confidence 6666655655443 3469999998764 222222 2122233333322 1234444332 45888998899
Q ss_pred ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 387 KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 387 ~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+....+.. ...+..++.-+++..+++...+..- ..+|+=++
T Consensus 305 k~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m-~~yyiP~L 345 (703)
T KOG2321|consen 305 KPMASIEP-TSDLNDFCFVPGSGMFFTANESSKM-HTYYIPSL 345 (703)
T ss_pred Cceeeccc-cCCcCceeeecCCceEEEecCCCcc-eeEEcccc
Confidence 87555542 2335566666777766665554332 23454444
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=90.59 E-value=17 Score=35.09 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=48.1
Q ss_pred CCcEEEEEEeCCCCceEEEEEEECCCCCc--cccccccc--ccCeeEEEc--CCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 152 NGKHFAYCLSKSGSDWNTLHIKDVDTGKD--YPEVLKNV--KFPSISWTH--DHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 152 DG~~la~~~~~~g~~~~~l~v~dl~~g~~--~~~~~~~~--~~~~~~wSp--Dg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
-|++||-.+++ ..|.|+.+..... +..+..+- ....++|.. -|.-|+-++.+.
T Consensus 22 ygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg---------------- 80 (299)
T KOG1332|consen 22 YGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG---------------- 80 (299)
T ss_pred hcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc----------------
Confidence 47888876643 3577777665332 22222221 123456655 566666666543
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEE
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLV 266 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~ 266 (734)
+|-+|+-+.+.-+....+. .+.....+++|-|.+--+.+
T Consensus 81 kVIiWke~~g~w~k~~e~~--~h~~SVNsV~wapheygl~L 119 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHA--AHSASVNSVAWAPHEYGLLL 119 (299)
T ss_pred eEEEEecCCCchhhhhhhh--hhcccceeecccccccceEE
Confidence 6777776665443322222 23334556778776544433
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.19 E-value=1 Score=46.09 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=65.6
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEe--ccc-CCCCCchhhhccccccCCCchhHHHHHHHHHHHc
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN--IRG-GGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~--~rG-~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 562 (734)
...-++|++||-...-...-| ..++.+...|+-.+.+= -+- +.-+| |... ++.-...-.++...+++|.+.
T Consensus 114 ~~k~vlvFvHGfNntf~dav~--R~aqI~~d~g~~~~pVvFSWPS~g~l~~---Yn~D-reS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDAVY--RTAQIVHDSGNDGVPVVFSWPSRGSLLG---YNYD-RESTNYSRPALERLLRYLATD 187 (377)
T ss_pred CCCeEEEEEcccCCchhHHHH--HHHHHHhhcCCCcceEEEEcCCCCeeee---cccc-hhhhhhhHHHHHHHHHHHHhC
Confidence 445699999995332221111 13455555554433322 221 11111 1110 122233456788889998876
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhc----C----CCceeEEEEcCCcchhcc
Q psy4818 563 KYTKPKYITIMGGSNGGLLVGACLNQ----R----PELYGAALILVGALDMLR 607 (734)
Q Consensus 563 ~~~d~~ri~i~G~S~GG~~~~~~~~~----~----p~~~~a~v~~~~~~d~~~ 607 (734)
.- -.+|.|+.||||.++++.++.| . +..|+-+|+.+|=.|..-
T Consensus 188 ~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DV 238 (377)
T COG4782 188 KP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDV 238 (377)
T ss_pred CC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhh
Confidence 43 3589999999999999987643 2 335788888888666543
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.2 Score=46.79 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=52.8
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT 177 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~ 177 (734)
++|+.++-.-+....++..|++-.+. .|..+- .+ +++...+..++|||||++|+-++.+ .+.-++....
T Consensus 535 ~~gnliASaCKS~~~ehAvI~lw~t~--~W~~~~---~L-~~HsLTVT~l~FSpdg~~LLsvsRD-----Rt~sl~~~~~ 603 (764)
T KOG1063|consen 535 PTGNLIASACKSSLKEHAVIRLWNTA--NWLQVQ---EL-EGHSLTVTRLAFSPDGRYLLSVSRD-----RTVSLYEVQE 603 (764)
T ss_pred CCCCEEeehhhhCCccceEEEEEecc--chhhhh---ee-cccceEEEEEEECCCCcEEEEeecC-----ceEEeeeeec
Confidence 44555554444444566666665432 221110 11 2345678899999999998865532 3455555432
Q ss_pred CCcc--c--ccccccc-cCeeEEEcCCcEEEEEEE
Q psy4818 178 GKDY--P--EVLKNVK-FPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 178 g~~~--~--~~~~~~~-~~~~~wSpDg~~l~y~~~ 207 (734)
+... . -.....+ +....|+||+++++-.+.
T Consensus 604 ~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR 638 (764)
T KOG1063|consen 604 DIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR 638 (764)
T ss_pred ccchhhhhccccccceEEEEcccCcccceeEEecC
Confidence 2110 0 0111111 256789999999554443
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.94 Score=47.35 Aligned_cols=97 Identities=19% Similarity=0.080 Sum_probs=56.5
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeE---EEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGI---YAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
.+|++||. +.... .|.. +..++...|+. +..+.+.+...-+ . .....+.+.+-++.+... ..
T Consensus 61 pivlVhG~-~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~---~-------~~~~~~ql~~~V~~~l~~--~g 125 (336)
T COG1075 61 PIVLVHGL-GGGYG-NFLP-LDYRLAILGWLTNGVYAFELSGGDGTY---S-------LAVRGEQLFAYVDEVLAK--TG 125 (336)
T ss_pred eEEEEccC-cCCcc-hhhh-hhhhhcchHHHhcccccccccccCCCc---c-------ccccHHHHHHHHHHHHhh--cC
Confidence 56788996 22221 2222 22345666776 7777776531111 1 111123333434443333 22
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCC--CceeEEEEcCC
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRP--ELYGAALILVG 601 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p--~~~~a~v~~~~ 601 (734)
..++.++|||+||.++-.++...+ ..++.++...+
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~t 162 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGT 162 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEecc
Confidence 368999999999999999888877 67777777654
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=89.88 E-value=11 Score=38.99 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=52.5
Q ss_pred ceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe
Q psy4818 166 DWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE 244 (734)
Q Consensus 166 ~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~ 244 (734)
+-+.+.++.+..|.... ..+.. ....++||||++.|.+.-.++ .|++-.....- ++--|-
T Consensus 130 D~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDE----------------kIRvs~ypa~f--~Iesfc 190 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDE----------------KIRVSRYPATF--VIESFC 190 (390)
T ss_pred CceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCc----------------eEEEEecCccc--chhhhc
Confidence 34667777766555433 22322 336889999998888765443 46555443221 111111
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 245 FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 245 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
. .+..|+..++..++-- |+ ++++.+.|++||..+|
T Consensus 191 l-GH~eFVS~isl~~~~~-Ll----S~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 191 L-GHKEFVSTISLTDNYL-LL----SGSGDKTLRLWDITSG 225 (390)
T ss_pred c-ccHhheeeeeeccCce-ee----ecCCCCcEEEEecccC
Confidence 1 1233666666655433 22 2234478999999885
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.9 Score=47.20 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=68.2
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
.+...+||+||.+|. +|.....+.+|-++|++..-...-+...-.+.||||+.....+..|.
T Consensus 253 ~V~~L~fS~~G~~Ll-----SGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN------------- 314 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLL-----SGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDN------------- 314 (792)
T ss_pred ccceeEEecCCceEe-----ecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCc-------------
Confidence 477899999999887 45556789999999987321111222236899999999777776543
Q ss_pred CCcEEEEEECCCCCCCCeeEEe----cC----CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVE----FP----NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~----~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
+|.+....+-..+ ..|-. .+ ....+...+..+|--+.+++.... ..|-.+|+-+
T Consensus 315 ---qI~li~~~dl~~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~----g~vQ~ydl~t 376 (792)
T KOG1963|consen 315 ---QIHLIKASDLEIK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP----GHVQFYDLYT 376 (792)
T ss_pred ---eEEEEeccchhhh-hhccCccCCCccccccccccceeEEEcCCCCceeecCCC----ceEEEEeccc
Confidence 5555544221111 01110 00 012355677888866666654322 3555566654
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=89.62 E-value=24 Score=35.38 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=97.2
Q ss_pred EEEeeEEeCCCCc--EEEEEEeCCCCceEEEEEEECCCCCcc---cccccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 142 TALKLYAFSDNGK--HFAYCLSKSGSDWNTLHIKDVDTGKDY---PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 142 ~~~~~~~~SPDG~--~la~~~~~~g~~~~~l~v~dl~~g~~~---~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
..+....|+|+-. .|. +|.+...|.+|++..=+.+ ..... .+..++-.|.|| |+.+...+
T Consensus 84 gsitaL~F~~~~S~shLl-----S~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHPS~K-LALsVg~D------- 148 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLL-----SGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHPSGK-LALSVGGD------- 148 (362)
T ss_pred cceEEEEecCCcchhhee-----eecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecCCCc-eEEEEcCC-------
Confidence 3467778887774 333 2444567888887543222 11222 246788889886 55544322
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
..+..|++-.+...- +......+ ..+.|+|.|.+.++... +.|-++.+++ . .+ +
T Consensus 149 --------~~lr~WNLV~Gr~a~--v~~L~~~a---t~v~w~~~Gd~F~v~~~-----~~i~i~q~d~-A--~v-----~ 202 (362)
T KOG0294|consen 149 --------QVLRTWNLVRGRVAF--VLNLKNKA---TLVSWSPQGDHFVVSGR-----NKIDIYQLDN-A--SV-----F 202 (362)
T ss_pred --------ceeeeehhhcCccce--eeccCCcc---eeeEEcCCCCEEEEEec-----cEEEEEeccc-H--hH-----h
Confidence 257777776554332 22222222 34899999998776543 3444444443 0 01 1
Q ss_pred eeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee--CCEEEEEEEeC
Q psy4818 297 KTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA--NNKLIVHYIQN 373 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 373 (734)
..+..... .... |. ++..+++-.+ +..+-.+|.+... ....+..+. ..+.++.+.. ...++++++.+
T Consensus 203 ~~i~~~~r-~l~~~~l-~~~~L~vG~d----~~~i~~~D~ds~~--~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 203 REIENPKR-ILCATFL-DGSELLVGGD----NEWISLKDTDSDT--PLTEFLAHE--NRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred hhhhcccc-ceeeeec-CCceEEEecC----CceEEEeccCCCc--cceeeecch--hheeeeEEEecCCceEEEEeccC
Confidence 11111111 1111 22 3444443222 2347777766533 134455554 2344444333 24677777777
Q ss_pred CceeEEEEECC
Q psy4818 374 VRSVMDLHDLN 384 (734)
Q Consensus 374 ~~~~l~~~dl~ 384 (734)
| .|.+||+.
T Consensus 273 G--~I~vWd~~ 281 (362)
T KOG0294|consen 273 G--FIKVWDID 281 (362)
T ss_pred c--eEEEEEcc
Confidence 5 67777774
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.51 E-value=23 Score=34.97 Aligned_cols=203 Identities=10% Similarity=0.075 Sum_probs=97.9
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc----ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP----EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~----~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
++..-|||.. +..+.+ ..|..+|.++++..+ ..-...+....+|.++| .|+|+......
T Consensus 108 giv~gpdg~~--Witd~~----~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G~y---------- 170 (353)
T COG4257 108 GIVVGPDGSA--WITDTG----LAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG-NLWFTGQIGAY---------- 170 (353)
T ss_pred eEEECCCCCe--eEecCc----ceeEEecCcccceEEeecccccCCCcccceeeCCCc-cEEEeeccccc----------
Confidence 5778899974 444422 267777887776432 22222233578888888 47887653210
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
-+|+- ....+.+|..+... --.+++.+|||+.- |.+.. .+-|-++|..++-.+.+.. ...+..
T Consensus 171 --------GrLdP-a~~~i~vfpaPqG~-gpyGi~atpdGsvw-yasla---gnaiaridp~~~~aev~p~---P~~~~~ 233 (353)
T COG4257 171 --------GRLDP-ARNVISVFPAPQGG-GPYGICATPDGSVW-YASLA---GNAIARIDPFAGHAEVVPQ---PNALKA 233 (353)
T ss_pred --------eecCc-ccCceeeeccCCCC-CCcceEECCCCcEE-EEecc---ccceEEcccccCCcceecC---CCcccc
Confidence 01111 11233444443222 12467889999853 33222 2556667665532111110 000111
Q ss_pred cccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEe-ecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 302 GMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL-IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 302 ~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
.....|+.--.++++. + ....+|+++|..... |.+. ++.. ...-..+...+.+++.+ .. -+...|.+
T Consensus 234 ---gsRriwsdpig~~wit-t--wg~g~l~rfdPs~~s---W~eypLPgs-~arpys~rVD~~grVW~-se-a~agai~r 301 (353)
T COG4257 234 ---GSRRIWSDPIGRAWIT-T--WGTGSLHRFDPSVTS---WIEYPLPGS-KARPYSMRVDRHGRVWL-SE-ADAGAIGR 301 (353)
T ss_pred ---cccccccCccCcEEEe-c--cCCceeeEeCccccc---ceeeeCCCC-CCCcceeeeccCCcEEe-ec-cccCceee
Confidence 1112343222335544 2 234679999987655 6543 2332 22222343443234333 22 22356788
Q ss_pred EECCCCceeeeeCCC
Q psy4818 381 HDLNTGKRLHSFPLD 395 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~ 395 (734)
+|.++-. .+.+..+
T Consensus 302 fdpeta~-ftv~p~p 315 (353)
T COG4257 302 FDPETAR-FTVLPIP 315 (353)
T ss_pred cCcccce-EEEecCC
Confidence 8875443 3555554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=32 Score=38.71 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=52.8
Q ss_pred ceEEEEeCCCCCCCcccCCCCceeeecc--ccceEEEEEecCCeEEEEeCCCCC-----CceEEEEecCCCCCCCceEee
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKTVIPG--MDHHHEIIANNGPELIVKTTKNAP-----KGKVVTINLNNPCEKNWKTLI 347 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~l~~~--~~~~~~~~s~dg~~l~~~s~~~~~-----~~~l~~~d~~~~~~~~~~~l~ 347 (734)
+.++.+|..++ .|..+..- .......... ++.||+....... ...++.+|..+.. |..+-
T Consensus 406 ~~v~~yd~~t~---------~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~---W~~~~ 472 (534)
T PHA03098 406 KTVECFSLNTN---------KWSKGSPLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNK---WTELS 472 (534)
T ss_pred ceEEEEeCCCC---------eeeecCCCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCc---eeeCC
Confidence 67899998873 23322110 1111222333 4568877643211 2348999987765 87654
Q ss_pred cCCCCceeEEEEEeeCCEEEEEEEeCC---ceeEEEEECCCCce
Q psy4818 348 PEDENRTLDVVAAVANNKLIVHYIQNV---RSVMDLHDLNTGKR 388 (734)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~l~~~dl~~g~~ 388 (734)
+.............+ +.+|+....+. ...++.+|+.+.++
T Consensus 473 ~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 473 SLNFPRINASLCIFN-NKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCcccccceEEEEC-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 322111111222234 77877665432 24788999876665
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=89.28 E-value=31 Score=36.20 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=103.4
Q ss_pred eeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecC
Q psy4818 192 SISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNN 271 (734)
Q Consensus 192 ~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 271 (734)
.++|.-+-+.|+.+..- ...|.+|++.+++....+-. +.+-+..+.|.|.--.++++.+
T Consensus 248 ~Ls~n~~~~nVLaSgsa---------------D~TV~lWD~~~g~p~~s~~~----~~k~Vq~l~wh~~~p~~LLsGs-- 306 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSA---------------DKTVKLWDVDTGKPKSSITH----HGKKVQTLEWHPYEPSVLLSGS-- 306 (463)
T ss_pred HHHhccccceeEEecCC---------------CceEEEEEcCCCCcceehhh----cCCceeEEEecCCCceEEEecc--
Confidence 46777777777776532 23799999999876544322 2224567899998776666543
Q ss_pred CCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE--EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC
Q psy4818 272 TQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE 349 (734)
Q Consensus 272 ~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 349 (734)
....+.+.|... +. + ....|. +.+... .|.|.....+|.+.. ++.|+-+|+.......| .+-.+
T Consensus 307 -~D~~V~l~D~R~-~~-~--s~~~wk-----~~g~VEkv~w~~~se~~f~~~td---dG~v~~~D~R~~~~~vw-t~~AH 372 (463)
T KOG0270|consen 307 -YDGTVALKDCRD-PS-N--SGKEWK-----FDGEVEKVAWDPHSENSFFVSTD---DGTVYYFDIRNPGKPVW-TLKAH 372 (463)
T ss_pred -ccceEEeeeccC-cc-c--cCceEE-----eccceEEEEecCCCceeEEEecC---CceEEeeecCCCCCcee-EEEec
Confidence 335777888764 11 0 012232 112222 388877766666654 35699999876542223 33344
Q ss_pred CCCceeEEEEEeeC-CEEEEEEEeCCceeEEEEECCCCceeeeeC---CCCceEEeeccCcccceEEEEEecCCCCceEE
Q psy4818 350 DENRTLDVVAAVAN-NKLIVHYIQNVRSVMDLHDLNTGKRLHSFP---LDLGQITHISGRRKYNEVFYGFTSFLQPGTIY 425 (734)
Q Consensus 350 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~---~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~ 425 (734)
. ..+.++.+... ..++.+...+ ..+.+|++. +...+... +..|...++...++-. ..+++.+.. +.+.
T Consensus 373 d--~~ISgl~~n~~~p~~l~t~s~d--~~Vklw~~~-~~~~~~v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k--~~~~ 444 (463)
T KOG0270|consen 373 D--DEISGLSVNIQTPGLLSTASTD--KVVKLWKFD-VDSPKSVKEHSFKLGRLHCFALDPDVA-FTLAFGGEK--AVLR 444 (463)
T ss_pred c--CCcceEEecCCCCcceeecccc--ceEEEEeec-CCCCcccccccccccceeecccCCCcc-eEEEecCcc--ceEE
Confidence 3 24455544321 2344444333 467777773 32212221 1133444555555543 223333322 2566
Q ss_pred EEeC
Q psy4818 426 HCNI 429 (734)
Q Consensus 426 ~~d~ 429 (734)
++|+
T Consensus 445 vwd~ 448 (463)
T KOG0270|consen 445 VWDI 448 (463)
T ss_pred Eeec
Confidence 6666
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=89.19 E-value=42 Score=37.56 Aligned_cols=236 Identities=14% Similarity=0.132 Sum_probs=118.4
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc---cccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN---VKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~---~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
++..++..+.|.-..++|. ++|.+| -|.||=+-.|....+.+.+ .-+.+.+|..||..|..+-.|..-
T Consensus 69 GH~~sV~vvTWNe~~QKLT-tSDt~G----lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav---- 139 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQKLT-TSDTSG----LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV---- 139 (1189)
T ss_pred cCcceEEEEEecccccccc-ccCCCc----eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE----
Confidence 4566788899998888876 344443 5777777777643332221 123688999999999887654310
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
..-+....+||-.++.. .....+.||+|.+.++|.... .++.++|..+.-..++.
T Consensus 140 --IVGsvdGNRIwgKeLkg---------------~~l~hv~ws~D~~~~Lf~~an----ge~hlydnqgnF~~Kl~---- 194 (1189)
T KOG2041|consen 140 --IVGSVDGNRIWGKELKG---------------QLLAHVLWSEDLEQALFKKAN----GETHLYDNQGNFERKLE---- 194 (1189)
T ss_pred --EEEeeccceecchhcch---------------heccceeecccHHHHHhhhcC----CcEEEecccccHHHhhh----
Confidence 00011122344222211 123468899999998874322 56677776552111111
Q ss_pred ceeeecc------cc----------ceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEE
Q psy4818 296 LKTVIPG------MD----------HHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVA 359 (734)
Q Consensus 296 ~~~l~~~------~~----------~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~ 359 (734)
....+.. +. +.+.++-||--.+++.-.+ | +-+|++-.- ..+ .++-.. +..+-+..
T Consensus 195 ~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n-G-r~QiMR~eN-D~~-----Pvv~dt-gm~~vgak 265 (1189)
T KOG2041|consen 195 KDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN-G-RMQIMRSEN-DPE-----PVVVDT-GMKIVGAK 265 (1189)
T ss_pred hceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC-c-eehhhhhcC-CCC-----CeEEec-ccEeecce
Confidence 1111110 00 0001122333333332221 1 222333211 111 112222 12233445
Q ss_pred EeeCCEEEEEEEeC-------CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecC
Q psy4818 360 AVANNKLIVHYIQN-------VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSF 418 (734)
Q Consensus 360 ~~~~~~l~~~~~~~-------~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~ 418 (734)
|..++.++.....+ ....+..++. -|+....+..|...|+++++...+-++++...|+
T Consensus 266 Wnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsf 330 (1189)
T KOG2041|consen 266 WNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSF 330 (1189)
T ss_pred ecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecce
Confidence 55445544433211 1236777776 5887788877756678888876666666666654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.97 E-value=11 Score=37.48 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=41.4
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC----------ccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK----------DYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~----------~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
.+.+.-+|++++-.. ..++|+++-++.+. .+..+.. +..+.+++|+|..++|++....
T Consensus 133 ~Ieyig~n~fvi~dE-----R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr------ 201 (316)
T COG3204 133 TIEYIGGNQFVIVDE-----RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER------ 201 (316)
T ss_pred HeEEecCCEEEEEeh-----hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc------
Confidence 456666776554221 22456666554432 1111222 5557899999999999998753
Q ss_pred CCCcccccCCcEEEEEECC
Q psy4818 215 DGTETTAHMGQKIYYHVLG 233 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~ 233 (734)
.|..||.++.+
T Consensus 202 --------~P~~I~~~~~~ 212 (316)
T COG3204 202 --------NPIGIFEVTQS 212 (316)
T ss_pred --------CCcEEEEEecC
Confidence 35678877743
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.85 Score=50.13 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=56.8
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+...+....|||||++++ .|.+...+.+||+.-|+...+-. ..+....+.+.|-. |.-...
T Consensus 153 ~~~vv~~l~lsP~Gr~v~-----~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e----~Lla~G--------- 214 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVA-----SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE----VLLAPG--------- 214 (825)
T ss_pred CcceeEEEeecCCCceee-----ccCCcceeeeecccccccccccccccccccccccCchh----hhhccC---------
Confidence 345577899999999988 45567899999999888765433 11222333333322 111110
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEE
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLL 265 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~ 265 (734)
.....+.++++.+-+ +|-....+..-+.+..|+|||+.++
T Consensus 215 ---s~d~tv~f~dletfe----~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 215 ---SSDRTVRFWDLETFE----VISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred ---CCCceeeeeccceeE----EeeccCCccCCceeeeecCCceeee
Confidence 112256666665421 2222221222345678999999766
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=38 Score=36.36 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=52.9
Q ss_pred ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCce
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRT 354 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 354 (734)
..++.+|+.+|. ..|..-... ......+++.+|+.+. +.+|+.+|.++++. .|+.-. .....
T Consensus 266 g~l~ald~~tG~-------~~W~~~~~~----~~~~~~~~~~vy~~~~----~g~l~ald~~tG~~-~W~~~~--~~~~~ 327 (394)
T PRK11138 266 GNLVALDLRSGQ-------IVWKREYGS----VNDFAVDGGRIYLVDQ----NDRVYALDTRGGVE-LWSQSD--LLHRL 327 (394)
T ss_pred CeEEEEECCCCC-------EEEeecCCC----ccCcEEECCEEEEEcC----CCeEEEEECCCCcE-EEcccc--cCCCc
Confidence 478888988742 123221111 1112345778887654 34699999987641 232111 01112
Q ss_pred eEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCC
Q psy4818 355 LDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL 394 (734)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~ 394 (734)
....... ++.+|+.. .+ ..|+.+|..+|+.+.+...
T Consensus 328 ~~sp~v~-~g~l~v~~-~~--G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 328 LTAPVLY-NGYLVVGD-SE--GYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ccCCEEE-CCEEEEEe-CC--CEEEEEECCCCCEEEEEEc
Confidence 2222233 36776653 33 3799999999987655543
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=88.32 E-value=31 Score=34.89 Aligned_cols=147 Identities=13% Similarity=0.059 Sum_probs=78.9
Q ss_pred EEEEEeCCCCceEEEEEEECCCCCc-cc---ccccccccCeeEEEcCCcE-EEEEEEecCCCCCCCCcccccCCcEEEEE
Q psy4818 156 FAYCLSKSGSDWNTLHIKDVDTGKD-YP---EVLKNVKFPSISWTHDHKG-FFYNQYCDINGTADGTETTAHMGQKIYYH 230 (734)
Q Consensus 156 la~~~~~~g~~~~~l~v~dl~~g~~-~~---~~~~~~~~~~~~wSpDg~~-l~y~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (734)
-+|+. .|+.+.+||-.+.+++.. ++ +......+...+|+=|... =-|... .++..-|++.
T Consensus 56 ~vfat--vG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~-------------~G~~GvIrVi 120 (385)
T KOG1034|consen 56 QVFAT--VGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA-------------GGYLGVIRVI 120 (385)
T ss_pred ceEEE--eCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe-------------ecceeEEEEE
Confidence 44444 244556666666655432 11 1222233467788777652 111111 1223367777
Q ss_pred ECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc----cce
Q psy4818 231 VLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM----DHH 306 (734)
Q Consensus 231 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~----~~~ 306 (734)
++-+.+-...++- +...+..+.+.|+.-.|++..+.+ ..|.+|++.+. .-..++.+. +..
T Consensus 121 d~~~~~~~~~~~g----hG~sINeik~~p~~~qlvls~SkD---~svRlwnI~~~---------~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 121 DVVSGQCSKNYRG----HGGSINEIKFHPDRPQLVLSASKD---HSVRLWNIQTD---------VCVAVFGGVEGHRDEV 184 (385)
T ss_pred ecchhhhccceec----cCccchhhhcCCCCCcEEEEecCC---ceEEEEeccCC---------eEEEEecccccccCcE
Confidence 7766543322221 111334577889998888877543 57889999882 122333332 223
Q ss_pred EEE-EEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 307 HEI-IANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 307 ~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
.++ |+.||++|+ + .|-+..|..|++..
T Consensus 185 LSvD~~~~gd~i~--S--cGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 185 LSVDFSLDGDRIA--S--CGMDHSLKLWRLNV 212 (385)
T ss_pred EEEEEcCCCCeee--c--cCCcceEEEEecCh
Confidence 334 888988655 2 34456688877763
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=87.96 E-value=0.66 Score=42.28 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCC
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRP 590 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p 590 (734)
...+|.++|||+||.++..++.+..
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 4568999999999999999877643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=87.84 E-value=6.1 Score=37.98 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=64.4
Q ss_pred CcEEEeeEEeCCC---C-----------cEEEEEEeCCCCceEEEEEEECCCCCc-----ccccccccccCeeEEEcCCc
Q psy4818 140 GTTALKLYAFSDN---G-----------KHFAYCLSKSGSDWNTLHIKDVDTGKD-----YPEVLKNVKFPSISWTHDHK 200 (734)
Q Consensus 140 ~~~~~~~~~~SPD---G-----------~~la~~~~~~g~~~~~l~v~dl~~g~~-----~~~~~~~~~~~~~~wSpDg~ 200 (734)
+..++.+++|.|- | ++++ +|.-.+.+.||+.+.+.- +....+.+ ..++|.|.-.
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlv-----SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV--RDVAwaP~~g 220 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV-----SGGCDNLVKIWKFDSDSWKLERTLEGHKDWV--RDVAWAPSVG 220 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceee-----ccCCccceeeeecCCcchhhhhhhhhcchhh--hhhhhccccC
Confidence 5667888999997 6 3443 344457889999888753 22223333 5788888641
Q ss_pred ----EEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCce
Q psy4818 201 ----GFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD 276 (734)
Q Consensus 201 ----~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 276 (734)
+|+-.+.+ +.--||..+.+..+-+..++.+. +.....++||..|..|++... .+.
T Consensus 221 l~~s~iAS~SqD--------------g~viIwt~~~e~e~wk~tll~~f---~~~~w~vSWS~sGn~LaVs~G----dNk 279 (299)
T KOG1332|consen 221 LPKSTIASCSQD--------------GTVIIWTKDEEYEPWKKTLLEEF---PDVVWRVSWSLSGNILAVSGG----DNK 279 (299)
T ss_pred CCceeeEEecCC--------------CcEEEEEecCccCcccccccccC---CcceEEEEEeccccEEEEecC----CcE
Confidence 23322221 12234444433232233333222 224567899999999997532 256
Q ss_pred EEEEeCC
Q psy4818 277 LHYFDLH 283 (734)
Q Consensus 277 i~~~d~~ 283 (734)
+.+|.-.
T Consensus 280 vtlwke~ 286 (299)
T KOG1332|consen 280 VTLWKEN 286 (299)
T ss_pred EEEEEeC
Confidence 6666443
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=87.55 E-value=11 Score=38.84 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=42.9
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCcee
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~ 389 (734)
|++|++ +++.++++. +|.+......- .+.... -+..+.+..+...+ ++.+++. .|...|++||+.+|+.+
T Consensus 159 vS~D~~-~IitaDRDE---kIRvs~ypa~f--~Iesfc-lGH~eFVS~isl~~-~~~LlS~--sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 159 VSPDDQ-FIITADRDE---KIRVSRYPATF--VIESFC-LGHKEFVSTISLTD-NYLLLSG--SGDKTLRLWDITSGKLL 228 (390)
T ss_pred ecCCCC-EEEEecCCc---eEEEEecCccc--chhhhc-cccHhheeeeeecc-Cceeeec--CCCCcEEEEecccCCcc
Confidence 999985 555676643 34443332211 112222 22234556666676 6666555 44578999999999987
Q ss_pred eeeC
Q psy4818 390 HSFP 393 (734)
Q Consensus 390 ~~l~ 393 (734)
..+.
T Consensus 229 ~t~d 232 (390)
T KOG3914|consen 229 DTCD 232 (390)
T ss_pred cccc
Confidence 5544
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.19 E-value=15 Score=41.43 Aligned_cols=145 Identities=11% Similarity=-0.024 Sum_probs=72.0
Q ss_pred ceEEEEeCCCCCCCcccCCCCceeeec--cccceEEEEEecCCeEEEEeCCCC---CCceEEEEecCCCCCCCceEeecC
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKTVIP--GMDHHHEIIANNGPELIVKTTKNA---PKGKVVTINLNNPCEKNWKTLIPE 349 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~l~~--~~~~~~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~ 349 (734)
+.++.+|..++ .|..+.. .......... -++.||+.+.... ....++.+|+.+.. |..+.+.
T Consensus 358 ~~v~~yd~~~~---------~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~ 424 (534)
T PHA03098 358 NTVESWKPGES---------KWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPL 424 (534)
T ss_pred ceEEEEcCCCC---------ceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCC
Confidence 67889998772 2332211 1111122233 3467887765321 12468899987765 7765432
Q ss_pred CCCceeEEEEEeeCCEEEEEEEeCC------ceeEEEEECCCCceeeeeC-C--CCceEEeeccCcccceEEEEEecCCC
Q psy4818 350 DENRTLDVVAAVANNKLIVHYIQNV------RSVMDLHDLNTGKRLHSFP-L--DLGQITHISGRRKYNEVFYGFTSFLQ 420 (734)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~~------~~~l~~~dl~~g~~~~~l~-~--~~g~v~~~~~~~d~~~l~~~~ss~~~ 420 (734)
........+... ++.+|+....+. ...++++|+.++++. .+. . +........ . ++++++. .+...
T Consensus 425 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~--~-~~~iyv~-GG~~~ 498 (534)
T PHA03098 425 PISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT-ELSSLNFPRINASLCI--F-NNKIYVV-GGDKY 498 (534)
T ss_pred CccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCcee-eCCCCCcccccceEEE--E-CCEEEEE-cCCcC
Confidence 211111122223 478887764322 235899999877763 332 1 211111111 1 3445443 23221
Q ss_pred ---CceEEEEeCCCCcCCCCCCceeEEe
Q psy4818 421 ---PGTIYHCNIPENITDQDDFKPTIFR 445 (734)
Q Consensus 421 ---P~~~~~~d~~~~~~~~~~~~~~~~~ 445 (734)
-..++.||+ .++ .++.+.
T Consensus 499 ~~~~~~v~~yd~-----~~~--~W~~~~ 519 (534)
T PHA03098 499 EYYINEIEVYDD-----KTN--TWTLFC 519 (534)
T ss_pred CcccceeEEEeC-----CCC--EEEecC
Confidence 246889998 455 565443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.08 E-value=30 Score=37.63 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=62.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
...++.||+|+.++.. |+..+.||- .. + ......+.. ..++|++.++ ++....
T Consensus 35 p~~ls~npngr~v~V~----g~geY~iyt--~~-~-~r~k~~G~g--~~~vw~~~n~-yAv~~~---------------- 87 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC----GDGEYEIYT--AL-A-WRNKAFGSG--LSFVWSSRNR-YAVLES---------------- 87 (443)
T ss_dssp -SEEEE-TTSSEEEEE----ETTEEEEEE--TT-T-TEEEEEEE---SEEEE-TSSE-EEEE-T----------------
T ss_pred CeeEEECCCCCEEEEE----cCCEEEEEE--cc-C-CcccccCce--eEEEEecCcc-EEEEEC----------------
Confidence 5678999999999982 223366665 11 1 111122222 5799999776 332221
Q ss_pred CcEEEE-EECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 224 GQKIYY-HVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 224 ~~~l~~-~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
..+|.+ .++...... .+..+... ..+ |. |..|.+... ..|.++|.+++ .....+.-
T Consensus 88 ~~~I~I~kn~~~~~~k---~i~~~~~~---~~I-f~--G~LL~~~~~-----~~i~~yDw~~~---------~~i~~i~v 144 (443)
T PF04053_consen 88 SSTIKIYKNFKNEVVK---SIKLPFSV---EKI-FG--GNLLGVKSS-----DFICFYDWETG---------KLIRRIDV 144 (443)
T ss_dssp TS-EEEEETTEE-TT--------SS-E---EEE-E---SSSEEEEET-----TEEEEE-TTT-----------EEEEESS
T ss_pred CCeEEEEEcCccccce---EEcCCccc---ceE-Ec--CcEEEEECC-----CCEEEEEhhHc---------ceeeEEec
Confidence 124554 344322211 11111111 111 11 887765432 35899999882 12222221
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEecC
Q psy4818 303 MDHHHEIIANNGPELIVKTTKNAPKGKVVTINLN 336 (734)
Q Consensus 303 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 336 (734)
..-..-+|+++|+.+++++.. ..-|+.++.+
T Consensus 145 ~~vk~V~Ws~~g~~val~t~~---~i~il~~~~~ 175 (443)
T PF04053_consen 145 SAVKYVIWSDDGELVALVTKD---SIYILKYNLE 175 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S----SEEEEEE-HH
T ss_pred CCCcEEEEECCCCEEEEEeCC---eEEEEEecch
Confidence 111223599999999988754 2335555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=86.40 E-value=0.49 Score=49.67 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHH
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 586 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~ 586 (734)
.-+.+++++|..++.-++++|.|.|.|+||+-++.-+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 4678899999999999999999999999999988754
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=86.02 E-value=24 Score=38.84 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=67.3
Q ss_pred EEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc------cccc---cccc-ccCeeEEEcCC--cEEEEEEEecCCCCC
Q psy4818 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD------YPEV---LKNV-KFPSISWTHDH--KGFFYNQYCDINGTA 214 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~------~~~~---~~~~-~~~~~~wSpDg--~~l~y~~~~~~~~~~ 214 (734)
..+.-|...||-+.. .+..|.|||+..... .... .... ..+...+.-|. .+|+....|.
T Consensus 223 vv~fkDe~tlaSaga----~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~----- 293 (720)
T KOG0321|consen 223 VVLFKDESTLASAGA----ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN----- 293 (720)
T ss_pred EEEEeccceeeeccC----CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-----
Confidence 566778877774432 346899999976431 1100 0000 11233445554 6666655433
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.||.+++.+-....+..|...-...++.--..||||.+|+ ++......|+|-+.+
T Consensus 294 -----------sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~----SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 294 -----------SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL----SGSSDEQAYIWVVSS 348 (720)
T ss_pred -----------cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe----ccCCCcceeeeeecC
Confidence 6999988765443334444433455666778899999998 333446778887776
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=85.99 E-value=24 Score=37.43 Aligned_cols=17 Identities=12% Similarity=-0.138 Sum_probs=11.8
Q ss_pred EEEEEEecCCcEEEEEEe
Q psy4818 252 GLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 252 ~~~~~~SpDG~~l~~~~~ 269 (734)
..++.|.|||+ |++...
T Consensus 126 ~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred ccCceECCCCC-EEEecc
Confidence 44789999996 555443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1230|consensus | Back alignment and domain information |
|---|
Probab=85.77 E-value=18 Score=37.69 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=101.4
Q ss_pred eEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC---CCC---ceEEEEEEECCCCCccccccccc
Q psy4818 115 SILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK---SGS---DWNTLHIKDVDTGKDYPEVLKNV 188 (734)
Q Consensus 115 ~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~---~g~---~~~~l~v~dl~~g~~~~~~~~~~ 188 (734)
..||+.+....+|..+..||.-.+- . -..+..-|.|....|.-.. ++. ...++|++|+.+.+..+....+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR--s-shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR--S-SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC--c-cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 4577777777889988888854332 1 1123444666444432111 110 12479999999887544333222
Q ss_pred -----ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcE
Q psy4818 189 -----KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRY 263 (734)
Q Consensus 189 -----~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~ 263 (734)
.+..++|- .+-|+|..+.+.. .+..+-+.||..+|++-+...+..-.....+..-..+..+|+|..
T Consensus 175 PS~RSGHRMvawK--~~lilFGGFhd~n-------r~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 175 PSPRSGHRMVAWK--RQLILFGGFHDSN-------RDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCCccceeEEee--eeEEEEcceecCC-------CceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 12356773 4567787775421 112344578888888754433222110011223345678899998
Q ss_pred EEEEEecC----------CCCceEEEEeCCCCCCCcccCCCCceeeec-----cccceEEE-EEecCCeEEE
Q psy4818 264 LLVSTSNN----------TQGSDLHYFDLHSLPDGKISGKFPLKTVIP-----GMDHHHEI-IANNGPELIV 319 (734)
Q Consensus 264 l~~~~~~~----------~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-----~~~~~~~~-~s~dg~~l~~ 319 (734)
+++-..+. ...+++|+++.++|... ...|.++-. ....++.+ +.++++.++|
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~d----Kw~W~kvkp~g~kPspRsgfsv~va~n~kal~F 313 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGRED----KWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFF 313 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCc----ceeEeeccCCCCCCCCCCceeEEEecCCceEEe
Confidence 88754321 11278999988874322 233443321 12234443 5566676666
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=85.54 E-value=42 Score=33.60 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=54.4
Q ss_pred eEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 167 WNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
..+--+||+++|+.+....+.. ......=.| .++|+.++..+ ....+|+... ..+.+.+|++
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrD---------------tTFRLWDFRe-aI~sV~VFQG 355 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRD---------------TTFRLWDFRE-AIQSVAVFQG 355 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccC---------------ceeEeccchh-hcceeeeecc
Confidence 3467789999999765332221 112222234 35666666432 2455566653 2345667775
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
. ...+.+..|.-|.+.+ ++.+...|.+||+..
T Consensus 356 H--tdtVTS~vF~~dd~vV-----SgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 356 H--TDTVTSVVFNTDDRVV-----SGSDDRTVKVWDLRN 387 (481)
T ss_pred c--ccceeEEEEecCCcee-----ecCCCceEEEeeecc
Confidence 3 2345677888887743 234446889999987
|
|
| >KOG3724|consensus | Back alignment and domain information |
|---|
Probab=85.49 E-value=0.91 Score=50.81 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHc--C--CCC---CCcEEEEEcChHHHHHHHHHhcCCCceeEE
Q psy4818 550 DDFQAAAEYMINK--K--YTK---PKYITIMGGSNGGLLVGACLNQRPELYGAA 596 (734)
Q Consensus 550 ~D~~~~~~~l~~~--~--~~d---~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~ 596 (734)
+=+..|++++.+. + .-+ |.-|+++||||||+.+-++++. |...+..
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-kn~~~~s 209 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-KNEVQGS 209 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-hhhccch
Confidence 4456677777653 2 123 7789999999999999988875 5443433
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=85.22 E-value=8 Score=42.39 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=72.4
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
..++.+++-.+.|..|+ +|+-...|++||..+++.+....+.. ++..+.-++||++++-.+.|.
T Consensus 171 k~siYSLA~N~t~t~iv-----sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg---------- 235 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIV-----SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG---------- 235 (735)
T ss_pred ccceeeeecCCcceEEE-----ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc----------
Confidence 34566777777774444 34445789999999987543222222 235778899999999887654
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.|.+|+++... .+..+....+. +....-+|+=++++. ++...-|++-|+.+
T Consensus 236 ------tIrlWdLgqQr--Cl~T~~vH~e~--VWaL~~~~sf~~vYs----G~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 236 ------TIRLWDLGQQR--CLATYIVHKEG--VWALQSSPSFTHVYS----GGRDGNIYRTDLRN 286 (735)
T ss_pred ------eEEeeeccccc--eeeeEEeccCc--eEEEeeCCCcceEEe----cCCCCcEEecccCC
Confidence 68999998643 22223332222 344555666666652 22335788888877
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=85.14 E-value=1.4 Score=46.52 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 587 (734)
..+++.+.++.|+++.--..-+|.++|||+||.||..++.
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 3457788888887753222236999999999999998874
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=85.04 E-value=29 Score=34.02 Aligned_cols=118 Identities=11% Similarity=-0.081 Sum_probs=63.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC--CCCccccccccc-c-cCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD--TGKDYPEVLKNV-K-FPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~--~g~~~~~~~~~~-~-~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
+....+|||+++++.+-+ + .+++.+.++ +-..+....... + ....+||-....++....+.
T Consensus 161 ~ns~~~snd~~~~~~Vgd---s--~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg---------- 225 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGD---S--RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDG---------- 225 (344)
T ss_pred eeeeEEcCCCceEEEecC---C--CcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCC----------
Confidence 567899999999886543 2 345444443 322222111111 1 13467888777777766543
Q ss_pred cccCCcEEEEEECCCCCCCCe-eEEecCCCCeeEEEEEEecCCcE-EEEEEecCCCCceEEEEeCCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDI-PVVEFPNGRSLGLHSEVTDCGRY-LLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~-~v~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
.+.++++......-. ..-+.+++.+.+....||+-|-. |+|. ++ ..+.+.++|+.++
T Consensus 226 ------~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~-sE--hfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 226 ------TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI-SE--HFSRVHVVDTRNY 284 (344)
T ss_pred ------cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE-ec--CcceEEEEEcccC
Confidence 344555432211110 11122444556778899986642 2332 22 3478999999884
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=84.90 E-value=56 Score=34.46 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=59.8
Q ss_pred CCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCee
Q psy4818 163 SGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIP 241 (734)
Q Consensus 163 ~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~ 241 (734)
+|+...++.+||+++|++..... .+..+..+.|.|-.-.+.....- ..+|.+.++........
T Consensus 261 SgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~---------------D~~V~l~D~R~~~~s~~- 324 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSY---------------DGTVALKDCRDPSNSGK- 324 (463)
T ss_pred ecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccc---------------cceEEeeeccCccccCc-
Confidence 35566899999999999754332 33345789999987666665432 22566666553111100
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 242 VVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 242 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
-+.. .+-+..+.|.|-....++.+. +...||.+|+..
T Consensus 325 ~wk~---~g~VEkv~w~~~se~~f~~~t---ddG~v~~~D~R~ 361 (463)
T KOG0270|consen 325 EWKF---DGEVEKVAWDPHSENSFFVST---DDGTVYYFDIRN 361 (463)
T ss_pred eEEe---ccceEEEEecCCCceeEEEec---CCceEEeeecCC
Confidence 0100 012345778887777776553 235789999877
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=84.62 E-value=46 Score=33.33 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=78.1
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCce
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGK 329 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 329 (734)
.+.++.|+|.+..|++.+++ ..+.+++.... .+........+... .|.+ ..+++. ++ -.+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWD----gslrlYdv~~~---------~l~~~~~~~~plL~c~F~d-~~~~~~-G~---~dg~ 76 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD----GSLRLYDVPAN---------SLKLKFKHGAPLLDCAFAD-ESTIVT-GG---LDGQ 76 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc----CcEEEEeccch---------hhhhheecCCceeeeeccC-CceEEE-ec---cCce
Confidence 45678999999999887754 45777777662 11111111111111 1433 344443 22 3457
Q ss_pred EEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCccc
Q psy4818 330 VVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKY 408 (734)
Q Consensus 330 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~ 408 (734)
|-++|+.++.. ..+-.+. ..+..+........+++..-+ ..+.+||... +. ...+.. ...|..++. .+
T Consensus 77 vr~~Dln~~~~---~~igth~--~~i~ci~~~~~~~~vIsgsWD--~~ik~wD~R~-~~-~~~~~d~~kkVy~~~v--~g 145 (323)
T KOG1036|consen 77 VRRYDLNTGNE---DQIGTHD--EGIRCIEYSYEVGCVISGSWD--KTIKFWDPRN-KV-VVGTFDQGKKVYCMDV--SG 145 (323)
T ss_pred EEEEEecCCcc---eeeccCC--CceEEEEeeccCCeEEEcccC--ccEEEEeccc-cc-cccccccCceEEEEec--cC
Confidence 99999988761 2233333 333333332224456665555 4788998743 21 122222 234545544 35
Q ss_pred ceEEEEEecCCCCceEEEEeC
Q psy4818 409 NEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 409 ~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.|++..+. ..+..||+
T Consensus 146 ~~LvVg~~~----r~v~iyDL 162 (323)
T KOG1036|consen 146 NRLVVGTSD----RKVLIYDL 162 (323)
T ss_pred CEEEEeecC----ceEEEEEc
Confidence 677776554 36888998
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 734 | ||||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 0.0 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 0.0 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 0.0 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 0.0 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 0.0 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 0.0 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 0.0 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 0.0 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 0.0 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 0.0 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 0.0 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 1e-132 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 1e-131 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 1e-131 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 1e-131 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-116 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-112 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 2e-39 | ||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 1e-33 |
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 734 | |||
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 0.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 0.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 0.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 0.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 0.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 8e-27 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 1e-25 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-17 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 5e-15 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 7e-15 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 2e-12 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 4e-11 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 5e-11 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-10 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 5e-10 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-09 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 4e-09 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 5e-09 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 8e-09 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 7e-08 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 2e-07 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 7e-07 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 1e-06 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 2e-06 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 2e-06 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 2e-05 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 4e-05 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 4e-05 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 4e-05 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 5e-05 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 8e-05 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 3e-04 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 5e-04 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 6e-04 |
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 887 bits (2294), Expect = 0.0
Identities = 328/712 (46%), Positives = 463/712 (65%), Gaps = 8/712 (1%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIK 81
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R K
Sbjct: 5 QYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYK 64
Query: 82 EQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGT 141
E++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 65 ERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGT 124
Query: 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG 201
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKG 184
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG 261
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D G
Sbjct: 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG 244
Query: 262 RYLLVSTSNNTQG-SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
RY+L+S + L Y DL I+G +I + ++ + N G K
Sbjct: 245 RYVLLSIREGCDPVNRLWYCDLQQ-ESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFK 303
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + L
Sbjct: 304 TNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363
Query: 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
HDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++ +
Sbjct: 364 HDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL-----TKEELE 418
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +YGYGG+ +
Sbjct: 419 PRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNI 478
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 479 SITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLI 538
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+ YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + ++
Sbjct: 539 KEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTD 598
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPN-NTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+G ++K HF L+ YSPLHN+K+P + QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 599 YGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQY 658
Query: 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 659 IVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 | Back alignment and structure |
|---|
Score = 810 bits (2096), Expect = 0.0
Identities = 275/715 (38%), Positives = 400/715 (55%), Gaps = 34/715 (4%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIK 81
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y R AIK
Sbjct: 11 HYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIK 69
Query: 82 EQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGT 141
E+L NY K AP R+ +++F N GLQN ++L+ Q+ EVFLDPN LS DGT
Sbjct: 70 EKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGT 128
Query: 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG 201
TAL +FS +G+ AY LS +GSDW +H+ DV++ + LK+VKF ISW + +G
Sbjct: 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGN-EG 187
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDC 260
FFY+ Y +G + K+Y+H LGT Q+ D V P + + VT+
Sbjct: 188 FFYSSYDKPDG---SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED 244
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
R+LL+S +N+T G+ L+ DL + PL TV +D ++ N G L +
Sbjct: 245 DRFLLISAANSTSGNRLYVKDLSQ-ENA------PLLTVQGDLDADVSLVDNKGSTLYLL 297
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T ++AP ++VT++ NP +W+ LIPE + L V + L Y+ + + ++
Sbjct: 298 TNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTV--HSGSGYLFAEYMVDATARVEQ 354
Query: 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
D + LG ++ +G+ +++GF ++ QP T+Y
Sbjct: 355 FDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP-------KSGA 407
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
+++R + P F+P + ++Q +++SKDGTRVP+ I +R G + NP I+YGYGG+ V
Sbjct: 408 ISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDV 466
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
S+ P+FS+S +L G+YA+ N+RGGGE G+ WH AG KQN FDDF AAAEY+
Sbjct: 467 SLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLK 525
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+ YT+ + I GGSNGGLLVGA + QRP+L AL VG LDMLR++ FT +
Sbjct: 526 AEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYD 585
Query: 621 FGSP-NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+G+ +++ F L YSPLHN++ YP+T+V T DHDDRV P HS+KF ATLQ
Sbjct: 586 YGTSADSEAMFDYLKGYSPLHNVR---PGVSYPSTMVTTADHDDRVVPAHSFKFAATLQA 642
Query: 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
+P L+R+E +AGHG GTP+ K IE+ DIY F + +G + P P
Sbjct: 643 ----DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRELPRQP 693
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 807 bits (2088), Expect = 0.0
Identities = 243/711 (34%), Positives = 377/711 (53%), Gaps = 34/711 (4%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R ++ V D HG+++ DPYRWLE E Q + QN + REA+
Sbjct: 3 YPATRAEQVV-DTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREALAA 61
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+ + + S P R+ +FY + +ILY ++ +G +V LDPN SKDGT
Sbjct: 62 RFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTV 121
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PEVLKNVKFPSISWTHDHKG 201
+L +A S +GK A+ + +D LH+ DVD+G+ +V++ K+ + WT D KG
Sbjct: 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKG 181
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG 261
F+Y I YH LGTE KD V E + L S+++ G
Sbjct: 182 FYYEWLPTDPSI---KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG 238
Query: 262 RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
+YL V +D+++ G+ + ++ G+ +E+ V T
Sbjct: 239 KYLFVYILRGWSENDVYWKRP---------GEKDFRLLVKGVGAKYEV-HAWKDRFYVLT 288
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+ AP+ +V ++ P +WK ++PED + +L V+ V L + Y+++ S + +
Sbjct: 289 DEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347
Query: 382 DLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
L GK + + L +G +++ G ++ +Y FTSF P IY ++ K
Sbjct: 348 TL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV-------STGK 399
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
++ + VP P +Q +QV++ SKDGT+VPM+++HR R+ P ++YGYGG+ V
Sbjct: 400 SELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNV 458
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
++ F S +L G+YA+ N+RGGGE G+ WH+AGRL KKQN FDDF AAAEY++
Sbjct: 459 NMEANFRSSILPWL-DAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLV 517
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+KYT+PK + I GGSNGGLLVGA + QRPELYGA + V LDM+R++ F E
Sbjct: 518 QQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPE 577
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
+G+ F L +YSP H+++ + +YPA L++ DHDDRV P+H+ KF+A +Q
Sbjct: 578 YGTAEKPEDFKTLHAYSPYHHVR---PDVRYPALLMMAADHDDRVDPMHARKFVAAVQNS 634
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
G+ LLR+E +AGHG + K+IE D+Y FL + L ++
Sbjct: 635 PGN----PATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQGAQ 681
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 | Back alignment and structure |
|---|
Score = 803 bits (2077), Expect = 0.0
Identities = 245/717 (34%), Positives = 375/717 (52%), Gaps = 39/717 (5%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFM--QNNISNPYCQNHTDREA 79
PYP + V +D+ G K+ DP+RWLE + ++ ++ Q+ + Y + +R A
Sbjct: 39 PYPASPQVPLV-EDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLPERAA 97
Query: 80 IKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQR---NLTGSTEVFLDPNKL 136
+++++ + +YE++ PQR+ + FY N GL N S L V+ + V LDPN
Sbjct: 98 LEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTW 157
Query: 137 SKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWT 196
+KDG TAL +A SD+G+ AY + GSDW T+ V GK + LK VKF ++W
Sbjct: 158 AKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWL 217
Query: 197 HDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256
+ Y+++ + + Q ++ H LGT Q D PV P G +
Sbjct: 218 GN-DALLYSRFAE--PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS 274
Query: 257 VTDCGRYLLVSTSNNTQG-SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGP 315
V+ GR++++++S T + +H + + G P+ +IP + + + G
Sbjct: 275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG------PVTALIPDLKAQWDFVDGVGD 328
Query: 316 ELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375
+L + AP K+V ++L+ + T++PE ++ V +A N+L YI + +
Sbjct: 329 QLWFVSGDGAPLKKIVRVDLSGS-TPRFDTVVPESKDNLESV--GIAGNRLFASYIHDAK 385
Query: 376 SVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENIT 434
S + DL+ GK + L +G + +SGR + F+SF QP T+ +
Sbjct: 386 SQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP----- 439
Query: 435 DQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYG 494
K T + + F+P F+ +QV++ SKDGT+VPM+I+ R A P ++YG
Sbjct: 440 --ATAKTTPWEPVHLT-FDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTLLYG 494
Query: 495 YGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA 554
YGG+ V++ P FS ++ G +A+ N+RGGGE G+ WH+AGR KKQN FDDF A
Sbjct: 495 YGGFNVALTPWFSAGFMTWIDSG-GAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIA 553
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614
A E++I T + I GGSNGGLL+GA NQRP+L+ AA VG +DMLRF++FT
Sbjct: 554 AGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAG 613
Query: 615 YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674
Y ++G P + + L YSP HN++ + YPA LV T D DDRV P HS+K+
Sbjct: 614 RYWVDDYGYPEKEADWRVLRRYSPYHNVR---SGVDYPAILVTTADTDDRVVPGHSFKYT 670
Query: 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
A LQ P L+R+E AGHG G P+ K IEE D+ FL GL P
Sbjct: 671 AALQT----AAIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGLTPRP 723
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 668 bits (1727), Expect = 0.0
Identities = 160/748 (21%), Positives = 296/748 (39%), Gaps = 70/748 (9%)
Query: 14 AEKVEFTGPYPKVR-KDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFM--QNNISNPY 70
A K V +D +DPY W+ + + + +
Sbjct: 36 AAKKPHRVTLGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQAR 95
Query: 71 CQNHTD-REAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQR-----NLT 124
+ R+ I + + N + SAP +Y + + I
Sbjct: 96 SADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDV 155
Query: 125 GSTEVFLDPNKLSKDGT--TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-GKDY 181
+ EV +D N++++ +++ A+ + SG++ T+ K + +
Sbjct: 156 AAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI 215
Query: 182 PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIP 241
+ + I W DH FY ET K++ HV+G Q +D+
Sbjct: 216 ADKVSGT-NGEIVWGPDHTSLFYVTK---------DET--LRENKVWRHVMGKLQSEDVC 263
Query: 242 VVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301
+ E N L + S + + +++H DL K + L+ V P
Sbjct: 264 LYEEHNPL-FSAFMYKAADTNTLCIG-SQSPETAEVHLLDLR-----KGNAHNTLEIVRP 316
Query: 302 -GMDHHHEIIANNGPELIVKTTKN-APKGKVVTINLNNPCEKNWKT-LIPEDENRTLDVV 358
+++ + L++ T + A K++ P +W L+ E+ ++ +
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMESI 374
Query: 359 AAVANNKLIVHYIQNVRSVMDLHDLNT-------GKRLHSFPLD-----LGQITHISGRR 406
A +N L+V + + + ++ G L ++ + +
Sbjct: 375 AVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEY 433
Query: 407 KYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVP-EFEPTLFQTKQVYFR 465
+ ++S P T + + D T + V F+ ++ ++ +
Sbjct: 434 EEPTFRMEYSSLATPNTWFDVSP-------QDHSRTAVKVREVGGGFDAANYKVERRFAT 486
Query: 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 525
+ D T++P+ +++ ++ P ++YGYG YG+S+ P FSI + I+AI +
Sbjct: 487 APDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDR-GMIFAIAH 545
Query: 526 IRGGGELGEDWHNAG-RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 584
IRGG ELG W+ G + L K+N F DF AAAE+++N K T P + G S GGLL+GA
Sbjct: 546 IRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGA 605
Query: 585 CLNQRPELYGAALILVGALDMLRFN---KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHN 641
LN RP+L+ AL V +D++ + E+G+PN ++ +LSYSP+ N
Sbjct: 606 VLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDN 665
Query: 642 IKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH 701
++ +YP +V G HD RV K+++ L+E N +LL ++ ++GH
Sbjct: 666 VR----AQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKT----DNNEILLNIDMESGH 717
Query: 702 GQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
K +E F+ K L
Sbjct: 718 FSAKDRYKFWKESAIQQAFVCKHLKSTV 745
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 8e-27
Identities = 64/396 (16%), Positives = 119/396 (30%), Gaps = 60/396 (15%)
Query: 360 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGF-TSF 418
A N LI +V+ + D +G+ + + G S
Sbjct: 300 APLANGLIAVVHGKGAAVLGILDPESGELV---DAAGPWTEWAATLTVSGTRAVGVAASP 356
Query: 419 LQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLF-QTKQVYFRSKDGTRVPMYII 477
+ D + +P + + + F + DG + +I
Sbjct: 357 RTAYEVVEL-------DTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409
Query: 478 ----HRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH--F--NGIYAI--PNIR 527
+ P ++ +GG PT + + L F G + N
Sbjct: 410 PPHSPDFTGPADELPPYVVMAHGG------PTSRVPAVLDLDVAYFTSRG-IGVADVNYG 462
Query: 528 GGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 587
G G + R +D A A + + + + GGS GG + L
Sbjct: 463 GSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLV 522
Query: 588 QRPELYGAALILVGALDMLRFNKFTI----AYYSESEFGSPNNKTHFHNLLSYSPLH--- 640
++Y +L LD+L + + Y + GS +PL
Sbjct: 523 S-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPER--YRDRAPLTRAD 579
Query: 641 NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAG 700
++VP L+L G D PP +F+ + +P+ L E G
Sbjct: 580 RVRVP--------FLLLQGLEDPVCPPEQCDRFLEAVAGC--GVPHA----YLSFE-GEG 624
Query: 701 HGQGTP--LMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
HG +++++E + G++ +P
Sbjct: 625 HGFRRKETMVRALEAELS---LYAQVFGVE-VAGVP 656
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-25
Identities = 96/607 (15%), Positives = 184/607 (30%), Gaps = 105/607 (17%)
Query: 116 ILYVQRNLTGSTEVFL----DPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 171
+L V GS +L + KL+ L G+ G++ + L
Sbjct: 36 LLVVG-FSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVGRVILVRDVSKGAEQHALF 93
Query: 172 IKDVDTGKDYPEVLKNVKFPSI-SWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYH 230
+ + + L+ VK I S + + T D + +
Sbjct: 94 KVNTSRPGE-EQRLEAVKPMRILSGVDTGEAVVF-----TGATEDR----------VALY 137
Query: 231 VLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290
L ++ + P G G + L +L S
Sbjct: 138 ALDGGGLRE--LARLP-----GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS------ 184
Query: 291 SGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED 350
G + G I ++ + A + ++VT++ + + + L
Sbjct: 185 -GGLRVFDSGEGSFSSASISPGM--KVTA-GLETAREARLVTVDPRD---GSVEDLELPS 237
Query: 351 ENRT------LDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 404
++ + + + + + +L V + RS + + G +
Sbjct: 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDG-------ERVEAPQGNHGRVVL 290
Query: 405 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEP-TLFQTKQVY 463
R ++ TS P I +P E +PE ++ ++ V+
Sbjct: 291 WR--GKLVTSHTSLSTPPRIV---------SLPSGEPL--LEGGLPEDLRRSIAGSRLVW 337
Query: 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAI 523
S DG+RVP Y++ A P ++ +GG ++ G + +
Sbjct: 338 VESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAA--G-FHV 392
Query: 524 --PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 581
PN RG GE+W +D AAA + + IMG S GG +
Sbjct: 393 VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYM 450
Query: 582 VGACLNQRPELYGAALILVGALDMLRFNKFT---IAYYSESEFGSPNNKTHFHNLLSYSP 638
L +P L+ A + +D + + + E G + S SP
Sbjct: 451 TLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI-----MRSRSP 505
Query: 639 LH---NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695
++ IK P ++ + R P + + L + ++ +
Sbjct: 506 INHVDRIKEP--------LALIHPQNASRTPLKPLLRLMGELLAR--GKTFE----AHII 551
Query: 696 EQDAGHG 702
DAGH
Sbjct: 552 P-DAGHA 557
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 38/277 (13%), Positives = 79/277 (28%), Gaps = 47/277 (16%)
Query: 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL-RH 516
+ + + ++ G P +++ +G S + R
Sbjct: 5 KLSSIEIPV-GQDELSGTLLTPTGM------PGVLFVHGW-------GGSQHHSLVRARE 50
Query: 517 FNGI-YAI--PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIM 573
G+ ++RG + R DD +AA + + + Y I ++
Sbjct: 51 AVGLGCICMTFDLRGHEGYASMRQSVTR----AQNLDDIKAAYDQLASLPYVDAHSIAVV 106
Query: 574 GGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNL 633
G S GG L +RP AL +++ ++ ++ + +
Sbjct: 107 GLSYGGYLSALLTRERPV-EWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRR--ALAP 163
Query: 634 LSYSPLH---NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690
L K L++ ++D VP +
Sbjct: 164 GDNLALAACAQYKGD--------VLLVEAENDVIVPHPVMRNYADAFT--------NARS 207
Query: 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYV-FLMKSLG 726
L RV A H + +E T + +L + +
Sbjct: 208 LTSRVIAGADHALSVK--EHQQEYTRALIDWLTEMVV 242
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 5e-15
Identities = 50/310 (16%), Positives = 82/310 (26%), Gaps = 67/310 (21%)
Query: 450 PEFEPTLFQTKQ-----VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSV 502
P+ +P + + ++S R+ + +P I+ GY
Sbjct: 42 PDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKE---GPHPAIVKYHGYNA----- 93
Query: 503 LPTFSISRCMFLRHFNGIYAI--PNIRGGGELGED----------WHNAGRLLKKQN--- 547
++ + YA +RG + W G L K
Sbjct: 94 --SYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYR 151
Query: 548 -CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML 606
+ D A E + + I + GGS GG L A A +
Sbjct: 152 GVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFE 211
Query: 607 RFNKFTIAYYSES------EFGSP-NNKTHFHNLLSYSPLH---NIKVPPNNTQYPATLV 656
R + GSP L + ++ +KVP L+
Sbjct: 212 RAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP--------VLM 263
Query: 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTD 716
G D PP + L + L+V + GH P T+
Sbjct: 264 SIGLIDKVTPPSTVFAAYNHL----------ETKKELKVYRYFGHE-YIP-----AFQTE 307
Query: 717 IYVFLMKSLG 726
F + L
Sbjct: 308 KLAFFKQILK 317
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 46/282 (16%), Positives = 76/282 (26%), Gaps = 57/282 (20%)
Query: 451 EFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISR 510
F+ + + +YF G R+ I ++P +I +G S
Sbjct: 74 SFQVSFAECYDLYFTGVRGARIHAKYIKPKTE---GKHPALIRFHGYSSNSGDWND---- 126
Query: 511 CMFLRHFNGIYAI--PNIRGGGELGEDWHNAGR----------------LLKKQNCFDDF 552
G + + ++RG G +D + ++ F D
Sbjct: 127 -KLNYVAAG-FTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDT 184
Query: 553 QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612
A ++N + +MG S GG L AC P + D R
Sbjct: 185 AQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLD 244
Query: 613 IAYYSESEFG---------SPNNKTHFHNLLSYSPLH---NIKVPPNNTQYPATLVLTGD 660
+A + E F L + IK L+ G
Sbjct: 245 LAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD--------VLMCVGL 296
Query: 661 HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
D PP + +Q ++V D GH
Sbjct: 297 MDQVCPPSTVFAAYNNIQS----------KKDIKVYPDYGHE 328
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 50/258 (19%), Positives = 79/258 (30%), Gaps = 43/258 (16%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 525
DG +P+Y+ G +P +I G S + A +
Sbjct: 135 DGIPMPVYVRIPEGP---GPHPAVIMLGGLESTK-----EESFQMENLVLDRGMATATFD 186
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
G GE+ E AG + A + + + + I ++G S GG
Sbjct: 187 GPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKS 240
Query: 586 LNQRPELYGAALILVGAL-DMLRFNKFTIAYYSESEFGSPNNKT---HFHNLLSYSP--- 638
P L AA I G D+ ++ T ++ S + H +
Sbjct: 241 AACEPRL--AACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDV 298
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
L I P T +L G D VP + + + L L VE+D
Sbjct: 299 LSQIACP--------TYILHGV-HDEVPLSFVDTVLELVPAE---------HLNLVVEKD 340
Query: 699 AGHGQGTPLMKSIEEMTD 716
H ++ EM D
Sbjct: 341 GDHCCHNLGIRPRLEMAD 358
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 4e-11
Identities = 39/268 (14%), Positives = 72/268 (26%), Gaps = 47/268 (17%)
Query: 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLR 515
F V+ +S RV + G P II +G G R L
Sbjct: 129 HFLPPGVWRQSVRAGRVRATLFLPPGP---GPFPGIIDIFGIGG-----GLLEYRASLLA 180
Query: 516 HFNGIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMG 574
+G + +L + N + F+ A YM+ K I ++G
Sbjct: 181 G-HGFATLALAYYNFEDLPNNMDNIS--------LEYFEEAVCYMLQHPQVKGPGIGLLG 231
Query: 575 GSNGGLLVGACLNQRPELYGAALILVGALDM----------LRFNKFTIAYYSESEFGSP 624
S G + + + + I + + + + + G
Sbjct: 232 ISLGADICLSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLV 291
Query: 625 NNKTHFHNLL------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
+ + L+ S P+ + P L++ G D + ++
Sbjct: 292 DIVDIRNALVGGYKNPSMIPIEKAQGP--------ILLIVGQDDHNWRSELYAQTVSERL 343
Query: 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTP 706
+ G Q GH P
Sbjct: 344 QAHGKEKPQI-----ICYPGTGHYIEPP 366
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-11
Identities = 46/283 (16%), Positives = 73/283 (25%), Gaps = 50/283 (17%)
Query: 450 PEFEPTLFQTKQ-----VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP 504
P FE K V F G R+ +++ V L + P ++ G G P
Sbjct: 54 PVFERMESHLKTVEAYDVTFSGYRGQRIKGWLL--VPKLEEEKLPCVVQYIGYNGGRGFP 111
Query: 505 ------------TFSI-SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ----N 547
F + +R G + G L +
Sbjct: 112 HDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRR 171
Query: 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR 607
F D A E + + I I GGS GG + A + + R
Sbjct: 172 VFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRR 231
Query: 608 FNKFT--IAYYSESEFGSPNNKTH---FHNLLSYSPLH---NIKVPPNNTQYPATLVLTG 659
+ Y + F + F L + ++ K+P L G
Sbjct: 232 AVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP--------ALFSVG 283
Query: 660 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
D+ PP + P +R+ H
Sbjct: 284 LMDNICPPSTVFAAYNYYAG----------PKEIRIYPYNNHE 316
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 10/224 (4%)
Query: 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRH 516
+K++ F + T+ +I ++++ P+++ Y G F ++
Sbjct: 473 SKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLAST 532
Query: 517 FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGS 576
N I A + RG G G+ +A +D AA + K I I G S
Sbjct: 533 ENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWS 592
Query: 577 NGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY 636
GG + L ++ + + ++ + Y+E G P + + + +
Sbjct: 593 YGGYVTSMVLGSGSGVFKCGIAVAPVSR----WEYYDSVYTERYMGLPTPEDNLDHYRNS 648
Query: 637 SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
+ + + N + L++ G DD V S + L +
Sbjct: 649 TVMSRAE----NFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 10/215 (4%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRHFNGIYAIPN 525
D + +I R+++ P++I YGG SV F+++ + A+ +
Sbjct: 476 DEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVD 535
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
RG G+ A +D A I + K I I G S GG +
Sbjct: 536 GRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLA 595
Query: 586 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 645
L L+ + + ++ + Y+E G P + + + + + +
Sbjct: 596 LASGTGLFKCGIAVAPVSS----WEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAE-- 649
Query: 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
+ L++ G DD V +S + L
Sbjct: 650 --YFRNVDYLLIHGTADDNVHFQNSAQIAKALVNA 682
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 3e-09
Identities = 31/232 (13%), Positives = 60/232 (25%), Gaps = 32/232 (13%)
Query: 477 IHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534
+ + + +++ G G +L + R F + + GE
Sbjct: 13 LSVLARIPEAPKALLLALHGLQGSKEHILA---LLPGYAERGFLLL--AFDAPRHGEREG 67
Query: 535 DWHNAGRLLK----KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP 590
++ + + A + + + GGS G + L +
Sbjct: 68 PPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGF 127
Query: 591 ELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQ 650
G +G+ ++ + + P
Sbjct: 128 RPRGVL-AFIGSGFPMKL----------PQGQVVEDPGVLAL-YQAPPATR----GEAYG 171
Query: 651 YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
L L G D VP K + L+ Y + L VE+ AGH
Sbjct: 172 GVPLLHLHGSRDHIVPLARMEKTLEALRPH-----YPEGRLARFVEEGAGHT 218
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 4e-09
Identities = 60/375 (16%), Positives = 106/375 (28%), Gaps = 61/375 (16%)
Query: 317 LIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376
LI K K V I + + L P+ + + ++ + Y N
Sbjct: 11 LITKVFPEGEKVCAVVIEYPVEIDG--QKLSPDQFSVKVKTGDTYSSRTITKVYANNSGG 68
Query: 377 VMDLHDLNTGKR--LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENIT 434
+ N GK L DL T + G N Q I+ + N
Sbjct: 69 LSFSIFNNRGKYVVLELSTEDLHSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVD--GNEV 126
Query: 435 DQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHR-VGALRNRRNPVIIY 493
+ K T + I+ +F + + G +P Y + +R+ P++++
Sbjct: 127 EPFTSKQTDEKHLIIDDFL------AFTFKDPETGVEIP-YRLFVPKDVNPDRKYPLVVF 179
Query: 494 --GYGGYGVSVLPTFSISRC-------MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544
G G G + +R + P + +
Sbjct: 180 LHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFN 239
Query: 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604
+ ++++ I I G S GG + + PEL+ AA+ + G D
Sbjct: 240 PEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGD 299
Query: 605 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDR 664
+ S + IK P V + D
Sbjct: 300 V-------------------------------SKVERIKDIP-------IWVFHAEDDPV 321
Query: 665 VPPLHSYKFIATLQE 679
VP +S + L E
Sbjct: 322 VPVENSRVLVKKLAE 336
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 5e-09
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 48/265 (18%)
Query: 463 YFRSKDGTRVPMYIIHRVGAL----RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN 518
YF R P+ + G L P I+ +G G R L
Sbjct: 145 YFLPPGVRREPVRVGRVRGTLFLPPEPGPFPGIVDMFGTGG-----GLLEYRASLLAG-K 198
Query: 519 GIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 577
G + +L + + F+ A Y+++ K + ++G S
Sbjct: 199 GFAVMALAYYNYEDLPKTMETLH--------LEYFEEAMNYLLSHPEVKGPGVGLLGISK 250
Query: 578 GGLLVGACLNQRPELYGAALILVGALDM----------LRFNKFTIAYYSESEFGSPNNK 627
GG L + + + A +I ++ L ++ G +
Sbjct: 251 GGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIV 310
Query: 628 THFHNLL------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681
++ L S+ P+ + L L G D +
Sbjct: 311 DVLNSPLEGPDQKSFIPVERAEST--------FLFLVGQDDHNWKSEFYANEACKRLQAH 362
Query: 682 GSLPYQKNPLLLRVEQDAGHGQGTP 706
G Q + + GH P
Sbjct: 363 GRRKPQ-----IICYPETGHYIEPP 382
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 49/280 (17%)
Query: 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGI 520
+ DG ++ Y+ + P+ I G+ G+ ++ L G+
Sbjct: 4 MYIDCDGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIV-AVQE--TLNE-IGV 57
Query: 521 YAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGG 579
+ ++ G G+ + + L K + A +Y + I + G S GG
Sbjct: 58 ATLRADMYGHGKSDGKFEDHT-LFKWL---TNILAVVDYAKKLDFVTD--IYMAGHSQGG 111
Query: 580 LLVGACLNQRPELYGAALILVGA------------LDMLRFNKFTIAYYSESEFGSPNNK 627
L V ++ ALI + L L+F+ I ++ G
Sbjct: 112 LSVMLAAAMERDII-KALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKG 170
Query: 628 THFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 687
+ + + P L++ GD D+ VP S F
Sbjct: 171 NYVRVAQTIRVEDFVD----KYTKP-VLIVHGDQDEAVPYEASVAFSKQY---------- 215
Query: 688 KNPLLLRVEQDAGHGQGTPLMKSIEEMTD-IYVFLMKSLG 726
KN L+ + H +E +T+ + F+++ +
Sbjct: 216 KNCKLVTIP-GDTHC----YDHHLELVTEAVKEFMLEQIA 250
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%)
Query: 489 PVIIYGYGG-YGVSVLPTFSISRCMFLRHF--NGIYAIPNI--RGGGELGEDWHNAGRLL 543
PVI+Y YGG + V T+ S + + G YA+ + RG G +
Sbjct: 486 PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG-YAVFTVDSRGSANRGAAFEQVIHRR 544
Query: 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603
Q D +++ ++ + I + G S GG + + +++ + +
Sbjct: 545 LGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI 604
Query: 604 DMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SPLHNIKVPPNNTQYPATLVLTGD 660
D Y E F +P N Y + L +++ G
Sbjct: 605 D----WNRYAIMYGERYFDAPQE-----NPEGYDAANLLKRAGDLKGR-----LMLIHGA 650
Query: 661 HDDRVPPLHSYKFIATLQE 679
D V HS F+ +
Sbjct: 651 IDPVVVWQHSLLFLDACVK 669
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 69/497 (13%), Positives = 144/497 (28%), Gaps = 151/497 (30%)
Query: 27 RKDETVEDDYHGMKIKDPYRWLEYPHCAE-------TQIFNFMQNNISN---PYCQNHTD 76
K E + + ++ Y++L P E T+++ ++ + N + + +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 77 RE----AIKEQLLR-----------MANYEK----------YSAPQRQENNYFYFHNKGL 111
R +++ LL + K Y + + F+ N
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKN 191
Query: 112 QN--HSILYVQRNLTGSTEVFLDPNKLSK-DGTTALKLYAFSDNGKHFAYCLSKSGSDWN 168
N ++L + + L +DPN S+ D ++ +KL
Sbjct: 192 CNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNIKL-----------------RIHSI 230
Query: 169 TLHIKDVDTGKDYPE---VLKNVKFPSISWTHDHKGFFYNQYCDI-NGTADGTETTAHMG 224
++ + K Y VL NV+ W F N C I T T
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKA-W----NAF--NLSCKILLTTRFKQVTD---- 279
Query: 225 QKIYYHVLGTEQDKDIPVVEFPNG----RSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYF 280
L I + L + DC
Sbjct: 280 ------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------------------- 313
Query: 281 DLHSLPDGKISGKFPLK-TVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN-- 337
LP ++ P + ++I +N K ++ +LN
Sbjct: 314 RPQDLPREVLTT-NPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVLE 367
Query: 338 PCE--KNWKTL--IPEDENRTLDVVAAVANNK------LIVHYIQNVRSVMDLHDLNTGK 387
P E K + L P + +++ + + ++V+ + S+++ +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTI 426
Query: 388 RLHSFPLDLGQ------------ITHISGRRKY-NEVF-------YGFTSFLQPGTIYHC 427
+ S L+L + H + + + ++ Y F S + G +H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHI--G--HHL 481
Query: 428 NIPENITDQDDFKPTIF 444
E+ ++ +F
Sbjct: 482 KNIEH-PERMTLFRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 8e-08
Identities = 54/386 (13%), Positives = 104/386 (26%), Gaps = 128/386 (33%)
Query: 363 NNKLIVHYIQNVRSVMDLHDLNTGKR--LHSFPLDLGQITHISGRR-KYNEVFYGFTSFL 419
++ + D D+ + L +D HI + + F + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKDAVSGTLRLFWTLL 72
Query: 420 -QPGTIYHCNIPENITDQDDFK---PTIFRETIVPEFEPTLFQTKQVYFRSK---DGTRV 472
+ + + E + ++K I E P ++ + R + D
Sbjct: 73 SKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYNDNQVF 126
Query: 473 PMYIIHR---VGALRN-----RRNP-VIIYGYGGYGVSVLPTFSISRCMFLRHF-NGIYA 522
Y + R LR R V+I G G G + + I+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185
Query: 523 IPNIRGGGELGEDWHNAGR------LLKKQN--CFD---DFQAAAEYMINKKY------T 565
W N +L+ + ++ + +++ N K
Sbjct: 186 -------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR----FNKF--------TI 613
+ + + L +P Y L LV L ++ +N F T
Sbjct: 233 ELRRL---------------LKSKP--YENCL-LV--LLNVQNAKAWNAFNLSCKILLTT 272
Query: 614 AYYSESEFGSPNNKTHF---HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670
+ ++F S TH H+ ++ +P L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-------------DEVKSL------------- 306
Query: 671 YKFIATLQEKIGSLPYQK---NPLLL 693
+ L + LP + NP L
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRL 330
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 36/153 (23%)
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV-GALDMLRFNKFTI 613
E+ IN P+ + ++G S GG L N +IL
Sbjct: 111 HKEWQIN-----PEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSF-------- 157
Query: 614 AYYSESEFGSPNNKTHFH----NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669
FG P++ +HF+ N+ Y+ + + P T + D+ VP +
Sbjct: 158 ------TFGWPSDLSHFNFEIENISEYNISEKV-----TSSTPPTFIWHTADDEGVPIYN 206
Query: 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
S K+ L + + P + HG
Sbjct: 207 SLKYCDRLSKH-------QVPFEAHFFESGPHG 232
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRHFNGIYAIPN 525
D +PM I+ P+++ G SV F +S + + + +
Sbjct: 476 DDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCD 535
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
RG G G + R D A M+ ++Y + + G GG L
Sbjct: 536 GRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYI 595
Query: 586 LNQRPELYG----AALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SP 638
L + E G L D K + +SE G + +Y
Sbjct: 596 LPAKGENQGQTFTCGSALSPITD----FKLYASAFSERYLGLHGL-----DNRAYEMTKV 646
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
H + + L++ D+++ H+ + I L
Sbjct: 647 AHRVS----ALEEQQFLIIHPTADEKIHFQHTAELITQLIRG 684
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 25/154 (16%)
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614
A+ + ++ + I + G S GG +V A N + I
Sbjct: 101 ASAHHVD-----CQRIILAGFSAGGHVV-ATYNGVATQPELRTRYHLDHYQGQHA-AIIL 153
Query: 615 YYSESEFGSPNNKTHFH-NLLS-----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL 668
Y + + T N ++ ++ + V D+ VPP+
Sbjct: 154 GYPVIDLTAGFPTTSAARNQITTDARLWAAQRLV-----TPASKPAFVWQTATDESVPPI 208
Query: 669 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
+S K++ + + + + HG
Sbjct: 209 NSLKYVQAMLQH-------QVATAYHLFGSGIHG 235
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 22/203 (10%)
Query: 485 NRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHF---NG-IYAIPNIRGGGELGEDWHNA 539
+R PV +Y YGG +V ++ + G + + RG G D+ A
Sbjct: 514 AKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGA 573
Query: 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599
+ D ++ + + P I + G SNGG + L + + Y +
Sbjct: 574 LYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAG 633
Query: 600 VGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SPLHNIKVPPNNTQYPATLV 656
D ++Y+E P N Y L +I+ + L+
Sbjct: 634 APVTD----WGLYDSHYTERYMDLPAR-----NDAGYREARVLTHIEGLRSP-----LLL 679
Query: 657 LTGDHDDRVPPLHSYKFIATLQE 679
+ G DD V +S ++ LQ+
Sbjct: 680 IHGMADDNVLFTNSTSLMSALQK 702
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 62/268 (23%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIR 527
+G +P Y I + +I GG + + + +N + + ++
Sbjct: 143 EGELLPGYAIISEDKAQ----DTLIVVGGGDTSREDLFYMLGYSGWEHDYNVL--MVDLP 196
Query: 528 GGGE-LGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 586
G G+ + H D +AA +++ + I I G S GG +
Sbjct: 197 GQGKNPNQGLHFE----------VDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAV 246
Query: 587 NQRPELYGAALI-----------------LVGALDMLRFNKFTIAYYSES---------- 619
+ + L +L++ + ++
Sbjct: 247 EKDKRIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAW 306
Query: 620 EFGSPNNKTHFHNLLSYSP---LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIAT 676
+FG + T + +L + + I VP +L L G +D S
Sbjct: 307 QFGQVDFITSVNEVLEQAQIVDYNKIDVP--------SLFLVGAGEDSELMRQSQVLYDN 358
Query: 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQG 704
+++ + LR
Sbjct: 359 FKQR-------GIDVTLRKFSSESGADA 379
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 30/264 (11%), Positives = 63/264 (23%), Gaps = 46/264 (17%)
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
V + + ++ F + ++ + I G G
Sbjct: 69 KRQPSPVCVKTEKKEGYILEKWEFYPFPKSVSTFLVLKPEHLKGAVPGVLCIPGSGRTKE 128
Query: 501 SVLPTFSISRCMFLRHFNGIYAI-------------PNIRGGGELGEDWH---------- 537
++ I + + N ++ + GE +
Sbjct: 129 GLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYD 188
Query: 538 -------NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGL--LVGACLNQ 588
G + D +M + Y + I I G S G +V L++
Sbjct: 189 VVSRFLLELGWSWLGYTSYLD-MQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDK 247
Query: 589 RPELYGAALILVGALDMLRFNKFTIAY-YSESEFGSPNNKTHFH-NLLSYSPLHNI--KV 644
A + L + + E+ PN+ H Y ++ +
Sbjct: 248 DI----YAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASL 303
Query: 645 PPNNTQYPATLVLTGDHDDRVPPL 668
P + G D +
Sbjct: 304 APR-----PIIFTEGGLDRDFRLV 322
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 26/231 (11%), Positives = 58/231 (25%), Gaps = 40/231 (17%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 525
+ ++ ++ + +PV+I G + F L + +
Sbjct: 176 EKGKITAHLHLTNTD---KPHPVVIVSAGLDSLQTDMWRLFR----DHLAKHDIAMLTVD 228
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
+ G + + ++ QA + + Y + ++G GG +
Sbjct: 229 MPSVGY-------SSKYPLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRL 281
Query: 586 LNQRPELYGAALILVGALD-----------MLRFNKFTIAYYSESEFGSPNNKTHFHNLL 634
E A +IL + M + +A + +
Sbjct: 282 SFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAW 341
Query: 635 SYSP-----LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
S KVP L ++ + D P +
Sbjct: 342 SLKVQGFLSSRKTKVP--------ILAMSLEGDPVSPYSDNQMVAFFSTYG 384
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 29/181 (16%)
Query: 550 DDFQAAAEYMI-NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYG------AALILV-G 601
F ++ + TK +T G G L+ L + + ALI + G
Sbjct: 133 TQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCG 192
Query: 602 ALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH 661
D+ + + N+ S SP+ V+ +H
Sbjct: 193 VYDLRELSNLESVNPKNILGLNE------RNIESVSPMLWEYTDVTVWNSTKIYVVAAEH 246
Query: 662 DDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG--------QGTPLMKSIEE 713
D S + L++K + + H + + + +
Sbjct: 247 DSTTFIEQSRHYADVLRKK-------GYKASFTLFKGYDHFDIIEETAIDDSDVSRFLRN 299
Query: 714 M 714
+
Sbjct: 300 I 300
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 32/241 (13%)
Query: 453 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISR 510
E FQ +DG ++ + I G+ + L +
Sbjct: 15 ENLYFQGMATITLERDGLQLV-GTREEPF---GEIYDMAIIFHGFTANRNTSLLREIANS 70
Query: 511 CMFLRHFNGIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569
I ++ + G G+ + N N +D A Y+ + +
Sbjct: 71 L----RDENIASVRFDFNGHGDSDGKFENMTV----LNEIEDANAILNYVKTDPHVRN-- 120
Query: 570 ITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM---LRFNKFTIAYYSESEFGSPNN 626
I ++G + GG++ P+L ++L A + Y+
Sbjct: 121 IYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLP 180
Query: 627 -------KTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+ P ++ G D V P S K+ Q
Sbjct: 181 FKDLTLGGFYLRIAQQLPIYEVSA----QFTKP-VCLIHGTDDTVVSPNASKKYDQIYQN 235
Query: 680 K 680
Sbjct: 236 S 236
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 24/155 (15%)
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614
AAE+ I+ P+ IT G S GG +V + L + ML+ N +
Sbjct: 116 AAEWHID-----PQQITPAGFSVGGHIVALYNDYWATRVATELNVTP--AMLKPNNVVLG 168
Query: 615 YYSESEFGSPNNKTHFHNLLS-----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669
Y S + + ++ N+ T + T D VP +
Sbjct: 169 YPVISPLLGFPKDDATLATWTPTPNELAADQHV-----NSDNQPTFIWTTADDPIVPATN 223
Query: 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704
+ + L K P L V + HG
Sbjct: 224 TLAYATALATA-------KIPYELHVFKHGPHGLA 251
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 37/205 (18%)
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRG-GGELGEDWHNAGRLLKKQNC 548
V+++ Y G + ++R + + +Y P G G D G
Sbjct: 26 VLLHAYTGSPNDMNF---MARALQRSGYG-VYV-PLFSGHGTVEPLDILTKGN------- 73
Query: 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608
D + A + + K + + G S GG+ L P + + L
Sbjct: 74 PDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHH 133
Query: 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSP----------------LHNIKVPPNNTQYP 652
Y+E +L+Y P L+ +K P
Sbjct: 134 LVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQP------- 186
Query: 653 ATLVLTGDHDDRVPPLHSYKFIATL 677
T + D+ V +Y+ L
Sbjct: 187 -TFIGQAGQDELVDGRLAYQLRDAL 210
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 42/210 (20%)
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 549
++++G+ G S+ P ++ + + P ++G G ED F
Sbjct: 44 LLVHGFTGTPHSMRP---LAEAYAKAGYT-VCL-PRLKGHGTHYEDMERTT--------F 90
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI--LVGALDMLR 607
D+ A+ E + + I + G S GG L P++ G I V +
Sbjct: 91 HDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAA 150
Query: 608 FNKFTIAYYSESEFGSPNNKTHFHNLLSYSP-------------------LHNIKVPPNN 648
+ + K L+Y L I P
Sbjct: 151 GMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCP--- 207
Query: 649 TQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
L+ D D VPP ++ +
Sbjct: 208 -----ALIFVSDEDHVVPPGNADIIFQGIS 232
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 30/252 (11%), Positives = 63/252 (25%), Gaps = 54/252 (21%)
Query: 457 FQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFL 514
++ ++ F ++ N+ P I+ G GG + I+ +
Sbjct: 90 YRLEKWEFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLND 147
Query: 515 RHFNGIYAI-------------PNIRGGGE-----------------LGEDWHNAGRLLK 544
R+ + + GE + G
Sbjct: 148 RYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYL 207
Query: 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGL--LVGACLNQRPELYGAALILVGA 602
+ D +M +K+ + I + G S G +V L+ A +
Sbjct: 208 GYASYLD-MQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSI----YAFVYNDF 262
Query: 603 L-DMLRFNKFTIAYYSESEFGSPNNKTHFH----NLLSYSPLHNIKVP-PNNTQYPATLV 656
L + PN+ H ++ + P P ++
Sbjct: 263 LCQTQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRP-------IIL 315
Query: 657 LTGDHDDRVPPL 668
G D + +
Sbjct: 316 TEGGLDRDLDLV 327
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} Length = 208 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 59/241 (24%)
Query: 476 IIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535
+I R + +I + + +G ++ + L N RG G
Sbjct: 21 MITRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVG----- 75
Query: 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 595
+ GR +D +A ++ + ++ G + G + A + ++
Sbjct: 76 -KSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLA---GFSFGAYISAKVAYDQKVAQ- 130
Query: 596 ALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATL 655
L+ + + ++ L + P L
Sbjct: 131 ---LISVAPPVFYE-------------------------GFASLTQMASP--------WL 154
Query: 656 VLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH---GQGTPLMKSIE 712
++ GD D+ VP F+ + P+ V A H G+ L + +
Sbjct: 155 IVQGDQDEVVPFEQVKAFVNQISS----------PVEFVVMSGASHFFHGRLIELRELLV 204
Query: 713 E 713
Sbjct: 205 R 205
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 30/258 (11%), Positives = 67/258 (25%), Gaps = 36/258 (13%)
Query: 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF 517
+T R +G + ++ + + N ++I G+ + ++
Sbjct: 6 KTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIAS--GFARRMDHFAGLAE-YLST-- 60
Query: 518 NGIYAI-PNIRG-GGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGG 575
NG + + G + ++ K I ++
Sbjct: 61 NGFHVFRYDSLHHVGLSSGSIDEFTM----TTGKNSLCTVYHWLQTKGTQN---IGLIAA 113
Query: 576 SNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNN--------- 626
S + ++ + + V L Y S PN+
Sbjct: 114 SLSARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLG 173
Query: 627 -KTHFHNLL--SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683
+ + + L + NT P + T ++DD V Y +A +
Sbjct: 174 SEVFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHI------ 226
Query: 684 LPYQKNPLLLRVEQDAGH 701
+ L + H
Sbjct: 227 ---RTGHCKLYSLLGSSH 241
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 734 | |||
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.92 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.91 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.91 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.91 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.9 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.9 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.9 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.9 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.89 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.89 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.88 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.88 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.88 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.88 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.88 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.87 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.87 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.87 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.87 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.87 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.87 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.87 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.87 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.86 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.86 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.86 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.86 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.86 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.86 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.86 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.86 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.86 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.85 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.85 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.85 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.85 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.84 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.84 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.84 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.84 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.83 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.83 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.83 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.83 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.83 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.83 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.82 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.82 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.82 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.81 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.81 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.81 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.8 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.8 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.8 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.8 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.8 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.79 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.79 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.79 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.79 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.78 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.78 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.78 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.78 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.78 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.78 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.78 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.78 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.77 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.76 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.76 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.75 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.75 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.75 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.75 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.75 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.74 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.74 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.74 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.74 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.74 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.74 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.73 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.73 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.73 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.72 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.72 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.72 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.72 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.72 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.71 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.7 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.7 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.7 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.7 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.7 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.69 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.69 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.68 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.68 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.67 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.67 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.67 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.66 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.66 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.66 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.66 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.65 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.65 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.65 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.64 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.63 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.63 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.63 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.63 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.63 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.62 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.62 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.62 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.62 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.62 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.62 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.62 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.61 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.61 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.61 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.6 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.6 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.6 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.6 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.6 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.59 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.59 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.59 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.59 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.59 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.59 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.59 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.58 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.58 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.58 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.58 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.58 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.58 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.58 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.57 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.57 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.57 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.56 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.56 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.56 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.56 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.55 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.55 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.55 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.55 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.55 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.54 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.54 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.54 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.54 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.53 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.53 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.53 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.53 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.52 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.52 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.52 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.52 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.51 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.51 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.51 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.51 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.51 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.5 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.5 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.49 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.49 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.49 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.49 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.49 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.48 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.48 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.48 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.48 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.48 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.48 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.47 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.47 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.47 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.46 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.46 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.46 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.46 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.46 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.45 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.45 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.44 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.44 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.43 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.41 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.41 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.41 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.41 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.4 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.4 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.4 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.4 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.39 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.38 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.38 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.38 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.36 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.36 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.36 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.36 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.35 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.35 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.35 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.03 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.34 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.33 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.32 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.32 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.32 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.3 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.3 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.3 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.3 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.3 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.29 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.28 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.28 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.28 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.27 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.27 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.26 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.26 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.26 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.25 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.24 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.24 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.23 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.23 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.23 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.22 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.21 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.21 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.21 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.2 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.2 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.2 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.2 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.19 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.19 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.18 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.18 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.18 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.17 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.17 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.17 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.16 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.16 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.16 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.16 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.16 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.15 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.13 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.12 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.12 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.11 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.11 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.11 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.1 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.1 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.1 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.1 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.09 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.09 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.09 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.09 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.08 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.07 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.07 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.07 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.06 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.06 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.06 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.05 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.05 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.05 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.05 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.04 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.03 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.03 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.03 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.03 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.03 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.02 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.02 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.01 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 99.01 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.01 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.01 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.0 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.99 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.99 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.97 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 98.97 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.97 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.97 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.95 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 98.94 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.94 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.93 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.92 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.92 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.92 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.92 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.92 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.92 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.91 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.91 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.9 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.9 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.89 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.89 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.88 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.86 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.86 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.86 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.86 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.86 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.85 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.84 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.82 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.82 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.81 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.8 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.8 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.78 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.77 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.76 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.74 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.72 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.72 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.71 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.71 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.68 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.67 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.66 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.66 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.64 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.64 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.63 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.63 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.63 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.63 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.62 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.61 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.61 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.6 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.55 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.55 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.54 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.52 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.51 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.5 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.5 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.5 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.48 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.48 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.44 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.43 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.42 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.42 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.41 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.4 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.4 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.39 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.38 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.38 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.38 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.36 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.34 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.31 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.3 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.29 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.27 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.26 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.26 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.25 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.25 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.24 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.23 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.21 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.21 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.2 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.19 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.17 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.16 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.16 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.15 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.13 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.12 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.09 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.08 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.07 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.06 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.05 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.05 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.02 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.01 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.0 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.99 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.98 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.98 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.96 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.93 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.92 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.91 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.91 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.89 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.84 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.83 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.81 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.8 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.8 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.79 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.77 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.77 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.76 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.75 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.71 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.69 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.69 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.6 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.59 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.58 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.58 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.57 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.56 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.56 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.55 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.54 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.52 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.41 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.39 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.35 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.34 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.3 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.28 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.22 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.21 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.19 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.09 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.0 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.96 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.91 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.85 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.85 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.78 |
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-99 Score=876.23 Aligned_cols=682 Identities=40% Similarity=0.713 Sum_probs=591.5
Q ss_pred CCCCCCCccCCceeccccCceecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcEEe
Q psy4818 20 TGPYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQ 99 (734)
Q Consensus 20 ~~~~P~~~~~~~~~~~~hg~~~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 99 (734)
++.||+|+|+|++ +++||+++.|||+||||.++|++++||++||+||+++|++++++++|++||+++++.+++++|.++
T Consensus 9 ~~~~p~~~~~~~~-~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 87 (693)
T 3iuj_A 9 RLHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKEKLAASWNYAKEGAPFRE 87 (693)
T ss_dssp -CCCCCCCCCCCE-EEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEECCCEEE
T ss_pred CCCCCCCCCCCeE-EEeCCccccCCchhhcCCCCHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHhhccccCCCCEEE
Confidence 4679999999965 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC
Q psy4818 100 ENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179 (734)
Q Consensus 100 g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~ 179 (734)
|+++||+++.++++++.+||++ .++++++|||+|++++++++.+.+++|||||++|||+.+.+|+++.+|+++|+++|+
T Consensus 88 g~~~y~~~~~~~~~~~~~~r~~-~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~ 166 (693)
T 3iuj_A 88 GRYHYFFKNDGLQNQNVLWRQQ-EGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ 166 (693)
T ss_dssp TTEEEEEEECSSCSSCEEEEEC-TTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS
T ss_pred CCEEEEEEEcCCCceeEEEEeC-CCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC
Confidence 9999999999999999999976 467789999999999998889999999999999999999999999999999999999
Q ss_pred cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCC-CCeeEEEEEEe
Q psy4818 180 DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPN-GRSLGLHSEVT 258 (734)
Q Consensus 180 ~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~-~~~~~~~~~~S 258 (734)
.+.++..++++.+++|| ||++|+|++.+.. +.+..++.+++.+||+|++++++.++++++++++ ++.++.++.||
T Consensus 167 ~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~---~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S 242 (693)
T 3iuj_A 167 PLETPLKDVKFSGISWL-GNEGFFYSSYDKP---DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT 242 (693)
T ss_dssp EEEEEEEEEESCCCEEE-TTTEEEEEESSCC---C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC
T ss_pred CCccccCCceeccEEEe-CCCEEEEEEecCc---ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc
Confidence 87777666655789999 9999999997642 1122344567889999999999888899999876 56677889999
Q ss_pred cCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCC
Q psy4818 259 DCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNP 338 (734)
Q Consensus 259 pDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 338 (734)
|||++|++........++||++|++++ ...+..+.........+|+++|++|||++++++++++|++++++++
T Consensus 243 pDg~~l~~~~~~~~~~~~i~~~d~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 243 EDDRFLLISAANSTSGNRLYVKDLSQE-------NAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp TTSCEEEEEEESSSSCCEEEEEETTST-------TCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CCCCEEEEEEccCCCCcEEEEEECCCC-------CCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 999999998876555579999999873 1245666665555556699999999999999888999999999887
Q ss_pred CCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEec
Q psy4818 339 CEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss 417 (734)
...+|+.++++.+ .++ .+.. ++++|++...+++.++|+++++. |+..+.+..+ .+.+..++.+++++.+++.+++
T Consensus 316 ~~~~~~~l~~~~~-~~~-~~s~-~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 316 GPAHWRDLIPERQ-QVL-TVHS-GSGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp CGGGCEEEECCCS-SCE-EEEE-ETTEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred CccccEEEecCCC-CEE-EEEE-ECCEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 6556888998874 445 5544 45899999999999999999995 6556778776 5677788888999999999999
Q ss_pred CCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCC
Q psy4818 418 FLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG 497 (734)
Q Consensus 418 ~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg 497 (734)
+++|+++|.+|+ +++ +.++++.... .+++..+.++++++++.||.+|++++++|++...+++.|+||++|||
T Consensus 392 ~~tP~~l~~~d~-----~~g--~~~~l~~~~~-~~~~~~~~~~~~~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg 463 (693)
T 3iuj_A 392 YAQPPTLYRFEP-----KSG--AISLYRASAA-PFKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGG 463 (693)
T ss_dssp SSSCCEEEEECT-----TTC--CEEEEECCCS-SCCGGGEEEEEEEEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCC
T ss_pred CCCCCEEEEEEC-----CCC--eEEEEEeCCC-CcChhhCeeEEEEEecCCCcEEEEEEEecCCCCCCCCccEEEEECCC
Confidence 999999999999 566 5677776554 47777889999999999999999999999987667889999999999
Q ss_pred CCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcCh
Q psy4818 498 YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 577 (734)
Q Consensus 498 ~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~ 577 (734)
++....+.|......+++ +||+|+++|+||+|++|..|+.++...++.+.++|+++++++|++++++|++||+|+|+|+
T Consensus 464 ~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~ 542 (693)
T 3iuj_A 464 FDVSLTPSFSVSVANWLD-LGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSN 542 (693)
T ss_dssp TTCCCCCCCCHHHHHHHH-TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETH
T ss_pred CCcCCCCccCHHHHHHHH-CCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECH
Confidence 999999999987655555 6999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHH-HHHHHhCCccCCCCCCCCCccCCcEEE
Q psy4818 578 GGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTH-FHNLLSYSPLHNIKVPPNNTQYPATLV 656 (734)
Q Consensus 578 GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~sp~~~~~~p~~~~~~P~~Li 656 (734)
||++++++++++|++|+++|+.+|++|+..+..++.+..|..+||+|.+++. ++.+.++||+++++.. +++||+||
T Consensus 543 GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~sp~~~~~~~---~~~Pp~Li 619 (693)
T 3iuj_A 543 GGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPG---VSYPSTMV 619 (693)
T ss_dssp HHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCTTSCHHHHHHHHHHCHHHHCCTT---CCCCEEEE
T ss_pred HHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHcCCccCHHHHHHHHHhcCHHHhhccc---CCCCceeE
Confidence 9999999999999999999999999999988877777778889999987777 8889999999999862 78999999
Q ss_pred EecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCCCCCC
Q psy4818 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPDMP 734 (734)
Q Consensus 657 ~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 734 (734)
+||++|.+|+++++.+++++|++. +.+|+++++++++++||++..+..++++.++.+++||.++|+....|..|
T Consensus 620 ~~G~~D~~v~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~p 693 (693)
T 3iuj_A 620 TTADHDDRVVPAHSFKFAATLQAD----NAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRELPRQP 693 (693)
T ss_dssp EEESSCSSSCTHHHHHHHHHHHHH----CCSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHTTCSSCSSCC
T ss_pred EecCCCCCCChhHHHHHHHHHHhh----CCCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999998 44468999999999999998765556889999999999999998777765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-96 Score=852.18 Aligned_cols=699 Identities=46% Similarity=0.872 Sum_probs=603.8
Q ss_pred CCCCCCccCC-ceeccccCceecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcEEe
Q psy4818 21 GPYPKVRKDE-TVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQ 99 (734)
Q Consensus 21 ~~~P~~~~~~-~~~~~~hg~~~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 99 (734)
+.||+|+|+| ++ +++||+++.|||+||||.+++++++||++||++++++|++++++++|+++++.++..++.+.|+++
T Consensus 4 ~~~p~~~~~~~~~-~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~d 82 (710)
T 2xdw_A 4 FQYPDVYRDETAI-QDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKK 82 (710)
T ss_dssp SCCCCCCCCTTCE-EEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHCSCEECCCEEE
T ss_pred CCCCCCCCCCCee-eeeCCcEEccCChhhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEE
Confidence 5799999999 65 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC
Q psy4818 100 ENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179 (734)
Q Consensus 100 g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~ 179 (734)
|+++||+++++++++..||+++..++++++|+|++++++++...+.+++|||||++|||+++.+|+++++|+++|+++|+
T Consensus 83 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~ 162 (710)
T 2xdw_A 83 GKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK 162 (710)
T ss_dssp TTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE
T ss_pred CCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC
Confidence 99999999998888889999987788899999999999888888999999999999999999999999999999999999
Q ss_pred cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec
Q psy4818 180 DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD 259 (734)
Q Consensus 180 ~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp 259 (734)
.+..+..+..+.+++|||||+.|+|++.+......++..++..++.+||+|++++++.+++++++.++++.+..++.|||
T Consensus 163 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp 242 (710)
T 2xdw_A 163 ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242 (710)
T ss_dssp EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT
T ss_pred CCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC
Confidence 87666665556789999999999999876432111233444567789999999998877788888766566778899999
Q ss_pred CCcEEEEEEecCCC-CceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCC
Q psy4818 260 CGRYLLVSTSNNTQ-GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNP 338 (734)
Q Consensus 260 DG~~l~~~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 338 (734)
||++|++...+... .++||++|+++.. ..+.....+..+..........|++||++|||.++.++++++|++++++++
T Consensus 243 Dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 243 DGRYVLLSIREGCDPVNRLWYCDLQQES-NGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp TSCEEEEEEECSSSSCCEEEEEEGGGSS-SSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CCCEEEEEEEccCCCccEEEEEECcccc-cccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999998876544 4899999997510 000001134556555555555699999999999998888899999999876
Q ss_pred CCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecC
Q psy4818 339 CEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSF 418 (734)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~ 418 (734)
....|+.++++.+...+..+.+.+++++++.+..++..+|+++++.+|+.++.|+.+.+.+..++++++++.++++++|+
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~ 401 (710)
T 2xdw_A 322 EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSF 401 (710)
T ss_dssp CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECS
T ss_pred CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCC
Confidence 54457889988755577777777568999999999999999999977887788888777888888889999999999999
Q ss_pred CCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCC
Q psy4818 419 LQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY 498 (734)
Q Consensus 419 ~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~ 498 (734)
++|+++|.+|+ ++++.+.++++...++.+++..+.++++++++.||.+|++++++|+++..+++.|+||++|||+
T Consensus 402 ~~P~~i~~~d~-----~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~~~~~P~vl~~hGg~ 476 (710)
T 2xdw_A 402 LSPGIIYHCDL-----TKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476 (710)
T ss_dssp SCCCEEEEEET-----TSSSCCCEEEEECCCTTCCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCT
T ss_pred CCCCEEEEEEC-----CCCccceEEeeecccCCcCccccEEEEEEEEcCCCCEEEEEEEecCCCCCCCCccEEEEEcCCC
Confidence 99999999999 5662116777776666678888899999999999999999999999876678899999999999
Q ss_pred CCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChH
Q psy4818 499 GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNG 578 (734)
Q Consensus 499 ~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~G 578 (734)
+....+.|+..+..+++++||+|+++|+||+|++|..|+..+...++.+.++|+++++++|++++++|++||+|+|+|+|
T Consensus 477 ~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~G 556 (710)
T 2xdw_A 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNG 556 (710)
T ss_dssp TCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHH
T ss_pred CCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHH
Confidence 99888889887766666269999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCC-----CCCCCccCCc
Q psy4818 579 GLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIK-----VPPNNTQYPA 653 (734)
Q Consensus 579 G~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~-----~p~~~~~~P~ 653 (734)
|++++++++++|++|+++|+.+|++|+..+...+.+..|..+||+|.+++.++.+.++||++++. . +++||
T Consensus 557 G~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~----~~~pP 632 (710)
T 2xdw_A 557 GLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPS 632 (710)
T ss_dssp HHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTT----CCCCE
T ss_pred HHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhHHHhCCCCCCHHHHHHHHHhCcHhhhccccccc----CCCCc
Confidence 99999999999999999999999999998877776677888899998888888999999999998 5 78877
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCC
Q psy4818 654 TLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYY 730 (734)
Q Consensus 654 ~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 730 (734)
+||+||++|.+|+++++.+++++|++...++..+|+++++++++++||++..+..++.+..+.+++||.++|+..+.
T Consensus 633 ~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 709 (710)
T 2xdw_A 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWI 709 (710)
T ss_dssp EEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999998633333447899999999999999877655678899999999999988753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-94 Score=834.33 Aligned_cols=678 Identities=36% Similarity=0.646 Sum_probs=587.0
Q ss_pred CCCCCccCCceeccccCceecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcEEeCC
Q psy4818 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQEN 101 (734)
Q Consensus 22 ~~P~~~~~~~~~~~~hg~~~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~ 101 (734)
.||+|+|+|++ +++||+++.|||+||||.++|++++||++||+|++++|++++++++|++||+++++.++.+.|+++|+
T Consensus 2 ~~p~~~~~~~~-~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~dG~ 80 (695)
T 2bkl_A 2 SYPATRAEQVV-DTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREALAARFKELFYTDSVSTPSRRNG 80 (695)
T ss_dssp CCSCCCCCCCE-EEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHSCCEECCCEEETT
T ss_pred CCCCCCCCCee-eeeCCcEEecCChHhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEECC
Confidence 58999999965 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc
Q psy4818 102 NYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY 181 (734)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~ 181 (734)
++||+++++++++..||+++..++++++|+|++++++++...+.+++|||||++|||+.+.+|+++.+|+++|+++|+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~ 160 (695)
T 2bkl_A 81 RFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS 160 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC
T ss_pred EEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc
Confidence 99999999888889999999878889999999999988888999999999999999999999999999999999999977
Q ss_pred -cccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC
Q psy4818 182 -PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC 260 (734)
Q Consensus 182 -~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD 260 (734)
.....+..+..++|||||+.|+|++.+.. ..+..++..++.+||+|++++++.+++++++.+++..++.++.||||
T Consensus 161 ~~~~~~~~~~~~~~wspDg~~l~~~~~d~~---~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD 237 (695)
T 2bkl_A 161 KVDVIEGGKYATPKWTPDSKGFYYEWLPTD---PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD 237 (695)
T ss_dssp SSCCBSCCTTCCCEECTTSSEEEEEECCCC---TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT
T ss_pred CCcccCcccccceEEecCCCEEEEEEecCC---CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC
Confidence 54555554578999999999999987542 11233445677899999999988777889988766667788999999
Q ss_pred CcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCC
Q psy4818 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCE 340 (734)
Q Consensus 261 G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 340 (734)
|++|++........++||+++..+ ..++.+.........++.++|+ +||.++.++.+++|++++++++..
T Consensus 238 G~~l~~~~~~~~~~~~l~~~~~~~---------~~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~ 307 (695)
T 2bkl_A 238 GKYLFVYILRGWSENDVYWKRPGE---------KDFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPAR 307 (695)
T ss_dssp SCCEEEEEEETTTEEEEEEECTTC---------SSCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSG
T ss_pred CCEEEEEEeCCCCceEEEEEcCCC---------CceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCc
Confidence 999999887643447999997755 2345566555545555558999 999999877789999999987654
Q ss_pred CCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCC
Q psy4818 341 KNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFL 419 (734)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~ 419 (734)
.+|+.++++.+...+.++.+. ++++++....++..+|+++++ +|+.++.+..+ .+.+..++++++++.+++.++|++
T Consensus 308 ~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 308 ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETT
T ss_pred cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 457889987755667777776 489999999999999999998 57666778776 677778888899999999999999
Q ss_pred CCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCC
Q psy4818 420 QPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYG 499 (734)
Q Consensus 420 ~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~ 499 (734)
+|+++|.+|+ +++ +.++++..... +++..+.++++++++.||.+|++++++|++++.+++.|+||++|||++
T Consensus 386 ~P~~v~~~d~-----~~g--~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~ 457 (695)
T 2bkl_A 386 TPRQIYKTSV-----STG--KSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFN 457 (695)
T ss_dssp EEEEEEEEET-----TTC--CEEEEEECCCS-SCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCCCEEEECCCCTT
T ss_pred CCCEEEEEEC-----CCC--cEEEEecCCCC-CCHHHCeEEEEEEECCCCCEEEEEEEECCCCCCCCCccEEEEECCCCc
Confidence 9999999999 567 56777765544 777778999999999999999999999998766788999999999999
Q ss_pred CcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHH
Q psy4818 500 VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGG 579 (734)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG 579 (734)
....+.|......++. +||+|+++|+||+|++|..|+..+...++.+.++|+++++++|++++++|++||+|+|+|+||
T Consensus 458 ~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG 536 (695)
T 2bkl_A 458 VNMEANFRSSILPWLD-AGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGG 536 (695)
T ss_dssp CCCCCCCCGGGHHHHH-TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHH
T ss_pred cccCCCcCHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHH
Confidence 9888888876655554 699999999999999999999998888888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEec
Q psy4818 580 LLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTG 659 (734)
Q Consensus 580 ~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g 659 (734)
++++++++++|++|+++|+.+|++|+..+.....+..|..+||+|.+++.++.+.++||+++++.. ..+||+||+||
T Consensus 537 ~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~---~~~~P~Li~~G 613 (695)
T 2bkl_A 537 LLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVRPD---VRYPALLMMAA 613 (695)
T ss_dssp HHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCSS---CCCCEEEEEEE
T ss_pred HHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCCCHHHHHHHHhcChHhhhhhc---CCCCCEEEEee
Confidence 999999999999999999999999999877666666777889999888889999999999999862 34577999999
Q ss_pred CCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCCC
Q psy4818 660 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731 (734)
Q Consensus 660 ~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 731 (734)
++|.+|+++++.+++++|++. ...|+++++++++++||++..+..+..+..+.+++||.++|+..+.+
T Consensus 614 ~~D~~v~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 681 (695)
T 2bkl_A 614 DHDDRVDPMHARKFVAAVQNS----PGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQGAQ 681 (695)
T ss_dssp TTCSSSCTHHHHHHHHHHHTS----TTCCSCEEEEEETTCBTTBCSCHHHHHHHHHHHHHHHHHHTTC----
T ss_pred CCCCCCChHHHHHHHHHHHhh----ccCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999983 11278999999999999997765556788899999999999877554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-92 Score=821.38 Aligned_cols=679 Identities=36% Similarity=0.639 Sum_probs=572.8
Q ss_pred CCCCCCCccCCceeccccCceecCCCcccCCC--CChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcE
Q psy4818 20 TGPYPKVRKDETVEDDYHGMKIKDPYRWLEYP--HCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQ 97 (734)
Q Consensus 20 ~~~~P~~~~~~~~~~~~hg~~~~D~y~wled~--~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~ 97 (734)
.+.||+|+|+|++ +++||+++.|||+||||. +++++++||++||+|++++|++++++++|+++|+.++..++.+.|+
T Consensus 37 ~~~~p~~~~~~~~-~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~aen~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~ 115 (741)
T 1yr2_A 37 LPPYPASPQVPLV-EDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLPERAALEKRMKALIDYERFGLPQ 115 (741)
T ss_dssp -CCCCCCCCCCCE-EEETTEEEECTTGGGGSCTTTCHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEECCCE
T ss_pred cCCCCCCCCCCee-eeeCCcEEccCcHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcccccCCCE
Confidence 3678999999965 999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCC---CCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEE
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNL---TGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKD 174 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~d 174 (734)
++|+++||.++++++++..||+++.. ++++++|+|+|++++++...+.+++|||||++|||+++.+|+++.+|+++|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 99999999999988888999999876 788999999999998877889999999999999999999999999999999
Q ss_pred CCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEE
Q psy4818 175 VDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLH 254 (734)
Q Consensus 175 l~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~ 254 (734)
+++|+.+.....+..+.+++|||| ++|+|++.+... ..+..++.+++.+||+|++++++.+++++++.++++.++.+
T Consensus 196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~--~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPK--EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC----------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcc--cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999998776555555578999999 999999865421 01122334567899999999988778889988766656788
Q ss_pred EEEecCCcEEEEEEecCC-CCceEEEEeCCCCCCCcccCCCC-ceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEE
Q psy4818 255 SEVTDCGRYLLVSTSNNT-QGSDLHYFDLHSLPDGKISGKFP-LKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVT 332 (734)
Q Consensus 255 ~~~SpDG~~l~~~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~-~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~ 332 (734)
+.|||||++|++...+.. ..++||++|++++. .. +..+..........+++||++|+|.++.++.+++|++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~-------~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~ 345 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK-------IGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVR 345 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTE-------ECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEE
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCC-------CcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEE
Confidence 999999999999887643 24799999998721 12 4556555545555578999999999998888899999
Q ss_pred EecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceE
Q psy4818 333 INLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEV 411 (734)
Q Consensus 333 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l 411 (734)
++++++. .+|+.++++. ...+.++.+.+ +++++....++..+|+++++ +|+..+.++.+ .+.+..++++++++.+
T Consensus 346 ~d~~~~~-~~~~~l~~~~-~~~l~~~~~~~-~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l 421 (741)
T 1yr2_A 346 VDLSGST-PRFDTVVPES-KDNLESVGIAG-NRLFASYIHDAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHA 421 (741)
T ss_dssp EECSSSS-CEEEEEECCC-SSEEEEEEEEB-TEEEEEEEETTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred EeCCCCc-cccEEEecCC-CCeEEEEEEEC-CEEEEEEEECCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEE
Confidence 9998753 3478888876 44566666665 89999999999999999998 57666778776 6778788889999999
Q ss_pred EEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEE
Q psy4818 412 FYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVI 491 (734)
Q Consensus 412 ~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~v 491 (734)
++.++|+++|+++|.+|+ +++ +.++++... ..+++..+..+++++++.||.+|++++++|++. +++.|+|
T Consensus 422 ~~~~ss~~~P~~i~~~d~-----~tg--~~~~l~~~~-~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~--~~~~p~v 491 (741)
T 1yr2_A 422 YLSFSSFTQPATVLALDP-----ATA--KTTPWEPVH-LTFDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTL 491 (741)
T ss_dssp EEEEEETTEEEEEEEEET-----TTT--EEEECSCCC-CSSCGGGEEEEEEEEECTTSCEEEEEEEEETTC--CSCCCEE
T ss_pred EEEEcCCCCCCEEEEEEC-----CCC--cEEEEecCC-CCCChhHCEEEEEEEEcCCCCEEEEEEEecCCC--CCCCcEE
Confidence 999999999999999999 566 566666533 247777889999999999999999999999875 5789999
Q ss_pred EEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEE
Q psy4818 492 IYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYIT 571 (734)
Q Consensus 492 v~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 571 (734)
|++|||++....+.|+.....+ +++||+|+++|+||+|++|..|+..+...++.+.++|+++++++|++++++|++||+
T Consensus 492 l~~hGg~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ri~ 570 (741)
T 1yr2_A 492 LYGYGGFNVALTPWFSAGFMTW-IDSGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLA 570 (741)
T ss_dssp EECCCCTTCCCCCCCCHHHHHH-HTTTCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSSCTTCEE
T ss_pred EEECCCCCccCCCCcCHHHHHH-HHCCcEEEEEecCCCCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHEE
Confidence 9999999988888888776544 457999999999999999999999988888889999999999999999999999999
Q ss_pred EEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccC
Q psy4818 572 IMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQY 651 (734)
Q Consensus 572 i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~ 651 (734)
|+|+|+||++++++++++|++|+++|+.+|++|+..+.....+..|..+||+|.+++.++.+.++||+++++.. +++
T Consensus 571 i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~---~~~ 647 (741)
T 1yr2_A 571 IEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSG---VDY 647 (741)
T ss_dssp EEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTTSHHHHHHHHTTCGGGCCCTT---SCC
T ss_pred EEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCCCHHHHHHHHHcCchhhhhcc---CCC
Confidence 99999999999999999999999999999999999877766666777889999888889999999999999852 777
Q ss_pred CcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCCC
Q psy4818 652 PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731 (734)
Q Consensus 652 P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 731 (734)
||+||+||++|.+|+++++.+++++|++. +..|+++++++++++||++..+..++++..+.+++||.++|+..+.+
T Consensus 648 ~P~Li~~G~~D~~v~~~~~~~~~~~l~~~----~~~g~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 723 (741)
T 1yr2_A 648 PAILVTTADTDDRVVPGHSFKYTAALQTA----AIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGLTPRP 723 (741)
T ss_dssp CEEEEEECSCCSSSCTHHHHHHHHHHHHS----CCCSSCEEEEEC---------CHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCEEEEeeCCCCCCChhHHHHHHHHHhhh----hcCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 77999999999999999999999999983 22289999999999999998766556788999999999999877544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-91 Score=814.47 Aligned_cols=665 Identities=23% Similarity=0.339 Sum_probs=560.5
Q ss_pred CCCCCCccCCceeccccC---------------ceecCCCcccCCCC--ChhHHHHHHHhhhhhHHhhcCC-chHHHHHH
Q psy4818 21 GPYPKVRKDETVEDDYHG---------------MKIKDPYRWLEYPH--CAETQIFNFMQNNISNPYCQNH-TDREAIKE 82 (734)
Q Consensus 21 ~~~P~~~~~~~~~~~~hg---------------~~~~D~y~wled~~--~~~~~~~~~~q~~~~~~~l~~~-~~~~~l~~ 82 (734)
+.||+|+|+|++ ++ || +++.|||+||||.+ |||+++||++||+|++++|+++ +++++|++
T Consensus 31 ~~~p~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~d~y~wl~d~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~~ 108 (751)
T 2xe4_A 31 AQPPIAAKKPHR-VT-LGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYA 108 (751)
T ss_dssp CCCCCCCCCCCE-EE-ESCCTTSCCCSSCCSSCEEEECTTGGGCCTTSCCHHHHHHHHHHHHHHHHHHGGGHHHHHHHHH
T ss_pred CCCCCCCCCCee-ec-CCCcccccccccccCCCeEEeeCCccccCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 679999999976 88 99 99999999999998 9999999999999999999999 99999999
Q ss_pred HHHHhccCCccCCcEEeCCeEEEEEEcCCCCeeEEEEEeC---CCC--CeEEEeCCCCcCCCC-cEEEeeEEeC-CCCcE
Q psy4818 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRN---LTG--STEVFLDPNKLSKDG-TTALKLYAFS-DNGKH 155 (734)
Q Consensus 83 ~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~---~~g--~~~~l~d~~~~~~~~-~~~~~~~~~S-PDG~~ 155 (734)
||++++..++.+.|.++|+++||+++.++++++++||++. .++ .+++|+|+|++++++ ++.++.++|| |||++
T Consensus 109 e~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~ 188 (751)
T 2xe4_A 109 EHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDL 188 (751)
T ss_dssp HHHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCE
T ss_pred HHHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCE
Confidence 9999999999999999999999999999898999999986 455 689999999999884 4589999999 99999
Q ss_pred EEEEEeCCCCceEEEEEEECCCC-CcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCC
Q psy4818 156 FAYCLSKSGSDWNTLHIKDVDTG-KDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGT 234 (734)
Q Consensus 156 la~~~~~~g~~~~~l~v~dl~~g-~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t 234 (734)
|||+.+.+|+++++||++|+++| +.+...+.+. +.+++|||||++|+|++.+. ..++.+||++++++
T Consensus 189 lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~WspDg~~l~y~~~d~-----------~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 189 VAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGPDHTSLFYVTKDE-----------TLRENKVWRHVMGK 256 (751)
T ss_dssp EEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECSSTTEEEEEEECT-----------TCCEEEEEEEETTS
T ss_pred EEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEecCCCEEEEEEECC-----------CCCCCEEEEEECCC
Confidence 99999999999999999999999 7655444444 47899999999999998753 24456899999999
Q ss_pred CCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc--eeeeccccceEEEEEe
Q psy4818 235 EQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL--KTVIPGMDHHHEIIAN 312 (734)
Q Consensus 235 ~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~s~ 312 (734)
++.++++++++++.. +..++.|||||++|++...+. ..++||++|++++. ..+ +.++...... .|++
T Consensus 257 ~~~~~~lv~~~~~~~-~~~~~~~SpDg~~l~~~~~~~-~~~~l~~~d~~~~~-------~~~~~~~l~~~~~~~--~~s~ 325 (751)
T 2xe4_A 257 LQSEDVCLYEEHNPL-FSAFMYKAADTNTLCIGSQSP-ETAEVHLLDLRKGN-------AHNTLEIVRPREKGV--RYDV 325 (751)
T ss_dssp CGGGCEEEEECCCTT-CEEEEEECTTSSEEEEEEECS-SCEEEEEEESSSCT-------TCCCEEESSCCCTTC--CEEE
T ss_pred CchhcEEEEecCCCc-eEEEEEECCCCCEEEEEecCC-CCceEEEEECCCCC-------CCceeEEeecCCCCc--eEEE
Confidence 877778888876544 777899999999999988654 35899999998731 122 3343322211 1444
Q ss_pred c---CCeEEEEeCCC-CCCceEEEEecCCCCCCCceE-eecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEEC----
Q psy4818 313 N---GPELIVKTTKN-APKGKVVTINLNNPCEKNWKT-LIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL---- 383 (734)
Q Consensus 313 d---g~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl---- 383 (734)
+ |+.|||+++++ +.+++|++++++++ .+|+. ++++.....+..+.+.+ +++++....++..+|+++++
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~--~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMMADSQD 402 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTST--TCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEECCTTT
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCc--ccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEeccccc
Confidence 4 99999999987 67889999998753 23777 88877555667776664 89999999999999999996
Q ss_pred ---CCCceeeeeCCC-CceEEeecc----CcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCC-CCCC
Q psy4818 384 ---NTGKRLHSFPLD-LGQITHISG----RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVP-EFEP 454 (734)
Q Consensus 384 ---~~g~~~~~l~~~-~g~v~~~~~----~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 454 (734)
.+|+..+.|+++ .+.+.+++. +.+++.+++.++++++|+.+|.+|+ .++ +.++++....+ .+++
T Consensus 403 ~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~-----~~~--~~~~l~~~~~~~~~~~ 475 (751)
T 2xe4_A 403 GVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSP-----QDH--SRTAVKVREVGGGFDA 475 (751)
T ss_dssp SCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECT-----TTC--CEEEEEECCCCTTCCG
T ss_pred ccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEEC-----CCC--cEEEEeccccccCCCc
Confidence 455514667665 333335543 4577889999999999999999999 566 56777766554 5777
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
..+.++++++++.||.+|++++++|++.+++++.|+||++|||++....+.|+..... |+++||+|+++|+||+|++|.
T Consensus 476 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~-l~~~G~~v~~~d~RG~g~~G~ 554 (751)
T 2xe4_A 476 ANYKVERRFATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLP-YCDRGMIFAIAHIRGGSELGR 554 (751)
T ss_dssp GGEEEEEEEEECTTCCEEEEEEEEETTSCTTSCCCEEEECCCCTTCCCCCCCCGGGHH-HHTTTCEEEEECCTTSCTTCT
T ss_pred cceEEEEEEEECCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCcCCCCcchHHHHH-HHhCCcEEEEEeeCCCCCcCc
Confidence 7889999999999999999999999987667889999999999998888888876554 455799999999999999999
Q ss_pred hhhh-ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc-c
Q psy4818 535 DWHN-AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF-T 612 (734)
Q Consensus 535 ~~~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~ 612 (734)
.|+. .+...++.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|++|+++|+.+|++|+..++.. .
T Consensus 555 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~ 634 (751)
T 2xe4_A 555 AWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPS 634 (751)
T ss_dssp HHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTT
T ss_pred chhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhhcccC
Confidence 9999 8888888899999999999999999999999999999999999999999999999999999999998775321 1
Q ss_pred cC---cccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCC
Q psy4818 613 IA---YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN 689 (734)
Q Consensus 613 ~~---~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~ 689 (734)
.. ..| .+||+|.+++.++.+.++||+.+++. +++||+||+||++|.+||++++.+++++|++. ...+.
T Consensus 635 ~~~~~~~~-~~~g~p~~~~~~~~~~~~sp~~~~~~----~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~----~~~~~ 705 (751)
T 2xe4_A 635 IPLTTGEW-EEWGNPNEYKYYDYMLSYSPMDNVRA----QEYPNIMVQCGLHDPRVAYWEPAKWVSKLREC----KTDNN 705 (751)
T ss_dssp STTHHHHT-TTTCCTTSHHHHHHHHHHCTGGGCCS----SCCCEEEEEEETTCSSSCTHHHHHHHHHHHHH----CCSCC
T ss_pred cccchhhH-HHcCCCCCHHHHHHHHhcChhhhhcc----CCCCceeEEeeCCCCCCCHHHHHHHHHHHHhc----CCCCc
Confidence 11 123 56788877888888999999999987 89988999999999999999999999999998 33356
Q ss_pred cEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCC
Q psy4818 690 PLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYY 730 (734)
Q Consensus 690 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 730 (734)
++.+++++++||++.......++..+.+++||.++|+..+.
T Consensus 706 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~~~~ 746 (751)
T 2xe4_A 706 EILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKSTVR 746 (751)
T ss_dssp CEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred eEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCCCch
Confidence 78888899999999876655678888999999999987654
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-87 Score=757.06 Aligned_cols=658 Identities=22% Similarity=0.356 Sum_probs=556.6
Q ss_pred cccCceecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCC-ccCCcEEeCCeEEEEEEcCCCC
Q psy4818 35 DYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYE-KYSAPQRQENNYFYFHNKGLQN 113 (734)
Q Consensus 35 ~~hg~~~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~~~p~~~g~~~~~~~~~~~~~ 113 (734)
.-||+++.|||+||||.+++++++||++||++|.++|+.+|.+++|++|++++++.+ +++.|...|+++|+.++++.++
T Consensus 14 ~~~~~~~~Dpy~wLEd~~~~~~~~wv~aqN~~T~~~l~~~p~~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~~~~ 93 (711)
T 4hvt_A 14 NNKQIFNPKETKFLEEAEGVEALEWAKERTSKTEKALQAMQEYKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDDKNP 93 (711)
T ss_dssp ------CHHHHGGGGSSSSSHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCSSCS
T ss_pred CCCceeeCCCchhhcCCCCHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHhccccccCCcEEECCEEEEEEecCCCC
Confidence 458999999999999999999999999999999999999999999999999999887 8999999999999999999888
Q ss_pred eeEEEEEeCC------CCCeEEEeCCCCcCCC-Cc-EEEeeEE-eCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc
Q psy4818 114 HSILYVQRNL------TGSTEVFLDPNKLSKD-GT-TALKLYA-FSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV 184 (734)
Q Consensus 114 ~~~l~~~~~~------~g~~~~l~d~~~~~~~-~~-~~~~~~~-~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~ 184 (734)
| .|||+... +++|++|||+|+|+++ ++ +.+.+.+ +||||+++||+.+.+|+++..|+++|++|++.+.+.
T Consensus 94 ~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~ 172 (711)
T 4hvt_A 94 Q-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG 172 (711)
T ss_dssp S-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC
T ss_pred c-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC
Confidence 7 89998543 6789999999999977 65 8899988 999999999999999999999999999999987765
Q ss_pred cc-c--------cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEE
Q psy4818 185 LK-N--------VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS 255 (734)
Q Consensus 185 ~~-~--------~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~ 255 (734)
+. . ++++.++|. |+++++|.+...+ +..++++++.+||+|++||++.++++||+++++. +..++
T Consensus 173 ~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~-~~~~~ 245 (711)
T 4hvt_A 173 FEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHK-----NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEY-IYVSA 245 (711)
T ss_dssp SCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCST-----TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTS-CEEEE
T ss_pred cccccccccccccccceeeEE-CCCEEEEEeCCCC-----CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCc-eEEEE
Confidence 44 2 234667997 7788998765332 3466778899999999999999999999987765 56778
Q ss_pred EEecCCcE----EEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCC-------
Q psy4818 256 EVTDCGRY----LLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKN------- 324 (734)
Q Consensus 256 ~~SpDG~~----l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~------- 324 (734)
..++|+++ +++........+++|+.+++. +. .++.++....+.. .....++++|+.+..+
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 316 (711)
T 4hvt_A 246 GKLLSDTISSSLIFISANKDFYNYDNYILDTKY-KN------LKLQKINMPSDAT--LQGSFKEYVFWLLRSDWKFKSHN 316 (711)
T ss_dssp EESSCTTTCSSEEEEEEESSSSCEEEEEEECSS-SS------CEEEECCSCTTCE--EEEEETTEEEEECSSCEEETTEE
T ss_pred EEecCCCceEEEEEEEEecccCceeEEEEcCCC-CC------CcceEeecCCcce--EeeeECCEEEEEECccccccccc
Confidence 88999985 555544334448999999875 21 2334443333322 2233466788866432
Q ss_pred CCCceEEEEecCCCC-----CCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCc-eeee-eCCC-C
Q psy4818 325 APKGKVVTINLNNPC-----EKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGK-RLHS-FPLD-L 396 (734)
Q Consensus 325 ~~~~~l~~~d~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~-~~~~-l~~~-~ 396 (734)
.++++|++++++++. ..+|+.++++.....++++.+.+ +++++....++.++|+++++.+|+ ..+. +.++ .
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~ 395 (711)
T 4hvt_A 317 IKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK-DRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ 395 (711)
T ss_dssp ECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS-SCEEEEEEETTEEEEEEECEETTEECCCEEECCCST
T ss_pred CCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC-CEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC
Confidence 368899999998742 34688877777678888888887 789999999999999999987775 2355 6666 5
Q ss_pred ceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEE
Q psy4818 397 GQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYI 476 (734)
Q Consensus 397 g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~ 476 (734)
+.+..++.+++++.+++.++|+++|+.+|.+|+ . + +.++++... +.+++..+.++++++++.||.+|++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~-----~-~--~~~~l~~~~-~~~~~~~~~~e~v~~~s~DG~~i~~~l 466 (711)
T 4hvt_A 396 NAIFGMSSYEEEEEALITIENSIVPPTIYLWVK-----T-H--ELKIIRKAL-YSFDSENYVLEQKEATSFDGVKIPYFL 466 (711)
T ss_dssp TCEEEEECCTTCSCEEEEEECSSSCCEEEEECT-----T-S--CEEEEECCS-SCCCGGGEEEEEEEEECTTSCEEEEEE
T ss_pred eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC-----C-C--cEEEEecCC-cccCcccCeeEEEEEECCCCeEEEEEE
Confidence 677667777888899999999999999999998 5 5 566676643 357777889999999999999999999
Q ss_pred EEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHH
Q psy4818 477 IHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAA 556 (734)
Q Consensus 477 ~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~ 556 (734)
++|++.+++++.|+||++|||++.+..+.|+..+.+.|+++||+|+++|+||+|++|..|+..+...++.+.++|+++++
T Consensus 467 ~~P~~~~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav 546 (711)
T 4hvt_A 467 VYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVS 546 (711)
T ss_dssp EEETTCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHH
T ss_pred EecCCCCCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHH
Confidence 99998767789999999999999999999988765456667999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhC
Q psy4818 557 EYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY 636 (734)
Q Consensus 557 ~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 636 (734)
++|++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..+.....+..|..+||+|.+++.++.+.++
T Consensus 547 ~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~~ 626 (711)
T 4hvt_A 547 EELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKY 626 (711)
T ss_dssp HHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHH
T ss_pred HHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHHHHhCCCcCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999887766666788899999888888999999
Q ss_pred CccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHH-HhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHH
Q psy4818 637 SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL-QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMT 715 (734)
Q Consensus 637 sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 715 (734)
||+++++.. ..+||+||+||++|.+||++++.+++++| ++. |+++++++++++||++.....++++..+
T Consensus 627 SP~~~v~~i---~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~-------g~pv~l~~~p~~gHg~~~~~~~~~~~~~ 696 (711)
T 4hvt_A 627 APLENLSLT---QKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNP-------NTKTYFLESKDSGHGSGSDLKESANYFI 696 (711)
T ss_dssp CGGGSCCTT---SCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCT-------TCCEEEEEESSCCSSSCSSHHHHHHHHH
T ss_pred CHHHHHhhc---CCCCCEEEEecCCCCcCChHHHHHHHHHHHHHc-------CCCEEEEEECCCCCcCcCCcchHHHHHH
Confidence 999999872 34578999999999999999999999999 998 8999999999999999877776788889
Q ss_pred HHHHHHHHHcCCCC
Q psy4818 716 DIYVFLMKSLGLKY 729 (734)
Q Consensus 716 ~~~~fl~~~l~~~~ 729 (734)
.+++||.++|+...
T Consensus 697 ~i~~FL~~~Lg~~i 710 (711)
T 4hvt_A 697 NLYTFFANALKLKI 710 (711)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999998763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-54 Score=496.16 Aligned_cols=588 Identities=14% Similarity=0.119 Sum_probs=426.3
Q ss_pred ccCCcEEeCCeEEEEEEc-CCCCeeEEEEEeCCCCCeEEEeCCCCc--CCCCcEEEeeEEeC--CCCcE-EEEEEeCCCC
Q psy4818 92 KYSAPQRQENNYFYFHNK-GLQNHSILYVQRNLTGSTEVFLDPNKL--SKDGTTALKLYAFS--DNGKH-FAYCLSKSGS 165 (734)
Q Consensus 92 ~~~~p~~~g~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~l~d~~~~--~~~~~~~~~~~~~S--PDG~~-la~~~~~~g~ 165 (734)
....|..+|+++||.+.+ ..+....||++. .++..+.|+..... +..+.+.-..+.|| |||++ |||+.+..
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~-- 101 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRR-ADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD-- 101 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEEC-TTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT--
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEEC-CCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC--
Confidence 466677889999999874 334567888873 35565655543211 11111111244454 99999 99987642
Q ss_pred ceEEEEEEECC--C-CCcccccc-----cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCC-
Q psy4818 166 DWNTLHIKDVD--T-GKDYPEVL-----KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQ- 236 (734)
Q Consensus 166 ~~~~l~v~dl~--~-g~~~~~~~-----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~- 236 (734)
.+||++++. + ++..+.+. .......++|||||+.|+|++.+.... .......+||++++.+..
T Consensus 102 --~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 102 --QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE------GPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp --CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS------STTCEEEEEEEEETTSTTT
T ss_pred --CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC------CCCCceeEEEEEECCCCcc
Confidence 569999998 5 66443333 233446899999999999998753100 001233589999998721
Q ss_pred ---CCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCC----CCceEEEEeCC-CCCCCcccCCCCceeeeccc-cceE
Q psy4818 237 ---DKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT----QGSDLHYFDLH-SLPDGKISGKFPLKTVIPGM-DHHH 307 (734)
Q Consensus 237 ---~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~i~~~d~~-~~~~~~l~~~~~~~~l~~~~-~~~~ 307 (734)
.+...+.. .+..+...++|||||++|++...... ...+||++|++ ++.. .....+..+. ....
T Consensus 174 ~~~~~~~~l~~--~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~------~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 174 ADRSAVRELSD--DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF------ADTRTLLGGPEEAIA 245 (662)
T ss_dssp TCGGGSEESSC--SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE------EEEEEEEEETTBCEE
T ss_pred ccCCceeEEEe--cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc------cccEEeCCCCCceEc
Confidence 11222220 22336677999999999999876542 22689999998 4210 0233444332 2233
Q ss_pred E-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCce-------eEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 308 E-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRT-------LDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 308 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
. .|+|||+ ++|.++.++ ..+|+++++++++ ++.++....... +..+.+.+++++++.... +..+|+
T Consensus 246 ~~~~spdg~-l~~~~~~~~-~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 246 QAEWAPDGS-LIVATDRTG-WWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp EEEECTTSC-EEEEECTTS-SCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred ceEECCCCe-EEEEECCCC-CeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 3 3999999 888888754 5579999987665 566665431110 223444445788888888 888999
Q ss_pred EEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCc-e
Q psy4818 380 LHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLF-Q 458 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 458 (734)
++|+.+|+ ++.|+.+.+.+..+. +++++.+++..++...|..+|.+|+ +++ +.+.++....+.+++..+ .
T Consensus 320 ~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~-----~~g--~~~~l~~~~~~~~~~~~~~~ 390 (662)
T 3azo_A 320 ILDPESGE-LVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDT-----VTG--RARTIGARHTDPVDPAYYPE 390 (662)
T ss_dssp EEETTTTE-EEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEET-----TTC--CEEEEESCCCCSSCGGGSCC
T ss_pred EEECCCCc-EEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEEC-----CCC--ceEEeecCCcccCCccccCc
Confidence 99996565 577876666665542 5677889999999999999999999 566 566665544344555555 5
Q ss_pred EEEEEEEcCCCcEEeEEEEEecccc----CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGAL----RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~----~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
.+.+.+++.||.+|+++++.|++.+ ++++.|+||++||+++....+.|... .+.|+++||+|+++|+||++++|.
T Consensus 391 ~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~-~~~l~~~G~~v~~~d~rG~~~~G~ 469 (662)
T 3azo_A 391 PQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLD-VAYFTSRGIGVADVNYGGSTGYGR 469 (662)
T ss_dssp CEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHH-HHHHHTTTCEEEEEECTTCSSSCH
T ss_pred ceEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHH-HHHHHhCCCEEEEECCCCCCCccH
Confidence 7889999989999999999998754 45789999999999887776677754 456677899999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc-cc-
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK-FT- 612 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-~~- 612 (734)
.|.......++...++|+.+++++|++++.+|++||+|+|+|+||+++++++.+ |++|+++|+.+|+.|+..+.. ..
T Consensus 470 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ 548 (662)
T 3azo_A 470 AYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTH 548 (662)
T ss_dssp HHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSC
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhccccc
Confidence 999876666677789999999999999999999999999999999999999886 999999999999998875433 11
Q ss_pred -cCccccc-ccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCc
Q psy4818 613 -IAYYSES-EFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690 (734)
Q Consensus 613 -~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~ 690 (734)
....+.. .+|.+. +..+.+..++|+.++.. +++| +||+||++|.+||+.++.+++++|++. |++
T Consensus 549 ~~~~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~----~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~ 614 (662)
T 3azo_A 549 DFESRYLDFLIGSFE--EFPERYRDRAPLTRADR----VRVP-FLLLQGLEDPVCPPEQCDRFLEAVAGC-------GVP 614 (662)
T ss_dssp GGGTTHHHHHTCCTT--TCHHHHHHTCGGGGGGG----CCSC-EEEEEETTCSSSCTHHHHHHHHHHTTS-------CCC
T ss_pred chhhHhHHHHhCCCc--cchhHHHhhChHhHhcc----CCCC-EEEEeeCCCCCCCHHHHHHHHHHHHHc-------CCC
Confidence 1111111 234432 33456778899998876 7777 999999999999999999999999988 899
Q ss_pred EEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCC
Q psy4818 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYY 730 (734)
Q Consensus 691 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 730 (734)
+++++++++||++..... ..+....+++||.++|+....
T Consensus 615 ~~~~~~~~~gH~~~~~~~-~~~~~~~~~~fl~~~l~~~~~ 653 (662)
T 3azo_A 615 HAYLSFEGEGHGFRRKET-MVRALEAELSLYAQVFGVEVA 653 (662)
T ss_dssp EEEEEETTCCSSCCSHHH-HHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEEECCCCCCCCChHH-HHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999876544 468888999999999987643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=505.30 Aligned_cols=589 Identities=12% Similarity=0.074 Sum_probs=420.5
Q ss_pred CcEEeCCeEEEEEEcCC----CCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEE
Q psy4818 95 APQRQENNYFYFHNKGL----QNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTL 170 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l 170 (734)
.++|||.+++|..+... .....+|+.+..++..+.|.... ..+..++|||||++|||+.+ .+|
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~-------~~~~~~~~SPdG~~la~~~~------~~i 134 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP-------NNTQWVTWSPVGHKLAYVWN------NDI 134 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-------TTEEEEEECSSTTCEEEEET------TEE
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCC-------CcceeeEECCCCCEEEEEEC------CeE
Confidence 34789999999887431 11256777777666544332211 12678999999999999964 369
Q ss_pred EEEECCCCCccccccccc-------------------ccCeeEEEcCCcEEEEEEEecCCCCC-------CC---Cc---
Q psy4818 171 HIKDVDTGKDYPEVLKNV-------------------KFPSISWTHDHKGFFYNQYCDINGTA-------DG---TE--- 218 (734)
Q Consensus 171 ~v~dl~~g~~~~~~~~~~-------------------~~~~~~wSpDg~~l~y~~~~~~~~~~-------~~---~~--- 218 (734)
|++|+.+|+..+.+..+. ...++.|||||+.|+|.+.++..... .. ..
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence 999999988654433221 11248899999999999876532110 00 00
Q ss_pred -----c--cccCCcEEEEEECCC---CCCCCeeEEecC----CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 219 -----T--TAHMGQKIYYHVLGT---EQDKDIPVVEFP----NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 219 -----~--~~~~~~~l~~~~l~t---~~~~~~~v~~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
. ..+...+|+++++.+ +..........+ .+..++..++|||||+.+++...+......|+++|+++
T Consensus 215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 0 011123789999987 532111112211 14557788999999998888877765557899999988
Q ss_pred CCCC--cccCCCCceeeecc-cc-------ceEEEEEecCCeEE-EEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc
Q psy4818 285 LPDG--KISGKFPLKTVIPG-MD-------HHHEIIANNGPELI-VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 285 ~~~~--~l~~~~~~~~l~~~-~~-------~~~~~~s~dg~~l~-~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 353 (734)
|... +. ....++.. .. .....|+|||+.|+ +.+++++ ...||+++++++. .+.|+.+. ..
T Consensus 295 g~~~~~~~----~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G-~~~l~~~~~~~~~---~~~lT~g~-~~ 365 (740)
T 4a5s_A 295 SSGRWNCL----VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG-YRHICYFQIDKKD---CTFITKGT-WE 365 (740)
T ss_dssp TTTEEEEC----GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS-CEEEEEEETTCSS---CEESCCSS-SC
T ss_pred Ccccccee----EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC-ceEEEEEECCCCc---eEecccCC-EE
Confidence 5300 00 01111100 00 11234999999988 7777655 5579999998876 46666553 45
Q ss_pred eeEEEEEeeCCEEEEEEEe----CCceeEEEEECCCCceeeeeCCC----CceEEeeccCcccceEEEEEecCCCCceEE
Q psy4818 354 TLDVVAAVANNKLIVHYIQ----NVRSVMDLHDLNTGKRLHSFPLD----LGQITHISGRRKYNEVFYGFTSFLQPGTIY 425 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~----~~~~~l~~~dl~~g~~~~~l~~~----~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~ 425 (734)
+..... .+++.|+|.... .+..+||.+++.+++..+.|+.. .+.+..++++++++.+++.++++. |+.++
T Consensus 366 v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~ 443 (740)
T 4a5s_A 366 VIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYT 443 (740)
T ss_dssp EEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEE
T ss_pred EEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEE
Confidence 544333 446889998876 34568999999544433366632 245667889999999999999987 88999
Q ss_pred EEeCCCCcCCCCCCceeEEeecc-C-CCCCCCCc-eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC
Q psy4818 426 HCNIPENITDQDDFKPTIFRETI-V-PEFEPTLF-QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV 502 (734)
Q Consensus 426 ~~d~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~ 502 (734)
++++ .+++ ...++.... + +.+....+ ..+.+.+ +.||.+|+++++.|+++++.+++|+||++|||++...
T Consensus 444 l~~~-----~~~~-~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~ 516 (740)
T 4a5s_A 444 LHSS-----VNDK-GLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQK 516 (740)
T ss_dssp EEET-----TTTE-EEEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCC
T ss_pred EEEC-----CCCc-EEEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEeCCCCCCCCCccEEEEECCCCcccc
Confidence 9998 4442 223333211 1 11233334 4566777 7799999999999999877789999999999987753
Q ss_pred -CccccHHHHHHHH-hcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHH
Q psy4818 503 -LPTFSISRCMFLR-HFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGL 580 (734)
Q Consensus 503 -~~~~~~~~~~~l~-~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~ 580 (734)
...|...+...|+ ++||+|+++|+||+|++|..|.......++...++|+.+++++|++++++|++||+|+|+|+||+
T Consensus 517 ~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~ 596 (740)
T 4a5s_A 517 ADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGY 596 (740)
T ss_dssp CCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHH
T ss_pred cccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHH
Confidence 3344433444444 57999999999999999999999888778888899999999999988899999999999999999
Q ss_pred HHHHHHhcCCCceeEEEEcCCcchhccccccccCccccccc-CCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEec
Q psy4818 581 LVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTG 659 (734)
Q Consensus 581 ~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g 659 (734)
++++++.++|++|+++|+.+|+.|+..+.. .+...| |.|...+..+.+...+|+.++.. ++.||+||+||
T Consensus 597 ~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----i~~~P~Lii~G 667 (740)
T 4a5s_A 597 VTSMVLGSGSGVFKCGIAVAPVSRWEYYDS-----VYTERYMGLPTPEDNLDHYRNSTVMSRAEN----FKQVEYLLIHG 667 (740)
T ss_dssp HHHHHHTTTCSCCSEEEEESCCCCGGGSBH-----HHHHHHHCCSSTTTTHHHHHHSCSGGGGGG----GGGSEEEEEEE
T ss_pred HHHHHHHhCCCceeEEEEcCCccchHHhhh-----HHHHHHcCCCCccccHHHHHhCCHHHHHhc----CCCCcEEEEEc
Confidence 999999999999999999999999875432 122333 66533344556778899988876 77755999999
Q ss_pred CCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCCC
Q psy4818 660 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731 (734)
Q Consensus 660 ~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 731 (734)
++|.+||+.++.+++++|+++ +++++++++|+++|++..... ..+.+..+.+||.++|+....|
T Consensus 668 ~~D~~v~~~~~~~l~~~l~~~-------g~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~~~~~ 731 (740)
T 4a5s_A 668 TADDNVHFQQSAQISKALVDV-------GVDFQAMWYTDEDHGIASSTA-HQHIYTHMSHFIKQCFSLPAAA 731 (740)
T ss_dssp TTCSSSCTHHHHHHHHHHHHT-------TCCCEEEEETTCCTTCCSHHH-HHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCccCHHHHHHHHHHHHHC-------CCCeEEEEECCCCCcCCCCcc-HHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999998 899999999999999865444 3678888999999999876544
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-50 Score=468.12 Aligned_cols=585 Identities=12% Similarity=0.078 Sum_probs=404.9
Q ss_pred cCCcEEeCCeEEEEEEcCC----CCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceE
Q psy4818 93 YSAPQRQENNYFYFHNKGL----QNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 168 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~ 168 (734)
...++|||.+++|.....+ .....||+.+..++.. +....+. ..+..++|||||++|||+.+ .
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~---~~~~~l~----~~~~~~~~SPDG~~la~~~~------~ 130 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF---VRGNELP----RPIQYLCWSPVGSKLAYVYQ------N 130 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE---CCSSCCC----SSBCCEEECSSTTCEEEEET------T
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc---ccceecC----cccccceECCCCCEEEEEEC------C
Confidence 4456689999999876431 1124678777655543 1111111 12567999999999999863 2
Q ss_pred EEEEEECCCCCccccccccc-------------------ccCeeEEEcCCcEEEEEEEecCCCC--------CCCCc---
Q psy4818 169 TLHIKDVDTGKDYPEVLKNV-------------------KFPSISWTHDHKGFFYNQYCDINGT--------ADGTE--- 218 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~-------------------~~~~~~wSpDg~~l~y~~~~~~~~~--------~~~~~--- 218 (734)
+|+++|+.+|+..+.+..+. ....++|||||+.|+|.+.++.... .+...
T Consensus 131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 210 (719)
T 1z68_A 131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI 210 (719)
T ss_dssp EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence 79999999988654332211 1147999999999999987642100 00000
Q ss_pred -------ccccCCcEEEEEECCCCCCC-CeeEEe---cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEe----CC
Q psy4818 219 -------TTAHMGQKIYYHVLGTEQDK-DIPVVE---FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFD----LH 283 (734)
Q Consensus 219 -------~~~~~~~~l~~~~l~t~~~~-~~~v~~---~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d----~~ 283 (734)
-..+...+|+++++.++... .+.+.. ...+......++|||||+.++....+.....+|+++| +.
T Consensus 211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp EEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred eecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 00112237888888775421 001100 0123446778999999876554444433346899999 77
Q ss_pred CCCCCcccCCCCceeeecccc--ce-----EEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeE
Q psy4818 284 SLPDGKISGKFPLKTVIPGMD--HH-----HEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLD 356 (734)
Q Consensus 284 ~~~~~~l~~~~~~~~l~~~~~--~~-----~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 356 (734)
++....+.. ....... .. ...|+|||+.|++.+.......+|++++++++. .+.++.+. ..+..
T Consensus 291 ~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~-~~v~~ 361 (719)
T 1z68_A 291 TWDCPKTQE-----HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGK-WEAIN 361 (719)
T ss_dssp SEECCGGGE-----EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSS-SCEEE
T ss_pred CCceEEEEe-----cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCc-eEEEE
Confidence 643222210 0001111 11 234999999998865443446789999998765 45555443 44434
Q ss_pred EEEEeeCCEEEEEEEe----CCceeEEEEECCCCc-eeeeeCC----CCceEEeeccCcccceEEEEEecCCCCceEEEE
Q psy4818 357 VVAAVANNKLIVHYIQ----NVRSVMDLHDLNTGK-RLHSFPL----DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 357 ~~~~~~~~~l~~~~~~----~~~~~l~~~dl~~g~-~~~~l~~----~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
...+ +++.+++.... .+..+|+.+++.+|. ..+.++. ..+.+..++++++++.+++.+++++.| .++++
T Consensus 362 ~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~ 439 (719)
T 1z68_A 362 IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLH 439 (719)
T ss_dssp EEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEE
T ss_pred EEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEE
Confidence 3445 66788888866 455688888885553 2345542 223455677889999999999999888 58899
Q ss_pred eCCCCcCCCCCCceeEEeecc-C-CCCCCCCc-eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-C
Q psy4818 428 NIPENITDQDDFKPTIFRETI-V-PEFEPTLF-QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-L 503 (734)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~ 503 (734)
|+ ++++ ...++.... + ..++...+ .++.+++++.| .+|+++++.|+++++.++.|+||++||+++... .
T Consensus 440 d~-----~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~ 512 (719)
T 1z68_A 440 DG-----RTDQ-EIKILEENKELENALKNIQLPKEEIKKLEVDE-ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVR 512 (719)
T ss_dssp CS-----SSCC-EEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCC
T ss_pred EC-----CCCC-EEEEeecchhhhhhhccccCCceEEEEEecCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCccc
Confidence 98 5662 133343311 1 12344445 67889999888 899999999998766778999999999987653 3
Q ss_pred ccccHHHHH-HHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHH
Q psy4818 504 PTFSISRCM-FLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLV 582 (734)
Q Consensus 504 ~~~~~~~~~-~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~ 582 (734)
..|...+.. +++++||+|+++|+||+|++|..|.......++...++|+.+++++|++++.+|++|++|+|+|+||+++
T Consensus 513 ~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a 592 (719)
T 1z68_A 513 SVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVS 592 (719)
T ss_dssp CCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHH
T ss_pred ccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHH
Confidence 344433334 4446799999999999999999998877766777789999999999999888999999999999999999
Q ss_pred HHHHhcCCCceeEEEEcCCcchhccccccccCcccccc-cCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCC
Q psy4818 583 GACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE-FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH 661 (734)
Q Consensus 583 ~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~ 661 (734)
+.++.++|++|+++|+.+|+.++..+.. .+... +|.|...+....+...+|+.++.. ++.||+||+||++
T Consensus 593 ~~~a~~~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~P~li~~G~~ 663 (719)
T 1z68_A 593 SLALASGTGLFKCGIAVAPVSSWEYYAS-----VYTERFMGLPTKDDNLEHYKNSTVMARAEY----FRNVDYLLIHGTA 663 (719)
T ss_dssp HHHHTTSSSCCSEEEEESCCCCTTTSBH-----HHHHHHHCCSSTTTTHHHHHHTCSGGGGGG----GTTSEEEEEEETT
T ss_pred HHHHHhCCCceEEEEEcCCccChHHhcc-----ccchhhcCCcccccchhhhhhCCHhHHHhc----CCCCcEEEEEeCC
Confidence 9999999999999999999998765421 12122 365543333455677888888876 7785699999999
Q ss_pred CCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 662 DDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 662 D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
|.+||+.++.+++++|++. ++++++++++++||++. ... ..+....+.+||.++|+
T Consensus 664 D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~~~~gH~~~-~~~-~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 664 DDNVHFQNSAQIAKALVNA-------QVDFQAMWYSDQNHGLS-GLS-TNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp CSSSCTHHHHHHHHHHHHT-------TCCCEEEEETTCCTTCC-THH-HHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHC-------CCceEEEEECcCCCCCC-ccc-HHHHHHHHHHHHHHhhC
Confidence 9999999999999999998 88999999999999993 332 36778889999999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=457.40 Aligned_cols=553 Identities=15% Similarity=0.121 Sum_probs=400.8
Q ss_pred HHHHHHHHHhccCCc-cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEE
Q psy4818 78 EAIKEQLLRMANYEK-YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHF 156 (734)
Q Consensus 78 ~~l~~~~~~~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~l 156 (734)
.++.+.+..+....- ....++||.+++|.....+ ...||..+ ++..+.++... ...+..+.|||| ++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g--~~~lw~~~--~g~~~~lt~~~------~~~~~~~~~spd--~~ 77 (582)
T 3o4h_A 10 SRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEG--SVNAYLYD--GGETVKLNREP------INSVLDPHYGVG--RV 77 (582)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETT--EEEEEEEE--TTEEEECCSSC------CSEECEECTTCS--EE
T ss_pred HHHHHHHHHHhccchheeecCCCCCeEEEEEccCC--ceeEEEEc--CCCcEeeeccc------ccccccccCCCC--eE
Confidence 334445555444332 2334699999999987543 36688863 45555554422 135778999999 68
Q ss_pred EEEEeC-CCCceEEEEEEEC--CCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECC
Q psy4818 157 AYCLSK-SGSDWNTLHIKDV--DTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLG 233 (734)
Q Consensus 157 a~~~~~-~g~~~~~l~v~dl--~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 233 (734)
+|+.+. +|.+...||++++ .++.. ..+.... ....+|||||+.++|++.... .+.++++.
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~-~~~~~~s~dg~~~~~~s~~~~---------------~~~l~d~~ 140 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKP-MRILSGVDTGEAVVFTGATED---------------RVALYALD 140 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCS-BEEEEEEECSSCEEEEEECSS---------------CEEEEEEE
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc-cccCCCC-ceeeeeCCCCCeEEEEecCCC---------------CceEEEcc
Confidence 888875 5666788999998 55543 2222211 236799999999999875321 23356777
Q ss_pred CCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEe
Q psy4818 234 TEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIAN 312 (734)
Q Consensus 234 t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~ 312 (734)
++.. ..+...+. .++.|||||++|++...+......||++|++++. .+.++........ .|||
T Consensus 141 ~g~~--~~l~~~~~-----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---------~~~l~~~~~~~~~~~~Sp 204 (582)
T 3o4h_A 141 GGGL--RELARLPG-----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---------LRVFDSGEGSFSSASISP 204 (582)
T ss_dssp TTEE--EEEEEESS-----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---------CEEECCSSCEEEEEEECT
T ss_pred CCcE--EEeecCCC-----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---------ceEeecCCCccccceECC
Confidence 6532 23333322 4689999999999887654444679999998842 3444443333333 3999
Q ss_pred cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeE-------EEEEeeCCEEEEEEEeCCceeEEEEECCC
Q psy4818 313 NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLD-------VVAAVANNKLIVHYIQNVRSVMDLHDLNT 385 (734)
Q Consensus 313 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~l~~~dl~~ 385 (734)
||+.|+ .++.++ ..+|+++|++++. .+ ++......+.. ...+..++.++++...++ .+.+|++
T Consensus 205 DG~~l~-~~~~~~-~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g--~~~l~~~-- 274 (582)
T 3o4h_A 205 GMKVTA-GLETAR-EARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG--RSAVFID-- 274 (582)
T ss_dssp TSCEEE-EEECSS-CEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT--EEEEEET--
T ss_pred CCCEEE-EccCCC-eeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC--cEEEEEE--
Confidence 999988 444433 4579999998876 34 44443222211 111444458888888886 4556666
Q ss_pred CceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCC---CCc-eEEE
Q psy4818 386 GKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEP---TLF-QTKQ 461 (734)
Q Consensus 386 g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~ 461 (734)
|+.++ .+.+.+.+++++ ++ .++++.++..+|+++|.+|+ .+ +.+.+ .+++ ..+ ..+.
T Consensus 275 g~~~~---~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~-----~~---~~~~l------~~~~~~~~~~~~~~~ 335 (582)
T 3o4h_A 275 GERVE---APQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPS-----GE---PLLEG------GLPEDLRRSIAGSRL 335 (582)
T ss_dssp TEEEC---CCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETT-----CC---EEECC------CCCHHHHHTEEEEEE
T ss_pred CCeec---cCCCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcC-----CC---ceEEE------ecCCccccccCcceE
Confidence 76543 234567677777 55 56688899999999999998 22 22222 2232 233 7889
Q ss_pred EEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc
Q psy4818 462 VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 462 ~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
+.+++.+|.+|+++++.|++.. ++.|+||++||+++......|... .+.|+++||+|+++|+||++++|..|.....
T Consensus 336 ~~~~~~~g~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~~~~~~~~~~-~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~ 412 (582)
T 3o4h_A 336 VWVESFDGSRVPTYVLESGRAP--TPGPTVVLVHGGPFAEDSDSWDTF-AASLAAAGFHVVMPNYRGSTGYGEEWRLKII 412 (582)
T ss_dssp EEEECTTSCEEEEEEEEETTSC--SSEEEEEEECSSSSCCCCSSCCHH-HHHHHHTTCEEEEECCTTCSSSCHHHHHTTT
T ss_pred EEEECCCCCEEEEEEEcCCCCC--CCCcEEEEECCCcccccccccCHH-HHHHHhCCCEEEEeccCCCCCCchhHHhhhh
Confidence 9999999999999999998753 378999999999887666677654 4566678999999999999999999999877
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcc--ccc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYY--SES 619 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~--~~~ 619 (734)
..++...++|+.+++++|++++.+| |++|+|+|+||++++.++.++|++|+++|+.+|+.++..+........ |..
T Consensus 413 ~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 490 (582)
T 3o4h_A 413 GDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIE 490 (582)
T ss_dssp TCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHH
Confidence 7778888999999999999998888 999999999999999999999999999999999999876543221111 221
Q ss_pred c-cCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCC
Q psy4818 620 E-FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698 (734)
Q Consensus 620 ~-~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 698 (734)
. +| +..+.+..++|+.++.. ++.| +||+||++|.+||+.++.+++++|++. |++++++++++
T Consensus 491 ~~~~-----~~~~~~~~~sp~~~~~~----i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~-------g~~~~~~~~~~ 553 (582)
T 3o4h_A 491 QLTG-----GSREIMRSRSPINHVDR----IKEP-LALIHPQNASRTPLKPLLRLMGELLAR-------GKTFEAHIIPD 553 (582)
T ss_dssp HHTT-----TCHHHHHHTCGGGGGGG----CCSC-EEEEEETTCSSSCHHHHHHHHHHHHHT-------TCCEEEEEETT
T ss_pred HHcC-----cCHHHHHhcCHHHHHhc----CCCC-EEEEecCCCCCcCHHHHHHHHHHHHhC-------CCCEEEEEECC
Confidence 1 23 23455778899988876 7777 999999999999999999999999998 89999999999
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 699 AGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 699 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+||++..... ..+.+..+++||.++|+.
T Consensus 554 ~gH~~~~~~~-~~~~~~~i~~fl~~~l~~ 581 (582)
T 3o4h_A 554 AGHAINTMED-AVKILLPAVFFLATQRER 581 (582)
T ss_dssp CCSSCCBHHH-HHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCChHH-HHHHHHHHHHHHHHHcCC
Confidence 9999985444 468888999999999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-49 Score=458.52 Aligned_cols=566 Identities=14% Similarity=0.121 Sum_probs=403.0
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCC---CeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTG---STEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNT 169 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~ 169 (734)
...++|||.+++|... ..||+.+..++ ..+.+... ...+..++|||||++|||+.+ .+
T Consensus 113 ~~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~-------~~~~~~~~~SPDG~~la~~~~------~~ 173 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHG-------EGFATDAKLSPKGGFVSFIRG------RN 173 (741)
T ss_dssp CCEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCS-------SSCEEEEEECTTSSEEEEEET------TE
T ss_pred eeEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccC-------CcccccccCCCCCCEEEEEeC------Cc
Confidence 4455689999999874 34777766555 43333332 123778999999999999874 17
Q ss_pred EEEEECCCCCcccccccccc-----------------cCeeEEEcCCcEEEEEEEecCCCCC--------CC--------
Q psy4818 170 LHIKDVDTGKDYPEVLKNVK-----------------FPSISWTHDHKGFFYNQYCDINGTA--------DG-------- 216 (734)
Q Consensus 170 l~v~dl~~g~~~~~~~~~~~-----------------~~~~~wSpDg~~l~y~~~~~~~~~~--------~~-------- 216 (734)
|+++|+.+|+....+..... ...++|||||++|+|.+.+...... .+
T Consensus 174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 99999999876443322211 2579999999999999875421000 00
Q ss_pred -CcccccCCcEEEEEECCC-CCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCC-CCceEEEEeCCCCCCCcccCC
Q psy4818 217 -TETTAHMGQKIYYHVLGT-EQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT-QGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 217 -~~~~~~~~~~l~~~~l~t-~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~i~~~d~~~~~~~~l~~~ 293 (734)
..-..+....|+++++.+ +.. ..+............++| |||++|++...... ....|+++|+.++.
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------- 323 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQT--QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------- 323 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCC--EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-------
T ss_pred CCCCCCCCeeEEEEEECCCCCce--EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-------
Confidence 000011223788888877 542 222211123456778999 99999998876333 34799999998842
Q ss_pred CCceeeeccccc------eEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEE-EEeeCCEE
Q psy4818 294 FPLKTVIPGMDH------HHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV-AAVANNKL 366 (734)
Q Consensus 294 ~~~~~l~~~~~~------~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l 366 (734)
...+...... ....|+|||+ +++.++.++ ..+|+.++++++ .+.++.+. ..+.... ...+++.+
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g-~~~l~~~~~~~~----~~~l~~~~-~~v~~~~~~s~dg~~l 394 (741)
T 2ecf_A 324 --QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG-FQHLYRIDSKGK----AAALTHGN-WSVDELLAVDEKAGLA 394 (741)
T ss_dssp --EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS-SCEEEEECSSSC----EEESCCSS-SCEEEEEEEETTTTEE
T ss_pred --eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC-ccEEEEEcCCCC----eeeeeecc-eEEEeEeEEeCCCCEE
Confidence 2222222111 1124999998 777776654 457999997643 35555443 3333332 33455678
Q ss_pred EEEEEeCC--ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEE
Q psy4818 367 IVHYIQNV--RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIF 444 (734)
Q Consensus 367 ~~~~~~~~--~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~ 444 (734)
++....++ ..+|+.+++ +|+..+.|+.. ..+..+++++|++.+++.+++..+|+.+|+++. ..+ ..+.+
T Consensus 395 ~~~~~~~~~~~~~l~~~~~-~g~~~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~-----~~~--~~~~l 465 (741)
T 2ecf_A 395 YFRAGIESARESQIYAVPL-QGGQPQRLSKA-PGMHSASFARNASVYVDSWSNNSTPPQIELFRA-----NGE--KIATL 465 (741)
T ss_dssp EEEECSSCTTCBEEEEEET-TCCCCEECCCS-CSEEEEEECTTSSEEEEEEEETTEEEEEEEEET-----TSC--EEECS
T ss_pred EEEEeCCCCceEEEEEEEc-CCCCeeecccC-CCceEEEECCCCCEEEEEecCCCCCCeEEEEEc-----CCC--eEEEe
Confidence 88877666 345676666 46555677653 345578899999999999999999999999998 333 33333
Q ss_pred eeccC--C--CCCCC--Cc-eEEEEEEEcCCC-cEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccH----HHH
Q psy4818 445 RETIV--P--EFEPT--LF-QTKQVYFRSKDG-TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSI----SRC 511 (734)
Q Consensus 445 ~~~~~--~--~~~~~--~~-~~~~~~~~s~dg-~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~----~~~ 511 (734)
..... . .+... .+ ..+.+.+++.|| .+|+++++.|+++.+.++.|+||++||+++... ...|.. .+.
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~ 545 (741)
T 2ecf_A 466 VENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFN 545 (741)
T ss_dssp SCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHH
T ss_pred ccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccchhHHH
Confidence 32111 0 12222 44 689999999999 999999999988655677899999999987652 223431 245
Q ss_pred HHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC
Q psy4818 512 MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE 591 (734)
Q Consensus 512 ~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~ 591 (734)
+.|+++||+|+++|+||+|++|..|.......++...++|+.+++++|.+++.+|++|++|+|+|+||++++.++.++|+
T Consensus 546 ~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~ 625 (741)
T 2ecf_A 546 QYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASD 625 (741)
T ss_dssp HHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTT
T ss_pred HHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCC
Confidence 67777899999999999999998888776666667779999999999999888999999999999999999999999999
Q ss_pred ceeEEEEcCCcchhccccccccCccccccc-CCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHH
Q psy4818 592 LYGAALILVGALDMLRFNKFTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670 (734)
Q Consensus 592 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~ 670 (734)
+|+++|+.+|+.++..+.. .+...+ +.|.. ..+.+...+|+.++.. ++.| +||+||++|.+|++.++
T Consensus 626 ~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----i~~P-~lii~G~~D~~v~~~~~ 693 (741)
T 2ecf_A 626 SYACGVAGAPVTDWGLYDS-----HYTERYMDLPAR--NDAGYREARVLTHIEG----LRSP-LLLIHGMADDNVLFTNS 693 (741)
T ss_dssp TCSEEEEESCCCCGGGSBH-----HHHHHHHCCTGG--GHHHHHHHCSGGGGGG----CCSC-EEEEEETTCSSSCTHHH
T ss_pred ceEEEEEcCCCcchhhhcc-----ccchhhcCCccc--ChhhhhhcCHHHHHhh----CCCC-EEEEccCCCCCCCHHHH
Confidence 9999999999998754321 121222 44432 2344567789887775 7777 99999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 671 YKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 671 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
.+++++|+.. ++++++++++++||++..... .+....+.+||.++|+
T Consensus 694 ~~~~~~l~~~-------~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 694 TSLMSALQKR-------GQPFELMTYPGAKHGLSGADA--LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp HHHHHHHHHT-------TCCCEEEEETTCCSSCCHHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHC-------CCceEEEEECCCCCCCCCCch--hHHHHHHHHHHHHhcC
Confidence 9999999998 889999999999999875433 5777889999999985
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=452.40 Aligned_cols=562 Identities=13% Similarity=0.133 Sum_probs=396.6
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV 175 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl 175 (734)
++++ ++++|..+ ..+++.+..++....++.... .+..++|||||++|||+.+ .+|+++|+
T Consensus 89 ~spd-~~~~~~~~------~~i~~~d~~~~~~~~l~~~~~-------~~~~~~~SpdG~~la~~~~------~~i~v~~~ 148 (706)
T 2z3z_A 89 DAGR-GLVVLFTQ------GGLVGFDMLARKVTYLFDTNE-------ETASLDFSPVGDRVAYVRN------HNLYIARG 148 (706)
T ss_dssp ETTT-TEEEEEET------TEEEEEETTTTEEEEEECCTT-------CCTTCEECTTSSEEEEEET------TEEEEEEC
T ss_pred ECCC-CeEEEEEC------CEEEEEECCCCceEEccCCcc-------cccCCcCCCCCCEEEEEEC------CeEEEEec
Confidence 3466 77777642 347777766666555554321 2567899999999999643 37999999
Q ss_pred CC-----CCcccccccccc---------------cCeeEEEcCCcEEEEEEEecCCCCC--------CCCc---------
Q psy4818 176 DT-----GKDYPEVLKNVK---------------FPSISWTHDHKGFFYNQYCDINGTA--------DGTE--------- 218 (734)
Q Consensus 176 ~~-----g~~~~~~~~~~~---------------~~~~~wSpDg~~l~y~~~~~~~~~~--------~~~~--------- 218 (734)
.+ |+....+..... ...+.|||||+.|+|.+.++..... ....
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~ 228 (706)
T 2z3z_A 149 GKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA 228 (706)
T ss_dssp BCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred CcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence 98 876543322221 2689999999999999865321100 0000
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC-CceEEEEeCCCCCCCcccCCCCce
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ-GSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
-......+|+++++.++... .+............+.|||||++|++....... ...|+++|+.++. ...
T Consensus 229 g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--------~~~ 298 (706)
T 2z3z_A 229 GTPSHHVTVGIYHLATGKTV--YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--------FVR 298 (706)
T ss_dssp TSCCCEEEEEEEETTTTEEE--ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--------EEE
T ss_pred CCCCCeeEEEEEECCCCceE--eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--------eee
Confidence 00112357999999876421 222111223466789999999999987654322 2689999998831 122
Q ss_pred eeeccccce-----E-EEEEe--cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEE
Q psy4818 298 TVIPGMDHH-----H-EIIAN--NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIV 368 (734)
Q Consensus 298 ~l~~~~~~~-----~-~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~ 368 (734)
.+....... . ..|+| ||+ +++.+++++ ..+|+.++.+++. ++.+..+. ..+...+.+. +++.+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g-~~~l~~~~~~~~~---~~~l~~~~-~~v~~~~~~spdg~~l~~ 372 (706)
T 2z3z_A 299 TLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDG-WNHLYLYDTTGRL---IRQVTKGE-WEVTNFAGFDPKGTRLYF 372 (706)
T ss_dssp EEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTS-SCEEEEEETTSCE---EEECCCSS-SCEEEEEEECTTSSEEEE
T ss_pred EEEEccCCCeECccCCceeecCCCCE-EEEEEccCC-ccEEEEEECCCCE---EEecCCCC-eEEEeeeEEcCCCCEEEE
Confidence 222111111 1 24999 887 555666554 4679999976543 34454433 3333323443 4457777
Q ss_pred EEEeCC--ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEee
Q psy4818 369 HYIQNV--RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRE 446 (734)
Q Consensus 369 ~~~~~~--~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~ 446 (734)
....++ ...|+.+|+.+|+ .+.++.. +.+..+++++|++.+++.+++..+|+.++++|+ .++ +.+++..
T Consensus 373 ~~~~~~~~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~-----~~~--~~~~~~~ 443 (706)
T 2z3z_A 373 ESTEASPLERHFYCIDIKGGK-TKDLTPE-SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI-----GKG--SHTLLEA 443 (706)
T ss_dssp EESSSCTTCBEEEEEETTCCC-CEESCCS-SSEEEEEECTTSSEEEEEEECSSCSCEEEEEES-----SSC--EEEEEEC
T ss_pred EecCCCCceEEEEEEEcCCCC-ceeccCC-CceEEEEECCCCCEEEEEecCCCCCcEEEEEEC-----CCC--eEeeccc
Confidence 776654 3589999997766 4566533 345678899999999999999999999999999 455 3333433
Q ss_pred ccCCCCCCCCc-eEEEEEEEcCCC-cEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHH---HHHHHHhcCeE
Q psy4818 447 TIVPEFEPTLF-QTKQVYFRSKDG-TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSIS---RCMFLRHFNGI 520 (734)
Q Consensus 447 ~~~~~~~~~~~-~~~~~~~~s~dg-~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~---~~~~l~~~G~~ 520 (734)
. . .+....+ ..+.+.+++.|| .+++++++.|+++++++++|+||++|||++.... ..|... +.+.|+++||+
T Consensus 444 ~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~ 521 (706)
T 2z3z_A 444 K-N-PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYA 521 (706)
T ss_dssp C--------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCE
T ss_pred c-c-hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcE
Confidence 2 1 1333333 578899999999 8999999999987666788999999999877642 345543 56777778999
Q ss_pred EEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 521 YAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 521 v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
|+++|+||+|++|..|.......++...++|+.+++++|.+++.+|++|++|+|+|+||++++.++.++|++|+++|+.+
T Consensus 522 v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 601 (706)
T 2z3z_A 522 VFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGG 601 (706)
T ss_dssp EEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred EEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcC
Confidence 99999999999999888776666667788999999999998888999999999999999999999999999999999999
Q ss_pred CcchhccccccccCccccccc-CCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q psy4818 601 GALDMLRFNKFTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679 (734)
Q Consensus 601 ~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~ 679 (734)
|+.++..+.. .+...+ +.|... .+.+...+|...+.. ++.| +||+||++|.+||+.++.+++++|++
T Consensus 602 ~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~ 669 (706)
T 2z3z_A 602 PVIDWNRYAI-----MYGERYFDAPQEN--PEGYDAANLLKRAGD----LKGR-LMLIHGAIDPVVVWQHSLLFLDACVK 669 (706)
T ss_dssp CCCCGGGSBH-----HHHHHHHCCTTTC--HHHHHHHCGGGGGGG----CCSE-EEEEEETTCSSSCTHHHHHHHHHHHH
T ss_pred CccchHHHHh-----hhhhhhcCCcccC--hhhhhhCCHhHhHHh----CCCC-EEEEeeCCCCCCCHHHHHHHHHHHHH
Confidence 9998764322 122222 555421 234556788877775 6766 99999999999999999999999999
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
. +++++++++|++||++... ...+.+..+.+||.++|
T Consensus 670 ~-------~~~~~~~~~~~~gH~~~~~--~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 670 A-------RTYPDYYVYPSHEHNVMGP--DRVHLYETITRYFTDHL 706 (706)
T ss_dssp H-------TCCCEEEEETTCCSSCCTT--HHHHHHHHHHHHHHHHC
T ss_pred C-------CCCeEEEEeCCCCCCCCcc--cHHHHHHHHHHHHHHhC
Confidence 8 8899999999999998765 23677888999999876
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=460.91 Aligned_cols=582 Identities=12% Similarity=0.093 Sum_probs=396.0
Q ss_pred CCcEEeCCeEEEEEEcCCCC----eeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEE
Q psy4818 94 SAPQRQENNYFYFHNKGLQN----HSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNT 169 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~ 169 (734)
...+|||.+++|...+.... ...+|+.+..++..+.|.... .+...+..++|||||++|||..+ .+
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~~~~SPdG~~la~~~~------~~ 135 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE----VSNAKLQYAGWGPKGQQLIFIFE------NN 135 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT----CCSCCCSBCCBCSSTTCEEEEET------TE
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc----cccccccccEECCCCCEEEEEEC------Ce
Confidence 34568999999987643221 256777776666554443321 11122567999999999999885 27
Q ss_pred EEEEECCCCCccccccccc-------------------ccCeeEEEcCCcEEEEEEEecCCCC--------C--------
Q psy4818 170 LHIKDVDTGKDYPEVLKNV-------------------KFPSISWTHDHKGFFYNQYCDINGT--------A-------- 214 (734)
Q Consensus 170 l~v~dl~~g~~~~~~~~~~-------------------~~~~~~wSpDg~~l~y~~~~~~~~~--------~-------- 214 (734)
|+++|+++|+.+..+.... ....++|||||+.|+|.+.+..... .
T Consensus 136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (723)
T 1xfd_A 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP 215 (723)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence 9999999988654332211 1146999999999999987642110 0
Q ss_pred -----CCCcccccCCcEEEEEECCCCCCCCeeEEecCC----CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 215 -----DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPN----GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 215 -----~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
+|. ......|+++++.++... ..+..+. ....+..++|||||++|++...+......|+++|++++
T Consensus 216 ~~~~~~G~---~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 216 YHYPKAGS---ENPSISLHVIGLNGPTHD--LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp EECCBTTS---CCCEEEEEEEESSSSCCC--EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred ccCCCCCC---CCCeeEEEEEECCCCcee--EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence 000 011237999999876531 1112111 13466789999999998877666444578999999884
Q ss_pred CCCcccCCCCceeeecccc-c------eEEEEEecCCeEEEE-eCCCC---CCceEEEEe-cCCCCCCCceEeecCCCCc
Q psy4818 286 PDGKISGKFPLKTVIPGMD-H------HHEIIANNGPELIVK-TTKNA---PKGKVVTIN-LNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 286 ~~~~l~~~~~~~~l~~~~~-~------~~~~~s~dg~~l~~~-s~~~~---~~~~l~~~d-~~~~~~~~~~~l~~~~~~~ 353 (734)
. ...+..... . ....|+|||+.|++. ++.++ ...+|+.+| ..++.....+.++.+. ..
T Consensus 291 ~---------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~ 360 (723)
T 1xfd_A 291 V---------CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WD 360 (723)
T ss_dssp C---------EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SC
T ss_pred c---------ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC-eE
Confidence 2 122221110 0 122499999999997 54443 145799999 4444310123444332 33
Q ss_pred eeEEEEE-eeCCEEEEEEEeC--CceeEEEEECCCCceeeeeCC---CCceEEeeccCcccceEEEEEecCCCCceEEEE
Q psy4818 354 TLDVVAA-VANNKLIVHYIQN--VRSVMDLHDLNTGKRLHSFPL---DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 354 ~~~~~~~-~~~~~l~~~~~~~--~~~~l~~~dl~~g~~~~~l~~---~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
+.....+ .+++.|++....+ +..+|+.+++..+...+.|+. +.+.+..+++++|++.+++.++++..|..++ +
T Consensus 361 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~-~ 439 (723)
T 1xfd_A 361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV-H 439 (723)
T ss_dssp EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE-E
T ss_pred EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEE-E
Confidence 3333333 4556777777665 445777777643333455553 2344567888999999999999999998665 4
Q ss_pred eCCCCcCCCCCCceeEEeecc-C-CCCCCCCc-eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-C
Q psy4818 428 NIPENITDQDDFKPTIFRETI-V-PEFEPTLF-QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-L 503 (734)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~ 503 (734)
+. .+++ +..++.... + ..+....+ ..+.+.+++.|| +|+++++.|+++++.++.|+||++||+++... .
T Consensus 440 ~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~ 512 (723)
T 1xfd_A 440 NT-----TDKK-KMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVA 512 (723)
T ss_dssp ET-----TTCC-EEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCC
T ss_pred EC-----CCCC-EEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccC
Confidence 65 3442 333333211 1 01222233 567888889999 99999999998766788999999999987642 3
Q ss_pred ccccH-HHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHH
Q psy4818 504 PTFSI-SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLV 582 (734)
Q Consensus 504 ~~~~~-~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~ 582 (734)
..|.. ....+|+++||+|+++|+||+|++|..|.......++...++|+.+++++|.+++.+|++||+|+|+|+||+++
T Consensus 513 ~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a 592 (723)
T 1xfd_A 513 EKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLS 592 (723)
T ss_dssp CCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHH
T ss_pred ccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHH
Confidence 33331 23456776799999999999999998888766656666789999999999998888899999999999999999
Q ss_pred HHHHhcC----CCceeEEEEcCCcchhccccccccCcccccc-cCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEE
Q psy4818 583 GACLNQR----PELYGAALILVGALDMLRFNKFTIAYYSESE-FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVL 657 (734)
Q Consensus 583 ~~~~~~~----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~ 657 (734)
+.++.++ |++|+++|+.+|+.++..+.. .+... +|.|.... ..+...+|...+.. ++.+|+||+
T Consensus 593 ~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~P~lii 661 (723)
T 1xfd_A 593 TYILPAKGENQGQTFTCGSALSPITDFKLYAS-----AFSERYLGLHGLDN--RAYEMTKVAHRVSA----LEEQQFLII 661 (723)
T ss_dssp HHCCCCSSSTTCCCCSEEEEESCCCCTTSSBH-----HHHHHHHCCCSSCC--SSTTTTCTHHHHTS----CCSCEEEEE
T ss_pred HHHHHhccccCCCeEEEEEEccCCcchHHhhh-----hccHhhcCCccCCh--hHHHhcChhhHHhh----cCCCCEEEE
Confidence 9999999 999999999999988764321 11111 24442111 12334555555554 663239999
Q ss_pred ecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 658 TGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 658 ~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
||++|.+||+.++.+++++|++. ++++++++++++||++..... ..+.+..+.+||.++|++
T Consensus 662 ~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~ 723 (723)
T 1xfd_A 662 HPTADEKIHFQHTAELITQLIRG-------KANYSLQIYPDESHYFTSSSL-KQHLYRSIINFFVECFRI 723 (723)
T ss_dssp EETTCSSSCHHHHHHHHHHHHHT-------TCCCEEEEETTCCSSCCCHHH-HHHHHHHHHHHHTTTTCC
T ss_pred EeCCCCCcCHhHHHHHHHHHHHC-------CCCeEEEEECCCCcccccCcc-hHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998 889999999999999854433 367788899999988863
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=233.36 Aligned_cols=276 Identities=16% Similarity=0.101 Sum_probs=197.3
Q ss_pred EEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccC-CCCCCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCc
Q psy4818 411 VFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIV-PEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNP 489 (734)
Q Consensus 411 l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P 489 (734)
+++..+++.+|.++|.+|. .+. .......... ..++.....++++++++ ||.+|+++++.|++. ++.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~-dg~~i~~~l~~p~~~---~~~P 153 (386)
T 2jbw_A 85 LLMSAALCAQYAQFLWFDE-----RRQ--KGQARKVELYQKAAPLLSPPAERHELVV-DGIPMPVYVRIPEGP---GPHP 153 (386)
T ss_dssp HHHHHHHHHHHHHTTCCST-----HHH--HHHHHHHHHHHHHGGGSSSCEEEEEEEE-TTEEEEEEEECCSSS---CCEE
T ss_pred HHHHHHHhhceeeeeccCC-----CCC--HHHHHHHHHHHHHHhhcCCCeEEEEEEe-CCEEEEEEEEcCCCC---CCCC
Confidence 5556667778888887765 111 0000000001 01222345789999988 899999999999873 6789
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 569 (734)
+||++||+.+... ..+.. ...|+++||+|+++|+||+|+.. ..........+++.+++++|.+++.+++++
T Consensus 154 ~vl~~hG~~~~~~-~~~~~--~~~l~~~G~~v~~~d~rG~G~s~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 224 (386)
T 2jbw_A 154 AVIMLGGLESTKE-ESFQM--ENLVLDRGMATATFDGPGQGEMF------EYKRIAGDYEKYTSAVVDLLTKLEAIRNDA 224 (386)
T ss_dssp EEEEECCSSCCTT-TTHHH--HHHHHHTTCEEEEECCTTSGGGT------TTCCSCSCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred EEEEeCCCCccHH-HHHHH--HHHHHhCCCEEEEECCCCCCCCC------CCCCCCccHHHHHHHHHHHHHhCCCcCccc
Confidence 9999888654333 22332 45566679999999999966541 111223334457889999999998899999
Q ss_pred EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc----ccccccCCCCCHHHH-HHHHhCCccCCCCC
Q psy4818 570 ITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY----YSESEFGSPNNKTHF-HNLLSYSPLHNIKV 644 (734)
Q Consensus 570 i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~----~~~~~~g~~~~~~~~-~~~~~~sp~~~~~~ 644 (734)
|+|+|+|+||+++++++.+ |++|+++|+. |+.++...... ... .+...+|.+...+.+ ..+..++|..++..
T Consensus 225 i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 301 (386)
T 2jbw_A 225 IGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDL-ETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQ 301 (386)
T ss_dssp EEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGG-SCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGG
T ss_pred EEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHh-ccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcc
Confidence 9999999999999999998 8899999999 99987654421 110 111234554444555 67788999888875
Q ss_pred CCCCccCCcEEEEecCCCCCCCChHHHHHHHHH-HhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 645 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL-QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 645 p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
+++| +||++|++|. |++.++.+++++| +. ++++++++++||.+.. ...+....+.+||.+
T Consensus 302 ----i~~P-~Lii~G~~D~-v~~~~~~~l~~~l~~~----------~~~~~~~~~~gH~~~~---~~~~~~~~i~~fl~~ 362 (386)
T 2jbw_A 302 ----IACP-TYILHGVHDE-VPLSFVDTVLELVPAE----------HLNLVVEKDGDHCCHN---LGIRPRLEMADWLYD 362 (386)
T ss_dssp ----CCSC-EEEEEETTSS-SCTHHHHHHHHHSCGG----------GEEEEEETTCCGGGGG---GTTHHHHHHHHHHHH
T ss_pred ----cCCC-EEEEECCCCC-CCHHHHHHHHHHhcCC----------CcEEEEeCCCCcCCcc---chHHHHHHHHHHHHH
Confidence 7777 9999999999 9999999999988 42 4689999999997632 235677889999999
Q ss_pred HcCCC
Q psy4818 724 SLGLK 728 (734)
Q Consensus 724 ~l~~~ 728 (734)
+|+..
T Consensus 363 ~l~~~ 367 (386)
T 2jbw_A 363 VLVAG 367 (386)
T ss_dssp HHTSS
T ss_pred hcCCc
Confidence 99865
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-23 Score=214.38 Aligned_cols=243 Identities=14% Similarity=0.069 Sum_probs=169.5
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccHHHHHHHHh-cCeEEEEEecccCCCC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSISRCMFLRH-FNGIYAIPNIRGGGEL 532 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~ 532 (734)
..+..+.+++++.|| .|++.+++|++ ...|+||++|||..... ...+.. ....|++ +||+|+.+|||+++++
T Consensus 59 ~~~~~~~~~~~~~~g-~i~~~~~~p~~----~~~p~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~V~~~dyr~~p~~ 132 (326)
T 3ga7_A 59 PSMTTRTCAVPTPYG-DVTTRLYSPQP----TSQATLYYLHGGGFILGNLDTHDR-IMRLLARYTGCTVIGIDYSLSPQA 132 (326)
T ss_dssp CCCEEEEEEECCTTS-CEEEEEEESSS----SCSCEEEEECCSTTTSCCTTTTHH-HHHHHHHHHCSEEEEECCCCTTTS
T ss_pred CCcceEEEEeecCCC-CeEEEEEeCCC----CCCcEEEEECCCCcccCChhhhHH-HHHHHHHHcCCEEEEeeCCCCCCC
Confidence 345669999999999 79999999975 23499999999863332 223333 4455554 6999999999997764
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCCc------eeEEEEcCCcc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPEL------YGAALILVGAL 603 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~~------~~a~v~~~~~~ 603 (734)
. ....++|+.++++|+.++. .+|++||+|+|+|+||++++.++.+.|+. ++++|+.+|+.
T Consensus 133 ~-----------~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~ 201 (326)
T 3ga7_A 133 R-----------YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLY 201 (326)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCC
T ss_pred C-----------CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEecccc
Confidence 3 2234689999999998863 47999999999999999999999887764 89999999988
Q ss_pred hhccccccccCcccccccCCCCCHHHHHHH---------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHH
Q psy4818 604 DMLRFNKFTIAYYSESEFGSPNNKTHFHNL---------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674 (734)
Q Consensus 604 d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~ 674 (734)
+......... +...+. ....+....+ ...+|+............||+||+||+.|+.| .++.+++
T Consensus 202 ~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~~ 275 (326)
T 3ga7_A 202 GLQDSVSRRL---FGGAWD-GLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLLH 275 (326)
T ss_dssp SCSCCHHHHH---CCCTTT-TCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHHH
T ss_pred ccCCChhHhh---hcCCCC-CCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHHH
Confidence 7543211000 000000 0111111111 11233322100000024556999999999988 5899999
Q ss_pred HHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHcCC
Q psy4818 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 675 ~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 727 (734)
++|++. |+++++++|++++|++... .....+...++.+||.++|+.
T Consensus 276 ~~l~~~-------g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 276 QTLQAH-------QQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHC-------CCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 999999 9999999999999998432 122357788899999999853
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=227.30 Aligned_cols=284 Identities=12% Similarity=0.061 Sum_probs=175.0
Q ss_pred CcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeE-EeeccCC-CCCC---CCceEEEEEEEcCCCcEEeEEEEEe
Q psy4818 405 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTI-FRETIVP-EFEP---TLFQTKQVYFRSKDGTRVPMYIIHR 479 (734)
Q Consensus 405 ~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~-~~~~---~~~~~~~~~~~s~dg~~i~~~~~~p 479 (734)
+++.+++++.+.++..|...++++. +| .... +..+..+ ..++ ..+..+.+.+.+ +..+.+.++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g--~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P 73 (338)
T 2o7r_A 4 DHLETTGSSDPNTNLLKYLPIVLNP------DR--TITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLP 73 (338)
T ss_dssp --------------CTTTCSCEECT------TS--CEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEE
T ss_pred CCCCCceeeccCcccccccceEECC------CC--eEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeC
Confidence 3455678888888877777677765 33 2221 1222222 2222 457888999876 55688899999
Q ss_pred ccc-cCCCCCcEEEEecCCCCCcCCcc---ccHHHHHHHH-hcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHH
Q psy4818 480 VGA-LRNRRNPVIIYGYGGYGVSVLPT---FSISRCMFLR-HFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA 554 (734)
Q Consensus 480 ~~~-~~~~~~P~vv~~hGg~~~~~~~~---~~~~~~~~l~-~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 554 (734)
++. ..+++.|+||++|||........ |... ...|+ ++||+|+.+|+||+++.. ....++|+.+
T Consensus 74 ~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~-~~~la~~~g~~vv~~d~rg~~~~~-----------~~~~~~d~~~ 141 (338)
T 2o7r_A 74 RHALYNSAKLPLVVYFHGGGFILFSAASTIFHDF-CCEMAVHAGVVIASVDYRLAPEHR-----------LPAAYDDAME 141 (338)
T ss_dssp GGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHH-HHHHHHHHTCEEEEEECCCTTTTC-----------TTHHHHHHHH
T ss_pred CCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHH-HHHHHHHCCcEEEEecCCCCCCCC-----------CchHHHHHHH
Confidence 874 34578999999999864433222 4433 34454 579999999999976532 2245789999
Q ss_pred HHHHHHHcC------CCCCCcEEEEEcChHHHHHHHHHhcCCC--------ceeEEEEcCCcchhccccccccCcccccc
Q psy4818 555 AAEYMINKK------YTKPKYITIMGGSNGGLLVGACLNQRPE--------LYGAALILVGALDMLRFNKFTIAYYSESE 620 (734)
Q Consensus 555 ~~~~l~~~~------~~d~~ri~i~G~S~GG~~~~~~~~~~p~--------~~~a~v~~~~~~d~~~~~~~~~~~~~~~~ 620 (734)
+++||.++. .+|++|++|+|+|+||++++.++.++|+ .++++|+.+|+++......... ..
T Consensus 142 ~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~-----~~ 216 (338)
T 2o7r_A 142 ALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSEL-----RL 216 (338)
T ss_dssp HHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHH-----HT
T ss_pred HHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhh-----cc
Confidence 999998763 2677999999999999999999999888 8999999999887543211000 00
Q ss_pred cCCCC-CHHHHHHHH-------------hCCccCC------CCCCCCCccCC-cEEEEecCCCCCCCChHHHHHHHHHHh
Q psy4818 621 FGSPN-NKTHFHNLL-------------SYSPLHN------IKVPPNNTQYP-ATLVLTGDHDDRVPPLHSYKFIATLQE 679 (734)
Q Consensus 621 ~g~~~-~~~~~~~~~-------------~~sp~~~------~~~p~~~~~~P-~~Li~~g~~D~~v~~~~~~~~~~~L~~ 679 (734)
...+. .......+. ..+|+.. +... .+.| |+||++|++|..++ ++.+++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~P~Lvi~G~~D~~~~--~~~~~~~~l~~ 291 (338)
T 2o7r_A 217 ANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKI---RSLGWRVMVVGCHGDPMID--RQMELAERLEK 291 (338)
T ss_dssp TTCSSSCHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHH---HHHTCEEEEEEETTSTTHH--HHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhh---cCCCCCEEEEECCCCcchH--HHHHHHHHHHH
Confidence 00000 000000000 0112111 1110 1144 59999999999886 66889999998
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCc-hHHhHHHHHHHHHHHHHHcCC
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTP-LMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~~ 727 (734)
. +.++++++++++||++... .....+....+.+||.++++.
T Consensus 292 ~-------~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~~ 333 (338)
T 2o7r_A 292 K-------GVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCTT 333 (338)
T ss_dssp T-------TCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC-----
T ss_pred C-------CCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhccc
Confidence 8 8899999999999987532 222356778899999988764
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=210.39 Aligned_cols=238 Identities=15% Similarity=0.111 Sum_probs=170.4
Q ss_pred EEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc
Q psy4818 462 VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 462 ~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
..+.+.+|..+.+++..|....++++.|+||++|||............+...|+++||.|+++|+||.|+.. .+.
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~-~~~---- 91 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGT-NYN---- 91 (276)
T ss_dssp EECCCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCC-CSC----
T ss_pred ccccCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcC-CCC----
Confidence 345567888888777665443234788999999997533333333344556777789999999999976422 111
Q ss_pred cccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc-CCCceeEEEEcCCcchhccccccccCccc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ-RPELYGAALILVGALDMLRFNKFTIAYYS 617 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 617 (734)
.....++|+.+++++|.++. .+|+++|+|+|+|+||++++.++.+ .+..++++|+.+|+.++....... ..+
T Consensus 92 --~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~--~~~ 167 (276)
T 3hxk_A 92 --FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSD--LSH 167 (276)
T ss_dssp --THHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSS--SSS
T ss_pred --cCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcc--hhh
Confidence 11134689999999998863 3789999999999999999999987 788999999999998865442211 111
Q ss_pred ccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC
Q psy4818 618 ESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697 (734)
Q Consensus 618 ~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 697 (734)
..+- +.. . ..++|...+.. +..| +||+||++|..||+.++.+++++|++. +.++++++++
T Consensus 168 -~~~~-~~~---~---~~~~~~~~~~~----~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------~~~~~~~~~~ 227 (276)
T 3hxk_A 168 -FNFE-IEN---I---SEYNISEKVTS----STPP-TFIWHTADDEGVPIYNSLKYCDRLSKH-------QVPFEAHFFE 227 (276)
T ss_dssp -SCCC-CSC---C---GGGBTTTTCCT----TSCC-EEEEEETTCSSSCTHHHHHHHHHHHTT-------TCCEEEEEES
T ss_pred -hhcC-chh---h---hhCChhhcccc----CCCC-EEEEecCCCceeChHHHHHHHHHHHHc-------CCCeEEEEEC
Confidence 1111 111 1 35567766665 5556 999999999999999999999999988 8899999999
Q ss_pred CCCCCCCCchH-----------HhHHHHHHHHHHHHHHcCCC
Q psy4818 698 DAGHGQGTPLM-----------KSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 698 ~~gH~~~~~~~-----------~~~~~~~~~~~fl~~~l~~~ 728 (734)
++||++..... ...++...+.+||.++....
T Consensus 228 ~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~ 269 (276)
T 3hxk_A 228 SGPHGVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKNL 269 (276)
T ss_dssp CCCTTCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHTT
T ss_pred CCCCCccccCccccccccccCchHHHHHHHHHHHHHhCcccc
Confidence 99998864222 23567777889999987543
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=218.59 Aligned_cols=247 Identities=19% Similarity=0.190 Sum_probs=175.0
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
...+.++++++++.||.+|+++++.|++. .++.|+||++||+.+....+ ... ..++++||+|+++|+||.|+.+
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~~~~---~~~-~~l~~~G~~v~~~d~rG~g~s~ 136 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFP---HDW-LFWPSMGYICFVMDTRGQGSGW 136 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCCCCG---GGG-CHHHHTTCEEEEECCTTCCCSS
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCCCCc---hhh-cchhhCCCEEEEecCCCCCCcc
Confidence 34568999999999999999999999863 46789999999986554322 122 2345579999999999988554
Q ss_pred chhhh-----------------ccccccC----CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc
Q psy4818 534 EDWHN-----------------AGRLLKK----QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL 592 (734)
Q Consensus 534 ~~~~~-----------------~~~~~~~----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~ 592 (734)
..... .+..... ...++|+.+++++|.++..+|++||+|+|+|+||++++.++.++|+
T Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~- 215 (337)
T 1vlq_A 137 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK- 215 (337)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCSS-
T ss_pred cCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCCC-
Confidence 21000 0000000 1357899999999999888899999999999999999999999984
Q ss_pred eeEEEEcCCcchh-ccccccccCcccc--ccc--CCCC-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCC
Q psy4818 593 YGAALILVGALDM-LRFNKFTIAYYSE--SEF--GSPN-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVP 666 (734)
Q Consensus 593 ~~a~v~~~~~~d~-~~~~~~~~~~~~~--~~~--g~~~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~ 666 (734)
++++|+.+|+++. ...........+. .+| ..+. ..+.+..+..++|...+.. ++.| +||++|++|.+||
T Consensus 216 v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~lii~G~~D~~~p 290 (337)
T 1vlq_A 216 AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAAR----AKIP-ALFSVGLMDNICP 290 (337)
T ss_dssp CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTT----CCSC-EEEEEETTCSSSC
T ss_pred ccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHH----cCCC-EEEEeeCCCCCCC
Confidence 7899988886542 2211110000010 111 2232 2334455666777766665 6666 9999999999999
Q ss_pred ChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 667 PLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 667 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+.++.+++++|+ .++++++++++||++.. .+....+++||.++|+.
T Consensus 291 ~~~~~~~~~~l~----------~~~~~~~~~~~gH~~~~-----~~~~~~~~~fl~~~l~~ 336 (337)
T 1vlq_A 291 PSTVFAAYNYYA----------GPKEIRIYPYNNHEGGG-----SFQAVEQVKFLKKLFEK 336 (337)
T ss_dssp HHHHHHHHHHCC----------SSEEEEEETTCCTTTTH-----HHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHhcC----------CCcEEEEcCCCCCCCcc-----hhhHHHHHHHHHHHHhc
Confidence 999998888763 25789999999999742 24567789999998863
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=208.93 Aligned_cols=216 Identities=15% Similarity=0.120 Sum_probs=140.3
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..|+.+....||.+|+++++.|++ .++.|+||++||+.+....+.+.. .+++|+++||+|+.+|+||+|+.+....
T Consensus 29 ~~e~~~~~~~dG~~i~g~l~~P~~---~~~~p~Vl~~HG~g~~~~~~~~~~-~a~~la~~Gy~Vl~~D~rG~G~s~~~~~ 104 (259)
T 4ao6_A 29 VQERGFSLEVDGRTVPGVYWSPAE---GSSDRLVLLGHGGTTHKKVEYIEQ-VAKLLVGRGISAMAIDGPGHGERASVQA 104 (259)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS---SCCSEEEEEEC--------CHHHH-HHHHHHHTTEEEEEECCCC---------
T ss_pred ceEEEEEEeeCCeEEEEEEEeCCC---CCCCCEEEEeCCCcccccchHHHH-HHHHHHHCCCeEEeeccCCCCCCCCccc
Confidence 344444445799999999999986 457799999999977655544443 4677888999999999999887654332
Q ss_pred hccccccC---------------CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 538 NAGRLLKK---------------QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 538 ~~~~~~~~---------------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
........ ...+.|..+++++|... +|++||+++|+|+||++++.++.+.|++ +++|+..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pri-~Aav~~~~~ 181 (259)
T 4ao6_A 105 GREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKRI-KVALLGLMG 181 (259)
T ss_dssp ----CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTTE-EEEEEESCC
T ss_pred ccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCce-EEEEEeccc
Confidence 21111100 11245777788887654 7899999999999999999999998865 666654433
Q ss_pred chhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 603 LDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 603 ~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
.+.. ... ++...+.. +++| +||+||++|.+||++++++++++|.
T Consensus 182 ~~~~-------------------~~~--------~~~~~a~~----i~~P-~Li~hG~~D~~vp~~~~~~l~~al~---- 225 (259)
T 4ao6_A 182 VEGV-------------------NGE--------DLVRLAPQ----VTCP-VRYLLQWDDELVSLQSGLELFGKLG---- 225 (259)
T ss_dssp TTST-------------------THH--------HHHHHGGG----CCSC-EEEEEETTCSSSCHHHHHHHHHHCC----
T ss_pred cccc-------------------ccc--------chhhhhcc----CCCC-EEEEecCCCCCCCHHHHHHHHHHhC----
Confidence 2110 001 11122232 6667 9999999999999999999999884
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+....++++++ +|... + +.+..+.+++||.++|+
T Consensus 226 -----~~~k~l~~~~G-~H~~~-p---~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 226 -----TKQKTLHVNPG-KHSAV-P---TWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp -----CSSEEEEEESS-CTTCC-C---HHHHTHHHHHHHHHHCC
T ss_pred -----CCCeEEEEeCC-CCCCc-C---HHHHHHHHHHHHHHhcC
Confidence 33567888887 56433 2 13566778999999985
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-23 Score=207.95 Aligned_cols=236 Identities=11% Similarity=0.038 Sum_probs=164.3
Q ss_pred ceEEEEEEEcCCCcEEeEEEEEecc---ccCCCCCcEEEEecCCCCCcC-CccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 457 FQTKQVYFRSKDGTRVPMYIIHRVG---ALRNRRNPVIIYGYGGYGVSV-LPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 457 ~~~~~~~~~s~dg~~i~~~~~~p~~---~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
+..+.+.+. .+|..+++.++.|+. +...++.|+||++|||..... ...|. .+...|+++||.|+++|+||+|+.
T Consensus 2 m~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~g~~ 79 (277)
T 3bxp_A 2 MQVEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEA-PIATRMMAAGMHTVVLNYQLIVGD 79 (277)
T ss_dssp EEEEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHH-HHHHHHHHTTCEEEEEECCCSTTT
T ss_pred cceEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccch-HHHHHHHHCCCEEEEEecccCCCC
Confidence 445677774 577789999999983 123567899999999743322 22333 345666778999999999996633
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcC--------------CCceeE
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQR--------------PELYGA 595 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~--------------p~~~~a 595 (734)
+. .....++|+.+++++|.+.. .+|+++|+|+|+|+||++++.++.++ |..+++
T Consensus 80 ~~---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 150 (277)
T 3bxp_A 80 QS---------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAA 150 (277)
T ss_dssp CC---------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSE
T ss_pred Cc---------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCE
Confidence 32 12234779999999987752 26788999999999999999999875 678999
Q ss_pred EEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHH
Q psy4818 596 ALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIA 675 (734)
Q Consensus 596 ~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~ 675 (734)
+|+.+|+.++...... ...+...+ +..+...+|...+.. ...| +||+||++|..||+.++.++++
T Consensus 151 ~v~~~p~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~----~~~P-~lii~G~~D~~vp~~~~~~~~~ 215 (277)
T 3bxp_A 151 IILGYPVIDLTAGFPT--TSAARNQI--------TTDARLWAAQRLVTP----ASKP-AFVWQTATDESVPPINSLKYVQ 215 (277)
T ss_dssp EEEESCCCBTTSSSSS--SHHHHHHH--------CSCGGGSBGGGGCCT----TSCC-EEEEECTTCCCSCTHHHHHHHH
T ss_pred EEEeCCcccCCCCCCC--ccccchhc--------cchhhhcCHhhcccc----CCCC-EEEEeeCCCCccChHHHHHHHH
Confidence 9999999875432110 00000000 001234566666554 4445 9999999999999999999999
Q ss_pred HHHhhhCCCCCCCCcEEEEEeCCCCCCCCCch-------------HHhHHHHHHHHHHHHHHc
Q psy4818 676 TLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL-------------MKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 676 ~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-------------~~~~~~~~~~~~fl~~~l 725 (734)
+|++. +.+++++++++++|++.... ....++...+.+||.++.
T Consensus 216 ~l~~~-------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 216 AMLQH-------QVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHHHT-------TCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHC-------CCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 99998 88999999999999775332 223577888899998764
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=215.57 Aligned_cols=246 Identities=15% Similarity=0.116 Sum_probs=166.9
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEE-eccc--------------------cCCCCCcEEEEecCCCCCcCCc---cccHHH
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIH-RVGA--------------------LRNRRNPVIIYGYGGYGVSVLP---TFSISR 510 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~-p~~~--------------------~~~~~~P~vv~~hGg~~~~~~~---~~~~~~ 510 (734)
..+..+.+.+.+.+| +.+.+|+ |+.. ...++.|+||++|||....... .|.. +
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~-~ 136 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDS-L 136 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHH-H
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHH-H
Confidence 456789999998888 7888887 8753 2346789999999985433222 2333 3
Q ss_pred HHHHHh-cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC----CCCCC-cEEEEEcChHHHHHHH
Q psy4818 511 CMFLRH-FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK----YTKPK-YITIMGGSNGGLLVGA 584 (734)
Q Consensus 511 ~~~l~~-~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-ri~i~G~S~GG~~~~~ 584 (734)
...|++ .||+|+.+|||++++.. ....++|+.++++||.++. .+|++ ||+|+|+|+||++++.
T Consensus 137 ~~~la~~~g~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~ 205 (365)
T 3ebl_A 137 CRRFVKLSKGVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHH 205 (365)
T ss_dssp HHHHHHHHTSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHH
T ss_pred HHHHHHHCCCEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHH
Confidence 344544 49999999999977543 1234789999999999765 58999 9999999999999999
Q ss_pred HHhcCCC---ceeEEEEcCCcchhccccccccCcccccccCCC-CCHHHHHHH-------------HhCCccC-CCCCCC
Q psy4818 585 CLNQRPE---LYGAALILVGALDMLRFNKFTIAYYSESEFGSP-NNKTHFHNL-------------LSYSPLH-NIKVPP 646 (734)
Q Consensus 585 ~~~~~p~---~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~-------------~~~sp~~-~~~~p~ 646 (734)
++.+.++ .++++|+.+|+++......... .....+ ...+....+ ...+|+. ......
T Consensus 206 ~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 280 (365)
T 3ebl_A 206 VAVRAADEGVKVCGNILLNAMFGGTERTESER-----RLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLG 280 (365)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCCCSSCCHHHH-----HHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCCT
T ss_pred HHHHHHhcCCceeeEEEEccccCCCcCChhhh-----hcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhc
Confidence 9987665 7899999999987653221000 000000 001111100 0122332 111100
Q ss_pred CCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC--chHHhHHHHHHHHHHHHHH
Q psy4818 647 NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT--PLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 647 ~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~ 724 (734)
++.+||+||+||++|..+ .++.+++++|++. |+++++++|++++|++.. ......+.+.++.+||.++
T Consensus 281 -~~~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~-------g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~ 350 (365)
T 3ebl_A 281 -GLPFAKSLIIVSGLDLTC--DRQLAYADALRED-------GHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNAN 350 (365)
T ss_dssp -TSCCCCEEEEEETTSTTH--HHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCCEEEEEcCcccch--hHHHHHHHHHHHC-------CCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHh
Confidence 135678999999999654 5678999999998 999999999999999761 1123468888999999999
Q ss_pred cCCCC
Q psy4818 725 LGLKY 729 (734)
Q Consensus 725 l~~~~ 729 (734)
++.+.
T Consensus 351 ~~~~~ 355 (365)
T 3ebl_A 351 LYYGS 355 (365)
T ss_dssp CC---
T ss_pred hhccc
Confidence 97653
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=201.82 Aligned_cols=225 Identities=16% Similarity=0.186 Sum_probs=164.0
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
.+..+.+.+++ +|..+.++++.|++. .++.|+||++||..+.. ..+ ..++..|+++||.|+++|+||.|+....
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~p~~~--~~~~p~vv~~HG~~g~~--~~~-~~~~~~l~~~G~~v~~~d~~g~g~~~~~ 76 (241)
T 3f67_A 3 AIIAGETSIPS-QGENMPAYHARPKNA--DGPLPIVIVVQEIFGVH--EHI-RDLCRRLAQEGYLAIAPELYFRQGDPNE 76 (241)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEETTC--CSCEEEEEEECCTTCSC--HHH-HHHHHHHHHTTCEEEEECTTTTTCCGGG
T ss_pred cceeeeEEEec-CCcceEEEEecCCCC--CCCCCEEEEEcCcCccC--HHH-HHHHHHHHHCCcEEEEecccccCCCCCc
Confidence 45678889988 889999999999862 35689999999966543 223 3345667778999999999997665443
Q ss_pred hhhcccc-------ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 536 WHNAGRL-------LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 536 ~~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
+...... .......+|+.+++++|.+++ +|+++|+++|+|+||.+++.++.++|+ ++++|+.+|......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~~- 153 (241)
T 3f67_A 77 YHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGEK- 153 (241)
T ss_dssp CCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCCC-
T ss_pred hhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCCC-
Confidence 3221110 011234789999999998887 888999999999999999999999998 566766555421100
Q ss_pred cccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCC
Q psy4818 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK 688 (734)
Q Consensus 609 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~ 688 (734)
.. +...+|...+.. ++.| +|+++|++|..|++.++.+++++|++. +
T Consensus 154 ----------~~------------~~~~~~~~~~~~----~~~P-~l~~~g~~D~~~~~~~~~~~~~~l~~~-------~ 199 (241)
T 3f67_A 154 ----------SL------------NSPKHPVDIAVD----LNAP-VLGLYGAKDASIPQDTVETMRQALRAA-------N 199 (241)
T ss_dssp ----------CS------------SSCCCHHHHGGG----CCSC-EEEEEETTCTTSCHHHHHHHHHHHHHT-------T
T ss_pred ----------cc------------CCccCHHHhhhh----cCCC-EEEEEecCCCCCCHHHHHHHHHHHHHc-------C
Confidence 00 011223333333 4555 999999999999999999999999988 8
Q ss_pred CcEEEEEeCCCCCCCCCc------hHHhHHHHHHHHHHHHH
Q psy4818 689 NPLLLRVEQDAGHGQGTP------LMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 689 ~~~~~~~~~~~gH~~~~~------~~~~~~~~~~~~~fl~~ 723 (734)
.+++++++++++|++... .....+.+..+++||.+
T Consensus 200 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~ 240 (241)
T 3f67_A 200 ATAEIVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQ 240 (241)
T ss_dssp CSEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 899999999999998632 22235667778899865
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=216.40 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=171.3
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccc--------cH-HHHHHHHhcCeEEEEEecc
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTF--------SI-SRCMFLRHFNGIYAIPNIR 527 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~--------~~-~~~~~l~~~G~~v~~~~~r 527 (734)
..+.+.+.+. ||..+++.++.|+++.+.++.|+||++||+.+....+.. .. ....+....|+.|+.+|+|
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~ 222 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCP 222 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCC
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCC
Confidence 4677889998 999999999999987667889999999998654332111 00 0122344568999999999
Q ss_pred cCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc
Q psy4818 528 GGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR 607 (734)
Q Consensus 528 G~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~ 607 (734)
|++++|..|...+........++|+.+++++++++..+|++||+|+|+|+||++++.++.++|++|+++|+.+|..+..
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~~- 301 (380)
T 3doh_A 223 PNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS- 301 (380)
T ss_dssp TTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGG-
T ss_pred CCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCChh-
Confidence 9999998888755544556678999999999998877999999999999999999999999999999999999875210
Q ss_pred ccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCcc-CCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCC
Q psy4818 608 FNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQ-YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPY 686 (734)
Q Consensus 608 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~-~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~ 686 (734)
.+.. +. .| +||+||+.|..||+.++.+++++|++.
T Consensus 302 ---------------------------------~~~~----~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~------ 337 (380)
T 3doh_A 302 ---------------------------------KVER----IKDIP-IWVFHAEDDPVVPVENSRVLVKKLAEI------ 337 (380)
T ss_dssp ---------------------------------GGGG----GTTSC-EEEEEETTCSSSCTHHHHHHHHHHHHT------
T ss_pred ---------------------------------hhhh----ccCCC-EEEEecCCCCccCHHHHHHHHHHHHHC------
Confidence 0011 22 34 999999999999999999999999998
Q ss_pred CCCcEEEEEeCCC---CCCCCCchHHhHHHHH--HHHHHHHHH
Q psy4818 687 QKNPLLLRVEQDA---GHGQGTPLMKSIEEMT--DIYVFLMKS 724 (734)
Q Consensus 687 ~~~~~~~~~~~~~---gH~~~~~~~~~~~~~~--~~~~fl~~~ 724 (734)
|.++++++++++ +|++..... ....+. .+++||.++
T Consensus 338 -g~~~~~~~~~~~~h~~h~~~~H~~-~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 338 -GGKVRYTEYEKGFMEKHGWDPHGS-WIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp -TCCEEEEEECTTHHHHTTCCTTCT-HHHHHTCHHHHHHHHTC
T ss_pred -CCceEEEEecCCcccCCCCCCchh-HHHhcCCHHHHHHHHhh
Confidence 889999999999 444332211 133444 788999864
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=213.29 Aligned_cols=237 Identities=17% Similarity=0.116 Sum_probs=170.2
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCC-cCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
..+..+.+++++.||..|+++++.|.+ ++.|+||++|||... .....+...+..++.+.||+|+.+|||+++++.
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~ 131 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP 131 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Confidence 356788999999999999999999975 578999999997432 333344444445554569999999999977643
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchhc
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDML 606 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~~ 606 (734)
....++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ .++++++.+|++|..
T Consensus 132 -----------~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 200 (317)
T 3qh4_A 132 -----------YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDR 200 (317)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSS
T ss_pred -----------CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCC
Confidence 123478999999999886 34789999999999999999999886554 489999999999875
Q ss_pred cccccccCcccccccC-CC-CCHHHH----HHHH-------hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHH
Q psy4818 607 RFNKFTIAYYSESEFG-SP-NNKTHF----HNLL-------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKF 673 (734)
Q Consensus 607 ~~~~~~~~~~~~~~~g-~~-~~~~~~----~~~~-------~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~ 673 (734)
..... .++. .+ ...... ..+. ..+|...... ...||+||+||+.|..++ ++..+
T Consensus 201 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l----~~lpP~li~~G~~D~~~~--~~~~~ 267 (317)
T 3qh4_A 201 PTASR-------SEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQL----AGLPATLITCGEIDPFRD--EVLDY 267 (317)
T ss_dssp CCHHH-------HHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGCSCC----TTCCCEEEEEEEESTTHH--HHHHH
T ss_pred CCcCH-------HHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCccccc----CCCCceeEEecCcCCCch--hHHHH
Confidence 11100 0010 00 111111 1111 1233322221 345679999999998765 88999
Q ss_pred HHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC---chHHhHHHHHHHHHHHHHHcC
Q psy4818 674 IATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT---PLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 674 ~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+++|++. |+++++++|++++|+|.. ......+....+.+||.++|+
T Consensus 268 a~~l~~~-------g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 268 AQRLLGA-------GVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHHT-------TCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHc-------CCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 9999998 999999999999999642 112235778889999999885
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=224.14 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=178.2
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc----CC-ccccHHHH---HHHHhcCeEEEEEe
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS----VL-PTFSISRC---MFLRHFNGIYAIPN 525 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~----~~-~~~~~~~~---~~l~~~G~~v~~~~ 525 (734)
...+..+.+.+++.||.+|.++++.|++. ++.|+||++||..... .. ..|...+. ++|+++||+|+.+|
T Consensus 20 ~~~~~~~~v~i~~~DG~~L~~~~~~P~~~---~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D 96 (615)
T 1mpx_A 20 SNDYIKREVMIPMRDGVKLHTVIVLPKGA---KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 96 (615)
T ss_dssp TCSEEEEEEEEECTTSCEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred cCCCEEEEEEEECCCCCEEEEEEEeCCCC---CCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEEC
Confidence 34667888999999999999999999863 5789999998643221 11 11211121 56777899999999
Q ss_pred cccCCCCCchhhhccc-----cccCCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 526 IRGGGELGEDWHNAGR-----LLKKQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 526 ~rG~~~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
+||+|+++..+..... ..++....+|+.++++||.++ .+.| .||+++|+||||+++++++.++|+.++|+|+.
T Consensus 97 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~ 175 (615)
T 1mpx_A 97 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPE 175 (615)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEec
Confidence 9999888766544311 122237789999999999998 7777 59999999999999999998889999999999
Q ss_pred CCcchhcc-ccccccCc------ccccccC----CC--------C----------------------CH--H-------H
Q psy4818 600 VGALDMLR-FNKFTIAY------YSESEFG----SP--------N----------------------NK--T-------H 629 (734)
Q Consensus 600 ~~~~d~~~-~~~~~~~~------~~~~~~g----~~--------~----------------------~~--~-------~ 629 (734)
+|+.|+.. ......+. .|...++ .+ + .+ + .
T Consensus 176 ~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 255 (615)
T 1mpx_A 176 SPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAY 255 (615)
T ss_dssp SCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSS
T ss_pred CCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCc
Confidence 99999543 10000000 0100000 00 0 00 0 0
Q ss_pred HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCC---cEEEEEeCCCCCCCCC-
Q psy4818 630 FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN---PLLLRVEQDAGHGQGT- 705 (734)
Q Consensus 630 ~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~---~~~~~~~~~~gH~~~~- 705 (734)
-+++++.||+.++.+. .+++| +|++||.+|.+ ++.++.+++++|++. |. +..+++.|. +|+...
T Consensus 256 d~~w~~~Sp~~~~~~~--~I~~P-~Lii~G~~D~~-~~~~~~~~~~aL~~~-------g~p~~~~~lvigp~-~H~~~~~ 323 (615)
T 1mpx_A 256 DAFWQEQALDKVMART--PLKVP-TMWLQGLWDQE-DMWGAIHSYAAMEPR-------DKRNTLNYLVMGPW-RHSQVNY 323 (615)
T ss_dssp CHHHHTTCHHHHHHTS--CCCSC-EEEEEETTCSS-CSSHHHHHHHHHGGG-------CTTSSSEEEEEESC-CTTGGGS
T ss_pred ChhhhhcChhhhhhcc--CCCCC-EEEeecccCcc-ccccHHHHHHHHHhh-------cCCCcCCEEEECCC-CCCCccc
Confidence 0234566776554320 16667 99999999998 889999999999988 54 488999888 697511
Q ss_pred -----------chHHhHHHHHHHHHHHHHHcCCC
Q psy4818 706 -----------PLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 706 -----------~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
...........+++||+++|+..
T Consensus 324 ~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 324 DGSALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp CCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cccccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 01111222566899999999865
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=209.07 Aligned_cols=243 Identities=17% Similarity=0.088 Sum_probs=169.2
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCC-cCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
..+..+.+.+++.||..|+++++.|++ .++.|+||++||+.+. ... +. ... .++++||.|+++|+||.|+.+
T Consensus 52 ~~~~~~~~~~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~~~~--~~-~~~-~l~~~g~~v~~~d~rg~g~s~ 124 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASYDGE--IH-EMV-NWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCSGGG--HH-HHH-HHHHTTCEEEEECCTTTSSSC
T ss_pred CCeEEEEEEEEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCCCCCC--cc-ccc-chhhCCcEEEEecCCCCCCCC
Confidence 455788999999899999999999986 4678999999998765 322 22 223 445579999999999988776
Q ss_pred chhhhccccc-----cC---------CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 534 EDWHNAGRLL-----KK---------QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 534 ~~~~~~~~~~-----~~---------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
..+...+... .+ ...++|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~ 203 (318)
T 1l7a_A 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVAD 203 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEE
T ss_pred CcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEec
Confidence 5432211000 00 1347899999999999887899999999999999999999999887 4677778
Q ss_pred CCcch-hccccccccCccc------ccccCCCC-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHH
Q psy4818 600 VGALD-MLRFNKFTIAYYS------ESEFGSPN-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSY 671 (734)
Q Consensus 600 ~~~~d-~~~~~~~~~~~~~------~~~~g~~~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~ 671 (734)
+|+++ +...........| ...++.+. ..+.+..+..+++...+.. ++.| +||++|++|..|++.++.
T Consensus 204 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~li~~g~~D~~~~~~~~~ 278 (318)
T 1l7a_A 204 YPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADR----VKVP-VLMSIGLIDKVTPPSTVF 278 (318)
T ss_dssp SCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGG----CCSC-EEEEEETTCSSSCHHHHH
T ss_pred CCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhh----CCCC-EEEEeccCCCCCCcccHH
Confidence 88643 2221111100011 01111111 1122333444555555554 5666 999999999999999988
Q ss_pred HHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 672 KFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 672 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+++++|. .++++++++++||... .+....+.+||.++|+
T Consensus 279 ~~~~~l~----------~~~~~~~~~~~~H~~~------~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 279 AAYNHLE----------TKKELKVYRYFGHEYI------PAFQTEKLAFFKQILK 317 (318)
T ss_dssp HHHHHCC----------SSEEEEEETTCCSSCC------HHHHHHHHHHHHHHHC
T ss_pred HHHhhcC----------CCeeEEEccCCCCCCc------chhHHHHHHHHHHHhC
Confidence 8887663 3478999999999942 2456778999999886
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=207.57 Aligned_cols=240 Identities=19% Similarity=0.089 Sum_probs=163.1
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
..+..+.+.+ ..|+++++.|++ .++.|+||++|||...... ..+......+..+.||+|+.+|||++++..
T Consensus 55 ~~~~~~~~~~-----~~i~~~~~~p~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~ 126 (322)
T 3fak_A 55 DDIQVEQVTV-----AGCAAEWVRAPG---CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP 126 (322)
T ss_dssp TTCEEEEEEE-----TTEEEEEEECTT---CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred CCeeEEEEee-----CCeEEEEEeCCC---CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC
Confidence 3445555554 238999999976 3578999999998543322 223333334444469999999999977543
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc----eeEEEEcCCcchhcccc
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL----YGAALILVGALDMLRFN 609 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~----~~a~v~~~~~~d~~~~~ 609 (734)
....++|+.++++||.++ .+|++||+|+|+|+||++++.++.+.|+. ++++|+.+|++|+....
T Consensus 127 -----------~~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~ 194 (322)
T 3fak_A 127 -----------FPAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTN 194 (322)
T ss_dssp -----------TTHHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCC
T ss_pred -----------CCcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCC
Confidence 223478999999999988 57999999999999999999998876653 89999999999875432
Q ss_pred ccccCcccccccCCCCCHH-HHHHH--------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q psy4818 610 KFTIAYYSESEFGSPNNKT-HFHNL--------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680 (734)
Q Consensus 610 ~~~~~~~~~~~~g~~~~~~-~~~~~--------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~ 680 (734)
...........+-...... ....+ ...+|+.... ...||+||+||+.|.. ..++.+++++|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-----~~~pP~li~~g~~D~~--~~~~~~~~~~l~~~ 267 (322)
T 3fak_A 195 DSFKTRAEADPMVAPGGINKMAARYLNGADAKHPYASPNFANL-----KGLPPLLIHVGRDEVL--LDDSIKLDAKAKAD 267 (322)
T ss_dssp THHHHTTTTCCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCC-----TTCCCEEEEEETTSTT--HHHHHHHHHHHHHT
T ss_pred cCHHHhCccCcccCHHHHHHHHHHhcCCCCCCCcccCCCcccc-----cCCChHhEEEcCcCcc--HHHHHHHHHHHHHc
Confidence 1000000000000000000 00111 1234553221 3456799999999976 46899999999999
Q ss_pred hCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHcCCC
Q psy4818 681 IGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
|+++++++|++++|++... .....+...++.+||.++|+..
T Consensus 268 -------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3fak_A 268 -------GVKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAAL 311 (322)
T ss_dssp -------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred -------CCCEEEEEeCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999987531 1223577888999999999654
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=205.45 Aligned_cols=234 Identities=16% Similarity=0.038 Sum_probs=165.9
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccc---cCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGA---LRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~---~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
..+.+.+.+.+|..+.+.+| |+.. ..+++.|+||++|||...... ..|. .++..|+++||.|+++|+||.++.+
T Consensus 18 ~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~~~~~ 95 (283)
T 3bjr_A 18 QGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAE-SLAMAFAGHGYQAFYLEYTLLTDQQ 95 (283)
T ss_dssp CSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHH-HHHHHHHTTTCEEEEEECCCTTTCS
T ss_pred CCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccH-HHHHHHHhCCcEEEEEeccCCCccc
Confidence 45667788888888888888 7652 135678999999997532222 2233 3456677789999999999976642
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCCc-------------eeEEE
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPEL-------------YGAAL 597 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~~-------------~~a~v 597 (734)
. ......+|+.+++++|.+.. .+|+++++|+|+|+||++++.++.++|+. ++++|
T Consensus 96 ~---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v 166 (283)
T 3bjr_A 96 P---------LGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVV 166 (283)
T ss_dssp S---------CBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEE
T ss_pred c---------CchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEE
Confidence 0 11234678999999998753 37888999999999999999999999987 89999
Q ss_pred EcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHH
Q psy4818 598 ILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677 (734)
Q Consensus 598 ~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L 677 (734)
+.+|+.++........ ..+...++ .+...+|...+.. +..| +||++|++|..||+.++.+++++|
T Consensus 167 ~~~p~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~----~~~P-~lii~G~~D~~~p~~~~~~~~~~l 231 (283)
T 3bjr_A 167 LGYPVISPLLGFPKDD-ATLATWTP---------TPNELAADQHVNS----DNQP-TFIWTTADDPIVPATNTLAYATAL 231 (283)
T ss_dssp EESCCCCTTSBC---------CCCC---------CGGGGCGGGSCCT----TCCC-EEEEEESCCTTSCTHHHHHHHHHH
T ss_pred EcCCcccccccccccc-chHHHHHH---------HhHhcCHHHhccC----CCCC-EEEEEcCCCCCCChHHHHHHHHHH
Confidence 9999887543211100 00100011 1234566666554 5666 999999999999999999999999
Q ss_pred HhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-----------HhHHHHHHHHHHHHHH
Q psy4818 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-----------KSIEEMTDIYVFLMKS 724 (734)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-----------~~~~~~~~~~~fl~~~ 724 (734)
++. +.++++++++++||++..... ...++...+.+||.++
T Consensus 232 ~~~-------g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 232 ATA-------KIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHT-------TCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHC-------CCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 988 889999999999997653221 1135667788898753
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-22 Score=223.72 Aligned_cols=258 Identities=14% Similarity=0.024 Sum_probs=177.7
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCC-----cCC-ccccHHH--H-HHHHhcCeEEEEEe
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV-----SVL-PTFSISR--C-MFLRHFNGIYAIPN 525 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~-----~~~-~~~~~~~--~-~~l~~~G~~v~~~~ 525 (734)
..+..+.+.+++.||.+|.++++.|++. ++.|+||+.||.... ... ..|...+ . ++|+++||+|+.+|
T Consensus 33 ~~~~~~~v~i~~~DG~~L~~~l~~P~~~---~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D 109 (652)
T 2b9v_A 33 RDYIKREVMVPMRDGVKLYTVIVIPKNA---RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQD 109 (652)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred CCcEEEEEEEECCCCcEEEEEEEecCCC---CCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEe
Confidence 3467788999999999999999999863 578999998853211 111 0111111 1 56677899999999
Q ss_pred cccCCCCCchhhhcc-----ccccCCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 526 IRGGGELGEDWHNAG-----RLLKKQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 526 ~rG~~~~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
+||+|+++..|.... ...++....+|+.++++||.++ ++.| .||+++|+||||+++++++.++|+.|+|+|+.
T Consensus 110 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~ 188 (652)
T 2b9v_A 110 IRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPE 188 (652)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEec
Confidence 999998887765432 1112236789999999999999 8887 59999999999999999999889999999999
Q ss_pred CCcchhcc-ccccccCc------cccccc----CC----C----C----------------------CH---------HH
Q psy4818 600 VGALDMLR-FNKFTIAY------YSESEF----GS----P----N----------------------NK---------TH 629 (734)
Q Consensus 600 ~~~~d~~~-~~~~~~~~------~~~~~~----g~----~----~----------------------~~---------~~ 629 (734)
+|+.|+.. ......+. .|...+ .. + . .+ ..
T Consensus 189 ~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 268 (652)
T 2b9v_A 189 SPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAY 268 (652)
T ss_dssp EECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSS
T ss_pred ccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCCC
Confidence 99999753 11000000 010000 00 0 0 00 00
Q ss_pred HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCC--CcEEEEEeCCCCCCCCC--
Q psy4818 630 FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK--NPLLLRVEQDAGHGQGT-- 705 (734)
Q Consensus 630 ~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~gH~~~~-- 705 (734)
-+++++.||+.++.+- .+++| +|++||.+|.+ +..++.+++++|++. + ++..+++.|. +|+...
T Consensus 269 d~yw~~~Sp~~~~~~~--~I~~P-vLiv~G~~D~~-~~~~~~~~~~aL~~~-------g~~~~~~lvigp~-~H~~~~~~ 336 (652)
T 2b9v_A 269 DAFWQGQALDKILAQR--KPTVP-MLWEQGLWDQE-DMWGAIHAWQALKDA-------DVKAPNTLVMGPW-RHSGVNYN 336 (652)
T ss_dssp SHHHHTTCHHHHHHHH--CCCSC-EEEEEETTCSS-CSSHHHHHHHHHHHT-------TCSSCEEEEEESC-CTTGGGSC
T ss_pred ChHHhcCChhhhhhcC--CCCCC-EEEEeecCCcc-ccccHHHHHHHHHhc-------CCCCCCEEEECCC-CCCCcccc
Confidence 0224556776544310 05667 99999999998 778999999999998 7 8899999886 797521
Q ss_pred ---c-------hHHhHHHHHHHHHHHHHHcCCC
Q psy4818 706 ---P-------LMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 706 ---~-------~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
. ..........+++||+++|+..
T Consensus 337 ~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 337 GSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp CSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cccCCccccccccchhhhhhHHHHHHHHHhCCC
Confidence 0 1111223566899999999865
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=203.56 Aligned_cols=237 Identities=16% Similarity=0.085 Sum_probs=164.7
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEecccc--------------CCCCCcEEEEecCCCCCcCCc---cccHHHHHHHH-h
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGAL--------------RNRRNPVIIYGYGGYGVSVLP---TFSISRCMFLR-H 516 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~--------------~~~~~P~vv~~hGg~~~~~~~---~~~~~~~~~l~-~ 516 (734)
..+..+.+.+.+ +..+++.++.|++.. ..++.|+||++|||....... .|.. +...|+ +
T Consensus 68 ~~v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~-~~~~la~~ 144 (351)
T 2zsh_A 68 DGVFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDT-LCRRLVGL 144 (351)
T ss_dssp TTEEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHH-HHHHHHHH
T ss_pred CCceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHH-HHHHHHHH
Confidence 345677888865 556899999998642 246789999999975433221 1433 334555 6
Q ss_pred cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC----CCCCC-cEEEEEcChHHHHHHHHHhcCCC
Q psy4818 517 FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK----YTKPK-YITIMGGSNGGLLVGACLNQRPE 591 (734)
Q Consensus 517 ~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-ri~i~G~S~GG~~~~~~~~~~p~ 591 (734)
+||+|+.+||||+++.. ....++|+.++++||.++. .+|++ |++|+|+|+||++++.++.++|+
T Consensus 145 ~g~~vv~~d~rg~~~~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~ 213 (351)
T 2zsh_A 145 CKCVVVSVNYRRAPENP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE 213 (351)
T ss_dssp HTSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHT
T ss_pred cCCEEEEecCCCCCCCC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhc
Confidence 79999999999977643 1235789999999998764 47999 99999999999999999998888
Q ss_pred ---ceeEEEEcCCcchhccccccccCcccccccCCCC-CHHHHHH-HHh------------CCcc----CCCCCCCCCcc
Q psy4818 592 ---LYGAALILVGALDMLRFNKFTIAYYSESEFGSPN-NKTHFHN-LLS------------YSPL----HNIKVPPNNTQ 650 (734)
Q Consensus 592 ---~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~------------~sp~----~~~~~p~~~~~ 650 (734)
.++++|+.+|+++....... .....+.+. ....... +.. .+|+ .++.. +.
T Consensus 214 ~~~~v~~~vl~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~ 284 (351)
T 2zsh_A 214 SGIDVLGNILLNPMFGGNERTES-----EKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEG----VS 284 (351)
T ss_dssp TTCCCCEEEEESCCCCCSSCCHH-----HHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTT----CC
T ss_pred cCCCeeEEEEECCccCCCcCChh-----hhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhh----CC
Confidence 89999999998875432110 000011110 1111111 111 1222 12222 46
Q ss_pred CCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc--hHHhHHHHHHHHHHHHH
Q psy4818 651 YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP--LMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 651 ~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~ 723 (734)
+||+||++|++|..++ ++.+++++|++. +.++++++++++||++... .....+....+.+||.+
T Consensus 285 ~pP~Lii~G~~D~~~~--~~~~~~~~l~~~-------g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 285 FPKSLVVVAGLDLIRD--WQLAYAEGLKKA-------GQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp CCEEEEEEETTSTTHH--HHHHHHHHHHHT-------TCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEcCCCcchH--HHHHHHHHHHHc-------CCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 7679999999999875 778899999988 8899999999999988651 12235677788899864
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-22 Score=204.44 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=162.0
Q ss_pred eEEEEEEEc-CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCC------
Q psy4818 458 QTKQVYFRS-KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGG------ 530 (734)
Q Consensus 458 ~~~~~~~~s-~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~------ 530 (734)
..+++.+.+ .+|.++++.++.|+++.+.+++|+||++||+.+....+........+++++|++|+++|.++.|
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~ 93 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNE 93 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCC
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCcccccccccc
Confidence 455666665 4788999999999987667889999999998655432211111345666779999999976533
Q ss_pred -----CCCchhhhccccc--cCCCchhH-HHH-HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 531 -----ELGEDWHNAGRLL--KKQNCFDD-FQA-AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 531 -----~~g~~~~~~~~~~--~~~~~~~D-~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
+.|..|+...... .....+.+ +.. ++.++.+. +..++|++|+|+|+||++++.++.++|++|+++++.+|
T Consensus 94 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~ 172 (280)
T 3ls2_A 94 DSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQH-FPVTSTKAISGHSMGGHGALMIALKNPQDYVSASAFSP 172 (280)
T ss_dssp SCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHH-SSEEEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESC
T ss_pred cccccccCCccccccccccccccccHHHHHHHHHHHHHHhh-CCCCCCeEEEEECHHHHHHHHHHHhCchhheEEEEecC
Confidence 2233333322111 01112233 222 33444333 33358999999999999999999999999999999999
Q ss_pred cchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCcc---CCcEEEEecCCCCCCCChH-HHHHHHHH
Q psy4818 602 ALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQ---YPATLVLTGDHDDRVPPLH-SYKFIATL 677 (734)
Q Consensus 602 ~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~---~P~~Li~~g~~D~~v~~~~-~~~~~~~L 677 (734)
++++....... ..+...+|.. .+ .+..++|...+.. .. .+|+||+||+.|..|+... +.+++++|
T Consensus 173 ~~~~~~~~~~~--~~~~~~~g~~--~~---~~~~~~~~~~~~~----~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l 241 (280)
T 3ls2_A 173 IVNPINCPWGV--KAFTGYLGAD--KT---TWAQYDSCKLMAK----AEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVA 241 (280)
T ss_dssp CSCGGGSHHHH--HHHHHHHCSC--GG---GTGGGCHHHHHHT----CCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHH
T ss_pred ccCcccCcchh--hHHHhhcCch--HH---HHHhcCHHHHHHh----ccccCCCcEEEEEeCCCcccCCchhHHHHHHHH
Confidence 88764321000 0001112321 11 1224445443333 21 2349999999999999854 89999999
Q ss_pred HhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
++. |.+++++++|+++|.+.. ......+.++|+.++|.
T Consensus 242 ~~~-------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 242 KQK-------DYPLTLEMQTGYDHSYFF----ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHH-------TCCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHh-------CCCceEEEeCCCCCchhh----HHHHHHHHHHHHHHHhc
Confidence 999 999999999999998732 23556678899999875
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-21 Score=205.70 Aligned_cols=223 Identities=17% Similarity=0.093 Sum_probs=158.4
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchh
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFD 550 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~ 550 (734)
.+.+.++.|++ .++.|+||++||+.+.... ..+..|+++||+|+++|+||.++.... .....++
T Consensus 144 ~l~~~l~~P~~---~~~~P~Vv~~hG~~~~~~~-----~~a~~La~~Gy~V~a~D~rG~g~~~~~--------~~~~~~~ 207 (422)
T 3k2i_A 144 RVRATLFLPPG---PGPFPGIIDIFGIGGGLLE-----YRASLLAGHGFATLALAYYNFEDLPNN--------MDNISLE 207 (422)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCTTCSCCC-----HHHHHHHTTTCEEEEEECSSSTTSCSS--------CSCEETH
T ss_pred cEEEEEEcCCC---CCCcCEEEEEcCCCcchhH-----HHHHHHHhCCCEEEEEccCCCCCCCCC--------cccCCHH
Confidence 58999999986 4678999999998654221 235778888999999999997655422 2224588
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc----ccccCc-----------
Q psy4818 551 DFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN----KFTIAY----------- 615 (734)
Q Consensus 551 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~----~~~~~~----------- 615 (734)
|+.+++++|.++..+++++|+|+|+|+||++++.++.++|+ ++++|+.+|........ ......
T Consensus 208 d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (422)
T 3k2i_A 208 YFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVA 286 (422)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccC
Confidence 99999999999888899999999999999999999999998 79999988876322110 000000
Q ss_pred -----ccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHH-HHHHHHHHhhhCCCCCCCC
Q psy4818 616 -----YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS-YKFIATLQEKIGSLPYQKN 689 (734)
Q Consensus 616 -----~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~-~~~~~~L~~~~~~~~~~~~ 689 (734)
.+...+..+... ...+....+.. ++.| +|++||++|..+|..+. ..+.++|++. ++
T Consensus 287 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----i~~P-~Lii~G~~D~~vp~~~~~~~~~~~l~~~-------g~ 348 (422)
T 3k2i_A 287 FSGLVDIVDIRNALVGG------YKNPSMIPIEK----AQGP-ILLIVGQDDHNWRSELYAQTVSERLQAH-------GK 348 (422)
T ss_dssp TTSCEECTTCBCCCTTG------GGSTTBCCGGG----CCSC-EEEEEETTCSSSCHHHHHHHHHHHHHHT-------TC
T ss_pred cchhHHHHHHHhhhhhc------ccccccccHHH----CCCC-EEEEEeCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 000011111110 01112222332 5666 99999999999999866 5888899988 77
Q ss_pred c-EEEEEeCCCCCCCCCc--------------------------hHHhHHHHHHHHHHHHHHcCCC
Q psy4818 690 P-LLLRVEQDAGHGQGTP--------------------------LMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 690 ~-~~~~~~~~~gH~~~~~--------------------------~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
+ +++++|+++||.+..+ .....+.+.++++||.++|+..
T Consensus 349 ~~~~l~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 349 EKPQIICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp CCCEEEEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCEEEEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7 8999999999998321 1224678889999999999754
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=200.19 Aligned_cols=240 Identities=15% Similarity=0.106 Sum_probs=167.7
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHHh-cCeEEEEEecccCCCC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRH-FNGIYAIPNIRGGGEL 532 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~ 532 (734)
.....+.+.+++.+| +|++.++.|++. .++.|+||++|||.... ....|.. +...|++ .||.|+.+|+||.+++
T Consensus 44 ~~~~~~~~~i~~~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~-~~~~la~~~g~~v~~~d~rg~~~~ 119 (310)
T 2hm7_A 44 PVAEVREFDMDLPGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDP-VCRVLAKDGRAVVFSVDYRLAPEH 119 (310)
T ss_dssp CCSEEEEEEEEETTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHH-HHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CcceEEEEEeccCCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHH-HHHHHHHhcCCEEEEeCCCCCCCC
Confidence 455788999998888 899999999863 45789999999975332 2333443 4455555 4999999999997764
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchh
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDM 605 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~ 605 (734)
+ .....+|+.++++||.++. .+|+++++|+|+|+||++++.++.++|+ .++++|+.+|+.++
T Consensus 120 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~ 188 (310)
T 2hm7_A 120 K-----------FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGY 188 (310)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCC
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCC
Confidence 3 1224689999999998864 3688999999999999999999987776 68999999998876
Q ss_pred ccccccccCcccccccC-CC-CCHHHHHHH-------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHH
Q psy4818 606 LRFNKFTIAYYSESEFG-SP-NNKTHFHNL-------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670 (734)
Q Consensus 606 ~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~-------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~ 670 (734)
...... ..+ ..+. .+ ........+ ...+|+..... ...||+||++|++|..+ .++
T Consensus 189 ~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l----~~~~P~lii~G~~D~~~--~~~ 258 (310)
T 2hm7_A 189 DPAHPP---ASI-EENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDL----SGLPPAYIATAQYDPLR--DVG 258 (310)
T ss_dssp CTTSCC---HHH-HHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCC----TTCCCEEEEEEEECTTH--HHH
T ss_pred CcccCC---cch-hhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccc----cCCCCEEEEEecCCCch--HHH
Confidence 511100 000 0000 00 011111110 02244432221 23346999999999987 688
Q ss_pred HHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHcC
Q psy4818 671 YKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 671 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 726 (734)
..++++|++. |.+++++++++++|++... .....+....+.+||.++|+
T Consensus 259 ~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 259 KLYAEALNKA-------GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHHHHHHT-------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHC-------CCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 9999999998 8899999999999987531 12235677789999998874
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-22 Score=202.78 Aligned_cols=246 Identities=15% Similarity=0.066 Sum_probs=163.0
Q ss_pred eEEEEEEEc-CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCC-----
Q psy4818 458 QTKQVYFRS-KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGE----- 531 (734)
Q Consensus 458 ~~~~~~~~s-~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~----- 531 (734)
..+++.+.+ .+|..+++.++.|+++...++.|+||++||+.+....+........+++++|++|+++|.|+.|.
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~~ 95 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVADD 95 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCCC
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCcccccccCcc
Confidence 456666655 57889999999999876678899999999986654322111113456677799999999876432
Q ss_pred ------CCchhhhccccc-c-CCCchhHH-H-HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 532 ------LGEDWHNAGRLL-K-KQNCFDDF-Q-AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 532 ------~g~~~~~~~~~~-~-~~~~~~D~-~-~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.|..|+...... + ....+.+. . ..+.++.+...+ ++|++|+|+|+||++++.++.++|++|+++|+.+|
T Consensus 96 ~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~ 174 (280)
T 3i6y_A 96 EGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSP 174 (280)
T ss_dssp SSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESC
T ss_pred cccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeCC
Confidence 122222221110 0 11122332 2 344455444333 78999999999999999999999999999999999
Q ss_pred cchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCcc-CCcEEEEecCCCCCCCChH-HHHHHHHHHh
Q psy4818 602 ALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQ-YPATLVLTGDHDDRVPPLH-SYKFIATLQE 679 (734)
Q Consensus 602 ~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~-~P~~Li~~g~~D~~v~~~~-~~~~~~~L~~ 679 (734)
++++...... ...+...+|.. .+ .+...+|...+.. .+ .+|+||+||+.|..|+..+ +.+++++|++
T Consensus 175 ~~~~~~~~~~--~~~~~~~~~~~--~~---~~~~~~~~~~~~~----~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~ 243 (280)
T 3i6y_A 175 INNPVNCPWG--QKAFTAYLGKD--TD---TWREYDASLLMRA----AKQYVPALVDQGEADNFLAEQLKPEVLEAAASS 243 (280)
T ss_dssp CCCGGGSHHH--HHHHHHHHCSC--GG---GTGGGCHHHHHHH----CSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHH
T ss_pred ccccccCchH--HHHHHHhcCCc--hH---HHHhcCHHHHHHh----cCCCccEEEEEeCCCccccchhhHHHHHHHHHH
Confidence 8875432100 00011112221 11 1224455444433 22 2349999999999998755 8999999999
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
. |.+++++++|+++|.+. ...+...+.++|+.++|+
T Consensus 244 ~-------g~~~~~~~~~g~~H~~~----~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 244 N-------NYPLELRSHEGYDHSYY----FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp T-------TCCEEEEEETTCCSSHH----HHHHHHHHHHHHHHHHHT
T ss_pred c-------CCCceEEEeCCCCccHH----HHHHhHHHHHHHHHhhcc
Confidence 8 99999999999999873 224566778999999885
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=200.47 Aligned_cols=237 Identities=14% Similarity=0.116 Sum_probs=167.6
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCC-cCCccccHHHHHHHHh-cCeEEEEEecccCCC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRH-FNGIYAIPNIRGGGE 531 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~ 531 (734)
+..+..+.+.+++.+| .|++.+|.|++ .++.|+||++|||... .....|... ...|++ .||.|+.+||||.++
T Consensus 60 ~~~~~~~~~~i~~~~~-~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~-~~~La~~~g~~Vv~~Dyrg~~~ 134 (323)
T 3ain_A 60 EEVGKIEDITIPGSET-NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPL-CRAITNSCQCVTISVDYRLAPE 134 (323)
T ss_dssp CCCSEEEEEEEECSSS-EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHH-HHHHHHHHTSEEEEECCCCTTT
T ss_pred CCccEEEEEEecCCCC-eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHH-HHHHHHhcCCEEEEecCCCCCC
Confidence 3456789999998887 89999999976 4678999999997532 233344443 344553 499999999999776
Q ss_pred CCchhhhccccccCCCchhHHHHHHHHHHHcCC-C-CCCcEEEEEcChHHHHHHHHHhcCCCce---eEEEEcCCcchhc
Q psy4818 532 LGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY-T-KPKYITIMGGSNGGLLVGACLNQRPELY---GAALILVGALDML 606 (734)
Q Consensus 532 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~-~-d~~ri~i~G~S~GG~~~~~~~~~~p~~~---~a~v~~~~~~d~~ 606 (734)
.. ....++|+.++++|+.++.. . |++||+|+|+|+||++++.++.++|+.. +++|+.+|+++..
T Consensus 135 ~~-----------~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~ 203 (323)
T 3ain_A 135 NK-----------FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFD 203 (323)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCC
T ss_pred CC-----------CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCC
Confidence 42 12347899999999987631 1 8899999999999999999998887765 8999999988754
Q ss_pred cccccccCccccccc--CCCCCHHHHHHH-------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHH
Q psy4818 607 RFNKFTIAYYSESEF--GSPNNKTHFHNL-------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSY 671 (734)
Q Consensus 607 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~-------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~ 671 (734)
..... + .++ +.....+....+ ...+|+.. .. ...||+||++|++|..+ .++.
T Consensus 204 ~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l----~~l~P~lii~G~~D~l~--~~~~ 270 (323)
T 3ain_A 204 LITKS-----L-YDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILA-DL----NDLPPALIITAEHDPLR--DQGE 270 (323)
T ss_dssp SCCHH-----H-HHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGS-CC----TTCCCEEEEEETTCTTH--HHHH
T ss_pred CCCcc-----H-HHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccC-cc----cCCCHHHEEECCCCccH--HHHH
Confidence 22100 0 000 000011111100 12345443 21 23456999999999887 5889
Q ss_pred HHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHcC
Q psy4818 672 KFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 672 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 726 (734)
.++++|++. |++++++++++++|++... .....+....+.+||.++|+
T Consensus 271 ~~a~~l~~a-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 271 AYANKLLQS-------GVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HHHHHHHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-------CCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 999999998 8999999999999998641 12235677788999998875
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=201.31 Aligned_cols=241 Identities=16% Similarity=0.086 Sum_probs=168.3
Q ss_pred CCceEEEEEEEcCCCc-EEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 455 TLFQTKQVYFRSKDGT-RVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~-~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
..+..+.+.+++.||. .|++.++.|++. .++.|+||++|||.... ....|......+..+.||.|+.+||||.++.
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~--~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~ 124 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPET 124 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTS
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC--CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCC
Confidence 4567899999999997 899999999752 46789999999986322 2223443333444435999999999997764
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchh
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDM 605 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~ 605 (734)
. .....+|+.++++||.+. ..+|++||+|+|+|+||++++.++.++|+ .++++|+.+|+++.
T Consensus 125 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 193 (323)
T 1lzl_A 125 T-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDD 193 (323)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCT
T ss_pred C-----------CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccCC
Confidence 2 123467999999999874 23688999999999999999999887665 48999999999876
Q ss_pred ccccccccCcccccccC-C-CCCHHHH----HHHH--------------hCCccCCCCCCCCCccCCcEEEEecCCCCCC
Q psy4818 606 LRFNKFTIAYYSESEFG-S-PNNKTHF----HNLL--------------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRV 665 (734)
Q Consensus 606 ~~~~~~~~~~~~~~~~g-~-~~~~~~~----~~~~--------------~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v 665 (734)
...... + .++. . ....... ..+. ..+|+..... ...||+||++|++|..+
T Consensus 194 ~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~----~~~~P~li~~G~~D~~~ 263 (323)
T 1lzl_A 194 RLETVS-----M-TNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDL----TGLPPTYLSTMELDPLR 263 (323)
T ss_dssp TCCSHH-----H-HHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCC----TTCCCEEEEEETTCTTH
T ss_pred CcCchh-----H-HHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccCccc----CCCChhheEECCcCCch
Confidence 532110 0 0000 0 0011100 1111 1233332121 23356999999999987
Q ss_pred CChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc--hHHhHHHHHHHHHHHHHHcCC
Q psy4818 666 PPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP--LMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 666 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~~l~~ 727 (734)
.++.+++++|++. |.+++++++++++|++... .....+....+.+||.++++.
T Consensus 264 --~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 318 (323)
T 1lzl_A 264 --DEGIEYALRLLQA-------GVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRS 318 (323)
T ss_dssp --HHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHHHc-------CCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999998 8999999999999987421 122356778899999999864
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=204.78 Aligned_cols=247 Identities=17% Similarity=0.136 Sum_probs=157.8
Q ss_pred EEEEEEEc-CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec--ccCCCCCch
Q psy4818 459 TKQVYFRS-KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI--RGGGELGED 535 (734)
Q Consensus 459 ~~~~~~~s-~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--rG~~~~g~~ 535 (734)
.+.+.+.+ .+|..+++.++.|++.. .++.|+||++||+.+....+.....+..+++++||+|+++|+ ||.++.|..
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~ 94 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGED 94 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC----
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCcccccccc
Confidence 44455544 57889999999998753 368999999999866543221111124566778999999999 887765432
Q ss_pred ----------hhhccccc-c--CCCchhHHH-HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 536 ----------WHNAGRLL-K--KQNCFDDFQ-AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 536 ----------~~~~~~~~-~--~~~~~~D~~-~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
|+...... + .....+++. .+++++.++.-+|++||+|+|+|+||++++.++.++|++|+++|+.+|
T Consensus 95 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~ 174 (282)
T 3fcx_A 95 ESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAP 174 (282)
T ss_dssp ----CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESC
T ss_pred ccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCC
Confidence 22211100 0 001123333 344444434448899999999999999999999999999999999999
Q ss_pred cchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH--HHHHHHHHHh
Q psy4818 602 ALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH--SYKFIATLQE 679 (734)
Q Consensus 602 ~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~--~~~~~~~L~~ 679 (734)
+.+........ ..+...+|... ..+..++|...+.... +...| +||+||+.|..|+..+ +.+++++|++
T Consensus 175 ~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~p-~li~~G~~D~~v~~~~~~~~~~~~~l~~ 245 (282)
T 3fcx_A 175 ICNPVLCPWGK--KAFSGYLGTDQ-----SKWKAYDATHLVKSYP-GSQLD-ILIDQGKDDQFLLDGQLLPDNFIAACTE 245 (282)
T ss_dssp CCCGGGSHHHH--HHHHHHHC--------CCGGGGCHHHHHTTCC----CC-EEEEEETTCHHHHTTSSCHHHHHHHHHH
T ss_pred ccCcccCchhH--HHHHHhcCCch-----hhhhhcCHHHHHHhcc-cCCCc-EEEEcCCCCcccccchhhHHHHHHHHHH
Confidence 88754321000 00111122211 0112334433222210 03444 9999999999997665 6699999999
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
. |.+++++++++++|.+.. ......+.+.|+.++|.
T Consensus 246 ~-------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 246 K-------KIPVVFRLQEDYDHSYYF----IATFITDHIRHHAKYLN 281 (282)
T ss_dssp T-------TCCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHTT
T ss_pred c-------CCceEEEECCCCCcCHHH----HHhhhHHHHHHHHHhhc
Confidence 8 899999999999998742 23455667899998875
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=186.82 Aligned_cols=212 Identities=16% Similarity=0.116 Sum_probs=159.2
Q ss_pred eEE--EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC---CccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 458 QTK--QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV---LPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 458 ~~~--~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~---~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
..| ++.+++.+| +|.++++.|++ ++.|+||++||..+... ...| ..+...|+++||.|+++|+||.|..
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~~~-~~~~~~l~~~G~~v~~~d~~g~G~s 93 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE----KSAPIAIILHPHPQFGGTMNNQIV-YQLFYLFQKRGFTTLRFNFRSIGRS 93 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS----TTCCEEEEECCCGGGTCCTTSHHH-HHHHHHHHHTTCEEEEECCTTSTTC
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC----CCCCEEEEECCCcccCCCccchHH-HHHHHHHHHCCCEEEEECCCCCCCC
Confidence 455 899999888 89999888754 56799999999643221 1122 2355667778999999999996644
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 612 (734)
...+. .....++|+.+++++|.+++ .++++++++|+|+||++++.++.++|+ ++++|+.+|..+...
T Consensus 94 ~~~~~------~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~----- 160 (249)
T 2i3d_A 94 QGEFD------HGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD----- 160 (249)
T ss_dssp CSCCC------SSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC-----
T ss_pred CCCCC------CccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh-----
Confidence 32211 12234589999999998875 478899999999999999999999998 899999998775321
Q ss_pred cCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 613 IAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 613 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
+..+.. ++.| +|+++|++|..+++.++.++++++... .+..++
T Consensus 161 --------------------------~~~~~~----~~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~------~~~~~~ 203 (249)
T 2i3d_A 161 --------------------------FSFLAP----CPSS-GLIINGDADKVAPEKDVNGLVEKLKTQ------KGILIT 203 (249)
T ss_dssp --------------------------CTTCTT----CCSC-EEEEEETTCSSSCHHHHHHHHHHHTTS------TTCCEE
T ss_pred --------------------------hhhhcc----cCCC-EEEEEcCCCCCCCHHHHHHHHHHHhhc------cCCcee
Confidence 011222 4556 999999999999999999999998752 166889
Q ss_pred EEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 693 LRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 693 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
+++++++||.+.. . ..+....+.+||.+++...
T Consensus 204 ~~~~~g~~H~~~~-~--~~~~~~~i~~fl~~~l~~~ 236 (249)
T 2i3d_A 204 HRTLPGANHFFNG-K--VDELMGECEDYLDRRLNGE 236 (249)
T ss_dssp EEEETTCCTTCTT-C--HHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCccccc-C--HHHHHHHHHHHHHHhcCCC
Confidence 9999999999873 2 2466777899999998654
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=205.30 Aligned_cols=223 Identities=17% Similarity=0.148 Sum_probs=157.1
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchh
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFD 550 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~ 550 (734)
.+.++++.|++ .++.|+||++||+.+.... ..+.+|+++||+|+++|+||.++.+... ....++
T Consensus 160 ~l~~~l~~P~~---~~~~P~Vv~lhG~~~~~~~-----~~a~~La~~Gy~Vla~D~rG~~~~~~~~--------~~~~~~ 223 (446)
T 3hlk_A 160 RVRGTLFLPPE---PGPFPGIVDMFGTGGGLLE-----YRASLLAGKGFAVMALAYYNYEDLPKTM--------ETLHLE 223 (446)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCSSCSCCC-----HHHHHHHTTTCEEEEECCSSSTTSCSCC--------SEEEHH
T ss_pred eEEEEEEeCCC---CCCCCEEEEECCCCcchhh-----HHHHHHHhCCCEEEEeccCCCCCCCcch--------hhCCHH
Confidence 59999999976 4678999999998654322 2357788889999999999976654221 223588
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc----ccccC------------
Q psy4818 551 DFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN----KFTIA------------ 614 (734)
Q Consensus 551 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~----~~~~~------------ 614 (734)
|+.+++++|.++..+|+++|+|+|+|+||++++.++.++|+ ++++|+.+|........ .....
T Consensus 224 d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
T 3hlk_A 224 YFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVT 302 (446)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhccccc
Confidence 99999999999988899999999999999999999999998 79999888865322110 00000
Q ss_pred ----cccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHH-HHHHHHHHhhhCCCCCCCC
Q psy4818 615 ----YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS-YKFIATLQEKIGSLPYQKN 689 (734)
Q Consensus 615 ----~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~-~~~~~~L~~~~~~~~~~~~ 689 (734)
..+...+..+..... .....+ +.. ++.| +||++|++|..+|+.+. ..++++|++. |.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~----i~~P-vLii~G~~D~~vp~~~~~~~~~~~l~~~-------g~ 364 (446)
T 3hlk_A 303 KDGYADIVDVLNSPLEGPD---QKSFIP---VER----AEST-FLFLVGQDDHNWKSEFYANEACKRLQAH-------GR 364 (446)
T ss_dssp SSSCEECTTCBCCTTSGGG---GGGBCC---GGG----CCSE-EEEEEETTCCSSCHHHHHHHHHHHHHHT-------TC
T ss_pred cchHHHHHHHHhchhhccc---cccccC---HHH----CCCC-EEEEEeCCCCCcChHHHHHHHHHHHHHc-------CC
Confidence 000011111111100 011112 222 5555 99999999999999655 6899999998 77
Q ss_pred c-EEEEEeCCCCCCCCC--------------------------chHHhHHHHHHHHHHHHHHcCCC
Q psy4818 690 P-LLLRVEQDAGHGQGT--------------------------PLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 690 ~-~~~~~~~~~gH~~~~--------------------------~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
+ +++++|+++||.+.. ....+.+.+.++++||.++|+..
T Consensus 365 ~~~~l~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 365 RKPQIICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp CCCEEEEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCcEEEEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8 899999999999831 11123578889999999999753
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=204.24 Aligned_cols=240 Identities=19% Similarity=0.190 Sum_probs=167.8
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
..+..+++.+.+.||.+|+++++.|++ .++.|+||++||+.+....+. . ...++ ++||.|+++|+||.|+.+.
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~~~~~--~-~~~~~-~~G~~v~~~D~rG~g~s~~ 150 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNSGDWN--D-KLNYV-AAGFTVVAMDVRGQGGQSQ 150 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCSCCSG--G-GHHHH-TTTCEEEEECCTTSSSSCC
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCCCChh--h-hhHHH-hCCcEEEEEcCCCCCCCCC
Confidence 456789999999999999999999986 467899999999876654433 2 23444 5699999999999886654
Q ss_pred hhhhc------cccccC----------CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEE
Q psy4818 535 DWHNA------GRLLKK----------QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI 598 (734)
Q Consensus 535 ~~~~~------~~~~~~----------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~ 598 (734)
..... +....+ ...++|+.++++++.....+|++||+|+|+|+||++++.++.++|+ ++++|+
T Consensus 151 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl 229 (346)
T 3fcy_A 151 DVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVS 229 (346)
T ss_dssp CCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEE
T ss_pred CCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEE
Confidence 32211 000000 0125899999999998888899999999999999999999999998 899999
Q ss_pred cCCcchh-ccccccccC-ccc--cc---ccCCC---CCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCCh
Q psy4818 599 LVGALDM-LRFNKFTIA-YYS--ES---EFGSP---NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL 668 (734)
Q Consensus 599 ~~~~~d~-~~~~~~~~~-~~~--~~---~~g~~---~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~ 668 (734)
.+|+++. ......... ..+ .. .+..| ...+.+..+..+++...+.. ++.| +|+++|+.|..|++.
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----i~~P-~lii~G~~D~~~~~~ 304 (346)
T 3fcy_A 230 EYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKR----IKGD-VLMCVGLMDQVCPPS 304 (346)
T ss_dssp ESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGG----CCSE-EEEEEETTCSSSCHH
T ss_pred CCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHh----cCCC-EEEEeeCCCCcCCHH
Confidence 9997542 211111100 000 00 01111 12233344444455444444 6666 999999999999998
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 669 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 669 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
++.++++++. .++++++++++||.+.. +....+.+||.+
T Consensus 305 ~~~~~~~~~~----------~~~~~~~~~~~gH~~~~------~~~~~i~~fl~~ 343 (346)
T 3fcy_A 305 TVFAAYNNIQ----------SKKDIKVYPDYGHEPMR------GFGDLAMQFMLE 343 (346)
T ss_dssp HHHHHHTTCC----------SSEEEEEETTCCSSCCT------THHHHHHHHHHT
T ss_pred HHHHHHHhcC----------CCcEEEEeCCCCCcCHH------HHHHHHHHHHHH
Confidence 8877776552 26789999999999872 334567889875
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=197.75 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=163.5
Q ss_pred eEEEEEEEc-CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc--
Q psy4818 458 QTKQVYFRS-KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE-- 534 (734)
Q Consensus 458 ~~~~~~~~s-~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~-- 534 (734)
..+.+.+.+ .+|.++++.++.|++.. .++.|+||++||+.+....+.....+..++++.||+|+++|+||.|....
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~~ 92 (278)
T 3e4d_A 14 MQGVFSHQSETLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTHANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPDE 92 (278)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCC
T ss_pred cEEEEEEeccccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEecCCcccCcccccc
Confidence 455566644 57889999999998764 57899999999986654322111113456666799999999998654321
Q ss_pred ----------hhhhccccc--cCCCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 535 ----------DWHNAGRLL--KKQNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 535 ----------~~~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
.|+...... .....+.+++ .+++++.+...+|++|++|+|+|+||++++.++.++|++|+++|+.+
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 172 (278)
T 3e4d_A 93 LTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAFA 172 (278)
T ss_dssp TTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEES
T ss_pred cccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEeC
Confidence 111111000 0111233333 35666666655788999999999999999999999999999999999
Q ss_pred CcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH-HHHHHHHHHh
Q psy4818 601 GALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH-SYKFIATLQE 679 (734)
Q Consensus 601 ~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~-~~~~~~~L~~ 679 (734)
|++++....... ..+...+|.. .+ .+..++|...+... ...||+||+||+.|..|+... +..++++|++
T Consensus 173 ~~~~~~~~~~~~--~~~~~~~~~~--~~---~~~~~~~~~~~~~~---~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 242 (278)
T 3e4d_A 173 PIVAPSSADWSE--PALEKYLGAD--RA---AWRRYDACSLVEDG---ARFPEFLIDQGKADSFLEKGLRPWLFEEAIKG 242 (278)
T ss_dssp CCSCGGGCTTTH--HHHHHHHCSC--GG---GGGGGCHHHHHHTT---CCCSEEEEEEETTCTTHHHHTCTHHHHHHHTT
T ss_pred CcccccCCccch--hhHHHhcCCc--HH---HHHhcChhhHhhcC---CCCCcEEEEecCCCcccccchhHHHHHHHHHH
Confidence 988764321000 0011112321 11 12244454443331 223459999999999998532 7889999988
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
. |.+++++++++++|.+.. ..+...+++.|+.++|+
T Consensus 243 ~-------g~~~~~~~~~g~~H~~~~----~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 243 T-------DIGLTLRMHDRYDHSYYF----ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp S-------SCEEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred c-------CCCceEEEeCCCCcCHHH----HHHHHHHHHHHHHHhcC
Confidence 8 899999999999998632 23556678899998875
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=204.27 Aligned_cols=245 Identities=16% Similarity=0.062 Sum_probs=167.2
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
..+..+.+.+++.||..+.++++.|++ .+.++.|+||++||+.+... .+...+...|+++||.|+++|+||.|....
T Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 140 (367)
T 2hdw_A 64 AKVEHRKVTFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAVKE--QSSGLYAQTMAERGFVTLAFDPSYTGESGG 140 (367)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCCTT--SHHHHHHHHHHHTTCEEEEECCTTSTTSCC
T ss_pred CCceeEEEEEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCcch--hhHHHHHHHHHHCCCEEEEECCCCcCCCCC
Confidence 345788999999999999999999987 33567899999999865433 233334566777899999999999765432
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc--
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT-- 612 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-- 612 (734)
.... ........+|+.+++++|.++..+|++|++++|+|+||.+++.++.++|+ ++++|+.+|+.. .......
T Consensus 141 ~~~~---~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-~~~~v~~~p~~~-~~~~~~~~~ 215 (367)
T 2hdw_A 141 QPRN---VASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKR-VKAVVTSTMYDM-TRVMSKGYN 215 (367)
T ss_dssp SSSS---CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCCH-HHHHHHTTT
T ss_pred cCcc---ccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCCC-ccEEEEeccccc-cHHHhhhhc
Confidence 2111 01112457899999999999888889999999999999999999999884 799998888632 1100000
Q ss_pred ---------------------------------cC---c---cc----ccc-------------cCCCCCHHHHHHHHhC
Q psy4818 613 ---------------------------------IA---Y---YS----ESE-------------FGSPNNKTHFHNLLSY 636 (734)
Q Consensus 613 ---------------------------------~~---~---~~----~~~-------------~g~~~~~~~~~~~~~~ 636 (734)
.. . .. ... +...........+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (367)
T 2hdw_A 216 DSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNM 295 (367)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTS
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCC
Confidence 00 0 00 000 0000011123344556
Q ss_pred CccCCCCCCCCCcc-CCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHH
Q psy4818 637 SPLHNIKVPPNNTQ-YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMT 715 (734)
Q Consensus 637 sp~~~~~~p~~~~~-~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 715 (734)
+|...+.. ++ .| +||++|++|. ++.++.+++++ . +.++++++++++||.+...... .....
T Consensus 296 ~~~~~~~~----i~~~P-vLii~G~~D~--~~~~~~~~~~~---~-------~~~~~~~~~~g~gH~~~~~~~~-~~~~~ 357 (367)
T 2hdw_A 296 PILTYIKE----ISPRP-ILLIHGERAH--SRYFSETAYAA---A-------AEPKELLIVPGASHVDLYDRLD-RIPFD 357 (367)
T ss_dssp CSCTTGGG----GTTSC-EEEEEETTCT--THHHHHHHHHH---S-------CSSEEEEEETTCCTTHHHHCTT-TSCHH
T ss_pred ChhHhHHh----hcCCc-eEEEecCCCC--CHHHHHHHHHh---C-------CCCeeEEEeCCCCeeeeecCch-hHHHH
Confidence 67666664 66 77 9999999998 77777776665 4 6789999999999974321111 11456
Q ss_pred HHHHHHHHHc
Q psy4818 716 DIYVFLMKSL 725 (734)
Q Consensus 716 ~~~~fl~~~l 725 (734)
.+.+||.++|
T Consensus 358 ~i~~fl~~~l 367 (367)
T 2hdw_A 358 RIAGFFDEHL 367 (367)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 7899999875
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=196.29 Aligned_cols=241 Identities=15% Similarity=0.138 Sum_probs=164.2
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCC-cCCccccHHHHHHHHhc-CeEEEEEecccCCCC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHF-NGIYAIPNIRGGGEL 532 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~~~~ 532 (734)
.....+.+.+++.+| .|++.++.|++ .++.|+||++|||... .....|.. +...|+++ ||.|+++|+||.|+.
T Consensus 44 ~~~~~~~~~i~~~~g-~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~v~~~d~rg~g~~ 118 (311)
T 2c7b_A 44 PIAETRDVHIPVSGG-SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDH-ICRRLSRLSDSVVVSVDYRLAPEY 118 (311)
T ss_dssp CCSEEEEEEEEETTE-EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHH-HHHHHHHHHTCEEEEECCCCTTTS
T ss_pred CcceEEEEEecCCCC-cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHH-HHHHHHHhcCCEEEEecCCCCCCC
Confidence 344788999998888 89999999975 3457999999998522 22223433 34555544 999999999997764
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchh
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDM 605 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~ 605 (734)
. .....+|+.+++++|.+.. .+|+++++|+|+|+||++++.++.++|+ .++++|+.+|++++
T Consensus 119 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 187 (311)
T 2c7b_A 119 K-----------FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNM 187 (311)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCC
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCC
Confidence 3 1224679999999998762 3688899999999999999999987765 58999999999884
Q ss_pred ccccccccCcccccccCC-CCCHHHHHHH-------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHH
Q psy4818 606 LRFNKFTIAYYSESEFGS-PNNKTHFHNL-------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSY 671 (734)
Q Consensus 606 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~-------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~ 671 (734)
......... .+ ..+.. +........+ ...+|+...- ...||+||++|++|..++ ++.
T Consensus 188 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l-----~~~~P~lii~G~~D~~~~--~~~ 258 (311)
T 2c7b_A 188 TGVPTASLV-EF-GVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADL-----GGLPPALVVTAEYDPLRD--EGE 258 (311)
T ss_dssp SSCCCHHHH-HH-HHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCC-----TTCCCEEEEEETTCTTHH--HHH
T ss_pred ccccccCCc-cH-HHhccCCCCHHHHHHHHHHhCCCCccccCcccCcccccc-----cCCCcceEEEcCCCCchH--HHH
Confidence 211100000 00 00000 0001111000 1234443211 223459999999999875 677
Q ss_pred HHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHcCC
Q psy4818 672 KFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 672 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 727 (734)
.++++|+.. +.+++++++++++|++... .....+....+.+||.++++.
T Consensus 259 ~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 310 (311)
T 2c7b_A 259 LYAYKMKAS-------GSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQP 310 (311)
T ss_dssp HHHHHHHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHC-------CCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhcC
Confidence 888999988 8999999999999988621 122356778899999998864
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=192.94 Aligned_cols=214 Identities=17% Similarity=0.173 Sum_probs=155.5
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
+.+.+++.||.++.++++.|++ ++.|+||++||..+... .|. .+...|+++||.|+++|+||.|..+..+...
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~----~~~p~vv~~hG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~ 76 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK----APAPVIVIAQDIFGVNA--FMR-ETVSWLVDQGYAAVCPDLYARQAPGTALDPQ 76 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS----CSEEEEEEECCTTBSCH--HHH-HHHHHHHHTTCEEEEECGGGGTSTTCBCCTT
T ss_pred ceEEEecCCCCeEEEEEECCCC----CCCCEEEEEcCCCCCCH--HHH-HHHHHHHhCCcEEEeccccccCCCccccccc
Confidence 3456778899999999998864 57899999999765543 232 3456677789999999999977654321110
Q ss_pred -----------cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 540 -----------GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 540 -----------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
..........+|+.+++++|.++..++ ++++++|+|+||.+++.++.++| ++++|+.+|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~--- 150 (236)
T 1zi8_A 77 DERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE--- 150 (236)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG---
T ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc---
Confidence 000011233678889999997765444 69999999999999999999988 7888887774321
Q ss_pred cccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCC
Q psy4818 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK 688 (734)
Q Consensus 609 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~ 688 (734)
++...+.. ++.| +|+++|++|..|++.++.++++.+++. +
T Consensus 151 ----------------------------~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~ 190 (236)
T 1zi8_A 151 ----------------------------KQLNKVPE----VKHP-ALFHMGGQDHFVPAPSRQLITEGFGAN-------P 190 (236)
T ss_dssp ----------------------------GCGGGGGG----CCSC-EEEEEETTCTTSCHHHHHHHHHHHTTC-------T
T ss_pred ----------------------------cchhhhhh----cCCC-EEEEecCCCCCCCHHHHHHHHHHHHhC-------C
Confidence 01112222 4555 999999999999999999999988765 4
Q ss_pred CcEEEEEeCCCCCCCCCch------HHhHHHHHHHHHHHHHHcCC
Q psy4818 689 NPLLLRVEQDAGHGQGTPL------MKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 689 ~~~~~~~~~~~gH~~~~~~------~~~~~~~~~~~~fl~~~l~~ 727 (734)
++++++++++||++.... ....+....+.+||.++|+.
T Consensus 191 -~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 191 -LLQVHWYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp -TEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred -CceEEEECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999876432 11245677889999998864
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=184.91 Aligned_cols=213 Identities=15% Similarity=0.103 Sum_probs=156.9
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
..+..+.+.+++ +|.++.++++.|++ +.|+||++||+.+....+.+. .+...|+++||.|+++|+||.| .
T Consensus 8 ~~~~~~~~~~~~-~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~g---~ 77 (223)
T 2o2g_A 8 HQPQEYAVSVSV-GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNR-YVAEVLQQAGLATLLIDLLTQE---E 77 (223)
T ss_dssp CCCCEEEEEEEE-TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHH-HHHHHHHHHTCEEEEECSSCHH---H
T ss_pred CCceeeEEEEec-CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccchH-HHHHHHHHCCCEEEEEcCCCcC---C
Confidence 345678888886 89999999998864 579999999987655543332 3456677779999999999843 2
Q ss_pred hhhhcccc---ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc
Q psy4818 535 DWHNAGRL---LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF 611 (734)
Q Consensus 535 ~~~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~ 611 (734)
........ .......+|+.++++++..+..+|+++++++|+|+||.+++.++.++|+.++++|+.+|..++..
T Consensus 78 s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~---- 153 (223)
T 2o2g_A 78 EEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP---- 153 (223)
T ss_dssp HHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGCT----
T ss_pred CCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcCH----
Confidence 22211110 01112257888899999988888999999999999999999999999999999999998764311
Q ss_pred ccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcE
Q psy4818 612 TIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPL 691 (734)
Q Consensus 612 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~ 691 (734)
..+.. ++.| +|+++|++|..++. + ..+.+++. +.++
T Consensus 154 ----------------------------~~~~~----~~~P-~l~i~g~~D~~~~~-~---~~~~~~~~-------~~~~ 189 (223)
T 2o2g_A 154 ----------------------------SALPH----VKAP-TLLIVGGYDLPVIA-M---NEDALEQL-------QTSK 189 (223)
T ss_dssp ----------------------------TTGGG----CCSC-EEEEEETTCHHHHH-H---HHHHHHHC-------CSSE
T ss_pred ----------------------------HHHhc----CCCC-EEEEEccccCCCCH-H---HHHHHHhh-------CCCe
Confidence 11111 4455 99999999998863 2 34455555 6678
Q ss_pred EEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 692 LLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
++++++++||.+..+.. ..+....+.+||.++|+
T Consensus 190 ~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 190 RLVIIPRASHLFEEPGA-LTAVAQLASEWFMHYLR 223 (223)
T ss_dssp EEEEETTCCTTCCSTTH-HHHHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCcccCChHH-HHHHHHHHHHHHHHhcC
Confidence 99999999999876433 24677788999999874
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=194.95 Aligned_cols=237 Identities=15% Similarity=0.085 Sum_probs=157.5
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
+.....+.+.+ +|..+ ++|++. ....|+||++|||.... ....|......++.+.||+|+++|||++++.
T Consensus 55 ~~~~~~~~~~~---~g~~~----~~p~~~--~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~ 125 (322)
T 3k6k_A 55 AEGVELTLTDL---GGVPC----IRQATD--GAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPEN 125 (322)
T ss_dssp CTTCEEEEEEE---TTEEE----EEEECT--TCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTS
T ss_pred CCCceEEEEEE---CCEeE----EecCCC--CCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCC
Confidence 34556666665 56444 567652 23344499999985322 2223333333444445999999999997754
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc----eeEEEEcCCcchhccc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL----YGAALILVGALDMLRF 608 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~----~~a~v~~~~~~d~~~~ 608 (734)
. ....++|+.++++||.++ .+|+++|+|+|+|+||++++.++.+.|+. ++++|+.+|++|+...
T Consensus 126 ~-----------~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~ 193 (322)
T 3k6k_A 126 P-----------FPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLS 193 (322)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCC
T ss_pred C-----------CchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccC
Confidence 3 223478999999999987 46899999999999999999999877664 8999999999986533
Q ss_pred cccccCcccccccCCCCCHHHHHHH------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHH
Q psy4818 609 NKFTIAYYSESEFGSPNNKTHFHNL------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIAT 676 (734)
Q Consensus 609 ~~~~~~~~~~~~~g~~~~~~~~~~~------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~ 676 (734)
....... .........+....+ ...+|+.... ...||+||+||++|.. ..++.+++++
T Consensus 194 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-----~~~pP~li~~G~~D~~--~~~~~~~~~~ 263 (322)
T 3k6k_A 194 RWSNSNL---ADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADL-----SGLPEMLIHVGSEEAL--LSDSTTLAER 263 (322)
T ss_dssp SHHHHHT---GGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCC-----TTCCCEEEEEESSCTT--HHHHHHHHHH
T ss_pred ccchhhc---cCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCcccccc-----cCCCcEEEEECCcCcc--HHHHHHHHHH
Confidence 2100000 000000011111111 1234544322 3446799999999976 4689999999
Q ss_pred HHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHcCCC
Q psy4818 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 677 L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
|+++ |+++++++|++++|++... .....+...++.+||.++|+..
T Consensus 264 l~~~-------g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3k6k_A 264 AGAA-------GVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISKL 311 (322)
T ss_dssp HHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHC-------CCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhcc
Confidence 9999 9999999999999987532 1223577888999999999754
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=195.20 Aligned_cols=235 Identities=14% Similarity=0.087 Sum_probs=164.1
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..+.+.+++ +|.++.++++.|+ +.|+||++||+.+... .|. .+...|+++||.|+++|+||.|+......
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~------~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~~G~g~s~~~~~ 74 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT------GMPGVLFVHGWGGSQH--HSL-VRAREAVGLGCICMTFDLRGHEGYASMRQ 74 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE------SEEEEEEECCTTCCTT--TTH-HHHHHHHTTTCEEECCCCTTSGGGGGGTT
T ss_pred ceeeEEecC-CCeEEEEEEecCC------CCcEEEEeCCCCCCcC--cHH-HHHHHHHHCCCEEEEeecCCCCCCCCCcc
Confidence 467778876 7889999999986 5799999999876543 233 34566777899999999999665433211
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccccc----
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI---- 613 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~---- 613 (734)
.. ......+|+.+++++|.++..+|+++|+|+|+|+||++++.++.++| .+++++.+|............
T Consensus 75 ~~----~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~~~~~ 148 (290)
T 3ksr_A 75 SV----TRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPKVSLN 148 (290)
T ss_dssp TC----BHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBHHHHH
T ss_pred cc----cHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhccccccc
Confidence 11 11233689999999999888888999999999999999999999988 577787788765332111000
Q ss_pred -CcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 614 -AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 614 -~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
...+...+..+..... .++...+.. ++.| +|+++|++|..|++.++..+++.++.. + +++
T Consensus 149 ~~~~~~~~~~~~~~~~~------~~~~~~~~~----~~~P-~lii~G~~D~~v~~~~~~~~~~~~~~~-------~-~~~ 209 (290)
T 3ksr_A 149 ADPDLMDYRRRALAPGD------NLALAACAQ----YKGD-VLLVEAENDVIVPHPVMRNYADAFTNA-------R-SLT 209 (290)
T ss_dssp HSTTHHHHTTSCCCGGG------CHHHHHHHH----CCSE-EEEEEETTCSSSCHHHHHHHHHHTTTS-------S-EEE
T ss_pred CChhhhhhhhhhhhhcc------ccHHHHHHh----cCCC-eEEEEecCCcccChHHHHHHHHHhccC-------C-Cce
Confidence 0000000011111000 011111222 4556 999999999999999999999988765 4 789
Q ss_pred EEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 693 LRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 693 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
+++++++||.+..... ..+....+.+||.++++..
T Consensus 210 ~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~~~~~~ 244 (290)
T 3ksr_A 210 SRVIAGADHALSVKEH-QQEYTRALIDWLTEMVVGR 244 (290)
T ss_dssp EEEETTCCTTCCSHHH-HHHHHHHHHHHHHHHHHTC
T ss_pred EEEcCCCCCCCCcchH-HHHHHHHHHHHHHHHhcCC
Confidence 9999999998865433 2567778899999998643
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=189.02 Aligned_cols=235 Identities=16% Similarity=0.167 Sum_probs=153.5
Q ss_pred EEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc
Q psy4818 462 VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 462 ~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
+.++ .||.+|.++++.|++. .++.|+||++||..+......|.. +...|+++||.|+++|+||.|.........
T Consensus 4 ~~~~-~~g~~l~~~~~~p~~~--~~~~p~vvl~HG~~~~~~~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~-- 77 (251)
T 2wtm_A 4 MYID-CDGIKLNAYLDMPKNN--PEKCPLCIIIHGFTGHSEERHIVA-VQETLNEIGVATLRADMYGHGKSDGKFEDH-- 77 (251)
T ss_dssp EEEE-ETTEEEEEEEECCTTC--CSSEEEEEEECCTTCCTTSHHHHH-HHHHHHHTTCEEEEECCTTSTTSSSCGGGC--
T ss_pred eEEe-cCCcEEEEEEEccCCC--CCCCCEEEEEcCCCcccccccHHH-HHHHHHHCCCEEEEecCCCCCCCCCccccC--
Confidence 4454 4889999999988752 246789999999766532333433 446677779999999999977543211110
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc-----------
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK----------- 610 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----------- 610 (734)
......+|+.+++++|.+...+ ++++++|||+||.+++.++.++|++++++|+.+|...+.....
T Consensus 78 --~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
T 2wtm_A 78 --TLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDP 153 (251)
T ss_dssp --CHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBT
T ss_pred --CHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCc
Confidence 0012256777888888654333 4899999999999999999999999999999998754321100
Q ss_pred cccCccccccc-CCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCC
Q psy4818 611 FTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN 689 (734)
Q Consensus 611 ~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~ 689 (734)
..... ....+ +.......+..+...++...+.. ++.| +|++||++|..||+..+.++++.+.
T Consensus 154 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~lii~G~~D~~v~~~~~~~~~~~~~----------- 216 (251)
T 2wtm_A 154 ENIPD-ELDAWDGRKLKGNYVRVAQTIRVEDFVDK----YTKP-VLIVHGDQDEAVPYEASVAFSKQYK----------- 216 (251)
T ss_dssp TBCCS-EEEETTTEEEETHHHHHHTTCCHHHHHHH----CCSC-EEEEEETTCSSSCHHHHHHHHHHSS-----------
T ss_pred hhcch-HHhhhhccccchHHHHHHHccCHHHHHHh----cCCC-EEEEEeCCCCCcChHHHHHHHHhCC-----------
Confidence 00000 00011 10001112222222333222332 5666 9999999999999988887766542
Q ss_pred cEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 690 PLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 690 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
.+++++++++||.. .... .+....+.+||.+++.
T Consensus 217 ~~~~~~~~~~gH~~-~~~~--~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 217 NCKLVTIPGDTHCY-DHHL--ELVTEAVKEFMLEQIA 250 (251)
T ss_dssp SEEEEEETTCCTTC-TTTH--HHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCccc-chhH--HHHHHHHHHHHHHhcc
Confidence 35889999999998 4332 4677789999998875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=183.55 Aligned_cols=294 Identities=9% Similarity=0.073 Sum_probs=191.8
Q ss_pred hccCCccCCcEEeCCeEEEEEEcC----CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC
Q psy4818 87 MANYEKYSAPQRQENNYFYFHNKG----LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK 162 (734)
Q Consensus 87 ~~~~~~~~~p~~~g~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~ 162 (734)
+......+.|..||.+++|..... ......||+.+..++..+.| . .+..++|||||++|||....
T Consensus 11 l~~~~~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~---------~~~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 11 FAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--E---------NATMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--E---------SCEEEEECTTSSEEEEEEEE
T ss_pred ceeeEEcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--c---------cCCCeEECCCCCEEEEEEec
Confidence 334444455555999999987642 22356799988777766655 1 14679999999999999887
Q ss_pred CCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCC-----------CCCcccccCCcEEEEEE
Q psy4818 163 SGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTA-----------DGTETTAHMGQKIYYHV 231 (734)
Q Consensus 163 ~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~ 231 (734)
.+.+..+||++|+++|+....+.... ...+.|||||+.|+|...+...... +|.........+||+++
T Consensus 80 ~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 80 EEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred cCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 65566899999999988654443332 5789999999999999864210000 00000001235799999
Q ss_pred CCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCC-----C-CceEEEEeCCCCCCCcccCCCCceeeeccccc
Q psy4818 232 LGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT-----Q-GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH 305 (734)
Q Consensus 232 l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~-~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~ 305 (734)
+.++... ..+.. + ....+.||||| |++...... . ..+||++| ++ ....+..+ ..
T Consensus 159 ~~~~~~~-~~l~~-~----~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~---------~~~~l~~~-~~ 218 (347)
T 2gop_A 159 TESEEVI-EEFEK-P----RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DG---------KEEKMFEK-VS 218 (347)
T ss_dssp TTTTEEE-EEEEE-E----TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TT---------EEEEEEEE-ES
T ss_pred CCCCeEE-eeecC-C----CcccccCCCCe--EEEEEecccccccccccccEEEeC--CC---------ceEEeccC-cc
Confidence 9876430 12222 2 23468999999 666654432 1 35899999 42 23344443 22
Q ss_pred eEEEEEecCCeEEEEeCCCC----CCceEEEEecCCCCCCCceEeecCCCCceeEE-EEEeeCCEEEEEEEeCCceeEEE
Q psy4818 306 HHEIIANNGPELIVKTTKNA----PKGKVVTINLNNPCEKNWKTLIPEDENRTLDV-VAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 306 ~~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
.. .++|||++|++.++... ...+|+.+| ++. ++.++... ...+.. ..+. ++ +++....++..+|+
T Consensus 219 ~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~- 288 (347)
T 2gop_A 219 FY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY- 288 (347)
T ss_dssp EE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-
T ss_pred ee-eECCCCCEEEEEEccccCCccccceEEEEC--CCc---eEeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-
Confidence 22 25999999999886542 356899999 443 45666554 233443 5555 45 88888888878888
Q ss_pred EECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEe
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCN 428 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d 428 (734)
++ +|+..+.+. ..+.+.++++++ .++++.++..+|.++|.+|
T Consensus 289 ~~--~g~~~~~~~-~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 IW--DGEIKPIAK-GRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE--SSSEEEEEC-SSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred Ec--CCceEEEec-CCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 87 576533333 356777888877 5888889999999999986
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-21 Score=199.39 Aligned_cols=246 Identities=14% Similarity=0.061 Sum_probs=157.9
Q ss_pred eEEEEEEEc-CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec--ccCC----
Q psy4818 458 QTKQVYFRS-KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI--RGGG---- 530 (734)
Q Consensus 458 ~~~~~~~~s-~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--rG~~---- 530 (734)
..+.+.+.+ .+|.++++.++.|++.. .+++|+||++||+.+....+.....+..+++++|++|+++|. ||.+
T Consensus 21 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~ 99 (283)
T 4b6g_A 21 SQQVWAHHAQTLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPND 99 (283)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCC
T ss_pred cEEEEEEechhhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEecccccccccccc
Confidence 344555544 47889999999999864 578999999999866543221111234566777999999996 4433
Q ss_pred -----CCCchhhhccccc-c-CCCchhHH-HH-HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 531 -----ELGEDWHNAGRLL-K-KQNCFDDF-QA-AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 531 -----~~g~~~~~~~~~~-~-~~~~~~D~-~~-~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
+.|..|+...... + ....+.++ .. .+.++ ++.+.+++|++|+|+|+||++++.++.++|++|+++++.+|
T Consensus 100 ~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~ 178 (283)
T 4b6g_A 100 DAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLI-EKHFPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSP 178 (283)
T ss_dssp SSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHH-HHHSCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESC
T ss_pred ccccccCCCcccccCccCcccchhhHHHHHHHHHHHHH-HHhCCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECC
Confidence 2233333221110 0 11122333 22 33333 33344578999999999999999999999999999999999
Q ss_pred cchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC-hHHHHHHHHHHhh
Q psy4818 602 ALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP-LHSYKFIATLQEK 680 (734)
Q Consensus 602 ~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~-~~~~~~~~~L~~~ 680 (734)
+++....... ...+...+|.. .+ .+..++|...++.. ...||+||+||+.|..|+. .++.+++++|++.
T Consensus 179 ~~~~~~~~~~--~~~~~~~~g~~--~~---~~~~~~~~~~~~~~---~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~ 248 (283)
T 4b6g_A 179 ILSPSLVPWG--EKAFTAYLGKD--RE---KWQQYDANSLIQQG---YKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAA 248 (283)
T ss_dssp CCCGGGSHHH--HHHHHHHHCSC--GG---GGGGGCHHHHHHHT---CCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHH
T ss_pred ccccccCcch--hhhHHhhcCCc--hH---HHHhcCHHHHHHhc---ccCCCEEEEecCCCccCcchhhHHHHHHHHHHc
Confidence 8875432100 00011112321 11 12234444333321 1233599999999999886 3389999999999
Q ss_pred hCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
|.+++++++++++|.+.. ......+.+.|+.++|+
T Consensus 249 -------g~~~~~~~~~g~~H~~~~----~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 249 -------NQPVDVRFHKGYDHSYYF----IASFIGEHIAYHAAFLK 283 (283)
T ss_dssp -------TCCCEEEEETTCCSSHHH----HHHHHHHHHHHHHTTCC
T ss_pred -------CCCceEEEeCCCCcCHhH----HHHHHHHHHHHHHHhcC
Confidence 999999999999998732 23456678899988763
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=193.92 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=163.4
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-c--cccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-P--TFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~--~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
.+..+.+.+.+.+|..+.+.++.|++. .++.|+||++|||...... . .|.. +...|+++||+|+.+||||++++
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~-~~~~la~~g~~vv~~d~r~~gg~ 155 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRR-WCTDLAAAGSVVVMVDFRNAWTA 155 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHH-HHHHHHHTTCEEEEEECCCSEET
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhH-HHHHHHhCCCEEEEEecCCCCCC
Confidence 456788888888998899999999863 2368999999998522222 1 3332 34556657999999999998644
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc-----CCCceeEEEEcCCcch
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ-----RPELYGAALILVGALD 604 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~-----~p~~~~a~v~~~~~~d 604 (734)
.. .......++|+.++++|+.++- ..| +|+|+|+|+||++++.++.+ .|+.++++|+.+|+++
T Consensus 156 ~~-------~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~ 226 (361)
T 1jkm_A 156 EG-------HHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYIS 226 (361)
T ss_dssp TE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCC
T ss_pred CC-------CCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCccc
Confidence 21 1123345789999999998762 234 99999999999999999987 7888999999999987
Q ss_pred hccccc----cccCcccccccCCCCCHHHHHHHH-------------hCCccCCCCCCCCCccCCcEEEEecCCCCCCCC
Q psy4818 605 MLRFNK----FTIAYYSESEFGSPNNKTHFHNLL-------------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP 667 (734)
Q Consensus 605 ~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~-------------~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~ 667 (734)
...... ......+....+..........+. ..+|+...... -...||+||++|++|..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--l~~l~P~Lii~G~~D~~~~- 303 (361)
T 1jkm_A 227 GGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDE--LRGLPPFVVAVNELDPLRD- 303 (361)
T ss_dssp CCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHH--HTTCCCEEEEEETTCTTHH-
T ss_pred cccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhh--HcCCCceEEEEcCcCcchh-
Confidence 621100 000000000000000111111100 12333110000 0122359999999999887
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCC-Cch---HHh-HHHHHHHHHHHHHHc
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG-TPL---MKS-IEEMTDIYVFLMKSL 725 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~---~~~-~~~~~~~~~fl~~~l 725 (734)
++.+++++|++. |.+++++++++++|++. ... ... .+....+.+||.++.
T Consensus 304 -~~~~~~~~l~~~-------g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 304 -EGIAFARRLARA-------GVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp -HHHHHHHHHHHT-------TCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHc-------CCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 889999999998 89999999999999876 211 222 456777899998764
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-20 Score=177.00 Aligned_cols=201 Identities=16% Similarity=0.125 Sum_probs=145.9
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCC--CcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYG--VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~--~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
..+.+.+++.|| +++++++.|++ .++.|+||++||++. ......+...+...|+++||.|+++|+||.|.....
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 80 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG---IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR 80 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS---CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC
T ss_pred ccceEEEECCCc-eEEEEEEcCCC---CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 356788899999 99999998875 357899999999632 222222223455677778999999999996654322
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY 615 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 615 (734)
+ .......+|+.+++++|.++ .+.++++++|+|+||.+++.++ ++| .++++|+.+|..+...
T Consensus 81 ~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~~-------- 142 (208)
T 3trd_A 81 Y------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYEG-------- 142 (208)
T ss_dssp C------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSGG--------
T ss_pred c------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccCC--------
Confidence 1 22234578999999999887 4558999999999999999999 667 7899998888762110
Q ss_pred ccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEE
Q psy4818 616 YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695 (734)
Q Consensus 616 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 695 (734)
..++.. .+.| +|+++|++|..|++.++.++++++.. .+++++
T Consensus 143 --------------------~~~~~~-------~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~~----------~~~~~~ 184 (208)
T 3trd_A 143 --------------------FASLTQ-------MASP-WLIVQGDQDEVVPFEQVKAFVNQISS----------PVEFVV 184 (208)
T ss_dssp --------------------GTTCCS-------CCSC-EEEEEETTCSSSCHHHHHHHHHHSSS----------CCEEEE
T ss_pred --------------------chhhhh-------cCCC-EEEEECCCCCCCCHHHHHHHHHHccC----------ceEEEE
Confidence 012222 3345 99999999999999998887776532 368899
Q ss_pred eCCCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 696 EQDAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
++++||.+.... .+....+.+||
T Consensus 185 ~~~~~H~~~~~~---~~~~~~i~~fl 207 (208)
T 3trd_A 185 MSGASHFFHGRL---IELRELLVRNL 207 (208)
T ss_dssp ETTCCSSCTTCH---HHHHHHHHHHH
T ss_pred eCCCCCcccccH---HHHHHHHHHHh
Confidence 999999987543 24444556665
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-18 Score=183.55 Aligned_cols=266 Identities=14% Similarity=0.100 Sum_probs=183.2
Q ss_pred EeCCeEEEEEEcCCCC-eeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 98 RQENNYFYFHNKGLQN-HSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
..+.+++|.....+.. ...|++.+..++..+.+.... ..+..++|||||++|||+...+|. ..|++||++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~-------~~v~~~~~Spdg~~la~~s~~~~~--~~i~~~d~~ 211 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-------QPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLA 211 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-------SCEEEEEECTTSSEEEEEECTTSS--CEEEEEETT
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC-------CcceeeEEcCCCCEEEEEEecCCC--cEEEEEECC
Confidence 4477888888764322 256788776666666665433 237889999999999999876543 689999999
Q ss_pred CCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEE
Q psy4818 177 TGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256 (734)
Q Consensus 177 ~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 256 (734)
+|+.............++|||||+.|+|+...+ ....||++++.++.. ..+ .........+.
T Consensus 212 tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~-------------g~~~i~~~d~~~~~~--~~l---~~~~~~~~~~~ 273 (415)
T 2hqs_A 212 NGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-------------GSLNLYVMDLASGQI--RQV---TDGRSNNTEPT 273 (415)
T ss_dssp TCCEEEEECCSSCEEEEEECTTSSEEEEEECTT-------------SSCEEEEEETTTCCE--EEC---CCCSSCEEEEE
T ss_pred CCcEEEeecCCCcccCEEEcCCCCEEEEEEecC-------------CCceEEEEECCCCCE--EeC---cCCCCcccceE
Confidence 998654333332346899999999999987522 234799999987642 111 12233567899
Q ss_pred EecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 257 VTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 257 ~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
|||||++|++...+. ....||++|+.++. ...+......... .|+|||+.|++.+..++ ...|+++|+
T Consensus 274 ~spdg~~l~~~s~~~-g~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-~~~i~~~d~ 342 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQA-GRPQVYKVNINGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDL 342 (415)
T ss_dssp ECTTSSEEEEEECTT-SSCEEEEEETTSSC---------CEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEET
T ss_pred ECCCCCEEEEEECCC-CCcEEEEEECCCCC---------EEEEecCCCcccCeEECCCCCEEEEEECcCC-ceEEEEEEC
Confidence 999999999887542 33689999998832 2222222222223 39999999998876543 567999999
Q ss_pred CCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCccc
Q psy4818 336 NNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKY 408 (734)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~ 408 (734)
+++. ...+.... .+..+.+. +++.|++....++...|++||+. |+.++.|+...+.+.+++++|..
T Consensus 343 ~~~~---~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 343 ATGG---VQVLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTCC---EEECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred CCCC---EEEecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 8876 34444332 33444444 44567777767777799999994 66667888777888888888764
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=183.14 Aligned_cols=217 Identities=13% Similarity=0.043 Sum_probs=152.7
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc----HHHHHHHHhc----CeEEEEEeccc
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS----ISRCMFLRHF----NGIYAIPNIRG 528 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~----~~~~~~l~~~----G~~v~~~~~rG 528 (734)
..+++.+.+. +|..+.+.++.|+++...++.|+||++||+.+....+... ..++..|.++ ||+|+.+|+|+
T Consensus 31 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~ 110 (268)
T 1jjf_A 31 QVVNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNA 110 (268)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCC
T ss_pred eEEEEEEeccccCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCC
Confidence 5677777765 6788999999999876667899999999986554322211 1234445544 59999999998
Q ss_pred CCCC-CchhhhccccccCCCchhH-HHHHHHHHHHcCCC--CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcch
Q psy4818 529 GGEL-GEDWHNAGRLLKKQNCFDD-FQAAAEYMINKKYT--KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604 (734)
Q Consensus 529 ~~~~-g~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d 604 (734)
.+.. ...|. ...++ +..+++++.++..+ |++|++|+|+|+||++++.++.++|++|+++|+.+|..+
T Consensus 111 ~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~ 181 (268)
T 1jjf_A 111 AGPGIADGYE---------NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 181 (268)
T ss_dssp CCTTCSCHHH---------HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTT
T ss_pred CCccccccHH---------HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCCC
Confidence 5421 11110 01233 33456666655334 899999999999999999999999999999999999775
Q ss_pred hccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCC
Q psy4818 605 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSL 684 (734)
Q Consensus 605 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~ 684 (734)
+.. +...+.... .. .. ...||+||+||++|..|+. +.+++++|++.
T Consensus 182 ~~~---------~~~~~~~~~--~~-------------~~----~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~---- 227 (268)
T 1jjf_A 182 TYP---------NERLFPDGG--KA-------------AR----EKLKLLFIACGTNDSLIGF--GQRVHEYCVAN---- 227 (268)
T ss_dssp SCC---------HHHHCTTTT--HH-------------HH----HHCSEEEEEEETTCTTHHH--HHHHHHHHHHT----
T ss_pred CCc---------hhhhcCcch--hh-------------hh----hcCceEEEEecCCCCCccH--HHHHHHHHHHC----
Confidence 421 111111110 00 01 3445699999999998874 77899999988
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 685 PYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 685 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
|.+++++++++++|.+.. ..+...+++.||.++
T Consensus 228 ---g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 228 ---NINHVYWLIQGGGHDFNV----WKPGLWNFLQMADEA 260 (268)
T ss_dssp ---TCCCEEEEETTCCSSHHH----HHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEcCCCCcCHhH----HHHHHHHHHHHHHhc
Confidence 889999999999998742 234566788999876
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=193.69 Aligned_cols=210 Identities=16% Similarity=0.190 Sum_probs=150.2
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
...+.|. +..+.+.++.|++. .++.|+||++|||............+...|+++||+|+++||||+++..
T Consensus 58 ~~~i~y~---~~~~~~~~~~p~~~--~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~----- 127 (303)
T 4e15_A 58 VDHLRYG---EGRQLVDVFYSEKT--TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT----- 127 (303)
T ss_dssp EEEEECS---STTCEEEEEECTTC--CTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC-----
T ss_pred eeeeccC---CCCcEEEEEecCCC--CCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC-----
Confidence 4455554 44467788888642 4678999999998543332222222346666789999999999977643
Q ss_pred ccccccCCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcCC-------CceeEEEEcCCcchhccccc
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQRP-------ELYGAALILVGALDMLRFNK 610 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p-------~~~~a~v~~~~~~d~~~~~~ 610 (734)
....++|+.+++++|.+. ...+++||+|+|+|+||++++.++.+.+ +.++++|+.+|+.|+.....
T Consensus 128 ------~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~ 201 (303)
T 4e15_A 128 ------LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSN 201 (303)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHT
T ss_pred ------hhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhc
Confidence 112367999999999773 2356889999999999999999988654 27999999999988754432
Q ss_pred cccCcccccccCCCCCHHHHHHHHhCCcc-CCCCCCCCCc----cCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCC
Q psy4818 611 FTIAYYSESEFGSPNNKTHFHNLLSYSPL-HNIKVPPNNT----QYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLP 685 (734)
Q Consensus 611 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~-~~~~~p~~~~----~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~ 685 (734)
.. .......++... +.+...||+ ..+.. + ..| +||+||++|..|++.++.+++++|++.
T Consensus 202 ~~-~~~~~~~~~~~~-----~~~~~~sp~~~~~~~----~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~----- 265 (303)
T 4e15_A 202 LE-SVNPKNILGLNE-----RNIESVSPMLWEYTD----VTVWNSTK-IYVVAAEHDSTTFIEQSRHYADVLRKK----- 265 (303)
T ss_dssp CT-TTSGGGTTCCCT-----TTTTTTCGGGCCCCC----GGGGTTSE-EEEEEEEESCHHHHHHHHHHHHHHHHH-----
T ss_pred cc-ccchhhhhcCCH-----HHHHHcCchhhcccc----cccCCCCC-EEEEEeCCCCCCchHHHHHHHHHHHHC-----
Confidence 10 011111122211 123466777 45543 3 445 999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCCCC
Q psy4818 686 YQKNPLLLRVEQDAGHG 702 (734)
Q Consensus 686 ~~~~~~~~~~~~~~gH~ 702 (734)
|.+++++++++++|.
T Consensus 266 --g~~~~~~~~~g~~H~ 280 (303)
T 4e15_A 266 --GYKASFTLFKGYDHF 280 (303)
T ss_dssp --TCCEEEEEEEEEETT
T ss_pred --CCceEEEEeCCCCch
Confidence 899999999999994
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=193.49 Aligned_cols=230 Identities=16% Similarity=0.154 Sum_probs=158.4
Q ss_pred Cc-eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHH-hcCeEEEEEecccCCCC
Q psy4818 456 LF-QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLR-HFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 456 ~~-~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~-~~G~~v~~~~~rG~~~~ 532 (734)
.+ ..+.+.+++.+| .|++.+| +. .++.|+||++|||.... ....+.. +...|+ +.||.|+.+||||.|+.
T Consensus 52 ~~~~~~~~~i~~~~g-~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~Vv~~dyrg~g~~ 124 (311)
T 1jji_A 52 RVERVEDRTIKGRNG-DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDA-LCRRIARLSNSTVVSVDYRLAPEH 124 (311)
T ss_dssp CCSEEEEEEEEETTE-EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHH-HHHHHHHHHTSEEEEEECCCTTTS
T ss_pred CcceEEEEEecCCCC-cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHH-HHHHHHHHhCCEEEEecCCCCCCC
Confidence 44 588899988888 8999988 43 35789999999986322 2223433 344455 56999999999997764
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCCc----eeEEEEcCCcchh
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPEL----YGAALILVGALDM 605 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~~----~~a~v~~~~~~d~ 605 (734)
. .....+|+.++++|+.+.. .+|+++|+|+|+|+||++++.++.++|+. ++++|+.+|++|+
T Consensus 125 ~-----------~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 193 (311)
T 1jji_A 125 K-----------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNF 193 (311)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCS
T ss_pred C-----------CCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC
Confidence 2 1224679999999998752 36888999999999999999999877765 9999999999876
Q ss_pred ccccccccCcccccccC-CC--CCHHHHHHH-------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH
Q psy4818 606 LRFNKFTIAYYSESEFG-SP--NNKTHFHNL-------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669 (734)
Q Consensus 606 ~~~~~~~~~~~~~~~~g-~~--~~~~~~~~~-------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~ 669 (734)
...... + .++. .+ ........+ ...+|+. ... ...||+||++|++|..+ .+
T Consensus 194 ~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~l---~~~~P~li~~G~~D~l~--~~ 260 (311)
T 1jji_A 194 VAPTPS-----L-LEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIF--ADL---ENLPPALIITAEYDPLR--DE 260 (311)
T ss_dssp SSCCHH-----H-HHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGG--SCC---TTCCCEEEEEEEECTTH--HH
T ss_pred CCCCcc-----H-HHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCccc--ccc---cCCChheEEEcCcCcch--HH
Confidence 432100 0 0000 00 011111110 1124443 111 23456999999999987 47
Q ss_pred HHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHH
Q psy4818 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 670 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~ 723 (734)
+..++++|++. |.+++++++++++|++... .....+....+.+||.+
T Consensus 261 ~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 261 GEVFGQMLRRA-------GVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHHHHHHHHT-------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc-------CCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 88899999998 8999999999999988532 12234667778888864
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=187.92 Aligned_cols=243 Identities=15% Similarity=0.061 Sum_probs=157.8
Q ss_pred ceEEEEEEEcC-CCcEEeEEEEEecccc----CCCCCcEEEEecCCCCCcCCccccH--HHHHHHHhcCeEEEEEecccC
Q psy4818 457 FQTKQVYFRSK-DGTRVPMYIIHRVGAL----RNRRNPVIIYGYGGYGVSVLPTFSI--SRCMFLRHFNGIYAIPNIRGG 529 (734)
Q Consensus 457 ~~~~~~~~~s~-dg~~i~~~~~~p~~~~----~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~ 529 (734)
+..+.+++.+. .|..+++.++.|++.+ ++++.|+||++||+.+.... |.. ....++++.|++|+.+++|++
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~ 82 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHNS--WLKRTNVERLLRGTNLIVVMPNTSNG 82 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCTTH--HHHHSCHHHHTTTCCCEEEECCCTTS
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHHH--HHhccCHHHHHhcCCeEEEEECCCCC
Confidence 55677777764 6789999999998852 35789999999998755432 322 244556667999999999876
Q ss_pred CCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc
Q psy4818 530 GELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 609 (734)
Q Consensus 530 ~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 609 (734)
+..... . + ........+|+...++.+..+..+|+++++|+|+|+||++++.++. +|++|+++|+.+|..++....
T Consensus 83 ~~~~~~--~-~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~~ 157 (263)
T 2uz0_A 83 WYTDTQ--Y-G-FDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNFS 157 (263)
T ss_dssp TTSBCT--T-S-CBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSCC
T ss_pred ccccCC--C-c-ccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhcc
Confidence 432100 0 0 0000111234444454443323468899999999999999999999 999999999999998765422
Q ss_pred cccc---C-cccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccC-CcEEEEecCCCCCCCChHHHHHHHHHHhhhCCC
Q psy4818 610 KFTI---A-YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQY-PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSL 684 (734)
Q Consensus 610 ~~~~---~-~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~-P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~ 684 (734)
.... . ..+...++.+... .+..++|...+.. +.. +|+||+||+.|..| .++.+++++|++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~p~li~~G~~D~~v--~~~~~~~~~l~~~---- 223 (263)
T 2uz0_A 158 PESQNLGSPAYWRGVFGEIRDW----TTSPYSLESLAKK----SDKKTKLWAWCGEQDFLY--EANNLAVKNLKKL---- 223 (263)
T ss_dssp GGGTTCSCHHHHHHHHCCCSCT----TTSTTSHHHHGGG----CCSCSEEEEEEETTSTTH--HHHHHHHHHHHHT----
T ss_pred ccccccccchhHHHHcCChhhh----ccccCCHHHHHHh----ccCCCeEEEEeCCCchhh--HHHHHHHHHHHHC----
Confidence 1000 0 0011112222111 1223444444443 221 45999999999987 4678999999988
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 685 PYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 685 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
|.+++++++++ ||.+.. ..+...++++||.++|+..
T Consensus 224 ---g~~~~~~~~~g-~H~~~~----~~~~~~~~~~~l~~~l~~~ 259 (263)
T 2uz0_A 224 ---GFDVTYSHSAG-THEWYY----WEKQLEVFLTTLPIDFKLE 259 (263)
T ss_dssp ---TCEEEEEEESC-CSSHHH----HHHHHHHHHHHSSSCCCCC
T ss_pred ---CCCeEEEECCC-CcCHHH----HHHHHHHHHHHHHhhccch
Confidence 88999999999 997631 1355677899999888754
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=182.35 Aligned_cols=237 Identities=16% Similarity=0.110 Sum_probs=158.6
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..+.+.++ .+|.+|.++++.|++ .+.|+||++||+.+......|. .+...|+++||.|+++|+||.|.......
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~~ 94 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG----EIYDMAIIFHGFTANRNTSLLR-EIANSLRDENIASVRFDFNGHGDSDGKFE 94 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS----SSEEEEEEECCTTCCTTCHHHH-HHHHHHHHTTCEEEEECCTTSTTSSSCGG
T ss_pred cceEEEec-cCCEEEEEEEEcCCC----CCCCEEEEEcCCCCCccccHHH-HHHHHHHhCCcEEEEEccccccCCCCCCC
Confidence 45666665 589999999998864 4589999999987654333333 34566777899999999999665442211
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc------
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF------ 611 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~------ 611 (734)
.. .-....+|+.++++++.++. +.++++|+|+|+||++++.++.++|+.++++|+.+|..+.......
T Consensus 95 ~~----~~~~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~ 168 (270)
T 3pfb_A 95 NM----TVLNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGV 168 (270)
T ss_dssp GC----CHHHHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTE
T ss_pred cc----CHHHHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhcc
Confidence 11 11123678888899987653 3358999999999999999999999999999999998765431100
Q ss_pred ccCccccc---cc-CCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCC
Q psy4818 612 TIAYYSES---EF-GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 687 (734)
Q Consensus 612 ~~~~~~~~---~~-g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~ 687 (734)
.....+.. .+ ...........+....+...+.. ++.| +|+++|++|..+++..+.++++.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~--------- 234 (270)
T 3pfb_A 169 TYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQ----FTKP-VCLIHGTDDTVVSPNASKKYDQIYQ--------- 234 (270)
T ss_dssp ECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTT----CCSC-EEEEEETTCSSSCTHHHHHHHHHCS---------
T ss_pred ccCcccccccccccccccchhHhhcccccCHHHHHhh----CCcc-EEEEEcCCCCCCCHHHHHHHHHhCC---------
Confidence 00000000 00 10011222334444444444444 6677 9999999999999988877776543
Q ss_pred CCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 688 KNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
.+++++++++||.+.... ..+....+.+||.++
T Consensus 235 --~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 235 --NSTLHLIEGADHCFSDSY--QKNAVNLTTDFLQNN 267 (270)
T ss_dssp --SEEEEEETTCCTTCCTHH--HHHHHHHHHHHHC--
T ss_pred --CCeEEEcCCCCcccCccc--hHHHHHHHHHHHhhc
Confidence 358999999999987432 246666678887654
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=186.19 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=163.8
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHH--HHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSIS--RCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
.++.+++.|. .+.+|+++ +.|.. ++.|+||++||+.+......|... +.+++++.|++|+++|.++++.|.
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~~----~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~- 81 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSGG----ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYS- 81 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS----TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTC-
T ss_pred eEEEEEEECccCCCceEEE-ECCCC----CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCcccc-
Confidence 4566677765 46677777 44432 578999999998532222233222 346677789999999998765543
Q ss_pred hhhhccc--cccCCCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc
Q psy4818 535 DWHNAGR--LLKKQNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK 610 (734)
Q Consensus 535 ~~~~~~~--~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~ 610 (734)
+|..... +......+++++ .++.++.++.-+++++++|+|+||||++++.++.++|++|+++|+.+|.+++.....
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 161 (304)
T 1sfr_A 82 DWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMG 161 (304)
T ss_dssp BCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTH
T ss_pred ccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccch
Confidence 2222110 000133455543 344444443347888999999999999999999999999999999999876543110
Q ss_pred -c-------ccCc-ccccccCCCCCHHHHHHHHhCCccCCCCCCCCCc--cCCcEEEEecCCCC--------------CC
Q psy4818 611 -F-------TIAY-YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNT--QYPATLVLTGDHDD--------------RV 665 (734)
Q Consensus 611 -~-------~~~~-~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~--~~P~~Li~~g~~D~--------------~v 665 (734)
. ..+. .+...||.+.. ..+.+.+|+..+.. + +-+|++|.+|+.|+ +|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~----l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~ 233 (304)
T 1sfr_A 162 PTLIGLAMGDAGGYKASDMWGPKED----PAWQRNDPLLNVGK----LIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGF 233 (304)
T ss_dssp HHHHHHHHHHTTSCCHHHHHCSTTS----THHHHSCTTTTHHH----HHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHH
T ss_pred hhhhhHhhhhccccchHHhcCCcch----hhhHhcCHHHHHHH----hhhcCCeEEEEecCCCCccccccccccchhHHH
Confidence 0 0000 01123454432 23456778766543 3 22459999999998 67
Q ss_pred CChHHHHHHHHHHhhhCCCCCCC-CcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 666 PPLHSYKFIATLQEKIGSLPYQK-NPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 666 ~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
++.++.+++++|++. | .++++.+|++++|.+.. ..+...+++.||.++|+..
T Consensus 234 ~~~~~~~~~~~L~~~-------G~~~v~~~~~~~g~H~~~~----w~~~l~~~l~~l~~~l~~~ 286 (304)
T 1sfr_A 234 VRTSNIKFQDAYNAG-------GGHNGVFDFPDSGTHSWEY----WGAQLNAMKPDLQRALGAT 286 (304)
T ss_dssp HHHHHHHHHHHHHHT-------TCCSEEEECCSCCCSSHHH----HHHHHHHTHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhC-------CCCceEEEecCCCccCHHH----HHHHHHHHHHHHHHhcCCC
Confidence 889999999999998 8 99999999888997531 2345567899999999864
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=174.92 Aligned_cols=208 Identities=15% Similarity=0.090 Sum_probs=153.3
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCC--CcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYG--VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~--~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
..+.+.+++.|| ++.++++.|++.. .++.|+||++||+.. ......+...+...|+++||.|+++|+||.|.....
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~~-~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 86 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 86 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCCC-ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCCC
Confidence 467888999898 8999999987620 145899999999642 222222222355677778999999999997654422
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY 615 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 615 (734)
+ .......+|+.++++++.++. +.++++++|+|+||++++.++.++ .++++|+.+|..+...
T Consensus 87 ~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~-------- 148 (220)
T 2fuk_A 87 F------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD-------- 148 (220)
T ss_dssp C------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC--------
T ss_pred c------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh--------
Confidence 2 122345789999999998873 677999999999999999999886 7899999998775432
Q ss_pred ccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEE
Q psy4818 616 YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695 (734)
Q Consensus 616 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 695 (734)
+..+. ...| +|+++|++|..|++.++.+++++++ ..+++++
T Consensus 149 -----------------------~~~~~-----~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~----------~~~~~~~ 189 (220)
T 2fuk_A 149 -----------------------FSDVQ-----PPAQ-WLVIQGDADEIVDPQAVYDWLETLE----------QQPTLVR 189 (220)
T ss_dssp -----------------------CTTCC-----CCSS-EEEEEETTCSSSCHHHHHHHHTTCS----------SCCEEEE
T ss_pred -----------------------hhhcc-----cCCc-EEEEECCCCcccCHHHHHHHHHHhC----------cCCcEEE
Confidence 11111 1234 9999999999999988887776652 2468899
Q ss_pred eCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 696 EQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
++++||.+... . .+....+.+||.++|..
T Consensus 190 ~~~~~H~~~~~-~--~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 190 MPDTSHFFHRK-L--IDLRGALQHGVRRWLPA 218 (220)
T ss_dssp ETTCCTTCTTC-H--HHHHHHHHHHHGGGCSS
T ss_pred eCCCCceehhh-H--HHHHHHHHHHHHHHhhc
Confidence 99999998763 2 35667789999988753
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=194.12 Aligned_cols=241 Identities=14% Similarity=0.130 Sum_probs=162.5
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..+++.++. +|..++++++.+. +++.|+||++||+.+.... |.......+.++||.|+++|+||.|+...
T Consensus 134 ~~~~~~i~~-~~~~l~~~~~~~~----~~~~p~vv~~HG~~~~~~~--~~~~~~~~~~~~g~~vi~~D~~G~G~s~~--- 203 (405)
T 3fnb_A 134 PLKSIEVPF-EGELLPGYAIISE----DKAQDTLIVVGGGDTSRED--LFYMLGYSGWEHDYNVLMVDLPGQGKNPN--- 203 (405)
T ss_dssp CCEEEEEEE-TTEEEEEEEECCS----SSCCCEEEEECCSSCCHHH--HHHHTHHHHHHTTCEEEEECCTTSTTGGG---
T ss_pred CcEEEEEeE-CCeEEEEEEEcCC----CCCCCEEEEECCCCCCHHH--HHHHHHHHHHhCCcEEEEEcCCCCcCCCC---
Confidence 467777776 6788999888432 3456999999997544332 22222223335699999999999665421
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc--
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY-- 615 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-- 615 (734)
.. ........+|+.+++++|..++ ++|+|+|+|+||++++.++.++| .++++|+.+|+.++..........
T Consensus 204 ~~--~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~~ 276 (405)
T 3fnb_A 204 QG--LHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTAL 276 (405)
T ss_dssp GT--CCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC---
T ss_pred CC--CCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhhh
Confidence 11 1222344778889999987654 68999999999999999999999 889999999998875432110000
Q ss_pred ---cccc-----------------------ccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH
Q psy4818 616 ---YSES-----------------------EFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669 (734)
Q Consensus 616 ---~~~~-----------------------~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~ 669 (734)
.+.. .++.......+..+..+++...+.. +++| +||++|++|..|++.+
T Consensus 277 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vLii~G~~D~~v~~~~ 351 (405)
T 3fnb_A 277 KAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNK----IDVP-SLFLVGAGEDSELMRQ 351 (405)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGG----CCSC-EEEEEETTSCHHHHHH
T ss_pred hCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhh----CCCC-EEEEecCCCcCCChHH
Confidence 0000 0111111122233334444433443 6777 9999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC-chHHhHHHHHHHHHHHHHHcCC
Q psy4818 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT-PLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 670 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+.+++++|++. +.++++++++++.|+... ......+....+.+||.++|+.
T Consensus 352 ~~~l~~~l~~~-------~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 352 SQVLYDNFKQR-------GIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp HHHHHHHHHHT-------TCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhccC-------CCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99999999988 889999999776665322 1222356677899999999974
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-20 Score=179.46 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=129.0
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH---
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN--- 561 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~--- 561 (734)
.+..|+||++||..+... .|. .+.+.|...|+.|++|+.+|.+.|+..+..... .....+++..+.++.+++
T Consensus 19 ~~a~~~Vv~lHG~G~~~~--~~~-~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 93 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGGTAA--DII-SLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIE 93 (210)
T ss_dssp TTCSEEEEEECCTTCCHH--HHH-GGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHH--HHH-HHHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHH
Confidence 456789999999432221 121 123445557999999999987666544443221 122334444444444332
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCC
Q psy4818 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHN 641 (734)
Q Consensus 562 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~ 641 (734)
...+|++||+++|+|+||++++.++.++|+.|+++|+.+|.+-.... ... ..
T Consensus 94 ~~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~-----------------~~~-----------~~ 145 (210)
T 4h0c_A 94 AQGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQEL-----------------AIG-----------NY 145 (210)
T ss_dssp HTTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSC-----------------CGG-----------GC
T ss_pred HhCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhh-----------------hhh-----------hh
Confidence 23479999999999999999999999999999999988874311000 000 00
Q ss_pred CCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 642 IKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 642 ~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
... ..+.| +|++||++|++||+.++++++++|++. |.++++++||+.||++.. ++...+.+||
T Consensus 146 ~~~---~~~~P-vl~~hG~~D~~vp~~~~~~~~~~L~~~-------g~~v~~~~ypg~gH~i~~------~el~~i~~wL 208 (210)
T 4h0c_A 146 KGD---FKQTP-VFISTGNPDPHVPVSRVQESVTILEDM-------NAAVSQVVYPGRPHTISG------DEIQLVNNTI 208 (210)
T ss_dssp CBC---CTTCE-EEEEEEESCTTSCHHHHHHHHHHHHHT-------TCEEEEEEEETCCSSCCH------HHHHHHHHTT
T ss_pred hhh---ccCCc-eEEEecCCCCccCHHHHHHHHHHHHHC-------CCCeEEEEECCCCCCcCH------HHHHHHHHHH
Confidence 001 02334 999999999999999999999999999 999999999999998852 3445567776
Q ss_pred H
Q psy4818 722 M 722 (734)
Q Consensus 722 ~ 722 (734)
.
T Consensus 209 ~ 209 (210)
T 4h0c_A 209 L 209 (210)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=177.69 Aligned_cols=207 Identities=15% Similarity=0.048 Sum_probs=155.5
Q ss_pred CCceEEEEEEEcC--CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 455 TLFQTKQVYFRSK--DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 455 ~~~~~~~~~~~s~--dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
..+..+.+.+++. ++. ..+.+++|... ..++.|+||++||..+... .|.. +...|+++||.|+++|+||.+..
T Consensus 21 g~~~~~~~~~~~~~~~~~-~~~~l~~p~~~-~~~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~g~g~~ 95 (262)
T 1jfr_A 21 GPYATSQTSVSSLVASGF-GGGTIYYPTST-ADGTFGAVVISPGFTAYQS--SIAW-LGPRLASQGFVVFTIDTNTTLDQ 95 (262)
T ss_dssp CSSCEEEEEECTTTCSSS-CCEEEEEESCC-TTCCEEEEEEECCTTCCGG--GTTT-HHHHHHTTTCEEEEECCSSTTCC
T ss_pred CCCCccceEecceeccCC-CceeEEecCCC-CCCCCCEEEEeCCcCCCch--hHHH-HHHHHHhCCCEEEEeCCCCCCCC
Confidence 4566777777765 343 35788888752 2467899999999865543 2333 45667778999999999996643
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHH----cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMIN----KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
.. ...+|+.++++++.+ ...++.++++++|+|+||++++.++.++|+ ++++|+.+|+..
T Consensus 96 ~~------------~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~---- 158 (262)
T 1jfr_A 96 PD------------SRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT---- 158 (262)
T ss_dssp HH------------HHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS----
T ss_pred Cc------------hhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc----
Confidence 21 124688899999987 344678899999999999999999999998 799998777431
Q ss_pred cccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH-HHHHHHHHHhhhCCCCCC
Q psy4818 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH-SYKFIATLQEKIGSLPYQ 687 (734)
Q Consensus 609 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~-~~~~~~~L~~~~~~~~~~ 687 (734)
...+.. ++.| +|+++|++|..+++.+ +.++++.|+ .
T Consensus 159 ------------------------------~~~~~~----~~~P-~l~i~G~~D~~~~~~~~~~~~~~~l~-~------- 195 (262)
T 1jfr_A 159 ------------------------------DKTWPE----LRTP-TLVVGADGDTVAPVATHSKPFYESLP-G------- 195 (262)
T ss_dssp ------------------------------CCCCTT----CCSC-EEEEEETTCSSSCTTTTHHHHHHHSC-T-------
T ss_pred ------------------------------cccccc----cCCC-EEEEecCccccCCchhhHHHHHHHhh-c-------
Confidence 112222 4555 9999999999999998 999998884 2
Q ss_pred CCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 688 KNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
+.++++++++++||.+..... .+....+.+||.++++..
T Consensus 196 ~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 196 SLDKAYLELRGASHFTPNTSD--TTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp TSCEEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEeCCCCcCCcccch--HHHHHHHHHHHHHHhcCc
Confidence 467899999999998865432 366778899999999754
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-19 Score=177.86 Aligned_cols=232 Identities=15% Similarity=0.047 Sum_probs=155.5
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCC-cCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
.++..+.+.||.++++.++.|++ .++.|+||++||+... .....|...+..+|++. |.|+++|+||+++...
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~~--- 75 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKN---QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVSL--- 75 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSS---SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSCH---
T ss_pred ceEEEEecCCcEEEEEEEEccCC---CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCcccc---
Confidence 34567788899999999999874 3578999999998622 22333445567788764 9999999998765321
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc-----
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT----- 612 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~----- 612 (734)
...++|+.++++++.++ .+.++++|+|+|+||++++.++.+ +.++++|+.+|+.++.......
T Consensus 76 --------~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~ 143 (275)
T 3h04_A 76 --------DCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYY 143 (275)
T ss_dssp --------HHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHH
T ss_pred --------chhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchh
Confidence 22467999999999887 677899999999999999999988 6789999999988653211000
Q ss_pred ------cCcccccc------cCCCCCHHHHHH-------------HHhCCc----c----CCCCCCCCCccCCcEEEEec
Q psy4818 613 ------IAYYSESE------FGSPNNKTHFHN-------------LLSYSP----L----HNIKVPPNNTQYPATLVLTG 659 (734)
Q Consensus 613 ------~~~~~~~~------~g~~~~~~~~~~-------------~~~~sp----~----~~~~~p~~~~~~P~~Li~~g 659 (734)
........ ............ +..... + ..+.. +. | +||++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-P-~lii~G 217 (275)
T 3h04_A 144 AKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKT----LP-P-VFIAHC 217 (275)
T ss_dssp HHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTT----CC-C-EEEEEE
T ss_pred hcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhcc----CC-C-EEEEec
Confidence 00000000 000000000000 100000 0 00121 44 4 999999
Q ss_pred CCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHH-hHHHHHHHHHHHHHHcC
Q psy4818 660 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMK-SIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 660 ~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l~ 726 (734)
++|..||+.++.++++++. ...+++++++||.+...... ..+....+.+||.++|.
T Consensus 218 ~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 218 NGDYDVPVEESEHIMNHVP-----------HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp TTCSSSCTHHHHHHHTTCS-----------SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCChHHHHHHHHhcC-----------CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999998887776543 34689999999997654321 24677789999999874
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=182.93 Aligned_cols=203 Identities=16% Similarity=0.071 Sum_probs=152.4
Q ss_pred ceEEEEEEEc--CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 457 FQTKQVYFRS--KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 457 ~~~~~~~~~s--~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
+......+.. .+|.. .+.+++|... .+.|+||++||+.+... .|. .+...|+++||.|+++|+||.|+...
T Consensus 67 ~~~~~~~~~~~~~~g~~-~~~~~~p~~~---~~~p~vv~~HG~~~~~~--~~~-~~~~~la~~G~~vv~~d~~g~g~s~~ 139 (306)
T 3vis_A 67 FSVSEERASRFGADGFG-GGTIYYPREN---NTYGAIAISPGYTGTQS--SIA-WLGERIASHGFVVIAIDTNTTLDQPD 139 (306)
T ss_dssp SCEEEEEECTTTCSSSC-CEEEEEESSC---SCEEEEEEECCTTCCHH--HHH-HHHHHHHTTTEEEEEECCSSTTCCHH
T ss_pred ccceeeeeeccccCCCc-ceEEEeeCCC---CCCCEEEEeCCCcCCHH--HHH-HHHHHHHhCCCEEEEecCCCCCCCcc
Confidence 3344444443 45543 4678888763 37899999999765433 232 34567778899999999999654321
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHc------CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINK------KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~------~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
...+|+.++++++.+. ..+|++|++++|+|+||.+++.++.++|+ ++++|+.+|+..
T Consensus 140 ------------~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~---- 202 (306)
T 3vis_A 140 ------------SRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL---- 202 (306)
T ss_dssp ------------HHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS----
T ss_pred ------------hHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC----
Confidence 1236899999999887 67889999999999999999999999997 788888877442
Q ss_pred cccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCCh-HHHHHHHHHHhhhCCCCCC
Q psy4818 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL-HSYKFIATLQEKIGSLPYQ 687 (734)
Q Consensus 609 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~-~~~~~~~~L~~~~~~~~~~ 687 (734)
...+.. ++.| +|+++|++|..+++. ++..++++++..
T Consensus 203 ------------------------------~~~~~~----~~~P-~lii~G~~D~~~~~~~~~~~~~~~l~~~------- 240 (306)
T 3vis_A 203 ------------------------------NKSWRD----ITVP-TLIIGAEYDTIASVTLHSKPFYNSIPSP------- 240 (306)
T ss_dssp ------------------------------CCCCTT----CCSC-EEEEEETTCSSSCTTTTHHHHHHTCCTT-------
T ss_pred ------------------------------cccccc----CCCC-EEEEecCCCcccCcchhHHHHHHHhccC-------
Confidence 011122 4455 999999999999998 699999888765
Q ss_pred CCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 688 KNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
+ ++++++++++||++..... .+....+.+||.++|+..
T Consensus 241 ~-~~~~~~~~g~gH~~~~~~~--~~~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 241 T-DKAYLELDGASHFAPNITN--KTIGMYSVAWLKRFVDED 278 (306)
T ss_dssp S-CEEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSCC
T ss_pred C-CceEEEECCCCccchhhch--hHHHHHHHHHHHHHccCc
Confidence 5 8899999999999865433 356678899999998754
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=183.52 Aligned_cols=245 Identities=14% Similarity=0.123 Sum_probs=163.1
Q ss_pred CCceEEEE-EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 455 TLFQTKQV-YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 455 ~~~~~~~~-~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
..+..+++ .+...||.+|.+.++.|.+ ++.|+||++||+.+... .|.. +...|+++||.|+++|+||.|...
T Consensus 30 ~~~~~~~~~~~~~~dg~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~g~~vi~~D~~G~G~S~ 102 (342)
T 3hju_A 30 QSIPYQDLPHLVNADGQYLFCRYWKPTG----TPKALIFVSHGAGEHSG--RYEE-LARMLMGLDLLVFAHDHVGHGQSE 102 (342)
T ss_dssp TSCBTTSSCEEECTTSCEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGHH-HHHHHHTTTEEEEEECCTTSTTSC
T ss_pred CCcccccCceEEccCCeEEEEEEeCCCC----CCCcEEEEECCCCcccc--hHHH-HHHHHHhCCCeEEEEcCCCCcCCC
Confidence 34444555 6778899999999998864 56799999999865544 3433 456677779999999999965443
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc-
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT- 612 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~- 612 (734)
.. ...........+|+.+++++|..+ .+..+++|+|+|+||++++.++.++|++++++|+.+|+.+........
T Consensus 103 ~~---~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 177 (342)
T 3hju_A 103 GE---RMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTF 177 (342)
T ss_dssp SS---TTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHH
T ss_pred Cc---CCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHH
Confidence 11 111111123367889999998776 456789999999999999999999999999999999976543211000
Q ss_pred -----------cCc----ccccccCCCCCHHHHHHHHhCCcc----------------------CCCCCCCCCccCCcEE
Q psy4818 613 -----------IAY----YSESEFGSPNNKTHFHNLLSYSPL----------------------HNIKVPPNNTQYPATL 655 (734)
Q Consensus 613 -----------~~~----~~~~~~g~~~~~~~~~~~~~~sp~----------------------~~~~~p~~~~~~P~~L 655 (734)
... .....+. ....+....+. ..|+ ..+.. ++.| +|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-vl 250 (342)
T 3hju_A 178 KVLAAKVLNLVLPNLSLGPIDSSVL-SRNKTEVDIYN-SDPLICRAGLKVCFGIQLLNAVSRVERALPK----LTVP-FL 250 (342)
T ss_dssp HHHHHHHHHHHCTTCBCCCCCGGGS-CSCHHHHHHHH-TCTTCCCSCCBHHHHHHHHHHHHHHHHHGGG----CCSC-EE
T ss_pred HHHHHHHHHHhccccccCccccccc-ccchHHHHHHh-cCcccccccccHHHHHHHHHHHHHHHHHHHh----CCcC-EE
Confidence 000 0000000 01111111111 1111 12222 5666 99
Q ss_pred EEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-HhHHHHHHHHHHHHHHcCC
Q psy4818 656 VLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-KSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 656 i~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~l~~ 727 (734)
+++|++|..|++.++.++++.+. +..+++++++++||.+..... ...+....+++||.+++..
T Consensus 251 ii~G~~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (342)
T 3hju_A 251 LLQGSADRLCDSKGAYLLMELAK---------SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 314 (342)
T ss_dssp EEEETTCSSSCHHHHHHHHHHCC---------CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCcccChHHHHHHHHHcC---------CCCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccCC
Confidence 99999999999988888877664 225789999999998764422 2346667789999998853
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=182.03 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=159.4
Q ss_pred ceEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH--HHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 457 FQTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI--SRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 457 ~~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
...+.+++.|. +|.+++++ +.|++ .|+||++||+........|.. .+.+++++.|++|+++|.++++.|.
T Consensus 9 ~~~~~~~~~S~~~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~ 81 (280)
T 1r88_A 9 APYENLMVPSPSMGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYT 81 (280)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTS
T ss_pred CCEEEEEEECcccCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccC
Confidence 35677777775 68889998 77764 289999999853222222322 2346677789999999998765442
Q ss_pred chhhhccccccCCCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc-
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK- 610 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~- 610 (734)
+|..... ..+++++ ..+.++.++.-+++++++|+|+||||++++.++.++|++|+++|+.+|..++.....
T Consensus 82 -~~~~~~~-----~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~ 155 (280)
T 1r88_A 82 -NWEQDGS-----KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTN 155 (280)
T ss_dssp -BCSSCTT-----CBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHH
T ss_pred -CCCCCCC-----CcHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccch
Confidence 2222111 1333332 234444443447888999999999999999999999999999999999887543110
Q ss_pred c-------cc-CcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCc--cCCcEEEEe----cCCCCC-------CCChH
Q psy4818 611 F-------TI-AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNT--QYPATLVLT----GDHDDR-------VPPLH 669 (734)
Q Consensus 611 ~-------~~-~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~--~~P~~Li~~----g~~D~~-------v~~~~ 669 (734)
. .. +..+...||.+.. ..+.+.+|+.+++. . +-+|++|.+ |+.|.+ |++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~----~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~ 227 (280)
T 1r88_A 156 GAIAAGMQQFGGVDTNGMWGAPQL----GRWKWHDPWVHASL----LAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGN 227 (280)
T ss_dssp HHHHHHHHHHHCCCTHHHHCCGGG----STTGGGCTTTTHHH----HHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHH
T ss_pred hhHHHHhhhccccchhhhcCCCch----hhhHhcCHHHHHHh----hhccCCeEEEEeccCCCCCCcccccchhHHHHHH
Confidence 0 00 0011122444421 12446677766543 3 224599999 999985 68899
Q ss_pred HHHHHHHHHhhhCCCCCCC-CcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 670 SYKFIATLQEKIGSLPYQK-NPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 670 ~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+++++++|++. | .++++.++++++|.+.. ......+.+.||.+.|..
T Consensus 228 ~~~~~~~L~~~-------g~~~~~~~~~~~g~H~~~~----w~~~l~~~l~~~~~~~~~ 275 (280)
T 1r88_A 228 SRMFYNQYRSV-------GGHNGHFDFPASGDNGWGS----WAPQLGAMSGDIVGAIRH 275 (280)
T ss_dssp HHHHHHHHHHT-------TCCSEEEECCSSCCSSHHH----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHC-------CCcceEEEecCCCCcChhH----HHHHHHHHHHHHHHHHhh
Confidence 99999999998 8 99999999889997642 234455677888877653
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=202.55 Aligned_cols=254 Identities=13% Similarity=0.106 Sum_probs=165.0
Q ss_pred CCCCCceEEEEEE-----EcCCCcE--EeEEEEEeccccCCCCCcEEEEec--CCCCCc---------C-----------
Q psy4818 452 FEPTLFQTKQVYF-----RSKDGTR--VPMYIIHRVGALRNRRNPVIIYGY--GGYGVS---------V----------- 502 (734)
Q Consensus 452 ~~~~~~~~~~~~~-----~s~dg~~--i~~~~~~p~~~~~~~~~P~vv~~h--Gg~~~~---------~----------- 502 (734)
++......+.+++ +..||.+ |.+.+++|++ .++.|+||..| |+.+.. .
T Consensus 161 ~~~~~~~~e~~~ve~~v~~~~DG~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~ 237 (763)
T 1lns_A 161 FDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHE 237 (763)
T ss_dssp SCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEE
T ss_pred cCCccceeeeeEEecCcccCCCCCeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCccc
Confidence 3333444455555 3579999 9999999987 36899999554 332110 0
Q ss_pred ------------------------Ccccc----HHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHH
Q psy4818 503 ------------------------LPTFS----ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA 554 (734)
Q Consensus 503 ------------------------~~~~~----~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 554 (734)
...|. .....+++++||+|+++|+||.|+.+..+. .......+|+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~~-----~~~~~e~~D~~a 312 (763)
T 1lns_A 238 IHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTA 312 (763)
T ss_dssp CCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcCC-----CCCHHHHHHHHH
Confidence 01121 123466777899999999999776543321 122245789999
Q ss_pred HHHHHHHc--CC------------CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc----c--C
Q psy4818 555 AAEYMINK--KY------------TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT----I--A 614 (734)
Q Consensus 555 ~~~~l~~~--~~------------~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~----~--~ 614 (734)
+++||..+ ++ .+.+||+++|+||||++++.++.++|+.++++|+.+|+.|+....... . +
T Consensus 313 ~IdwL~~~~~~~~d~~~~~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g 392 (763)
T 1lns_A 313 VIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGG 392 (763)
T ss_dssp HHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTT
T ss_pred HHHHHhhcccccccccccccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhccc
Confidence 99999743 11 245799999999999999999999999999999999998765432110 0 0
Q ss_pred c-ccc------cccCCCCCH-------HH-------------------HHHHHhCCccCCCCCCCCCccCCcEEEEecCC
Q psy4818 615 Y-YSE------SEFGSPNNK-------TH-------------------FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH 661 (734)
Q Consensus 615 ~-~~~------~~~g~~~~~-------~~-------------------~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~ 661 (734)
. .+. ..+...... +. ...+...+|..++.+ +++| +||+||.+
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~----I~~P-vLii~G~~ 467 (763)
T 1lns_A 393 FPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDK----VKAD-VLIVHGLQ 467 (763)
T ss_dssp CTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGG----CCSE-EEEEEETT
T ss_pred CCchhhhHHhHHHHhhhcCcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhc----CCCC-EEEEEECC
Confidence 0 000 000000000 00 012234556666665 7888 99999999
Q ss_pred CCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 662 DDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 662 D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
|..|++.++.+++++|+. +.+..+++ +++||....... ..+....+.+||.++|+..
T Consensus 468 D~~vp~~~a~~l~~al~~--------~~~~~l~i-~~~gH~~~~~~~-~~~~~~~i~~Ffd~~Lkg~ 524 (763)
T 1lns_A 468 DWNVTPEQAYNFWKALPE--------GHAKHAFL-HRGAHIYMNSWQ-SIDFSETINAYFVAKLLDR 524 (763)
T ss_dssp CCSSCTHHHHHHHHHSCT--------TCCEEEEE-ESCSSCCCTTBS-SCCHHHHHHHHHHHHHTTC
T ss_pred CCCCChHHHHHHHHhhcc--------CCCeEEEE-eCCcccCccccc-hHHHHHHHHHHHHHHhcCC
Confidence 999999999999998863 23455555 567998643211 1345677899999999754
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=173.73 Aligned_cols=236 Identities=15% Similarity=0.166 Sum_probs=150.6
Q ss_pred eEEEEEE-EcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchh
Q psy4818 458 QTKQVYF-RSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 458 ~~~~~~~-~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~ 536 (734)
..+.+.+ .+.||.++....+.+++ ...|+||++||+.+....+.+. .+..+++++||.|+++|+||.|......
T Consensus 10 ~~~~~~~~~~~~g~~l~~~~~~~~~----~~~~~vv~~HG~~~~~~~~~~~-~~~~~l~~~g~~v~~~d~~G~G~s~~~~ 84 (270)
T 3llc_A 10 ETHAITVGQGSDARSIAALVRAPAQ----DERPTCIWLGGYRSDMTGTKAL-EMDDLAASLGVGAIRFDYSGHGASGGAF 84 (270)
T ss_dssp EEEEEEESSGGGCEEEEEEEECCSS----TTSCEEEEECCTTCCTTSHHHH-HHHHHHHHHTCEEEEECCTTSTTCCSCG
T ss_pred CcceEEEeeccCcceEEEEeccCCC----CCCCeEEEECCCccccccchHH-HHHHHHHhCCCcEEEeccccCCCCCCcc
Confidence 3444555 55689888777665432 2479999999986554433222 3456676679999999999976554222
Q ss_pred hhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc---CC---CceeEEEEcCCcchhccccc
Q psy4818 537 HNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ---RP---ELYGAALILVGALDMLRFNK 610 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~---~p---~~~~a~v~~~~~~d~~~~~~ 610 (734)
....++++...+..+++. +..++++++|+|+||++++.++.+ +| +.++++|+.+|..++.....
T Consensus 85 --------~~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~ 154 (270)
T 3llc_A 85 --------RDGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLI 154 (270)
T ss_dssp --------GGCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTT
T ss_pred --------ccccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhh
Confidence 123344444444433332 126789999999999999999999 99 89999999999877544210
Q ss_pred c-ccCcc----------c--ccccC-CC--CCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHH
Q psy4818 611 F-TIAYY----------S--ESEFG-SP--NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674 (734)
Q Consensus 611 ~-~~~~~----------~--~~~~g-~~--~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~ 674 (734)
. ..... + ...+. .+ ........+........+.. ++.| +|+++|++|..|++.++.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~v~~~~~~~~~ 229 (270)
T 3llc_A 155 EPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMID----TGCP-VHILQGMADPDVPYQHALKLV 229 (270)
T ss_dssp GGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCC----CCSC-EEEEEETTCSSSCHHHHHHHH
T ss_pred hhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhc----CCCC-EEEEecCCCCCCCHHHHHHHH
Confidence 0 00000 0 00111 11 11233344444444455554 6777 999999999999998888877
Q ss_pred HHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 675 ~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
+.+. +..+++++++++||.+..... ..+....+.+||.+
T Consensus 230 ~~~~---------~~~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 230 EHLP---------ADDVVLTLVRDGDHRLSRPQD-IDRMRNAIRAMIEP 268 (270)
T ss_dssp HTSC---------SSSEEEEEETTCCSSCCSHHH-HHHHHHHHHHHHC-
T ss_pred HhcC---------CCCeeEEEeCCCccccccccc-HHHHHHHHHHHhcC
Confidence 7653 335789999999997654433 23445556666643
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=183.07 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=135.2
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..+.||++||..++.. .|. .++..|+++||.|+++|+||.|........... ..-.+|+.+++++|.+.
T Consensus 49 G~~~~VlllHG~~~s~~--~~~-~la~~La~~Gy~Via~Dl~GhG~S~~~~~~~~~----~~~~~d~~~~~~~l~~~--- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGSPQ--SMR-FLAEGFARAGYTVATPRLTGHGTTPAEMAASTA----SDWTADIVAAMRWLEER--- 118 (281)
T ss_dssp CSSEEEEEECCTTCCGG--GGH-HHHHHHHHTTCEEEECCCTTSSSCHHHHHTCCH----HHHHHHHHHHHHHHHHH---
T ss_pred CCCceEEEECCCCCCHH--HHH-HHHHHHHHCCCEEEEECCCCCCCCCccccCCCH----HHHHHHHHHHHHHHHhC---
Confidence 45567889999655443 233 345778888999999999996644322111111 11256777788887654
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc----ccc-cCccc------------ccccCCCCCH-
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN----KFT-IAYYS------------ESEFGSPNNK- 627 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~----~~~-~~~~~------------~~~~g~~~~~- 627 (734)
.++++|+|+|+||++++.++.++|+.++++|+.+|...+.... .+. ....+ ..++..+..+
T Consensus 119 -~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
T 4fbl_A 119 -CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPV 197 (281)
T ss_dssp -CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEG
T ss_pred -CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCch
Confidence 3689999999999999999999999999999999876443210 000 00000 0011111000
Q ss_pred HHHHHHHhCCc--cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4818 628 THFHNLLSYSP--LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 628 ~~~~~~~~~sp--~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 705 (734)
.....+..... -..+.. +++| +||++|++|..||++++.++++++. +..+++++++++||....
T Consensus 198 ~~~~~~~~~~~~~~~~l~~----i~~P-~Lii~G~~D~~v~~~~~~~l~~~l~---------~~~~~l~~~~~~gH~~~~ 263 (281)
T 4fbl_A 198 PAIKHLITIGAVAEMLLPR----VKCP-ALIIQSREDHVVPPHNGELIYNGIG---------STEKELLWLENSYHVATL 263 (281)
T ss_dssp GGHHHHHHHHHHHHHHGGG----CCSC-EEEEEESSCSSSCTHHHHHHHHHCC---------CSSEEEEEESSCCSCGGG
T ss_pred HHHHHHHHhhhhccccccc----cCCC-EEEEEeCCCCCcCHHHHHHHHHhCC---------CCCcEEEEECCCCCcCcc
Confidence 00111100000 011222 6667 9999999999999999988888764 346789999999998654
Q ss_pred chHHhHHHHHHHHHHHHHH
Q psy4818 706 PLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 706 ~~~~~~~~~~~~~~fl~~~ 724 (734)
... ..+..+.+.+||.+|
T Consensus 264 e~~-~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 264 DND-KELILERSLAFIRKH 281 (281)
T ss_dssp STT-HHHHHHHHHHHHHTC
T ss_pred ccC-HHHHHHHHHHHHHhC
Confidence 322 235677889999875
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=178.21 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=145.6
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCC-cCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
...++..++..+.+.++.|++ ++.|+||++|||... .....|.. +...|+++||.|+++|+||++++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~~~~~~~~------ 108 (262)
T 2pbl_A 40 RLNLSYGEGDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSH-LAVGALSKGWAVAMPSYELCPEVR------ 108 (262)
T ss_dssp EEEEESSSSTTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGG-GGHHHHHTTEEEEEECCCCTTTSC------
T ss_pred ccccccCCCCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHH-HHHHHHhCCCEEEEeCCCCCCCCC------
Confidence 334444566677888888865 568999999997422 22223433 345666779999999999976532
Q ss_pred cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC------CCceeEEEEcCCcchhcccccccc
Q psy4818 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR------PELYGAALILVGALDMLRFNKFTI 613 (734)
Q Consensus 540 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~~~a~v~~~~~~d~~~~~~~~~ 613 (734)
.....+|+.++++++..+.. ++++|+|+|+||++++.++.++ |+.++++|+.+|+.++......
T Consensus 109 -----~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~-- 178 (262)
T 2pbl_A 109 -----ISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT-- 178 (262)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS--
T ss_pred -----hHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhh--
Confidence 11236789999999987643 7899999999999999999887 8899999999998876433221
Q ss_pred CcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEE
Q psy4818 614 AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLL 693 (734)
Q Consensus 614 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 693 (734)
.+...++. .. ..+...+|...+.. ++.| +|+++|++|..|++.++.+++++++ +++
T Consensus 179 --~~~~~~~~--~~---~~~~~~~~~~~~~~----~~~P-~lii~G~~D~~~~~~~~~~~~~~~~------------~~~ 234 (262)
T 2pbl_A 179 --SMNEKFKM--DA---DAAIAESPVEMQNR----YDAK-VTVWVGGAERPAFLDQAIWLVEAWD------------ADH 234 (262)
T ss_dssp --TTHHHHCC--CH---HHHHHTCGGGCCCC----CSCE-EEEEEETTSCHHHHHHHHHHHHHHT------------CEE
T ss_pred --hhhhhhCC--CH---HHHHhcCcccccCC----CCCC-EEEEEeCCCCcccHHHHHHHHHHhC------------CeE
Confidence 11111111 11 23456778777665 6666 9999999999999999999988875 378
Q ss_pred EEeCCCCCCCCCc
Q psy4818 694 RVEQDAGHGQGTP 706 (734)
Q Consensus 694 ~~~~~~gH~~~~~ 706 (734)
++++++||.....
T Consensus 235 ~~~~~~~H~~~~~ 247 (262)
T 2pbl_A 235 VIAFEKHHFNVIE 247 (262)
T ss_dssp EEETTCCTTTTTG
T ss_pred EEeCCCCcchHHh
Confidence 9999999987643
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=181.18 Aligned_cols=252 Identities=13% Similarity=0.085 Sum_probs=161.8
Q ss_pred CCCceEEEEEEEcCC--C--cEEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccc----cHHHHHHHH-hcCeEEEE
Q psy4818 454 PTLFQTKQVYFRSKD--G--TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTF----SISRCMFLR-HFNGIYAI 523 (734)
Q Consensus 454 ~~~~~~~~~~~~s~d--g--~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~----~~~~~~~l~-~~G~~v~~ 523 (734)
+......++.|.+.| | ..+.++++.|++. .++.|+|++.||..... ..+++ ...+...|+ ++||+|++
T Consensus 38 ~~~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~ 115 (377)
T 4ezi_A 38 HYDLQLYKINYKTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVM 115 (377)
T ss_dssp CCCEEEEEEEEEEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEE
T ss_pred CCCcEEEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEE
Confidence 445678899998876 4 4577999999873 46789999999976321 12221 112344455 78999999
Q ss_pred EecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHhcCC----C-ceeEEE
Q psy4818 524 PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLNQRP----E-LYGAAL 597 (734)
Q Consensus 524 ~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p----~-~~~a~v 597 (734)
+|+||.|+.+...+...........+.|.+.++..+.+. +..+.+|++++|+|+||+++++++.+.| + .+++++
T Consensus 116 ~D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~ 195 (377)
T 4ezi_A 116 PDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVA 195 (377)
T ss_dssp ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEE
T ss_pred eCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEE
Confidence 999997766531111000011112344555555544443 5557789999999999999999987654 3 578999
Q ss_pred EcCCcchhccccccccC------ccc-----------ccccC------CCC-----------------------------
Q psy4818 598 ILVGALDMLRFNKFTIA------YYS-----------ESEFG------SPN----------------------------- 625 (734)
Q Consensus 598 ~~~~~~d~~~~~~~~~~------~~~-----------~~~~g------~~~----------------------------- 625 (734)
+.++..|+........+ ..+ ...|. ++.
T Consensus 196 ~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (377)
T 4ezi_A 196 PGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLI 275 (377)
T ss_dssp EESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGG
T ss_pred ecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHH
Confidence 99988776533211000 000 00000 000
Q ss_pred -------------CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 626 -------------NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 626 -------------~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
++...+.+.+.+... . ..+.| +||+||.+|.+||+.++.++++++++. |. ++
T Consensus 276 ~~~~~~~~~~~~~~p~~~~~l~~~~~~~---~---~~~~P-vli~hG~~D~~Vp~~~~~~l~~~l~~~-------G~-v~ 340 (377)
T 4ezi_A 276 FQPKFSNGIISKTDRNTEILKINFNHYD---F---KPTAP-LLLVGTKGDRDVPYAGAEMAYHSFRKY-------SD-FV 340 (377)
T ss_dssp BCHHHHHHHHTTCSTTHHHHHHHHCCCC---S---CCSSC-EEEEECTTCSSSCHHHHHHHHHHHHTT-------CS-CE
T ss_pred hchhhhhhcccccchHHHHHHHHhcccC---C---CCCCC-EEEEecCCCCCCCHHHHHHHHHHHHhc-------CC-EE
Confidence 000011111111111 1 14566 999999999999999999999999988 88 99
Q ss_pred EEEeCC--CCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 693 LRVEQD--AGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 693 ~~~~~~--~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
++.|++ .+|.... .....+++.||.++++.
T Consensus 341 ~~~~~~~~~~H~~~~-----~~~~~~~~~wl~~~~~~ 372 (377)
T 4ezi_A 341 WIKSVSDALDHVQAH-----PFVLKEQVDFFKQFERQ 372 (377)
T ss_dssp EEEESCSSCCTTTTH-----HHHHHHHHHHHHHHHTS
T ss_pred EEEcCCCCCCccChH-----HHHHHHHHHHHHHhhcc
Confidence 999999 9998642 35567789999999874
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=186.59 Aligned_cols=235 Identities=12% Similarity=0.041 Sum_probs=158.6
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
....+++.++. +|..|+++++.|.+ .++.|+||++||..+.... .+ ..+...++++||.|+++|+||.|+...
T Consensus 165 ~~~~~~v~i~~-~g~~l~~~~~~P~~---~~~~P~vv~~hG~~~~~~~-~~-~~~~~~l~~~G~~V~~~D~~G~G~s~~- 237 (415)
T 3mve_A 165 KYIIKQLEIPF-EKGKITAHLHLTNT---DKPHPVVIVSAGLDSLQTD-MW-RLFRDHLAKHDIAMLTVDMPSVGYSSK- 237 (415)
T ss_dssp SSEEEEEEEEC-SSSEEEEEEEESCS---SSCEEEEEEECCTTSCGGG-GH-HHHHHTTGGGTCEEEEECCTTSGGGTT-
T ss_pred CCCeEEEEEEE-CCEEEEEEEEecCC---CCCCCEEEEECCCCccHHH-HH-HHHHHHHHhCCCEEEEECCCCCCCCCC-
Confidence 34678888887 78899999999976 4678999999997544322 22 224456666799999999999654321
Q ss_pred hhhccccccCCCchhH-HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc---c
Q psy4818 536 WHNAGRLLKKQNCFDD-FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK---F 611 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~ 611 (734)
. ....++++ ..++++++.....+|++||+|+|+|+||++++.++.++|+.++++|+.+|+++...... .
T Consensus 238 --~-----~~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~ 310 (415)
T 3mve_A 238 --Y-----PLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQ 310 (415)
T ss_dssp --S-----CCCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHT
T ss_pred --C-----CCCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHH
Confidence 1 11122333 35678888877778999999999999999999999988999999999999864321100 0
Q ss_pred ccCcc----cccccCCC-CC-HHHHHHHHhCCccCC----CCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q psy4818 612 TIAYY----SESEFGSP-NN-KTHFHNLLSYSPLHN----IKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681 (734)
Q Consensus 612 ~~~~~----~~~~~g~~-~~-~~~~~~~~~~sp~~~----~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~ 681 (734)
..... +...+|.. .. .+....+..+++... +.. +++| +||++|++|..||+.++..+++ .
T Consensus 311 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-vLii~G~~D~~vp~~~~~~l~~----~- 380 (415)
T 3mve_A 311 QMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRK----TKVP-ILAMSLEGDPVSPYSDNQMVAF----F- 380 (415)
T ss_dssp TSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSC----BSSC-EEEEEETTCSSSCHHHHHHHHH----T-
T ss_pred HhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCC----CCCC-EEEEEeCCCCCCCHHHHHHHHH----h-
Confidence 00000 00112322 12 222334445555432 222 6777 9999999999999988876665 3
Q ss_pred CCCCCCCCcEEEEEeCC-CCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 682 GSLPYQKNPLLLRVEQD-AGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 682 ~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+.+++++++++ .+|. ...+....+.+||.++|.
T Consensus 381 ------~~~~~l~~i~g~~~h~------~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 381 ------STYGKAKKISSKTITQ------GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp ------BTTCEEEEECCCSHHH------HHHHHHHHHHHHHHHHHT
T ss_pred ------CCCceEEEecCCCccc------chHHHHHHHHHHHHHHhc
Confidence 55678899998 2221 224667788999999875
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=181.82 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=148.5
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchh
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFD 550 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~ 550 (734)
+.++++.|.+ ++.|+||++|||.... ....|......+..+.||.|+++||||+++.. + ...++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~--~---------~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFH--I---------DDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSC--H---------HHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCC--c---------hHHHH
Confidence 6677788764 4579999999985332 22333333333333459999999999976532 1 12378
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc----eeEEEEcCCcchhccccccccCcccccccCCCCC
Q psy4818 551 DFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL----YGAALILVGALDMLRFNKFTIAYYSESEFGSPNN 626 (734)
Q Consensus 551 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~----~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~ 626 (734)
|+.+++++|.++ +++++++|+|+|+||++++.++.++|+. ++++|+.+|+.++.......... . ........
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~-~-~~~~~~~~ 224 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDA-L-IEQDAVLS 224 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHH-H-HHHCSSCC
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhh-h-cccCcccC
Confidence 999999999887 7889999999999999999999887765 89999999988764321110000 0 00000001
Q ss_pred HHHHH----HHH--------hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEE
Q psy4818 627 KTHFH----NLL--------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLR 694 (734)
Q Consensus 627 ~~~~~----~~~--------~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 694 (734)
..... .+. ..+|+...- ...||+||++|++|. +..++.+++++|++. +.+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~P~lii~G~~D~--~~~~~~~~~~~l~~~-------~~~~~~~ 290 (326)
T 3d7r_A 225 QFGVNEIMKKWANGLPLTDKRISPINGTI-----EGLPPVYMFGGGREM--THPDMKLFEQMMLQH-------HQYIEFY 290 (326)
T ss_dssp HHHHHHHHHHHHTTSCTTSTTTSGGGSCC-----TTCCCEEEEEETTST--THHHHHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCCeECcccCCc-----ccCCCEEEEEeCccc--chHHHHHHHHHHHHC-------CCcEEEE
Confidence 11111 111 123332211 234569999999995 456788899999988 8899999
Q ss_pred EeCCCCCCCCCc-hHHhHHHHHHHHHHHHHHcC
Q psy4818 695 VEQDAGHGQGTP-LMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 695 ~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~ 726 (734)
+++++||.+... .....+....+.+||.+++.
T Consensus 291 ~~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 291 DYPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp EETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred EeCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 999999987541 12235677788999987764
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-18 Score=167.40 Aligned_cols=217 Identities=16% Similarity=0.060 Sum_probs=151.0
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcc------
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAG------ 540 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~------ 540 (734)
.+| +++.++.|.+ +.|+||++||..+... .|. .+...|+++||.|+++|+||.|.....+....
T Consensus 10 ~~g--~~~~~~~~~~-----~~~~vv~~hG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~ 79 (238)
T 1ufo_A 10 LAG--LSVLARIPEA-----PKALLLALHGLQGSKE--HIL-ALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVE 79 (238)
T ss_dssp ETT--EEEEEEEESS-----CCEEEEEECCTTCCHH--HHH-HTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHH
T ss_pred cCC--EEEEEEecCC-----CccEEEEECCCcccch--HHH-HHHHHHHhCCCEEEEecCCCCccCCCCCCcccccchhh
Confidence 355 5566777754 6799999999865432 222 23345666799999999999665432211110
Q ss_pred -ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCccccc
Q psy4818 541 -RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSES 619 (734)
Q Consensus 541 -~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 619 (734)
.........+|+.++++++.+.+. ++++++|+|+||.+++.++.++|+.++++++..+..... ... .
T Consensus 80 ~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~-~~~--------~ 147 (238)
T 1ufo_A 80 EVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMK-LPQ--------G 147 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCC-CCT--------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccch-hhh--------h
Confidence 000011235788888888876654 789999999999999999999999888888776643211 100 0
Q ss_pred ccCCCCCHHHHHHHHhCCccCCCCCCCCCc-cCCcEEEEecCCCCCCCChHHHHHHHHHH-hhhCCCCCCCC-cEEEEEe
Q psy4818 620 EFGSPNNKTHFHNLLSYSPLHNIKVPPNNT-QYPATLVLTGDHDDRVPPLHSYKFIATLQ-EKIGSLPYQKN-PLLLRVE 696 (734)
Q Consensus 620 ~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~-~~P~~Li~~g~~D~~v~~~~~~~~~~~L~-~~~~~~~~~~~-~~~~~~~ 696 (734)
.+..| +....+..+++...+.. + +.| +|+++|++|..|++.++.++++.++ +. +. +++++++
T Consensus 148 ~~~~~---~~~~~~~~~~~~~~~~~----~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 212 (238)
T 1ufo_A 148 QVVED---PGVLALYQAPPATRGEA----YGGVP-LLHLHGSRDHIVPLARMEKTLEALRPHY-------PEGRLARFVE 212 (238)
T ss_dssp CCCCC---HHHHHHHHSCGGGCGGG----GTTCC-EEEEEETTCTTTTHHHHHHHHHHHGGGC-------TTCCEEEEEE
T ss_pred hccCC---cccchhhcCChhhhhhh----ccCCc-EEEEECCCCCccCcHHHHHHHHHHhhcC-------CCCceEEEEe
Confidence 01222 22455666777776664 5 666 9999999999999999999999998 66 66 7899999
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 697 QDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 697 ~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+++||.+.. +....+.+||.++|+
T Consensus 213 ~~~~H~~~~------~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 213 EGAGHTLTP------LMARVGLAFLEHWLE 236 (238)
T ss_dssp TTCCSSCCH------HHHHHHHHHHHHHHH
T ss_pred CCCCcccHH------HHHHHHHHHHHHHHh
Confidence 999998742 445567899988874
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=167.69 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=132.1
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc--------ccc--ccCCCchhHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA--------GRL--LKKQNCFDDFQA 554 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~--------~~~--~~~~~~~~D~~~ 554 (734)
+++.| ||++||..+.... |. .+...|+ .|+.|+.+|.++....+..|+.. +.. .......+++.+
T Consensus 14 ~~~~p-vv~lHG~g~~~~~--~~-~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~ 88 (209)
T 3og9_A 14 KDLAP-LLLLHSTGGDEHQ--LV-EIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTD 88 (209)
T ss_dssp TTSCC-EEEECCTTCCTTT--TH-HHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEeCCCCCHHH--HH-HHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHH
Confidence 35678 9999997554432 33 3446666 59999999976543334555541 000 001123455556
Q ss_pred HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHH
Q psy4818 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLL 634 (734)
Q Consensus 555 ~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 634 (734)
.++.+.++..+|+++++|+|+|+||++++.++.++|+.++++|+.+|.......
T Consensus 89 ~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------------------------- 142 (209)
T 3og9_A 89 EVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFE-------------------------- 142 (209)
T ss_dssp HHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCC--------------------------
T ss_pred HHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCccc--------------------------
Confidence 666666665678999999999999999999999999999999999886531100
Q ss_pred hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHH
Q psy4818 635 SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEM 714 (734)
Q Consensus 635 ~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 714 (734)
..... ...| +|++||++|+.||++++.++++.|++. +.++++.+++ +||.+. .+..
T Consensus 143 -----~~~~~----~~~p-~li~~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~~-~gH~~~------~~~~ 198 (209)
T 3og9_A 143 -----QTVQL----DDKH-VFLSYAPNDMIVPQKNFGDLKGDLEDS-------GCQLEIYESS-LGHQLT------QEEV 198 (209)
T ss_dssp -----CCCCC----TTCE-EEEEECTTCSSSCHHHHHHHHHHHHHT-------TCEEEEEECS-STTSCC------HHHH
T ss_pred -----ccccc----cCCC-EEEEcCCCCCccCHHHHHHHHHHHHHc-------CCceEEEEcC-CCCcCC------HHHH
Confidence 00111 3444 999999999999999999999999998 8899999998 799984 2445
Q ss_pred HHHHHHHHHH
Q psy4818 715 TDIYVFLMKS 724 (734)
Q Consensus 715 ~~~~~fl~~~ 724 (734)
..+.+||.++
T Consensus 199 ~~~~~~l~~~ 208 (209)
T 3og9_A 199 LAAKKWLTET 208 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6678898764
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-18 Score=173.24 Aligned_cols=228 Identities=14% Similarity=0.141 Sum_probs=148.3
Q ss_pred EEEEEEE---cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 459 TKQVYFR---SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 459 ~~~~~~~---s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
...+.|. +.+|.++.++++.|++. ..+.|+||++||+.+... .|...+...++++||+|+++|+|+.+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~ 99 (304)
T 3d0k_A 24 RNAIPYLDDDRNADRPFTLNTYRPYGY--TPDRPVVVVQHGVLRNGA--DYRDFWIPAADRHKLLIVAPTFSDEIWPGVE 99 (304)
T ss_dssp EEEEEECC---CTTCCEEEEEEECTTC--CTTSCEEEEECCTTCCHH--HHHHHTHHHHHHHTCEEEEEECCTTTSCHHH
T ss_pred CceEEecccCCCCCceEEEEEEeCCCC--CCCCcEEEEeCCCCCCHH--HHHHHHHHHHHHCCcEEEEeCCccccCCCcc
Confidence 3456666 67888999999999864 246799999999866542 2322345667778999999999965221111
Q ss_pred hhhccc--------cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC-ceeEEEEc-CCcchh
Q psy4818 536 WHNAGR--------LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE-LYGAALIL-VGALDM 605 (734)
Q Consensus 536 ~~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~-~~~~d~ 605 (734)
|+..+. .......++|+.+++++|.++..+|++||+|+|+|+||++++.++.++|+ .++++|+. .|+.++
T Consensus 100 ~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~ 179 (304)
T 3d0k_A 100 SYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTL 179 (304)
T ss_dssp HTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCC
T ss_pred ccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCccccc
Confidence 221111 01123456889999999998877899999999999999999999999995 67777744 476554
Q ss_pred ccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCC-----------------Ch
Q psy4818 606 LRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVP-----------------PL 668 (734)
Q Consensus 606 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~-----------------~~ 668 (734)
.... ..| .+|..... .+|...... ...| +|++||++|..+. ..
T Consensus 180 ~~~~-----~~~--~~~~~~~~--------~~~~~~~~~----~~~p-~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~ 239 (304)
T 3d0k_A 180 PTFE-----HRF--PEGLDGVG--------LTEDHLARL----LAYP-MTILAGDQDIATDDPNLPSEPAALRQGPHRYA 239 (304)
T ss_dssp SSTT-----SBT--TTSSBTTT--------CCHHHHHHH----HHSC-CEEEEETTCCCC--CCSCCSHHHHTTCSSHHH
T ss_pred CCcc-----ccC--ccccCCCC--------CCHHHHHhh----hcCC-EEEEEeCCCCCccccccccChhhhccCccHHH
Confidence 3221 011 11211100 011111111 3344 9999999998752 23
Q ss_pred HHHHHHHHHH----hhhCCCCCCCCc--EEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 669 HSYKFIATLQ----EKIGSLPYQKNP--LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 669 ~~~~~~~~L~----~~~~~~~~~~~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
.+..+++.++ +. |.+ ++++++|++||.+. .....+.+||.+.
T Consensus 240 ~~~~~~~~l~~~a~~~-------g~~~~~~~~~~pg~gH~~~-------~~~~~~~~~~~~~ 287 (304)
T 3d0k_A 240 RARHYYEAGQRAAAQR-------GLPFGWQLQVVPGIGHDGQ-------AMSQVCASLWFDG 287 (304)
T ss_dssp HHHHHHHHHHHHHHHH-------TCCCCCEEEEETTCCSCHH-------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhc-------CCCcceEEEEeCCCCCchH-------HHHHHHHHHHhhh
Confidence 5667777776 55 666 89999999999873 2234466776543
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-19 Score=179.27 Aligned_cols=231 Identities=12% Similarity=0.054 Sum_probs=149.7
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcC---eEEEEEecccCCCCC
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN---GIYAIPNIRGGGELG 533 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G---~~v~~~~~rG~~~~g 533 (734)
..+.+.+.|. +|..+.++++.|+++++++++|+|+++||+........+......+.++.| ++|+.+++|+++.++
T Consensus 17 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~~ 96 (275)
T 2qm0_A 17 NTEQWKMYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFS 96 (275)
T ss_dssp TEEEEEEECTTTCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSCC
T ss_pred CceEEEEEecCCCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcCc
Confidence 4778888887 788999999999998767889999999998532111111111111223457 999999999865443
Q ss_pred ch-----hhhc---------ccc----ccC-CCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc
Q psy4818 534 ED-----WHNA---------GRL----LKK-QNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL 592 (734)
Q Consensus 534 ~~-----~~~~---------~~~----~~~-~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~ 592 (734)
.. +... ... ..+ ...+.+++ ..+.++.++..+|++|++|+|+|+||++++.++.++|++
T Consensus 97 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~~ 176 (275)
T 2qm0_A 97 GEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNA 176 (275)
T ss_dssp HHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGGG
T ss_pred ccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCchh
Confidence 21 1100 000 001 11344443 244555555557899999999999999999999999999
Q ss_pred eeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHH
Q psy4818 593 YGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYK 672 (734)
Q Consensus 593 ~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~ 672 (734)
|+++++.+|.+.+..... .. ..+.+ +...+ ... ... +++|+||+.|..+++.++.+
T Consensus 177 f~~~~~~s~~~~~~~~~~--------~~-----~~~~~--~~~~~----~~~----~~~-~~~l~~G~~D~~~~~~~~~~ 232 (275)
T 2qm0_A 177 FQNYFISSPSIWWNNKSV--------LE-----KEENL--IIELN----NAK----FET-GVFLTVGSLEREHMVVGANE 232 (275)
T ss_dssp CSEEEEESCCTTHHHHGG--------GG-----GTTHH--HHHHH----TCS----SCE-EEEEEEETTSCHHHHHHHHH
T ss_pred hceeEEeCceeeeChHHH--------HH-----HHHHH--Hhhhc----ccC----CCc-eEEEEeCCcccchhhHHHHH
Confidence 999999999875432100 00 00111 11100 111 233 49999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 673 FIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 673 ~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
++++|++. ...|.++++.++++++|+... .....+.+.||
T Consensus 233 ~~~~L~~~----~~~g~~~~~~~~~g~~H~~~~-----~~~l~~~l~~l 272 (275)
T 2qm0_A 233 LSERLLQV----NHDKLKFKFYEAEGENHASVV-----PTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHHC----CCTTEEEEEEEETTCCTTTHH-----HHHHHHHHHHH
T ss_pred HHHHHHhc----ccCCceEEEEECCCCCccccH-----HHHHHHHHHHH
Confidence 99999532 112889999999999997532 23334456665
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=183.56 Aligned_cols=208 Identities=12% Similarity=0.065 Sum_probs=137.2
Q ss_pred CCCCcEEEEecCCCCCc---CCccccHHHHHHH----HhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVS---VLPTFSISRCMFL----RHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAE 557 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l----~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~ 557 (734)
.++.|+||++|||.... ....|.. +...| ++.||.|+++|+|++++.. ....++|+.++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~-~~~~L~~~a~~~g~~vi~~d~r~~~~~~-----------~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQ-LANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNIT 105 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHH-HHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHH-HHHHHhhhhccCCcEEEEeecccCCCCC-----------CCcHHHHHHHHHH
Confidence 45789999999975332 2223433 44555 4679999999999865422 1234689999999
Q ss_pred HHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-----------------CCceeEEEEcCCcchhccccccccCc-ccc-
Q psy4818 558 YMINKKYTKPKYITIMGGSNGGLLVGACLNQR-----------------PELYGAALILVGALDMLRFNKFTIAY-YSE- 618 (734)
Q Consensus 558 ~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-----------------p~~~~a~v~~~~~~d~~~~~~~~~~~-~~~- 618 (734)
++.++ .++++++|+|+|+||++++.++.++ |+.++++|+.+|+.++.......... .+.
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 183 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 183 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHH
Confidence 99887 5778999999999999999999885 78899999999987764332100000 000
Q ss_pred cccCCCCCHHHHH-HHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC
Q psy4818 619 SEFGSPNNKTHFH-NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697 (734)
Q Consensus 619 ~~~g~~~~~~~~~-~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 697 (734)
..++.. .+.+. .....+|+.....+ .+..| +||++|++|..||+.++.+++++|+.. +.++++++++
T Consensus 184 ~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------~~~~~~~~~~ 251 (273)
T 1vkh_A 184 LAFPDG--IQMYEEEPSRVMPYVKKALS--RFSID-MHLVHSYSDELLTLRQTNCLISCLQDY-------QLSFKLYLDD 251 (273)
T ss_dssp HHCTTC--GGGCCCCHHHHHHHHHHHHH--HHTCE-EEEEEETTCSSCCTHHHHHHHHHHHHT-------TCCEEEEEEC
T ss_pred HHhccc--ccchhhcccccChhhhhccc--ccCCC-EEEEecCCcCCCChHHHHHHHHHHHhc-------CCceEEEEeC
Confidence 001110 00000 00011111000000 02334 999999999999999999999999988 8899999999
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 698 DAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 698 ~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
++||.+.... .+....+.+||
T Consensus 252 ~~gH~~~~~~---~~~~~~i~~fl 272 (273)
T 1vkh_A 252 LGLHNDVYKN---GKVAKYIFDNI 272 (273)
T ss_dssp CCSGGGGGGC---HHHHHHHHHTC
T ss_pred CCcccccccC---hHHHHHHHHHc
Confidence 9999864332 24455555554
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=173.52 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=142.3
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhc--CeEEEEEecc---cCCCCCchhhhcccc
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPNIR---GGGELGEDWHNAGRL 542 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~r---G~~~~g~~~~~~~~~ 542 (734)
.+.+...+..+|.. ++++.|+||++||..+... .|.. +.+.|..+ ++.+++|+-+ ...++|..|+.....
T Consensus 48 ~~~~~l~y~~~p~~--~~~~~plVI~LHG~G~~~~--~~~~-~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~ 122 (285)
T 4fhz_A 48 IMTRKLTFGRRGAA--PGEATSLVVFLHGYGADGA--DLLG-LAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWL 122 (285)
T ss_dssp CCCCCCCEEEEESC--TTCCSEEEEEECCTTBCHH--HHHT-THHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHH
T ss_pred cccccceeecCCCC--CCCCCcEEEEEcCCCCCHH--HHHH-HHHHHHHhCCCeEEEecCCCcccccCCCcccccccccc
Confidence 34444445555554 5678999999999532221 1211 22334333 8889988743 233467778642111
Q ss_pred cc--C-------CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccccc
Q psy4818 543 LK--K-------QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI 613 (734)
Q Consensus 543 ~~--~-------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~ 613 (734)
.. . ....+++.+.++.++++.-+|++||+|+|+|+||++++.++.++|+.|+++|+.+|.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~-------- 194 (285)
T 4fhz_A 123 DGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA-------- 194 (285)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC--------
T ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC--------
Confidence 10 0 112345556667766666689999999999999999999999999999999988764310
Q ss_pred CcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEE
Q psy4818 614 AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLL 693 (734)
Q Consensus 614 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 693 (734)
++..... .+ .+.| +|++||+.|++||+.++.+++++|+++ |.++++
T Consensus 195 -------------~~~~~~~------~~-------~~~P-vl~~hG~~D~~Vp~~~~~~~~~~L~~~-------g~~~~~ 240 (285)
T 4fhz_A 195 -------------PERLAEE------AR-------SKPP-VLLVHGDADPVVPFADMSLAGEALAEA-------GFTTYG 240 (285)
T ss_dssp -------------HHHHHHH------CC-------CCCC-EEEEEETTCSSSCTHHHHHHHHHHHHT-------TCCEEE
T ss_pred -------------chhhhhh------hh-------hcCc-ccceeeCCCCCcCHHHHHHHHHHHHHC-------CCCEEE
Confidence 1111000 01 2334 999999999999999999999999999 999999
Q ss_pred EEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 694 RVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 694 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
++|++.||++. .++..++.+||.++|-
T Consensus 241 ~~y~g~gH~i~------~~~l~~~~~fL~~~Lp 267 (285)
T 4fhz_A 241 HVMKGTGHGIA------PDGLSVALAFLKERLP 267 (285)
T ss_dssp EEETTCCSSCC------HHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCCC------HHHHHHHHHHHHHHCc
Confidence 99999999874 2446678999999984
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-17 Score=172.72 Aligned_cols=261 Identities=10% Similarity=-0.014 Sum_probs=163.5
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccccc-CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKF-PSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~-~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.++|||||++|||..+.+|. .+||++|+++|+..+.+...... ..+.|||||+.|+|...+
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~---------------- 101 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG---------------- 101 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT----------------
T ss_pred CccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC----------------
Confidence 38899999999999986554 68999999999876554333221 367999999999998842
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecC------------------CCCceEEEEeCCCCC
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNN------------------TQGSDLHYFDLHSLP 286 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~------------------~~~~~i~~~d~~~~~ 286 (734)
..|+++++.++.. ..++..+...........+|||+.++...... .....|+++|+.++.
T Consensus 102 ~~l~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 102 RNLMRVDLATLEE--NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TEEEEEETTTCCE--EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CeEEEEECCCCcc--eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 2799999988753 34555443211112234599999988543211 122689999998842
Q ss_pred CCcccCCCCceeeeccccceEE-EEEe-cCCeEEEEeCCCC--CCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-e
Q psy4818 287 DGKISGKFPLKTVIPGMDHHHE-IIAN-NGPELIVKTTKNA--PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-V 361 (734)
Q Consensus 287 ~~~l~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 361 (734)
...+......... .|+| ||++|+|.++... ...+|+.++++++. .+.++.......+....+ +
T Consensus 180 ---------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~sp 247 (388)
T 3pe7_A 180 ---------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVP 247 (388)
T ss_dssp ---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECT
T ss_pred ---------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECC
Confidence 2334433222223 3999 9999999887431 24579999998765 455555442233333344 4
Q ss_pred eCCEEEEEEEeCCce--eEEEEECCCCceeeeeCCCCc--e----EEeeccCcccceEEEEEec-----CCCCceEEEEe
Q psy4818 362 ANNKLIVHYIQNVRS--VMDLHDLNTGKRLHSFPLDLG--Q----ITHISGRRKYNEVFYGFTS-----FLQPGTIYHCN 428 (734)
Q Consensus 362 ~~~~l~~~~~~~~~~--~l~~~dl~~g~~~~~l~~~~g--~----v~~~~~~~d~~~l~~~~ss-----~~~P~~~~~~d 428 (734)
+++.|++....++.. .|++||+++|+. +.+....+ . .....++||++.+++..+. ......||++|
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 545687777666654 499999988875 33321111 1 1122467899888876532 24456899999
Q ss_pred CCCCcCCCCCCceeEEee
Q psy4818 429 IPENITDQDDFKPTIFRE 446 (734)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~ 446 (734)
+ +++ +.+.+..
T Consensus 327 ~-----~~~--~~~~l~~ 337 (388)
T 3pe7_A 327 M-----KNG--TQHRVAR 337 (388)
T ss_dssp T-----TTT--EEEEEEE
T ss_pred c-----cCC--ceEEecc
Confidence 9 555 4455544
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-18 Score=165.89 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=137.9
Q ss_pred EEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCC------Cchhhh-ccc---cccC
Q psy4818 476 IIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGEL------GEDWHN-AGR---LLKK 545 (734)
Q Consensus 476 ~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~------g~~~~~-~~~---~~~~ 545 (734)
++.|+. .++.|+||++||..+... .|. .+...|+++||.|+++|.+|.+.. ...|++ .+. ....
T Consensus 14 ~~~p~~---~~~~~~vv~lHG~~~~~~--~~~-~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~ 87 (232)
T 1fj2_A 14 AIVPAA---RKATAAVIFLHGLGDTGH--GWA-EAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQED 87 (232)
T ss_dssp EEECCS---SCCSEEEEEECCSSSCHH--HHH-HHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBC
T ss_pred cccCCC---CCCCceEEEEecCCCccc--hHH-HHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccc
Confidence 556654 467899999999865432 232 234556656999999955541100 000100 000 0001
Q ss_pred ----CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCccccccc
Q psy4818 546 ----QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621 (734)
Q Consensus 546 ----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 621 (734)
....+|+.++++++.+ ..+|+++++++|+|+||++++.++.++|+.++++|+.+|..+......
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~----------- 155 (232)
T 1fj2_A 88 ESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP----------- 155 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC-----------
T ss_pred cHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCcccc-----------
Confidence 1123555666666655 456889999999999999999999999999999999999775432110
Q ss_pred CCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCc--EEEEEeCCC
Q psy4818 622 GSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP--LLLRVEQDA 699 (734)
Q Consensus 622 g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~--~~~~~~~~~ 699 (734)
. ....... ++.| +|+++|++|..|++.++.++++.|++. +.+ +++++++++
T Consensus 156 ---~------------~~~~~~~----~~~P-~l~i~G~~D~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~ 208 (232)
T 1fj2_A 156 ---Q------------GPIGGAN----RDIS-ILQCHGDCDPLVPLMFGSLTVEKLKTL-------VNPANVTFKTYEGM 208 (232)
T ss_dssp ---S------------SCCCSTT----TTCC-EEEEEETTCSSSCHHHHHHHHHHHHHH-------SCGGGEEEEEETTC
T ss_pred ---c------------ccccccc----CCCC-EEEEecCCCccCCHHHHHHHHHHHHHh-------CCCCceEEEEeCCC
Confidence 0 0011222 4556 999999999999999999999999988 644 999999999
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 700 GHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
||.+. .+....+.+||.++|..
T Consensus 209 ~H~~~------~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 209 MHSSC------QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp CSSCC------HHHHHHHHHHHHHHSCC
T ss_pred CcccC------HHHHHHHHHHHHHhcCC
Confidence 99983 24457789999999864
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=171.07 Aligned_cols=237 Identities=15% Similarity=0.114 Sum_probs=156.1
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
.+.+.||.+|.+.++.|.+ ++.|+||++||..+... .|.. +...|+++||.|+++|+||.|..... ....
T Consensus 21 ~~~~~~g~~l~~~~~~~~~----~~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~~---~~~~ 90 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG----TPKALIFVSHGAGEHSG--RYEE-LARMLMGLDLLVFAHDHVGHGQSEGE---RMVV 90 (303)
T ss_dssp EEECTTSCEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGHH-HHHHHHHTTEEEEEECCTTSTTSCSS---TTCC
T ss_pred eEecCCCeEEEEEEeccCC----CCCeEEEEECCCCchhh--HHHH-HHHHHHhCCCcEEEeCCCCCCCCCCC---CCCC
Confidence 5778899999999988764 56899999999765543 3433 45667777999999999996654321 1001
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-------------
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN------------- 609 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~------------- 609 (734)
..-....+|+.++++++..+ .+.++++++|+|+||++++.++.++|++++++|+.+|........
T Consensus 91 ~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
T 3pe6_A 91 SDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLN 168 (303)
T ss_dssp SSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHH
Confidence 11122367888888888765 345689999999999999999999999999999999976542110
Q ss_pred ---ccccCcccccccCCCCCHHHHHHHHhCCcc----------------------CCCCCCCCCccCCcEEEEecCCCCC
Q psy4818 610 ---KFTIAYYSESEFGSPNNKTHFHNLLSYSPL----------------------HNIKVPPNNTQYPATLVLTGDHDDR 664 (734)
Q Consensus 610 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~----------------------~~~~~p~~~~~~P~~Li~~g~~D~~ 664 (734)
...........+. .........+.. .+. ..+.. ++.| +|+++|++|..
T Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~l~i~g~~D~~ 241 (303)
T 3pe6_A 169 SVLPNLSSGPIDSSVL-SRNKTEVDIYNS-DPLICRAGLKVCFGIQLLNAVSRVERALPK----LTVP-FLLLQGSADRL 241 (303)
T ss_dssp TTCCSCCCCCCCGGGT-CSCHHHHHHHHT-CTTSCCSCCCHHHHHHHHHHHHHHHHHGGG----CCSC-EEEEEETTCSS
T ss_pred HhcccccCCccchhhh-hcchhHHHHhcc-CccccccchhhhhHHHHHHHHHHHHHHhhc----CCCC-EEEEeeCCCCC
Confidence 0000000000000 011111111111 111 11222 5666 99999999999
Q ss_pred CCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-HhHHHHHHHHHHHHHHcCC
Q psy4818 665 VPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-KSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 665 v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~l~~ 727 (734)
|++..+.++++.+. +..+++++++++||.+..... ...+....+++||.+++..
T Consensus 242 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 242 CDSKGAYLLMELAK---------SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp BCHHHHHHHHHHCC---------CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred CChHHHHHHHHhcc---------cCCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 99988888877664 225788999999998764432 2346677789999998864
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-18 Score=186.90 Aligned_cols=241 Identities=14% Similarity=0.087 Sum_probs=162.8
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccc---------------------cHHHHHHHHh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTF---------------------SISRCMFLRH 516 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~---------------------~~~~~~~l~~ 516 (734)
..+.+.++..||.+|.+.+++|++ .++.|+||..||. +....+.+ .....++|++
T Consensus 40 ~~~~v~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~py-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~ 115 (560)
T 3iii_A 40 MEKDGTVEMRDGEKLYINIFRPNK---DGKFPVVMSADTY-GKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVP 115 (560)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSS---SSCEEEEEEEESS-CTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHGG
T ss_pred EEEEEEEECCCCcEEEEEEEecCC---CCCCCEEEEecCC-CCCcccccccccccccccccccccccccccCCCHHHHHh
Confidence 567899999999999999999986 4789999998864 32221111 0012466778
Q ss_pred cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEE
Q psy4818 517 FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAA 596 (734)
Q Consensus 517 ~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~ 596 (734)
+||+|+++|+||.|+.+..|.. .+....+|+.++++||.++.+.+ .||+++|+|+||++++++++++|+.++|+
T Consensus 116 ~Gy~vv~~D~RG~G~S~G~~~~-----~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~ai 189 (560)
T 3iii_A 116 NDYVVVKVALRGSDKSKGVLSP-----WSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAM 189 (560)
T ss_dssp GTCEEEEEECTTSTTCCSCBCT-----TSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEE
T ss_pred CCCEEEEEcCCCCCCCCCcccc-----CChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEE
Confidence 8999999999998887765542 23356899999999999988887 89999999999999999999999999999
Q ss_pred EEcCCcchhccccccccC-------ccccc----ccC-CCCCHHHH----------HHHHhCCccCCCCCCCCCccCCcE
Q psy4818 597 LILVGALDMLRFNKFTIA-------YYSES----EFG-SPNNKTHF----------HNLLSYSPLHNIKVPPNNTQYPAT 654 (734)
Q Consensus 597 v~~~~~~d~~~~~~~~~~-------~~~~~----~~g-~~~~~~~~----------~~~~~~sp~~~~~~p~~~~~~P~~ 654 (734)
|+.+|+.|+.+......+ ..|.. .|. .+...+.. ++++..++ ++.+ ++.| +
T Consensus 190 v~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~----I~vP-v 262 (560)
T 3iii_A 190 IPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQ----IKTP-L 262 (560)
T ss_dssp EEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGG----CCSC-E
T ss_pred EecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhh----CCCC-E
Confidence 999999997642111111 01110 010 01000011 12333333 3443 7888 9
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 655 LVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 655 Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
|+++|-.|..+....+.+.+++|+.. ...+++.+ .+|... .. ..+.....++||+++|+..
T Consensus 263 l~v~Gw~D~~~~~~g~l~~y~~l~~~---------~k~l~ih~-~~~~~~--~~-~~~~~~~~~~wfD~~LkG~ 323 (560)
T 3iii_A 263 LTCASWSTQGLHNRGSFEGFKQAASE---------EKWLYVHG-RKEWES--YY-ARENLERQKSFFDFYLKEE 323 (560)
T ss_dssp EEEEEGGGTTTTHHHHHHHHHHCCCS---------SEEEEEES-SCHHHH--HH-SHHHHHHHHHHHHHHTSCC
T ss_pred EEeCCcCCCcccchhHHHHHHhcccc---------CcEEEECC-CCCcCc--cc-ChhHHHHHHHHHHHHhCCC
Confidence 99999999766777787777776533 23455432 223210 01 1244566799999999754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-17 Score=172.11 Aligned_cols=303 Identities=8% Similarity=-0.021 Sum_probs=187.5
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEE
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIK 173 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~ 173 (734)
+.++|||.+++|.....+. ..||+.+..+++.+.+++.... .+..+.|||||++|+|.... ..|+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~------~~~~~~~spdg~~l~~~~~~-----~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGD------NTFGGFLSPDDDALFYVKDG-----RNLMRV 107 (388)
T ss_dssp CCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCB------CSSSCEECTTSSEEEEEETT-----TEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCC------CccceEEcCCCCEEEEEeCC-----CeEEEE
Confidence 6678999999999875433 4689888777777776653311 12257899999999998842 379999
Q ss_pred ECCCCCccccccccc-ccC--eeEEEcCCcEEEEEEEecCCCCCCCCc------ccccCCcEEEEEECCCCCCCCeeEEe
Q psy4818 174 DVDTGKDYPEVLKNV-KFP--SISWTHDHKGFFYNQYCDINGTADGTE------TTAHMGQKIYYHVLGTEQDKDIPVVE 244 (734)
Q Consensus 174 dl~~g~~~~~~~~~~-~~~--~~~wSpDg~~l~y~~~~~~~~~~~~~~------~~~~~~~~l~~~~l~t~~~~~~~v~~ 244 (734)
|+++|+......... ... ...++|||+.|+....+.......... ........|+++++.++.. ..+..
T Consensus 108 d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~ 185 (388)
T 3pe7_A 108 DLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQ 185 (388)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEE
T ss_pred ECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--EEeec
Confidence 999998543222111 111 233489999988765432110000000 0012336899999988743 23333
Q ss_pred cCCCCeeEEEEEEec-CCcEEEEEEecCCC--CceEEEEeCCCCCCCcccCCCCceeeecccc--ceE-EEEEecCCeEE
Q psy4818 245 FPNGRSLGLHSEVTD-CGRYLLVSTSNNTQ--GSDLHYFDLHSLPDGKISGKFPLKTVIPGMD--HHH-EIIANNGPELI 318 (734)
Q Consensus 245 ~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~--~~~-~~~s~dg~~l~ 318 (734)
.. .....+.||| ||++|++....... ..+||++|++++. ...+..... ... ..|+|||++|+
T Consensus 186 ~~---~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 186 EN---QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---------MRKVKTHAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp ES---SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---------CEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred CC---ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---------eEEeeeCCCCcccccceECCCCCEEE
Confidence 32 2456899999 99999998764221 3689999998732 233333221 112 24999999999
Q ss_pred EEeCCCCC-CceEEEEecCCCCCCCceEeecCCCCce-e-E----EEEEeeCCEEEEEEEe------CCceeEEEEECCC
Q psy4818 319 VKTTKNAP-KGKVVTINLNNPCEKNWKTLIPEDENRT-L-D----VVAAVANNKLIVHYIQ------NVRSVMDLHDLNT 385 (734)
Q Consensus 319 ~~s~~~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~-~----~~~~~~~~~l~~~~~~------~~~~~l~~~dl~~ 385 (734)
|.++..+. ...|+++|+++++ .+.+.... ... . . ....++++.+++.... .+...|+++|+.+
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 254 YVSYLKGSPDRFIYSADPETLE---NRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEEETTCCCEEEEEECTTTCC---EEEEEEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEecCCCCCcceEEEEecCCCc---eEEEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 88876443 3469999998876 23443322 100 0 0 0234555667766543 5567899999976
Q ss_pred CceeeeeCCCCc-----------eEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 386 GKRLHSFPLDLG-----------QITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 386 g~~~~~l~~~~g-----------~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+. +.++...+ .+..+.++||++.+++.... ...+.+|.+++
T Consensus 330 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~l 382 (388)
T 3pe7_A 330 GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYLATL 382 (388)
T ss_dssp TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEEC
T ss_pred Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecC-CCceeEEEEEC
Confidence 664 55654433 34567788999888877544 34567999998
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=172.98 Aligned_cols=243 Identities=13% Similarity=0.061 Sum_probs=157.2
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHH--HHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSIS--RCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
..+.+++.|. .+.++.++ .|+.. .|+||++||+.+......|... ..+++++.|++|+++|.+|++.|.
T Consensus 5 ~~~~~~~~s~~~~~~~~v~--~~p~~-----~~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~- 76 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQ--FQGGG-----PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYT- 76 (280)
T ss_dssp CEEEEEEEETTTTEEEEEE--EECCS-----SSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTS-
T ss_pred eEEEEEEECcccCceeEEE--EcCCC-----CCEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCcccc-
Confidence 3556666665 45666665 34442 2589999998531222223221 235666679999999988755443
Q ss_pred hhhhccc--cccCCCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-
Q psy4818 535 DWHNAGR--LLKKQNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN- 609 (734)
Q Consensus 535 ~~~~~~~--~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~- 609 (734)
.|..... +......+++++ ..+.++.++.-+++++++|+|+||||++++.++.++|++|+++|+.+|..++....
T Consensus 77 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 156 (280)
T 1dqz_A 77 DWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWW 156 (280)
T ss_dssp BCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTH
T ss_pred CCCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcch
Confidence 1211110 000233455543 34444444334677899999999999999999999999999999999988754310
Q ss_pred ----c----cccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCc--cCCcEEEEecCCCC--------------CC
Q psy4818 610 ----K----FTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNT--QYPATLVLTGDHDD--------------RV 665 (734)
Q Consensus 610 ----~----~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~--~~P~~Li~~g~~D~--------------~v 665 (734)
. ......+...||.+... .+.+.+|+.++.. . +-+|++|.||+.|. .+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~----l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~ 228 (280)
T 1dqz_A 157 PTLIGLAMNDSGGYNANSMWGPSSDP----AWKRNDPMVQIPR----LVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGL 228 (280)
T ss_dssp HHHHHHHHHHTTSCCHHHHHCSTTSH----HHHHTCTTTTHHH----HHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHH
T ss_pred hhhHHHHhhhccCcCHHHhcCCCCch----hhhhcCHHHHHHH----HHhcCCeEEEEeCCCCcccccccccchhhHHHH
Confidence 0 00001122335655432 3456788766543 2 22459999999997 57
Q ss_pred CChHHHHHHHHHHhhhCCCCCCC-CcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 666 PPLHSYKFIATLQEKIGSLPYQK-NPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 666 ~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
++.++++++++|++. | .++++.++++++|.+.. ..+...+.+.||.+.||.
T Consensus 229 ~~~~~~~~~~~L~~~-------g~~~~~~~~~~~g~H~~~~----w~~~l~~~l~~l~~~l~~ 280 (280)
T 1dqz_A 229 TLRTNQTFRDTYAAD-------GGRNGVFNFPPNGTHSWPY----WNEQLVAMKADIQHVLNG 280 (280)
T ss_dssp HHHHHHHHHHHHHHT-------TCCSEEEECCSCCCSSHHH----HHHHHHHTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-------CCCceEEEecCCCccChHH----HHHHHHHHHHHHHHHhCC
Confidence 889999999999998 8 99999999999997631 234556678999888763
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=168.02 Aligned_cols=197 Identities=13% Similarity=0.073 Sum_probs=136.7
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhc-----CeEEEEEecccC------CCCCchhhhcc-ccccC---CCch
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF-----NGIYAIPNIRGG------GELGEDWHNAG-RLLKK---QNCF 549 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~-----G~~v~~~~~rG~------~~~g~~~~~~~-~~~~~---~~~~ 549 (734)
+++.|+||++||..+.... |.. +...|..+ |+.|++++.++. ++.+..|+... ..... ...+
T Consensus 20 ~~~~p~vv~lHG~g~~~~~--~~~-~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 96 (239)
T 3u0v_A 20 GRHSASLIFLHGSGDSGQG--LRM-WIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESI 96 (239)
T ss_dssp SCCCEEEEEECCTTCCHHH--HHH-HHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHH
T ss_pred CCCCcEEEEEecCCCchhh--HHH-HHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhH
Confidence 3578999999997554322 222 33444443 799999998642 33444554421 11111 1234
Q ss_pred hHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCC
Q psy4818 550 DDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNN 626 (734)
Q Consensus 550 ~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~ 626 (734)
+++...+..++++ ..+++++++|+|+|+||++++.++.++|+.++++|+.+|..+....
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------ 158 (239)
T 3u0v_A 97 DVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------------------ 158 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH------------------
Confidence 4445444444433 3478899999999999999999999999999999999987643211
Q ss_pred HHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc
Q psy4818 627 KTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP 706 (734)
Q Consensus 627 ~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 706 (734)
....+. ... ...||+|++||++|..|++.++.+++++|++. +.++++++++++||.+.
T Consensus 159 --~~~~~~-------~~~----~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~~g~~H~~~-- 216 (239)
T 3u0v_A 159 --VYQALQ-------KSN----GVLPELFQCHGTADELVLHSWAEETNSMLKSL-------GVTTKFHSFPNVYHELS-- 216 (239)
T ss_dssp --HHHHHH-------HCC----SCCCCEEEEEETTCSSSCHHHHHHHHHHHHHT-------TCCEEEEEETTCCSSCC--
T ss_pred --HHHHHH-------hhc----cCCCCEEEEeeCCCCccCHHHHHHHHHHHHHc-------CCcEEEEEeCCCCCcCC--
Confidence 111111 011 45567999999999999999999999999998 88999999999999986
Q ss_pred hHHhHHHHHHHHHHHHHHcCCC
Q psy4818 707 LMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 707 ~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
.+....+.+||.++|...
T Consensus 217 ----~~~~~~~~~~l~~~l~~~ 234 (239)
T 3u0v_A 217 ----KTELDILKLWILTKLPGE 234 (239)
T ss_dssp ----HHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHHHhCCCc
Confidence 244667899999998643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=186.04 Aligned_cols=296 Identities=8% Similarity=0.017 Sum_probs=191.9
Q ss_pred cCCcEEeCCeEEEEEE-cCCCCeeEEEEEeCCCCCeEEEeCCCCcCCC------------------CcEEEeeEEeCCCC
Q psy4818 93 YSAPQRQENNYFYFHN-KGLQNHSILYVQRNLTGSTEVFLDPNKLSKD------------------GTTALKLYAFSDNG 153 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~------------------~~~~~~~~~~SPDG 153 (734)
...+++||.+++|... +++.....||+.+..++..+.+++......+ +...+..++|||||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 3455689999999987 5544456789888877887888875433200 00336789999999
Q ss_pred cEEEEEEeCCCCceEEEEEEECCCC---CcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEE
Q psy4818 154 KHFAYCLSKSGSDWNTLHIKDVDTG---KDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYH 230 (734)
Q Consensus 154 ~~la~~~~~~g~~~~~l~v~dl~~g---~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (734)
++|+|+.. .+|++||+.++ +....+........++|||||+.|+|++. ..|+++
T Consensus 121 ~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----------------~~i~~~ 177 (741)
T 2ecf_A 121 QRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----------------RNLWVI 177 (741)
T ss_dssp SEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----------------TEEEEE
T ss_pred CEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----------------CcEEEE
Confidence 99999885 47999999998 65444333333468999999999999873 169999
Q ss_pred ECCCCCCCCeeEEecCCCCe--------------eEEEEEEecCCcEEEEEEecCCC-----------------------
Q psy4818 231 VLGTEQDKDIPVVEFPNGRS--------------LGLHSEVTDCGRYLLVSTSNNTQ----------------------- 273 (734)
Q Consensus 231 ~l~t~~~~~~~v~~~~~~~~--------------~~~~~~~SpDG~~l~~~~~~~~~----------------------- 273 (734)
++.++... .+........ ....+.|||||++|++.......
T Consensus 178 d~~~g~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 178 DLASGRQM--QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp ETTTTEEE--ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ecCCCCEE--EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 98875321 1111111100 02468999999999998654311
Q ss_pred ------CceEEEEeCCC-CCCCcccCCCCceeeec---cccceEE-EEEecCCeEEEEeC-CCCCCceEEEEecCCCCCC
Q psy4818 274 ------GSDLHYFDLHS-LPDGKISGKFPLKTVIP---GMDHHHE-IIANNGPELIVKTT-KNAPKGKVVTINLNNPCEK 341 (734)
Q Consensus 274 ------~~~i~~~d~~~-~~~~~l~~~~~~~~l~~---~~~~~~~-~~s~dg~~l~~~s~-~~~~~~~l~~~d~~~~~~~ 341 (734)
...|+++|+.+ +... .+.. ....... .| |||+.|++.+. +.....+|+++|++++.
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~---------~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-- 323 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQ---------WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-- 323 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCE---------EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC--
T ss_pred CCCCCCeeEEEEEECCCCCceE---------EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc--
Confidence 13899999877 5321 1211 1111122 39 99999998764 44456789999998876
Q ss_pred CceEeecCCCCc---eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEee-ccCcccceEEEEEec
Q psy4818 342 NWKTLIPEDENR---TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHI-SGRRKYNEVFYGFTS 417 (734)
Q Consensus 342 ~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~-~~~~d~~~l~~~~ss 417 (734)
...++...... .+..+.+..++++++....++..+|+.+++ +|+ .+.++.....+..+ .++++++.+++..+.
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~-~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 324 -QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS-KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp -EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS-SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred -eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC-CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence 45554432111 122334444456777777777788999998 455 67777655555555 478999888776543
Q ss_pred CCCCc--eEEEEeC
Q psy4818 418 FLQPG--TIYHCNI 429 (734)
Q Consensus 418 ~~~P~--~~~~~d~ 429 (734)
..+. .+|.+++
T Consensus 401 -~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 401 -ESARESQIYAVPL 413 (741)
T ss_dssp -SCTTCBEEEEEET
T ss_pred -CCCceEEEEEEEc
Confidence 3333 4666665
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=159.50 Aligned_cols=199 Identities=17% Similarity=0.097 Sum_probs=140.0
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH-HHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI-SRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
+...++ .||.+|.++++.|.+ +.|+||++||+.+... .|.. .+...|+++||.|+.+|+||.|.. +..
T Consensus 5 ~~~~~~-~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s---~~~ 73 (207)
T 3bdi_A 5 QEEFID-VNGTRVFQRKMVTDS-----NRRSIALFHGYSFTSM--DWDKADLFNNYSKIGYNVYAPDYPGFGRS---ASS 73 (207)
T ss_dssp EEEEEE-ETTEEEEEEEECCTT-----CCEEEEEECCTTCCGG--GGGGGTHHHHHHTTTEEEEEECCTTSTTS---CCC
T ss_pred eeEEEe-eCCcEEEEEEEeccC-----CCCeEEEECCCCCCcc--ccchHHHHHHHHhCCCeEEEEcCCccccc---Ccc
Confidence 444443 488999999998864 5789999999876544 3333 145667778999999999995433 211
Q ss_pred ccccccCCC-chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCccc
Q psy4818 539 AGRLLKKQN-CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYS 617 (734)
Q Consensus 539 ~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 617 (734)
. ...... .++++.+.+..++++ .+.++++++|+|+||.+++.++.++|+.++++|+.+|.... .
T Consensus 74 ~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~-~---------- 138 (207)
T 3bdi_A 74 E--KYGIDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVE-S---------- 138 (207)
T ss_dssp T--TTCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCG-G----------
T ss_pred c--CCCCCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCcccc-c----------
Confidence 1 111223 678888888877765 35579999999999999999999999999999999886211 0
Q ss_pred ccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC
Q psy4818 618 ESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697 (734)
Q Consensus 618 ~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 697 (734)
+ ...+ .+ ++.| +|+++|++|..+++..+.++.+.+. ++++.+++
T Consensus 139 ---~--------~~~~------~~-------~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~ 182 (207)
T 3bdi_A 139 ---L--------KGDM------KK-------IRQK-TLLVWGSKDHVVPIALSKEYASIIS-----------GSRLEIVE 182 (207)
T ss_dssp ---G--------HHHH------TT-------CCSC-EEEEEETTCTTTTHHHHHHHHHHST-----------TCEEEEET
T ss_pred ---h--------hHHH------hh-------ccCC-EEEEEECCCCccchHHHHHHHHhcC-----------CceEEEeC
Confidence 0 0111 12 4445 9999999999999988877776653 34788999
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 698 DAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 698 ~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
++||.+..... .+....+.+||.
T Consensus 183 ~~~H~~~~~~~--~~~~~~i~~fl~ 205 (207)
T 3bdi_A 183 GSGHPVYIEKP--EEFVRITVDFLR 205 (207)
T ss_dssp TCCSCHHHHSH--HHHHHHHHHHHH
T ss_pred CCCCCccccCH--HHHHHHHHHHHh
Confidence 99998643222 345555677775
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=162.08 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=133.7
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHh--cCeEEEEEeccc------CCCCCchhhhc-ccc---ccCCCch---
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH--FNGIYAIPNIRG------GGELGEDWHNA-GRL---LKKQNCF--- 549 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG------~~~~g~~~~~~-~~~---~~~~~~~--- 549 (734)
.++.|+||++||..+.... |. .+...|++ +||.|+++|.+| +|..+..|++. +.+ ......+
T Consensus 11 ~~~~~~vv~~HG~~~~~~~--~~-~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~ 87 (218)
T 1auo_A 11 KPADACVIWLHGLGADRYD--FM-PVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVS 87 (218)
T ss_dssp SCCSEEEEEECCTTCCTTT--TH-HHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHH
T ss_pred CCCCcEEEEEecCCCChhh--HH-HHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHHHHH
Confidence 3678999999998655433 33 34567776 799999998774 22222233321 111 0111223
Q ss_pred -hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh-cCCCceeEEEEcCCcchhccccccccCcccccccCCCCCH
Q psy4818 550 -DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN-QRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNK 627 (734)
Q Consensus 550 -~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~-~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~ 627 (734)
+|+.+.++++.+ ..+++++++++|+|+||++++.++. ++|+.++++|+.+|..+.. .+..++ .
T Consensus 88 ~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~---------~~~~~~----~- 152 (218)
T 1auo_A 88 AKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF---------GDELEL----S- 152 (218)
T ss_dssp HHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC---------CTTCCC----C-
T ss_pred HHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc---------hhhhhh----h-
Confidence 344445555544 2468889999999999999999999 9999999999999987640 010000 0
Q ss_pred HHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCch
Q psy4818 628 THFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL 707 (734)
Q Consensus 628 ~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (734)
... ++.| +|+++|++|..|+++++.++++.+++. |.++++++++ +||.+..
T Consensus 153 --------------~~~----~~~P-~l~i~G~~D~~~~~~~~~~~~~~l~~~-------g~~~~~~~~~-~gH~~~~-- 203 (218)
T 1auo_A 153 --------------ASQ----QRIP-ALCLHGQYDDVVQNAMGRSAFEHLKSR-------GVTVTWQEYP-MGHEVLP-- 203 (218)
T ss_dssp --------------HHH----HTCC-EEEEEETTCSSSCHHHHHHHHHHHHTT-------TCCEEEEEES-CSSSCCH--
T ss_pred --------------hcc----cCCC-EEEEEeCCCceecHHHHHHHHHHHHhC-------CCceEEEEec-CCCccCH--
Confidence 011 4455 999999999999999999999999987 7889999999 9998742
Q ss_pred HHhHHHHHHHHHHHHHHcC
Q psy4818 708 MKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 708 ~~~~~~~~~~~~fl~~~l~ 726 (734)
+....+.+||.++|+
T Consensus 204 ----~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 204 ----QEIHDIGAWLAARLG 218 (218)
T ss_dssp ----HHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHhC
Confidence 345578899998763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-16 Score=166.35 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=164.6
Q ss_pred CCCcEEEEEEeCCCCc-eEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEE
Q psy4818 151 DNGKHFAYCLSKSGSD-WNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY 229 (734)
Q Consensus 151 PDG~~la~~~~~~g~~-~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (734)
+.+++|+|+....+.+ ..+|++||++++..............++|||||+.|+|...+. ....|++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-------------~~~~i~~ 207 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------------GRSALVI 207 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-------------SSCEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-------------CCcEEEE
Confidence 4588999998764322 2789999998765443333333346899999999999998532 2348999
Q ss_pred EECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-
Q psy4818 230 HVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE- 308 (734)
Q Consensus 230 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~- 308 (734)
+++.++.. ..+... ......++|||||++|++..... ....||++|+.++. ...+.........
T Consensus 208 ~d~~tg~~--~~l~~~---~~~~~~~~~spdg~~la~~~~~~-g~~~i~~~d~~~~~---------~~~l~~~~~~~~~~ 272 (415)
T 2hqs_A 208 QTLANGAV--RQVASF---PRHNGAPAFSPDGSKLAFALSKT-GSLNLYVMDLASGQ---------IRQVTDGRSNNTEP 272 (415)
T ss_dssp EETTTCCE--EEEECC---SSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCC---------EEECCCCSSCEEEE
T ss_pred EECCCCcE--EEeecC---CCcccCEEEcCCCCEEEEEEecC-CCceEEEEECCCCC---------EEeCcCCCCcccce
Confidence 99987643 223222 23567899999999999877543 33689999998732 2333333223333
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeCCceeEEEEECCCCc
Q psy4818 309 IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 309 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
.|+|||+.|++.+++++ ..+|+.+|++++. ...+.... . .+..+.+ ++++.|++....++...|++||+.+|+
T Consensus 273 ~~spdg~~l~~~s~~~g-~~~i~~~d~~~~~---~~~l~~~~-~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAG-RPQVYKVNINGGA---PQRITWEG-S-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EECTTSSEEEEEECTTS-SCEEEEEETTSSC---CEECCCSS-S-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred EECCCCCEEEEEECCCC-CcEEEEEECCCCC---EEEEecCC-C-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 39999999999987543 4579999998765 34444433 2 3333444 455567777766666799999998777
Q ss_pred eeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 388 RLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 388 ~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. +.+.... .+..+.++|+++.+++.... .....+|.+|+
T Consensus 347 ~-~~l~~~~-~~~~~~~spdg~~l~~~s~~-~~~~~l~~~d~ 385 (415)
T 2hqs_A 347 V-QVLSSTF-LDETPSLAPNGTMVIYSSSQ-GMGSVLNLVST 385 (415)
T ss_dssp E-EECCCSS-SCEEEEECTTSSEEEEEEEE-TTEEEEEEEET
T ss_pred E-EEecCCC-CcCCeEEcCCCCEEEEEEcC-CCccEEEEEEC
Confidence 6 5555433 56678889999877765543 33457999999
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=161.22 Aligned_cols=191 Identities=20% Similarity=0.180 Sum_probs=133.4
Q ss_pred cCCCCCcEEEEecCCCCCcCCccccHHHHHHHHh--cCeEEEEEecccC------CCCCchhhhc-ccc---ccCCCchh
Q psy4818 483 LRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH--FNGIYAIPNIRGG------GELGEDWHNA-GRL---LKKQNCFD 550 (734)
Q Consensus 483 ~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~------~~~g~~~~~~-~~~---~~~~~~~~ 550 (734)
..+++.|+||++||+.+... .|. .+...|++ +||.|+++|+||. |..+..|.+. +.+ ......++
T Consensus 19 ~~~~~~~~vv~lHG~~~~~~--~~~-~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~ 95 (226)
T 3cn9_A 19 DAPNADACIIWLHGLGADRT--DFK-PVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLN 95 (226)
T ss_dssp CCTTCCEEEEEECCTTCCGG--GGH-HHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHHH
T ss_pred cCCCCCCEEEEEecCCCChH--HHH-HHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhHH
Confidence 34567899999999865443 233 34566665 7999999998852 1112223221 111 01112233
Q ss_pred HH----HHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh-cCCCceeEEEEcCCcchhccccccccCcccccccCCCC
Q psy4818 551 DF----QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN-QRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPN 625 (734)
Q Consensus 551 D~----~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~-~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~ 625 (734)
+. .+.++++.+ ..+++++++++|+|+||++++.++. ++|+.++++|+.+|..+.....
T Consensus 96 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~---------------- 158 (226)
T 3cn9_A 96 ASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL---------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC----------------
T ss_pred HHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh----------------
Confidence 33 344444433 2468889999999999999999999 9999999999999977543211
Q ss_pred CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4818 626 NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 626 ~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 705 (734)
.+.+ . .++.| +|+++|++|..||+.++.++++.|+.. |.++++++++ +||.+.
T Consensus 159 ---------~~~~----~----~~~~P-~lii~G~~D~~~~~~~~~~~~~~l~~~-------g~~~~~~~~~-~gH~~~- 211 (226)
T 3cn9_A 159 ---------ALDE----R----HKRIP-VLHLHGSQDDVVDPALGRAAHDALQAQ-------GVEVGWHDYP-MGHEVS- 211 (226)
T ss_dssp ---------CCCT----G----GGGCC-EEEEEETTCSSSCHHHHHHHHHHHHHT-------TCCEEEEEES-CCSSCC-
T ss_pred ---------hhcc----c----ccCCC-EEEEecCCCCccCHHHHHHHHHHHHHc-------CCceeEEEec-CCCCcc-
Confidence 0000 1 15556 999999999999999999999999988 7889999999 999874
Q ss_pred chHHhHHHHHHHHHHHHHHc
Q psy4818 706 PLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 706 ~~~~~~~~~~~~~~fl~~~l 725 (734)
.+....+.+||.++|
T Consensus 212 -----~~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 212 -----LEEIHDIGAWLRKRL 226 (226)
T ss_dssp -----HHHHHHHHHHHHHHC
T ss_pred -----hhhHHHHHHHHHhhC
Confidence 234556899998875
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=168.78 Aligned_cols=210 Identities=12% Similarity=0.056 Sum_probs=136.3
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcc---c-cHHHHHHHHhc----CeEEEEEecccC
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPT---F-SISRCMFLRHF----NGIYAIPNIRGG 529 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~---~-~~~~~~~l~~~----G~~v~~~~~rG~ 529 (734)
..+.+++.+.++ .+.++++.|+++.+++++|+|+++||+.+....+. . ....+..|.++ |++|+++|++|+
T Consensus 40 ~~~~~~~~s~~~-~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~~ 118 (297)
T 1gkl_A 40 RIVKETYTGING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGG 118 (297)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCST
T ss_pred eEEEEEEEcCCC-EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcCC
Confidence 677888988886 89999999998866678999999999876543221 1 12234444444 599999999986
Q ss_pred CCCCchhhhccccccCCCchhHHHHHHHHHHHcCC------------CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEE
Q psy4818 530 GELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY------------TKPKYITIMGGSNGGLLVGACLNQRPELYGAAL 597 (734)
Q Consensus 530 ~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~------------~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v 597 (734)
.+.+..|... ..+|+ +.++.+... .|+.+++|+|+|+||++++.++.++|++|++++
T Consensus 119 ~~~~~~~~~~--------~~~~l---~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v 187 (297)
T 1gkl_A 119 NCTAQNFYQE--------FRQNV---IPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFM 187 (297)
T ss_dssp TCCTTTHHHH--------HHHTH---HHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccchHHHHHH--------HHHHH---HHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheee
Confidence 5433332210 12333 344433321 377899999999999999999999999999999
Q ss_pred EcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHH
Q psy4818 598 ILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677 (734)
Q Consensus 598 ~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L 677 (734)
+.+|...+... +. .....+..+...+ .++. ...+ +++.+|+.|.. +.++.+++++|
T Consensus 188 ~~sg~~~~~~~-------------~~-~~~~~~~~~~~~~---~~~~----~~~~-l~~~~G~~D~~--~~~~~~l~~~L 243 (297)
T 1gkl_A 188 PLSGDYWYGNS-------------PQ-DKANSIAEAINRS---GLSK----REYF-VFAATGSEDIA--YANMNPQIEAM 243 (297)
T ss_dssp EESCCCCBSSS-------------HH-HHHHHHHHHHHHH---TCCT----TSCE-EEEEEETTCTT--HHHHHHHHHHH
T ss_pred EeccccccCCc-------------cc-hhhhHHHHHHhhc---cCCc----CcEE-EEEEeCCCccc--chhHHHHHHHH
Confidence 99997643210 00 0001111111111 1221 1222 67778999975 46888999999
Q ss_pred Hhhh-C--CCCCCCCcEEEEEeCCCCCCC
Q psy4818 678 QEKI-G--SLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 678 ~~~~-~--~~~~~~~~~~~~~~~~~gH~~ 703 (734)
+++. . .....+.++++.+++++||.+
T Consensus 244 ~~~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 244 KALPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp HTSTTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHcCCccccccccCCceEEEECCCCCcCH
Confidence 9871 0 000011689999999999975
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=167.12 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=132.6
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEE--ecccCCCCCchhhhcc-cccc----CCCchhHHHHHHHH
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIP--NIRGGGELGEDWHNAG-RLLK----KQNCFDDFQAAAEY 558 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~--~~rG~~~~g~~~~~~~-~~~~----~~~~~~D~~~~~~~ 558 (734)
++.|+||++||+.+... .|. .+...|++ +|.|+++ |+||.|++ .|.... .... .....+|+.+++++
T Consensus 60 ~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~-~~~v~~~~~d~~g~g~s--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN--QFF-DFGARLLP-QATILSPVGDVSEHGAA--RFFRRTGEGVYDMVDLERATGKMADFIKA 133 (251)
T ss_dssp TTSCEEEEECCTTCCHH--HHH-HHHHHHST-TSEEEEECCSEEETTEE--ESSCBCGGGCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh--HHH-HHHHhcCC-CceEEEecCCcCCCCCc--ccccCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 56899999999865433 233 24466665 7999999 78886633 232211 0100 11235677777777
Q ss_pred HHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCc
Q psy4818 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSP 638 (734)
Q Consensus 559 l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 638 (734)
+.++. +.++++|+|+|+||++++.++.++|++++++|+.+|+.+... .+
T Consensus 134 ~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-----------------------------~~ 182 (251)
T 2r8b_A 134 NREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-----------------------------KI 182 (251)
T ss_dssp HHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC-----------------------------CC
T ss_pred HHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc-----------------------------cc
Confidence 76653 778999999999999999999999999999999999764321 00
Q ss_pred cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHH
Q psy4818 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIY 718 (734)
Q Consensus 639 ~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 718 (734)
.... ++.| +|+++|++|..|++.++.+++++|++. +.++++ +++++||.+. .+....+.
T Consensus 183 --~~~~----~~~P-~li~~g~~D~~~~~~~~~~~~~~l~~~-------~~~~~~-~~~~~gH~~~------~~~~~~~~ 241 (251)
T 2r8b_A 183 --SPAK----PTRR-VLITAGERDPICPVQLTKALEESLKAQ-------GGTVET-VWHPGGHEIR------SGEIDAVR 241 (251)
T ss_dssp --CCCC----TTCE-EEEEEETTCTTSCHHHHHHHHHHHHHH-------SSEEEE-EEESSCSSCC------HHHHHHHH
T ss_pred --cccc----cCCc-EEEeccCCCccCCHHHHHHHHHHHHHc-------CCeEEE-EecCCCCccC------HHHHHHHH
Confidence 1111 3455 999999999999999999999999988 777776 5567899983 24456789
Q ss_pred HHHHHHcCC
Q psy4818 719 VFLMKSLGL 727 (734)
Q Consensus 719 ~fl~~~l~~ 727 (734)
+||.++|+.
T Consensus 242 ~~l~~~l~~ 250 (251)
T 2r8b_A 242 GFLAAYGGG 250 (251)
T ss_dssp HHHGGGC--
T ss_pred HHHHHhcCC
Confidence 999998864
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=184.66 Aligned_cols=303 Identities=10% Similarity=0.045 Sum_probs=181.7
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC----CceE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG----SDWN 168 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g----~~~~ 168 (734)
...++++|.+++. . . . .|++.+..++..++++.......- .....+++|||||++|||...... +...
T Consensus 21 ~~~w~~dg~~~~~-~--~--~--~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 21 SLRWISDHEYLYK-Q--E--N--NILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CEEECSSSEEEEE-E--T--T--EEEEEETTTCCEEEEECTTTTTTC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCcEEEE-c--C--C--cEEEEECCCCceEEEEechhhhhh-cccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 3455577754443 2 2 1 366666667777778775543211 111235899999999999986421 2236
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG 248 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~ 248 (734)
.+|++|+++|+..+.+........++|||||+.|+|+.. ..||++++.++.... +.+....+
T Consensus 93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~-----------------~~i~~~~~~~~~~~~-lt~~g~~~ 154 (740)
T 4a5s_A 93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN-----------------NDIYVKIEPNLPSYR-ITWTGKED 154 (740)
T ss_dssp EEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET-----------------TEEEEESSTTSCCEE-CCSCCBTT
T ss_pred EEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEEC-----------------CeEEEEECCCCceEE-EcCCCCcc
Confidence 899999999987654443333468999999999999963 269999987765321 11111111
Q ss_pred Ce---------------eEEEEEEecCCcEEEEEEecCCC--------------------------------CceEEEEe
Q psy4818 249 RS---------------LGLHSEVTDCGRYLLVSTSNNTQ--------------------------------GSDLHYFD 281 (734)
Q Consensus 249 ~~---------------~~~~~~~SpDG~~l~~~~~~~~~--------------------------------~~~i~~~d 281 (734)
.. ....+.|||||++|+|...+... ...|+++|
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d 234 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN 234 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence 00 01247899999999998643221 02688899
Q ss_pred CCC---CCCCcccCCCCceeeec------cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC----CCCceEee
Q psy4818 282 LHS---LPDGKISGKFPLKTVIP------GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC----EKNWKTLI 347 (734)
Q Consensus 282 ~~~---~~~~~l~~~~~~~~l~~------~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~~l~ 347 (734)
+++ +... ....+.. .......+ |||||+.+++..++......|+++|+++++ ......++
T Consensus 235 ~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~ 308 (740)
T 4a5s_A 235 TDSLSSVTNA------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI 308 (740)
T ss_dssp TTSCCSSSCC------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred CCCCCCCCcc------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence 887 4210 1122221 11112223 999999888888887767789999998764 11122332
Q ss_pred cCCCCcee------EEEEEeeCCEEE-EEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEec-CC
Q psy4818 348 PEDENRTL------DVVAAVANNKLI-VHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTS-FL 419 (734)
Q Consensus 348 ~~~~~~~~------~~~~~~~~~~l~-~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss-~~ 419 (734)
.+.....+ ...+.++++.++ +...++|..+|+++|+.+++ .+.|+.....+..+. .+|++.++|..+. ..
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~ 386 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIE-ALTSDYLYYISNEYKG 386 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-CEESCCSSSCEEEEE-EECSSEEEEEESCGGG
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-eEecccCCEEEEEEE-EEeCCEEEEEEecCCC
Confidence 22211111 123335555666 55567788999999996554 467775544443332 2457777776543 02
Q ss_pred CC--ceEEEEeC
Q psy4818 420 QP--GTIYHCNI 429 (734)
Q Consensus 420 ~P--~~~~~~d~ 429 (734)
.| ..||.+++
T Consensus 387 ~~~~~~ly~v~~ 398 (740)
T 4a5s_A 387 MPGGRNLYKIQL 398 (740)
T ss_dssp CTTCBEEEEEET
T ss_pred CCceeEEEEEEC
Confidence 34 46888888
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=163.88 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=138.5
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc-----
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL----- 543 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~----- 543 (734)
+..+...++.|.. ...|+||++||+.+... .|.. +...|++ ||.|+++|.++....|..|+......
T Consensus 15 ~~~l~~~~~~~~~----~~~p~vv~lHG~g~~~~--~~~~-~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~ 86 (223)
T 3b5e_A 15 DLAFPYRLLGAGK----ESRECLFLLHGSGVDET--TLVP-LARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQK 86 (223)
T ss_dssp SSSSCEEEESTTS----SCCCEEEEECCTTBCTT--TTHH-HHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHH
T ss_pred CCCceEEEeCCCC----CCCCEEEEEecCCCCHH--HHHH-HHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccHH
Confidence 4445554443332 33499999999765443 3333 4466665 99999999887432255555421100
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCC
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGS 623 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~ 623 (734)
......+|+.+.++++.++..+++++++|+|+|+||.+++.++.++|+.++++|+.+|......
T Consensus 87 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------------- 150 (223)
T 3b5e_A 87 SILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH---------------- 150 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc----------------
Confidence 0112345666677777665457889999999999999999999999999999999998653210
Q ss_pred CCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC
Q psy4818 624 PNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 624 ~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~ 703 (734)
+ + .... .+.| +|+++|++|..||+.++. +++.|++. |.++++++++ +||.+
T Consensus 151 ~-------------~--~~~~----~~~P-~li~~G~~D~~v~~~~~~-~~~~l~~~-------g~~~~~~~~~-~gH~~ 201 (223)
T 3b5e_A 151 V-------------P--ATDL----AGIR-TLIIAGAADETYGPFVPA-LVTLLSRH-------GAEVDARIIP-SGHDI 201 (223)
T ss_dssp C-------------C--CCCC----TTCE-EEEEEETTCTTTGGGHHH-HHHHHHHT-------TCEEEEEEES-CCSCC
T ss_pred c-------------c--cccc----cCCC-EEEEeCCCCCcCCHHHHH-HHHHHHHC-------CCceEEEEec-CCCCc
Confidence 0 0 1111 3445 999999999999999999 99999988 8899999999 99998
Q ss_pred CCchHHhHHHHHHHHHHHHHHcC
Q psy4818 704 GTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 704 ~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
.. +....+.+||.+.+.
T Consensus 202 ~~------~~~~~i~~~l~~~~~ 218 (223)
T 3b5e_A 202 GD------PDAAIVRQWLAGPIA 218 (223)
T ss_dssp CH------HHHHHHHHHHHCC--
T ss_pred CH------HHHHHHHHHHHhhhh
Confidence 52 334567899987654
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-18 Score=169.67 Aligned_cols=214 Identities=14% Similarity=0.121 Sum_probs=139.0
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
++.|+||++||..+.... |. .+...|+++||.|+++|+||.|......... .-....+|+.++++++.++
T Consensus 38 g~~~~vv~~HG~~~~~~~--~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~----~~~~~~~d~~~~i~~l~~~--- 107 (270)
T 3rm3_A 38 NGPVGVLLVHGFTGTPHS--MR-PLAEAYAKAGYTVCLPRLKGHGTHYEDMERT----TFHDWVASVEEGYGWLKQR--- 107 (270)
T ss_dssp CSSEEEEEECCTTCCGGG--TH-HHHHHHHHTTCEEEECCCTTCSSCHHHHHTC----CHHHHHHHHHHHHHHHHTT---
T ss_pred CCCeEEEEECCCCCChhH--HH-HHHHHHHHCCCEEEEeCCCCCCCCccccccC----CHHHHHHHHHHHHHHHHhh---
Confidence 345999999997655432 43 3456677779999999999966543221111 1112356778888888755
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc----cCcccccccCCCC-------------CHH
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT----IAYYSESEFGSPN-------------NKT 628 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~----~~~~~~~~~g~~~-------------~~~ 628 (734)
.++++++|+|+||++++.++.++|+ ++++|+.+|..++....... ....|...++... ...
T Consensus 108 -~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (270)
T 3rm3_A 108 -CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTA 185 (270)
T ss_dssp -CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHH
T ss_pred -CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChh
Confidence 6789999999999999999999999 99999999876543221100 0011111111100 001
Q ss_pred HHHHHHhC--CccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc
Q psy4818 629 HFHNLLSY--SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP 706 (734)
Q Consensus 629 ~~~~~~~~--sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 706 (734)
.+..+... .....+.. ++.| +|+++|++|..|++.++.++++++. +.++++++++++||.+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~----~~~P-~lii~G~~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gH~~~~~ 251 (270)
T 3rm3_A 186 SLLQLARLMAQTKAKLDR----IVCP-ALIFVSDEDHVVPPGNADIIFQGIS---------STEKEIVRLRNSYHVATLD 251 (270)
T ss_dssp HHHHHHHHHHHHHHTGGG----CCSC-EEEEEETTCSSSCTTHHHHHHHHSC---------CSSEEEEEESSCCSCGGGS
T ss_pred HHHHHHHHHHHHHhhhhh----cCCC-EEEEECCCCcccCHHHHHHHHHhcC---------CCcceEEEeCCCCcccccC
Confidence 11111000 01122332 5666 9999999999999999988887764 3367899999999998654
Q ss_pred hHHhHHHHHHHHHHHHHHcC
Q psy4818 707 LMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 707 ~~~~~~~~~~~~~fl~~~l~ 726 (734)
.. ..+....+.+||.++.+
T Consensus 252 ~~-~~~~~~~i~~fl~~~~~ 270 (270)
T 3rm3_A 252 YD-QPMIIERSLEFFAKHAG 270 (270)
T ss_dssp TT-HHHHHHHHHHHHHHHC-
T ss_pred cc-HHHHHHHHHHHHHhcCC
Confidence 33 24667788999998753
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=164.09 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=140.7
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCC-CchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGEL-GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~-g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
.+..|+||++||..+... .|. .+...|+++||.|+++|+||.|.. +....... ......+|+.++++++..+
T Consensus 19 ~~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~---~~~~~~~d~~~~i~~l~~~- 91 (251)
T 3dkr_A 19 EGTDTGVVLLHAYTGSPN--DMN-FMARALQRSGYGVYVPLFSGHGTVEPLDILTKG---NPDIWWAESSAAVAHMTAK- 91 (251)
T ss_dssp CCSSEEEEEECCTTCCGG--GGH-HHHHHHHHTTCEEEECCCTTCSSSCTHHHHHHC---CHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCceEEEeCCCCCCHH--HHH-HHHHHHHHCCCEEEecCCCCCCCCChhhhcCcc---cHHHHHHHHHHHHHHHHHh-
Confidence 346788999999766554 343 355667778999999999997655 22221110 1111256788888888765
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccccc---CcccccccCCCCCHHHH--------HH
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI---AYYSESEFGSPNNKTHF--------HN 632 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~---~~~~~~~~g~~~~~~~~--------~~ 632 (734)
.++++++|||+||++++.++.++|++++++|+.+|+........... ...+....+.......+ ..
T Consensus 92 ---~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (251)
T 3dkr_A 92 ---YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAA 168 (251)
T ss_dssp ---CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred ---cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHHhhhHHHHHH
Confidence 67999999999999999999999999999999999876432110000 00000001111111111 11
Q ss_pred HHhC--CccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHh
Q psy4818 633 LLSY--SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKS 710 (734)
Q Consensus 633 ~~~~--sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 710 (734)
+... .+...+.. ++.| +|+++|++|..|++.++.++++++... .++++++++++||.+..... .
T Consensus 169 ~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~gH~~~~~~~-~ 234 (251)
T 3dkr_A 169 IDQFATTVAADLNL----VKQP-TFIGQAGQDELVDGRLAYQLRDALINA--------ARVDFHWYDDAKHVITVNSA-H 234 (251)
T ss_dssp HHHHHHHHHHTGGG----CCSC-EEEEEETTCSSBCTTHHHHHHHHCTTC--------SCEEEEEETTCCSCTTTSTT-H
T ss_pred HHHHHHHHhccccc----cCCC-EEEEecCCCcccChHHHHHHHHHhcCC--------CCceEEEeCCCCcccccccc-h
Confidence 1110 01223333 5666 999999999999999999888877540 36789999999999865532 2
Q ss_pred HHHHHHHHHHHHHH
Q psy4818 711 IEEMTDIYVFLMKS 724 (734)
Q Consensus 711 ~~~~~~~~~fl~~~ 724 (734)
.+....+.+||.+.
T Consensus 235 ~~~~~~i~~fl~~~ 248 (251)
T 3dkr_A 235 HALEEDVIAFMQQE 248 (251)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh
Confidence 46777889999864
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-17 Score=166.41 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=152.1
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
.+..+.+.+++ +|..+.+..+.+.. .++..|+||++||..+... .|.. +...|+++||.|+++|+||.|....
T Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~- 89 (315)
T 4f0j_A 17 AYPVHYLDFTS-QGQPLSMAYLDVAP--KKANGRTILLMHGKNFCAG--TWER-TIDVLADAGYRVIAVDQVGFCKSSK- 89 (315)
T ss_dssp SSCCEEEEEEE-TTEEEEEEEEEECC--SSCCSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCC-
T ss_pred CccceeEEEec-CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCcch--HHHH-HHHHHHHCCCeEEEeecCCCCCCCC-
Confidence 34567777765 66677766665543 2466799999999866544 2443 4566777799999999999654321
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc---ccc
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN---KFT 612 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~---~~~ 612 (734)
.......++++.+.+..+++. .+.++++++|+|+||++++.++.++|+.++++|+..|........ ...
T Consensus 90 ------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 161 (315)
T 4f0j_A 90 ------PAHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWR 161 (315)
T ss_dssp ------CSSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCC
T ss_pred ------CCccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhh
Confidence 111245678888888887776 455689999999999999999999999999999998853211000 000
Q ss_pred cCcccc----------------ccc-CCCCC---HH-----------------------HHHHHHhCCccCCCCCCCCCc
Q psy4818 613 IAYYSE----------------SEF-GSPNN---KT-----------------------HFHNLLSYSPLHNIKVPPNNT 649 (734)
Q Consensus 613 ~~~~~~----------------~~~-g~~~~---~~-----------------------~~~~~~~~sp~~~~~~p~~~~ 649 (734)
....|. ..+ ..... .. ....+...+....+.. +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~ 237 (315)
T 4f0j_A 162 SVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDR----L 237 (315)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGG----C
T ss_pred hhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhccc----C
Confidence 000000 000 00000 00 0111122223333443 6
Q ss_pred cCCcEEEEecCCCCCCCChHH------------HHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHH
Q psy4818 650 QYPATLVLTGDHDDRVPPLHS------------YKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDI 717 (734)
Q Consensus 650 ~~P~~Li~~g~~D~~v~~~~~------------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 717 (734)
++| +|+++|++|..||..+. .+..+.+.+. ...+++++++++||....... .+....+
T Consensus 238 ~~P-~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~gH~~~~~~p--~~~~~~i 307 (315)
T 4f0j_A 238 QMP-TLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARR-------IPQATLVEFPDLGHTPQIQAP--ERFHQAL 307 (315)
T ss_dssp CSC-EEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHH-------STTEEEEEETTCCSCHHHHSH--HHHHHHH
T ss_pred CCC-eEEEEecCCCcCccccccccccccccccchhhhhHHHhh-------cCCceEEEeCCCCcchhhhCH--HHHHHHH
Confidence 777 99999999999996655 5667777776 556789999999998643222 3455566
Q ss_pred HHHHHH
Q psy4818 718 YVFLMK 723 (734)
Q Consensus 718 ~~fl~~ 723 (734)
.+||.+
T Consensus 308 ~~fl~~ 313 (315)
T 4f0j_A 308 LEGLQT 313 (315)
T ss_dssp HHHHCC
T ss_pred HHHhcc
Confidence 777653
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=161.02 Aligned_cols=228 Identities=10% Similarity=0.025 Sum_probs=139.5
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccccc
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~ 544 (734)
..+|. ++.+|.|++ ++.|+|||+|||...... ..+...+..++++.||.|+.+|||+.++. .|
T Consensus 11 ~~~~~--~~~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~-------- 74 (274)
T 2qru_A 11 LANGA--TVTIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--KI-------- 74 (274)
T ss_dssp CTTSC--EEEEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS--CH--------
T ss_pred ccCCe--eEEEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC--CC--------
Confidence 34564 556777753 467999999998643322 23434455677778999999999986653 11
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh---cCCCceeEEEEcCCcchhcccccc---cc---Cc
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN---QRPELYGAALILVGALDMLRFNKF---TI---AY 615 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~---~~p~~~~a~v~~~~~~d~~~~~~~---~~---~~ 615 (734)
...++|+.++++||.++.. +++||+|+|+|+||.+++.++. ..|...+++|+.+|+.|....... .. ..
T Consensus 75 -p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~ 152 (274)
T 2qru_A 75 -DHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAISA 152 (274)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCCCS
T ss_pred -cHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccccH
Confidence 2247899999999987642 3789999999999999999986 346678889988888772110000 00 00
Q ss_pred cccccc-C------CCCCHHH-----------HHHHHhCCcc-----CCCCCCCCCccCCcEEEEecCCCCCCCChHHHH
Q psy4818 616 YSESEF-G------SPNNKTH-----------FHNLLSYSPL-----HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYK 672 (734)
Q Consensus 616 ~~~~~~-g------~~~~~~~-----------~~~~~~~sp~-----~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~ 672 (734)
.+...+ . ....... +..+...... ..+... .-...||+||++|+.|+.++..++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lpP~li~~G~~D~~~~~~~~~~ 231 (274)
T 2qru_A 153 KEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDE-TLKTFPPCFSTASSSDEEVPFRYSKK 231 (274)
T ss_dssp GGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHH-HHHTSCCEEEEEETTCSSSCTHHHHH
T ss_pred HHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChh-hhcCCCCEEEEEecCCCCcCHHHHHH
Confidence 000000 0 0000000 0001000000 001000 00234779999999999998887766
Q ss_pred HHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc--hHHhHHHHHHHHHHHHH
Q psy4818 673 FIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP--LMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 673 ~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~ 723 (734)
+.+++ +.++++++++++|++... .....+....+.+||.+
T Consensus 232 l~~~~-----------~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 232 IGRTI-----------PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp HHHHS-----------TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred HHHhC-----------CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 66544 345899999999998532 12223556678888864
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-17 Score=173.40 Aligned_cols=148 Identities=14% Similarity=0.052 Sum_probs=101.3
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEecccc--CCCCCcEEEEecCCCCCcCCcccc---HHHHHHHHhcCeEEEEEecccC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGAL--RNRRNPVIIYGYGGYGVSVLPTFS---ISRCMFLRHFNGIYAIPNIRGG 529 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~--~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG~ 529 (734)
..+..+...+++.||..+.++.+.|.... +.++.|+||++||..+....+... ..++..|+++||.|+++|+||.
T Consensus 23 ~~~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~ 102 (377)
T 1k8q_A 23 WGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred cCCCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence 35567888899999999988887664311 114689999999987665433211 1234467777999999999996
Q ss_pred CCCCchhhh-ccccccCCCc----hh-HHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEEEcC
Q psy4818 530 GELGEDWHN-AGRLLKKQNC----FD-DFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE---LYGAALILV 600 (734)
Q Consensus 530 ~~~g~~~~~-~~~~~~~~~~----~~-D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v~~~ 600 (734)
|.....-.. .......... .+ |+.++++++.++ .+.++++++|||+||.+++.++.++|+ .++++|+.+
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~ 180 (377)
T 1k8q_A 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence 644321000 0000000122 23 777788887765 345689999999999999999999998 789999998
Q ss_pred Ccch
Q psy4818 601 GALD 604 (734)
Q Consensus 601 ~~~d 604 (734)
|...
T Consensus 181 ~~~~ 184 (377)
T 1k8q_A 181 PVAT 184 (377)
T ss_dssp CCSC
T ss_pred Cchh
Confidence 8654
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=186.23 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=161.5
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccHHHH-HHHHhcCeEEEEEecccCCCCCch
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSISRC-MFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~-~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
..+.+.+++.||.+|.+.++.|++ .++.|+||+.||...... ...|.. .. .+|+++||+|+.+|+||.|+.+..
T Consensus 8 ~~~~v~i~~~DG~~L~~~~~~P~~---~~~~P~vv~~~~~g~~~~~~~~y~~-~~~~~la~~Gy~vv~~D~RG~G~S~g~ 83 (587)
T 3i2k_A 8 VASNVMVPMRDGVRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQS-TNWLEFVRDGYAVVIQDTRGLFASEGE 83 (587)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECC---SSCEEEEEEEESSCTTCHHHHHTTT-CCTHHHHHTTCEEEEEECTTSTTCCSC
T ss_pred EEEEEEEECCCCCEEEEEEEECCC---CCCeeEEEEECCcCCCccccccchh-hHHHHHHHCCCEEEEEcCCCCCCCCCc
Confidence 346789999999999999999976 357899999876322211 001211 12 556678999999999998877654
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc-chhccccccccC
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA-LDMLRFNKFTIA 614 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~-~d~~~~~~~~~~ 614 (734)
+.. .....+|+.++++||.++.+.+ .+|+++|+||||+++++++.++|+.++|+|+.++. .|+........+
T Consensus 84 ~~~------~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG 156 (587)
T 3i2k_A 84 FVP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGG 156 (587)
T ss_dssp CCT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTC
T ss_pred ccc------ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCC
Confidence 432 1346899999999999887766 79999999999999999999989999999999998 876542111111
Q ss_pred c-------ccccc---------c-CCCCCHHH-------------------------------------------HHHHH
Q psy4818 615 Y-------YSESE---------F-GSPNNKTH-------------------------------------------FHNLL 634 (734)
Q Consensus 615 ~-------~~~~~---------~-g~~~~~~~-------------------------------------------~~~~~ 634 (734)
. .|... + ..|...+. -.+++
T Consensus 157 ~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yw~ 236 (587)
T 3i2k_A 157 ALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQ 236 (587)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSCCHHHH
T ss_pred ccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCCChHHh
Confidence 0 12110 0 00110000 01233
Q ss_pred hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc--------
Q psy4818 635 SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP-------- 706 (734)
Q Consensus 635 ~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~-------- 706 (734)
..++...+.+ ++.| +|+++|..|..+ ..+.+++++|+.. ++ ..+++-|. .|+....
T Consensus 237 ~~s~~~~l~~----I~vP-vL~v~Gw~D~~~--~~~~~~~~~l~~~-------~~-~~L~iGPw-~H~~~~~~~g~~~~g 300 (587)
T 3i2k_A 237 SISLFERLGG----LATP-ALITAGWYDGFV--GESLRTFVAVKDN-------AD-ARLVVGPW-SHSNLTGRNADRKFG 300 (587)
T ss_dssp TTCCHHHHTT----CCCC-EEEEEEEECTTH--HHHHHHHHHHTTT-------SC-EEEEEEEE-ETTBCSSEETTEECC
T ss_pred cCChhhhhcc----CCCC-EEEEccCCCccc--hHHHHHHHHHhhc-------CC-CEEEECCc-cccCccccCCCcccC
Confidence 3344334443 7888 999999999764 4578899998766 43 35666554 3642110
Q ss_pred hHHhH---HHHHHHHHHHHHHcCCC
Q psy4818 707 LMKSI---EEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 707 ~~~~~---~~~~~~~~fl~~~l~~~ 728 (734)
....+ +....+++||+++|+..
T Consensus 301 ~~~~~~~~~~~~~~~~wFD~~Lkg~ 325 (587)
T 3i2k_A 301 IAATYPIQEATTMHKAFFDRHLRGE 325 (587)
T ss_dssp GGGSCCHHHHHHHHHHHHHHHHSCC
T ss_pred CccccccchhhHHHHHHHHHHhcCC
Confidence 01111 33367899999999754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=168.75 Aligned_cols=247 Identities=9% Similarity=0.002 Sum_probs=153.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccccc-CeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKF-PSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~-~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+..++|||||++|||+.+.+|. ..||++|+++|+....+...... ..+.|||||+.|+|+..+.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~--~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~------------- 102 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL------------- 102 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSS--CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT-------------
T ss_pred eecCcCCCCCCEEEEEEecCCC--ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC-------------
Confidence 4568999999999999987654 57999999999865444333222 3489999999999998522
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEE-------------------EEEecCCcEEEEEEe-cCCCCceEEEEeC
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLH-------------------SEVTDCGRYLLVSTS-NNTQGSDLHYFDL 282 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~-------------------~~~SpDG~~l~~~~~-~~~~~~~i~~~d~ 282 (734)
+||++++.++. ...++..+.. +... +.|||||+++++... .......||++|+
T Consensus 103 ---~l~~~d~~~~~--~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 103 ---NLMKVDLETLE--EQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp ---EEEEEETTTCC--EEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred ---cEEEEECCCCC--cEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 69999988764 2344443221 2111 345666666554321 1123368999999
Q ss_pred CCCCCCcccCCCCceeeeccccceEE-EEEe-cCCeEEEEeCCCCC--CceEEEEecCCCCCCCceEeecCCCCceeEEE
Q psy4818 283 HSLPDGKISGKFPLKTVIPGMDHHHE-IIAN-NGPELIVKTTKNAP--KGKVVTINLNNPCEKNWKTLIPEDENRTLDVV 358 (734)
Q Consensus 283 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~--~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 358 (734)
.++. ...+......... .|+| ||++|+|.++.... ..+|+.++++++. ++.++.......+...
T Consensus 176 ~~g~---------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 176 ETGE---------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHE 243 (396)
T ss_dssp TTCC---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEE
T ss_pred CCCc---------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccce
Confidence 8732 2333322222223 4999 88889998863211 2579999997654 4555553223334444
Q ss_pred EEe-eCCEEEEEEEeCCcee--EEEEECCCCceeeeeCCCCceEEeeccCc-ccceEEEEEecCCCC-------------
Q psy4818 359 AAV-ANNKLIVHYIQNVRSV--MDLHDLNTGKRLHSFPLDLGQITHISGRR-KYNEVFYGFTSFLQP------------- 421 (734)
Q Consensus 359 ~~~-~~~~l~~~~~~~~~~~--l~~~dl~~g~~~~~l~~~~g~v~~~~~~~-d~~~l~~~~ss~~~P------------- 421 (734)
.+. +++.|++....++... |++||+.+|+.......+ + .. +.+++ |++.+++..+ . .|
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~-~-~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGC-D-APVDVADADSYNIEN 318 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEEC-C-C----------CCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecC-C-cceeeccccccccCC
Confidence 444 4456777777666655 999999877753322223 2 22 56677 8875554332 2 33
Q ss_pred -ceEEEEeC
Q psy4818 422 -GTIYHCNI 429 (734)
Q Consensus 422 -~~~~~~d~ 429 (734)
..+|++|+
T Consensus 319 ~~~i~~~d~ 327 (396)
T 3c5m_A 319 DPFLYVLNT 327 (396)
T ss_dssp CCEEEEEET
T ss_pred CCcEEEEec
Confidence 68999999
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=164.88 Aligned_cols=237 Identities=13% Similarity=0.097 Sum_probs=139.7
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccC-CCCCchhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGG-GELGEDWH 537 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-~~~g~~~~ 537 (734)
.+...+++.||.+|.++.+.|++. ..++.|+||++||..+... .|.. .+..|+++||.|+++|+||+ |......
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~~~--~~~~-~~~~L~~~G~~Vi~~D~rGh~G~S~~~~- 81 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARRMD--HFAG-LAEYLSTNGFHVFRYDSLHHVGLSSGSI- 81 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGGGG--GGHH-HHHHHHTTTCCEEEECCCBCC--------
T ss_pred ceEEEEEcCCCCEEEEEEecCccc-CCCCCCEEEEecCCccCch--HHHH-HHHHHHHCCCEEEEeeCCCCCCCCCCcc-
Confidence 345567778999999888877531 1235689999999755433 3443 45677777999999999996 5332110
Q ss_pred hccccccC-CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc----cc
Q psy4818 538 NAGRLLKK-QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK----FT 612 (734)
Q Consensus 538 ~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----~~ 612 (734)
.... ....+|+.+++++|.+. +.++++++|+||||++++.++.+ | .++++|+.+|+.++..... ..
T Consensus 82 ----~~~~~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~ 152 (305)
T 1tht_A 82 ----DEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFD 152 (305)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSC
T ss_pred ----cceehHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhh
Confidence 0000 11246777788888643 34689999999999999999887 7 7788888887654321100 00
Q ss_pred ---cCccccc---cc-CCCCCHH-HHHHHHhCC------ccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHH
Q psy4818 613 ---IAYYSES---EF-GSPNNKT-HFHNLLSYS------PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678 (734)
Q Consensus 613 ---~~~~~~~---~~-g~~~~~~-~~~~~~~~s------p~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~ 678 (734)
....... .+ +...... ......... ....+.. +++| +||++|++|..||+.++.++++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vLii~G~~D~~vp~~~~~~l~~~i~ 227 (305)
T 1tht_A 153 YLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVAN----TSVP-LIAFTANNDDWVKQEEVYDMLAHIR 227 (305)
T ss_dssp GGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTT----CCSC-EEEEEETTCTTSCHHHHHHHHTTCT
T ss_pred hhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhh----cCCC-EEEEEeCCCCccCHHHHHHHHHhcC
Confidence 0000000 00 0000011 111111110 1112232 6677 9999999999999988877766542
Q ss_pred hhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
...+++++++++||..........+.+..+..|...
T Consensus 228 ---------~~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~ 263 (305)
T 1tht_A 228 ---------TGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIA 263 (305)
T ss_dssp ---------TCCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHH
Confidence 234789999999999853322222334444445443
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=156.79 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=133.7
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEE--ecccCCCCCchhhhcc-ccccC----CCchhHHHHHHHH
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIP--NIRGGGELGEDWHNAG-RLLKK----QNCFDDFQAAAEY 558 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~--~~rG~~~~g~~~~~~~-~~~~~----~~~~~D~~~~~~~ 558 (734)
++.|+||++||+.+... .|. .+...|++ ||.|+++ |.||.|.. .|.... ..... ...++++.+.+++
T Consensus 36 ~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~-g~~v~~~~~d~~g~g~s--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNEL--DLL-PLAEIVDS-EASVLSVRGNVLENGMP--RFFRRLAEGIFDEEDLIFRTKELNEFLDE 109 (226)
T ss_dssp TTSCEEEEECCTTCCTT--TTH-HHHHHHHT-TSCEEEECCSEEETTEE--ESSCEEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh--HHH-HHHHHhcc-CceEEEecCcccCCcch--hhccccCccCcChhhHHHHHHHHHHHHHH
Confidence 57899999999865543 233 34567776 9999999 88885532 121110 00001 1224455666666
Q ss_pred HHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCc
Q psy4818 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSP 638 (734)
Q Consensus 559 l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 638 (734)
+.++..+++++++++|+|+||++++.++.++|+.++++|+.+|..+...
T Consensus 110 ~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------------------- 158 (226)
T 2h1i_A 110 AAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------------------------- 158 (226)
T ss_dssp HHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------------------------
T ss_pred HHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------------------------
Confidence 6676667889999999999999999999999999999999998764311
Q ss_pred cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHH
Q psy4818 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIY 718 (734)
Q Consensus 639 ~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 718 (734)
...... .+.| +|+++|++|..+++.++.++++.+++. +.++++ +++++||.+. .+....+.
T Consensus 159 -~~~~~~---~~~p-~l~~~G~~D~~~~~~~~~~~~~~l~~~-------~~~~~~-~~~~~gH~~~------~~~~~~~~ 219 (226)
T 2h1i_A 159 -MQLANL---AGKS-VFIAAGTNDPICSSAESEELKVLLENA-------NANVTM-HWENRGHQLT------MGEVEKAK 219 (226)
T ss_dssp -CCCCCC---TTCE-EEEEEESSCSSSCHHHHHHHHHHHHTT-------TCEEEE-EEESSTTSCC------HHHHHHHH
T ss_pred -cccccc---cCCc-EEEEeCCCCCcCCHHHHHHHHHHHHhc-------CCeEEE-EeCCCCCCCC------HHHHHHHH
Confidence 001110 2444 999999999999999999999999987 778888 9999999884 24456788
Q ss_pred HHHHHHc
Q psy4818 719 VFLMKSL 725 (734)
Q Consensus 719 ~fl~~~l 725 (734)
+||.++|
T Consensus 220 ~~l~~~l 226 (226)
T 2h1i_A 220 EWYDKAF 226 (226)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998765
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-18 Score=179.57 Aligned_cols=149 Identities=10% Similarity=-0.095 Sum_probs=110.8
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC------------cccc---HHHHHHHHhcCe
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL------------PTFS---ISRCMFLRHFNG 519 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~------------~~~~---~~~~~~l~~~G~ 519 (734)
..+..+.+.+++.+|..|+++++.|++. .++.|+||++||..+.... ..|. ..++..|+++||
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~ 160 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGY 160 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTC
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCC
Confidence 4678899999999999999999999864 4679999999997543210 0111 134577888899
Q ss_pred EEEEEecccCCCCCchhhh--------ccc----cccCC----CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHH
Q psy4818 520 IYAIPNIRGGGELGEDWHN--------AGR----LLKKQ----NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVG 583 (734)
Q Consensus 520 ~v~~~~~rG~~~~g~~~~~--------~~~----~~~~~----~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~ 583 (734)
+|+++|+||.|+.+..-.. ... ...+. ....|+.+++++|.++..+|++||+|+|+|+||++++
T Consensus 161 ~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al 240 (391)
T 3g8y_A 161 VAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMM 240 (391)
T ss_dssp EEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHH
Confidence 9999999997766532100 000 00011 1237899999999999899999999999999999999
Q ss_pred HHHhcCCCceeEEEEcCCcchhc
Q psy4818 584 ACLNQRPELYGAALILVGALDML 606 (734)
Q Consensus 584 ~~~~~~p~~~~a~v~~~~~~d~~ 606 (734)
.++.+. +.++++|+.+++..+.
T Consensus 241 ~~a~~~-~~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 241 VLGVLD-KDIYAFVYNDFLCQTQ 262 (391)
T ss_dssp HHHHHC-TTCCEEEEESCBCCHH
T ss_pred HHHHcC-CceeEEEEccCCCCcc
Confidence 998875 4678898888877664
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-18 Score=179.74 Aligned_cols=149 Identities=11% Similarity=-0.057 Sum_probs=111.0
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC------------Ccccc---HHHHHHHHhcC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV------------LPTFS---ISRCMFLRHFN 518 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~------------~~~~~---~~~~~~l~~~G 518 (734)
...+..+.+.+++.+|.+|+++++.|++. .++.|+||++||+.+... ...|. ..++..|+++|
T Consensus 87 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~G 164 (398)
T 3nuz_A 87 REGYRLEKWEFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEG 164 (398)
T ss_dssp CSSEEEEEEEECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTT
T ss_pred cCCEEEEEEEEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCC
Confidence 35678899999999999999999999864 468999999999755322 11121 13567788899
Q ss_pred eEEEEEecccCCCCCchhhhcc----------------ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHH
Q psy4818 519 GIYAIPNIRGGGELGEDWHNAG----------------RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLV 582 (734)
Q Consensus 519 ~~v~~~~~rG~~~~g~~~~~~~----------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~ 582 (734)
|+|+++|+||.|+.+....... ..........|+.+++++|.++..+|++||+|+|+|+||+++
T Consensus 165 y~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a 244 (398)
T 3nuz_A 165 YIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPM 244 (398)
T ss_dssp CEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHH
Confidence 9999999999776653321000 000111234799999999999888999999999999999999
Q ss_pred HHHHhcCCCceeEEEEcCCcchh
Q psy4818 583 GACLNQRPELYGAALILVGALDM 605 (734)
Q Consensus 583 ~~~~~~~p~~~~a~v~~~~~~d~ 605 (734)
+.++...| .++++|+.+++..+
T Consensus 245 ~~~aa~~~-~i~a~v~~~~~~~~ 266 (398)
T 3nuz_A 245 MVLGTLDT-SIYAFVYNDFLCQT 266 (398)
T ss_dssp HHHHHHCT-TCCEEEEESCBCCH
T ss_pred HHHHhcCC-cEEEEEEecccccc
Confidence 99988755 66888886665543
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=157.95 Aligned_cols=191 Identities=14% Similarity=0.037 Sum_probs=119.0
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhc--CeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
.|+|||+||..++..... ...+.+++.++ ||.|++||++|+| . +..+.++.++.+ .
T Consensus 2 mptIl~lHGf~ss~~s~k-~~~l~~~~~~~~~~~~v~~pdl~~~g---~----------------~~~~~l~~~~~~--~ 59 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAK-ATTFKSWLQQHHPHIEMQIPQLPPYP---A----------------EAAEMLESIVMD--K 59 (202)
T ss_dssp -CEEEEECCTTCCTTCHH-HHHHHHHHHHHCTTSEEECCCCCSSH---H----------------HHHHHHHHHHHH--H
T ss_pred CcEEEEeCCCCCCCCccH-HHHHHHHHHHcCCCcEEEEeCCCCCH---H----------------HHHHHHHHHHHh--c
Confidence 389999999543332211 12234566554 4999999999843 2 233334444433 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCC--CCHHHHHHHHhCCccCCCC
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSP--NNKTHFHNLLSYSPLHNIK 643 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~sp~~~~~ 643 (734)
.+++++|+|+|+||++++.++.++|+...+++..++..+........... ...+.+ .......... +....+.
T Consensus 60 ~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~ 134 (202)
T 4fle_A 60 AGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQN---PYTGQKYVLESRHIYDLK--AMQIEKL 134 (202)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEEC---TTTCCEEEECHHHHHHHH--TTCCSSC
T ss_pred CCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhcc---ccccccccchHHHHHHHH--hhhhhhh
Confidence 45789999999999999999999999877777776665544322111000 001111 1122222222 2233333
Q ss_pred CCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 644 VPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 644 ~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
. ++.| +||+||++|.+||++++.++++ . +++.+++++||.+.... +....+.+||.-
T Consensus 135 ~----~~~P-~LiihG~~D~~Vp~~~s~~l~~---~-----------~~l~i~~g~~H~~~~~~----~~~~~I~~FL~~ 191 (202)
T 4fle_A 135 E----SPDL-LWLLQQTGDEVLDYRQAVAYYT---P-----------CRQTVESGGNHAFVGFD----HYFSPIVTFLGL 191 (202)
T ss_dssp S----CGGG-EEEEEETTCSSSCHHHHHHHTT---T-----------SEEEEESSCCTTCTTGG----GGHHHHHHHHTC
T ss_pred c----cCce-EEEEEeCCCCCCCHHHHHHHhh---C-----------CEEEEECCCCcCCCCHH----HHHHHHHHHHhh
Confidence 3 6677 9999999999999999877652 1 36888999999986432 345668899875
Q ss_pred HcCCC
Q psy4818 724 SLGLK 728 (734)
Q Consensus 724 ~l~~~ 728 (734)
..++.
T Consensus 192 a~~l~ 196 (202)
T 4fle_A 192 ATALE 196 (202)
T ss_dssp CCCTT
T ss_pred hhhcc
Confidence 54543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-16 Score=179.04 Aligned_cols=290 Identities=14% Similarity=0.099 Sum_probs=180.0
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCe--EEEeCCCCcC----CC-Cc-----EEEeeEEeCCCCcEEEEEEe
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGST--EVFLDPNKLS----KD-GT-----TALKLYAFSDNGKHFAYCLS 161 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~l~d~~~~~----~~-~~-----~~~~~~~~SPDG~~la~~~~ 161 (734)
..+...|+.++|...++ | +.+..++.. +++++.+.+. .. +. ..+..++|||| ++|+|+.+
T Consensus 29 ~~~~w~g~~~~~~~~~~------i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~ 100 (706)
T 2z3z_A 29 VGLQWMGDNYVFIEGDD------L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ 100 (706)
T ss_dssp TTCEEETTEEEEEETTE------E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET
T ss_pred CCCcCcCCeEEEEeCCc------E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC
Confidence 33444477777655322 4 566667777 7888876441 11 11 34778999999 88999864
Q ss_pred CCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCC-----CC
Q psy4818 162 KSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGT-----EQ 236 (734)
Q Consensus 162 ~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t-----~~ 236 (734)
..|++||+.+|+.............++|||||+.|+|+.. ..|+++++.+ +.
T Consensus 101 ------~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~-----------------~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 101 ------GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRN-----------------HNLYIARGGKLGEGMSR 157 (706)
T ss_dssp ------TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEET-----------------TEEEEEECBCTTSCCCC
T ss_pred ------CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEEC-----------------CeEEEEecCcccccCCC
Confidence 3799999999986544433334578999999999999642 2799999987 54
Q ss_pred CCCeeEEecCCCCe------------eEEEEEEecCCcEEEEEEecCC-----------------------------CCc
Q psy4818 237 DKDIPVVEFPNGRS------------LGLHSEVTDCGRYLLVSTSNNT-----------------------------QGS 275 (734)
Q Consensus 237 ~~~~~v~~~~~~~~------------~~~~~~~SpDG~~l~~~~~~~~-----------------------------~~~ 275 (734)
.. .+........ ....+.|||||++|++...+.. ...
T Consensus 158 ~~--~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 158 AI--AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CE--ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred cE--EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 32 1111111110 1246899999999998863211 226
Q ss_pred eEEEEeCCCCCCCcccCCCCceeeecc--ccc-eEE-EEEecCCeEEEEeC-CCCCCceEEEEecCCCCCCCceEeecCC
Q psy4818 276 DLHYFDLHSLPDGKISGKFPLKTVIPG--MDH-HHE-IIANNGPELIVKTT-KNAPKGKVVTINLNNPCEKNWKTLIPED 350 (734)
Q Consensus 276 ~i~~~d~~~~~~~~l~~~~~~~~l~~~--~~~-~~~-~~s~dg~~l~~~s~-~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 350 (734)
.|+++|++++. ...+... ... ... .|+|||+.|++.+. +......|+++|++++. .++.+..+.
T Consensus 236 ~l~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~ 304 (706)
T 2z3z_A 236 TVGIYHLATGK---------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVET 304 (706)
T ss_dssp EEEEEETTTTE---------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEE
T ss_pred EEEEEECCCCc---------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEcc
Confidence 89999998832 1122211 111 122 39999999988653 33445689999998772 134444322
Q ss_pred CCc---eeEEEEEee--CCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEe-eccCcccceEEEEEecCCCC--c
Q psy4818 351 ENR---TLDVVAAVA--NNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITH-ISGRRKYNEVFYGFTSFLQP--G 422 (734)
Q Consensus 351 ~~~---~~~~~~~~~--~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~-~~~~~d~~~l~~~~ss~~~P--~ 422 (734)
... .+..+.+.. ++.+++....++..+|+.+++ +|+.++.++.....+.. +.++++++.+++..+. ..| .
T Consensus 305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-~~~~~~ 382 (706)
T 2z3z_A 305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-ASPLER 382 (706)
T ss_dssp CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-SCTTCB
T ss_pred CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-CCCceE
Confidence 111 112333443 467777777777788999997 56666777765544544 6788999888776654 333 4
Q ss_pred eEEEEeC
Q psy4818 423 TIYHCNI 429 (734)
Q Consensus 423 ~~~~~d~ 429 (734)
.+|.+|+
T Consensus 383 ~l~~~d~ 389 (706)
T 2z3z_A 383 HFYCIDI 389 (706)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 7899998
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=182.30 Aligned_cols=298 Identities=9% Similarity=-0.004 Sum_probs=177.6
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC----CceE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG----SDWN 168 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g----~~~~ 168 (734)
...++++| .+++... + ..+++.+..++..+.+++...... ..+..++|||||++|||+.+.++ +...
T Consensus 20 ~~~~s~dg-~~~~~~~---d--~~i~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQ-EYLHQSA---D--NNIVLYNIETGQSYTILSNRTMKS---VNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSS-EEEEECT---T--SCEEEEESSSCCEEEEECHHHHHT---TTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCC-eEEEEcC---C--CCEEEEEcCCCcEEEEEccccccc---cceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 34555788 4444331 2 247777777788888887543211 12568999999999999987443 2347
Q ss_pred EEEEEECCCCCc---ccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 169 TLHIKDVDTGKD---YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 169 ~l~v~dl~~g~~---~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
+|++||+++|+. .+.. . ....++|||||+.|+|+.. ..|+++++.++... .+...
T Consensus 91 ~i~~~d~~~g~~~~~~~l~-~--~~~~~~~SPDG~~la~~~~-----------------~~i~~~~~~~g~~~--~l~~~ 148 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNELP-R--PIQYLCWSPVGSKLAYVYQ-----------------NNIYLKQRPGDPPF--QITFN 148 (719)
T ss_dssp EEEEEETTTTEECCSSCCC-S--SBCCEEECSSTTCEEEEET-----------------TEEEEESSTTSCCE--ECCCC
T ss_pred EEEEEECCCCccccceecC-c--ccccceECCCCCEEEEEEC-----------------CeEEEEeCCCCCcE--EEecC
Confidence 899999999986 3322 2 2368999999999999862 17999998876432 11111
Q ss_pred CCCC----------------eeEEEEEEecCCcEEEEEEecCCC------------------------------CceEEE
Q psy4818 246 PNGR----------------SLGLHSEVTDCGRYLLVSTSNNTQ------------------------------GSDLHY 279 (734)
Q Consensus 246 ~~~~----------------~~~~~~~~SpDG~~l~~~~~~~~~------------------------------~~~i~~ 279 (734)
.... .....++|||||++|++...+... ...|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 1000 001368999999999998754221 138899
Q ss_pred EeCCCCCCC---cccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEe----cCCCCCCCceEeec---
Q psy4818 280 FDLHSLPDG---KISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTIN----LNNPCEKNWKTLIP--- 348 (734)
Q Consensus 280 ~d~~~~~~~---~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d----~~~~~~~~~~~l~~--- 348 (734)
+|++++... .+. . ...+.........+ |||||+.++...++.....+|+++| +++++ +..++.
T Consensus 229 ~d~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---~~~~~~~~~ 302 (719)
T 1z68_A 229 IDTTYPAYVGPQEVP--V-PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD---CPKTQEHIE 302 (719)
T ss_dssp EESSCHHHHCCEECC--C-CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---CCGGGEEEE
T ss_pred EECCCCCccceeEcc--C-CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc---eEEEEeccc
Confidence 999873210 000 0 00011111122233 9999654444445555557899999 77665 344442
Q ss_pred -CCCCcee----EEEEE-eeCCEEEEE-EEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEec--C-
Q psy4818 349 -EDENRTL----DVVAA-VANNKLIVH-YIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTS--F- 418 (734)
Q Consensus 349 -~~~~~~~----~~~~~-~~~~~l~~~-~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss--~- 418 (734)
.....+- ....+ ++++.+++. ...++..+|+++++.+++ .+.++.....+..+..+ +++.+++..+. .
T Consensus 303 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~ 380 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEY 380 (719)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGC
T ss_pred ccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCC
Confidence 2211111 02233 454556653 446677899999997666 46676544445455555 77788776643 1
Q ss_pred CCCceEEEEeC
Q psy4818 419 LQPGTIYHCNI 429 (734)
Q Consensus 419 ~~P~~~~~~d~ 429 (734)
..-..+|.+++
T Consensus 381 ~~~~~l~~~~~ 391 (719)
T 1z68_A 381 PGRRNIYRISI 391 (719)
T ss_dssp TTCBEEEEEEC
T ss_pred CceEEEEEEeC
Confidence 12245788777
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=157.44 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=134.9
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEEeccccC-CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIHRVGALR-NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~-~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
..+.++...++.. +.+++|+.... +++.|+||++||+.+.. ..|. .+...|+++||.|+++|+||++
T Consensus 21 g~~~v~~~~~~~~------~~~~~p~~~~~~g~~~p~vv~~HG~~~~~--~~~~-~~~~~l~~~G~~v~~~d~~~s~--- 88 (258)
T 2fx5_A 21 GPYTVSSQSEGPS------CRIYRPRDLGQGGVRHPVILWGNGTGAGP--STYA-GLLSHWASHGFVVAAAETSNAG--- 88 (258)
T ss_dssp CSCCEEEEEETTT------EEEEEESSTTGGGCCEEEEEEECCTTCCG--GGGH-HHHHHHHHHTCEEEEECCSCCT---
T ss_pred CCcceeeeeccCc------EEEEeCCCCcccCCCceEEEEECCCCCCc--hhHH-HHHHHHHhCCeEEEEecCCCCc---
Confidence 3445555544322 78888875321 23789999999987643 2333 3456677779999999999641
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHc---------CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcch
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINK---------KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---------~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d 604 (734)
..+|+..+++++.+. ..++.++++++|+|+||++++.++ .++.++++|+..|...
T Consensus 89 --------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~ 152 (258)
T 2fx5_A 89 --------------TGREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTL 152 (258)
T ss_dssp --------------TSHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCS
T ss_pred --------------cHHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCccc
Confidence 123566666666542 246778999999999999999887 3557899988776432
Q ss_pred hccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH-HHHHHHHHHhhhCC
Q psy4818 605 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH-SYKFIATLQEKIGS 683 (734)
Q Consensus 605 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~-~~~~~~~L~~~~~~ 683 (734)
. .+... ..+.. ++.| +|+++|++|..+++.. +.+++++ .
T Consensus 153 ~-----------------~~~~~------------~~~~~----i~~P-~lii~G~~D~~~~~~~~~~~~~~~---~--- 192 (258)
T 2fx5_A 153 G-----------------LGHDS------------ASQRR----QQGP-MFLMSGGGDTIAFPYLNAQPVYRR---A--- 192 (258)
T ss_dssp S-----------------TTCCG------------GGGGC----CSSC-EEEEEETTCSSSCHHHHTHHHHHH---C---
T ss_pred c-----------------cccch------------hhhcc----CCCC-EEEEEcCCCcccCchhhHHHHHhc---c---
Confidence 1 00000 11222 4556 9999999999999886 6666655 3
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 684 LPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 684 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+.++++++++++||.+..... .+....+.+||.++|.
T Consensus 193 ----~~~~~~~~~~g~~H~~~~~~~--~~~~~~i~~fl~~~l~ 229 (258)
T 2fx5_A 193 ----NVPVFWGERRYVSHFEPVGSG--GAYRGPSTAWFRFQLM 229 (258)
T ss_dssp ----SSCEEEEEESSCCTTSSTTTC--GGGHHHHHHHHHHHHH
T ss_pred ----CCCeEEEEECCCCCccccchH--HHHHHHHHHHHHHHhc
Confidence 557899999999998865433 2456678899998874
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=165.78 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=100.9
Q ss_pred CceEEEEEEEcCC--C--cEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC---------ccccHHHHHHHHhcCeEEE
Q psy4818 456 LFQTKQVYFRSKD--G--TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL---------PTFSISRCMFLRHFNGIYA 522 (734)
Q Consensus 456 ~~~~~~~~~~s~d--g--~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~---------~~~~~~~~~~l~~~G~~v~ 522 (734)
.....++.|.+.+ | ..+.++++.|.+....++.|+||++||+.+.... ..+.. ++..|+++||+|+
T Consensus 43 ~v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~~V~ 121 (397)
T 3h2g_A 43 NVRVAEFTYATIGVEGEPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDP-LVTRLASQGYVVV 121 (397)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSH-HHHTTGGGTCEEE
T ss_pred CeEEEEEEEEecCCCCCeEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHH-HHHHHHHCCCEEE
Confidence 4467788887764 4 3688999999886556789999999998765432 12333 3455666799999
Q ss_pred EEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc-CCCCCCcEEEEEcChHHHHHHHHHh-cCC----C-ceeE
Q psy4818 523 IPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK-KYTKPKYITIMGGSNGGLLVGACLN-QRP----E-LYGA 595 (734)
Q Consensus 523 ~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~-~~p----~-~~~a 595 (734)
++|+||.|+.+...............+.|.+.++..+.++ +..++++++++|||+||+++++++. ..+ + .+.+
T Consensus 122 ~~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~ 201 (397)
T 3h2g_A 122 GSDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVA 201 (397)
T ss_dssp EECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEE
T ss_pred EecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEE
Confidence 9999997765322111100000113455666666666554 5556789999999999999988862 222 2 5788
Q ss_pred EEEcCCcchhc
Q psy4818 596 ALILVGALDML 606 (734)
Q Consensus 596 ~v~~~~~~d~~ 606 (734)
+++.++..|+.
T Consensus 202 ~~~~~~~~~l~ 212 (397)
T 3h2g_A 202 SAPISGPYALE 212 (397)
T ss_dssp EEEESCCSSHH
T ss_pred EecccccccHH
Confidence 88888877764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-16 Score=179.03 Aligned_cols=298 Identities=12% Similarity=0.083 Sum_probs=181.7
Q ss_pred ccCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCc----e
Q psy4818 92 KYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSD----W 167 (734)
Q Consensus 92 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~----~ 167 (734)
....+++||.+++ .. . +. .+++.+..++....+++..... ...+..++|||||++|||+....+.. .
T Consensus 20 ~~~~~spdg~~~~-~~-~--dg--~i~~~d~~~g~~~~~~~~~~~~---~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 20 PEAKWISDTEFIY-RE-Q--KG--TVRLWNVETNTSTVLIEGKKIE---SLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCBSSSSCBCC-CC-S--SS--CEEEBCGGGCCCEEEECTTTTT---TTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred cccEEcCCCcEEE-Ee-C--CC--CEEEEECCCCcEEEEecccccc---ccccceEEECCCCCEEEEEecCccceeecce
Confidence 3456778998554 32 1 22 4666666667777777654321 11367899999999999998654322 2
Q ss_pred EEEEEEECCCCCccccccccc---ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe
Q psy4818 168 NTLHIKDVDTGKDYPEVLKNV---KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE 244 (734)
Q Consensus 168 ~~l~v~dl~~g~~~~~~~~~~---~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~ 244 (734)
.+|++||+++|+......... ....++|||||+.|+|.+. ..||++++.++.. +.+..
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-----------------~~i~~~~~~~g~~--~~~~~ 151 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-----------------NNIYYCAHVGKQA--IRVVS 151 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-----------------TEEEEESSSSSCC--EEEEC
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-----------------CeEEEEECCCCce--EEEec
Confidence 589999999998532222111 1367999999999999873 2699999887643 23333
Q ss_pred cCCCCe----------------eEEEEEEecCCcEEEEEEecCCC------------------------------CceEE
Q psy4818 245 FPNGRS----------------LGLHSEVTDCGRYLLVSTSNNTQ------------------------------GSDLH 278 (734)
Q Consensus 245 ~~~~~~----------------~~~~~~~SpDG~~l~~~~~~~~~------------------------------~~~i~ 278 (734)
...... ....++|||||++|++....... ...|+
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~ 231 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH 231 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence 211111 11468999999999998754210 13899
Q ss_pred EEeCCCCCCCcccCCCCceeeecc------ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-
Q psy4818 279 YFDLHSLPDGKISGKFPLKTVIPG------MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED- 350 (734)
Q Consensus 279 ~~d~~~~~~~~l~~~~~~~~l~~~------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~- 350 (734)
++|+.++.. ...+... ...... .|||||+.|++.+++......|+++|++++. ...++...
T Consensus 232 ~~d~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~ 300 (723)
T 1xfd_A 232 VIGLNGPTH--------DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDES 300 (723)
T ss_dssp EEESSSSCC--------CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEEC
T ss_pred EEECCCCce--------eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEecc
Confidence 999988421 1122211 111222 3999999887777765556789999998775 34443321
Q ss_pred CCcee---EEEEE-eeCCEEEEE-EEeCC----ceeEEEEE-CCCCce--eeeeCCCCceEEe-eccCcccceEEEEEec
Q psy4818 351 ENRTL---DVVAA-VANNKLIVH-YIQNV----RSVMDLHD-LNTGKR--LHSFPLDLGQITH-ISGRRKYNEVFYGFTS 417 (734)
Q Consensus 351 ~~~~~---~~~~~-~~~~~l~~~-~~~~~----~~~l~~~d-l~~g~~--~~~l~~~~g~v~~-~~~~~d~~~l~~~~ss 417 (734)
...+. ....+ ++++.+++. ...++ ..+|+++| ..+++. .+.++.....+.. +.+++|++.+++..+.
T Consensus 301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence 11110 12233 455567776 55555 56899999 544441 4566643333333 5788999988776544
Q ss_pred CCCCc--eEEEEeC
Q psy4818 418 FLQPG--TIYHCNI 429 (734)
Q Consensus 418 ~~~P~--~~~~~d~ 429 (734)
..|. .+|.+++
T Consensus 381 -~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 381 -DLPRRRQLYSANT 393 (723)
T ss_dssp -SCTTCCEEEEECS
T ss_pred -CCCcceEEEEEeC
Confidence 2233 4666665
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=155.21 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=134.4
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHh--cCeEEEEEecccC------
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH--FNGIYAIPNIRGG------ 529 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~------ 529 (734)
..+.+.|.+ ..+...++.|+. ...++||++||..+.... |.. +...+.. .++.+++|+-+-.
T Consensus 14 ~~~~~~~~~---~~l~y~ii~P~~----~~~~~VI~LHG~G~~~~d--l~~-l~~~l~~~~~~~~~i~P~Ap~~~~~~~~ 83 (246)
T 4f21_A 14 GTENLYFQS---NAMNYELMEPAK----QARFCVIWLHGLGADGHD--FVD-IVNYFDVSLDEIRFIFPHADIIPVTINM 83 (246)
T ss_dssp ------------CCCCEEEECCSS----CCCEEEEEEEC--CCCCC--GGG-GGGGCCSCCTTEEEEEECGGGSCTTTHH
T ss_pred ccceEEEec---CCcCceEeCCCC----cCCeEEEEEcCCCCCHHH--HHH-HHHHhhhcCCCeEEEeCCCCccccccCC
Confidence 345565654 346777888864 456799999995333222 221 1222321 2788888875321
Q ss_pred CCCCchhhhcccccc-------CCCchhHHHHHHHHHHH---cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 530 GELGEDWHNAGRLLK-------KQNCFDDFQAAAEYMIN---KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 530 ~~~g~~~~~~~~~~~-------~~~~~~D~~~~~~~l~~---~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
+..|..|+....... ....+....+.++.+++ +.-++++||++.|+|+||.+++.++.++|+.|+++|+.
T Consensus 84 ~~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~ 163 (246)
T 4f21_A 84 GMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMAL 163 (246)
T ss_dssp HHHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEE
T ss_pred CCCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceeh
Confidence 112345654321111 11123333344444432 23489999999999999999999999999999999999
Q ss_pred CCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q psy4818 600 VGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679 (734)
Q Consensus 600 ~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~ 679 (734)
+|.+..... +- ... .... .++| +|++||+.|++||+..+.++++.|++
T Consensus 164 sG~lp~~~~------------~~-----------~~~---~~~~-----~~~P-vl~~HG~~D~vVp~~~~~~~~~~L~~ 211 (246)
T 4f21_A 164 STYLPAWDN------------FK-----------GKI---TSIN-----KGLP-ILVCHGTDDQVLPEVLGHDLSDKLKV 211 (246)
T ss_dssp SCCCTTHHH------------HS-----------TTC---CGGG-----TTCC-EEEEEETTCSSSCHHHHHHHHHHHHT
T ss_pred hhccCcccc------------cc-----------ccc---cccc-----cCCc-hhhcccCCCCccCHHHHHHHHHHHHH
Confidence 885421110 00 000 0000 2344 99999999999999999999999999
Q ss_pred hhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+ |.++++..|++.||.+. .++..++.+||.+.|++
T Consensus 212 ~-------g~~v~~~~y~g~gH~i~------~~~l~~~~~fL~k~l~l 246 (246)
T 4f21_A 212 S-------GFANEYKHYVGMQHSVC------MEEIKDISNFIAKTFKI 246 (246)
T ss_dssp T-------TCCEEEEEESSCCSSCC------HHHHHHHHHHHHHHTTC
T ss_pred C-------CCCeEEEEECCCCCccC------HHHHHHHHHHHHHHhCC
Confidence 8 99999999999999875 24456789999999864
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=147.19 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=120.0
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
++.|+||++||..+....+.+. .+...|+++||.|+.+|+||.|... .. .......+++.++++++.+..
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~-~~~~~l~~~g~~v~~~d~~g~g~s~---~~----~~~~~~~~~~~~~~~~~~~~~-- 71 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVT-ALAEVAERLGWTHERPDFTDLDARR---DL----GQLGDVRGRLQRLLEIARAAT-- 71 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHH-HHHHHHHHTTCEEECCCCHHHHTCG---GG----CTTCCHHHHHHHHHHHHHHHH--
T ss_pred CCCcEEEEEeCCCCCccHHHHH-HHHHHHHHCCCEEEEeCCCCCCCCC---CC----CCCCCHHHHHHHHHHHHHhcC--
Confidence 4678999999986554332222 3456777789999999999954321 11 111122334455666666543
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCC
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 645 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p 645 (734)
+.++++++|+|+||.+++.++.++| ++++|+.+|..+...+. . ...
T Consensus 72 ~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~~---------------~----------------~~~- 117 (176)
T 2qjw_A 72 EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPLP---------------A----------------LDA- 117 (176)
T ss_dssp TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTBC---------------C----------------CCC-
T ss_pred CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccccC---------------c----------------ccc-
Confidence 4578999999999999999999988 89999988876542110 0 222
Q ss_pred CCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 646 ~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
++.| +|+++|++|..||+.++.++++.+ . ++++++ ++||.+... ..+....+.+||.
T Consensus 118 ---~~~P-~l~i~g~~D~~~~~~~~~~~~~~~-~-----------~~~~~~-~~~H~~~~~---~~~~~~~i~~fl~ 174 (176)
T 2qjw_A 118 ---AAVP-ISIVHAWHDELIPAADVIAWAQAR-S-----------ARLLLV-DDGHRLGAH---VQAASRAFAELLQ 174 (176)
T ss_dssp ---CSSC-EEEEEETTCSSSCHHHHHHHHHHH-T-----------CEEEEE-SSCTTCTTC---HHHHHHHHHHHHH
T ss_pred ---cCCC-EEEEEcCCCCccCHHHHHHHHHhC-C-----------ceEEEe-CCCcccccc---HHHHHHHHHHHHH
Confidence 4556 999999999999999998888876 2 267777 899998422 2355666777775
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=158.00 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=141.1
Q ss_pred eEEEEEEEcCC-CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHh-cCeEEEEEecccCCCCC--
Q psy4818 458 QTKQVYFRSKD-GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH-FNGIYAIPNIRGGGELG-- 533 (734)
Q Consensus 458 ~~~~~~~~s~d-g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~g-- 533 (734)
..+.+.+.|.. |.++.+++++|+++++++++|+|++.||+..... ....+...+++ .+.+|+.++++++..+.
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~~---~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~ 88 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDR---LDDELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHH---CCHHHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCCCCCCCCCEEEEeeChhHHHH---HHHHHHHHhccCCCeEEEEEcCCCCCcCccc
Confidence 57788888876 6799999999999876778998877777542211 11223344443 57888888987643211
Q ss_pred ---chhhhcc-c-----------cc-cCCCchhHHHH--HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeE
Q psy4818 534 ---EDWHNAG-R-----------LL-KKQNCFDDFQA--AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 595 (734)
Q Consensus 534 ---~~~~~~~-~-----------~~-~~~~~~~D~~~--~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a 595 (734)
.++.... . .. .+...+.+++. .+.++.++..+|++|++|+|+|+||++++.++.+ |++|++
T Consensus 89 ~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~ 167 (278)
T 2gzs_A 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (278)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCe
Confidence 1221110 0 00 01112333331 2333334445889999999999999999999999 999999
Q ss_pred EEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCC--------CC
Q psy4818 596 ALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRV--------PP 667 (734)
Q Consensus 596 ~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v--------~~ 667 (734)
+++.+|.+.+.. ......+..+.+- . ...++++|.+|+.|..+ +.
T Consensus 168 ~~~~s~~~~~~~-------------------~~~~~~~~~~~~~----~----~~~~~i~l~~G~~d~~~~~~~~~~~~~ 220 (278)
T 2gzs_A 168 YYSASPSLGRGY-------------------DALLSRVTAVEPL----Q----FCTKHLAIMEGSATQGDNRETHAVGVL 220 (278)
T ss_dssp EEEESGGGSTTH-------------------HHHHHHHHTSCTT----T----TTTCEEEEEECCC-----------CHH
T ss_pred EEEeCcchhcCc-------------------chHHHHHHHhhcc----C----CCCCcEEEEecCccccccccchhhhhH
Confidence 999998653211 0111122222210 1 12234999999999874 47
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.++.+++++|++. |.++++.++++++|++.. .....+.+.||.+
T Consensus 221 ~~~~~~~~~L~~~-------g~~~~~~~~~g~~H~~~~-----~~~~~~~l~fl~~ 264 (278)
T 2gzs_A 221 SKIHTTLTILKDK-------GVNAVFWDFPNLGHGPMF-----NASFRQALLDISG 264 (278)
T ss_dssp HHHHHHHHHHHHT-------TCCEEEEECTTCCHHHHH-----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-------CCeeEEEEcCCCCccchh-----HHHHHHHHHHHhh
Confidence 8999999999998 999999999999997532 1223445667764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-14 Score=147.12 Aligned_cols=257 Identities=9% Similarity=0.012 Sum_probs=162.9
Q ss_pred eeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC-CCcccccccc--ccc
Q psy4818 114 HSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-GKDYPEVLKN--VKF 190 (734)
Q Consensus 114 ~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~-g~~~~~~~~~--~~~ 190 (734)
...|++.+..++..+.++... ..+..++|||||++|++..+ ..|+++|+++ ++........ ...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP-------ELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICN 87 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES-------SCCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred ceeEEEEeCCCCceeeeccCC-------cceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccc
Confidence 356777776666666555532 23678999999999999752 2799999999 8754332221 234
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
..+.|||||+.|++...+. ....+||.+++.++... .+ ... . ....+.|||||++|++....
T Consensus 88 ~~~~~spdg~~l~~~~~~~------------~~~~~l~~~~~~~~~~~--~~-~~~--~-~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVE------------FGKSAIYLLPSTGGTPR--LM-TKN--L-PSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp SCCEECTTSSEEEEEECTT------------TSSCEEEEEETTCCCCE--EC-CSS--S-SEEEEEECTTSSEEEEEEEE
T ss_pred cceEECCCCCEEEEEEeCC------------CCcceEEEEECCCCceE--Ee-ecC--C-CccceEECCCCCEEEEEECC
Confidence 6799999999999987432 13458999988765421 22 111 1 24568999999999987654
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE 349 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 349 (734)
.. ...||.+++.++. ...+......... .|+|||+.|++.+..++ ..+|+.+++.++. ...+...
T Consensus 150 ~~-~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~~i~~~~~~~~~---~~~~~~~ 215 (297)
T 2ojh_A 150 DQ-VFDIYSMDIDSGV---------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG-QMQIWRVRVDGSS---VERITDS 215 (297)
T ss_dssp TT-EEEEEEEETTTCC---------EEECCCSSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSSC---EEECCCC
T ss_pred CC-ceEEEEEECCCCc---------ceEcccCCCccccceECCCCCEEEEEecCCC-CccEEEECCCCCC---cEEEecC
Confidence 32 2578888887621 2223322222233 39999999998876543 5679988876654 3444333
Q ss_pred CCCceeEEEEEe-eCCEEEEEEEeC--------CceeEEEEECCCCceeeeeC--CCCceEEeeccCcccceEEEEEec
Q psy4818 350 DENRTLDVVAAV-ANNKLIVHYIQN--------VRSVMDLHDLNTGKRLHSFP--LDLGQITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 350 ~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~l~~~dl~~g~~~~~l~--~~~g~v~~~~~~~d~~~l~~~~ss 417 (734)
. ..+..+.+. +++.+++..... ....|++||+.+++...... ...+.+..+.++|+++.+++....
T Consensus 216 ~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 216 A--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp S--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred C--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 2 334444454 445566655543 23679999997776532222 224456678889999888776554
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=166.92 Aligned_cols=208 Identities=14% Similarity=0.142 Sum_probs=135.0
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc--------------
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE-------------- 534 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~-------------- 534 (734)
...+|.....|.. .+++.|+||++||+.+.... |. .++..|+++||+|+++|+||++....
T Consensus 81 ~~~~p~~~~~P~~--~~~~~P~Vv~~HG~~~~~~~--~~-~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~ 155 (383)
T 3d59_A 81 SMTTPANWNSPLR--PGEKYPLVVFSHGLGAFRTL--YS-AIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDK 155 (383)
T ss_dssp TCEESSEETCCBC--CSSCEEEEEEECCTTCCTTT--TH-HHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCC
T ss_pred ceeeccccCCCcc--cCCCCCEEEEcCCCCCCchH--HH-HHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCc
Confidence 3455555544432 24578999999998665432 33 35567778899999999999764321
Q ss_pred hhhhc----cccc------cCCCchhHHHHHHHHHHH--------------------cCCCCCCcEEEEEcChHHHHHHH
Q psy4818 535 DWHNA----GRLL------KKQNCFDDFQAAAEYMIN--------------------KKYTKPKYITIMGGSNGGLLVGA 584 (734)
Q Consensus 535 ~~~~~----~~~~------~~~~~~~D~~~~~~~l~~--------------------~~~~d~~ri~i~G~S~GG~~~~~ 584 (734)
.|... +... .-....+|+..++++|.+ .+.+|++||+++|||+||++++.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~ 235 (383)
T 3d59_A 156 SWLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQ 235 (383)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHH
T ss_pred eeeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHH
Confidence 11100 0000 001124688889999876 45678899999999999999999
Q ss_pred HHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCC
Q psy4818 585 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDR 664 (734)
Q Consensus 585 ~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~ 664 (734)
++.+.| .++++|+..|... |...+ .+.+ ++.| +|++||++|..
T Consensus 236 ~a~~~~-~v~a~v~~~~~~~-------------------p~~~~---------~~~~-------i~~P-~Lii~g~~D~~ 278 (383)
T 3d59_A 236 TLSEDQ-RFRCGIALDAWMF-------------------PLGDE---------VYSR-------IPQP-LFFINSEYFQY 278 (383)
T ss_dssp HHHHCT-TCCEEEEESCCCT-------------------TCCGG---------GGGS-------CCSC-EEEEEETTTCC
T ss_pred HHhhCC-CccEEEEeCCccC-------------------CCchh---------hhcc-------CCCC-EEEEecccccc
Confidence 988766 5899998887431 11111 1122 4455 99999999974
Q ss_pred CCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC--------------------chHHhHHHH-HHHHHHHHH
Q psy4818 665 VPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT--------------------PLMKSIEEM-TDIYVFLMK 723 (734)
Q Consensus 665 v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~--------------------~~~~~~~~~-~~~~~fl~~ 723 (734)
+ +..+..++|.+. +.+.+++++++++|.+.. ......+.+ +.+++||.+
T Consensus 279 ~---~~~~~~~~l~~~-------~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~ 348 (383)
T 3d59_A 279 P---ANIIKMKKCYSP-------DKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQK 348 (383)
T ss_dssp H---HHHHHHHTTCCT-------TSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred h---hhHHHHHHHHhc-------CCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHH
Confidence 3 222333444444 778999999999998621 122122333 458999999
Q ss_pred HcCCC
Q psy4818 724 SLGLK 728 (734)
Q Consensus 724 ~l~~~ 728 (734)
+|+..
T Consensus 349 ~L~~~ 353 (383)
T 3d59_A 349 HLGLH 353 (383)
T ss_dssp HHTCC
T ss_pred HcCCc
Confidence 99754
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-17 Score=157.76 Aligned_cols=192 Identities=14% Similarity=0.007 Sum_probs=128.4
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHH-HHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSIS-RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
.+|.++.+..+.|++ +++.|+||++||+.+... .|... +...|+++||.|+++|+||.|... ..... ..-
T Consensus 14 ~~g~~l~~~~~~p~~---~~~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~---~~~~~-~~~ 84 (210)
T 1imj_A 14 VQGQALFFREALPGS---GQARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLGHSK---EAAAP-API 84 (210)
T ss_dssp ETTEEECEEEEECSS---SCCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSGGGT---TSCCS-SCT
T ss_pred eCCeEEEEEEeCCCC---CCCCceEEEECCCCCccc--eeecchhHHHHHHCCCeEEEecCCCCCCCC---CCCCc-chh
Confidence 388899999998864 356899999999865543 23332 356677789999999999954322 11100 011
Q ss_pred CCch--hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCC
Q psy4818 546 QNCF--DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGS 623 (734)
Q Consensus 546 ~~~~--~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~ 623 (734)
.... +|+.+.++.+ +.++++++|+|+||.+++.++.++|+.++++|+.+|..... +
T Consensus 85 ~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~----------~------ 142 (210)
T 1imj_A 85 GELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK----------I------ 142 (210)
T ss_dssp TSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG----------S------
T ss_pred hhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc----------c------
Confidence 1111 4555555554 34689999999999999999999999999999998875321 0
Q ss_pred CCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC
Q psy4818 624 PNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 624 ~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~ 703 (734)
... .+ .. ++.| +|+++|++|. ++++.+.++ + . -...++.+++++||.+
T Consensus 143 --~~~---~~------~~-------~~~p-~l~i~g~~D~-~~~~~~~~~-~----~-------~~~~~~~~~~~~~H~~ 190 (210)
T 1imj_A 143 --NAA---NY------AS-------VKTP-ALIVYGDQDP-MGQTSFEHL-K----Q-------LPNHRVLIMKGAGHPC 190 (210)
T ss_dssp --CHH---HH------HT-------CCSC-EEEEEETTCH-HHHHHHHHH-T----T-------SSSEEEEEETTCCTTH
T ss_pred --cch---hh------hh-------CCCC-EEEEEcCccc-CCHHHHHHH-h----h-------CCCCCEEEecCCCcch
Confidence 111 11 11 4455 9999999999 887666544 3 2 2346889999999986
Q ss_pred CCchHHhHHHHHHHHHHHHH
Q psy4818 704 GTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 704 ~~~~~~~~~~~~~~~~fl~~ 723 (734)
..... .+..+.+.+||.+
T Consensus 191 ~~~~~--~~~~~~i~~fl~~ 208 (210)
T 1imj_A 191 YLDKP--EEWHTGLLDFLQG 208 (210)
T ss_dssp HHHCH--HHHHHHHHHHHHT
T ss_pred hhcCH--HHHHHHHHHHHHh
Confidence 42221 3445667777764
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=167.50 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=145.4
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeE----EEEEecccCCCC
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGI----YAIPNIRGGGEL 532 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~----v~~~~~rG~~~~ 532 (734)
..+.+.+.|. .|..+.+++|.|+++. .+++|+|+++||+...... .+. ..+..|.++|++ |+.+|++|++..
T Consensus 167 ~v~~~~~~S~~~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~~-~~~-~~~~~l~~~g~~~p~iVV~~d~~~~~~r 243 (403)
T 3c8d_A 167 PAKEIIWKSERLKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVW-PVLTSLTHRQQLPPAVYVLIDAIDTTHR 243 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCH-HHHHHHHHTTSSCSCEEEEECCCSHHHH
T ss_pred ceEEEEEEccccCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhcC-cHH-HHHHHHHHcCCCCCeEEEEECCCCCccc
Confidence 4567777775 6778999999998753 5689999999996322111 122 234555556875 999999863211
Q ss_pred CchhhhccccccCCCchhHHH--HHHHHHHHcC--CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQ--AAAEYMINKK--YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~--~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
...+ .....+.+++ .++.++.++. ..|+++++|+|+|+||++++.++.++|++|+++++.+|.+++...
T Consensus 244 ~~~~-------~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~ 316 (403)
T 3c8d_A 244 AHEL-------PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 316 (403)
T ss_dssp HHHS-------SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCT
T ss_pred cccC-------CChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCC
Confidence 1110 0122344543 3566766542 358899999999999999999999999999999999998754321
Q ss_pred cccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCC
Q psy4818 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK 688 (734)
Q Consensus 609 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~ 688 (734)
. .+......+.+.. .+ ... .. ++++|.+|+.|..+ +.++.+++++|+++ |
T Consensus 317 ~-------------~~~~~~~~~~~~~-~~---~~~----~~-~~i~l~~G~~D~~~-~~~~~~l~~~L~~~-------G 366 (403)
T 3c8d_A 317 G-------------GQQEGVLLEKLKA-GE---VSA----EG-LRIVLEAGIREPMI-MRANQALYAQLHPI-------K 366 (403)
T ss_dssp T-------------SSSCCHHHHHHHT-TS---SCC----CS-CEEEEEEESSCHHH-HHHHHHHHHHTGGG-------T
T ss_pred C-------------CCcHHHHHHHHHh-cc---ccC----CC-ceEEEEeeCCCchh-HHHHHHHHHHHHhC-------C
Confidence 0 1111112222222 11 111 23 34999999998754 67899999999998 9
Q ss_pred CcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 689 NPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 689 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
.++++.++++ ||.+. ...+...+.+.||.+.+
T Consensus 367 ~~v~~~~~~G-gH~~~----~w~~~l~~~l~~l~~~~ 398 (403)
T 3c8d_A 367 ESIFWRQVDG-GHDAL----CWRGGLMQGLIDLWQPL 398 (403)
T ss_dssp TSEEEEEESC-CSCHH----HHHHHHHHHHHHHHGGG
T ss_pred CCEEEEEeCC-CCCHH----HHHHHHHHHHHHHhccc
Confidence 9999999999 69752 12345566788887654
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=162.68 Aligned_cols=251 Identities=10% Similarity=-0.014 Sum_probs=155.4
Q ss_pred CCceEEEEEEEcCC--CcE--EeEEEEEeccccCCCCCcEEEEecCCCCCc--CCcc----------------ccHH-HH
Q psy4818 455 TLFQTKQVYFRSKD--GTR--VPMYIIHRVGALRNRRNPVIIYGYGGYGVS--VLPT----------------FSIS-RC 511 (734)
Q Consensus 455 ~~~~~~~~~~~s~d--g~~--i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~--~~~~----------------~~~~-~~ 511 (734)
......++.|+|.| |.. +.+.++.|++. .++.|+|.|.||-.+.. -.|+ +... +.
T Consensus 71 ~~~~a~ri~Y~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~ 148 (462)
T 3guu_A 71 NNAASFQLQYRTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIII 148 (462)
T ss_dssp TTCEEEEEEEEEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHH
T ss_pred CCceEEEEEEEEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHH
Confidence 34478888888875 433 67899999874 23589999999965432 1111 1112 23
Q ss_pred HHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC--
Q psy4818 512 MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-- 589 (734)
Q Consensus 512 ~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-- 589 (734)
.++.++||+|+++||+|-| ..|..... ....+.|.+.++..+. +.....+++++|+|+||..+++++...
T Consensus 149 ~~~l~~G~~Vv~~Dy~G~G---~~y~~~~~---~~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~ 220 (462)
T 3guu_A 149 GWALQQGYYVVSSDHEGFK---AAFIAGYE---EGMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAES 220 (462)
T ss_dssp HHHHHTTCEEEEECTTTTT---TCTTCHHH---HHHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEecCCCCC---CcccCCcc---hhHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChh
Confidence 4414579999999999944 33332211 1122345555555443 332347999999999999999988754
Q ss_pred --CC-ceeEEEEcCCcchhccccccccCccc---------------------cccc------------------------
Q psy4818 590 --PE-LYGAALILVGALDMLRFNKFTIAYYS---------------------ESEF------------------------ 621 (734)
Q Consensus 590 --p~-~~~a~v~~~~~~d~~~~~~~~~~~~~---------------------~~~~------------------------ 621 (734)
|+ .++++++..+..|+........+..+ ..++
T Consensus 221 yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~ 300 (462)
T 3guu_A 221 YAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVL 300 (462)
T ss_dssp HCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHH
T ss_pred hcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHH
Confidence 45 47888888887665433210000000 0000
Q ss_pred ------------CC-C-CCHHHHHHHHhCCccC-CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCC
Q psy4818 622 ------------GS-P-NNKTHFHNLLSYSPLH-NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPY 686 (734)
Q Consensus 622 ------------g~-~-~~~~~~~~~~~~sp~~-~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~ 686 (734)
|. + .++...+.+.+.+.-. ....+....+.| +||+||.+|.+||+.++.++++++++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~P-vlI~hG~~D~vVP~~~s~~l~~~l~~~------ 373 (462)
T 3guu_A 301 TYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFP-RFIWHAIPDEIVPYQPAATYVKEQCAK------ 373 (462)
T ss_dssp HCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSE-EEEEEETTCSSSCHHHHHHHHHHHHHT------
T ss_pred hhccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCC-EEEEeCCCCCcCCHHHHHHHHHHHHHc------
Confidence 00 0 0111222233222200 000000014555 999999999999999999999999998
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 687 QKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 687 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
|.++++++|++++|+... .....++++||.++|...
T Consensus 374 -G~~V~~~~y~~~~H~~~~-----~~~~~d~l~WL~~r~~G~ 409 (462)
T 3guu_A 374 -GANINFSPYPIAEHLTAE-----IFGLVPSLWFIKQAFDGT 409 (462)
T ss_dssp -TCEEEEEEESSCCHHHHH-----HHTHHHHHHHHHHHHHTC
T ss_pred -CCCeEEEEECcCCccCch-----hhhHHHHHHHHHHHhCCC
Confidence 899999999999997642 234667899999999665
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-16 Score=160.13 Aligned_cols=202 Identities=14% Similarity=0.042 Sum_probs=137.2
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH------HHHHHHHhcCeEEEEEecccCCCCCchhhhcc----
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI------SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAG---- 540 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~------~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~---- 540 (734)
.+.+.++.|.+ .+.|.||++||+..... .|.. .++..|+++||.|+++|+||.|..+..-....
T Consensus 49 ~~~~~~~~p~~----~~~~~vvl~HG~g~~~~--~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~ 122 (328)
T 1qlw_A 49 QMYVRYQIPQR----AKRYPITLIHGCCLTGM--TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 122 (328)
T ss_dssp CEEEEEEEETT----CCSSCEEEECCTTCCGG--GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred eEEEEEEccCC----CCCccEEEEeCCCCCCC--ccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccc
Confidence 35566666764 23477999999864443 2331 24566667899999999999665442210000
Q ss_pred ------------------------cc-ccC---------CCchhH------------------HHHHHHHHHHcCCCCCC
Q psy4818 541 ------------------------RL-LKK---------QNCFDD------------------FQAAAEYMINKKYTKPK 568 (734)
Q Consensus 541 ------------------------~~-~~~---------~~~~~D------------------~~~~~~~l~~~~~~d~~ 568 (734)
.. .+. ...+++ +.+++..++++- +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~ 198 (328)
T 1qlw_A 123 GKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----D 198 (328)
T ss_dssp TSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----T
T ss_pred cccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----C
Confidence 00 000 000222 555666665542 2
Q ss_pred cEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCC
Q psy4818 569 YITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNN 648 (734)
Q Consensus 569 ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~ 648 (734)
++.++|||+||.+++.++.++|++++++|+..|..- ... ..... .
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~--------------------~~~------------~~~~~---~ 243 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC--------------------PKP------------EDVKP---L 243 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC--------------------CCG------------GGCGG---G
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC--------------------CCH------------HHHhh---c
Confidence 799999999999999999999999999999887530 000 00111 0
Q ss_pred ccCCcEEEEecCCCCCCCC-----hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCC-----CCCCCchHHhHHHHHHHH
Q psy4818 649 TQYPATLVLTGDHDDRVPP-----LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAG-----HGQGTPLMKSIEEMTDIY 718 (734)
Q Consensus 649 ~~~P~~Li~~g~~D~~v~~-----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~g-----H~~~~~~~~~~~~~~~~~ 718 (734)
.+.| +||++|++|..+++ .++.++++.+++. |..+++++++++| |.+....+ ..+....+.
T Consensus 244 ~~~P-vLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~-------g~~~~~~~~~~~gi~G~~H~~~~~~~-~~~~~~~i~ 314 (328)
T 1qlw_A 244 TSIP-VLVVFGDHIEEFPRWAPRLKACHAFIDALNAA-------GGKGQLMSLPALGVHGNSHMMMQDRN-NLQVADLIL 314 (328)
T ss_dssp TTSC-EEEEECSSCTTCTTTHHHHHHHHHHHHHHHHT-------TCCEEEEEGGGGTCCCCCTTGGGSTT-HHHHHHHHH
T ss_pred cCCC-EEEEeccCCccccchhhHHHHHHHHHHHHHHh-------CCCceEEEcCCCCcCCCcccchhccC-HHHHHHHHH
Confidence 3455 99999999999997 8899999999988 8889999999666 98765542 246777889
Q ss_pred HHHHHHcC
Q psy4818 719 VFLMKSLG 726 (734)
Q Consensus 719 ~fl~~~l~ 726 (734)
+||.+++.
T Consensus 315 ~fl~~~~~ 322 (328)
T 1qlw_A 315 DWIGRNTA 322 (328)
T ss_dssp HHHHHTCC
T ss_pred HHHHhccc
Confidence 99998875
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-15 Score=160.41 Aligned_cols=229 Identities=14% Similarity=0.033 Sum_probs=139.1
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
..+.+.+.||..|..... +..|+||++||+.+.... |.. +...|+++||.|+++|+||.|....
T Consensus 4 i~~~~~~~dG~~l~y~~~--------G~gp~VV~lHG~~~~~~~--~~~-l~~~La~~Gy~Vi~~D~rG~G~S~~----- 67 (456)
T 3vdx_A 4 ITVGQENSTSIDLYYEDH--------GTGVPVVLIHGFPLSGHS--WER-QSAALLDAGYRVITYDRRGFGQSSQ----- 67 (456)
T ss_dssp EEEEEETTEEEEEEEEEE--------SSSEEEEEECCTTCCGGG--GTT-HHHHHHHHTEEEEEECCTTSTTSCC-----
T ss_pred EeecccccCCeEEEEEEe--------CCCCEEEEECCCCCcHHH--HHH-HHHHHHHCCcEEEEECCCCCCCCCC-----
Confidence 345556677776653321 245899999998765543 443 3456656799999999999665431
Q ss_pred cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcchhccccccccCcc--
Q psy4818 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGALDMLRFNKFTIAYY-- 616 (734)
Q Consensus 540 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~d~~~~~~~~~~~~-- 616 (734)
......++++.+.+..+++. ++.++++++|+|+||++++.++.++ |+.++++|+.+|...............
T Consensus 68 ---~~~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~ 142 (456)
T 3vdx_A 68 ---PTTGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAP 142 (456)
T ss_dssp ---CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBC
T ss_pred ---CCCCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccch
Confidence 11234555655555555443 3456899999999999888888776 899999999998764322110000000
Q ss_pred -----------------c----ccc-cC------CCCCHHHHHHH----------------Hh--CCccCCCCCCCCCcc
Q psy4818 617 -----------------S----ESE-FG------SPNNKTHFHNL----------------LS--YSPLHNIKVPPNNTQ 650 (734)
Q Consensus 617 -----------------~----~~~-~g------~~~~~~~~~~~----------------~~--~sp~~~~~~p~~~~~ 650 (734)
+ ... +. .....+....+ .. .+....+.. ++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~----i~ 218 (456)
T 3vdx_A 143 QEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPR----ID 218 (456)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTT----CC
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhh----CC
Confidence 0 000 00 01111111110 00 111223333 67
Q ss_pred CCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 651 YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 651 ~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
.| +|+++|++|..||+.+..+.++++ ...+++++++++||.+..... .+....+.+||.+++.
T Consensus 219 ~P-vLiI~G~~D~~vp~~~~~~~l~~~----------~~~~~~~~i~gagH~~~~e~p--~~v~~~I~~FL~~~l~ 281 (456)
T 3vdx_A 219 VP-ALILHGTGDRTLPIENTARVFHKA----------LPSAEYVEVEGAPHGLLWTHA--EEVNTALLAFLAKALE 281 (456)
T ss_dssp SC-CEEEEETTCSSSCGGGTHHHHHHH----------CTTSEEEEETTCCSCTTTTTH--HHHHHHHHHHHHHHHH
T ss_pred CC-EEEEEeCCCCCcCHHHHHHHHHHH----------CCCceEEEeCCCCCcchhhCH--HHHHHHHHHHHHHhhc
Confidence 77 999999999999998443333332 223578899999998765433 4667778999998763
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=168.98 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=145.6
Q ss_pred EEcCCCcEEeEEEEEecc---ccCCCCCcEEEEecCCCCCcCCccccHHHHHHHH----hcCe---EEEEEecccCCCCC
Q psy4818 464 FRSKDGTRVPMYIIHRVG---ALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLR----HFNG---IYAIPNIRGGGELG 533 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~---~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~----~~G~---~v~~~~~rG~~~~g 533 (734)
+.+.||.+|.+..+.|.+ ..+.++.|+||++||..+.... |... ...|+ +.|| .|+++|+||. |
T Consensus 25 ~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~~--~~~~-~~~L~~~~~~~G~~~~~vi~~D~~G~---G 98 (398)
T 2y6u_A 25 LCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKVV--WEYY-LPRLVAADAEGNYAIDKVLLIDQVNH---G 98 (398)
T ss_dssp SSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGGG--GGGG-GGGSCCCBTTTTEEEEEEEEECCTTS---H
T ss_pred ccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHHH--HHHH-HHHHHHhhhhcCcceeEEEEEcCCCC---C
Confidence 456799999999998865 1223456899999998665543 3332 24454 3489 9999999994 4
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHc-C---CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc-
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINK-K---YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF- 608 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~- 608 (734)
..-............++++...+..+++. . .+++.++.++|+|+||.+++.++.++|++++++|+.+|.......
T Consensus 99 ~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 178 (398)
T 2y6u_A 99 DSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKAI 178 (398)
T ss_dssp HHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCCC
T ss_pred CCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccccccc
Confidence 33221100011233455554444443332 2 145556999999999999999999999999999999887654110
Q ss_pred ------cc---------------cccCcccc---------c--ccCCCCCHHHHHHHHhC--------------------
Q psy4818 609 ------NK---------------FTIAYYSE---------S--EFGSPNNKTHFHNLLSY-------------------- 636 (734)
Q Consensus 609 ------~~---------------~~~~~~~~---------~--~~g~~~~~~~~~~~~~~-------------------- 636 (734)
.. ......|. . .+.....++..+.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 2y6u_A 179 GAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKME 258 (398)
T ss_dssp SCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESSC
T ss_pred ccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecCC
Confidence 00 00000000 0 01111222222222210
Q ss_pred --------C--------ccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCC
Q psy4818 637 --------S--------PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAG 700 (734)
Q Consensus 637 --------s--------p~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~g 700 (734)
. ....+.. +++| +|+++|++|..||+..+.++++.+. .+++++++++|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vLii~G~~D~~~~~~~~~~l~~~~~-----------~~~~~~~~~~g 322 (398)
T 2y6u_A 259 QAQNLLCYMNMQTFAPFLISNVKF----VRKR-TIHIVGARSNWCPPQNQLFLQKTLQ-----------NYHLDVIPGGS 322 (398)
T ss_dssp HHHHHHTTSCGGGTHHHHHHHGGG----CCSE-EEEEEETTCCSSCHHHHHHHHHHCS-----------SEEEEEETTCC
T ss_pred chhhhhhhcccccchHHHHHhccc----cCCC-EEEEEcCCCCCCCHHHHHHHHHhCC-----------CceEEEeCCCC
Confidence 0 0011222 5666 9999999999999988776666543 35889999999
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 701 HGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 701 H~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
|...... ..+....+.+||.+++.
T Consensus 323 H~~~~e~--p~~~~~~i~~fl~~~~~ 346 (398)
T 2y6u_A 323 HLVNVEA--PDLVIERINHHIHEFVL 346 (398)
T ss_dssp TTHHHHS--HHHHHHHHHHHHHHHHH
T ss_pred ccchhcC--HHHHHHHHHHHHHHHHH
Confidence 9764332 24566678899988774
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=155.79 Aligned_cols=296 Identities=7% Similarity=-0.030 Sum_probs=177.8
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHI 172 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v 172 (734)
.+.++|+|.+++|....++. ..||+.+..+++...++.... .....+.|||||++|+|..... +|++
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~--~~l~~~d~~~~~~~~l~~~~~------~~~~~~~~spdg~~l~~~~~~~-----~l~~ 106 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKG------DNTFGGFISTDERAFFYVKNEL-----NLMK 106 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSS--CEEEEEETTTTEEEECCCSSC------BCTTTCEECTTSSEEEEEETTT-----EEEE
T ss_pred cCcCCCCCCEEEEEEecCCC--ceEEEEECCCCcEEEeecCCC------CccccceECCCCCEEEEEEcCC-----cEEE
Confidence 45667999999999876543 457888876666555544221 1112378999999999988543 6999
Q ss_pred EECCCCCcccccccccccCeeEEEcCCcEEEEEEEecC--------CCCCCCCcc------cccCCcEEEEEECCCCCCC
Q psy4818 173 KDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDI--------NGTADGTET------TAHMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 173 ~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~--------~~~~~~~~~------~~~~~~~l~~~~l~t~~~~ 238 (734)
+|+.+|+......... .|+|||+.|+|...+.. .-.+++... .......|+++++.++..
T Consensus 107 ~d~~~~~~~~~~~~~~-----~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~- 180 (396)
T 3c5m_A 107 VDLETLEEQVIYTVDE-----EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL- 180 (396)
T ss_dssp EETTTCCEEEEEECCT-----TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE-
T ss_pred EECCCCCcEEEEeccc-----ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE-
Confidence 9999987543322111 28888888877432100 000011100 002345899999987643
Q ss_pred CeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCC--CceEEEEeCCCCCCCcccCCCCceeeeccc-c-ceE-EEEEe
Q psy4818 239 DIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQ--GSDLHYFDLHSLPDGKISGKFPLKTVIPGM-D-HHH-EIIAN 312 (734)
Q Consensus 239 ~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~-~-~~~-~~~s~ 312 (734)
..+... ......+.||| ||++|++....... ..+||+++++++. +..+.... . ... ..|+|
T Consensus 181 -~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 181 -EVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---------VRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp -EEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---------CEESSCCCTTEEEEEEEECT
T ss_pred -EeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---------eeEeeccCCCccccceEECC
Confidence 233332 22456789999 89999987642211 1589999997732 22233211 1 111 24999
Q ss_pred cCCeEEEEeCCCCC-CceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEe--------------CCce
Q psy4818 313 NGPELIVKTTKNAP-KGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQ--------------NVRS 376 (734)
Q Consensus 313 dg~~l~~~s~~~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~--------------~~~~ 376 (734)
||+.|++.++..+. ...|+++|++++. .+.+.... ... ..... + +.+++.... ++..
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~-~~~--~~~s~~d-g~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMP-PCS--HLMSNFD-GSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECC-SEE--EEEECSS-SSEEEEEECCC----------CCCCCC
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCC-CCC--CCccCCC-CceEEEecCCcceeeccccccccCCCC
Confidence 99999988765432 2459999998765 34443322 222 22334 5 444444321 2446
Q ss_pred eEEEEECCCCceeeeeCCCCc-----------eEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLG-----------QITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g-----------~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|+++|+.+|+. +.++.... ....+.+++|++.+++..+. ..+..+|.+|+
T Consensus 321 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~~~~~l~~~~~ 382 (396)
T 3c5m_A 321 FLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-EGVPAIYIADV 382 (396)
T ss_dssp EEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEEC
T ss_pred cEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecC-CCCceEEEEEE
Confidence 899999977764 45543322 13346678899888776554 34567999998
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=150.61 Aligned_cols=221 Identities=20% Similarity=0.193 Sum_probs=128.4
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
+...||.+|..... +..|.||++||..+... .|... ...|.++||.|+++|+||.|.....
T Consensus 3 ~~~~~g~~l~y~~~--------G~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~-------- 63 (271)
T 3ia2_A 3 FVAKDGTQIYFKDW--------GSGKPVLFSHGWLLDAD--MWEYQ-MEYLSSRGYRTIAFDRRGFGRSDQP-------- 63 (271)
T ss_dssp EECTTSCEEEEEEE--------SSSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTSCCC--------
T ss_pred EEcCCCCEEEEEcc--------CCCCeEEEECCCCCcHH--HHHHH-HHHHHhCCceEEEecCCCCccCCCC--------
Confidence 56778988765432 22356889999866554 34433 4556667999999999996654321
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc-CCCceeEEEEcCCcchhcccccc---ccCc----
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ-RPELYGAALILVGALDMLRFNKF---TIAY---- 615 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~-~p~~~~a~v~~~~~~d~~~~~~~---~~~~---- 615 (734)
.....++++.+.+..+++. .+.+++.++|||+||++++.++++ .|++++++|+..+.......... ....
T Consensus 64 ~~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (271)
T 3ia2_A 64 WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFA 141 (271)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHHH
Confidence 1223455555555554443 244689999999999877666554 48999999987754321110000 0000
Q ss_pred -----------cccc----c-c----CCCCCHHH----------------HH---HHHhCCccCCCCCCCCCccCCcEEE
Q psy4818 616 -----------YSES----E-F----GSPNNKTH----------------FH---NLLSYSPLHNIKVPPNNTQYPATLV 656 (734)
Q Consensus 616 -----------~~~~----~-~----g~~~~~~~----------------~~---~~~~~sp~~~~~~p~~~~~~P~~Li 656 (734)
.+.. . + +....... +. .+...+....+.. +++| +||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~Lv 216 (271)
T 3ia2_A 142 RFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAK----IDVP-TLV 216 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTT----CCSC-EEE
T ss_pred HHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccC----CCCC-EEE
Confidence 0000 0 0 00001100 00 0111111111222 6777 999
Q ss_pred EecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 657 ~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
++|++|..||+.++.++.+++. ...++.+++++||.+..... .+..+.+.+||.
T Consensus 217 i~G~~D~~~p~~~~~~~~~~~~----------~~~~~~~~~~~gH~~~~e~p--~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 217 IHGDGDQIVPFETTGKVAAELI----------KGAELKVYKDAPHGFAVTHA--QQLNEDLLAFLK 270 (271)
T ss_dssp EEETTCSSSCGGGTHHHHHHHS----------TTCEEEEETTCCTTHHHHTH--HHHHHHHHHHHT
T ss_pred EEeCCCCcCChHHHHHHHHHhC----------CCceEEEEcCCCCcccccCH--HHHHHHHHHHhh
Confidence 9999999999988666655442 23478999999998753322 356666778874
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=144.67 Aligned_cols=183 Identities=15% Similarity=0.021 Sum_probs=122.1
Q ss_pred CCcEEEEecCCCCCcC-CccccHHHHHHHHhc-CeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 487 RNPVIIYGYGGYGVSV-LPTFSISRCMFLRHF-NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~-G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
+.|+||++||+.+... ...|...+...|+++ ||.|+++|+||.+. .++...++.+++.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 4689999999876642 233444355677766 99999999998321 123344455554422
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCC
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 644 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~ 644 (734)
. .+++.++|+|+||++++.++.++| ++++|+.+|............ ..| +..+... +.+. .
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~-~~~---~~~~~~~---~~~~---------~ 125 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDENERA-SGY---FTRPWQW---EKIK---------A 125 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHHHHH-TST---TSSCCCH---HHHH---------H
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhhhHH-Hhh---hcccccH---HHHH---------h
Confidence 2 378999999999999999999999 799999888764221100000 001 1112211 1111 1
Q ss_pred CCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 645 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 645 p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
.. +|+|+++|++|..||+.++.++++.+ .. ++.+++++||.+.... -+...++++||.+.
T Consensus 126 ----~~-~p~lii~G~~D~~vp~~~~~~~~~~~-~~-----------~~~~~~~~gH~~~~~~---p~~~~~~~~fl~~~ 185 (194)
T 2qs9_A 126 ----NC-PYIVQFGSTDDPFLPWKEQQEVADRL-ET-----------KLHKFTDCGHFQNTEF---HELITVVKSLLKVP 185 (194)
T ss_dssp ----HC-SEEEEEEETTCSSSCHHHHHHHHHHH-TC-----------EEEEESSCTTSCSSCC---HHHHHHHHHHHTCC
T ss_pred ----hC-CCEEEEEeCCCCcCCHHHHHHHHHhc-CC-----------eEEEeCCCCCccchhC---HHHHHHHHHHHHhh
Confidence 22 24999999999999999999888887 43 6889999999986543 35566778999876
Q ss_pred cC
Q psy4818 725 LG 726 (734)
Q Consensus 725 l~ 726 (734)
..
T Consensus 186 ~~ 187 (194)
T 2qs9_A 186 AL 187 (194)
T ss_dssp CC
T ss_pred hh
Confidence 54
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-15 Score=156.71 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=136.7
Q ss_pred CCcEEEEecCCCCCcCCc-----------cccHHHH--HHHHhcCeEEEEEeccc--CCCCCchhhhcc--c---cccCC
Q psy4818 487 RNPVIIYGYGGYGVSVLP-----------TFSISRC--MFLRHFNGIYAIPNIRG--GGELGEDWHNAG--R---LLKKQ 546 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~-----------~~~~~~~--~~l~~~G~~v~~~~~rG--~~~~g~~~~~~~--~---~~~~~ 546 (734)
+.|+||++||..+..... .|..... ..|.+.||.|+++|+|| .|..+..-.... . .....
T Consensus 45 ~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s~~~~~~~~~~~~~~~~~~~ 124 (366)
T 2pl5_A 45 KNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPF 124 (366)
T ss_dssp SCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCC
T ss_pred CCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCCCCCCCCCCCCccccCCCCc
Confidence 368999999987665421 2332211 12334699999999999 454432100000 0 00113
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcE-EEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc------------c---
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYI-TIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN------------K--- 610 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~------------~--- 610 (734)
..++++.+.+..+++. +..+++ .|+|||+||.+++.++.++|++++++|+.+|........ .
T Consensus 125 ~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T 2pl5_A 125 VSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPN 202 (366)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTT
T ss_pred ccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCccCCCccchhhHHHHHHHHhCcc
Confidence 4678888877777765 345688 899999999999999999999999999988865421100 0
Q ss_pred -----c------------------c-cC-cccccccC---------------------------CCCCHHH----HHHHH
Q psy4818 611 -----F------------------T-IA-YYSESEFG---------------------------SPNNKTH----FHNLL 634 (734)
Q Consensus 611 -----~------------------~-~~-~~~~~~~g---------------------------~~~~~~~----~~~~~ 634 (734)
+ . .. ..+...+. ....... +..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 2pl5_A 203 WKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALD 282 (366)
T ss_dssp CGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHH
T ss_pred cccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHHHHhhhcccChhHHHHHHhhhh
Confidence 0 0 00 00000000 0001111 11222
Q ss_pred hCCccC------CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEe-CCCCCCCCCch
Q psy4818 635 SYSPLH------NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVE-QDAGHGQGTPL 707 (734)
Q Consensus 635 ~~sp~~------~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~-~~~gH~~~~~~ 707 (734)
.+.... .+.. +++| +||++|++|..||+..+.++++.+... +..++++++ +++||......
T Consensus 283 ~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~gH~~~~e~ 350 (366)
T 2pl5_A 283 HYSLGKGKELTAALSN----ATCR-FLVVSYSSDWLYPPAQSREIVKSLEAA-------DKRVFYVELQSGEGHDSFLLK 350 (366)
T ss_dssp HCBCCSHHHHHHHHTT----CCSE-EEEEEETTCCSSCHHHHHHHHHHHHHT-------TCCEEEEEECCCBSSGGGGSC
T ss_pred hhccccccchhhhhcc----CCCC-EEEEecCCCcccCHHHHHHHHHHhhhc-------ccCeEEEEeCCCCCcchhhcC
Confidence 222111 2232 6677 999999999999999999999999876 556789999 89999875433
Q ss_pred HHhHHHHHHHHHHHHH
Q psy4818 708 MKSIEEMTDIYVFLMK 723 (734)
Q Consensus 708 ~~~~~~~~~~~~fl~~ 723 (734)
. .+....+.+||.+
T Consensus 351 p--~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 351 N--PKQIEILKGFLEN 364 (366)
T ss_dssp C--HHHHHHHHHHHHC
T ss_pred h--hHHHHHHHHHHcc
Confidence 3 3566667888864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-13 Score=143.89 Aligned_cols=322 Identities=13% Similarity=0.100 Sum_probs=191.9
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
.++|.++|...... ..+++.+..++.....+... ..+..++|||||++|+++.... ..|++||+.
T Consensus 40 s~dg~~l~~~~~~d----~~i~v~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~~~----~~v~v~d~~ 104 (391)
T 1l0q_A 40 SPDGTKVYVANAHS----NDVSIIDTATNNVIATVPAG-------SSPQGVAVSPDGKQVYVTNMAS----STLSVIDTT 104 (391)
T ss_dssp CTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEETTT----TEEEEEETT
T ss_pred CCCCCEEEEECCCC----CeEEEEECCCCeEEEEEECC-------CCccceEECCCCCEEEEEECCC----CEEEEEECC
Confidence 35677776654322 23555554444433333322 1477899999999998876433 369999999
Q ss_pred CCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEE
Q psy4818 177 TGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256 (734)
Q Consensus 177 ~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 256 (734)
+++.+...........++|+|||+.|+++... ...|+++++.++.. +..+... . ....+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---------------~~~v~~~d~~~~~~--~~~~~~~--~-~~~~~~ 164 (391)
T 1l0q_A 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG---------------DKTVSVINTVTKAV--INTVSVG--R-SPKGIA 164 (391)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETT---------------TTEEEEEETTTTEE--EEEEECC--S-SEEEEE
T ss_pred CCeEEEEEeCCCCcceEEECCCCCEEEEEeCC---------------CCEEEEEECCCCcE--EEEEecC--C-CcceEE
Confidence 99865433333344689999999999887632 23799999887642 2222222 1 236789
Q ss_pred EecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 257 VTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 257 ~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
|+|||++|++.... ...|++||+.++. ....+........ .|+|+|+.+++.+.. ..+..|+.+|+
T Consensus 165 ~~~dg~~l~~~~~~---~~~v~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~v~~~d~ 231 (391)
T 1l0q_A 165 VTPDGTKVYVANFD---SMSISVIDTVTNS---------VIDTVKVEAAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDT 231 (391)
T ss_dssp ECTTSSEEEEEETT---TTEEEEEETTTTE---------EEEEEECSSEEEEEEECTTSSEEEEEEEC-SSCCEEEEEET
T ss_pred ECCCCCEEEEEeCC---CCEEEEEECCCCe---------EEEEEecCCCccceEECCCCCEEEEEecC-cCCCcEEEEEC
Confidence 99999999765432 2679999998731 1222222222222 389999988877642 23467999999
Q ss_pred CCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCce------E---------
Q psy4818 336 NNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQ------I--------- 399 (734)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~------v--------- 399 (734)
.++. ....++.. .. +..+.+. +++.+++....+ ..|++||+.+++.+..+...... +
T Consensus 232 ~~~~---~~~~~~~~-~~-~~~~~~s~dg~~l~~s~~~d--~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T 1l0q_A 232 GTNK---ITARIPVG-PD-PAGIAVTPDGKKVYVALSFX--NTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY 304 (391)
T ss_dssp TTTE---EEEEEECC-SS-EEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred CCCe---EEEEEecC-CC-ccEEEEccCCCEEEEEcCCC--CEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence 8764 23344433 22 3444444 334566665444 57999999888876666432111 1
Q ss_pred --EeeccCcccceEE----EEEecCCCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCC--cE
Q psy4818 400 --THISGRRKYNEVF----YGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDG--TR 471 (734)
Q Consensus 400 --~~~~~~~d~~~l~----~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~ 471 (734)
..++.+....... +.+.+.......+.+|+ .++ ....... ....|.+.+.-...+++++.+| .+
T Consensus 305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-----~~g--~~~~~~~-~~~~~~~~g~y~~~~~~~~~~g~~~~ 376 (391)
T 1l0q_A 305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF-----GDG--SSSKKQN-PTHTYSETGIYTVRLTVSNSNGTDSQ 376 (391)
T ss_dssp CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC-----SSS--CEECSSS-CEECCSSCEEEEEEEEEEETTEEEEE
T ss_pred cccccccccccccccccceEEEEeCCCCceEEEEEC-----CCC--cccCcCC-CeEEeCCCceEEEEEEEECCCCcEEE
Confidence 0111111111100 22334445667889998 455 2221111 1124666666677888888999 57
Q ss_pred EeEEEEEecc
Q psy4818 472 VPMYIIHRVG 481 (734)
Q Consensus 472 i~~~~~~p~~ 481 (734)
++...+++++
T Consensus 377 ~~~~~v~~~~ 386 (391)
T 1l0q_A 377 ISTVNVVLKG 386 (391)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEEcCC
Confidence 8888888764
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-14 Score=143.18 Aligned_cols=223 Identities=15% Similarity=0.086 Sum_probs=130.4
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
+++.||.++..... +..|.||++||..+... .|... ...|.++||.|+++|+||.|.....
T Consensus 3 ~~~~~g~~l~y~~~--------g~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~-------- 63 (274)
T 1a8q_A 3 CTTRDGVEIFYKDW--------GQGRPVVFIHGWPLNGD--AWQDQ-LKAVVDAGYRGIAHDRRGHGHSTPV-------- 63 (274)
T ss_dssp EECTTSCEEEEEEE--------CSSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEccCCCEEEEEec--------CCCceEEEECCCcchHH--HHHHH-HHHHHhCCCeEEEEcCCCCCCCCCC--------
Confidence 45678877754322 23467999999765543 34433 3556667999999999996654311
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcchhcccc---ccccCc----
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGALDMLRFN---KFTIAY---- 615 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~d~~~~~---~~~~~~---- 615 (734)
.....++++.+.+..+++. ++.+++.++|||+||.+++.++.++ |++++++|+..+........ ......
T Consensus 64 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (274)
T 1a8q_A 64 WDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFD 141 (274)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHHH
Confidence 1224556666555555554 3446799999999999998877665 99999999887642110000 000000
Q ss_pred -----------ccc-----cccCC-----CCCHHHHHH-------------------HHhCCccCCCCCCCCCccCCcEE
Q psy4818 616 -----------YSE-----SEFGS-----PNNKTHFHN-------------------LLSYSPLHNIKVPPNNTQYPATL 655 (734)
Q Consensus 616 -----------~~~-----~~~g~-----~~~~~~~~~-------------------~~~~sp~~~~~~p~~~~~~P~~L 655 (734)
.+. ..++. ....+.... +........+.. +++| +|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~l 216 (274)
T 1a8q_A 142 ALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKK----FDIP-TL 216 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTT----CCSC-EE
T ss_pred HHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhc----CCCC-EE
Confidence 000 00110 011111111 111111112233 6777 99
Q ss_pred EEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 656 VLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 656 i~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+++|++|..+|+.+..+..+++ -...++++++++||.......+..+..+.+.+||.
T Consensus 217 ii~G~~D~~~~~~~~~~~~~~~----------~~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 217 VVHGDDDQVVPIDATGRKSAQI----------IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH----------STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred EEecCcCCCCCcHHHHHHHHhh----------CCCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 9999999999988655444332 12357889999999886541122456667788874
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=157.60 Aligned_cols=214 Identities=12% Similarity=0.037 Sum_probs=133.6
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|..+..... ++.|+||++||+.+... .|. .+...|++ ||.|+++|+||.|... ......
T Consensus 56 ~~~~~~~~~~--------g~~p~vv~lhG~~~~~~--~~~-~~~~~L~~-~~~v~~~D~~G~G~S~--------~~~~~~ 115 (314)
T 3kxp_A 56 GRITLNVREK--------GSGPLMLFFHGITSNSA--VFE-PLMIRLSD-RFTTIAVDQRGHGLSD--------KPETGY 115 (314)
T ss_dssp SSCEEEEEEE--------CCSSEEEEECCTTCCGG--GGH-HHHHTTTT-TSEEEEECCTTSTTSC--------CCSSCC
T ss_pred CCEEEEEEec--------CCCCEEEEECCCCCCHH--HHH-HHHHHHHc-CCeEEEEeCCCcCCCC--------CCCCCC
Confidence 6666655432 23689999999865543 343 34566776 8999999999965432 122345
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc------cccCcc-----
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK------FTIAYY----- 616 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~------~~~~~~----- 616 (734)
.++++.+.+..+++. .+.++++++|+|+||++++.++.++|+.++++|+.+|...+..... ......
T Consensus 116 ~~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (314)
T 3kxp_A 116 EANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDI 193 (314)
T ss_dssp SHHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSH
T ss_pred CHHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCH
Confidence 677777777766655 2346899999999999999999999999999999887543221100 000000
Q ss_pred ------cccccCCCCCHHHHHHHHhC---------------------------CccCCCCCCCCCccCCcEEEEecCCCC
Q psy4818 617 ------SESEFGSPNNKTHFHNLLSY---------------------------SPLHNIKVPPNNTQYPATLVLTGDHDD 663 (734)
Q Consensus 617 ------~~~~~g~~~~~~~~~~~~~~---------------------------sp~~~~~~p~~~~~~P~~Li~~g~~D~ 663 (734)
+...+.. ...+....+... +....+.. +++| +|+++|++|.
T Consensus 194 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~Lii~G~~D~ 267 (314)
T 3kxp_A 194 KAVEAYLAGRYPN-IPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRD----VTKP-VLIVRGESSK 267 (314)
T ss_dssp HHHHHHHHHHSTT-SCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHH----CCSC-EEEEEETTCS
T ss_pred HHHHHHHHhhccc-CchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhc----CCCC-EEEEecCCCc
Confidence 0000000 011111110000 11112222 5677 9999999999
Q ss_pred CCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 664 RVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 664 ~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
.+++..+.++++.+.. +++++++++||.+..... .+....+.+||.
T Consensus 268 ~~~~~~~~~~~~~~~~-----------~~~~~~~g~gH~~~~e~~--~~~~~~i~~fl~ 313 (314)
T 3kxp_A 268 LVSAAALAKTSRLRPD-----------LPVVVVPGADHYVNEVSP--EITLKAITNFID 313 (314)
T ss_dssp SSCHHHHHHHHHHCTT-----------SCEEEETTCCSCHHHHCH--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCCC-----------ceEEEcCCCCCcchhhCH--HHHHHHHHHHHh
Confidence 9999888887776643 367889999998743222 355666778875
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=145.59 Aligned_cols=221 Identities=19% Similarity=0.178 Sum_probs=129.0
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
+++.||.++..... +..|.||++||..+... .|.. ....|+++||.|+++|+||.|.....
T Consensus 3 ~~~~~g~~l~y~~~--------g~~~~vvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~G~G~S~~~-------- 63 (273)
T 1a8s_A 3 FTTRDGTQIYYKDW--------GSGQPIVFSHGWPLNAD--SWES-QMIFLAAQGYRVIAHDRRGHGRSSQP-------- 63 (273)
T ss_dssp EECTTSCEEEEEEE--------SCSSEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EecCCCcEEEEEEc--------CCCCEEEEECCCCCcHH--HHhh-HHhhHhhCCcEEEEECCCCCCCCCCC--------
Confidence 56678877754322 23478999999865543 3444 34566667999999999996644311
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcchhcccc---ccccCc----
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGALDMLRFN---KFTIAY---- 615 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~d~~~~~---~~~~~~---- 615 (734)
....+++++.+.+..+++. .+.+++.++|||+||.+++.++.++ |++++++|+..+........ ......
T Consensus 64 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T 1a8s_A 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcHHHHH
Confidence 1234566666655555554 3456899999999999998876665 99999998877532110000 000000
Q ss_pred -----------ccc------cccCC-----CCCHHHHH----------------HH---HhCCccCCCCCCCCCccCCcE
Q psy4818 616 -----------YSE------SEFGS-----PNNKTHFH----------------NL---LSYSPLHNIKVPPNNTQYPAT 654 (734)
Q Consensus 616 -----------~~~------~~~g~-----~~~~~~~~----------------~~---~~~sp~~~~~~p~~~~~~P~~ 654 (734)
.+. ..++. ....+..+ .+ ........+.. +++| +
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~ 216 (273)
T 1a8s_A 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKK----IDVP-T 216 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHT----CCSC-E
T ss_pred HHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhc----CCCC-E
Confidence 000 00110 01111111 01 11111112222 6677 9
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 655 LVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 655 Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
||++|++|..+|+.+..+..+++. ...++++++++||...... ..+..+.+.+||.
T Consensus 217 lii~G~~D~~~~~~~~~~~~~~~~----------~~~~~~~~~~~gH~~~~e~--p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 217 LVVHGDADQVVPIEASGIASAALV----------KGSTLKIYSGAPHGLTDTH--KDQLNADLLAFIK 272 (273)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHHS----------TTCEEEEETTCCSCHHHHT--HHHHHHHHHHHHH
T ss_pred EEEECCCCccCChHHHHHHHHHhC----------CCcEEEEeCCCCCcchhhC--HHHHHHHHHHHHh
Confidence 999999999999986554443331 1347889999999874322 2355666788875
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-15 Score=140.98 Aligned_cols=183 Identities=14% Similarity=0.055 Sum_probs=121.3
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|+||++||..+.... .|...+...|+++||.|+++|+|.++. .+++++.+.+..+++.-
T Consensus 3 g~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~--- 63 (192)
T 1uxo_A 3 GTKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL--- 63 (192)
T ss_dssp -CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---
T ss_pred CCCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---
Confidence 35889999997665431 344444455766799999999993211 13566666666555442
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCC--ceeEEEEcCCcchhccccccccCccccccc-CCCCCHHHHHHHHhCCccCCCC
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPE--LYGAALILVGALDMLRFNKFTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIK 643 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~--~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~ 643 (734)
.+++.++|+|+||++++.++.++|+ .++++|+.+|+......... ...| ..+.+. ..+ .
T Consensus 64 ~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~---------~ 125 (192)
T 1uxo_A 64 HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQM------LDEFTQGSFDH---QKI---------I 125 (192)
T ss_dssp CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGG------GGGGTCSCCCH---HHH---------H
T ss_pred cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccchh------hhhhhhcCCCH---HHH---------H
Confidence 5789999999999999999999999 99999999987653321110 0111 112111 111 1
Q ss_pred CCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 644 VPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 644 ~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
. +..| +|+++|++|..||+.++.++++.+ .. ++++++++||.+..... +.+..+.+||.+
T Consensus 126 ~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~-~~-----------~~~~~~~~gH~~~~~~~---~~~~~~~~~l~~ 185 (192)
T 1uxo_A 126 E----SAKH-RAVIASKDDQIVPFSFSKDLAQQI-DA-----------ALYEVQHGGHFLEDEGF---TSLPIVYDVLTS 185 (192)
T ss_dssp H----HEEE-EEEEEETTCSSSCHHHHHHHHHHT-TC-----------EEEEETTCTTSCGGGTC---SCCHHHHHHHHH
T ss_pred h----hcCC-EEEEecCCCCcCCHHHHHHHHHhc-Cc-----------eEEEeCCCcCccccccc---ccHHHHHHHHHH
Confidence 1 3445 999999999999999888877766 33 68899999998854322 112235666666
Q ss_pred HcC
Q psy4818 724 SLG 726 (734)
Q Consensus 724 ~l~ 726 (734)
.|.
T Consensus 186 ~l~ 188 (192)
T 1uxo_A 186 YFS 188 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=149.00 Aligned_cols=211 Identities=14% Similarity=0.070 Sum_probs=133.7
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
+...||.++.....- +.|+||++||+.+.... |. .+...|+ +||.|+++|+||.|.....
T Consensus 7 ~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~~~~--~~-~~~~~l~-~~~~vi~~d~~G~G~S~~~-------- 66 (262)
T 3r0v_A 7 VPSSDGTPIAFERSG--------SGPPVVLVGGALSTRAG--GA-PLAERLA-PHFTVICYDRRGRGDSGDT-------- 66 (262)
T ss_dssp EECTTSCEEEEEEEE--------CSSEEEEECCTTCCGGG--GH-HHHHHHT-TTSEEEEECCTTSTTCCCC--------
T ss_pred EEcCCCcEEEEEEcC--------CCCcEEEECCCCcChHH--HH-HHHHHHh-cCcEEEEEecCCCcCCCCC--------
Confidence 556788887755432 25789999998665533 33 3456676 6999999999996644311
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC---------
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA--------- 614 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~--------- 614 (734)
...+++++.+.+..+++. .+ +++.++|+|+||.+++.++.++| .++++|+..|.............
T Consensus 67 -~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (262)
T 3r0v_A 67 -PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTRLDAL 141 (262)
T ss_dssp -SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHHHHHH
Confidence 134577777766666665 23 68999999999999999999999 99999998886543221100000
Q ss_pred ----------cccccc-cCCCCCHHHHHHHHhC------------------------CccCCCCCCCCCccCCcEEEEec
Q psy4818 615 ----------YYSESE-FGSPNNKTHFHNLLSY------------------------SPLHNIKVPPNNTQYPATLVLTG 659 (734)
Q Consensus 615 ----------~~~~~~-~g~~~~~~~~~~~~~~------------------------sp~~~~~~p~~~~~~P~~Li~~g 659 (734)
..+... .+.+ ++..+.+... .+...+.. +++| +|+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G 214 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGVP--PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFAS----ISIP-TLVMDG 214 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCCC--HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTT----CCSC-EEEEEC
T ss_pred hhccchhhHHHHHhhcccCCC--HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCc----CCCC-EEEEee
Confidence 000001 1111 1111111110 11122222 6677 999999
Q ss_pred CCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 660 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 660 ~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
++|..+++..+.++.+.+. .+++++++++||. .. ..+....+.+||.
T Consensus 215 ~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~-~~----p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 215 GASPAWIRHTAQELADTIP-----------NARYVTLENQTHT-VA----PDAIAPVLVEFFT 261 (262)
T ss_dssp TTCCHHHHHHHHHHHHHST-----------TEEEEECCCSSSS-CC----HHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHhCC-----------CCeEEEecCCCcc-cC----HHHHHHHHHHHHh
Confidence 9999999888777776553 2478999999993 22 2355666778874
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-15 Score=147.04 Aligned_cols=208 Identities=7% Similarity=-0.017 Sum_probs=129.4
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPK 568 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 568 (734)
|+||++||..+.... |.. ....|+++||.|+++|+||.|..... .....+++++.+.+..++++-.. .+
T Consensus 5 ~~vv~lHG~~~~~~~--~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~l~~-~~ 73 (258)
T 3dqz_A 5 HHFVLVHNAYHGAWI--WYK-LKPLLESAGHRVTAVELAASGIDPRP-------IQAVETVDEYSKPLIETLKSLPE-NE 73 (258)
T ss_dssp CEEEEECCTTCCGGG--GTT-HHHHHHHTTCEEEEECCTTSTTCSSC-------GGGCCSHHHHHHHHHHHHHTSCT-TC
T ss_pred CcEEEECCCCCcccc--HHH-HHHHHHhCCCEEEEecCCCCcCCCCC-------CCccccHHHhHHHHHHHHHHhcc-cC
Confidence 899999998765543 443 34667777999999999996643311 11224567777666666655322 26
Q ss_pred cEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc------c-cCccccc----------------------
Q psy4818 569 YITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF------T-IAYYSES---------------------- 619 (734)
Q Consensus 569 ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~------~-~~~~~~~---------------------- 619 (734)
++.++|||+||++++.++.++|++++++|+.+|.......... . ....|..
T Consensus 74 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3dqz_A 74 EVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKF 153 (258)
T ss_dssp CEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHH
T ss_pred ceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHH
Confidence 8999999999999999999999999999988875422111000 0 0000000
Q ss_pred ---ccCCCCCHHHHHHHHh-C-------------CccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 620 ---EFGSPNNKTHFHNLLS-Y-------------SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 620 ---~~g~~~~~~~~~~~~~-~-------------sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
.+......+....+.. . .+...... .++| +|+++|++|..+|+..+.++.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~-- 226 (258)
T 3dqz_A 154 MKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGY----GSVQ-RVYVMSSEDKAIPCDFIRWMIDNFNVS-- 226 (258)
T ss_dssp HHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTG----GGSC-EEEEEETTCSSSCHHHHHHHHHHSCCS--
T ss_pred HHHHhhccCCHHHHHHHHHhccCCchhhhhhhcccccccccc----ccCC-EEEEECCCCeeeCHHHHHHHHHhCCcc--
Confidence 0001111111111111 1 11111111 3466 999999999999998887777665322
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
++++++++||....... .+..+.+.+|+.++|
T Consensus 227 ---------~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 227 ---------KVYEIDGGDHMVMLSKP--QKLFDSLSAIATDYM 258 (258)
T ss_dssp ---------CEEEETTCCSCHHHHSH--HHHHHHHHHHHHHTC
T ss_pred ---------cEEEcCCCCCchhhcCh--HHHHHHHHHHHHHhC
Confidence 67889999998654322 356666888988764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-13 Score=163.07 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=73.8
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC-CCceEEEE
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS-GSDWNTLH 171 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~-g~~~~~l~ 171 (734)
...|...|++++|... ..||+.+..+++.+.|+... ..+..++|||||++|||+.... .....+||
T Consensus 17 ~~~~~~S~~~iaf~~~------~~l~~~~~~gg~~~~lt~~~-------~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 17 LLNPDIHGDRIIFVCC------DDLWEHDLKSGSTRKIVSNL-------GVINNARFFPDGRKIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CEEEEEETTEEEEEET------TEEEEEETTTCCEEEEECSS-------SEEEEEEECTTSSEEEEEEEESTTCCEEEEE
T ss_pred EeCcEEeCCEEEEEEC------CcEEEEECCCCcEEEeeeCC-------CcccCeEECCCCCEEEEEEeeccCCCCCeEE
Confidence 4445555889999875 25888887778877776532 3578999999999999998751 11337899
Q ss_pred EEECCCCCccccccccccc-------CeeEEEcCCcEEEEEEE
Q psy4818 172 IKDVDTGKDYPEVLKNVKF-------PSISWTHDHKGFFYNQY 207 (734)
Q Consensus 172 v~dl~~g~~~~~~~~~~~~-------~~~~wSpDg~~l~y~~~ 207 (734)
+||+++|+..+.+...... ..++|||||+ |+|+..
T Consensus 84 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~ 125 (1045)
T 1k32_A 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTD 125 (1045)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEEC
T ss_pred EEECCCCCeEEcccCCCcccccccccccccCCCCCE-EEEEEC
Confidence 9999999854444333333 5799999999 877765
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=150.92 Aligned_cols=209 Identities=10% Similarity=0.051 Sum_probs=129.1
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
...|+||++||..+.... |.. +...|.++||.|+++|+||.|..... ......++++.+.+..+++.- .
T Consensus 10 ~~~~~vvllHG~~~~~~~--~~~-~~~~l~~~g~~v~~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGAWC--WYK-IVALMRSSGHNVTALDLGASGINPKQ-------ALQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp CCCCEEEEECCTTCCGGG--GHH-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCeEEEECCCCCCcch--HHH-HHHHHHhcCCeEEEeccccCCCCCCc-------CCccCCHHHHHHHHHHHHHhc-C
Confidence 457899999998765543 443 44667767999999999996544321 111245677777666666552 1
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc------cc-ccCcccc--------------------
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN------KF-TIAYYSE-------------------- 618 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~------~~-~~~~~~~-------------------- 618 (734)
+.+++.|+|||+||.+++.++.++|++++++|+.++........ .. .....|.
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAG 158 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhh
Confidence 45789999999999999999999999999999887754211100 00 0000000
Q ss_pred -----cccCCCCCHHHHHHHH---------------hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHH
Q psy4818 619 -----SEFGSPNNKTHFHNLL---------------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678 (734)
Q Consensus 619 -----~~~g~~~~~~~~~~~~---------------~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~ 678 (734)
..+......+....+. ...++..... .+.| +|+++|++|..+++....++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~ 233 (267)
T 3sty_A 159 PKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRY----GSVK-RVFIVATENDALKKEFLKLMIEKNP 233 (267)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTG----GGSC-EEEEECCCSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccc----cCCC-EEEEEeCCCCccCHHHHHHHHHhCC
Confidence 0000111111111111 1112222211 2466 9999999999998888777766553
Q ss_pred hhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
. +++++++++||....... .+....+.+|+.+
T Consensus 234 ~-----------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 265 (267)
T 3sty_A 234 P-----------DEVKEIEGSDHVTMMSKP--QQLFTTLLSIANK 265 (267)
T ss_dssp C-----------SEEEECTTCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred C-----------ceEEEeCCCCccccccCh--HHHHHHHHHHHHh
Confidence 2 478999999998643322 3556667788875
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=152.48 Aligned_cols=209 Identities=15% Similarity=0.077 Sum_probs=132.3
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..|+||++||..+... .|... ...|++ +|.|+++|+||.|.... ......+++++.+.+..+++.-
T Consensus 13 ~~~~~vvllHG~~~~~~--~w~~~-~~~L~~-~~~vi~~Dl~G~G~S~~-------~~~~~~~~~~~a~dl~~~l~~l-- 79 (268)
T 3v48_A 13 ADAPVVVLISGLGGSGS--YWLPQ-LAVLEQ-EYQVVCYDQRGTGNNPD-------TLAEDYSIAQMAAELHQALVAA-- 79 (268)
T ss_dssp TTCCEEEEECCTTCCGG--GGHHH-HHHHHT-TSEEEECCCTTBTTBCC-------CCCTTCCHHHHHHHHHHHHHHT--
T ss_pred CCCCEEEEeCCCCccHH--HHHHH-HHHHhh-cCeEEEECCCCCCCCCC-------CccccCCHHHHHHHHHHHHHHc--
Confidence 35688999999766543 34443 456765 89999999999553321 1112346778777777776652
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc------------------------cccCccccccc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK------------------------FTIAYYSESEF 621 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~------------------------~~~~~~~~~~~ 621 (734)
..+++.++|||+||.+++.++.++|++++++|+..+......... ......|....
T Consensus 80 ~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (268)
T 3v48_A 80 GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAAR 159 (268)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTT
T ss_pred CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcc
Confidence 345799999999999999999999999999998876432110000 00000010000
Q ss_pred -------------CCCCCH---HHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCC
Q psy4818 622 -------------GSPNNK---THFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLP 685 (734)
Q Consensus 622 -------------g~~~~~---~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~ 685 (734)
..+... ..+..+...+....+.. +++| +||++|++|..+|+..+.++.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~----i~~P-~Lii~G~~D~~~p~~~~~~l~~~~p~------ 228 (268)
T 3v48_A 160 APRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADR----IRCP-VQIICASDDLLVPTACSSELHAALPD------ 228 (268)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGG----CCSC-EEEEEETTCSSSCTHHHHHHHHHCSS------
T ss_pred cccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhc----CCCC-eEEEEeCCCcccCHHHHHHHHHhCCc------
Confidence 000000 01111222222233333 7788 99999999999999988877776543
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 686 YQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 686 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
.++.+++++||....... .+..+.+.+||...+
T Consensus 229 -----~~~~~~~~~GH~~~~e~p--~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 229 -----SQKMVMPYGGHACNVTDP--ETFNALLLNGLASLL 261 (268)
T ss_dssp -----EEEEEESSCCTTHHHHCH--HHHHHHHHHHHHHHH
T ss_pred -----CeEEEeCCCCcchhhcCH--HHHHHHHHHHHHHhc
Confidence 478889999997643332 356667888988754
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=160.08 Aligned_cols=251 Identities=14% Similarity=0.118 Sum_probs=146.8
Q ss_pred EEEEEEcCCCcEEeEEEEEecc-ccCCCCCcEEEEecCCCCCcCC----------cc-ccHHH--HHHHHhcCeEEEEEe
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVG-ALRNRRNPVIIYGYGGYGVSVL----------PT-FSISR--CMFLRHFNGIYAIPN 525 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~-~~~~~~~P~vv~~hGg~~~~~~----------~~-~~~~~--~~~l~~~G~~v~~~~ 525 (734)
+.-.++..+|..+...|.+..- .....+.|+||++||..+.... .. |.... ...|..+||.|+++|
T Consensus 13 ~~~~~~~~~g~~l~~~i~y~~~g~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D 92 (377)
T 3i1i_A 13 ILKEYTFENGRTIPVQMGYETYGTLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTD 92 (377)
T ss_dssp EEEEEECTTSCEEEEEEEEEEESCCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEEC
T ss_pred eecceeecCCCEeeeeEEEEeecccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEec
Confidence 3445666788777334433221 1112346899999998776543 11 22111 123445699999999
Q ss_pred cccCCC--------CCchhhhc--cc---cccCCCchhHHHHHHHHHHHcCCCCCCcEE-EEEcChHHHHHHHHHhcCCC
Q psy4818 526 IRGGGE--------LGEDWHNA--GR---LLKKQNCFDDFQAAAEYMINKKYTKPKYIT-IMGGSNGGLLVGACLNQRPE 591 (734)
Q Consensus 526 ~rG~~~--------~g~~~~~~--~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~~~~~~~~~p~ 591 (734)
+||.|. .|..-... +. .......++|+.+.+..+++. ...+++. |+|||+||.+++.++.++|+
T Consensus 93 ~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~ 170 (377)
T 3i1i_A 93 NLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPH 170 (377)
T ss_dssp CTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTT
T ss_pred ccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChH
Confidence 997642 11110000 00 011244778888888887765 3445775 99999999999999999999
Q ss_pred ceeEEEE-cCCcchhcc--------------ccc-c------------------------ccC-cccccccCC-------
Q psy4818 592 LYGAALI-LVGALDMLR--------------FNK-F------------------------TIA-YYSESEFGS------- 623 (734)
Q Consensus 592 ~~~a~v~-~~~~~d~~~--------------~~~-~------------------------~~~-~~~~~~~g~------- 623 (734)
+++++|+ ..+...... ... . ... ..+...++.
T Consensus 171 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (377)
T 3i1i_A 171 MVERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEP 250 (377)
T ss_dssp TBSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGG
T ss_pred HHHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhccccc
Confidence 9999998 554332000 000 0 000 000000111
Q ss_pred -----------------------CCCHHHH----HHHHhCCc-------cCCCCCCCCCccCCcEEEEecCCCCCCCChH
Q psy4818 624 -----------------------PNNKTHF----HNLLSYSP-------LHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669 (734)
Q Consensus 624 -----------------------~~~~~~~----~~~~~~sp-------~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~ 669 (734)
......+ ..+..+.+ ...+.. +++| +||++|++|..+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vlii~G~~D~~~~~~~ 325 (377)
T 3i1i_A 251 YEKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSN----VEAN-VLMIPCKQDLLQPSRY 325 (377)
T ss_dssp GTCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHT----CCSE-EEEECBTTCSSSCTHH
T ss_pred cccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhh----CCCC-EEEEecCCccccCHHH
Confidence 0000000 00111111 011122 6677 9999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCcEEEEEeCC-CCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQD-AGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 670 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
+.++++.+++. +..++++++++ +||....... .+....+.+||.+++.
T Consensus 326 ~~~~~~~~~~~-------g~~~~~~~i~~~~gH~~~~e~p--~~~~~~i~~fl~~~~~ 374 (377)
T 3i1i_A 326 NYKMVDLLQKQ-------GKYAEVYEIESINGHMAGVFDI--HLFEKKVYEFLNRKVS 374 (377)
T ss_dssp HHHHHHHHHHT-------TCCEEECCBCCTTGGGHHHHCG--GGTHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhc-------CCCceEEEcCCCCCCcchhcCH--HHHHHHHHHHHHhhhh
Confidence 99999999876 66789999998 9997543222 3456668899987654
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=144.29 Aligned_cols=223 Identities=15% Similarity=0.129 Sum_probs=129.4
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
+++.||.++.....-|+ ..|.||++||..+... .|.. ....|+++||.|+++|+||.|.....
T Consensus 3 ~~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~-~~~~l~~~g~~vi~~D~~G~G~S~~~-------- 65 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPR------DGLPVVFHHGWPLSAD--DWDN-QMLFFLSHGYRVIAHDRRGHGRSDQP-------- 65 (275)
T ss_dssp EECTTSCEEEEEEESCT------TSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEccCCCEEEEEEcCCC------CCceEEEECCCCCchh--hHHH-HHHHHHHCCceEEEEcCCcCCCCCCC--------
Confidence 45678887765444221 3478999999765543 3444 34566667999999999996654311
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcchhcccc---ccccCc----
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGALDMLRFN---KFTIAY---- 615 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~d~~~~~---~~~~~~---- 615 (734)
.....++++.+.+..+++. ++.+++.++|||+||.+++.++.++ |++++++|+..+........ ......
T Consensus 66 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 143 (275)
T 1a88_A 66 STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFD 143 (275)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCCHHHHH
Confidence 1223455555555444443 2345799999999999998877665 99999999877542111000 000000
Q ss_pred -----------ccc------cccCC-----CCCHHHHHH----------------H---HhCCccCCCCCCCCCccCCcE
Q psy4818 616 -----------YSE------SEFGS-----PNNKTHFHN----------------L---LSYSPLHNIKVPPNNTQYPAT 654 (734)
Q Consensus 616 -----------~~~------~~~g~-----~~~~~~~~~----------------~---~~~sp~~~~~~p~~~~~~P~~ 654 (734)
.+. ..++. ....+..+. + ........+.. +++| +
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~ 218 (275)
T 1a88_A 144 EFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKR----IDVP-V 218 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHH----CCSC-E
T ss_pred HHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhccccccccc----CCCC-E
Confidence 000 00110 011111111 0 01111111222 6677 9
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 655 LVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 655 Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
||++|++|..+|+.+..++.+++ -..+++++++++||...... ..+..+.+.+||.
T Consensus 219 lii~G~~D~~~~~~~~~~~~~~~----------~~~~~~~~~~~~gH~~~~e~--p~~~~~~i~~fl~ 274 (275)
T 1a88_A 219 LVAHGTDDQVVPYADAAPKSAEL----------LANATLKSYEGLPHGMLSTH--PEVLNPDLLAFVK 274 (275)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH----------STTEEEEEETTCCTTHHHHC--HHHHHHHHHHHHH
T ss_pred EEEecCCCccCCcHHHHHHHHhh----------CCCcEEEEcCCCCccHHHhC--HHHHHHHHHHHhh
Confidence 99999999999988654443332 22468899999999864322 2355666788875
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=148.03 Aligned_cols=203 Identities=16% Similarity=0.109 Sum_probs=123.1
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPK 568 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 568 (734)
|.||++||..+... .|.. ....|+++||.|+++|+||.|..... ....+++++.+.+..+++. .+.+
T Consensus 24 ~pvvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~a~dl~~~l~~--l~~~ 90 (277)
T 1brt_A 24 QPVVLIHGFPLSGH--SWER-QSAALLDAGYRVITYDRRGFGQSSQP--------TTGYDYDTFAADLNTVLET--LDLQ 90 (277)
T ss_dssp SEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CeEEEECCCCCcHH--HHHH-HHHHHhhCCCEEEEeCCCCCCCCCCC--------CCCccHHHHHHHHHHHHHH--hCCC
Confidence 45899999876543 3443 34667667999999999996643311 1234555655555555443 2346
Q ss_pred cEEEEEcChHHHHHHHHHhcCCC-ceeEEEEcCCcchhccc-cccccC------------------cccc----cc-cC-
Q psy4818 569 YITIMGGSNGGLLVGACLNQRPE-LYGAALILVGALDMLRF-NKFTIA------------------YYSE----SE-FG- 622 (734)
Q Consensus 569 ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~~~~~d~~~~-~~~~~~------------------~~~~----~~-~g- 622 (734)
++.++|||+||.+++.++.++|+ +++++|+.+|....... .....+ ..+. .. ++
T Consensus 91 ~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (277)
T 1brt_A 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNL 170 (277)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTH
T ss_pred ceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhc
Confidence 89999999999999999999999 99999988764321100 000000 0000 00 11
Q ss_pred -----CCCCHHHHHHH----------------HhC--CccCCCCCCCCCccCCcEEEEecCCCCCCCChHH-HHHHHHHH
Q psy4818 623 -----SPNNKTHFHNL----------------LSY--SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS-YKFIATLQ 678 (734)
Q Consensus 623 -----~~~~~~~~~~~----------------~~~--sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~-~~~~~~L~ 678 (734)
....++..+.+ ... .....+.. ++.| +||++|++|..+|+..+ .++.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~ 245 (277)
T 1brt_A 171 DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPR----IDVP-ALILHGTGDRTLPIENTARVFHKALP 245 (277)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGG----CCSC-EEEEEETTCSSSCGGGTHHHHHHHCT
T ss_pred cccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhccc----CCCC-eEEEecCCCccCChHHHHHHHHHHCC
Confidence 11112211111 011 11112232 6777 99999999999999887 66666554
Q ss_pred hhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
. .++++++++||...... ..+..+.+.+||.
T Consensus 246 ~-----------~~~~~i~~~gH~~~~e~--p~~~~~~i~~fl~ 276 (277)
T 1brt_A 246 S-----------AEYVEVEGAPHGLLWTH--AEEVNTALLAFLA 276 (277)
T ss_dssp T-----------SEEEEETTCCTTHHHHT--HHHHHHHHHHHHH
T ss_pred C-----------CcEEEeCCCCcchhhhC--HHHHHHHHHHHHh
Confidence 3 37888999999864322 2355666778875
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-15 Score=149.32 Aligned_cols=224 Identities=14% Similarity=0.089 Sum_probs=135.6
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
.+...+|.++.....-|+ ..|.||++||.++.... .|.. ....|+ .||.|+++|+||.|..... ..
T Consensus 6 ~~~~~~g~~l~~~~~G~~------~~~~vvllHG~~~~~~~-~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~--~~--- 71 (286)
T 2yys_A 6 GYVPVGEAELYVEDVGPV------EGPALFVLHGGPGGNAY-VLRE-GLQDYL-EGFRVVYFDQRGSGRSLEL--PQ--- 71 (286)
T ss_dssp EEEECSSCEEEEEEESCT------TSCEEEEECCTTTCCSH-HHHH-HHGGGC-TTSEEEEECCTTSTTSCCC--CS---
T ss_pred eEEeECCEEEEEEeecCC------CCCEEEEECCCCCcchh-HHHH-HHHHhc-CCCEEEEECCCCCCCCCCC--cc---
Confidence 344467877766554331 34789999998765541 2433 345565 4999999999996643310 00
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-cc----------
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN-KF---------- 611 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~-~~---------- 611 (734)
.....+++++.+.+..+++. +..+++.++|||+||.+++.++.++|+ ++++|+..|..++.... ..
T Consensus 72 ~~~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (286)
T 2yys_A 72 DPRLFTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPLP 148 (286)
T ss_dssp CGGGCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCCS
T ss_pred CcccCcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccch
Confidence 00134566776666666655 234689999999999999999999999 99999988864221100 00
Q ss_pred ----ccCc--------ccccc--cCCC-------------------CCHHHH--HHHHhCCccCCCCCCCCCccCCcEEE
Q psy4818 612 ----TIAY--------YSESE--FGSP-------------------NNKTHF--HNLLSYSPLHNIKVPPNNTQYPATLV 656 (734)
Q Consensus 612 ----~~~~--------~~~~~--~g~~-------------------~~~~~~--~~~~~~sp~~~~~~p~~~~~~P~~Li 656 (734)
.... .+... +..+ .....+ ..+..+.....+.. +++| +||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lv 223 (286)
T 2yys_A 149 DPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTP----ERRP-LYV 223 (286)
T ss_dssp CHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCC----CSSC-EEE
T ss_pred hHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhh----cCCC-EEE
Confidence 0000 00000 0000 000000 00011111112332 7778 999
Q ss_pred EecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 657 ~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
++|++|..+++. +.++.+ +... ++++++++||....... .+..+.+.+||.+
T Consensus 224 i~G~~D~~~~~~-~~~~~~-~~~~-----------~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 275 (286)
T 2yys_A 224 LVGERDGTSYPY-AEEVAS-RLRA-----------PIRVLPEAGHYLWIDAP--EAFEEAFKEALAA 275 (286)
T ss_dssp EEETTCTTTTTT-HHHHHH-HHTC-----------CEEEETTCCSSHHHHCH--HHHHHHHHHHHHT
T ss_pred EEeCCCCcCCHh-HHHHHh-CCCC-----------CEEEeCCCCCCcChhhH--HHHHHHHHHHHHh
Confidence 999999999999 888887 7544 57889999998653322 3566678889875
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=144.77 Aligned_cols=223 Identities=17% Similarity=0.167 Sum_probs=129.1
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
+.+.||.+|.....-|+ ..|.||++||..+... .|.. ....|+++||.|+++|+||.|.....
T Consensus 4 ~~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~-~~~~L~~~g~~vi~~D~~G~G~S~~~-------- 66 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPR------DAPVIHFHHGWPLSAD--DWDA-QLLFFLAHGYRVVAHDRRGHGRSSQV-------- 66 (276)
T ss_dssp EECTTSCEEEEEEESCT------TSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EECCCCcEEEEEecCCC------CCCeEEEECCCCcchh--HHHH-HHHHHHhCCCEEEEecCCCCCCCCCC--------
Confidence 45678888765544221 3478999999765543 3444 34566667999999999996654311
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcchhcccc---ccccC-----
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGALDMLRFN---KFTIA----- 614 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~d~~~~~---~~~~~----- 614 (734)
....+++++.+.+..+++. .+.+++.++|||+||.+++.++.++ |++++++|+..+........ .....
T Consensus 67 ~~~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (276)
T 1zoi_A 67 WDGHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFD 144 (276)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCccccccccccccccHHHHH
Confidence 1123455555554444443 2345799999999999999877776 99999999877542110000 00000
Q ss_pred ----------cccc------cccCC-----CCCHHHHHH----------------HHhC---CccCCCCCCCCCccCCcE
Q psy4818 615 ----------YYSE------SEFGS-----PNNKTHFHN----------------LLSY---SPLHNIKVPPNNTQYPAT 654 (734)
Q Consensus 615 ----------~~~~------~~~g~-----~~~~~~~~~----------------~~~~---sp~~~~~~p~~~~~~P~~ 654 (734)
..+. ..++. ....+.... +... .....+.. +++| +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~ 219 (276)
T 1zoi_A 145 GFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKG----IQQP-V 219 (276)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHH----CCSC-E
T ss_pred HHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccc----cCCC-E
Confidence 0000 00110 011111111 1111 11111222 6677 9
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 655 LVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 655 Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
|+++|++|..+|+....+..+++ -...++++++++||...... ..+..+.+.+||.
T Consensus 220 l~i~G~~D~~~~~~~~~~~~~~~----------~~~~~~~~i~~~gH~~~~e~--p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 220 LVMHGDDDQIVPYENSGVLSAKL----------LPNGALKTYKGYPHGMPTTH--ADVINADLLAFIR 275 (276)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH----------STTEEEEEETTCCTTHHHHT--HHHHHHHHHHHHT
T ss_pred EEEEcCCCcccChHHHHHHHHhh----------CCCceEEEcCCCCCchhhhC--HHHHHHHHHHHhc
Confidence 99999999999988554443332 22468899999999864322 2455666778874
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=147.04 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=133.1
Q ss_pred EEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccc
Q psy4818 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLL 543 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~ 543 (734)
+.+.||.+|.....-+ +..|+||++||...... .|... ...|++ +|.|+++|.||.|.... .
T Consensus 9 ~~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~~~--~w~~~-~~~L~~-~~~vi~~D~rG~G~S~~--------~ 70 (266)
T 3om8_A 9 LATSDGASLAYRLDGA------AEKPLLALSNSIGTTLH--MWDAQ-LPALTR-HFRVLRYDARGHGASSV--------P 70 (266)
T ss_dssp EECTTSCEEEEEEESC------TTSCEEEEECCTTCCGG--GGGGG-HHHHHT-TCEEEEECCTTSTTSCC--------C
T ss_pred EeccCCcEEEEEecCC------CCCCEEEEeCCCccCHH--HHHHH-HHHhhc-CcEEEEEcCCCCCCCCC--------C
Confidence 4567898887654322 24688999999755443 34443 356775 89999999999664431 1
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc------c----c-cc
Q psy4818 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF------N----K-FT 612 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~------~----~-~~ 612 (734)
.....++++.+.+..+++.- ..+++.++|||+||.+++.++.++|++++++|+..+...+... . . ..
T Consensus 71 ~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
T 3om8_A 71 PGPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAED 148 (266)
T ss_dssp CSCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHcccc
Confidence 12345666666666665542 3457999999999999999999999999999987653211000 0 0 00
Q ss_pred cC-------cccc-ccc--CCCCCHHHH----------------HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCC
Q psy4818 613 IA-------YYSE-SEF--GSPNNKTHF----------------HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVP 666 (734)
Q Consensus 613 ~~-------~~~~-~~~--g~~~~~~~~----------------~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~ 666 (734)
.. ..|. ..+ ..+...+.+ ..+........+.. ++.| +||++|++|..+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~----i~~P-~Lvi~G~~D~~~~ 223 (266)
T 3om8_A 149 MSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLAR----IERP-TLVIAGAYDTVTA 223 (266)
T ss_dssp SHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGG----CCSC-EEEEEETTCSSSC
T ss_pred HHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcC----CCCC-EEEEEeCCCCCCC
Confidence 00 0000 000 001000111 01111111122333 7777 9999999999999
Q ss_pred ChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 667 PLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 667 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+.++..+.+.+... ++++++ +||....... .+..+.+.+||.
T Consensus 224 ~~~~~~l~~~ip~a-----------~~~~i~-~gH~~~~e~p--~~~~~~i~~Fl~ 265 (266)
T 3om8_A 224 ASHGELIAASIAGA-----------RLVTLP-AVHLSNVEFP--QAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHHHHHHSTTC-----------EEEEES-CCSCHHHHCH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCC-----------EEEEeC-CCCCccccCH--HHHHHHHHHHhc
Confidence 99888887776544 677777 7997643322 345556677763
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=149.05 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=120.5
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCch----hHHHHHHHHHHHcC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF----DDFQAAAEYMINKK 563 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~----~D~~~~~~~l~~~~ 563 (734)
.|.||++||..+... .|.. ....|+++||.|+++|+||.|... .. .....+ +|+.+++++|.+.+
T Consensus 16 ~~~vvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~GhG~s~---~~-----~~~~~~~~~~~d~~~~~~~l~~~~ 84 (247)
T 1tqh_A 16 ERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPP---EE-----LVHTGPDDWWQDVMNGYEFLKNKG 84 (247)
T ss_dssp SCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCH---HH-----HTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCChH--HHHH-HHHHHHHCCCEEEecccCCCCCCH---HH-----hcCCCHHHHHHHHHHHHHHHHHcC
Confidence 477899999765543 2333 446676679999999999966321 11 111122 44555566665544
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEE-cCCcchhc--ccc-cc-ccCcccccccCC---------------
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI-LVGALDML--RFN-KF-TIAYYSESEFGS--------------- 623 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~-~~~~~d~~--~~~-~~-~~~~~~~~~~g~--------------- 623 (734)
.+++.++|+|+||.+++.++.++| ++++|+ ..|..... ... .. .....+....+.
T Consensus 85 ---~~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (247)
T 1tqh_A 85 ---YEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQT 159 (247)
T ss_dssp ---CCCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTS
T ss_pred ---CCeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCC
Confidence 357999999999999999999999 677664 34432100 000 00 000000000000
Q ss_pred C-CCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCC
Q psy4818 624 P-NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702 (734)
Q Consensus 624 ~-~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~ 702 (734)
+ .....+..+. .+....+.. +++| +||++|++|..+|+..+.++++.+.. ...++++++++||.
T Consensus 160 ~~~~~~~~~~~~-~~~~~~l~~----i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~~---------~~~~~~~~~~~gH~ 224 (247)
T 1tqh_A 160 PMKTLKALQELI-ADVRDHLDL----IYAP-TFVVQARHDEMINPDSANIIYNEIES---------PVKQIKWYEQSGHV 224 (247)
T ss_dssp CCTTHHHHHHHH-HHHHHTGGG----CCSC-EEEEEETTCSSSCTTHHHHHHHHCCC---------SSEEEEEETTCCSS
T ss_pred CHHHHHHHHHHH-HHHHhhccc----CCCC-EEEEecCCCCCCCcchHHHHHHhcCC---------CceEEEEeCCCcee
Confidence 0 0000011000 011123333 6777 99999999999999998888776632 24689999999998
Q ss_pred CCCchHHhHHHHHHHHHHHHH
Q psy4818 703 QGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 703 ~~~~~~~~~~~~~~~~~fl~~ 723 (734)
...... ..+..+.+.+||.+
T Consensus 225 ~~~e~~-~~~~~~~i~~Fl~~ 244 (247)
T 1tqh_A 225 ITLDQE-KDQLHEDIYAFLES 244 (247)
T ss_dssp GGGSTT-HHHHHHHHHHHHHH
T ss_pred eccCcc-HHHHHHHHHHHHHh
Confidence 754322 13566778899875
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=151.69 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=135.6
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++..... ++.|+||++||..+.... |......++. +||.|+++|+||.|.... .....
T Consensus 17 ~g~~l~~~~~--------g~~~~vv~~HG~~~~~~~--~~~~~~~l~~-~g~~v~~~d~~G~G~S~~--------~~~~~ 77 (309)
T 3u1t_A 17 EGATIAYVDE--------GSGQPVLFLHGNPTSSYL--WRNIIPYVVA-AGYRAVAPDLIGMGDSAK--------PDIEY 77 (309)
T ss_dssp TTEEEEEEEE--------ECSSEEEEECCTTCCGGG--GTTTHHHHHH-TTCEEEEECCTTSTTSCC--------CSSCC
T ss_pred CCeEEEEEEc--------CCCCEEEEECCCcchhhh--HHHHHHHHHh-CCCEEEEEccCCCCCCCC--------CCccc
Confidence 6777655432 235789999998665443 4433333354 599999999999654331 12245
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc----c-----------cc
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN----K-----------FT 612 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~----~-----------~~ 612 (734)
.++++.+.+..+++. ...+++.|+|||+||++++.++.++|++++++|+..|........ . ..
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (309)
T 3u1t_A 78 RLQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLR 155 (309)
T ss_dssp CHHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHh
Confidence 677777766666654 234689999999999999999999999999999887654322000 0 00
Q ss_pred cC----------ccccc----c--cCCCCCHHHHHHHHhCCcc-------------------------------CCCCCC
Q psy4818 613 IA----------YYSES----E--FGSPNNKTHFHNLLSYSPL-------------------------------HNIKVP 645 (734)
Q Consensus 613 ~~----------~~~~~----~--~g~~~~~~~~~~~~~~sp~-------------------------------~~~~~p 645 (734)
.. ..+.. . .......+....+...... ..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 234 (309)
T 3u1t_A 156 TADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMA- 234 (309)
T ss_dssp STTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH-
T ss_pred ccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhccc-
Confidence 00 00000 0 0011111211111111000 00111
Q ss_pred CCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 646 ~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+++| +|+++|++|..+|+..+.++.+.+.. ..+.+++++||...... ..+....+.+||.++.
T Consensus 235 ---i~~P-~l~i~G~~D~~~~~~~~~~~~~~~~~-----------~~~~~~~~~gH~~~~~~--p~~~~~~i~~fl~~~~ 297 (309)
T 3u1t_A 235 ---SPIP-KLLFHAEPGALAPKPVVDYLSENVPN-----------LEVRFVGAGTHFLQEDH--PHLIGQGIADWLRRNK 297 (309)
T ss_dssp ---CCSC-EEEEEEEECSSSCHHHHHHHHHHSTT-----------EEEEEEEEESSCHHHHC--HHHHHHHHHHHHHHHC
T ss_pred ---CCCC-EEEEecCCCCCCCHHHHHHHHhhCCC-----------CEEEEecCCcccchhhC--HHHHHHHHHHHHHhcc
Confidence 4566 99999999999998887777776543 35666699999764332 2456667899999987
Q ss_pred CCC
Q psy4818 726 GLK 728 (734)
Q Consensus 726 ~~~ 728 (734)
+..
T Consensus 298 ~~~ 300 (309)
T 3u1t_A 298 PHA 300 (309)
T ss_dssp CCC
T ss_pred hhh
Confidence 654
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=147.94 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=119.0
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHH-----
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI----- 560 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~----- 560 (734)
++.|+||++||..+.... |. . ...|. +||.|+++|+||.|... .....+++++...+..++
T Consensus 14 ~~~~~vv~~hG~~~~~~~--~~-~-~~~l~-~g~~v~~~d~~g~g~s~---------~~~~~~~~~~~~~~~~~~~~~~~ 79 (245)
T 3e0x_A 14 KSPNTLLFVHGSGCNLKI--FG-E-LEKYL-EDYNCILLDLKGHGESK---------GQCPSTVYGYIDNVANFITNSEV 79 (245)
T ss_dssp TCSCEEEEECCTTCCGGG--GT-T-GGGGC-TTSEEEEECCTTSTTCC---------SCCCSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEeCCcccHHH--HH-H-HHHHH-hCCEEEEecCCCCCCCC---------CCCCcCHHHHHHHHHHHHHhhhh
Confidence 357899999998766543 33 2 23455 59999999999965432 112345667766666665
Q ss_pred -HcCCCCCCcEEEEEcChHHHHHHHHHhc-CCCceeEEEEcCCcchhccccccc-------cCc-------------ccc
Q psy4818 561 -NKKYTKPKYITIMGGSNGGLLVGACLNQ-RPELYGAALILVGALDMLRFNKFT-------IAY-------------YSE 618 (734)
Q Consensus 561 -~~~~~d~~ri~i~G~S~GG~~~~~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-------~~~-------------~~~ 618 (734)
+. .. ++.++|+|+||++++.++.+ +|+ ++++|+.+|........... ... .+.
T Consensus 80 ~~~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (245)
T 3e0x_A 80 TKH--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLS 154 (245)
T ss_dssp TTT--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHH
T ss_pred Hhh--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHH
Confidence 33 23 89999999999999999999 999 99999999877652111000 000 000
Q ss_pred ccc-CC-CCCHH----HHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 619 SEF-GS-PNNKT----HFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 619 ~~~-g~-~~~~~----~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
..+ .. ...+. .+..+..++....+.. ++.| +|+++|++|..+++..+.++++.+. .++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~-----------~~~ 218 (245)
T 3e0x_A 155 EKYFETLEKDPDIMINDLIACKLIDLVDNLKN----IDIP-VKAIVAKDELLTLVEYSEIIKKEVE-----------NSE 218 (245)
T ss_dssp HHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGG----CCSC-EEEEEETTCSSSCHHHHHHHHHHSS-----------SEE
T ss_pred HHHHHHHhcCcHHHHHHHHHhccccHHHHHHh----CCCC-EEEEEeCCCCCCCHHHHHHHHHHcC-----------Cce
Confidence 000 00 00111 1122233344444443 6677 9999999999999988877766553 358
Q ss_pred EEEeCCCCCCCC
Q psy4818 693 LRVEQDAGHGQG 704 (734)
Q Consensus 693 ~~~~~~~gH~~~ 704 (734)
+++++++||.+.
T Consensus 219 ~~~~~~~gH~~~ 230 (245)
T 3e0x_A 219 LKIFETGKHFLL 230 (245)
T ss_dssp EEEESSCGGGHH
T ss_pred EEEeCCCCcceE
Confidence 899999999864
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=162.27 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=87.0
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
.+..+++..||.++..... ++.|+||++||+.+... .|.. ....|+++||.|+++|+||.|.... .
T Consensus 237 ~~~~~~~~~dg~~l~~~~~--------g~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~v~~~D~~G~G~S~~---~ 302 (555)
T 3i28_A 237 MSHGYVTVKPRVRLHFVEL--------GSGPAVCLCHGFPESWY--SWRY-QIPALAQAGYRVLAMDMKGYGESSA---P 302 (555)
T ss_dssp SEEEEEEEETTEEEEEEEE--------CSSSEEEEECCTTCCGG--GGTT-HHHHHHHTTCEEEEECCTTSTTSCC---C
T ss_pred cceeEEEeCCCcEEEEEEc--------CCCCEEEEEeCCCCchh--HHHH-HHHHHHhCCCEEEEecCCCCCCCCC---C
Confidence 4555666678988875432 24689999999876654 3443 3456667799999999999654321 1
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
. ......++++.+.+..+++. .+.+++.++|||+||++++.++.++|++++++|+.+|.
T Consensus 303 ~---~~~~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 361 (555)
T 3i28_A 303 P---EIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 361 (555)
T ss_dssp S---CGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred C---CcccccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccC
Confidence 1 11223455555554444443 24568999999999999999999999999999987764
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=145.88 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=85.4
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.||.++.....-+ ...|.||++||..+... .|...+...|+++||.|+++|+||.|..... . .....
T Consensus 8 ~~g~~l~y~~~G~------~~~~~vvllHG~~~~~~--~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~--~---~~~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGD------PADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTR--D---FAAHP 74 (298)
T ss_dssp ETTEEEEEEEESC------TTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCC--C---TTTSC
T ss_pred cCCeEEEEEeccC------CCCCeEEEEcCCCCCcc--chHHHHHHHHHhCCCEEEeeCCCCCCCCCCC--C---CCcCC
Confidence 4787776554322 23478999999865543 4555454667777999999999996654310 0 01123
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
.+++++.+.+..+++. .+.+++.++|||+||.+++.++.++|++++++|+..+..
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 4566776666666554 344689999999999999999999999999999876644
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-15 Score=152.23 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=120.0
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|+||++||+.+.... |.. +...|++ ||.|+++|+||.|..... .......++++.+.+..+++. .+
T Consensus 22 ~~~~vv~~HG~~~~~~~--~~~-~~~~L~~-~~~vi~~d~~G~G~s~~~------~~~~~~~~~~~~~~~~~~~~~--l~ 89 (278)
T 3oos_A 22 EGPPLCVTHLYSEYNDN--GNT-FANPFTD-HYSVYLVNLKGCGNSDSA------KNDSEYSMTETIKDLEAIREA--LY 89 (278)
T ss_dssp SSSEEEECCSSEECCTT--CCT-TTGGGGG-TSEEEEECCTTSTTSCCC------SSGGGGSHHHHHHHHHHHHHH--TT
T ss_pred CCCeEEEEcCCCcchHH--HHH-HHHHhhc-CceEEEEcCCCCCCCCCC------CCcccCcHHHHHHHHHHHHHH--hC
Confidence 45789999998665544 332 2356776 999999999996643211 111234567777777666665 34
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc----cCcc-------ccccc--------------
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT----IAYY-------SESEF-------------- 621 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~----~~~~-------~~~~~-------------- 621 (734)
.+++.++|||+||.+++.++.++|++++++|+..|........... .... ....+
T Consensus 90 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (278)
T 3oos_A 90 INKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALS 169 (278)
T ss_dssp CSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred CCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHH
Confidence 4589999999999999999999999999999999877611100000 0000 00000
Q ss_pred ------------------CCCC----CHHHHHHHH-----hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHH
Q psy4818 622 ------------------GSPN----NKTHFHNLL-----SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674 (734)
Q Consensus 622 ------------------g~~~----~~~~~~~~~-----~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~ 674 (734)
..+. ....+..+. ..+....+.. +++| +|+++|++|..+++..+.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~l~i~g~~D~~~~~~~~~~~~ 244 (278)
T 3oos_A 170 REWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKF----VKIP-SFIYCGKHDVQCPYIFSCEIA 244 (278)
T ss_dssp HHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTT----CCSC-EEEEEETTCSSSCHHHHHHHH
T ss_pred HHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhC----CCCC-EEEEEeccCCCCCHHHHHHHH
Confidence 0000 001111111 1111122232 6777 999999999999998887777
Q ss_pred HHHHhhhCCCCCCCCcEEEEEeCCCCCCCC
Q psy4818 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 675 ~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~ 704 (734)
+.+. .+++++++++||...
T Consensus 245 ~~~~-----------~~~~~~~~~~gH~~~ 263 (278)
T 3oos_A 245 NLIP-----------NATLTKFEESNHNPF 263 (278)
T ss_dssp HHST-----------TEEEEEETTCSSCHH
T ss_pred hhCC-----------CcEEEEcCCcCCCcc
Confidence 6653 348899999999864
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=145.02 Aligned_cols=205 Identities=15% Similarity=0.087 Sum_probs=118.8
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||.++.... |.... ..|.++||.|+++|+||.|.... .....+++++.+.+..+++. ...
T Consensus 27 g~~vvllHG~~~~~~~--w~~~~-~~l~~~g~~vi~~D~~G~G~S~~--------~~~~~~~~~~a~dl~~ll~~--l~~ 93 (281)
T 3fob_A 27 GKPVVLIHGWPLSGRS--WEYQV-PALVEAGYRVITYDRRGFGKSSQ--------PWEGYEYDTFTSDLHQLLEQ--LEL 93 (281)
T ss_dssp SEEEEEECCTTCCGGG--GTTTH-HHHHHTTEEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHH--TTC
T ss_pred CCeEEEECCCCCcHHH--HHHHH-HHHHhCCCEEEEeCCCCCCCCCC--------CccccCHHHHHHHHHHHHHH--cCC
Confidence 4668889998776554 33333 45555699999999999664431 11234566766666666655 244
Q ss_pred CcEEEEEcChHHHHHHHHHhc-CCCceeEEEEcCCcchhccc-cccccC--c--------------------ccccc-cC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQ-RPELYGAALILVGALDMLRF-NKFTIA--Y--------------------YSESE-FG 622 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~-~p~~~~a~v~~~~~~d~~~~-~~~~~~--~--------------------~~~~~-~g 622 (734)
+++.|+|||+||.+++.++.+ .|++++++|+..+....... .....+ . .+... +.
T Consensus 94 ~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T 3fob_A 94 QNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFA 173 (281)
T ss_dssp CSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhcc
Confidence 689999999999877766554 58999999887654211100 000000 0 00000 00
Q ss_pred -----CCCCHHHH-------------------HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHH
Q psy4818 623 -----SPNNKTHF-------------------HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678 (734)
Q Consensus 623 -----~~~~~~~~-------------------~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~ 678 (734)
.....+.. ..+...+....+.. +++| +||++|++|..+|+..+.++.++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~----i~~P-~Lii~G~~D~~~p~~~~~~~~~~~- 247 (281)
T 3fob_A 174 AGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEK----FNIP-TLIIHGDSDATVPFEYSGKLTHEA- 247 (281)
T ss_dssp BTTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTT----CCSC-EEEEEETTCSSSCGGGTHHHHHHH-
T ss_pred cccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhh----cCCC-EEEEecCCCCCcCHHHHHHHHHHh-
Confidence 00111110 01111111122333 6777 999999999999998764443322
Q ss_pred hhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
-...++.+++++||....... .+..+.+.+||.
T Consensus 248 ---------~p~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 280 (281)
T 3fob_A 248 ---------IPNSKVALIKGGPHGLNATHA--KEFNEALLLFLK 280 (281)
T ss_dssp ---------STTCEEEEETTCCTTHHHHTH--HHHHHHHHHHHC
T ss_pred ---------CCCceEEEeCCCCCchhhhhH--HHHHHHHHHHhh
Confidence 123478999999998643322 355566777763
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=146.60 Aligned_cols=210 Identities=10% Similarity=0.073 Sum_probs=129.8
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|+||++||..+.... |.. +...|++ ||.|+++|+||.|....... ......+++++.+.+..+++. .+
T Consensus 19 ~~p~vv~~HG~~~~~~~--~~~-~~~~l~~-g~~v~~~D~~G~G~S~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~ 88 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQSA--WNR-ILPFFLR-DYRVVLYDLVCAGSVNPDFF----DFRRYTTLDPYVDDLLHILDA--LG 88 (269)
T ss_dssp CSSEEEEECCTTCCGGG--GTT-TGGGGTT-TCEEEEECCTTSTTSCGGGC----CTTTCSSSHHHHHHHHHHHHH--TT
T ss_pred CCCEEEEEeCCCCcHHH--HHH-HHHHHhC-CcEEEEEcCCCCCCCCCCCC----CccccCcHHHHHHHHHHHHHh--cC
Confidence 45899999997655433 332 3356776 99999999999665432110 111223567777776666655 34
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC-----------------cccccc----cCCCC
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA-----------------YYSESE----FGSPN 625 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~-----------------~~~~~~----~g~~~ 625 (734)
.+++.++|||+||++++.++.++|++++++|+..|............. ..|... .....
T Consensus 89 ~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (269)
T 4dnp_A 89 IDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGAD 168 (269)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSS
T ss_pred CCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCC
Confidence 568999999999999999999999999999999886543221100000 000000 00011
Q ss_pred CHHHH-------------------HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCC
Q psy4818 626 NKTHF-------------------HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPY 686 (734)
Q Consensus 626 ~~~~~-------------------~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~ 686 (734)
..+.. ..+...+....+.. ++.| +|+++|++|..+++..+.++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~-------- 235 (269)
T 4dnp_A 169 VPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGL----VKVP-CHIFQTARDHSVPASVATYLKNHLG-------- 235 (269)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGG----CCSC-EEEEEEESBTTBCHHHHHHHHHHSS--------
T ss_pred ChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhcc----ccCC-EEEEecCCCcccCHHHHHHHHHhCC--------
Confidence 11111 11112222233333 6777 9999999999999988877776553
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 687 QKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 687 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
..+++++++++||....... .+....+.+||.+
T Consensus 236 --~~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 236 --GKNTVHWLNIEGHLPHLSAP--TLLAQELRRALSH 268 (269)
T ss_dssp --SCEEEEEEEEESSCHHHHCH--HHHHHHHHHHHC-
T ss_pred --CCceEEEeCCCCCCccccCH--HHHHHHHHHHHhh
Confidence 22688999999998643222 3455566777754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-14 Score=160.79 Aligned_cols=260 Identities=10% Similarity=-0.031 Sum_probs=160.6
Q ss_pred EeCCe-EEEEEEcCCCCeeEEEEEeCC--C-CCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC-----CCceE
Q psy4818 98 RQENN-YFYFHNKGLQNHSILYVQRNL--T-GSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS-----GSDWN 168 (734)
Q Consensus 98 ~~g~~-~~~~~~~~~~~~~~l~~~~~~--~-g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~-----g~~~~ 168 (734)
|||++ ++|..... ..||+.+.. + +..+.|+.... ..+...+..++|||||++|+|+.... +....
T Consensus 88 PDg~~~la~~~~~~----~~l~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHFGD----QRLYAFEPDAPGGAVPRPLTPVSA--VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBTTT----CCEEEECTTSTTCCCCEECSCCCC--STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEECCC----CeEEEEcCCCCCCCCCEeccCCcc--CCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 78999 88876542 458988865 4 66666654210 00235578899999999999998641 13347
Q ss_pred EEEEEECCC------CCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECC-CCCC-CC
Q psy4818 169 TLHIKDVDT------GKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLG-TEQD-KD 239 (734)
Q Consensus 169 ~l~v~dl~~------g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-t~~~-~~ 239 (734)
+|+++|+++ |+....+ ........++|||||++|+|.+.+... ......+||++++. ++.. +.
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~--------~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR--------MPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTC--------CTTTCEEEEEEEECTTSCEEEE
T ss_pred EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCC--------CCCCCcEEEEEEECCCCccccc
Confidence 999999998 6654433 323334679999999999999864310 01123579999998 3411 12
Q ss_pred eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc----------eEEE
Q psy4818 240 IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH----------HHEI 309 (734)
Q Consensus 240 ~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~----------~~~~ 309 (734)
..+.... ......+.|||||+ |++..... ....||++|++++.. ..++..... ....
T Consensus 234 ~~l~~~~--~~~~~~~~~spdg~-l~~~~~~~-~~~~l~~~~~~~~~~---------~~l~~~~~~~~~p~w~~~~~~~~ 300 (662)
T 3azo_A 234 RTLLGGP--EEAIAQAEWAPDGS-LIVATDRT-GWWNLHRVDPATGAA---------TQLCRREEEFAGPLWTPGMRWFA 300 (662)
T ss_dssp EEEEEET--TBCEEEEEECTTSC-EEEEECTT-SSCEEEEECTTTCCE---------EESSCCSSBSSCCCCSTTCCSEE
T ss_pred EEeCCCC--CceEcceEECCCCe-EEEEECCC-CCeEEEEEECCCCce---------eecccccccccCccccccCceEe
Confidence 2233321 22456799999999 77766543 335899999876332 222211110 0112
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC-ceeEEEEECCCCce
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV-RSVMDLHDLNTGKR 388 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~~dl~~g~~ 388 (734)
++++++ +++..+. ...+|+.+|++++. .+.+..+. ..+..+...+++.+++...... ...|+++|+.+|+.
T Consensus 301 ~~~~~~-~~~~~~~--~~~~l~~~d~~~~~---~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 301 PLANGL-IAVVHGK--GAAVLGILDPESGE---LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp ECTTSC-EEEEEBS--SSCEEEEEETTTTE---EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EeCCCE-EEEEEEc--CccEEEEEECCCCc---EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 556655 6666665 46679999988765 35554332 3344442345577777665443 45899999977765
Q ss_pred eeeeC
Q psy4818 389 LHSFP 393 (734)
Q Consensus 389 ~~~l~ 393 (734)
+.++
T Consensus 373 -~~l~ 376 (662)
T 3azo_A 373 -RTIG 376 (662)
T ss_dssp -EEEE
T ss_pred -EEee
Confidence 4443
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=144.38 Aligned_cols=219 Identities=16% Similarity=0.122 Sum_probs=125.2
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++.....- ...|.||++||..+.. ...|.. ....|.++||.|+++|+||.|..... . ......
T Consensus 10 ~g~~l~~~~~g-------~~~~~vvllHG~~~~~-~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~---~--~~~~~~ 75 (254)
T 2ocg_A 10 NGVQLHYQQTG-------EGDHAVLLLPGMLGSG-ETDFGP-QLKNLNKKLFTVVAWDPRGYGHSRPP---D--RDFPAD 75 (254)
T ss_dssp TTEEEEEEEEE-------CCSEEEEEECCTTCCH-HHHCHH-HHHHSCTTTEEEEEECCTTSTTCCSS---C--CCCCTT
T ss_pred CCEEEEEEEec-------CCCCeEEEECCCCCCC-ccchHH-HHHHHhhCCCeEEEECCCCCCCCCCC---C--CCCChH
Confidence 67766544321 1235789999976541 122443 34567777899999999996654211 0 011111
Q ss_pred chh-HHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc-----cccccCccccc--
Q psy4818 548 CFD-DFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF-----NKFTIAYYSES-- 619 (734)
Q Consensus 548 ~~~-D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~-----~~~~~~~~~~~-- 619 (734)
.++ ++.++++++.+. +.+++.++|||+||.+++.++.++|++++++|+..+...+... ........|..
T Consensus 76 ~~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (254)
T 2ocg_A 76 FFERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERT 152 (254)
T ss_dssp HHHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHHh
Confidence 132 334444444443 3468999999999999999999999999999987764321100 00000001110
Q ss_pred ------ccCCCCCHH----HHHHHHhCC-------ccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 620 ------EFGSPNNKT----HFHNLLSYS-------PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 620 ------~~g~~~~~~----~~~~~~~~s-------p~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
.++...... ....+.... ....+.. +++| +||++|++|..+|+..+..+.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~--- 224 (254)
T 2ocg_A 153 RKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPR----VQCP-ALIVHGEKDPLVPRFHADFIHKHVKG--- 224 (254)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGG----CCSC-EEEEEETTCSSSCHHHHHHHHHHSTT---
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhc----ccCC-EEEEecCCCccCCHHHHHHHHHhCCC---
Confidence 011000000 001111110 0112222 6777 99999999999999888777665543
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHH
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
.++++++++||....... .+..+.+.+||
T Consensus 225 --------~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl 253 (254)
T 2ocg_A 225 --------SRLHLMPEGKHNLHLRFA--DEFNKLAEDFL 253 (254)
T ss_dssp --------CEEEEETTCCTTHHHHTH--HHHHHHHHHHH
T ss_pred --------CEEEEcCCCCCchhhhCH--HHHHHHHHHHh
Confidence 378889999998653222 34555566776
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=148.44 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=89.8
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.+|....+.+ +..|+||++||..+.... |.. +...|.++||.|+++|+||.|.... . .....
T Consensus 11 ~~g~~l~~~~~g~------~~~~~vv~~hG~~~~~~~--~~~-~~~~l~~~G~~v~~~d~~G~G~s~~---~---~~~~~ 75 (286)
T 3qit_A 11 FGGNQICLCSWGS------PEHPVVLCIHGILEQGLA--WQE-VALPLAAQGYRVVAPDLFGHGRSSH---L---EMVTS 75 (286)
T ss_dssp ETTEEEEEEEESC------TTSCEEEEECCTTCCGGG--GHH-HHHHHHHTTCEEEEECCTTSTTSCC---C---SSGGG
T ss_pred cCCceEEEeecCC------CCCCEEEEECCCCcccch--HHH-HHHHhhhcCeEEEEECCCCCCCCCC---C---CCCCC
Confidence 4788888776643 346899999998765543 443 4566777799999999999554321 1 11133
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchh
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM 605 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~ 605 (734)
..++++.+.+..++++ .+.+++.++|+|+||++++.++.++|+.++++|+.+|....
T Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 132 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPA 132 (286)
T ss_dssp CSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCC
T ss_pred cCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCC
Confidence 4567777777766665 34468999999999999999999999999999999887643
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=148.16 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=78.7
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++.....-+ +.+.|.||++||+++....+ |. .+..++ +.||.|+++|+||.|.... .. ....
T Consensus 13 ~g~~l~~~~~g~-----~~~~~~vvllHG~~~~~~~~-~~-~~~~l~-~~g~~vi~~D~~G~G~S~~---~~----~~~~ 77 (293)
T 1mtz_A 13 NGIYIYYKLCKA-----PEEKAKLMTMHGGPGMSHDY-LL-SLRDMT-KEGITVLFYDQFGCGRSEE---PD----QSKF 77 (293)
T ss_dssp TTEEEEEEEECC-----SSCSEEEEEECCTTTCCSGG-GG-GGGGGG-GGTEEEEEECCTTSTTSCC---CC----GGGC
T ss_pred CCEEEEEEEECC-----CCCCCeEEEEeCCCCcchhH-HH-HHHHHH-hcCcEEEEecCCCCccCCC---CC----CCcc
Confidence 676665443321 11237889999987655332 22 233444 5699999999999664321 11 1123
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcch
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d 604 (734)
+++++.+.+..+++.- ...+++.|+|||+||.+++.++.++|++++++|+.+|...
T Consensus 78 ~~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 133 (293)
T 1mtz_A 78 TIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 133 (293)
T ss_dssp SHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred cHHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccC
Confidence 4555555555444431 0235799999999999999999999999999999888654
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=147.63 Aligned_cols=227 Identities=15% Similarity=0.117 Sum_probs=135.4
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
.+...++. +|.++..+..- .+..|+||++||+.+.... |.. +...|++ ||.|+++|+||.|+....
T Consensus 45 ~~~~~v~~-~~~~~~~~~~g------~~~~~~vv~lHG~~~~~~~--~~~-~~~~L~~-g~~vi~~D~~G~gG~s~~--- 110 (306)
T 2r11_A 45 CKSFYIST-RFGQTHVIASG------PEDAPPLVLLHGALFSSTM--WYP-NIADWSS-KYRTYAVDIIGDKNKSIP--- 110 (306)
T ss_dssp CEEEEECC-TTEEEEEEEES------CTTSCEEEEECCTTTCGGG--GTT-THHHHHH-HSEEEEECCTTSSSSCEE---
T ss_pred cceEEEec-CCceEEEEeeC------CCCCCeEEEECCCCCCHHH--HHH-HHHHHhc-CCEEEEecCCCCCCCCCC---
Confidence 34555554 44456554422 1346899999998765543 333 2355676 999999999996332211
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc----ccC
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF----TIA 614 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~----~~~ 614 (734)
......++++...+..+++. .+.+++.++|+|+||++++.++.++|++++++|+.+|.......... ...
T Consensus 111 ----~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 184 (306)
T 2r11_A 111 ----ENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALG 184 (306)
T ss_dssp ----CSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHT
T ss_pred ----CCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhH
Confidence 11234567777766666654 34468999999999999999999999999999999987754221100 000
Q ss_pred ---ccccc---cc--CCC-CCHHHH---HHH-Hh----CCccC-------------CCCCCCCCccCCcEEEEecCCCCC
Q psy4818 615 ---YYSES---EF--GSP-NNKTHF---HNL-LS----YSPLH-------------NIKVPPNNTQYPATLVLTGDHDDR 664 (734)
Q Consensus 615 ---~~~~~---~~--g~~-~~~~~~---~~~-~~----~sp~~-------------~~~~p~~~~~~P~~Li~~g~~D~~ 664 (734)
..+.. .+ +.. .....+ ... .. ...+. .+. .+++| +|+++|++|..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~P-~lii~G~~D~~ 259 (306)
T 2r11_A 185 LTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELR----SARVP-ILLLLGEHEVI 259 (306)
T ss_dssp TTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHH----TCCSC-EEEEEETTCCS
T ss_pred HHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHh----cCCCC-EEEEEeCCCcc
Confidence 00000 00 110 000000 000 00 00000 011 25667 99999999999
Q ss_pred CCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 665 VPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 665 v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+++.++.++.+++ ...+++++++++||....... .+....+.+||.
T Consensus 260 ~~~~~~~~~~~~~----------~~~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl~ 305 (306)
T 2r11_A 260 YDPHSALHRASSF----------VPDIEAEVIKNAGHVLSMEQP--TYVNERVMRFFN 305 (306)
T ss_dssp SCHHHHHHHHHHH----------STTCEEEEETTCCTTHHHHSH--HHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHH----------CCCCEEEEeCCCCCCCcccCH--HHHHHHHHHHHh
Confidence 9988777665543 223578999999997643222 355566777764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-12 Score=137.24 Aligned_cols=238 Identities=12% Similarity=0.096 Sum_probs=158.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+..++|||||++|+++.... ..|++||+.+++.+...........++|+|||+.|+++...
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d----~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~--------------- 94 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHS----NDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA--------------- 94 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT---------------
T ss_pred cceEEECCCCCEEEEECCCC----CeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECC---------------
Confidence 67899999999997766433 37999999999865433322244689999999999887632
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
...|+++++.++.. +..+... . ....+.|+|||++|++.... ...|++||+.++. ....+...
T Consensus 95 ~~~v~v~d~~~~~~--~~~~~~~--~-~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~---------~~~~~~~~ 157 (391)
T 1l0q_A 95 SSTLSVIDTTSNTV--AGTVKTG--K-SPLGLALSPDGKKLYVTNNG---DKTVSVINTVTKA---------VINTVSVG 157 (391)
T ss_dssp TTEEEEEETTTTEE--EEEEECS--S-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE---------EEEEEECC
T ss_pred CCEEEEEECCCCeE--EEEEeCC--C-CcceEEECCCCCEEEEEeCC---CCEEEEEECCCCc---------EEEEEecC
Confidence 23799999887642 2233322 2 34678999999999776532 3689999998731 11222211
Q ss_pred cceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC-CEEEEEEEeCCceeEEEE
Q psy4818 304 DHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN-NKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 304 ~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~ 381 (734)
..... .|+|+|+.+++.... ...|+.+|+.++. ....+... ..+..+.+..+ +.+++.........|++|
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~---~~~v~~~d~~~~~---~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNS---VIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE---EEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred CCcceEEECCCCCEEEEEeCC---CCEEEEEECCCCe---EEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 22223 399999988776544 3569999998764 33444433 23344444433 455555442244689999
Q ss_pred ECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 382 dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.+++.+..+.... .+..+.++++++.++++.+.. ..++.+|+
T Consensus 230 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~ 273 (391)
T 1l0q_A 230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFX---NTVSVIDT 273 (391)
T ss_dssp ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTT---TEEEEEET
T ss_pred ECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCC---CEEEEEEC
Confidence 998888777776543 355778889998887776443 57999999
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=147.03 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=84.0
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcc
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAG 540 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~ 540 (734)
..+++..||.++.....-+ ...|.||++||+++......+ ..++...||.|+++|+||.|.... .
T Consensus 16 ~~~~~~~~g~~l~~~~~g~------~~g~~vvllHG~~~~~~~~~~----~~~~~~~~~~vi~~D~~G~G~S~~---~-- 80 (317)
T 1wm1_A 16 SGWLDTGDGHRIYWELSGN------PNGKPAVFIHGGPGGGISPHH----RQLFDPERYKVLLFDQRGCGRSRP---H-- 80 (317)
T ss_dssp EEEEECSSSCEEEEEEEEC------TTSEEEEEECCTTTCCCCGGG----GGGSCTTTEEEEEECCTTSTTCBS---T--
T ss_pred eeEEEcCCCcEEEEEEcCC------CCCCcEEEECCCCCcccchhh----hhhccccCCeEEEECCCCCCCCCC---C--
Confidence 3456666888776543322 123568999998765432222 233434699999999999654321 1
Q ss_pred ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 541 RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 541 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.......++++.+.+..+++. .+.+++.|+|||+||.+++.++.++|++++++|+..+.
T Consensus 81 -~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 139 (317)
T 1wm1_A 81 -ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139 (317)
T ss_dssp -TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -cccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence 111234567777777776665 34467999999999999999999999999999987654
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=144.88 Aligned_cols=211 Identities=14% Similarity=0.096 Sum_probs=125.9
Q ss_pred CCCcEEEEecCCCCCcCCcc-ccHHHHHHHHhcCeEEEEEecccCC--------------------CCCchhhhcccccc
Q psy4818 486 RRNPVIIYGYGGYGVSVLPT-FSISRCMFLRHFNGIYAIPNIRGGG--------------------ELGEDWHNAGRLLK 544 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~~--------------------~~g~~~~~~~~~~~ 544 (734)
.+.|+||++||..+...... ....+...|.++||.|+.+|.|+.. +....|....
T Consensus 3 ~~~~~vl~lHG~g~~~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~~---- 78 (243)
T 1ycd_A 3 VQIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHS---- 78 (243)
T ss_dssp CCCCEEEEECCTTCCHHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCCC----
T ss_pred CcCceEEEeCCCCccHHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccCC----
Confidence 35689999999755443211 1123455666669999999999321 1112333211
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCC------CceeEEEEcCCcchhccccccccCcccc
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP------ELYGAALILVGALDMLRFNKFTIAYYSE 618 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p------~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 618 (734)
.....+|+.+++++|.+....+..+++|+|+|+||.+++.++.+.+ ..+++++..+++......... .+.
T Consensus 79 ~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-~~~--- 154 (243)
T 1ycd_A 79 EISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDPEH-PGE--- 154 (243)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECTTS-TTC---
T ss_pred CCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccccc-ccc---
Confidence 1123456667777765542234468999999999999999987642 146777777776532111000 000
Q ss_pred cccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCC
Q psy4818 619 SEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698 (734)
Q Consensus 619 ~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 698 (734)
..+. +.+ . ..+..+.. +++| +|++||++|+.||+.++.++++.++..... ...... .++++
T Consensus 155 ~~~~-----~~~---~--~~~~~~~~----~~~P-~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~---~~~~~~-~~~~~ 215 (243)
T 1ycd_A 155 LRIT-----EKF---R--DSFAVKPD----MKTK-MIFIYGASDQAVPSVRSKYLYDIYLKAQNG---NKEKVL-AYEHP 215 (243)
T ss_dssp EEEC-----GGG---T--TTTCCCTT----CCCE-EEEEEETTCSSSCHHHHHHHHHHHHHHTTT---CTTTEE-EEEES
T ss_pred cccc-----hhH---H--HhccCccc----CCCC-EEEEEeCCCCccCHHHHHHHHHHhhhhccc---cccccE-EEecC
Confidence 0000 000 0 11222222 5666 999999999999999999999998764000 001233 45667
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 699 AGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 699 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+||.+.... +....+.+||.+++..
T Consensus 216 ~gH~~~~~~----~~~~~i~~fl~~~~~~ 240 (243)
T 1ycd_A 216 GGHMVPNKK----DIIRPIVEQITSSLQE 240 (243)
T ss_dssp SSSSCCCCH----HHHHHHHHHHHHHHC-
T ss_pred CCCcCCchH----HHHHHHHHHHHHhhhh
Confidence 899876432 4667789999998764
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-15 Score=151.33 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=125.2
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
++.|+||++||..+.... |.......|.++||.|+++|+||.|. .-. .....++++.+.+..+++. .
T Consensus 41 g~~~~vv~lHG~~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~---s~~------~~~~~~~~~~~~~~~~l~~--l 107 (293)
T 3hss_A 41 GTGDPVVFIAGRGGAGRT--WHPHQVPAFLAAGYRCITFDNRGIGA---TEN------AEGFTTQTMVADTAALIET--L 107 (293)
T ss_dssp CSSEEEEEECCTTCCGGG--GTTTTHHHHHHTTEEEEEECCTTSGG---GTT------CCSCCHHHHHHHHHHHHHH--H
T ss_pred CCCCEEEEECCCCCchhh--cchhhhhhHhhcCCeEEEEccCCCCC---CCC------cccCCHHHHHHHHHHHHHh--c
Confidence 356889999998766543 33222344545699999999999532 211 1224566666665555544 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc-------------cccCccc------cccc-----
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK-------------FTIAYYS------ESEF----- 621 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-------------~~~~~~~------~~~~----- 621 (734)
+.+++.++|+|+||.+++.++.++|+.++++|+.+|......... ......+ ...+
T Consensus 108 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (293)
T 3hss_A 108 DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTL 187 (293)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHH
T ss_pred CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhcccccc
Confidence 446899999999999999999999999999999988653321100 0000000 0000
Q ss_pred CC---------------CCCHHHHHHHHhC----CccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 622 GS---------------PNNKTHFHNLLSY----SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 622 g~---------------~~~~~~~~~~~~~----sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
.. ......+...... .....+.. +++| +|+++|++|..+++..+.++.+.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~g~~D~~~~~~~~~~~~~~~~---- 258 (293)
T 3hss_A 188 NDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRN----IAAP-VLVIGFADDVVTPPYLGREVADALP---- 258 (293)
T ss_dssp TCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTT----CCSC-EEEEEETTCSSSCHHHHHHHHHHST----
T ss_pred cccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhh----CCCC-EEEEEeCCCCCCCHHHHHHHHHHCC----
Confidence 00 0000000000000 01111222 6677 9999999999999988777776653
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.+++++++++||....... .+....+.+||.+
T Consensus 259 -------~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~ 290 (293)
T 3hss_A 259 -------NGRYLQIPDAGHLGFFERP--EAVNTAMLKFFAS 290 (293)
T ss_dssp -------TEEEEEETTCCTTHHHHSH--HHHHHHHHHHHHT
T ss_pred -------CceEEEeCCCcchHhhhCH--HHHHHHHHHHHHh
Confidence 2478999999998643322 3455667778764
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=152.46 Aligned_cols=210 Identities=10% Similarity=0.079 Sum_probs=131.2
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|+||++||..+... .|.. +...|++ ||.|+++|+||.|........ .....+++++.+.+..+++. .+.
T Consensus 28 ~~~vv~lHG~~~~~~--~~~~-~~~~l~~-g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~ 97 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQN--MWRF-MLPELEK-QFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVA--LDL 97 (282)
T ss_dssp SCEEEEECCTTCCGG--GGTT-THHHHHT-TSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHH--TTC
T ss_pred CCeEEEECCCCCCcc--hHHH-HHHHHhc-CceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHH--cCC
Confidence 389999999766544 3333 3466776 999999999996654322110 01122566776666666654 244
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC------------------ccccc-----ccCCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA------------------YYSES-----EFGSP 624 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~------------------~~~~~-----~~g~~ 624 (734)
+++.++|||+||.+++.++.++|+.++++|+.+|............. ..|.. .++.+
T Consensus 98 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (282)
T 3qvm_A 98 VNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGAS 177 (282)
T ss_dssp CSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTT
T ss_pred CceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCc
Confidence 78999999999999999999999999999999986543321100000 00000 01112
Q ss_pred CCHHHHH-------------------HHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCC
Q psy4818 625 NNKTHFH-------------------NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLP 685 (734)
Q Consensus 625 ~~~~~~~-------------------~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~ 685 (734)
...+... .+........+.. ++.| +|+++|++|..+++..+.++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~------- 245 (282)
T 3qvm_A 178 HSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLED----ISTP-ALIFQSAKDSLASPEVGQYMAENIP------- 245 (282)
T ss_dssp SCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGG----CCSC-EEEEEEEECTTCCHHHHHHHHHHSS-------
T ss_pred cchhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhc----CCCC-eEEEEeCCCCcCCHHHHHHHHHhCC-------
Confidence 1111111 1111112223333 6677 9999999999999988877766553
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 686 YQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 686 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
..++++++++||.+.... ..+....+.+||.++.
T Consensus 246 ----~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 246 ----NSQLELIQAEGHCLHMTD--AGLITPLLIHFIQNNQ 279 (282)
T ss_dssp ----SEEEEEEEEESSCHHHHC--HHHHHHHHHHHHHHC-
T ss_pred ----CCcEEEecCCCCcccccC--HHHHHHHHHHHHHhcC
Confidence 348899999999864322 2356667888988753
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-15 Score=150.40 Aligned_cols=208 Identities=14% Similarity=0.040 Sum_probs=124.7
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHh-cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRH-FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+.|+||++||..+... .|.... ..|.+ +||.|+++|+||.|.... .. . ..++++...+..++++. .
T Consensus 20 ~~~~vv~lhG~~~~~~--~~~~~~-~~l~~~~g~~v~~~d~~G~G~s~~---~~-----~-~~~~~~~~~~~~~l~~~-~ 86 (272)
T 3fsg_A 20 SGTPIIFLHGLSLDKQ--STCLFF-EPLSNVGQYQRIYLDLPGMGNSDP---IS-----P-STSDNVLETLIEAIEEI-I 86 (272)
T ss_dssp CSSEEEEECCTTCCHH--HHHHHH-TTSTTSTTSEEEEECCTTSTTCCC---CS-----S-CSHHHHHHHHHHHHHHH-H
T ss_pred CCCeEEEEeCCCCcHH--HHHHHH-HHHhccCceEEEEecCCCCCCCCC---CC-----C-CCHHHHHHHHHHHHHHH-h
Confidence 4578999999765442 233322 33544 699999999999554321 11 1 44555555444444331 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC------ccccc--------cc---CCCCCHH
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA------YYSES--------EF---GSPNNKT 628 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~------~~~~~--------~~---g~~~~~~ 628 (734)
+.+++.++|||+||.+++.++.++|+.++++|+.+|............. ..+.. .+ .......
T Consensus 87 ~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (272)
T 3fsg_A 87 GARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQ 166 (272)
T ss_dssp TTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHH
T ss_pred CCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCc
Confidence 3468999999999999999999999999999998887532211100000 00000 00 0000001
Q ss_pred H-------------------HHHHHhCCccC-----CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCC
Q psy4818 629 H-------------------FHNLLSYSPLH-----NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSL 684 (734)
Q Consensus 629 ~-------------------~~~~~~~sp~~-----~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~ 684 (734)
. ...+.....+. .+.. ++.| +|+++|++|..+|+..+.++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~------ 235 (272)
T 3fsg_A 167 AWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNIN----YQFP-FKIMVGRNDQVVGYQEQLKLINHNE------ 235 (272)
T ss_dssp HHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCC----CSSC-EEEEEETTCTTTCSHHHHHHHTTCT------
T ss_pred hhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhcc----CCCC-EEEEEeCCCCcCCHHHHHHHHHhcC------
Confidence 0 11111111110 1222 6777 9999999999999988877665442
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 685 PYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 685 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
.+++++++++||.+..... .+....+.+||.+..
T Consensus 236 -----~~~~~~~~~~gH~~~~~~~--~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 236 -----NGEIVLLNRTGHNLMIDQR--EAVGFHFDLFLDELN 269 (272)
T ss_dssp -----TEEEEEESSCCSSHHHHTH--HHHHHHHHHHHHHHH
T ss_pred -----CCeEEEecCCCCCchhcCH--HHHHHHHHHHHHHhh
Confidence 3588999999998754322 455667888988754
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=144.89 Aligned_cols=219 Identities=14% Similarity=0.058 Sum_probs=132.0
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++.....-+. +.+.|+||++||..+... .|... ...|++ +|.|+++|+||.|.... . ...
T Consensus 9 ~~g~~l~y~~~g~~----~~~~~~vvllHG~~~~~~--~~~~~-~~~L~~-~~~vi~~D~~G~G~S~~---~-----~~~ 72 (266)
T 2xua_A 9 VNGTELHYRIDGER----HGNAPWIVLSNSLGTDLS--MWAPQ-VAALSK-HFRVLRYDTRGHGHSEA---P-----KGP 72 (266)
T ss_dssp CSSSEEEEEEESCS----SSCCCEEEEECCTTCCGG--GGGGG-HHHHHT-TSEEEEECCTTSTTSCC---C-----SSC
T ss_pred ECCEEEEEEEcCCc----cCCCCeEEEecCccCCHH--HHHHH-HHHHhc-CeEEEEecCCCCCCCCC---C-----CCC
Confidence 47777776654331 112588999999655443 34433 455665 79999999999664321 1 123
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhc------ccc----c--c-cc
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML------RFN----K--F-TI 613 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~------~~~----~--~-~~ 613 (734)
.+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+..... ... . . ..
T Consensus 73 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T 2xua_A 73 YTIEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHAL 150 (266)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHH
Confidence 4566666666665554 234579999999999999999999999999999887643210 000 0 0 00
Q ss_pred CcccccccCCC----CCHH---------------H----HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHH
Q psy4818 614 AYYSESEFGSP----NNKT---------------H----FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670 (734)
Q Consensus 614 ~~~~~~~~g~~----~~~~---------------~----~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~ 670 (734)
.......+..+ ..++ . +..+........+.. +++| +|+++|++|..+++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lvi~G~~D~~~~~~~~ 225 (266)
T 2xua_A 151 ADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPG----IKVP-ALVISGTHDLAATPAQG 225 (266)
T ss_dssp HHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGG----CCSC-EEEEEETTCSSSCHHHH
T ss_pred HHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhcc----CCCC-EEEEEcCCCCcCCHHHH
Confidence 00000011000 0010 0 011122222223333 6777 99999999999999888
Q ss_pred HHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 671 YKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 671 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
.++.+.+.. .++++++ +||....... .+..+.+.+||.
T Consensus 226 ~~~~~~~~~-----------~~~~~~~-~gH~~~~e~p--~~~~~~i~~fl~ 263 (266)
T 2xua_A 226 RELAQAIAG-----------ARYVELD-ASHISNIERA--DAFTKTVVDFLT 263 (266)
T ss_dssp HHHHHHSTT-----------CEEEEES-CCSSHHHHTH--HHHHHHHHHHHT
T ss_pred HHHHHhCCC-----------CEEEEec-CCCCchhcCH--HHHHHHHHHHHH
Confidence 777665543 3788899 9998653322 355566777875
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-16 Score=168.46 Aligned_cols=218 Identities=18% Similarity=0.105 Sum_probs=138.1
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCC---cCCccccHHHHHHHHhcCeEEEEEeccc-CCCCCchhhhccccccCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGV---SVLPTFSISRCMFLRHFNGIYAIPNIRG-GGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG-~~~~g~~~~~~~~~~~~~ 546 (734)
.+.+.++.|+.. .++.|+||++|||... .....+.. ..++.+.|++|+.+|||. ..+|+..-... ....+.
T Consensus 82 cL~l~v~~P~~~--~~~~PviV~iHGGg~~~g~~~~~~~~~--~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~~~n 156 (489)
T 1qe3_A 82 CLYVNVFAPDTP--SQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAYSDN 156 (489)
T ss_dssp CCEEEEEEECSS--CCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTSCSC
T ss_pred CCEEEEEeCCCC--CCCCCEEEEECCCccccCCCCCcccCH--HHHHhcCCEEEEecCccCcccccCcccccc-ccCCCC
Confidence 467778888752 3458999999998632 22222332 233343359999999994 32343210000 012233
Q ss_pred CchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcchhcccccc-ccCcccccc
Q psy4818 547 NCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGALDMLRFNKF-TIAYYSESE 620 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~d~~~~~~~-~~~~~~~~~ 620 (734)
..+.|+.++++|+.++. ..||+||.|+|+|+||++++.++... +++|+++|+.+|..++...... .....+...
T Consensus 157 ~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~ 236 (489)
T 1qe3_A 157 LGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQV 236 (489)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 45789999999998752 36999999999999999999988753 5799999999998744322110 000111112
Q ss_pred cCCCC-CHHH------HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEE
Q psy4818 621 FGSPN-NKTH------FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLL 693 (734)
Q Consensus 621 ~g~~~-~~~~------~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 693 (734)
.|.+. ..+. -+.+...+++.+... ...| .+++++..|.+|.+.++.+++++++.. ++|+.+
T Consensus 237 ~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~----~~~~-~~~~~p~~D~~~~~~~~~~~~~~~~~~-------~vp~~~ 304 (489)
T 1qe3_A 237 LGINESQLDRLHTVAAEDLLKAADQLRIAEK----ENIF-QLFFQPALDPKTLPEEPEKSIAEGAAS-------GIPLLI 304 (489)
T ss_dssp HTCCTTCGGGGGTSCHHHHHHHHHHHHTSTT----CCTT-SCSSCCBCBTTTBCSCHHHHHHTTTTT-------TCCEEE
T ss_pred cCCCHHHHHHHHcCCHHHHHHHHHHhhhccc----cccC-CccceEeECCeecCcCHHHHHhcCCCC-------CCCEEE
Confidence 34331 1110 111222223221111 2223 678899999999999999998887766 899999
Q ss_pred EEeCCCCCCCCC
Q psy4818 694 RVEQDAGHGQGT 705 (734)
Q Consensus 694 ~~~~~~gH~~~~ 705 (734)
-.++++||.+..
T Consensus 305 g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 305 GTTRDEGYLFFT 316 (489)
T ss_dssp EEETTGGGGTCC
T ss_pred eeecchhHhhcc
Confidence 999999998864
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-15 Score=150.58 Aligned_cols=233 Identities=13% Similarity=0.081 Sum_probs=133.4
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
++..++..+| ++.... . .++.|+||++||..+... .|......++. +||.|+++|+||.|......
T Consensus 4 ~~~~~~~~~~-~~~~~~---~----~~~~~~vv~lHG~~~~~~--~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~--- 69 (279)
T 4g9e_A 4 NYHELETSHG-RIAVRE---S----EGEGAPLLMIHGNSSSGA--IFAPQLEGEIG-KKWRVIAPDLPGHGKSTDAI--- 69 (279)
T ss_dssp EEEEEEETTE-EEEEEE---C----CCCEEEEEEECCTTCCGG--GGHHHHHSHHH-HHEEEEEECCTTSTTSCCCS---
T ss_pred EEEEEEcCCc-eEEEEe---c----CCCCCeEEEECCCCCchh--HHHHHHhHHHh-cCCeEEeecCCCCCCCCCCC---
Confidence 4455666555 343321 1 245688999999866543 34443333355 59999999999966543210
Q ss_pred cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc----ccc---
Q psy4818 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN----KFT--- 612 (734)
Q Consensus 540 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~----~~~--- 612 (734)
.......++++.+.+..+++. .+.+++.++|||+||++++.++.++|++.+.+++..|........ ...
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
T 4g9e_A 70 --DPDRSYSMEGYADAMTEVMQQ--LGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDMA 145 (279)
T ss_dssp --CHHHHSSHHHHHHHHHHHHHH--HTCCCCEEEEETHHHHHHHHHTTTCTTCCEEEEESCCCCCGGGHHHHBCCSTTGG
T ss_pred --CcccCCCHHHHHHHHHHHHHH--hCCCceEEEEECchHHHHHHHHhhCCcceeEEEecCCCCCCCccchhhccchhhh
Confidence 011223566776666666554 244589999999999999999999999555555555543221100 000
Q ss_pred --cCcc--------ccc-ccCCCCCHHHHHHHHhCCc------------------cCCCCCCCCCccCCcEEEEecCCCC
Q psy4818 613 --IAYY--------SES-EFGSPNNKTHFHNLLSYSP------------------LHNIKVPPNNTQYPATLVLTGDHDD 663 (734)
Q Consensus 613 --~~~~--------~~~-~~g~~~~~~~~~~~~~~sp------------------~~~~~~p~~~~~~P~~Li~~g~~D~ 663 (734)
.... +.. .+..+........+....+ ...+.. ++.| +|+++|++|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~l~i~g~~D~ 220 (279)
T 4g9e_A 146 LAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAE----AQLP-IAVVNGRDEP 220 (279)
T ss_dssp GGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHH----CCSC-EEEEEETTCS
T ss_pred hcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHh----cCCC-EEEEEcCCCc
Confidence 0000 000 0122222222111111111 001121 5666 9999999999
Q ss_pred CCCChHHHHHH-HHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 664 RVPPLHSYKFI-ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 664 ~v~~~~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
.|++..+.++. +.+. .+++++++++||....... .+....+.+||.+.-...
T Consensus 221 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~~~~~~ 273 (279)
T 4g9e_A 221 FVELDFVSKVKFGNLW-----------EGKTHVIDNAGHAPFREAP--AEFDAYLARFIRDCTQLE 273 (279)
T ss_dssp SBCHHHHTTCCCSSBG-----------GGSCEEETTCCSCHHHHSH--HHHHHHHHHHHHHHHSSC
T ss_pred ccchHHHHHHhhccCC-----------CCeEEEECCCCcchHHhCH--HHHHHHHHHHHHHhhhhh
Confidence 99988766655 3222 2367889999998643222 456667889998876543
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=145.12 Aligned_cols=203 Identities=15% Similarity=0.078 Sum_probs=120.1
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPK 568 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 568 (734)
|.||++||..+... .|.. ....|+++||.|+++|+||.|..... .....++++.+.+..+++. .+.+
T Consensus 24 ~pvvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~~~dl~~~l~~--l~~~ 90 (279)
T 1hkh_A 24 QPVVLIHGYPLDGH--SWER-QTRELLAQGYRVITYDRRGFGGSSKV--------NTGYDYDTFAADLHTVLET--LDLR 90 (279)
T ss_dssp EEEEEECCTTCCGG--GGHH-HHHHHHHTTEEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CcEEEEcCCCchhh--HHhh-hHHHHHhCCcEEEEeCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCCC
Confidence 45899999766543 3444 34566667999999999996654311 1223455555555544443 2346
Q ss_pred cEEEEEcChHHHHHHHHHhcCCC-ceeEEEEcCCcchhcccccc-ccC--c---------------cccc-----cc---
Q psy4818 569 YITIMGGSNGGLLVGACLNQRPE-LYGAALILVGALDMLRFNKF-TIA--Y---------------YSES-----EF--- 621 (734)
Q Consensus 569 ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~~~~~d~~~~~~~-~~~--~---------------~~~~-----~~--- 621 (734)
++.++|||+||.+++.++.++|+ +++++|+.+++......... ..+ . .+.. .+
T Consensus 91 ~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (279)
T 1hkh_A 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLD 170 (279)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHH
T ss_pred ceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhcc
Confidence 89999999999999999999998 99999988774321100000 000 0 0000 00
Q ss_pred ---CCCCCHHHHHHHH----hCCc--------------cCCCCCCCCCc---cCCcEEEEecCCCCCCCChHH-HHHHHH
Q psy4818 622 ---GSPNNKTHFHNLL----SYSP--------------LHNIKVPPNNT---QYPATLVLTGDHDDRVPPLHS-YKFIAT 676 (734)
Q Consensus 622 ---g~~~~~~~~~~~~----~~sp--------------~~~~~~p~~~~---~~P~~Li~~g~~D~~v~~~~~-~~~~~~ 676 (734)
+.....+....+. ..++ ...+.. + ++| +|+++|++|..+|+..+ ..+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~ 245 (279)
T 1hkh_A 171 ENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEA----VRAAGKP-TLILHGTKDNILPIDATARRFHQA 245 (279)
T ss_dssp HHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHH----HHHHCCC-EEEEEETTCSSSCTTTTHHHHHHH
T ss_pred cCCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHH----hccCCCC-EEEEEcCCCccCChHHHHHHHHHh
Confidence 1111111111100 0000 001111 4 667 99999999999999887 666554
Q ss_pred HHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 677 L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+.. .++++++++||...... ..+..+.+.+||.
T Consensus 246 ~~~-----------~~~~~i~~~gH~~~~e~--p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 246 VPE-----------ADYVEVEGAPHGLLWTH--ADEVNAALKTFLA 278 (279)
T ss_dssp CTT-----------SEEEEETTCCTTHHHHT--HHHHHHHHHHHHH
T ss_pred CCC-----------eeEEEeCCCCccchhcC--HHHHHHHHHHHhh
Confidence 432 37889999999874322 2355666777875
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=154.16 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=131.6
Q ss_pred CcEEEEecCCCCCcCCc-------cccHHHH--HHHHhcCeEEEEEeccc-CCCC-Cchhhhc--cc---cccCCCchhH
Q psy4818 488 NPVIIYGYGGYGVSVLP-------TFSISRC--MFLRHFNGIYAIPNIRG-GGEL-GEDWHNA--GR---LLKKQNCFDD 551 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~-------~~~~~~~--~~l~~~G~~v~~~~~rG-~~~~-g~~~~~~--~~---~~~~~~~~~D 551 (734)
.|+||++||..+..... .|..... ..|+++||.|+++|+|| .|+. +..-... +. .......++|
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQD 138 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHH
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHH
Confidence 68999999987665540 1332211 13545699999999999 3432 2110000 00 0011356788
Q ss_pred HHHHHHHHHHcCCCCCCcEE-EEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc----c-------c-c---ccc--
Q psy4818 552 FQAAAEYMINKKYTKPKYIT-IMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR----F-------N-K---FTI-- 613 (734)
Q Consensus 552 ~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~----~-------~-~---~~~-- 613 (734)
+.+.+..+++. .+.+++. |+|+|+||.+++.++.++|++++++|+.+|...... . . . +..
T Consensus 139 ~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (377)
T 2b61_A 139 IVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGD 216 (377)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGC
T ss_pred HHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCccccccchhHHHHHHHHHhcCccccccc
Confidence 88888877765 3456887 999999999999999999999999999888532110 0 0 0 000
Q ss_pred -----------------------C-cccccccCCC-----------CCHHHH---------------------HHHHhCC
Q psy4818 614 -----------------------A-YYSESEFGSP-----------NNKTHF---------------------HNLLSYS 637 (734)
Q Consensus 614 -----------------------~-~~~~~~~g~~-----------~~~~~~---------------------~~~~~~s 637 (734)
. ..+...+... ...+.+ ..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (377)
T 2b61_A 217 YYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYD 296 (377)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred hhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhhhhhhccccChhHHHHHHHHHhccc
Confidence 0 0000001000 000000 1111111
Q ss_pred c-------cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC-CCCCCCCCchHH
Q psy4818 638 P-------LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ-DAGHGQGTPLMK 709 (734)
Q Consensus 638 p-------~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~gH~~~~~~~~ 709 (734)
+ ...+.. +++| +||++|++|..+|+.+..+..+.+.+. ...+++++++ ++||.......
T Consensus 297 ~~~~~~~~~~~l~~----i~~P-vlii~G~~D~~~~~~~~~~~~~~l~~~-------~~~~~~~~i~~~~gH~~~~e~p- 363 (377)
T 2b61_A 297 PSLGYENVKEALSR----IKAR-YTLVSVTTDQLFKPIDLYKSKQLLEQS-------GVDLHFYEFPSDYGHDAFLVDY- 363 (377)
T ss_dssp TTTTSSCHHHHHTT----CCSE-EEEEEETTCSSSCHHHHHHHHHHHHHT-------TCEEEEEEECCTTGGGHHHHCH-
T ss_pred cccccchHHhhhhh----cCCC-EEEEecCCcccCCccchHHHHHHHHhc-------CCCceEEEeCCCCCchhhhcCH-
Confidence 1 111222 6677 999999999999997776777777766 4557899999 99998653322
Q ss_pred hHHHHHHHHHHHHH
Q psy4818 710 SIEEMTDIYVFLMK 723 (734)
Q Consensus 710 ~~~~~~~~~~fl~~ 723 (734)
.+....+.+||.+
T Consensus 364 -~~~~~~i~~fl~~ 376 (377)
T 2b61_A 364 -DQFEKRIRDGLAG 376 (377)
T ss_dssp -HHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhc
Confidence 3556667888864
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=146.44 Aligned_cols=208 Identities=13% Similarity=0.055 Sum_probs=124.8
Q ss_pred CcEEEEecCC-CCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 488 NPVIIYGYGG-YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 488 ~P~vv~~hGg-~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
.|.||++||. ++......|.......|++ +|.|+++|+||.|.... . ......++++.+.+..++++ .+
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~-~~~vi~~D~~G~G~S~~---~----~~~~~~~~~~a~dl~~~l~~--l~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDA-GYRVILKDSPGFNKSDA---V----VMDEQRGLVNARAVKGLMDA--LD 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHT-TCEEEEECCTTSTTSCC---C----CCSSCHHHHHHHHHHHHHHH--TT
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhc-cCEEEEECCCCCCCCCC---C----CCcCcCHHHHHHHHHHHHHH--hC
Confidence 4789999997 3333223344333155665 69999999999664321 1 11134567777666666554 34
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc-c--c---------cccCcc------ccccc-CCC--C
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF-N--K---------FTIAYY------SESEF-GSP--N 625 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~-~--~---------~~~~~~------~~~~~-g~~--~ 625 (734)
.+++.|+|||+||.+++.++.++|++++++|+..|....... . . ...... +...+ ..+ .
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLI 182 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGC
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccC
Confidence 468999999999999999999999999999988775421100 0 0 000000 00000 011 0
Q ss_pred CHHH--------------HHHHHh---------CCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 626 NKTH--------------FHNLLS---------YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 626 ~~~~--------------~~~~~~---------~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
..+. ...+.. ......+.. +++| +||++|++|..+|+..+.++.+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~---- 253 (286)
T 2puj_A 183 TEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE----IKAK-TFITWGRDDRFVPLDHGLKLLWNID---- 253 (286)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGG----CCSC-EEEEEETTCSSSCTHHHHHHHHHSS----
T ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhh----cCCC-EEEEEECCCCccCHHHHHHHHHHCC----
Confidence 0110 011100 111122332 6777 9999999999999988877766553
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
..++++++++||....... .+....+.+||.+
T Consensus 254 -------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 285 (286)
T 2puj_A 254 -------DARLHVFSKCGAWAQWEHA--DEFNRLVIDFLRH 285 (286)
T ss_dssp -------SEEEEEESSCCSCHHHHTH--HHHHHHHHHHHHH
T ss_pred -------CCeEEEeCCCCCCccccCH--HHHHHHHHHHHhc
Confidence 2478899999997643222 3556667788864
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.8e-13 Score=153.10 Aligned_cols=260 Identities=11% Similarity=0.061 Sum_probs=166.0
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC---------
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG--------- 164 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g--------- 164 (734)
..++|||.+++|...+++.....||+++..+++...++... ..+.+++|||||+.|+|+....+
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 45668999999999988777778999987766644332211 11457999999999999987654
Q ss_pred --CceEEEEEEECCCCCcccc---cc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCC---
Q psy4818 165 --SDWNTLHIKDVDTGKDYPE---VL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGT--- 234 (734)
Q Consensus 165 --~~~~~l~v~dl~~g~~~~~---~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t--- 234 (734)
....+||++++.+++.... .. ......++.|||||++|++...... .....||++++.+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----------~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC-----------DPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS-----------SSCCEEEEEEGGGSSS
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC-----------CCccEEEEEECccccc
Confidence 2246799999998863211 11 1112357899999999999886331 1145899999976
Q ss_pred ---CCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc-eEE-E
Q psy4818 235 ---EQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH-HHE-I 309 (734)
Q Consensus 235 ---~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~-~~~-~ 309 (734)
+......+.... +. . ...|+|||++|+|..+.......|+++|++++.. ..++.++..... ... +
T Consensus 272 ~~~~~~~~~~l~~~~-~~-~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~------~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 272 GITGILKWVKLIDNF-EG-E--YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE------SKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp SSCSSCCCEEEECSS-SS-C--EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG------GGCEEEECCCSSCEEEEE
T ss_pred ccCCccceEEeeCCC-Cc-E--EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc------ccceeccCCCCCCeEEEE
Confidence 422233333322 22 1 2368999999999887654457899999987310 124556654332 222 2
Q ss_pred -EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCC-ceeEEEEECCCC
Q psy4818 310 -IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNV-RSVMDLHDLNTG 386 (734)
Q Consensus 310 -~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~~~l~~~dl~~g 386 (734)
|+ +++.+++....++ ..+|+++++.+++. ...+..+ ...+..+.+. +++.+++.+.... ...++++|+.+|
T Consensus 342 ~~~-~~~~lv~~~~~~g-~~~l~~~~~~~g~~--~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 342 ACV-RSNFLVLCYLHDV-KNTLQLHDLATGAL--LKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEE-TTTEEEEEEEETT-EEEEEEEETTTCCE--EEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEE-cCCEEEEEEEECC-EEEEEEEECCCCCE--EEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 55 4677777766544 45799999855431 2333322 2334444333 3456777765443 458999999877
Q ss_pred c
Q psy4818 387 K 387 (734)
Q Consensus 387 ~ 387 (734)
+
T Consensus 416 ~ 416 (710)
T 2xdw_A 416 E 416 (710)
T ss_dssp S
T ss_pred c
Confidence 7
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=155.17 Aligned_cols=240 Identities=8% Similarity=-0.058 Sum_probs=151.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+..+++||||++|||+...+|. ..||. +++|+..+.+... .....++|||| +++|++.... ..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~--~~lw~--~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~----------g~ 87 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGS--VNAYL--YDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSK----------GA 87 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTE--EEEEE--EETTEEEECCSSCCSEECEECTTCS--EEEEEEECST----------TS
T ss_pred hheeecCCCCCeEEEEEccCCc--eeEEE--EcCCCcEeeecccccccccccCCCC--eEEEEeccCC----------CC
Confidence 6788999999999999876553 44554 5677765544433 23468999999 6788775310 12
Q ss_pred CCcEEEEEEC--CCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 223 MGQKIYYHVL--GTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 223 ~~~~l~~~~l--~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
...+||.+++ .+... .+.. .. . . ...+|||||+.+++.+... ..+.+||++++ ....+.
T Consensus 88 ~~~~l~~~~~~~~g~~~---~l~~-~~-~-~-~~~~~s~dg~~~~~~s~~~---~~~~l~d~~~g---------~~~~l~ 148 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQ---RLEA-VK-P-M-RILSGVDTGEAVVFTGATE---DRVALYALDGG---------GLRELA 148 (582)
T ss_dssp CCEEEEEEETTSTTCCE---ECTT-SC-S-B-EEEEEEECSSCEEEEEECS---SCEEEEEEETT---------EEEEEE
T ss_pred cceEEEEEeccCCCccc---cccC-CC-C-c-eeeeeCCCCCeEEEEecCC---CCceEEEccCC---------cEEEee
Confidence 2347888888 43321 1111 11 1 2 2469999999988876543 23447788773 223343
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
.... ....|||||+.|++.++..+....|+++|+++++ ++.++.+. .. .....+..+++.++....++..+|++
T Consensus 149 ~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~-~~-~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 149 RLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---LRVFDSGE-GS-FSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp EESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---CEEECCSS-CE-EEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred cCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---ceEeecCC-Cc-cccceECCCCCEEEEccCCCeeEEEE
Confidence 3222 2224999999999888765554679999998876 46665443 33 34444544455444666666679999
Q ss_pred EECCCCceeeeeCCCCceEEeec--------cCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHIS--------GRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~--------~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
||+++|+.. .++...+.+..+. ++||+ .++++.+... .+.++++
T Consensus 223 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g---~~~l~~~ 274 (582)
T 3o4h_A 223 VDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG---RSAVFID 274 (582)
T ss_dssp ECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT---EEEEEET
T ss_pred EcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC---cEEEEEE
Confidence 999877764 5544344444455 88999 7777665433 4566665
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=157.32 Aligned_cols=139 Identities=11% Similarity=0.021 Sum_probs=86.5
Q ss_pred EEEcCCCcEEeEEEEEeccccC--CCCCcEEEEecCCCCCcCCcc-ccHHHH--HHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALR--NRRNPVIIYGYGGYGVSVLPT-FSISRC--MFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~--~~~~P~vv~~hGg~~~~~~~~-~~~~~~--~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
.+...+|..+.+.-+.-..... ....|+||++||..+...... |..... ..|.+.||.|+++|+||++ +|..-.
T Consensus 82 ~~~~~~g~~~~g~~l~y~~~G~~~~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~-~G~S~~ 160 (444)
T 2vat_A 82 LFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGP 160 (444)
T ss_dssp EEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSST
T ss_pred CeecCCCCEecceeEEEEEecCCCCCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCC-CCCCCC
Confidence 3445566666553332221111 123589999999877665411 332211 1353569999999999952 222111
Q ss_pred hc-----cc-----cccCCCchhHHHHHHHHHHHcCCCCCCc-EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcch
Q psy4818 538 NA-----GR-----LLKKQNCFDDFQAAAEYMINKKYTKPKY-ITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604 (734)
Q Consensus 538 ~~-----~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d 604 (734)
.. +. .......++|+.+.+..+++. ...++ ++++|||+||++++.++.++|++++++|+.++...
T Consensus 161 ~~~~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 161 CSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp TSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred CCCCcccccccccccccccccHHHHHHHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence 00 00 001134677887777776665 33457 99999999999999999999999999999887643
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=146.75 Aligned_cols=227 Identities=16% Similarity=0.126 Sum_probs=131.2
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCC-CCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY-GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
.+|.++.... . +..|.||++||.. +......|... ...|++ +|.|+++|+||.|... . ...
T Consensus 23 ~~g~~l~y~~---~-----g~g~~vvllHG~~~~~~~~~~~~~~-~~~L~~-~~~vi~~Dl~G~G~S~----~----~~~ 84 (296)
T 1j1i_A 23 AGGVETRYLE---A-----GKGQPVILIHGGGAGAESEGNWRNV-IPILAR-HYRVIAMDMLGFGKTA----K----PDI 84 (296)
T ss_dssp ETTEEEEEEE---E-----CCSSEEEEECCCSTTCCHHHHHTTT-HHHHTT-TSEEEEECCTTSTTSC----C----CSS
T ss_pred ECCEEEEEEe---c-----CCCCeEEEECCCCCCcchHHHHHHH-HHHHhh-cCEEEEECCCCCCCCC----C----CCC
Confidence 3777665432 1 2246799999963 32222234332 355665 6999999999965432 1 111
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc-cc----cCcc----
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK-FT----IAYY---- 616 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-~~----~~~~---- 616 (734)
..+++++.+.+..+++.-.+ .+++.|+|+|+||.+++.++.++|++++++|+..|......... .. ....
T Consensus 85 ~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (296)
T 1j1i_A 85 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 163 (296)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHH
Confidence 24566666666555554222 16899999999999999999999999999998877542110000 00 0000
Q ss_pred --cccc-cCCCC--CHHH----------------HHHHH-h-------CCccCCCCCCCCCccCCcEEEEecCCCCCCCC
Q psy4818 617 --SESE-FGSPN--NKTH----------------FHNLL-S-------YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP 667 (734)
Q Consensus 617 --~~~~-~g~~~--~~~~----------------~~~~~-~-------~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~ 667 (734)
.... ...+. ..+. +..+. . ......+.. +++| +||++|++|..+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~Lii~G~~D~~~~~ 238 (296)
T 1j1i_A 164 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRK----VQVP-TLVVQGKDDKVVPV 238 (296)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTT----CCSC-EEEEEETTCSSSCH
T ss_pred HHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhc----CCCC-EEEEEECCCcccCH
Confidence 0000 01111 1110 00000 0 000011222 6777 99999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCC
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYY 730 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 730 (734)
..+.++.+.+. ..++++++++||....... .+....+.+||.++++...+
T Consensus 239 ~~~~~~~~~~~-----------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~~~~~~~ 288 (296)
T 1j1i_A 239 ETAYKFLDLID-----------DSWGYIIPHCGHWAMIEHP--EDFANATLSFLSLRVDITPA 288 (296)
T ss_dssp HHHHHHHHHCT-----------TEEEEEESSCCSCHHHHSH--HHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHCC-----------CCEEEEECCCCCCchhcCH--HHHHHHHHHHHhccCCcCch
Confidence 88877766543 3478899999998643222 35666789999999877654
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=147.03 Aligned_cols=223 Identities=15% Similarity=0.088 Sum_probs=128.7
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCC-CCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccccc
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~ 544 (734)
..+|.++..... + +...|+||++||. ++......|... ...|++ +|.|+++|+||.|.... .. .
T Consensus 13 ~~~g~~l~y~~~---g---~~g~p~vvllHG~~~~~~~~~~~~~~-~~~L~~-~~~vi~~D~~G~G~S~~---~~----~ 77 (285)
T 1c4x_A 13 PSGTLASHALVA---G---DPQSPAVVLLHGAGPGAHAASNWRPI-IPDLAE-NFFVVAPDLIGFGQSEY---PE----T 77 (285)
T ss_dssp CCTTSCEEEEEE---S---CTTSCEEEEECCCSTTCCHHHHHGGG-HHHHHT-TSEEEEECCTTSTTSCC---CS----S
T ss_pred EECCEEEEEEec---C---CCCCCEEEEEeCCCCCCcchhhHHHH-HHHHhh-CcEEEEecCCCCCCCCC---CC----C
Confidence 346766654432 1 0234779999996 333322334443 355665 69999999999664321 11 1
Q ss_pred CCCchhHH----HHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc--------cccc
Q psy4818 545 KQNCFDDF----QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF--------NKFT 612 (734)
Q Consensus 545 ~~~~~~D~----~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~--------~~~~ 612 (734)
....++++ ...+..+++. ...+++.++|||+||.+++.++.++|++++++|+.+|....... ....
T Consensus 78 ~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 155 (285)
T 1c4x_A 78 YPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFY 155 (285)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGG
T ss_pred cccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHh
Confidence 12345565 5555544443 23468999999999999999999999999999988875421100 0000
Q ss_pred cCcc------ccccc-CCCC-C---HHH-------------HHHHHh-----CC-------ccCCCCCCCCCccCCcEEE
Q psy4818 613 IAYY------SESEF-GSPN-N---KTH-------------FHNLLS-----YS-------PLHNIKVPPNNTQYPATLV 656 (734)
Q Consensus 613 ~~~~------~~~~~-g~~~-~---~~~-------------~~~~~~-----~s-------p~~~~~~p~~~~~~P~~Li 656 (734)
.... +...+ ..+. . .+. ...+.. .. ....+.. ++.| +|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~li 230 (285)
T 1c4x_A 156 ADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGR----LPHD-VLV 230 (285)
T ss_dssp GSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTT----CCSC-EEE
T ss_pred ccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhcc----CCCC-EEE
Confidence 0000 00000 1111 0 010 010100 00 0011222 6777 999
Q ss_pred EecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 657 ~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
++|++|..+|+..+.++++.+. ..++++++++||....... .+..+.+.+||.+
T Consensus 231 i~G~~D~~~p~~~~~~~~~~~~-----------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 231 FHGRQDRIVPLDTSLYLTKHLK-----------HAELVVLDRCGHWAQLERW--DAMGPMLMEHFRA 284 (285)
T ss_dssp EEETTCSSSCTHHHHHHHHHCS-----------SEEEEEESSCCSCHHHHSH--HHHHHHHHHHHHC
T ss_pred EEeCCCeeeCHHHHHHHHHhCC-----------CceEEEeCCCCcchhhcCH--HHHHHHHHHHHhc
Confidence 9999999999988877766543 3588999999998643222 3555667788753
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=142.12 Aligned_cols=124 Identities=16% Similarity=0.068 Sum_probs=83.7
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcc
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAG 540 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~ 540 (734)
...++..+|.++.....-+ ...|.||++||+++......+ ..++..+||.|+++|+||.|... ..
T Consensus 13 ~~~~~~~~g~~l~y~~~G~------~~g~pvvllHG~~~~~~~~~~----~~~~~~~~~~vi~~D~~G~G~S~---~~-- 77 (313)
T 1azw_A 13 QGSLKVDDRHTLYFEQCGN------PHGKPVVMLHGGPGGGCNDKM----RRFHDPAKYRIVLFDQRGSGRST---PH-- 77 (313)
T ss_dssp EEEEECSSSCEEEEEEEEC------TTSEEEEEECSTTTTCCCGGG----GGGSCTTTEEEEEECCTTSTTSB---ST--
T ss_pred cceEEcCCCCEEEEEecCC------CCCCeEEEECCCCCccccHHH----HHhcCcCcceEEEECCCCCcCCC---CC--
Confidence 3445566888776544322 123568999998765432222 23343469999999999965432 11
Q ss_pred ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 541 RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 541 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.......++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 78 -~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 78 -ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp -TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -cccccccHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 111234567777766666665 23457999999999999999999999999999987664
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=131.71 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=117.5
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
++.|.||++||..+.... .|...+...+. .++ .++.+|.+ ...++++.+.+..+++. .
T Consensus 15 g~~~~vv~~HG~~~~~~~-~~~~~~~~~~~-~~~---~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~ 72 (191)
T 3bdv_A 15 SQQLTMVLVPGLRDSDDE-HWQSHWERRFP-HWQ---RIRQREWY---------------QADLDRWVLAIRRELSV--C 72 (191)
T ss_dssp HTTCEEEEECCTTCCCTT-SHHHHHHHHCT-TSE---ECCCSCCS---------------SCCHHHHHHHHHHHHHT--C
T ss_pred CCCceEEEECCCCCCchh-hHHHHHHHhcC-CeE---EEeccCCC---------------CcCHHHHHHHHHHHHHh--c
Confidence 456899999998755422 34333333333 243 44666621 23466777777776665 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCC
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 645 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p 645 (734)
+ +++.++|+|+||.+++.++.++|++++++|+.+|........ +.. .....
T Consensus 73 ~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~--------------~~~-------------~~~~~- 123 (191)
T 3bdv_A 73 T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI--------------DDR-------------IQASP- 123 (191)
T ss_dssp S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC--------------TTT-------------SCSSC-
T ss_pred C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC--------------ccc-------------ccccc-
Confidence 3 789999999999999999999999999999999977543211 000 12222
Q ss_pred CCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-HhHHHHHHHHHHHHHH
Q psy4818 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-KSIEEMTDIYVFLMKS 724 (734)
Q Consensus 646 ~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~ 724 (734)
++.| +|+++|++|..||+.++.++++.+ .. ++++++++||....... ..-+....+.+||.+.
T Consensus 124 ---~~~P-~lii~g~~D~~~~~~~~~~~~~~~-~~-----------~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 187 (191)
T 3bdv_A 124 ---LSVP-TLTFASHNDPLMSFTRAQYWAQAW-DS-----------ELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEIL 187 (191)
T ss_dssp ---CSSC-EEEEECSSBTTBCHHHHHHHHHHH-TC-----------EEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTT
T ss_pred ---CCCC-EEEEecCCCCcCCHHHHHHHHHhc-CC-----------cEEEeCCCCcccccccchhHHHHHHHHHHHHHHh
Confidence 5566 999999999999999988888776 22 68899999998754210 1124446678888765
Q ss_pred c
Q psy4818 725 L 725 (734)
Q Consensus 725 l 725 (734)
.
T Consensus 188 ~ 188 (191)
T 3bdv_A 188 I 188 (191)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-13 Score=151.66 Aligned_cols=262 Identities=10% Similarity=0.086 Sum_probs=172.8
Q ss_pred CcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC--------Cc
Q psy4818 95 APQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG--------SD 166 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g--------~~ 166 (734)
.++|||.+++|.....+.+...|++++..+|+.....-.+ ....+++|| ||+.|+|+..... ..
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-------~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD-------VKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE-------EESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC-------ceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 4568999999999988888889999998777643321111 113578999 9999999987642 33
Q ss_pred eEEEEEEECCCCCccc----cccc--ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCe
Q psy4818 167 WNTLHIKDVDTGKDYP----EVLK--NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDI 240 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~----~~~~--~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~ 240 (734)
..+||++++.++.... .... ...+.++.|||||++|++..... ....+||++++.++..+-+
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~------------~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS------------TSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS------------SSCCEEEEEETTSTTCCCE
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC------------CCCcEEEEEECCCCCCceE
Confidence 4689999998875311 1111 12235789999999999987633 1235899999987654434
Q ss_pred eEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEE
Q psy4818 241 PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320 (734)
Q Consensus 241 ~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~ 320 (734)
.+....+ .. .. .|++||++|+|..+.......|+.+|++++.. ..|+.++....... .|++++++|++.
T Consensus 275 ~l~~~~~-~~--~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------~~~~~l~~~~~~~~-~~s~~g~~lv~~ 343 (693)
T 3iuj_A 275 TVQGDLD-AD--VS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------AHWRDLIPERQQVL-TVHSGSGYLFAE 343 (693)
T ss_dssp EEECSSS-SC--EE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG------GGCEEEECCCSSCE-EEEEETTEEEEE
T ss_pred EEeCCCC-ce--EE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc------cccEEEecCCCCEE-EEEEECCEEEEE
Confidence 4433322 21 12 28999999999887654457999999987321 23556665554445 799999999988
Q ss_pred eCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEe-CCceeEEEEECCCCceeeeeC
Q psy4818 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQ-NVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 321 s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~l~~~dl~~g~~~~~l~ 393 (734)
..+++ ..+|++++++++. .+.+..+. ...+..+.. .+++.+++.+.. .....++.+|+++|+. +.+.
T Consensus 344 ~~~~g-~~~l~~~d~~g~~---~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~-~~l~ 412 (693)
T 3iuj_A 344 YMVDA-TARVEQFDYEGKR---VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI-SLYR 412 (693)
T ss_dssp EEETT-EEEEEEECTTSCE---EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE-EEEE
T ss_pred EEECC-eeEEEEEECCCCe---eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE-EEEE
Confidence 77654 4579999998654 23333222 223333322 244567776654 3446899999977764 4443
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-14 Score=145.55 Aligned_cols=226 Identities=17% Similarity=0.081 Sum_probs=144.0
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccC-CCCCcEEEEecCCCCCcCCccccHHHHHHHHh------cCeEEEEEecccC
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALR-NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH------FNGIYAIPNIRGG 529 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~-~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~------~G~~v~~~~~rG~ 529 (734)
..+.+++.|. -|....++++.|+++.+ .+++|+|++.||..... . .......+.. .+++||.+++..
T Consensus 11 ~v~~~~~~S~~l~~~r~~~VylP~~y~~~~~~yPVlylldG~~~f~---~-~~~~~~~l~~~~~~~~~~~IvV~i~~~~- 85 (331)
T 3gff_A 11 EYQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQFD---H-MASLLQFLSQGTMPQIPKVIIVGIHNTN- 85 (331)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTGGGSCCCEEEEEESSHHHHHH---H-HHHHHHHHTCSSSCSSCCCEEEEECCSS-
T ss_pred eEEEEEEEecCCCCeEEEEEEeCCCCCCCCCCccEEEEecChhhhH---H-HHHHHHHHHhhhhcCCCCEEEEEECCCC-
Confidence 4566677775 47789999999999865 67899999999952111 0 1123344442 267888887511
Q ss_pred CCCCchhhhc-------c------cc-ccCCCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCce
Q psy4818 530 GELGEDWHNA-------G------RL-LKKQNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELY 593 (734)
Q Consensus 530 ~~~g~~~~~~-------~------~~-~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~ 593 (734)
...++... | .. ..+...+.+++ ..+.++.++..+++.| +|+|+|+||++++.++.++|++|
T Consensus 86 --R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F 162 (331)
T 3gff_A 86 --RMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLF 162 (331)
T ss_dssp --HHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSC
T ss_pred --cccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhh
Confidence 11111100 0 00 11223455554 3566666665567665 89999999999999999999999
Q ss_pred eEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCC-------CCC
Q psy4818 594 GAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDD-------RVP 666 (734)
Q Consensus 594 ~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~-------~v~ 666 (734)
+++++.+|.+.+. .. ...+.+... +..... ...| +++.+|+.|. +++
T Consensus 163 ~~~~~~S~~~w~~----------------~~---~~~~~~~~~--~~~~~~----~~~~-l~l~~G~~d~~~~~~~~~~~ 216 (331)
T 3gff_A 163 SAYLALDTSLWFD----------------SP---HYLTLLEER--VVKGDF----KQKQ-LFMAIANNPLSPGFGVSSYH 216 (331)
T ss_dssp SEEEEESCCTTTT----------------TT---HHHHHHHHH--HHHCCC----SSEE-EEEEECCCSEETTTEECCHH
T ss_pred heeeEeCchhcCC----------------hH---HHHHHHHHH--hhcccC----CCCe-EEEEeCCCCCCCccchHHHH
Confidence 9999999965321 11 111111110 000000 2233 9999999998 678
Q ss_pred ChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 667 PLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 667 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
..++.+++++|++. ...|.++.+.++|+++|+... .....+.+.||.....
T Consensus 217 ~~~~~~l~~~Lk~~----~~~g~~~~~~~~pg~~H~sv~-----~~~~~~~l~~lf~~~~ 267 (331)
T 3gff_A 217 KDLNLAFADKLTKL----APKGLGFMAKYYPEETHQSVS-----HIGLYDGIRHLFKDFA 267 (331)
T ss_dssp HHHHHHHHHHHHHH----CCTTEEEEEEECTTCCTTTHH-----HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhc----cCCCceEEEEECCCCCccccH-----HHHHHHHHHHHHhhcC
Confidence 88899999999987 333678999999999998643 2334455666665443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=135.87 Aligned_cols=236 Identities=12% Similarity=0.056 Sum_probs=147.1
Q ss_pred EEEeeEEeCCCCcEEEEEEeCC----CCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKS----GSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~----g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
..+..+++ ||++|||+.... +....+||++|+++|+.... . ....+.|||||+.|+|...+..
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~--~~~~~~~SpDg~~la~~~~~~~------- 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--E--NATMPRISPDGKKIAFMRANEE------- 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--E--SCEEEEECTTSSEEEEEEEETT-------
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--c--cCCCeEECCCCCEEEEEEeccC-------
Confidence 34678888 999999987532 22357899999999875443 2 2368999999999999986431
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecC-----------------------CCC
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNN-----------------------TQG 274 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~-----------------------~~~ 274 (734)
....+||++++.++.. +.+...+ . ...+.|||||++|++..... ...
T Consensus 82 ----~~~~~l~~~~~~~g~~--~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 82 ----KKVSEIWVADLETLSS--KKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp ----TTEEEEEEEETTTTEE--EEEEEES---E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred ----CCcceEEEEECCCCce--EEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 1234799999887542 2333332 2 56799999999999987431 012
Q ss_pred ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCC-----C-CceEEEEecCCCCCCCceEeec
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNA-----P-KGKVVTINLNNPCEKNWKTLIP 348 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~-----~-~~~l~~~d~~~~~~~~~~~l~~ 348 (734)
..||++|+.++. ....+... ......|+||| ++|.++... . ..+|+.++ ++. ++.++.
T Consensus 152 ~~l~~~d~~~~~--------~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~ 215 (347)
T 2gop_A 152 TTFWIFDTESEE--------VIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK---EEKMFE 215 (347)
T ss_dssp EEEEEEETTTTE--------EEEEEEEE-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE---EEEEEE
T ss_pred ceEEEEECCCCe--------EEeeecCC-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc---eEEecc
Confidence 689999998732 11233332 22223499998 666665432 1 55799999 443 455554
Q ss_pred CCCCceeEEEEEeeCCEEEEEEEeC-----CceeEEEEECCCCceeeeeCCC-CceEEe-eccCcccceEEEEEecCCCC
Q psy4818 349 EDENRTLDVVAAVANNKLIVHYIQN-----VRSVMDLHDLNTGKRLHSFPLD-LGQITH-ISGRRKYNEVFYGFTSFLQP 421 (734)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~l~~~dl~~g~~~~~l~~~-~g~v~~-~~~~~d~~~l~~~~ss~~~P 421 (734)
+ . .+... .++++.+++..... ....|+++| +|+. +.+... .+.+.. +.++ ++ +++..+... -
T Consensus 216 ~--~-~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~ 284 (347)
T 2gop_A 216 K--V-SFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-S 284 (347)
T ss_dssp E--E-SEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE--EEEEEEETT-E
T ss_pred C--c-ceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc--EEEEEecCC-c
Confidence 4 2 22233 45656777766543 135899998 5665 444433 455654 6677 65 555544332 2
Q ss_pred ceEEEEe
Q psy4818 422 GTIYHCN 428 (734)
Q Consensus 422 ~~~~~~d 428 (734)
..+| ++
T Consensus 285 ~~l~-~~ 290 (347)
T 2gop_A 285 VNLY-IW 290 (347)
T ss_dssp EEEE-EE
T ss_pred EEEE-Ec
Confidence 3455 54
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-11 Score=125.98 Aligned_cols=265 Identities=11% Similarity=0.128 Sum_probs=173.8
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCC--------
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGS-------- 165 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~-------- 165 (734)
.....+|+|+||..... ...||+++..+...+.|.+- ...-++|+|++|.|+....+.
T Consensus 19 g~~~~~g~~iy~~n~~d---~~~ly~~~~dg~~~~~l~~~-----------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 19 GLFCESDGEVFFSNTND---NGRLYAMNIDGSNIHKLSND-----------TAMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp TCEEEETTEEEEEEGGG---TTEEEEEETTSCSCEEEEEE-----------EEEEEEECSSEEEEEEECC------CCSS
T ss_pred eEEEEeCCEEEEEeCCC---CceEEEEcCCCCCCEEccCC-----------ceeeEEEcCCEEEEEECCCCcccccceec
Confidence 34568999999986543 24699999877777777662 234568999999999876542
Q ss_pred -ceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe
Q psy4818 166 -DWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE 244 (734)
Q Consensus 166 -~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~ 244 (734)
....||.+++++++....... ....|+++|++|||+.... .....||++++++... ..|..
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~~----~~~~~s~~g~~Iy~~~~~~------------~~~~~Iy~~~~dGs~~--~~lt~ 146 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDPD----PCIYASLIGNYIYYLHYDT------------QTATSLYRIRIDGEEK--KKIKN 146 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEECS----CEEEEEEETTEEEEEEESS------------SSCEEEEEEETTSCCC--EEEES
T ss_pred cCCCeEEEEeCCCCcceEeecC----CccEEEEeCCEEEEEeecC------------CCCceEEEEECCCCCe--EEEeC
Confidence 247899999999875433222 3458999999999987211 1234899999987543 23433
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCC
Q psy4818 245 FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKN 324 (734)
Q Consensus 245 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 324 (734)
... ..++++|++|+|+.. ....||+++++++ ..+.++.+ ....++.|+|++|||....+
T Consensus 147 ~~~-------~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~---------~~~~l~~~--~~~~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 147 HYL-------FTCNTSDRYFYYNNP---KNGQLYRYDTASQ---------SEALFYDC--NCYKPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp SCC-------CCSEEETTEEEEECT---TTCCEEEEETTTT---------EEEEEECS--CEEEEEEEETTEEEEEEGGG
T ss_pred CCc-------eEeeEECCEEEEEeC---CCceEEEEECCCC---------CEEEEeCC--CccceeeecCCEEEEEEcCC
Confidence 211 356899999998754 3468999999873 12333332 12234669999999976543
Q ss_pred CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeecc
Q psy4818 325 APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 404 (734)
Q Consensus 325 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~ 404 (734)
+ .+|+++++++.. .+.|+. . .+.++. +.++.||++.... ...|+.+++ +|...++|... .+..+
T Consensus 206 ~--~~I~~~~ldG~~---~~~Lt~-~---~~~~~~-~~g~~Iy~~~~~~-~~~i~~~~~-DG~~r~~l~~~--~~~~i-- 269 (302)
T 3s25_A 206 D--NAIVHVNINNPN---PVVLTE-A---NIEHYN-VYGSLIFYQRGGD-NPALCVVKN-DGTGFKELAKG--EFCNI-- 269 (302)
T ss_dssp T--TEEEEECSSSCC---CEECSC-S---CEEEEE-EETTEEEEEECSS-SCEEEEEET-TSCCCEEEEES--CEEEE--
T ss_pred C--cEEEEEECCCCC---eEEEeC-C---CcceEE-ECCCEEEEEECCC-CcEEEEEEC-CCCccEEeeCC--ccceE--
Confidence 2 689999999876 244442 2 224444 3458888765443 378999999 67665666533 22233
Q ss_pred CcccceEEEEEecCCCCceEEEEeCC
Q psy4818 405 RRKYNEVFYGFTSFLQPGTIYHCNIP 430 (734)
Q Consensus 405 ~~d~~~l~~~~ss~~~P~~~~~~d~~ 430 (734)
+..++.++++- +.+. .+++.++.
T Consensus 270 ~i~~d~Iy~td--~~~~-~i~~~~~d 292 (302)
T 3s25_A 270 NVTSQYVYFTD--FVSN-KEYCTSTQ 292 (302)
T ss_dssp EECSSEEEEEE--TTTC-CEEEEESS
T ss_pred EEeCCEEEEEE--CCCC-eEEEEECC
Confidence 34566777653 3333 48888874
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=147.36 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=83.7
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++.....-+ ...|+||++||+.+.... |.. +...|+ +||.|+++|+||.|.... .....
T Consensus 18 ~g~~l~~~~~g~------~~~~~vl~lHG~~~~~~~--~~~-~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~~ 79 (299)
T 3g9x_A 18 LGERMHYVDVGP------RDGTPVLFLHGNPTSSYL--WRN-IIPHVA-PSHRCIAPDLIGMGKSDK--------PDLDY 79 (299)
T ss_dssp TTEEEEEEEESC------SSSCCEEEECCTTCCGGG--GTT-THHHHT-TTSCEEEECCTTSTTSCC--------CCCCC
T ss_pred CCeEEEEEecCC------CCCCEEEEECCCCccHHH--HHH-HHHHHc-cCCEEEeeCCCCCCCCCC--------CCCcc
Confidence 777776654422 235789999998765543 333 235566 499999999999654321 11245
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.++++.+.+..+++. .+.+++.++|||+||++++.++.++|++++++|+.++.
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 132 (299)
T 3g9x_A 80 FFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132 (299)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEEC
T ss_pred cHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCC
Confidence 677877777777765 35568999999999999999999999999999987743
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=141.27 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=123.0
Q ss_pred cEEEEecCCC-CCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 489 PVIIYGYGGY-GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 489 P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
|.||++||.. +......|.......|.+ +|.|+++|+||.|..... ......++++.+.+..+++. .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPGWGKSDSV-------VNSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hCC
Confidence 3899999963 222222344333256665 799999999996644311 11134577777776666665 344
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc-c-------------cCc----ccccc-cCCCC--C
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF-T-------------IAY----YSESE-FGSPN--N 626 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~-------------~~~----~~~~~-~g~~~--~ 626 (734)
+++.++|||+||.+++.++.++|++++++|+..|.......... . ... .+... +..+. .
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 68999999999999999999999999999988765421100000 0 000 00000 00110 0
Q ss_pred HHH--------------HHHHH-h--------CCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q psy4818 627 KTH--------------FHNLL-S--------YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683 (734)
Q Consensus 627 ~~~--------------~~~~~-~--------~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~ 683 (734)
.+. +..+. . ......+.. +++| +|+++|++|..+|+..+.++.+.+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~---- 257 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAE----IKAQ-TLIVWGRNDRFVPMDAGLRLLSGIAG---- 257 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGG----CCSC-EEEEEETTCSSSCTHHHHHHHHHSTT----
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhh----cCCC-eEEEeeCCCCccCHHHHHHHHhhCCC----
Confidence 111 11000 0 001112222 6777 99999999999999988877766543
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 684 LPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 684 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
.++++++++||....... .+..+.+.+||.
T Consensus 258 -------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 287 (289)
T 1u2e_A 258 -------SELHIFRDCGHWAQWEHA--DAFNQLVLNFLA 287 (289)
T ss_dssp -------CEEEEESSCCSCHHHHTH--HHHHHHHHHHHT
T ss_pred -------cEEEEeCCCCCchhhcCH--HHHHHHHHHHhc
Confidence 378889999998643222 344555677764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=157.86 Aligned_cols=278 Identities=10% Similarity=-0.019 Sum_probs=173.1
Q ss_pred CCcE-EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEE-
Q psy4818 94 SAPQ-RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH- 171 (734)
Q Consensus 94 ~~p~-~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~- 171 (734)
..++ |+|.+++|.. . ..+++.+..++....+.. .....+..++|| ||++|+|..+ ...||
T Consensus 301 ~~~S~pdG~~la~~~--~----~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~ 362 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS--R----GQAFIQDVSGTYVLKVPE------PLRIRYVRRGGD-TKVAFIHGTR-----EGDFLG 362 (1045)
T ss_dssp EEEEECGGGCEEEEE--T----TEEEEECTTSSBEEECSC------CSCEEEEEECSS-SEEEEEEEET-----TEEEEE
T ss_pred eeecCCCCCEEEEEE--c----CEEEEEcCCCCceEEccC------CCcceEEeeeEc-CCCeEEEEEC-----CCceEE
Confidence 3456 8888888876 1 246766655554333221 112357889999 9999999875 25899
Q ss_pred EEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCee
Q psy4818 172 IKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSL 251 (734)
Q Consensus 172 v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~ 251 (734)
++|+++++....+........++|||||+.|++...+ ..|+++++.++.. +.+... +...
T Consensus 363 ~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~----------------~~v~~~d~~tg~~--~~~~~~--~~~~ 422 (1045)
T 1k32_A 363 IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR----------------FEIMTVDLETGKP--TVIERS--REAM 422 (1045)
T ss_dssp EEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT----------------SEEEEEETTTCCE--EEEEEC--SSSC
T ss_pred EEECCCCCceEecCCccceeeeEECCCCCEEEEECCC----------------CeEEEEECCCCce--EEeccC--CCCC
Confidence 9999988754444222334689999999999988642 2799999987642 233322 2223
Q ss_pred EEEEEEecCCcEEEEEEecC------CCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCC
Q psy4818 252 GLHSEVTDCGRYLLVSTSNN------TQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKN 324 (734)
Q Consensus 252 ~~~~~~SpDG~~l~~~~~~~------~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~ 324 (734)
+..++|||||++|++..... .....|++||++++. ...+.......... |+|||+.|++.+++.
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---------IFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---------EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---------EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 45789999999999887643 223689999998731 23333333333333 999999999998754
Q ss_pred CC--------------CceEEEEecCCCCCC-----------------------CceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 325 AP--------------KGKVVTINLNNPCEK-----------------------NWKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 325 ~~--------------~~~l~~~d~~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
.. ..+++.+.+...... ....+..+ ...+..+.+..++.++
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~--~~~~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 494 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD--PGDYRMIIPLESSILI 571 (1045)
T ss_dssp CCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC--CBCEEEEEECSSEEEE
T ss_pred CCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC--CCChhheEEcCCCeEE
Confidence 21 123444443311100 01111111 1234445555545555
Q ss_pred EE-----------EEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VH-----------YIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~-----------~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+. ...+....|++||+.+++. +.+. ..+..+.+++|++.+++.... .+.++|+
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~---~~v~~~~~S~DG~~l~~~~~~-----~i~~~d~ 635 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVK---NNLTDLRLSADRKTVMVRKDD-----GKIYTFP 635 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EEEE---EEEEEEEECTTSCEEEEEETT-----SCEEEEE
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcE-EEee---cCcceEEECCCCCEEEEEcCC-----cEEEEeC
Confidence 53 1223346899999988875 4443 345677889999988866433 4788888
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.1e-12 Score=130.62 Aligned_cols=269 Identities=11% Similarity=0.100 Sum_probs=161.3
Q ss_pred EEeCCeEEEEEEcCC--CCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEE
Q psy4818 97 QRQENNYFYFHNKGL--QNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKD 174 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~d 174 (734)
.++|+++|.....+. .....+++.+..++.....+.... ...++.|||||++++++.... ..|+++|
T Consensus 49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~v~~~~~----~~v~~~d 117 (353)
T 3vgz_A 49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-------KPFGATINNTTQTLWFGNTVN----SAVTAID 117 (353)
T ss_dssp ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-------CCCSEEEETTTTEEEEEETTT----TEEEEEE
T ss_pred CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-------CcceEEECCCCCEEEEEecCC----CEEEEEe
Confidence 356677765553321 012456666655554443333211 135689999999887766533 3799999
Q ss_pred CCCCCccccccc-cc---------ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe
Q psy4818 175 VDTGKDYPEVLK-NV---------KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE 244 (734)
Q Consensus 175 l~~g~~~~~~~~-~~---------~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~ 244 (734)
+++++.+..... .. ....++|+|||+.|++..... ...|+++++.+... +..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------------~~~i~~~d~~~~~~--~~~~~ 181 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------------ESVIWVVDGGNIKL--KTAIQ 181 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------------SCEEEEEETTTTEE--EEEEC
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------------CceEEEEcCCCCce--EEEec
Confidence 999986432211 10 124689999999887776321 23799999876532 12222
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-c--ccc-eEE-EEEecCCeEEE
Q psy4818 245 FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-G--MDH-HHE-IIANNGPELIV 319 (734)
Q Consensus 245 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~--~~~-~~~-~~s~dg~~l~~ 319 (734)
... .....+.|+|||++|++... ...|+++|+.++. ....+.. . ... ... .|+|||+.+|+
T Consensus 182 ~~~--~~~~~~~~s~dg~~l~~~~~----~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 182 NTG--KMSTGLALDSEGKRLYTTNA----DGELITIDTADNK--------ILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp CCC--TTCCCCEEETTTTEEEEECT----TSEEEEEETTTTE--------EEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred CCC--CccceEEECCCCCEEEEEcC----CCeEEEEECCCCe--------EEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 111 12346799999999887532 3689999998731 1111111 1 111 112 39999998877
Q ss_pred EeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceE
Q psy4818 320 KTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQI 399 (734)
Q Consensus 320 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v 399 (734)
.... ...|+.+|+++++ ....++.... .......+++.+++....+ ..|.+||+.+++.+..+..+. ..
T Consensus 248 ~~~~---~~~v~~~d~~~~~---~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~-~~ 316 (353)
T 3vgz_A 248 TDSK---AAEVLVVDTRNGN---ILAKVAAPES--LAVLFNPARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDTPT-HP 316 (353)
T ss_dssp EESS---SSEEEEEETTTCC---EEEEEECSSC--CCEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEEECCS-EE
T ss_pred EeCC---CCEEEEEECCCCc---EEEEEEcCCC--ceEEECCCCCEEEEEECCC--CeEEEEECCCCeEEEEEecCC-CC
Confidence 6532 3569999998765 2333332212 1222234445566654333 579999998898777776543 45
Q ss_pred EeeccCcccceEEEEEec
Q psy4818 400 THISGRRKYNEVFYGFTS 417 (734)
Q Consensus 400 ~~~~~~~d~~~l~~~~ss 417 (734)
..+.++++++.++++..+
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 678888999888888766
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=151.14 Aligned_cols=251 Identities=12% Similarity=0.054 Sum_probs=159.8
Q ss_pred EeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-------cccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-------VKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 148 ~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-------~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.++|||++++|.....|.+...||+++..+|+....+..+ ....+++|||||+.|+|+....
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~----------- 142 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN----------- 142 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET-----------
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC-----------
Confidence 3459999999999988877789999998877643322111 1246899999999999998743
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCC---------CCceEEEEeCCCCCCCccc
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT---------QGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~i~~~d~~~~~~~~l~ 291 (734)
......|+++++.++........ +. . .+.+++|||||+.|++...+.. ...+||++++.++..
T Consensus 143 G~~~~~i~v~dl~tg~~~~~~~~--~~-~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~---- 214 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWSKVDVI--EG-G-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS---- 214 (695)
T ss_dssp TCSCCEEEEEETTTCCBCSSCCB--SC-C-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG----
T ss_pred CCceEEEEEEECCCCCCcCCccc--Cc-c-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch----
Confidence 12345899999988753200011 11 1 1146899999999999876543 136799999988321
Q ss_pred CCCCceeeeccc---cceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 292 GKFPLKTVIPGM---DHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 292 ~~~~~~~l~~~~---~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
....+.... ..... .|||||++|++.++......+|+.++..++. ++.++.... .....+ +.+++ ++
T Consensus 215 ---~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~-~~~~~~-~~~g~-l~ 285 (695)
T 2bkl_A 215 ---KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVG-AKYEVH-AWKDR-FY 285 (695)
T ss_dssp ---GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSS-CCEEEE-EETTE-EE
T ss_pred ---hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCC-ceEEEE-ecCCc-EE
Confidence 111222211 11223 3999999999987654245679999876554 577776653 333333 35545 77
Q ss_pred EEEEeC-CceeEEEEECCCCce---eeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VHYIQN-VRSVMDLHDLNTGKR---LHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~~~~~-~~~~l~~~dl~~g~~---~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+....+ ....|+++|+++++. ...+... ...+.+++++ ++.+++++.... -.+++.+++
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg-~~~l~~~~~ 349 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDA-TSEVRVATL 349 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETT-EEEEEEEET
T ss_pred EEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECC-EEEEEEEeC
Confidence 666544 346899999976652 2333322 3445556655 456776665433 356888887
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=141.03 Aligned_cols=221 Identities=15% Similarity=0.102 Sum_probs=129.8
Q ss_pred CCC-cEEeEEEEEeccccCCCCCcEEEEecCC-CCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccccc
Q psy4818 467 KDG-TRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544 (734)
Q Consensus 467 ~dg-~~i~~~~~~p~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~ 544 (734)
.+| .++..... + +++.|.||++||. ++......|.... ..|++ .|.|+++|+||.|.... . ..
T Consensus 20 ~~g~~~l~y~~~---G---~g~~~~vvllHG~~pg~~~~~~w~~~~-~~L~~-~~~via~Dl~G~G~S~~---~----~~ 84 (291)
T 2wue_A 20 VDGPLKLHYHEA---G---VGNDQTVVLLHGGGPGAASWTNFSRNI-AVLAR-HFHVLAVDQPGYGHSDK---R----AE 84 (291)
T ss_dssp SSSEEEEEEEEE---C---TTCSSEEEEECCCCTTCCHHHHTTTTH-HHHTT-TSEEEEECCTTSTTSCC---C----SC
T ss_pred eCCcEEEEEEec---C---CCCCCcEEEECCCCCccchHHHHHHHH-HHHHh-cCEEEEECCCCCCCCCC---C----CC
Confidence 477 77765432 2 2344689999997 4333223344333 55665 69999999999664331 1 01
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc-c-----------cc-
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF-N-----------KF- 611 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~-~-----------~~- 611 (734)
....++++.+.+..++++ ...+++.|+|||+||.+++.++.++|++++++|+..|....... . ..
T Consensus 85 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
T 2wue_A 85 HGQFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFS 162 (291)
T ss_dssp CSSHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHh
Confidence 134566666665555554 23468999999999999999999999999999988875321100 0 00
Q ss_pred ccCc-----cccccc-CCCC--C-------------HHHHHHHHh----C-C-----cc--CCCCCCCCCccCCcEEEEe
Q psy4818 612 TIAY-----YSESEF-GSPN--N-------------KTHFHNLLS----Y-S-----PL--HNIKVPPNNTQYPATLVLT 658 (734)
Q Consensus 612 ~~~~-----~~~~~~-g~~~--~-------------~~~~~~~~~----~-s-----p~--~~~~~p~~~~~~P~~Li~~ 658 (734)
.... .+...+ ..+. . ++.+..+.. + . +. ..+.. +++| +||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lvi~ 237 (291)
T 2wue_A 163 VAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYR----LRQP-VLLIW 237 (291)
T ss_dssp HSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGG----CCSC-EEEEE
T ss_pred ccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhh----CCCC-eEEEe
Confidence 0000 000000 0110 0 111111110 0 0 11 22332 7778 99999
Q ss_pred cCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 659 GDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 659 g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
|++|..+|+..+.++++.+. ..++++++++||....... .+..+.+.+||.
T Consensus 238 G~~D~~~~~~~~~~~~~~~p-----------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 288 (291)
T 2wue_A 238 GREDRVNPLDGALVALKTIP-----------RAQLHVFGQCGHWVQVEKF--DEFNKLTIEFLG 288 (291)
T ss_dssp ETTCSSSCGGGGHHHHHHST-----------TEEEEEESSCCSCHHHHTH--HHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHCC-----------CCeEEEeCCCCCChhhhCH--HHHHHHHHHHHh
Confidence 99999999988877766543 2478899999997643222 344555667764
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=148.14 Aligned_cols=202 Identities=11% Similarity=0.102 Sum_probs=122.4
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|+||++||..+.... |. .++...||.|+++|+||.|... . .......++++.+.+..+++. .+.
T Consensus 81 ~~~vv~~hG~~~~~~~--~~----~~~~~lg~~Vi~~D~~G~G~S~---~----~~~~~~~~~~~a~dl~~~l~~--l~~ 145 (330)
T 3p2m_A 81 APRVIFLHGGGQNAHT--WD----TVIVGLGEPALAVDLPGHGHSA---W----REDGNYSPQLNSETLAPVLRE--LAP 145 (330)
T ss_dssp CCSEEEECCTTCCGGG--GH----HHHHHSCCCEEEECCTTSTTSC---C----CSSCBCCHHHHHHHHHHHHHH--SST
T ss_pred CCeEEEECCCCCccch--HH----HHHHHcCCeEEEEcCCCCCCCC---C----CCCCCCCHHHHHHHHHHHHHH--hCC
Confidence 5789999998665432 32 3444459999999999955332 1 112334567777766666654 345
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc----c--c-----cC-ccc--cc----cc--CCC-CC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK----F--T-----IA-YYS--ES----EF--GSP-NN 626 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----~--~-----~~-~~~--~~----~~--g~~-~~ 626 (734)
+++.++|+|+||++++.++.++|++++++|+.+|......... . . .. ..+ .. .+ ..+ ..
T Consensus 146 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (330)
T 3p2m_A 146 GAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRD 225 (330)
T ss_dssp TCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSC
T ss_pred CCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCC
Confidence 6899999999999999999999999999999987644221100 0 0 00 000 00 00 000 11
Q ss_pred HHHHH-HHHhC-------------Ccc----------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 627 KTHFH-NLLSY-------------SPL----------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 627 ~~~~~-~~~~~-------------sp~----------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
.+.+. .+... ..+ ..+. .+++| +|+++|++|..|++..+.++.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~P-vLii~G~~D~~v~~~~~~~l~~~~~~--- 297 (330)
T 3p2m_A 226 VKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVD----ALSAP-ITLVRGGSSGFVTDQDTAELHRRATH--- 297 (330)
T ss_dssp HHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHH----HCCSC-EEEEEETTCCSSCHHHHHHHHHHCSS---
T ss_pred HHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHh----hCCCC-EEEEEeCCCCCCCHHHHHHHHHhCCC---
Confidence 11111 11100 000 0111 25667 99999999999998888777665532
Q ss_pred CCCCCCCcEE-EEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 683 SLPYQKNPLL-LRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 683 ~~~~~~~~~~-~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
.+ +++++++||....... .+....+.+||.
T Consensus 298 --------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 328 (330)
T 3p2m_A 298 --------FRGVHIVEKSGHSVQSDQP--RALIEIVRGVLD 328 (330)
T ss_dssp --------EEEEEEETTCCSCHHHHCH--HHHHHHHHHHTT
T ss_pred --------CeeEEEeCCCCCCcchhCH--HHHHHHHHHHHh
Confidence 36 8899999998743222 345555677764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-12 Score=130.02 Aligned_cols=227 Identities=8% Similarity=-0.025 Sum_probs=147.4
Q ss_pred ceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCC-CCCCCeeEEe
Q psy4818 166 DWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGT-EQDKDIPVVE 244 (734)
Q Consensus 166 ~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t-~~~~~~~v~~ 244 (734)
...+|++||+.+++.............++|||||+.|++.. + ..|+++++.+ +... .+..
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~----------------~~i~~~d~~~~~~~~--~~~~ 80 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E----------------GLLYRLSLAGDPSPE--KVDT 80 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-T----------------TEEEEEESSSCCSCE--ECCC
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-C----------------CeEEEEeCCCCCCce--Eecc
Confidence 45789999999988654333333346899999999999865 1 1799999987 5432 2222
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCC
Q psy4818 245 FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTK 323 (734)
Q Consensus 245 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 323 (734)
.. .......+.|||||++|++..........||.+++.++. ...+..... ... .|+|||+.|++....
T Consensus 81 ~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~-~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 81 GF-ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT---------PRLMTKNLP-SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp TT-CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC---------CEECCSSSS-EEEEEECTTSSEEEEEEEE
T ss_pred cc-ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc---------eEEeecCCC-ccceEECCCCCEEEEEECC
Confidence 21 112345689999999999877543345799999988732 122222222 222 499999999887654
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEee
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHI 402 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~ 402 (734)
++ ..+|+.+++.++. ...+.... ..+..+.+. +++.+++....++...|+.+++. ++..+.+......+..+
T Consensus 150 ~~-~~~l~~~~~~~~~---~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 150 DQ-VFDIYSMDIDSGV---ETRLTHGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD-GSSVERITDSAYGDWFP 222 (297)
T ss_dssp TT-EEEEEEEETTTCC---EEECCCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-SSCEEECCCCSEEEEEE
T ss_pred CC-ceEEEEEECCCCc---ceEcccCC--CccccceECCCCCEEEEEecCCCCccEEEECCC-CCCcEEEecCCcccCCe
Confidence 43 3568888887654 34443332 334445554 43456666655677788888874 44446666555667778
Q ss_pred ccCcccceEEEEEecCC-------CCceEEEEeC
Q psy4818 403 SGRRKYNEVFYGFTSFL-------QPGTIYHCNI 429 (734)
Q Consensus 403 ~~~~d~~~l~~~~ss~~-------~P~~~~~~d~ 429 (734)
.++++++.+++...... ....++.+|+
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 88999988877655432 2256999999
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=144.13 Aligned_cols=125 Identities=12% Similarity=0.022 Sum_probs=78.4
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++.....-+++- +.+.+.||++||+++.... |...+..+..+.||.|+++|.||.|.... ... ......
T Consensus 36 ~g~~l~y~~~G~~~~--~~~g~plvllHG~~~~~~~--w~~~~~~l~~~~~~~Via~D~rG~G~S~~---~~~-~~~~~~ 107 (330)
T 3nwo_A 36 GDHETWVQVTTPENA--QPHALPLIVLHGGPGMAHN--YVANIAALADETGRTVIHYDQVGCGNSTH---LPD-APADFW 107 (330)
T ss_dssp TTEEEEEEEECCSSC--CTTCCCEEEECCTTTCCSG--GGGGGGGHHHHHTCCEEEECCTTSTTSCC---CTT-SCGGGC
T ss_pred cCcEEEEEEecCccC--CCCCCcEEEECCCCCCchh--HHHHHHHhccccCcEEEEECCCCCCCCCC---CCC-Cccccc
Confidence 688887776655321 1112357888998776543 33333333332599999999999664431 000 001112
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
+++++.+.+..+++. ...+++.|+|||+||++++.++.++|++++++|+..+.
T Consensus 108 ~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~ 160 (330)
T 3nwo_A 108 TPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSP 160 (330)
T ss_dssp CHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCC
T ss_pred cHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCC
Confidence 344444444444433 13357999999999999999999999999998876654
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=144.59 Aligned_cols=219 Identities=16% Similarity=0.095 Sum_probs=128.6
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCC-CcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYG-VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~-~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
+|.++..... +..|.||++||... ......|.... ..|+ .||.|+++|+||.|.... .. ...
T Consensus 13 ~g~~l~y~~~--------G~g~~vvllHG~~~~~~~~~~w~~~~-~~L~-~~~~vi~~Dl~G~G~S~~---~~----~~~ 75 (282)
T 1iup_A 13 AGVLTNYHDV--------GEGQPVILIHGSGPGVSAYANWRLTI-PALS-KFYRVIAPDMVGFGFTDR---PE----NYN 75 (282)
T ss_dssp TTEEEEEEEE--------CCSSEEEEECCCCTTCCHHHHHTTTH-HHHT-TTSEEEEECCTTSTTSCC---CT----TCC
T ss_pred CCEEEEEEec--------CCCCeEEEECCCCCCccHHHHHHHHH-Hhhc-cCCEEEEECCCCCCCCCC---CC----CCC
Confidence 6766654321 23467999999532 22112344333 4565 599999999999654321 10 112
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc-------cccccC-c---
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF-------NKFTIA-Y--- 615 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~-------~~~~~~-~--- 615 (734)
.+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..|....... ...... .
T Consensus 76 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (282)
T 1iup_A 76 YSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENMR 153 (282)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHH--hCCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcCCCcHHHHH
Confidence 4567777666666655 23468999999999999999999999999999988765321000 000000 0
Q ss_pred ccccc-------------------cCCCCCHHHHHHHHh---------CC-ccCCCCCCCCCccCCcEEEEecCCCCCCC
Q psy4818 616 YSESE-------------------FGSPNNKTHFHNLLS---------YS-PLHNIKVPPNNTQYPATLVLTGDHDDRVP 666 (734)
Q Consensus 616 ~~~~~-------------------~g~~~~~~~~~~~~~---------~s-p~~~~~~p~~~~~~P~~Li~~g~~D~~v~ 666 (734)
.+... ...+.....+..+.. .. +...+.. ++.| +|+++|++|..+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~p 228 (282)
T 1iup_A 154 NLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKT----LPNE-TLIIHGREDQVVP 228 (282)
T ss_dssp HHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTT----CCSC-EEEEEETTCSSSC
T ss_pred HHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhh----cCCC-EEEEecCCCCCCC
Confidence 00000 001110000101000 00 0012222 6777 9999999999999
Q ss_pred ChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 667 PLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 667 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
+..+.++.+.+.. .++++++++||....... .+..+.+.+||.+
T Consensus 229 ~~~~~~~~~~~~~-----------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 272 (282)
T 1iup_A 229 LSSSLRLGELIDR-----------AQLHVFGRCGHWTQIEQT--DRFNRLVVEFFNE 272 (282)
T ss_dssp HHHHHHHHHHCTT-----------EEEEEESSCCSCHHHHSH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-----------CeEEEECCCCCCccccCH--HHHHHHHHHHHhc
Confidence 8887777665532 478999999998643222 3556667888875
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-14 Score=149.45 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=77.4
Q ss_pred CCCcEEEEecCCCCCcCCc---ccc----------HHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC----CCc
Q psy4818 486 RRNPVIIYGYGGYGVSVLP---TFS----------ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK----QNC 548 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~---~~~----------~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~----~~~ 548 (734)
+..|+||++||+.+..... .|. ..+...|+++||.|+++|+||.|.....- ........ ...
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-~~~~~~~~~~~~~~~ 126 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLK-DRQLSFTANWGWSTW 126 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCC-GGGGGGGTTCSHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCccc-ccccccccCCcHHHH
Confidence 4578999999987664311 122 13456677779999999999955432110 00000001 122
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCC
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVG 601 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~ 601 (734)
.+|+.+++++|.++ .+.++++++|+|+||++++.++.++ |++++++|+.++
T Consensus 127 ~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~ 178 (354)
T 2rau_A 127 ISDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDG 178 (354)
T ss_dssp HHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESC
T ss_pred HHHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecc
Confidence 46777788887665 3457899999999999999999998 999999998854
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=136.73 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=74.9
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..|.||++||..++.. .|.. ....|+++||.|+++|+||.|..... .....+++++.+.+..+++.-.
T Consensus 8 ~~g~~vvllHG~~~~~~--~w~~-~~~~L~~~g~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~- 76 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLGAW--IWYK-LKPLLESAGHKVTAVDLSAAGINPRR-------LDEIHTFRDYSEPLMEVMASIP- 76 (264)
T ss_dssp -CCCEEEEECCTTCCGG--GGTT-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHHHHHHHHHHHSC-
T ss_pred CCCCeEEEECCCccccc--hHHH-HHHHHHhCCCEEEEeecCCCCCCCCC-------cccccCHHHHHHHHHHHHHHhC-
Confidence 45688999999865443 3444 34667656999999999996654211 0112456677666655555421
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
..+++.|+||||||++++.++.++|++++++|+..+.
T Consensus 77 ~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 77 PDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp TTCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred CCCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 1357999999999999999999999999999887653
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=139.86 Aligned_cols=206 Identities=20% Similarity=0.159 Sum_probs=124.0
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.||++||..+.... |.. ....|++ +|.|+++|+||.|.... .. ....+++++.+.+..+++. ..
T Consensus 15 ~g~~vvllHG~~~~~~~--~~~-~~~~L~~-~~~vi~~Dl~G~G~S~~---~~----~~~~~~~~~~~dl~~~l~~--l~ 81 (269)
T 2xmz_A 15 TNQVLVFLHGFLSDSRT--YHN-HIEKFTD-NYHVITIDLPGHGEDQS---SM----DETWNFDYITTLLDRILDK--YK 81 (269)
T ss_dssp CSEEEEEECCTTCCGGG--GTT-THHHHHT-TSEEEEECCTTSTTCCC---CT----TSCCCHHHHHHHHHHHHGG--GT
T ss_pred CCCeEEEEcCCCCcHHH--HHH-HHHHHhh-cCeEEEecCCCCCCCCC---CC----CCccCHHHHHHHHHHHHHH--cC
Confidence 34569999998766543 333 3456765 69999999999664331 10 1134677777777776665 34
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc----c----------cc-cC-----cccccc--cCC-
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN----K----------FT-IA-----YYSESE--FGS- 623 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~----~----------~~-~~-----~~~~~~--~g~- 623 (734)
.+++.++|||+||.+++.++.++|++++++|+..|...+.... . .. .. ..|... +..
T Consensus 82 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
T 2xmz_A 82 DKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQ 161 (269)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTSGGGGGG
T ss_pred CCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhCcccccc
Confidence 5689999999999999999999999999999887643221000 0 00 00 000000 100
Q ss_pred -CCCHHHHH----------------HHHhCC----c--cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q psy4818 624 -PNNKTHFH----------------NLLSYS----P--LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680 (734)
Q Consensus 624 -~~~~~~~~----------------~~~~~s----p--~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~ 680 (734)
....+..+ .+..+. + ...+.. +++| +|+++|++|..+++... ++.+ .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~~~~~~-~~~~----~ 231 (269)
T 2xmz_A 162 LELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKE----IKVP-TLILAGEYDEKFVQIAK-KMAN----L 231 (269)
T ss_dssp GGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGG----CCSC-EEEEEETTCHHHHHHHH-HHHH----H
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHh----cCCC-EEEEEeCCCcccCHHHH-HHHh----h
Confidence 00111110 111110 1 112222 6777 99999999998876543 2333 3
Q ss_pred hCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
-..+++++++++||....... .+..+.+.+||.+.
T Consensus 232 -------~~~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 232 -------IPNSKCKLISATGHTIHVEDS--DEFDTMILGFLKEE 266 (269)
T ss_dssp -------STTEEEEEETTCCSCHHHHSH--HHHHHHHHHHHHHH
T ss_pred -------CCCcEEEEeCCCCCChhhcCH--HHHHHHHHHHHHHh
Confidence 224688999999998753322 35666788898764
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-14 Score=143.13 Aligned_cols=228 Identities=9% Similarity=-0.036 Sum_probs=135.9
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
..+|.++..... ++.|+||++||..+.... |.. +...|++ +|.|+++|+||.|..... .. ....
T Consensus 15 ~~~g~~l~~~~~--------g~~~~vv~lHG~~~~~~~--~~~-~~~~L~~-~~~vi~~D~~G~G~S~~~---~~-~~~~ 78 (302)
T 1mj5_A 15 EIKGRRMAYIDE--------GTGDPILFQHGNPTSSYL--WRN-IMPHCAG-LGRLIACDLIGMGDSDKL---DP-SGPE 78 (302)
T ss_dssp EETTEEEEEEEE--------SCSSEEEEECCTTCCGGG--GTT-TGGGGTT-SSEEEEECCTTSTTSCCC---SS-CSTT
T ss_pred EECCEEEEEEEc--------CCCCEEEEECCCCCchhh--hHH-HHHHhcc-CCeEEEEcCCCCCCCCCC---CC-CCcc
Confidence 347877765432 235899999998765543 332 2345665 689999999996543211 00 0112
Q ss_pred CCchhHHHHHHHHHHHcCCCCC-CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc---cc----------cc
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKP-KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR---FN----------KF 611 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~---~~----------~~ 611 (734)
...++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+.+|...... .. ..
T Consensus 79 ~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (302)
T 1mj5_A 79 RYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRS 156 (302)
T ss_dssp SSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHhc
Confidence 25677777777766665 344 6899999999999999999999999999998887653110 00 00
Q ss_pred ccC-------cccccc-----cCCCCCHHHHHHHH------------------hCC--------------ccCCCCCCCC
Q psy4818 612 TIA-------YYSESE-----FGSPNNKTHFHNLL------------------SYS--------------PLHNIKVPPN 647 (734)
Q Consensus 612 ~~~-------~~~~~~-----~g~~~~~~~~~~~~------------------~~s--------------p~~~~~~p~~ 647 (734)
... ..+... .......+....+. ... ....+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 233 (302)
T 1mj5_A 157 QAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSE--- 233 (302)
T ss_dssp TTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTT---
T ss_pred cchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhc---
Confidence 000 000000 00111111111111 110 0011222
Q ss_pred CccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 648 NTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 648 ~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
++.| +|+++|++|..+|+..+.++.+.+ . . ++.++ ++||....... .+..+.+.+|+.+..+.
T Consensus 234 -i~~P-~l~i~g~~D~~~~~~~~~~~~~~~----------~-~-~~~~~-~~gH~~~~e~p--~~~~~~i~~fl~~~~~~ 296 (302)
T 1mj5_A 234 -SPIP-KLFINAEPGALTTGRMRDFCRTWP----------N-Q-TEITV-AGAHFIQEDSP--DEIGAAIAAFVRRLRPA 296 (302)
T ss_dssp -CCSC-EEEEEEEECSSSSHHHHHHHTTCS----------S-E-EEEEE-EESSCGGGTCH--HHHHHHHHHHHHHHSCC
T ss_pred -cCCC-eEEEEeCCCCCCChHHHHHHHHhc----------C-C-ceEEe-cCcCcccccCH--HHHHHHHHHHHHhhccc
Confidence 5677 999999999999987655444322 2 2 77888 99998754433 46677789999998877
Q ss_pred CCCC
Q psy4818 728 KYYP 731 (734)
Q Consensus 728 ~~~~ 731 (734)
...|
T Consensus 297 ~~~~ 300 (302)
T 1mj5_A 297 HHHH 300 (302)
T ss_dssp CC--
T ss_pred cccc
Confidence 6655
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-13 Score=135.43 Aligned_cols=212 Identities=12% Similarity=0.041 Sum_probs=126.1
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||..+... .|.. ....|+++||.|+++|+||.|..... .....+++++.+.+..+++.-. ..
T Consensus 4 ~~~vvllHG~~~~~~--~w~~-~~~~L~~~g~rVia~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~-~~ 72 (273)
T 1xkl_A 4 GKHFVLVHGACHGGW--SWYK-LKPLLEAAGHKVTALDLAASGTDLRK-------IEELRTLYDYTLPLMELMESLS-AD 72 (273)
T ss_dssp CCEEEEECCTTCCGG--GGTT-HHHHHHHTTCEEEECCCTTSTTCCCC-------GGGCCSHHHHHHHHHHHHHTSC-SS
T ss_pred CCeEEEECCCCCCcc--hHHH-HHHHHHhCCCEEEEecCCCCCCCccC-------cccccCHHHHHHHHHHHHHHhc-cC
Confidence 478999999865543 3444 34667667999999999996643211 1122457777776666666521 13
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhc---------cccccccCcccc----cccCC-----------
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML---------RFNKFTIAYYSE----SEFGS----------- 623 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~---------~~~~~~~~~~~~----~~~g~----------- 623 (734)
+++.|+||||||++++.++.++|++++++|+.++..... ..........|. ..++.
T Consensus 73 ~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (273)
T 1xkl_A 73 EKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFG 152 (273)
T ss_dssp SCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECC
T ss_pred CCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccC
Confidence 589999999999999999999999999999876532100 000000000000 00000
Q ss_pred ----------CCCHHHHHHHH---hCCcc--------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 624 ----------PNNKTHFHNLL---SYSPL--------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 624 ----------~~~~~~~~~~~---~~sp~--------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
....+...... ...+. ....... -.+.| +|+++|++|..+|+..+.++.+.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P-~l~i~G~~D~~~p~~~~~~~~~~~p~~-- 228 (273)
T 1xkl_A 153 PKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDER-FGSVK-RVYIVCTEDKGIPEEFQRWQIDNIGVT-- 228 (273)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTT-GGGSC-EEEEEETTCTTTTHHHHHHHHHHHCCS--
T ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhh-hCCCC-eEEEEeCCccCCCHHHHHHHHHhCCCC--
Confidence 00011111100 00010 0111000 13566 999999999999998887777766433
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
++++++++||....... .+..+.+.+|+.+..
T Consensus 229 ---------~~~~i~~aGH~~~~e~P--~~~~~~i~~fl~~~~ 260 (273)
T 1xkl_A 229 ---------EAIEIKGADHMAMLCEP--QKLCASLLEIAHKYN 260 (273)
T ss_dssp ---------EEEEETTCCSCHHHHSH--HHHHHHHHHHHHHCC
T ss_pred ---------eEEEeCCCCCCchhcCH--HHHHHHHHHHHHHhc
Confidence 78889999998653332 356666788887653
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=141.37 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=80.5
Q ss_pred cEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCch
Q psy4818 470 TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 549 (734)
Q Consensus 470 ~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~ 549 (734)
.++.....-|. ...|.||++||.+++... |... ...|++.||.|+++|.||.|... ... .....++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~~~~--w~~~-~~~L~~~g~rvia~Dl~G~G~S~---~~~---~~~~y~~ 99 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTWSYL--YRKM-IPVFAESGARVIAPDFFGFGKSD---KPV---DEEDYTF 99 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCCGGG--GTTT-HHHHHHTTCEEEEECCTTSTTSC---EES---CGGGCCH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCchhh--HHHH-HHHHHhCCCeEEEeCCCCCCCCC---CCC---CcCCcCH
Confidence 77766544321 114789999998766543 4433 35566678999999999955432 111 0123456
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
+++.+.+..|++. ...+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 100 ~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~ 150 (310)
T 1b6g_A 100 EFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAX 150 (310)
T ss_dssp HHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred HHHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccc
Confidence 6666655555554 23358999999999999999999999999999987763
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-12 Score=147.86 Aligned_cols=264 Identities=11% Similarity=0.037 Sum_probs=166.2
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCC--------
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGS-------- 165 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~-------- 165 (734)
..++|||.+++|...+++.+...||+++..+++.....-. .....+++|||| +.|+|+....+.
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-------EEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-------CceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 4566899999999988777778899999877664332110 112357999999 999999865431
Q ss_pred -ceEEEEEEECCCCCcccc---cc-c-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC-
Q psy4818 166 -DWNTLHIKDVDTGKDYPE---VL-K-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK- 238 (734)
Q Consensus 166 -~~~~l~v~dl~~g~~~~~---~~-~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~- 238 (734)
...+||++++.++..... .. . .....++.|||||++|+|...+.. .....||++++.++..+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----------~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT-----------DPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT-----------CSCCEEEEEEEETTEECC
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC-----------CCcceEEEEECCCCCCcc
Confidence 135799999988763111 11 1 112357899999999999886431 12458999998776222
Q ss_pred CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEE
Q psy4818 239 DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318 (734)
Q Consensus 239 ~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~ 318 (734)
-+.+....+ . . ..+ ++|||++|++..+.......|+++|++++. ..+..++.........++..++.++
T Consensus 309 ~~~l~~~~~-~-~-~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~l~~~~~~~l~~~~~~~~~lv 377 (741)
T 1yr2_A 309 VTALIPDLK-A-Q-WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-------PRFDTVVPESKDNLESVGIAGNRLF 377 (741)
T ss_dssp CEEEECSSS-S-C-EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-------CEEEEEECCCSSEEEEEEEEBTEEE
T ss_pred cEEecCCCC-c-e-EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-------cccEEEecCCCCeEEEEEEECCEEE
Confidence 233433222 2 1 222 569999999988765445789999998721 1345555444333333455577888
Q ss_pred EEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeCC-ceeEEEEECCCCceeeeeC
Q psy4818 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQNV-RSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 319 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~l~~~dl~~g~~~~~l~ 393 (734)
+....++ ..+|+.++++++. .+.+..+. ...+..+.+ .+++.+++.+.... ...|+++|+.+|+. +.+.
T Consensus 378 ~~~~~dg-~~~l~~~~~~g~~---~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~-~~l~ 448 (741)
T 1yr2_A 378 ASYIHDA-KSQVLAFDLDGKP---AGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT-TPWE 448 (741)
T ss_dssp EEEEETT-EEEEEEEETTSCE---EEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE-EECS
T ss_pred EEEEECC-EEEEEEEeCCCCc---eeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEe
Confidence 7776544 4579999986543 23333222 233344433 34456777766544 45899999987763 4553
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=138.03 Aligned_cols=204 Identities=15% Similarity=0.077 Sum_probs=118.9
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.||++||..+.... |.. ....|++ .|.|+++|+||.|.... . ....++++.+.+..+++. ..
T Consensus 15 ~~~~vvllHG~~~~~~~--w~~-~~~~L~~-~~~via~Dl~G~G~S~~---~------~~~~~~~~a~dl~~~l~~--l~ 79 (255)
T 3bf7_A 15 NNSPIVLVHGLFGSLDN--LGV-LARDLVN-DHNIIQVDVRNHGLSPR---E------PVMNYPAMAQDLVDTLDA--LQ 79 (255)
T ss_dssp CCCCEEEECCTTCCTTT--THH-HHHHHTT-TSCEEEECCTTSTTSCC---C------SCCCHHHHHHHHHHHHHH--HT
T ss_pred CCCCEEEEcCCcccHhH--HHH-HHHHHHh-hCcEEEecCCCCCCCCC---C------CCcCHHHHHHHHHHHHHH--cC
Confidence 45789999998765543 443 3466765 69999999999654321 1 123455555444444433 12
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC--Ccchhcc-c------c-c--c-ccCc-ccccc-cCC-CCCHHHH
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILV--GALDMLR-F------N-K--F-TIAY-YSESE-FGS-PNNKTHF 630 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~--~~~d~~~-~------~-~--~-~~~~-~~~~~-~g~-~~~~~~~ 630 (734)
.+++.++|||+||.+++.++.++|++++++|+.. |...... . . . . .... ..... +.. .......
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (255)
T 3bf7_A 80 IDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVI 159 (255)
T ss_dssp CSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHH
T ss_pred CCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHH
Confidence 3579999999999999999999999999988753 2211000 0 0 0 0 0000 00000 000 0000000
Q ss_pred HHH--------------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCc
Q psy4818 631 HNL--------------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690 (734)
Q Consensus 631 ~~~--------------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~ 690 (734)
..+ ........+.. +++| +|+++|++|..+++..+.++.+.+. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~l~i~G~~D~~~~~~~~~~~~~~~~-----------~ 223 (255)
T 3bf7_A 160 QFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPA----WDHP-ALFIPGGNSPYVSEQYRDDLLAQFP-----------Q 223 (255)
T ss_dssp HHHHTTEETTEESSCHHHHHHTHHHHHCCCCCCC----CCSC-EEEECBTTCSTTCGGGHHHHHHHCT-----------T
T ss_pred HHHHHhccCCceeecHHHHHhhhhhccccccccc----cCCC-eEEEECCCCCCCCHHHHHHHHHHCC-----------C
Confidence 000 00000011222 6777 9999999999999888766655432 3
Q ss_pred EEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 691 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.++++++++||....... .+....+.+||.+
T Consensus 224 ~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 254 (255)
T 3bf7_A 224 ARAHVIAGAGHWVHAEKP--DAVLRAIRRYLND 254 (255)
T ss_dssp EEECCBTTCCSCHHHHCH--HHHHHHHHHHHHT
T ss_pred CeEEEeCCCCCccccCCH--HHHHHHHHHHHhc
Confidence 588999999998643322 3556667888864
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=141.14 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec----ccCCCCCchhhhccccccCCCchhHHHHHHHHHHH
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI----RGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~----rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 561 (734)
+..|+||++||..+....+.+...+...| +.||.|+.+|+ ||.|... . ....+|+.+.+++|.+
T Consensus 36 ~~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~---~--------~~~~~d~~~~~~~l~~ 103 (335)
T 2q0x_A 36 DARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQD---H--------AHDAEDVDDLIGILLR 103 (335)
T ss_dssp TSSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCSCC---H--------HHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCCcc---c--------cCcHHHHHHHHHHHHH
Confidence 34688999999654433333223345566 46999999954 6744321 1 1235788888888876
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHh--cCCCceeEEEEcCCcch
Q psy4818 562 KKYTKPKYITIMGGSNGGLLVGACLN--QRPELYGAALILVGALD 604 (734)
Q Consensus 562 ~~~~d~~ri~i~G~S~GG~~~~~~~~--~~p~~~~a~v~~~~~~d 604 (734)
. .+.+++.|+||||||.+++.++. ++|++++++|+.+|+.+
T Consensus 104 ~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~ 146 (335)
T 2q0x_A 104 D--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD 146 (335)
T ss_dssp H--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred H--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence 4 45678999999999999999988 57999999999877643
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=143.59 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=84.1
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++.....-|++ +..|+||++||..+.... |.. ....|+++||.|+++|+||.|.... .. ....
T Consensus 10 ~~g~~l~y~~~G~~~----~~~~~vv~~hG~~~~~~~--~~~-~~~~l~~~g~~vi~~d~~g~g~s~~---~~---~~~~ 76 (356)
T 2e3j_A 10 CRGTRIHAVADSPPD----QQGPLVVLLHGFPESWYS--WRH-QIPALAGAGYRVVAIDQRGYGRSSK---YR---VQKA 76 (356)
T ss_dssp ETTEEEEEEEECCTT----CCSCEEEEECCTTCCGGG--GTT-THHHHHHTTCEEEEECCTTSTTSCC---CC---SGGG
T ss_pred cCCeEEEEEEecCCC----CCCCEEEEECCCCCcHHH--HHH-HHHHHHHcCCEEEEEcCCCCCCCCC---CC---cccc
Confidence 478888777655432 346899999998765543 333 2355666799999999999554321 11 1112
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
..++++...+..+++. ++.+++.++|+|+||.+++.++.++|++++++|+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 77 YRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 3455655555555544 355689999999999999999999999999999876543
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=141.42 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=82.9
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++..... ++.|+||++||..+.... |.. +...|++ +|.|+++|+||.|..... .. .....
T Consensus 15 ~~g~~l~~~~~--------g~~~~vv~lHG~~~~~~~--~~~-~~~~l~~-~~~vi~~D~~G~G~S~~~---~~-~~~~~ 78 (297)
T 2qvb_A 15 IAGKRMAYIDE--------GKGDAIVFQHGNPTSSYL--WRN-IMPHLEG-LGRLVACDLIGMGASDKL---SP-SGPDR 78 (297)
T ss_dssp ETTEEEEEEEE--------SSSSEEEEECCTTCCGGG--GTT-TGGGGTT-SSEEEEECCTTSTTSCCC---SS-CSTTS
T ss_pred ECCEEEEEEec--------CCCCeEEEECCCCchHHH--HHH-HHHHHhh-cCeEEEEcCCCCCCCCCC---CC-ccccC
Confidence 46777665432 235899999998765543 332 2355665 799999999996543211 00 01122
Q ss_pred CchhHHHHHHHHHHHcCCCCC-CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcch
Q psy4818 547 NCFDDFQAAAEYMINKKYTKP-KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d 604 (734)
..++++.+.+..+++. .+. +++.++|||+||.+++.++.++|++++++|+.+|...
T Consensus 79 ~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 135 (297)
T 2qvb_A 79 YSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT 135 (297)
T ss_dssp SCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCS
T ss_pred cCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccC
Confidence 4667777666666654 344 6899999999999999999999999999999887653
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=137.48 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=79.6
Q ss_pred cEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCch
Q psy4818 470 TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 549 (734)
Q Consensus 470 ~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~ 549 (734)
.++.....-+. ...|.||++||.+++... |... ...|+++||.|+++|+||.|.... .. .....++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~~~~--w~~~-~~~L~~~g~rvia~Dl~G~G~S~~---~~---~~~~~~~ 98 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSWSFL--YRKM-LPVFTAAGGRVVAPDLFGFGRSDK---PT---DDAVYTF 98 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCCGGG--GTTT-HHHHHHTTCEEEEECCTTSTTSCE---ES---CGGGCCH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCccee--HHHH-HHHHHhCCcEEEEeCCCCCCCCCC---CC---CcccCCH
Confidence 66765443221 115789999998765543 4433 355666799999999999664321 10 0123456
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
+++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 99 ~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 149 (297)
T 2xt0_A 99 GFHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA 149 (297)
T ss_dssp HHHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCC
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCC
Confidence 6666655555554 23368999999999999999999999999999987764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-12 Score=134.05 Aligned_cols=251 Identities=7% Similarity=0.030 Sum_probs=151.0
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCc-eEEEEEEECCCCCccccc-----ccccccCeeEEEcCCcEEEEEEEecCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSD-WNTLHIKDVDTGKDYPEV-----LKNVKFPSISWTHDHKGFFYNQYCDINGT 213 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~-~~~l~v~dl~~g~~~~~~-----~~~~~~~~~~wSpDg~~l~y~~~~~~~~~ 213 (734)
+...+..++|||||++||-.......- ...|++|+..++...... .....+..++|+||++.| ....+
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d----- 114 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS----- 114 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT-----
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC-----
Confidence 445689999999999999776543211 357999999887643211 111124678999998644 34322
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
..|.+|++.++....+..+....+...+..++|||||++|+... ....|.+||+.++
T Consensus 115 -----------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs----~dg~v~iwd~~~~-------- 171 (357)
T 4g56_B 115 -----------GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG----KDFSVKVWDLSQK-------- 171 (357)
T ss_dssp -----------SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE----TTSCEEEEETTTT--------
T ss_pred -----------CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe----CCCeEEEEECCCC--------
Confidence 15788888766433222222223344677899999999987433 2257999999872
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEE
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYI 371 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~ 371 (734)
.....+.......... |+++++.+++.... +..|.++|+.++.. ...+........+..+.+. +++.++++..
T Consensus 172 ~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~---dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 172 AVLKSYNAHSSEVNCVAACPGKDTIFLSCGE---DGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp EEEEEECCCSSCEEEEEECTTCSSCEEEEET---TSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEccCCCceeeeecc---CCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEee
Confidence 1122222222333333 88888766555443 34588999987652 1222212223334455554 3356666666
Q ss_pred eCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 372 QNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 372 ~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+ ..|++||+.+++.++.+......|..+.++|++..++++.+.. ..+.+||+
T Consensus 247 ~d--~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D---~~i~iwd~ 299 (357)
T 4g56_B 247 ET--GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED---CTVAVLDA 299 (357)
T ss_dssp SS--SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT---SCEEEECT
T ss_pred cc--cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC---CEEEEEEC
Confidence 55 4689999988887777876667788889999887777666543 36899998
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-13 Score=139.62 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++..... +..|+||++||.++... .|... ...|+++||.|+++|+||.|.... .. ......
T Consensus 18 ~~g~~l~y~~~--------G~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~via~Dl~G~G~S~~---~~-~~~~~~ 82 (328)
T 2cjp_A 18 VNGLNMHLAEL--------GEGPTILFIHGFPELWY--SWRHQ-MVYLAERGYRAVAPDLRGYGDTTG---AP-LNDPSK 82 (328)
T ss_dssp ETTEEEEEEEE--------CSSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTCBC---CC-TTCGGG
T ss_pred CCCcEEEEEEc--------CCCCEEEEECCCCCchH--HHHHH-HHHHHHCCcEEEEECCCCCCCCCC---cC-cCCccc
Confidence 47776655432 13478999999876543 34433 456666799999999999654321 10 000112
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
..++++.+.+..+++.-..+.+++.++|||+||.+++.++.++|++++++|+..+
T Consensus 83 ~~~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 137 (328)
T 2cjp_A 83 FSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137 (328)
T ss_dssp GSHHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEcc
Confidence 3445554444444433111246899999999999999999999999999998653
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-13 Score=135.72 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=84.8
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
..+|.++..... +..|+||++||..+.... |.. +...|.+ ||.|+++|+||.|..... .......
T Consensus 19 ~~~g~~l~~~~~--------g~~~~vv~lHG~~~~~~~--~~~-~~~~l~~-~~~v~~~D~~G~G~S~~~---~~~~~~~ 83 (306)
T 3r40_A 19 NTSSGRIFARVG--------GDGPPLLLLHGFPQTHVM--WHR-VAPKLAE-RFKVIVADLPGYGWSDMP---ESDEQHT 83 (306)
T ss_dssp CCTTCCEEEEEE--------ECSSEEEEECCTTCCGGG--GGG-THHHHHT-TSEEEEECCTTSTTSCCC---CCCTTCG
T ss_pred EeCCEEEEEEEc--------CCCCeEEEECCCCCCHHH--HHH-HHHHhcc-CCeEEEeCCCCCCCCCCC---CCCcccC
Confidence 347877766542 245789999998765543 443 3466776 999999999996643311 1100011
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
...++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+.+|.
T Consensus 84 ~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 138 (306)
T 3r40_A 84 PYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138 (306)
T ss_dssp GGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCC
Confidence 34567777766666665 34468999999999999999999999999999998864
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=137.60 Aligned_cols=248 Identities=14% Similarity=0.097 Sum_probs=145.2
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEecccc-----CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecc--c-
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGAL-----RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIR--G- 528 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~-----~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~r--G- 528 (734)
...++++.|. -+.++...||+|+++. +++++|+|.++||..+....+.-......++++.|.++++++.. +
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~ 92 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCccee
Confidence 5667777775 5778999999999874 35679999999998655433222222456677779999998742 1
Q ss_pred ----CC------CCCchhhhcccc-c-cCCCchhHHHH--HHHHHHHc-------CCCCCCcEEEEEcChHHHHHHHHHh
Q psy4818 529 ----GG------ELGEDWHNAGRL-L-KKQNCFDDFQA--AAEYMINK-------KYTKPKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 529 ----~~------~~g~~~~~~~~~-~-~~~~~~~D~~~--~~~~l~~~-------~~~d~~ri~i~G~S~GG~~~~~~~~ 587 (734)
+. +.+..|+..... . .+...+++++. .+.++.++ ...+.++.+|.|+||||+-|+.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al 172 (299)
T 4fol_A 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHH
T ss_pred ecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHH
Confidence 10 011112211100 0 11222334321 23333222 2245678999999999999999988
Q ss_pred cC--CCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccC---CCCCCCCCccCCcEEEEecCCC
Q psy4818 588 QR--PELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLH---NIKVPPNNTQYPATLVLTGDHD 662 (734)
Q Consensus 588 ~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~---~~~~p~~~~~~P~~Li~~g~~D 662 (734)
++ |+.|+++.+.+|+.+........ ..+...+|... ..+..+++.. +... ...|++||.+|+.|
T Consensus 173 ~~~~~~~~~~~~s~s~~~~p~~~~~~~--~~~~~~~g~~~-----~~~~~~d~~~l~~~~~~----~~~~~i~id~G~~D 241 (299)
T 4fol_A 173 KGYSGKRYKSCSAFAPIVNPSNVPWGQ--KAFKGYLGEEK-----AQWEAYDPCLLIKNIRH----VGDDRILIHVGDSD 241 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCGGGSHHHH--HHHHHHTC----------CGGGCHHHHGGGSCC----CTTCCEEEEEETTC
T ss_pred hCCCCCceEEEEecccccCcccccccc--cccccccccch-----hhhhhcCHHHHHHhccc----CCCCceEEEecCCC
Confidence 74 67899999999988754321100 00111123211 1112333322 2222 23345999999999
Q ss_pred CCCCCh-HHHHHHHHHHhhhCCCCCCCCc--EEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 663 DRVPPL-HSYKFIATLQEKIGSLPYQKNP--LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 663 ~~v~~~-~~~~~~~~L~~~~~~~~~~~~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
....-. .+..|.++++++ |.+ ++++..+|.+|... . ......+-+.|..++||+
T Consensus 242 ~f~~~~l~~~~f~~a~~~~-------g~~~~~~~r~~~GydHsy~---f-~~~fi~dhl~fha~~Lgl 298 (299)
T 4fol_A 242 PFLEEHLKPELLLEAVKAT-------SWQDYVEIKKVHGFDHSYY---F-VSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTHHHHTCTHHHHHHHTTS-------TTTTCEEEEEETTCCSSHH---H-HHHHHHHHHHHHHHHTTC
T ss_pred cchhhhcCHHHHHHHHHhc-------CCCceEEEEeCCCCCCCHH---H-HHHHHHHHHHHHHHhcCC
Confidence 754211 235688888776 655 88999999899642 1 223455568999999986
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=139.87 Aligned_cols=114 Identities=10% Similarity=0.011 Sum_probs=82.8
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++.....- ..|+||++||+.+.... |.. ....|+++ |.|+++|+||.|..... ...
T Consensus 17 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~~~~--~~~-~~~~L~~~-~~vi~~D~~G~G~S~~~--------~~~ 76 (301)
T 3kda_A 17 VDGVKLHYVKGG--------QGPLVMLVHGFGQTWYE--WHQ-LMPELAKR-FTVIAPDLPGLGQSEPP--------KTG 76 (301)
T ss_dssp ETTEEEEEEEEE--------SSSEEEEECCTTCCGGG--GTT-THHHHTTT-SEEEEECCTTSTTCCCC--------SSC
T ss_pred eCCeEEEEEEcC--------CCCEEEEECCCCcchhH--HHH-HHHHHHhc-CeEEEEcCCCCCCCCCC--------CCC
Confidence 378777755432 45789999998766543 433 34567764 99999999996644311 233
Q ss_pred CchhHHHHHHHHHHHcCCCCCCc-EEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKY-ITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
..++++.+.+..+++. ...++ +.++|||+||.+++.++.++|++++++|+.+|.
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 131 (301)
T 3kda_A 77 YSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAP 131 (301)
T ss_dssp SSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSC
T ss_pred ccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccC
Confidence 4566776666666554 23456 999999999999999999999999999988875
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.2e-13 Score=134.08 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=83.0
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
+...+.+.+|.++....+-+++ +.|.||++||..+... .|.. +...|++ ||.|+++|+||.|.... ..
T Consensus 6 ~~~~~~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~~~--~~~~-~~~~L~~-~~~vi~~Dl~G~G~S~~---~~ 73 (285)
T 3bwx_A 6 EDRYWTSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRNAR--DFED-LATRLAG-DWRVLCPEMRGRGDSDY---AK 73 (285)
T ss_dssp EEEEEECTTSCEEEEEEECBCT-----TSCCEEEECCTTCCGG--GGHH-HHHHHBB-TBCEEEECCTTBTTSCC---CS
T ss_pred ccCeeecCCCceEEEEEcCCCC-----CCCcEEEECCCCcchh--hHHH-HHHHhhc-CCEEEeecCCCCCCCCC---CC
Confidence 4455667789888776654321 2577899999865543 3443 4566765 99999999999664321 10
Q ss_pred cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 540 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
.....+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..
T Consensus 74 ---~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 74 ---DPMTYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp ---SGGGCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred ---CccccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 01123444444444333333 123579999999999999999999999999998753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-10 Score=120.89 Aligned_cols=244 Identities=12% Similarity=0.058 Sum_probs=152.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCC--CceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSG--SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g--~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
...++|||||++|+++...+. .....|+++|+++++.+...........++|+|||+.++++...
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------------- 109 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTV------------- 109 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETT-------------
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecC-------------
Confidence 457899999999966654321 12468999999999865433222334689999999988776532
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCC-------CeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNG-------RSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~-------~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
...|+++++.++.. +..+..... +....++.|||||+++++.... ....|+++|+.++.
T Consensus 110 --~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~i~~~d~~~~~-------- 175 (353)
T 3vgz_A 110 --NSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG--KESVIWVVDGGNIK-------- 175 (353)
T ss_dssp --TTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES--SSCEEEEEETTTTE--------
T ss_pred --CCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC--CCceEEEEcCCCCc--------
Confidence 23788888877642 122222111 1124578999999998876532 23679999998731
Q ss_pred Cceeeec--cccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC-C--CCceeEEEEEe-eCCEEEE
Q psy4818 295 PLKTVIP--GMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-D--ENRTLDVVAAV-ANNKLIV 368 (734)
Q Consensus 295 ~~~~l~~--~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~--~~~~~~~~~~~-~~~~l~~ 368 (734)
....+. +.......|+|||+.+|+... ...|+.+|+.+++ ....+.. . .......+.+. +++.+++
T Consensus 176 -~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 176 -LKTAIQNTGKMSTGLALDSEGKRLYTTNA----DGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp -EEEEECCCCTTCCCCEEETTTTEEEEECT----TSEEEEEETTTTE---EEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred -eEEEecCCCCccceEEECCCCCEEEEEcC----CCeEEEEECCCCe---EEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 112222 111112249999998887543 3479999998765 2222222 1 12233344444 4455655
Q ss_pred EEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 369 HYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 369 ~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
... ....|++||+.+++.+..+..+.. ..+.++++++.++++.... ..++.+|+
T Consensus 248 ~~~--~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~---~~v~~~d~ 301 (353)
T 3vgz_A 248 TDS--KAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQA---GKVSVIDA 301 (353)
T ss_dssp EES--SSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTT---TEEEEEET
T ss_pred EeC--CCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCC---CeEEEEEC
Confidence 442 336899999988987777765432 2466778888777765432 47999998
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=139.78 Aligned_cols=210 Identities=15% Similarity=0.126 Sum_probs=123.9
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|+||++||..+.... |.. +...|++ +|.|+++|+||.|.....-.. .....+++++.+.+..+++. .+.
T Consensus 20 ~~~vvllHG~~~~~~~--w~~-~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~----~~~~~~~~~~a~dl~~~l~~--l~~ 89 (271)
T 1wom_A 20 KASIMFAPGFGCDQSV--WNA-VAPAFEE-DHRVILFDYVGSGHSDLRAYD----LNRYQTLDGYAQDVLDVCEA--LDL 89 (271)
T ss_dssp SSEEEEECCTTCCGGG--GTT-TGGGGTT-TSEEEECCCSCCSSSCCTTCC----TTGGGSHHHHHHHHHHHHHH--TTC
T ss_pred CCcEEEEcCCCCchhh--HHH-HHHHHHh-cCeEEEECCCCCCCCCCCccc----ccccccHHHHHHHHHHHHHH--cCC
Confidence 4789999997655433 333 2345665 899999999996654311000 01112455665555555544 234
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-----ccc-------------cCccccc-----ccCCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN-----KFT-------------IAYYSES-----EFGSP 624 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----~~~-------------~~~~~~~-----~~g~~ 624 (734)
+++.++|||+||.+++.++.++|++++++|+..+........ .+. ....|.. .++.+
T Consensus 90 ~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (271)
T 1wom_A 90 KETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQP 169 (271)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCT
T ss_pred CCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999887642110000 000 0000100 01222
Q ss_pred CCHHHHHH----HHhCCc---------------cCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCC
Q psy4818 625 NNKTHFHN----LLSYSP---------------LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLP 685 (734)
Q Consensus 625 ~~~~~~~~----~~~~sp---------------~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~ 685 (734)
..++..+. +....| ...+.. +++| +|+++|++|..+|+..+..+.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lvi~G~~D~~~~~~~~~~~~~~~~------- 237 (271)
T 1wom_A 170 DRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSK----VTVP-SLILQCADDIIAPATVGKYMHQHLP------- 237 (271)
T ss_dssp TCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTT----CCSC-EEEEEEETCSSSCHHHHHHHHHHSS-------
T ss_pred CchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccc----cCCC-EEEEEcCCCCcCCHHHHHHHHHHCC-------
Confidence 22211111 111111 111222 6777 9999999999999877766655442
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 686 YQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 686 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
..++++++++||....... .+....+.+||.+++
T Consensus 238 ----~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 238 ----YSSLKQMEARGHCPHMSHP--DETIQLIGDYLKAHV 271 (271)
T ss_dssp ----SEEEEEEEEESSCHHHHCH--HHHHHHHHHHHHHHC
T ss_pred ----CCEEEEeCCCCcCccccCH--HHHHHHHHHHHHhcC
Confidence 2578899999998643222 355667888998763
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=129.05 Aligned_cols=169 Identities=15% Similarity=0.001 Sum_probs=114.9
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCe---EEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNG---IYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~---~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
.|+||++||..+... .|. .+...|.++|| .|+.+|+||.+... . ..++++.+.++.++++
T Consensus 3 ~~~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~~~~v~~~d~~g~g~s~---~---------~~~~~~~~~~~~~~~~-- 65 (181)
T 1isp_A 3 HNPVVMVHGIGGASF--NFA-GIKSYLVSQGWSRDKLYAVDFWDKTGTN---Y---------NNGPVLSRFVQKVLDE-- 65 (181)
T ss_dssp CCCEEEECCTTCCGG--GGH-HHHHHHHHTTCCGGGEEECCCSCTTCCH---H---------HHHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCcCCCHh--HHH-HHHHHHHHcCCCCccEEEEecCCCCCch---h---------hhHHHHHHHHHHHHHH--
Confidence 578999999865543 343 34566777898 59999999955321 1 2345666666666554
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCC
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNI 642 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~ 642 (734)
.+.+++.++|||+||.+++.++.++ |+.++++|+.+|......... + +. ..+
T Consensus 66 ~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~----------~--~~----------~~~---- 119 (181)
T 1isp_A 66 TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKA----------L--PG----------TDP---- 119 (181)
T ss_dssp HCCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSBC----------C--CC----------SCT----
T ss_pred cCCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccccc----------C--CC----------CCC----
Confidence 3456899999999999999999887 889999999998765422100 0 00 001
Q ss_pred CCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 643 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 643 ~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
. .+.| +|+++|++|..||+..+. + ...++++++++||.+.... .+....+.+||.
T Consensus 120 -~----~~~p-~l~i~G~~D~~v~~~~~~-----~-----------~~~~~~~~~~~gH~~~~~~---~~~~~~i~~fl~ 174 (181)
T 1isp_A 120 -N----QKIL-YTSIYSSADMIVMNYLSR-----L-----------DGARNVQIHGVGHIGLLYS---SQVNSLIKEGLN 174 (181)
T ss_dssp -T----CCCE-EEEEEETTCSSSCHHHHC-----C-----------BTSEEEEESSCCTGGGGGC---HHHHHHHHHHHT
T ss_pred -c----cCCc-EEEEecCCCccccccccc-----C-----------CCCcceeeccCchHhhccC---HHHHHHHHHHHh
Confidence 0 2344 999999999999987421 1 1247788999999875433 246666788876
Q ss_pred HH
Q psy4818 723 KS 724 (734)
Q Consensus 723 ~~ 724 (734)
+.
T Consensus 175 ~~ 176 (181)
T 1isp_A 175 GG 176 (181)
T ss_dssp TT
T ss_pred cc
Confidence 53
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=134.45 Aligned_cols=210 Identities=10% Similarity=0.012 Sum_probs=123.3
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||...... .|.. ....|+++||.|+++|+||.|..... .....+++++.+.+..+++.-. ..
T Consensus 3 ~~~vvllHG~~~~~~--~w~~-~~~~L~~~g~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~-~~ 71 (257)
T 3c6x_A 3 FAHFVLIHTICHGAW--IWHK-LKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEALP-PG 71 (257)
T ss_dssp CCEEEEECCTTCCGG--GGTT-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHTSC-TT
T ss_pred CCcEEEEcCCccCcC--CHHH-HHHHHHhCCCEEEEeCCCCCCCCCCC-------cccccCHHHHHHHHHHHHHhcc-cc
Confidence 367999999765443 3444 34667667999999999996653211 1112457777776666665521 12
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc-h-------hcc-ccc-cc-cCcccc----------------c-
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL-D-------MLR-FNK-FT-IAYYSE----------------S- 619 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~-d-------~~~-~~~-~~-~~~~~~----------------~- 619 (734)
+++.++||||||++++.++.++|++++++|+.++.. . +.. ... .. ....+. .
T Consensus 72 ~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (257)
T 3c6x_A 72 EKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFT 151 (257)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHH
T ss_pred CCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHH
Confidence 579999999999999999999999999998766531 0 000 000 00 000000 0
Q ss_pred ----ccCCCCCHHHHHHHHh-CCcc----------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCC
Q psy4818 620 ----EFGSPNNKTHFHNLLS-YSPL----------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSL 684 (734)
Q Consensus 620 ----~~g~~~~~~~~~~~~~-~sp~----------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~ 684 (734)
.+......+....... ..|. ....... -.+.| +|+++|++|..+|+..+.++++.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P-~l~i~G~~D~~~p~~~~~~~~~~~~~----- 224 (257)
T 3c6x_A 152 LLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEG-YGSIK-KIYVWTDQDEIFLPEFQLWQIENYKP----- 224 (257)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTT-GGGSC-EEEEECTTCSSSCHHHHHHHHHHSCC-----
T ss_pred HHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhh-cCccc-EEEEEeCCCcccCHHHHHHHHHHCCC-----
Confidence 0000001111111110 0110 0111000 02566 99999999999999888777776543
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 685 PYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 685 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.++++++++||....... .+..+.+.+|+..
T Consensus 225 ------~~~~~i~~~gH~~~~e~P--~~~~~~l~~f~~~ 255 (257)
T 3c6x_A 225 ------DKVYKVEGGDHKLQLTKT--KEIAEILQEVADT 255 (257)
T ss_dssp ------SEEEECCSCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred ------CeEEEeCCCCCCcccCCH--HHHHHHHHHHHHh
Confidence 378899999998643322 3555667778764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-11 Score=125.54 Aligned_cols=239 Identities=11% Similarity=0.079 Sum_probs=155.4
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+...+..+.|+|+++.++-... ...|++||+.+++.+... ........++|+|||+.|+....+
T Consensus 79 h~~~v~~~~~~~~~~~l~s~s~-----D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d---------- 143 (321)
T 3ow8_A 79 HQLGVVSVDISHTLPIAASSSL-----DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV---------- 143 (321)
T ss_dssp CSSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT----------
T ss_pred CCCCEEEEEECCCCCEEEEEeC-----CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC----------
Confidence 3455888999999998875442 247999999999864322 222234679999999988876532
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
..|.++++.++.. ...+.. ....+..++|||||++|+.... ...|.+||+.++. ....
T Consensus 144 ------g~v~i~~~~~~~~--~~~~~~--~~~~v~~~~~spdg~~lasg~~----dg~i~iwd~~~~~--------~~~~ 201 (321)
T 3ow8_A 144 ------GKVNIFGVESGKK--EYSLDT--RGKFILSIAYSPDGKYLASGAI----DGIINIFDIATGK--------LLHT 201 (321)
T ss_dssp ------SEEEEEETTTCSE--EEEEEC--SSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE--------EEEE
T ss_pred ------CcEEEEEcCCCce--eEEecC--CCceEEEEEECCCCCEEEEEcC----CCeEEEEECCCCc--------EEEE
Confidence 2688888876542 222222 2335678999999999985432 2579999998731 1222
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
+.......... |+|||+.|+..+. +..|..+|+.++. ....+... ...+..+.+..++..+++...+ ..
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~---~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D--~~ 271 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHAN---LAGTLSGH-ASWVLNVAFCPDDTHFVSSSSD--KS 271 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCC---EEEEECCC-SSCEEEEEECTTSSEEEEEETT--SC
T ss_pred EcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcc---eeEEEcCC-CCceEEEEECCCCCEEEEEeCC--Cc
Confidence 22222223333 9999987665433 3458899997654 23333332 2334555555446666666666 47
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|.+||+.+++.+..+....+.|..+.++++++.++ +.+.. ..+.+||.
T Consensus 272 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~-s~~~d---~~i~vwd~ 319 (321)
T 3ow8_A 272 VKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV-SVGDD---QEIHIYDC 319 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETT---CCEEEEEC
T ss_pred EEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EEeCC---CeEEEEeC
Confidence 99999988888778876667788888999887654 33332 35777775
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=124.79 Aligned_cols=231 Identities=9% Similarity=0.043 Sum_probs=153.1
Q ss_pred CCcEEeCCeEEEEEEcCCC---------CeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEE-eCC
Q psy4818 94 SAPQRQENNYFYFHNKGLQ---------NHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCL-SKS 163 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~-~~~ 163 (734)
+...++|+|+||.....+. +...||+++..+++.++|.+.. +..|||+|++|+|+. +..
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~-----------~~~~s~~g~~Iy~~~~~~~ 126 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-----------CIYASLIGNYIYYLHYDTQ 126 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC-----------EEEEEEETTEEEEEEESSS
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC-----------ccEEEEeCCEEEEEeecCC
Confidence 3445899999999886532 2467999988777766666532 237899999999987 233
Q ss_pred CCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEE
Q psy4818 164 GSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV 243 (734)
Q Consensus 164 g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~ 243 (734)
+. ..|+.+++++......+.... ..|+|||+.|||+.. ...+||+.++++... ..++
T Consensus 127 ~~--~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~---------------g~~~Iy~~~l~g~~~--~~l~ 183 (302)
T 3s25_A 127 TA--TSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNP---------------KNGQLYRYDTASQSE--ALFY 183 (302)
T ss_dssp SC--EEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECT---------------TTCCEEEEETTTTEE--EEEE
T ss_pred CC--ceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeC---------------CCceEEEEECCCCCE--EEEe
Confidence 33 789999999766444333322 456889999999863 123799999987643 3444
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCC
Q psy4818 244 EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTK 323 (734)
Q Consensus 244 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 323 (734)
.. . .. . .++|+|++|+++.... ...|+.++++++. .+.|+... ...++|+|++|||.++.
T Consensus 184 ~~---~-~~-~-~~~P~g~~iy~t~~~~--~~~I~~~~ldG~~---------~~~Lt~~~---~~~~~~~g~~Iy~~~~~ 243 (302)
T 3s25_A 184 DC---N-CY-K-PVVLDDTNVYYMDVNR--DNAIVHVNINNPN---------PVVLTEAN---IEHYNVYGSLIFYQRGG 243 (302)
T ss_dssp CS---C-EE-E-EEEEETTEEEEEEGGG--TTEEEEECSSSCC---------CEECSCSC---EEEEEEETTEEEEEECS
T ss_pred CC---C-cc-c-eeeecCCEEEEEEcCC--CcEEEEEECCCCC---------eEEEeCCC---cceEEECCCEEEEEECC
Confidence 32 2 22 2 3569999999876542 2689999999832 23343321 23489999999998765
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeee
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHS 391 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~ 391 (734)
.. ..|+++++++.. .+.|.... +..+.+.. +.|+++....+ .|+++.+ +|....+
T Consensus 244 ~~--~~i~~~~~DG~~---r~~l~~~~----~~~i~i~~-d~Iy~td~~~~--~i~~~~~-dGs~~~~ 298 (302)
T 3s25_A 244 DN--PALCVVKNDGTG---FKELAKGE----FCNINVTS-QYVYFTDFVSN--KEYCTST-QNPDTIK 298 (302)
T ss_dssp SS--CEEEEEETTSCC---CEEEEESC----EEEEEECS-SEEEEEETTTC--CEEEEES-SSCCSCE
T ss_pred CC--cEEEEEECCCCc---cEEeeCCc----cceEEEeC-CEEEEEECCCC--eEEEEEC-CCCCceE
Confidence 33 679999999865 24444332 23444454 88988764443 4888887 6654333
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=136.56 Aligned_cols=208 Identities=14% Similarity=0.064 Sum_probs=124.0
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
.++.|+||++||+.+... .|.. +...|++ +|.|+++|+||.|. ... ......++++.+.+..+++.
T Consensus 17 ~~~~~~vv~~HG~~~~~~--~~~~-~~~~l~~-~~~v~~~d~~G~G~---s~~-----~~~~~~~~~~~~~~~~~l~~-- 82 (267)
T 3fla_A 17 PDARARLVCLPHAGGSAS--FFFP-LAKALAP-AVEVLAVQYPGRQD---RRH-----EPPVDSIGGLTNRLLEVLRP-- 82 (267)
T ss_dssp TTCSEEEEEECCTTCCGG--GGHH-HHHHHTT-TEEEEEECCTTSGG---GTT-----SCCCCSHHHHHHHHHHHTGG--
T ss_pred CCCCceEEEeCCCCCCch--hHHH-HHHHhcc-CcEEEEecCCCCCC---CCC-----CCCCcCHHHHHHHHHHHHHh--
Confidence 356799999999865432 3433 4566765 79999999999443 211 12234566766666655554
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCc----eeEEEEcCCcchhccccccccC--c-cc---ccccC-CC----CCH--
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPEL----YGAALILVGALDMLRFNKFTIA--Y-YS---ESEFG-SP----NNK-- 627 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~----~~a~v~~~~~~d~~~~~~~~~~--~-~~---~~~~g-~~----~~~-- 627 (734)
.+.+++.|+|+|+||++++.++.++|+. ++++|+..+............. . .+ ...++ .+ .++
T Consensus 83 ~~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (267)
T 3fla_A 83 FGDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPEL 162 (267)
T ss_dssp GTTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHH
T ss_pred cCCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHH
Confidence 2557899999999999999999999985 7888877665322111000000 0 00 00000 00 000
Q ss_pred ---------HHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCC
Q psy4818 628 ---------THFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698 (734)
Q Consensus 628 ---------~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 698 (734)
..+..+..+.+... . .++.| +|+++|++|..+++..+.++.+.+ ..+++++++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~----------~~~~~~~~~~g 226 (267)
T 3fla_A 163 LAMVLPAIRSDYRAVETYRHEPG-R----RVDCP-VTVFTGDHDPRVSVGEARAWEEHT----------TGPADLRVLPG 226 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCTT-C----CBSSC-EEEEEETTCTTCCHHHHHGGGGGB----------SSCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhccccccc-C----cCCCC-EEEEecCCCCCCCHHHHHHHHHhc----------CCCceEEEecC
Confidence 11122223332222 2 26777 999999999999987766554433 23578999998
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 699 AGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 699 ~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
||.+.... ..+....+.+||.+..
T Consensus 227 -gH~~~~~~--~~~~~~~i~~fl~~~~ 250 (267)
T 3fla_A 227 -GHFFLVDQ--AAPMIATMTEKLAGPA 250 (267)
T ss_dssp -STTHHHHT--HHHHHHHHHHHTC---
T ss_pred -CceeeccC--HHHHHHHHHHHhcccc
Confidence 99865322 2355566777776654
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=135.90 Aligned_cols=125 Identities=10% Similarity=-0.019 Sum_probs=81.1
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-c--cccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccccc
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-P--TFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~--~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~ 544 (734)
+|.+|.....-+. +...|+||++||..+.... + .|.......|++ +|.|+++|+||.|.... ... ...
T Consensus 19 ~~~~l~y~~~G~~----~~~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~---~~~-~~~ 89 (286)
T 2qmq_A 19 PYGSVTFTVYGTP----KPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAP---VFP-LGY 89 (286)
T ss_dssp TTEEEEEEEESCC----CTTCCEEEEECCTTCCHHHHHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCC---CCC-TTC
T ss_pred CCeEEEEEeccCC----CCCCCeEEEeCCCCCCchhhhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCC---CCC-CCC
Confidence 5666665544321 1256899999998665431 1 122114566775 89999999999543211 100 000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
....++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 90 ~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 90 QYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp CCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 112566666655555544 233579999999999999999999999999999988854
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-14 Score=142.64 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=100.6
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhcCCCcee-EEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCC
Q psy4818 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYG-AALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHN 641 (734)
Q Consensus 563 ~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~-a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~ 641 (734)
..+|++||+|+|+|+||+|++.++.++|++|+ ++++.++......... .....+...++.+...+......+.+++..
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 84 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQ-YYTSCMYNGYPSITTPTANMKSWSGNQIAS 84 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSS-CGGGGSTTCCCCCHHHHHHHHHHBTTTBCC
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchH-HHHHHhhccCCCCCCHHHHHHHhhcccCCh
Confidence 45899999999999999999999999999998 8766655321110000 000000000111111222221212145555
Q ss_pred CCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCC--CcEEEEEeCCCCCCCCCchH--H--------
Q psy4818 642 IKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK--NPLLLRVEQDAGHGQGTPLM--K-------- 709 (734)
Q Consensus 642 ~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~--~-------- 709 (734)
+.. ++.||+||+||++|++||+.++.+++++|++. + .++++++++++||++..... .
T Consensus 85 ~~~----l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~-------g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~ 153 (318)
T 2d81_A 85 VAN----LGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNF-------DNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLST 153 (318)
T ss_dssp GGG----GGGCEEEEEEETTCCSSCHHHHHHHHHHHTTT-------SCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCC
T ss_pred hHc----CCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhc-------CCCcceEEEEeCCCCCCCccCCcccCccccccCC
Confidence 443 45566999999999999999999999999887 5 37999999999998643221 0
Q ss_pred -------hHHHHHHHHHHHHHHcC
Q psy4818 710 -------SIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 710 -------~~~~~~~~~~fl~~~l~ 726 (734)
.++....+++||...|.
T Consensus 154 ~pyi~~~~~d~~~~i~~ff~g~~~ 177 (318)
T 2d81_A 154 SPYISNCNYDGAGAALKWIYGSLN 177 (318)
T ss_dssp TTCEEECSSCHHHHHHHHHHSSCC
T ss_pred CCcccCCCChHHHHHHHHHhccCC
Confidence 25667789999987654
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=137.36 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=80.9
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++..... + +++.|.||++||.+++... |... ...|++ +|.|+++|+||.|.... .....
T Consensus 15 ~g~~l~y~~~---G---~g~~~pvvllHG~~~~~~~--w~~~-~~~L~~-~~~via~Dl~G~G~S~~--------~~~~~ 76 (316)
T 3afi_E 15 LGSSMAYRET---G---AQDAPVVLFLHGNPTSSHI--WRNI-LPLVSP-VAHCIAPDLIGFGQSGK--------PDIAY 76 (316)
T ss_dssp TTEEEEEEEE---S---CTTSCEEEEECCTTCCGGG--GTTT-HHHHTT-TSEEEEECCTTSTTSCC--------CSSCC
T ss_pred CCEEEEEEEe---C---CCCCCeEEEECCCCCchHH--HHHH-HHHHhh-CCEEEEECCCCCCCCCC--------CCCCC
Confidence 6766654432 2 1333589999998776544 4433 355665 79999999999654321 11235
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
+++++.+.+..+++. ...+++.|+|+|+||.+++.++.++|++++++|+..+
T Consensus 77 ~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 77 RFFDHVRYLDAFIEQ--RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHH--cCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 677777777666665 2346899999999999999999999999999988764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-11 Score=124.31 Aligned_cols=282 Identities=10% Similarity=0.018 Sum_probs=158.4
Q ss_pred eCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy4818 99 QENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 178 (734)
Q Consensus 99 ~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g 178 (734)
+++++|..-... ..+.+.+..+++....+... .... .++|||||++|+++.... ..|+++|++++
T Consensus 8 ~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~------~~~~-~~~~s~dg~~l~~~~~~~----~~i~~~d~~~~ 72 (331)
T 3u4y_A 8 TSNFGIVVEQHL----RRISFFSTDTLEILNQITLG------YDFV-DTAITSDCSNVVVTSDFC----QTLVQIETQLE 72 (331)
T ss_dssp CCCEEEEEEGGG----TEEEEEETTTCCEEEEEECC------CCEE-EEEECSSSCEEEEEESTT----CEEEEEECSSS
T ss_pred CCCEEEEEecCC----CeEEEEeCcccceeeeEEcc------CCcc-eEEEcCCCCEEEEEeCCC----CeEEEEECCCC
Confidence 344555443222 23555565555544444321 1234 899999999887766433 37999999999
Q ss_pred Cc-ccccccccccCe-eEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEE
Q psy4818 179 KD-YPEVLKNVKFPS-ISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256 (734)
Q Consensus 179 ~~-~~~~~~~~~~~~-~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 256 (734)
+. ............ ++|+|||+.|+ +.... .....|+++++.++.. +..+.... ....+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~------------~~~~~i~v~d~~~~~~--~~~~~~~~---~~~~~~ 134 (331)
T 3u4y_A 73 PPKVVAIQEGQSSMADVDITPDDQFAV-TVTGL------------NHPFNMQSYSFLKNKF--ISTIPIPY---DAVGIA 134 (331)
T ss_dssp SCEEEEEEECSSCCCCEEECTTSSEEE-ECCCS------------SSSCEEEEEETTTTEE--EEEEECCT---TEEEEE
T ss_pred ceeEEecccCCCCccceEECCCCCEEE-EecCC------------CCcccEEEEECCCCCe--EEEEECCC---CccceE
Confidence 86 332222222345 89999999988 43211 1223799999876542 22222222 235789
Q ss_pred EecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 257 VTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 257 ~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
|||||++|++.... ....|++|+++.. ..+.. .. ...+........ .|+|||+++|+.... ...|.++|+
T Consensus 135 ~spdg~~l~~~~~~--~~~~i~~~~~~~~--g~~~~-~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~ 205 (331)
T 3u4y_A 135 ISPNGNGLILIDRS--SANTVRRFKIDAD--GVLFD-TG-QEFISGGTRPFNITFTPDGNFAFVANLI---GNSIGILET 205 (331)
T ss_dssp ECTTSSCEEEEEET--TTTEEEEEEECTT--CCEEE-EE-EEEECSSSSEEEEEECTTSSEEEEEETT---TTEEEEEEC
T ss_pred ECCCCCEEEEEecC--CCceEEEEEECCC--CcEee-cC-CccccCCCCccceEECCCCCEEEEEeCC---CCeEEEEEC
Confidence 99999998766443 1123788887651 11110 00 111211111222 399999988877654 346999999
Q ss_pred CCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCce--eeeeCC----C---CceEEeeccC
Q psy4818 336 NNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKR--LHSFPL----D---LGQITHISGR 405 (734)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~--~~~l~~----~---~g~v~~~~~~ 405 (734)
+++...+....++.. .....+.+. +++.+++... +...|++||+++|+. +..+.. . ......+.++
T Consensus 206 ~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 281 (331)
T 3u4y_A 206 QNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN 281 (331)
T ss_dssp SSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC
T ss_pred CCCcccceeeeccCC--CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC
Confidence 876520002233332 222334444 4344555432 345799999988875 222211 1 1111246778
Q ss_pred cccceEEEEEecCCCCceEEEEeC
Q psy4818 406 RKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 406 ~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+|++.++++... -..+.++|+
T Consensus 282 pdg~~l~v~~~~---~~~v~v~d~ 302 (331)
T 3u4y_A 282 KTETKLFISANI---SRELKVFTI 302 (331)
T ss_dssp TTSSEEEEEETT---TTEEEEEET
T ss_pred CCCCEEEEecCC---CCcEEEEEe
Confidence 999888776543 247899998
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.8e-13 Score=133.34 Aligned_cols=220 Identities=13% Similarity=0.027 Sum_probs=134.3
Q ss_pred cEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec--------ccCCCCCchhhh-cc
Q psy4818 470 TRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI--------RGGGELGEDWHN-AG 540 (734)
Q Consensus 470 ~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------rG~~~~g~~~~~-~~ 540 (734)
..+++.|++|++. .++.|+||.+||+. +. + .+||+|+.+|+ ||+.++|. |+. .+
T Consensus 90 ~~~~~~i~lP~~~--~~p~Pvii~i~~~~-------~~------~-~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 90 ISFTVTITYPSSG--TAPYPAIIGYGGGS-------LP------A-PAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEECCSSS--CSSEEEEEEETTCS-------SC------C-CTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eEEEEEEECCCCC--CCCccEEEEECCCc-------cc------c-CCCeEEEEecccccccccCCCCcccee-cccccC
Confidence 3578899999863 47789999998841 11 2 35999999998 67667776 442 22
Q ss_pred c-cccCCCc--hhHHHHHHHHHHHcC--CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc-----
Q psy4818 541 R-LLKKQNC--FDDFQAAAEYMINKK--YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK----- 610 (734)
Q Consensus 541 ~-~~~~~~~--~~D~~~~~~~l~~~~--~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----- 610 (734)
. ..++... .-|+..+++||..+. .+|++||+|+|+|+||..++++++..+ +++++|+.++..+-....+
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D~-Ri~~~v~~~~g~~G~~~~R~~~~~ 231 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEK-RIVLTLPQESGAGGSACWRISDYL 231 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTTSCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcCC-ceEEEEeccCCCCchhhhhhhhhh
Confidence 1 1122221 247889999999987 899999999999999999999999876 7899999887654221111
Q ss_pred ----ccc-------C-ccccc----ccCCCCCHHHHHHHHhCCccCC--CCCCCCCccCC-cEEEEecCCCCCCCChHHH
Q psy4818 611 ----FTI-------A-YYSES----EFGSPNNKTHFHNLLSYSPLHN--IKVPPNNTQYP-ATLVLTGDHDDRVPPLHSY 671 (734)
Q Consensus 611 ----~~~-------~-~~~~~----~~g~~~~~~~~~~~~~~sp~~~--~~~p~~~~~~P-~~Li~~g~~D~~v~~~~~~ 671 (734)
..+ + ..|+. .|... . ..-|+.+ +-. .-+| |+||+.| +|..+++.-..
T Consensus 232 ~~~Ge~v~~~~~~~~e~~Wf~~~~~~y~~~--~-------~~lP~D~h~L~A----LiAPRPllv~~g-~D~w~~~~g~~ 297 (375)
T 3pic_A 232 KSQGANIQTASEIIGEDPWFSTTFNSYVNQ--V-------PVLPFDHHSLAA----LIAPRGLFVIDN-NIDWLGPQSCF 297 (375)
T ss_dssp HHTTCCCCCHHHHTTTCSCSCGGGGGTTTC--G-------GGSSCCHHHHHH----TSTTSEEEEECC-CCGGGCHHHHH
T ss_pred cccCccccccccccCcccccccchhhhccc--c-------cccCcCHHHHHH----HhCCceEEEecC-CCcccCcHHHH
Confidence 000 0 12211 11100 0 0012111 000 1111 4999999 99999988766
Q ss_pred HHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC-chHHhHHHHHHHHHHHHHHcCCC
Q psy4818 672 KFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT-PLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 672 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
..+.+++..++... ....+.+.. .+||+... +... ...+++||.++|...
T Consensus 298 ~~~~~a~~VY~~lG-~~d~~~~~~--~ggH~Hc~fp~~~----~~~~~~F~~k~L~~~ 348 (375)
T 3pic_A 298 GCMTAAHMAWQALG-VSDHMGYSQ--IGAHAHCAFPSNQ----QSQLTAFVQKFLLGQ 348 (375)
T ss_dssp HHHHHHHHHHHHTT-CGGGEEEEC--CSCCSTTCCCGGG----HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHcC-CccceEEEe--eCCCccccCCHHH----HHHHHHHHHHHhCCC
Confidence 66666655443321 122355543 34553321 2121 245789999999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-11 Score=125.63 Aligned_cols=249 Identities=9% Similarity=0.045 Sum_probs=151.6
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCc-eEEEEEEECCCCCccc----cc-ccccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSD-WNTLHIKDVDTGKDYP----EV-LKNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~-~~~l~v~dl~~g~~~~----~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
..+..++|||||++|+-..+..+.- ...+++++........ .. .....+..++|+||+ .|+....+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d------- 102 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS------- 102 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT-------
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC-------
Confidence 3478999999999998666543321 1345555432221111 00 111123678999996 56544432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
..|.+|++.+++......+....+...+..++|||||++|+... ....|.+||+.++ ..
T Consensus 103 ---------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs----~d~~i~iwd~~~~--------~~ 161 (344)
T 4gqb_B 103 ---------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS----KDICIKVWDLAQQ--------VV 161 (344)
T ss_dssp ---------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTT--------EE
T ss_pred ---------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe----CCCeEEEEECCCC--------cE
Confidence 26889999877543322222223344677899999999987433 2257999999883 12
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeC
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQN 373 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 373 (734)
...+..+....... |++++..+++.... +..|.+||+.+++. ...+........+..+.+. +++.++++...+
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSE---DNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEET---TSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeecc---ccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 22233333333333 88998876665443 34588999987652 2333323223334444443 345677776666
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..|++||+.+++.+..+......|..+.++|++..++++.+... .+.++|+
T Consensus 237 --g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~---~i~vwd~ 287 (344)
T 4gqb_B 237 --GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC---SLAVLDS 287 (344)
T ss_dssp --SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS---CEEEECT
T ss_pred --CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC---eEEEEEC
Confidence 47999999889887888777677888999999877777666543 6899998
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=135.61 Aligned_cols=199 Identities=14% Similarity=0.033 Sum_probs=116.1
Q ss_pred Cc-EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 488 NP-VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 488 ~P-~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
.| .||++||..+... .|.. ....|++ +|.|+++|+||.|..... ...+++++ ++.+.+. ++
T Consensus 12 g~~~vvllHG~~~~~~--~w~~-~~~~L~~-~~~vi~~Dl~G~G~S~~~---------~~~~~~~~---~~~l~~~--l~ 73 (258)
T 1m33_A 12 GNVHLVLLHGWGLNAE--VWRC-IDEELSS-HFTLHLVDLPGFGRSRGF---------GALSLADM---AEAVLQQ--AP 73 (258)
T ss_dssp CSSEEEEECCTTCCGG--GGGG-THHHHHT-TSEEEEECCTTSTTCCSC---------CCCCHHHH---HHHHHTT--SC
T ss_pred CCCeEEEECCCCCChH--HHHH-HHHHhhc-CcEEEEeeCCCCCCCCCC---------CCcCHHHH---HHHHHHH--hC
Confidence 35 8999999765543 3443 3456764 999999999996543311 12344443 4455443 34
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc-ccC-------------------cccc--cccCCC
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF-TIA-------------------YYSE--SEFGSP 624 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~~~-------------------~~~~--~~~g~~ 624 (734)
+++.|+|||+||.+++.++.++|++++++|+..+.......... ... ..+. ..++.+
T Consensus 74 -~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 1m33_A 74 -DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTE 152 (258)
T ss_dssp -SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTST
T ss_pred -CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 78999999999999999999999999999987653211100000 000 0000 001111
Q ss_pred CCHHHHH----------------------HHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 625 NNKTHFH----------------------NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 625 ~~~~~~~----------------------~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
...+... .+........+.. +++| +|+++|++|..+++..+..+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~l~i~G~~D~~~~~~~~~~~~~~~~---- 223 (258)
T 1m33_A 153 TARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQN----VSMP-FLRLYGYLDGLVPRKVVPMLDKLWP---- 223 (258)
T ss_dssp THHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGG----CCSC-EEEEEETTCSSSCGGGCC-CTTTCT----
T ss_pred cchhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhh----CCCC-EEEEeecCCCCCCHHHHHHHHHhCc----
Confidence 1111111 1111111112222 6777 9999999999999876655443322
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
..++++++++||....... .+..+.+.+||.+
T Consensus 224 -------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 255 (258)
T 1m33_A 224 -------HSESYIFAKAAHAPFISHP--AEFCHLLVALKQR 255 (258)
T ss_dssp -------TCEEEEETTCCSCHHHHSH--HHHHHHHHHHHTT
T ss_pred -------cceEEEeCCCCCCccccCH--HHHHHHHHHHHHh
Confidence 2478889999998643322 3555667778753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-11 Score=141.31 Aligned_cols=256 Identities=9% Similarity=-0.009 Sum_probs=159.9
Q ss_pred CCcE-EeCCeEEEEEEcCCCCeeEEEEEeCCCC-CeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEE
Q psy4818 94 SAPQ-RQENNYFYFHNKGLQNHSILYVQRNLTG-STEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 171 (734)
Q Consensus 94 ~~p~-~~g~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~ 171 (734)
..++ |||.+++|.....+..+..||+++..++ + .+.+ .+ ....++++|||||+.|+|+.........+||
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~--~l~~--~~----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ--TIAD--KV----SGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC--CCCC--CE----EEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE--eCCc--cc----cCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 3456 8999999999987777788999987666 4 1211 11 1124579999999999999875443446899
Q ss_pred EEECCCCCccc-cc---ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCC--eeEEec
Q psy4818 172 IKDVDTGKDYP-EV---LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKD--IPVVEF 245 (734)
Q Consensus 172 v~dl~~g~~~~-~~---~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~--~~v~~~ 245 (734)
++++.++.... .. .......++.|||||++|+|..... ...+||++++.++..+. +.+...
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------------~~~~l~~~d~~~~~~~~~~~~l~~~ 317 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP-------------ETAEVHLLDLRKGNAHNTLEIVRPR 317 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS-------------SCEEEEEEESSSCTTCCCEEESSCC
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC-------------CCceEEEEECCCCCCCceeEEeecC
Confidence 99998875321 11 1111235789999999999988532 24589999998763322 223222
Q ss_pred CCCCeeEEEEEEecC---CcEEEEEEecC-CCCceEEEEeCCCCCCCcccCCCCcee-eeccccc-eEEEEEecCCeEEE
Q psy4818 246 PNGRSLGLHSEVTDC---GRYLLVSTSNN-TQGSDLHYFDLHSLPDGKISGKFPLKT-VIPGMDH-HHEIIANNGPELIV 319 (734)
Q Consensus 246 ~~~~~~~~~~~~SpD---G~~l~~~~~~~-~~~~~i~~~d~~~~~~~~l~~~~~~~~-l~~~~~~-~~~~~s~dg~~l~~ 319 (734)
.. .+.|++| |+.|+|.++.. .....|+.++++++ ..++. ++..... ....++++++.|++
T Consensus 318 ~~------~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~--------~~~~~~li~~~~~~~l~~~~~~~~~lv~ 383 (751)
T 2xe4_A 318 EK------GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--------SDWSHVLVDHSEDVFMESIAVRSNYLVV 383 (751)
T ss_dssp CT------TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST--------TCCCCEEECCCSSEEEEEEEECSSEEEE
T ss_pred CC------CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc--------ccceeeEECCCCCcEEEEEEEECCEEEE
Confidence 21 1234455 89998888764 34579999998751 12344 4433222 22347778889988
Q ss_pred EeCCCCCCceEEEEec-------CCCCCCCceEeecCCCCceeEEEE-----EeeCCEEEEEEEeCC-ceeEEEEECCCC
Q psy4818 320 KTTKNAPKGKVVTINL-------NNPCEKNWKTLIPEDENRTLDVVA-----AVANNKLIVHYIQNV-RSVMDLHDLNTG 386 (734)
Q Consensus 320 ~s~~~~~~~~l~~~d~-------~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~-~~~l~~~dl~~g 386 (734)
....++ ..+|+++++ +++. ..+.+......... .+. ..+++.+++...... .+.++.+|+.+|
T Consensus 384 ~~~~~g-~~~l~~~dl~~~~~~~~~g~--~~~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 384 AGRRAG-LTRIWTMMADSQDGVFKAGT--GLREVVMEEPIFTV-HLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp EEEETT-EEEEEEEECCTTTSCCCTTT--CCEECCCCCSSCEE-EECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred EEEeCC-EEEEEEEecccccccccCCc--cceEECCCCceeEE-EeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 877654 557999996 3332 02444222212222 221 123356776665543 458999999777
Q ss_pred ce
Q psy4818 387 KR 388 (734)
Q Consensus 387 ~~ 388 (734)
+.
T Consensus 460 ~~ 461 (751)
T 2xe4_A 460 SR 461 (751)
T ss_dssp CE
T ss_pred cE
Confidence 64
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-10 Score=125.79 Aligned_cols=279 Identities=12% Similarity=0.038 Sum_probs=169.7
Q ss_pred CCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC
Q psy4818 100 ENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179 (734)
Q Consensus 100 g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~ 179 (734)
++.+++....++ .+++.+..++.....+....+ .++...+..++|+|||+.++-.. ....|++||+++++
T Consensus 133 ~~~~~~~~~~~~----~i~~~d~~~g~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~-----~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 133 NTRLAIPLLEDE----GMDVLDINSGQTVRLSPPEKY-KKKLGFVETISIPEHNELWVSQM-----QANAVHVFDLKTLA 202 (433)
T ss_dssp SSEEEEEBTTSS----SEEEEETTTCCEEEECCCHHH-HTTCCEEEEEEEGGGTEEEEEEG-----GGTEEEEEETTTCC
T ss_pred CCeEEEEeCCCC----eEEEEECCCCeEeeecCcccc-cccCCceeEEEEcCCCEEEEEEC-----CCCEEEEEECCCce
Confidence 556666543321 245555544554444333222 12334678899999998765432 22479999999987
Q ss_pred cccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEe
Q psy4818 180 DYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVT 258 (734)
Q Consensus 180 ~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S 258 (734)
.+.... .......++|+|||+.++++... ...|+++++.++. .+..... ......+.|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~i~~~d~~~~~----~~~~~~~-~~~~~~~~~~ 262 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWI---------------SEDISVIDRKTKL----EIRKTDK-IGLPRGLLLS 262 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETT---------------TTEEEEEETTTTE----EEEECCC-CSEEEEEEEC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecC---------------CCcEEEEECCCCc----EEEEecC-CCCceEEEEc
Confidence 643222 22234678999999988877532 2279999987653 2222222 2246789999
Q ss_pred cCCcEEEEEEecCC----CCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEE
Q psy4818 259 DCGRYLLVSTSNNT----QGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTI 333 (734)
Q Consensus 259 pDG~~l~~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 333 (734)
|||++|++...... ....|++||+.++. ............. .|+|+|+.+++.... ...|.++
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~v~v~ 330 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEK---------LIDTIGPPGNKRHIVSGNTENKIYVSDMC---CSKIEVY 330 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---------EEEEEEEEECEEEEEECSSTTEEEEEETT---TTEEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCc---------EEeeccCCCCcceEEECCCCCEEEEEecC---CCEEEEE
Confidence 99999987764322 13589999998731 1222221122222 389999988887654 3479999
Q ss_pred ecCCCCCCCceEeecCCCCceeEEEEEeeCC-EEEEEEEeCCc------------eeEEEEECCCCceeeeeCCCCceEE
Q psy4818 334 NLNNPCEKNWKTLIPEDENRTLDVVAAVANN-KLIVHYIQNVR------------SVMDLHDLNTGKRLHSFPLDLGQIT 400 (734)
Q Consensus 334 d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~------------~~l~~~dl~~g~~~~~l~~~~g~v~ 400 (734)
|++++. ....++.. ..+..+.+..++ .+++....... ..|++||+.+++.+..+... ..+.
T Consensus 331 d~~~~~---~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~ 404 (433)
T 3bws_A 331 DLKEKK---VQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPT 404 (433)
T ss_dssp ETTTTE---EEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEE
T ss_pred ECCCCc---EEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCc
Confidence 998654 23344433 233455554434 45554433221 38999999888877766543 3466
Q ss_pred eeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 401 HISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 401 ~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+.++++++.+++..+.. ..+++|++
T Consensus 405 ~~~~s~dg~~l~~~~~~d---~~i~v~~~ 430 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLD---HQIRVYRR 430 (433)
T ss_dssp EEEECTTSCEEEEEETTT---TEEEEEEE
T ss_pred eEEEcCCCCEEEEEECCC---CeEEEEEe
Confidence 788899988776654322 46888877
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-13 Score=137.80 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=76.2
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhc--CeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 562 (734)
.+..|.||++||..+... .|.. +...|+++ ||.|+++|+||.|. ..... ...++|+.+.+..+.+.
T Consensus 33 ~~~~~~vvllHG~~~~~~--~~~~-~~~~L~~~~~g~~vi~~D~~G~G~---s~~~~------~~~~~~~~~~l~~~~~~ 100 (302)
T 1pja_A 33 RASYKPVIVVHGLFDSSY--SFRH-LLEYINETHPGTVVTVLDLFDGRE---SLRPL------WEQVQGFREAVVPIMAK 100 (302)
T ss_dssp --CCCCEEEECCTTCCGG--GGHH-HHHHHHHHSTTCCEEECCSSCSGG---GGSCH------HHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCChh--HHHH-HHHHHHhcCCCcEEEEeccCCCcc---chhhH------HHHHHHHHHHHHHHhhc
Confidence 355688999999766543 3443 45667777 89999999999543 21111 13467777777777665
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhcCCC-ceeEEEEcCCcc
Q psy4818 563 KYTKPKYITIMGGSNGGLLVGACLNQRPE-LYGAALILVGAL 603 (734)
Q Consensus 563 ~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~~~~~ 603 (734)
. .+++.++|||+||.++..++.++|+ .++++|+.++..
T Consensus 101 ~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~ 139 (302)
T 1pja_A 101 A---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ 139 (302)
T ss_dssp C---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred C---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence 4 4689999999999999999999999 699999887654
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-11 Score=127.08 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=81.2
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++..... +..|.||++||.+++.. .|.. ....|++ .|.|+++|.||.|..... .......
T Consensus 16 ~~g~~l~y~~~--------G~g~~lvllHG~~~~~~--~w~~-~~~~L~~-~~~via~Dl~G~G~S~~~----~~~~~~~ 79 (294)
T 1ehy_A 16 LPDVKIHYVRE--------GAGPTLLLLHGWPGFWW--EWSK-VIGPLAE-HYDVIVPDLRGFGDSEKP----DLNDLSK 79 (294)
T ss_dssp CSSCEEEEEEE--------ECSSEEEEECCSSCCGG--GGHH-HHHHHHT-TSEEEEECCTTSTTSCCC----CTTCGGG
T ss_pred ECCEEEEEEEc--------CCCCEEEEECCCCcchh--hHHH-HHHHHhh-cCEEEecCCCCCCCCCCC----ccccccC
Confidence 46777765432 13478999999876554 3444 3466775 699999999996654321 0000012
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.+++++.+.+..++++ ...+++.++|||+||.+++.++.++|++++++|+..+
T Consensus 80 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 132 (294)
T 1ehy_A 80 YSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 132 (294)
T ss_dssp GCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecC
Confidence 4566777666666665 2345799999999999999999999999999998775
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-10 Score=117.21 Aligned_cols=248 Identities=7% Similarity=-0.011 Sum_probs=155.1
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..+..++|||||++|+.... . ..|++||+.+++.+...........+.|+||++.|+....+. .
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----------~ 138 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSA-D----YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNV-----------M 138 (369)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCB-----------T
T ss_pred CcEEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCc-----------c
Confidence 44788999999999986653 2 379999999998654333333457899999999998877531 1
Q ss_pred cCCcEEEEEECCCCCCCCee---------EEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC
Q psy4818 222 HMGQKIYYHVLGTEQDKDIP---------VVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~---------v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
.....|+++++.+....... .............+.|+|||++|+.... ...|++||+.++ .
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~-~----- 208 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK----DGKISKYDVSNN-Y----- 208 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET----TSEEEEEETTTT-T-----
T ss_pred CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC----CCEEEEEECCCC-c-----
Confidence 12236777776654322111 1111111115667899999999886432 258999999871 1
Q ss_pred CCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEE
Q psy4818 293 KFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYI 371 (734)
Q Consensus 293 ~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (734)
.....+.......... |+|+++.|+..+. +..|..+|+.++. ....+... ..+..+.+..++..++...
T Consensus 209 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~---~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 209 -EYVDSIDLHEKSISDMQFSPDLTYFITSSR----DTNSFLVDVSTLQ---VLKKYETD--CPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp -EEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC---EEEEEECS--SCEEEEEECSSSSEEEEEE
T ss_pred -EeEEEEecCCCceeEEEECCCCCEEEEecC----CceEEEEECCCCc---eeeeecCC--CCceeEEecCCCceEEEee
Confidence 1122222222233333 8999988876554 3469999998765 23333332 3334444444344444443
Q ss_pred eCC------------ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 372 QNV------------RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 372 ~~~------------~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++ ...+.+||+.+++.+..+....+.+..+.++++++.++. .+.. ..+..|++
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~d---g~v~iw~~ 344 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS-GGED---GFIRLHHF 344 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE-EETT---SEEEEEEE
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEE-EcCC---CeEEEEEC
Confidence 332 227899999888887777766677888999998865543 3332 47888888
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=130.06 Aligned_cols=222 Identities=14% Similarity=-0.009 Sum_probs=132.7
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEec--------ccCCCCCchhhhc-cc
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI--------RGGGELGEDWHNA-GR 541 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------rG~~~~g~~~~~~-~~ 541 (734)
.+.+.|++|++ .++.|+||.+||+. . .+ .+||+++.+|+ +|+.++|. |+.. +.
T Consensus 124 sf~~~i~lP~g---~~P~Pvii~~~~~~-~------------~~-~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 124 SFSASIRKPSG---AGPFPAIIGIGGAS-I------------PI-PSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEECCSS---SCCEEEEEEESCCC-S------------CC-CTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEECCCC---CCCccEEEEECCCc-c------------cc-CCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 46899999976 47789999988641 1 02 35999999998 55666776 4432 11
Q ss_pred -cccCCCc--hhHHHHHHHHHHH----cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc----
Q psy4818 542 -LLKKQNC--FDDFQAAAEYMIN----KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK---- 610 (734)
Q Consensus 542 -~~~~~~~--~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---- 610 (734)
..++... .-++..+++||.. +..+|++||+|+|+|+||..++++++..+ +++++|+.++..+-....+
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D~-Ri~~vi~~~sg~~G~~~~R~~~~ 264 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALVD-RIALTIPQESGAGGAACWRISDQ 264 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCTTTTSCHHHHHH
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcCC-ceEEEEEecCCCCchhhhhhchh
Confidence 1122111 2478889999998 78899999999999999999999999876 7899999987654322111
Q ss_pred -----ccc-------C-ccccc----ccCCCCCHHHHHHHHhCCccCCCCCCCCCccCC-cEEEEecCCCCCCCChHHHH
Q psy4818 611 -----FTI-------A-YYSES----EFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYP-ATLVLTGDHDDRVPPLHSYK 672 (734)
Q Consensus 611 -----~~~-------~-~~~~~----~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P-~~Li~~g~~D~~v~~~~~~~ 672 (734)
..+ + ..|+. .|.+ +. ..-|+.+-.-. ..-.| |+||+.| +|..+++.....
T Consensus 265 ~~~~Ge~v~~~~~~~ge~~Wf~~~f~~y~~--~~-------~~LPfD~heL~--ALiAPRPlLv~~g-~D~w~~p~g~~~ 332 (433)
T 4g4g_A 265 QKAAGANIQTAAQIITENPWFSRNFDPHVN--SI-------TSVPQDHHLLA--ALIVPRGLAVFEN-NIDWLGPVSTTG 332 (433)
T ss_dssp HHHTTCCCCCHHHHTTTCCCSCTTTGGGTT--CG-------GGSSCCGGGHH--HHHTTSEEEEEEC-CCTTTCHHHHHH
T ss_pred hcccCcchhhhhcccCCccccchhhHhhcc--cc-------ccCCcCHHHHH--HhhCCceEEEecC-CCCcCCcHHHHH
Confidence 000 0 12210 1110 00 00122211000 01111 4899999 999998876665
Q ss_pred HHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCC
Q psy4818 673 FIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729 (734)
Q Consensus 673 ~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 729 (734)
.+.+++..++..+ ....+.+...++.+|... +... ...+++||.++|....
T Consensus 333 a~~aa~~VY~~lG-a~d~l~~~~~ggH~Hc~f-p~~~----r~~~~~F~~k~Lkg~~ 383 (433)
T 4g4g_A 333 CMAAGRLIYKAYG-VPNNMGFSLVGGHNHCQF-PSSQ----NQDLNSYINYFLLGQG 383 (433)
T ss_dssp HHHHHHHHHHHHT-CGGGEEEEECCSSCTTCC-CGGG----HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHcC-CccceEEEeeCCCCcccC-CHHH----HHHHHHHHHHHhCCCC
Confidence 5555544332211 123455555444455321 1111 2356899999996643
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-11 Score=126.45 Aligned_cols=237 Identities=6% Similarity=-0.003 Sum_probs=150.8
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-----cccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-----KNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
.+..++||||++ |+.... . ..|++||+++++.+.... ....+..++|||||+.|+....+.
T Consensus 84 ~v~~~~~s~d~~-l~~~s~-d----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~-------- 149 (344)
T 4gqb_B 84 GVADLTWVGERG-ILVASD-S----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI-------- 149 (344)
T ss_dssp CEEEEEEETTTE-EEEEET-T----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--------
T ss_pred CEEEEEEeCCCe-EEEEEC-C----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC--------
Confidence 377899999975 443332 2 369999999987543211 112346889999999888766433
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|.+|++.++. .+.....+...+..+.|+||++.++++.+. ...|.+||+.++. ...
T Consensus 150 --------~i~iwd~~~~~----~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~~--------~~~ 206 (344)
T 4gqb_B 150 --------CIKVWDLAQQV----VLSSYRAHAAQVTCVAASPHKDSVFLSCSE---DNRILLWDTRCPK--------PAS 206 (344)
T ss_dssp --------CEEEEETTTTE----EEEEECCCSSCEEEEEECSSCTTEEEEEET---TSCEEEEETTSSS--------CEE
T ss_pred --------eEEEEECCCCc----EEEEEcCcCCceEEEEecCCCCCceeeecc---ccccccccccccc--------eee
Confidence 68889988753 233323344466789999999877665543 2579999998732 122
Q ss_pred eeecccc--ceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeC
Q psy4818 298 TVIPGMD--HHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQN 373 (734)
Q Consensus 298 ~l~~~~~--~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 373 (734)
.+..... .... .|+|++..+++.... +..|.++|+.+++. ...+..+. ..+..+.+. ++..++++...+
T Consensus 207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg~v~~wd~~~~~~--~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NGTVSLVDTKSTSC--VLSSAVHS--QCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp ECC----CCCEEEEEECSSCTTEEEEEET---TSEEEEEESCC--C--CEEEECCS--SCEEEEEECSSSSCCEEEEETT
T ss_pred eeecceeeccceeeeecCCCCcceEEecc---CCcEEEEECCCCcE--EEEEcCCC--CCEEEEEEccCCCeEEEEEeCC
Confidence 2211111 1222 388877766655443 34699999987652 34443333 344555554 434677777666
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..|++||+.+++.. .+....+.|.++.++|++..++.+.+... .+..+++
T Consensus 280 --~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~---~v~~w~v 329 (344)
T 4gqb_B 280 --CSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH---QVVHHVV 329 (344)
T ss_dssp --SCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS---CEEEEEC
T ss_pred --CeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC---eEEEEEC
Confidence 46899999877753 45555677889999999988877766543 6888888
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-11 Score=122.15 Aligned_cols=243 Identities=14% Similarity=0.046 Sum_probs=144.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cc-----cccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KN-----VKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~-----~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
...++|||||++++++.... ..|+++|+.+++.+.... .. .....++|+|||+.|++........
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~----- 106 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE----- 106 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC-----
T ss_pred ccceEEcCCCCEEEEEeCCC----CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccc-----
Confidence 45789999999988776433 369999999998643221 11 1346799999999998875321000
Q ss_pred ccccc--CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 218 ETTAH--MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 218 ~~~~~--~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.... ....|+++++.++.. +..+.... ....+.|||||++|++. ...|+++|+.++.
T Consensus 107 -~~~~~~~~~~i~v~d~~~~~~--~~~~~~~~---~~~~~~~s~dg~~l~~~------~~~i~~~d~~~~~--------- 165 (337)
T 1pby_B 107 -LTHFEVQPTRVALYDAETLSR--RKAFEAPR---QITMLAWARDGSKLYGL------GRDLHVMDPEAGT--------- 165 (337)
T ss_dssp -SSCEEECCCEEEEEETTTTEE--EEEEECCS---SCCCEEECTTSSCEEEE------SSSEEEEETTTTE---------
T ss_pred -cccccccCceEEEEECCCCcE--EEEEeCCC---CcceeEECCCCCEEEEe------CCeEEEEECCCCc---------
Confidence 0000 235799999876532 22222222 22357899999998876 1479999998732
Q ss_pred ceeeecccc-ceEEEEEecCCeEEEEeCCCCC--------------------CceEEEEecCCCCCCCceEeecCCCCce
Q psy4818 296 LKTVIPGMD-HHHEIIANNGPELIVKTTKNAP--------------------KGKVVTINLNNPCEKNWKTLIPEDENRT 354 (734)
Q Consensus 296 ~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~--------------------~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 354 (734)
....+.... .....|+|||+.+++....... ...|+.+|+++++ ...+........
T Consensus 166 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~ 242 (337)
T 1pby_B 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAMREVRIMDVF 242 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEECSSC
T ss_pred EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC---ceEeecCCCCCc
Confidence 111111111 0111378998877654432210 0157899988765 221111111122
Q ss_pred eEEEEEeeCC-EEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 355 LDVVAAVANN-KLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 355 ~~~~~~~~~~-~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+.+..++ .+++. ...|++||+++++.+..+..+. .+.++.++++++.+++. + . ...++++|+
T Consensus 243 ~~~~~~s~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~-~-~--~~~i~v~d~ 308 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA-----YNVLESFDLEKNASIKRVPLPH-SYYSVNVSTDGSTVWLG-G-A--LGDLAAYDA 308 (337)
T ss_dssp EEEEEECTTSSEEEEE-----ESEEEEEETTTTEEEEEEECSS-CCCEEEECTTSCEEEEE-S-B--SSEEEEEET
T ss_pred eeeEEECCCCCEEEEe-----CCeEEEEECCCCcCcceecCCC-ceeeEEECCCCCEEEEE-c-C--CCcEEEEEC
Confidence 3344444434 55544 2579999998888766665442 34467788898877765 2 2 367999999
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=129.44 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=83.3
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.++.....-+ ...|+||++||..+.... |.. ....|++ +|.|+++|+||.|..... ....
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~~~~--~~~-~~~~L~~-~~~v~~~D~~G~G~S~~~--------~~~~ 68 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQDHRL--FKN-LAPLLAR-DFHVICPDWRGHDAKQTD--------SGDF 68 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCCGGG--GTT-HHHHHTT-TSEEEEECCTTCSTTCCC--------CSCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCcHhH--HHH-HHHHHHh-cCcEEEEccccCCCCCCC--------cccc
Confidence 666665543322 236899999998766543 444 3466664 799999999996643311 2334
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCCcc
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-PELYGAALILVGAL 603 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~~~ 603 (734)
.++++.+.+..+++. .+.+++.++|||+||++++.++.++ |++++++|+..|..
T Consensus 69 ~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 69 DSQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred CHHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 567777766666655 2445899999999999999999999 99999999988755
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=133.62 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=80.5
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++.... .+ .++.|.||++||..+.... |.. ....|++ .|.|+++|+||.|..... ....
T Consensus 28 ~~g~~l~y~~---~G---~g~~~~vvllHG~~~~~~~--w~~-~~~~L~~-~~~via~Dl~GhG~S~~~-------~~~~ 90 (318)
T 2psd_A 28 VLDSFINYYD---SE---KHAENAVIFLHGNATSSYL--WRH-VVPHIEP-VARCIIPDLIGMGKSGKS-------GNGS 90 (318)
T ss_dssp ETTEEEEEEE---CC---SCTTSEEEEECCTTCCGGG--GTT-TGGGTTT-TSEEEEECCTTSTTCCCC-------TTSC
T ss_pred eCCeEEEEEE---cC---CCCCCeEEEECCCCCcHHH--HHH-HHHHhhh-cCeEEEEeCCCCCCCCCC-------CCCc
Confidence 3676665432 12 2344689999998765543 333 2345664 689999999996643211 1123
Q ss_pred CchhHHHHHHHHHHHcCCCCC-CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 547 NCFDDFQAAAEYMINKKYTKP-KYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
..++++.+.+..+++. .+. +++.|+|||+||.+++.++.++|++++++|+..
T Consensus 91 ~~~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~ 143 (318)
T 2psd_A 91 YRLLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHME 143 (318)
T ss_dssp CSHHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEec
Confidence 4677888777777765 344 689999999999999999999999999999854
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=123.13 Aligned_cols=207 Identities=12% Similarity=0.049 Sum_probs=130.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+..++|||||++||.+.. +....|++||+++++.+........+..++|||||+.|+....+
T Consensus 136 ~~~v~fSpDg~~la~as~---~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~--------------- 197 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASS---KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS--------------- 197 (365)
T ss_dssp EEEEEECTTSSCEEEEES---CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS---------------
T ss_pred EEEEEEcCCCCEEEEEEC---CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce---------------
Confidence 567899999999988763 33468999999999865433333345789999999998877532
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
.+.++...++.. +.......+...+..+.|||||++++...........++.|++....... .....+....
T Consensus 198 --~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~ 269 (365)
T 4h5i_A 198 --SLEVISTVTGSC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV----LRSKQVTNRF 269 (365)
T ss_dssp --CEEEEETTTCCE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE----EEEEEEESSC
T ss_pred --eEEEEEeccCcc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc----eeeeeecCCC
Confidence 355555554431 11111222344667899999999998776554433567888876521100 0011122222
Q ss_pred cceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEE
Q psy4818 304 DHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382 (734)
Q Consensus 304 ~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~d 382 (734)
...... |+|||+.|+..+.. ..|.+||+.+++. +..+... ....+..+.+..++.++++.+.| ..|.+|+
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D----~~V~iwd~~~~~~--~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D--~tvrvw~ 340 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASND----NSIALVKLKDLSM--SKIFKQA-HSFAITEVTISPDSTYVASVSAA--NTIHIIK 340 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETT----SCEEEEETTTTEE--EEEETTS-SSSCEEEEEECTTSCEEEEEETT--SEEEEEE
T ss_pred CCeEeEEECCCCCceEEEcCC----CEEEEEECCCCcE--EEEecCc-ccCCEEEEEECCCCCEEEEEeCC--CeEEEEE
Confidence 333343 99999988766553 4599999987651 2223222 23456667666667888888777 4788898
Q ss_pred CCC
Q psy4818 383 LNT 385 (734)
Q Consensus 383 l~~ 385 (734)
+..
T Consensus 341 ip~ 343 (365)
T 4h5i_A 341 LPL 343 (365)
T ss_dssp CCT
T ss_pred cCC
Confidence 853
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-12 Score=127.54 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=72.2
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||..+... .|.. ....|++.||.|+++|+||.|.... . ...+++++.+.+..+++.-..+.
T Consensus 16 ~~~vvllHG~~~~~~--~w~~-~~~~L~~~~~~vi~~Dl~GhG~S~~---~------~~~~~~~~a~~l~~~l~~l~~~~ 83 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA--DWQP-VLSHLARTQCAALTLDLPGHGTNPE---R------HCDNFAEAVEMIEQTVQAHVTSE 83 (264)
T ss_dssp BCEEEEECCTTCCGG--GGHH-HHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTT
T ss_pred CCcEEEEcCCCCCHH--HHHH-HHHHhcccCceEEEecCCCCCCCCC---C------CccCHHHHHHHHHHHHHHhCcCC
Confidence 488999999866554 3443 4466764699999999999664331 1 11346777776666666533332
Q ss_pred CcEEEEEcChHHHHHHH---HHhcCCCceeEEEEcCCc
Q psy4818 568 KYITIMGGSNGGLLVGA---CLNQRPELYGAALILVGA 602 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~---~~~~~p~~~~a~v~~~~~ 602 (734)
.++.++|||+||.+++. ++.++|+.++++|+..+.
T Consensus 84 ~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~ 121 (264)
T 1r3d_A 84 VPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH 121 (264)
T ss_dssp SEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred CceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence 24999999999999999 778899999999987653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-10 Score=114.84 Aligned_cols=237 Identities=10% Similarity=0.071 Sum_probs=151.2
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+..++|||||++|+-... . ..|.+||+++++.+.... .........|+||++.|+....+.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~-d----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~------------ 77 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLY-S----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF------------ 77 (304)
T ss_dssp CEEEEEECSSSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS------------
T ss_pred ceEEEEECCCCCEEEEEcC-C----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCC------------
Confidence 4788999999999986553 2 479999999987543221 222235789999999888766433
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
.|.+|++.++. .+..+. .+...+..++|+||+++|+-.. ....|.+||+.++ ........
T Consensus 78 ----~i~vwd~~~~~--~~~~~~--~h~~~v~~~~~~~~~~~l~sgs----~D~~v~lWd~~~~--------~~~~~~~~ 137 (304)
T 2ynn_A 78 ----RIRVFNYNTGE--KVVDFE--AHPDYIRSIAVHPTKPYVLSGS----DDLTVKLWNWENN--------WALEQTFE 137 (304)
T ss_dssp ----EEEEEETTTCC--EEEEEE--CCSSCEEEEEECSSSSEEEEEE----TTSCEEEEEGGGT--------TEEEEEEC
T ss_pred ----EEEEEECCCCc--EEEEEe--CCCCcEEEEEEcCCCCEEEEEC----CCCeEEEEECCCC--------cchhhhhc
Confidence 78999988764 222333 3444677899999999887332 2257999998762 11222222
Q ss_pred c-ccceEEE-EEec-CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe--eCCEEEEEEEeCCce
Q psy4818 302 G-MDHHHEI-IANN-GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV--ANNKLIVHYIQNVRS 376 (734)
Q Consensus 302 ~-~~~~~~~-~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 376 (734)
+ ....... |+|+ +..|+. ... +..|..||+.+... ...+.... ...+..+.+. .++.++++...+ .
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~s-gs~---D~~v~iwd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D--~ 208 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFAS-GCL---DRTVKVWSLGQSTP--NFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDD--L 208 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEE-EET---TSEEEEEETTCSSC--SEEEECCC-TTCEEEEEECCSTTCCEEEEEETT--S
T ss_pred ccCCcEEEEEECCCCCCEEEE-EeC---CCeEEEEECCCCCc--cceeccCC-cCcEEEEEEEEcCCCCEEEEEcCC--C
Confidence 2 2222333 8884 454543 332 34699999876542 23333332 2233333332 235566677666 4
Q ss_pred eEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|.+||+.+++.+..+......+..+.++|++..+ ++.+.. ..+.+||+
T Consensus 209 ~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~D---g~i~iWd~ 257 (304)
T 2ynn_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII-ISGSED---GTLKIWNS 257 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE-EEEETT---SCEEEEET
T ss_pred eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEE-EEEcCC---CeEEEEEC
Confidence 79999998888878887766677788888887644 444443 46889998
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=124.18 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=148.0
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc------cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL------KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~------~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..++||| ++.++++...++ .|++||+.+|+.+.... .......++|+|||+. +++...
T Consensus 126 ~~~~~s~-~~~~~~~~~~~~----~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~---------- 189 (433)
T 3bws_A 126 KSVRFID-NTRLAIPLLEDE----GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNEL-WVSQMQ---------- 189 (433)
T ss_dssp CCCEESS-SSEEEEEBTTSS----SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEE-EEEEGG----------
T ss_pred eEEEEeC-CCeEEEEeCCCC----eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEE-EEEECC----------
Confidence 4689999 555666554333 59999999998653211 1112356899998864 444321
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
...|+++++.++.. +..+. ........++|+|||+++++.... ...|++||+.++. ...
T Consensus 190 -----d~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~---~~~i~~~d~~~~~---------~~~ 248 (433)
T 3bws_A 190 -----ANAVHVFDLKTLAY--KATVD--LTGKWSKILLYDPIRDLVYCSNWI---SEDISVIDRKTKL---------EIR 248 (433)
T ss_dssp -----GTEEEEEETTTCCE--EEEEE--CSSSSEEEEEEETTTTEEEEEETT---TTEEEEEETTTTE---------EEE
T ss_pred -----CCEEEEEECCCceE--EEEEc--CCCCCeeEEEEcCCCCEEEEEecC---CCcEEEEECCCCc---------EEE
Confidence 23799999876532 22222 222355678999999998776432 2589999998731 111
Q ss_pred eeccccceEE-EEEecCCeEEEEeCCCC----CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEe
Q psy4818 299 VIPGMDHHHE-IIANNGPELIVKTTKNA----PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQ 372 (734)
Q Consensus 299 l~~~~~~~~~-~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~ 372 (734)
.+........ .|+|+|+.+++.+...+ .+..|+.+|+.+++ ....+... . ....+.+. +++.+++....
T Consensus 249 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 249 KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---LIDTIGPP-G-NKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---EEEEEEEE-E-CEEEEEECSSTTEEEEEETT
T ss_pred EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---EEeeccCC-C-CcceEEECCCCCEEEEEecC
Confidence 2222122222 38999998887764322 25679999998764 23333222 1 22334444 43467766544
Q ss_pred CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCC-----------ceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQP-----------GTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P-----------~~~~~~d~ 429 (734)
+ ..+++||+.+++....+... ..+..+.++++++.+++.......+ +.++.+|+
T Consensus 324 ~--~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 324 C--SKIEVYDLKEKKVQKSIPVF-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp T--TEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred C--CEEEEEECCCCcEEEEecCC-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 4 58999999888876666533 4456788899988787766543322 48999998
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-10 Score=132.62 Aligned_cols=239 Identities=9% Similarity=0.023 Sum_probs=152.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
...++|||||++||+... ..+++||+.+++.+.... ....+..++|||||+.|+-...+.
T Consensus 21 ~~~~~~spdg~~l~~~~~------~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~------------- 81 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNG------TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG------------- 81 (611)
T ss_dssp CCCCEECTTSSEEEEEET------TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTS-------------
T ss_pred eeEEeeCCCCCEEEeCCC------CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCC-------------
Confidence 346789999999999762 269999998876543222 222346789999999888776533
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
.|.+|++.++... +......+...+..++|||||++|+...........|++||... . ...+..+
T Consensus 82 ---~v~lWd~~~~~~~--~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~---------~~~l~gh 146 (611)
T 1nr0_A 82 ---NVRIWDTTQTTHI--LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-S---------NGNLTGQ 146 (611)
T ss_dssp ---EEEEEESSSTTCC--EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-B---------CBCCCCC
T ss_pred ---CEEEeECCCCcce--eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-C---------cceecCC
Confidence 6888998654322 22222223345678999999999986654322225788888543 1 1122222
Q ss_pred ccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEE
Q psy4818 303 MDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 303 ~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 381 (734)
....... |+|++...++.+.. +..|..+|..+.. ....+... ...+..+.+..++.++++...+ ..+.+|
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~---D~~v~lwd~~~~~---~~~~l~~H-~~~V~~v~fspdg~~las~s~D--~~i~lw 217 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSD---DNTVAIFEGPPFK---FKSTFGEH-TKFVHSVRYNPDGSLFASTGGD--GTIVLY 217 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEET---TSCEEEEETTTBE---EEEEECCC-SSCEEEEEECTTSSEEEEEETT--SCEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeC---CCeEEEEECCCCe---Eeeeeccc-cCceEEEEECCCCCEEEEEECC--CcEEEE
Confidence 2333333 99998754444333 3458888876543 23333332 3445666666556777777766 479999
Q ss_pred ECCCCceeeeeC-------CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 382 DLNTGKRLHSFP-------LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 382 dl~~g~~~~~l~-------~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.+|+.+..+. ...+.|.++.++|+++.++ +.+.. ..+.++|+
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~-s~s~D---~~v~lWd~ 268 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASAD---KTIKIWNV 268 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEETT---SEEEEEET
T ss_pred ECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE-EEeCC---CeEEEEeC
Confidence 998888766663 3456788899999987554 43332 47889998
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-10 Score=117.12 Aligned_cols=278 Identities=8% Similarity=0.019 Sum_probs=140.8
Q ss_pred eeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc---cccccc
Q psy4818 114 HSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---LKNVKF 190 (734)
Q Consensus 114 ~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~~~~~~ 190 (734)
.-.+|..+..++..+.+...... .....++|||||+ |+++...+ +...|++||+++|+..... ......
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~-----~~p~~~a~spdg~-l~~~~~~~--~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAAT-----QNPTYLALSAKDC-LYSVDKED--DEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEC-----SCCCCEEECTTCE-EEEEEEET--TEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeeeecc-----CCcceEEEccCCe-EEEEEecC--CCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 34466666555554433221111 1235689999999 55544322 2368999999887632211 122234
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC-CCeeEEecCC-------CCeeEEEEEEecCCc
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD-KDIPVVEFPN-------GRSLGLHSEVTDCGR 262 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~-~~~~v~~~~~-------~~~~~~~~~~SpDG~ 262 (734)
..++|||||+.|++.... ...|.++++..... ..+..+.... .......++|||||+
T Consensus 89 ~~~a~spdg~~l~~~~~~---------------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~ 153 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYH---------------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR 153 (347)
T ss_dssp SEEEEETTTTEEEEEETT---------------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEeCC---------------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc
Confidence 678999999988877632 12566777643211 1111111110 011345689999999
Q ss_pred EEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee--ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecC--CC
Q psy4818 263 YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI--PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLN--NP 338 (734)
Q Consensus 263 ~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~--~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~ 338 (734)
+++.. . ....|++|++.. ...+. ....+. .+.......|+|||+.+|+..... ..+.+++++ ++
T Consensus 154 -l~v~~-~--~~~~v~~~~~~~--~g~~~---~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~---~~v~v~~~~~~~g 221 (347)
T 3hfq_A 154 -LAVID-L--GSDKVYVYNVSD--AGQLS---EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS---SQIASLKYDTQTG 221 (347)
T ss_dssp -EEEEE-T--TTTEEEEEEECT--TSCEE---EEEEEECCTTCCEEEEEECTTSSEEEEEETTT---TEEEEEEEETTTT
T ss_pred -EEEEe-C--CCCEEEEEEECC--CCcEE---EeeeEEcCCCCCCceEEECCCCCEEEEEeCCC---CEEEEEEecCCCC
Confidence 55433 2 225799999873 11111 001111 111111224999999888765542 345555554 33
Q ss_pred CCCCceEeecCCCC----ceeEEEEEeeCC-EEEEEEEeCCceeEEEEECC-CCc--eeeeeCCCCceEEeeccCcccce
Q psy4818 339 CEKNWKTLIPEDEN----RTLDVVAAVANN-KLIVHYIQNVRSVMDLHDLN-TGK--RLHSFPLDLGQITHISGRRKYNE 410 (734)
Q Consensus 339 ~~~~~~~l~~~~~~----~~~~~~~~~~~~-~l~~~~~~~~~~~l~~~dl~-~g~--~~~~l~~~~g~v~~~~~~~d~~~ 410 (734)
.......+...... .....+.+..++ .+|+....+ ..|.+|++. +|+ .+..+......+..+.++||++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~--~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY--NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT--TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC--CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence 31011111111111 223445454434 566655433 568888874 333 22333332223456778899987
Q ss_pred EEEEEecCCCCceEEEEeC
Q psy4818 411 VFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 411 l~~~~ss~~~P~~~~~~d~ 429 (734)
+++..... .--.+|.+|.
T Consensus 300 l~v~~~~~-~~v~v~~~d~ 317 (347)
T 3hfq_A 300 VVVVNQNT-DNATLYARDL 317 (347)
T ss_dssp EEEEETTT-TEEEEEEECT
T ss_pred EEEEEcCC-CcEEEEEEeC
Confidence 77654432 2223444466
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-13 Score=146.90 Aligned_cols=223 Identities=14% Similarity=0.066 Sum_probs=135.4
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHHhcCeEEEEEecccCC-CCCchhhhccccccCCCch
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGG-ELGEDWHNAGRLLKKQNCF 549 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~~-~~g~~~~~~~~~~~~~~~~ 549 (734)
+.+.++.|++...+++.|+||++|||.... ....+.........+.|++|+.+|||.+. ||+..-.... .......+
T Consensus 86 l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~-~~~~n~gl 164 (522)
T 1ukc_A 86 LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQ-NGDLNAGL 164 (522)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHH-SSCTTHHH
T ss_pred CEEEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccc-cCCCChhH
Confidence 567888897654456789999999985433 22334433222222459999999999532 3432211110 01123458
Q ss_pred hHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcC----CCceeEEEEcCCcchhcccccccc--Ccccccc
Q psy4818 550 DDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQR----PELYGAALILVGALDMLRFNKFTI--AYYSESE 620 (734)
Q Consensus 550 ~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~----p~~~~a~v~~~~~~d~~~~~~~~~--~~~~~~~ 620 (734)
.|+.++++|+.++- -.||+||.|+|+|+||++++.++... +.+|+++|+.+|............ .......
T Consensus 165 ~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~~ 244 (522)
T 1ukc_A 165 LDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFVND 244 (522)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHHHHHHHHHHHHHH
Confidence 89999999998762 26999999999999999988877653 569999999999754321111000 0001112
Q ss_pred cCCCCCHHHHHHHHhCCccC------CCCCCCCCccCCc--EEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 621 FGSPNNKTHFHNLLSYSPLH------NIKVPPNNTQYPA--TLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 621 ~g~~~~~~~~~~~~~~sp~~------~~~~p~~~~~~P~--~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
.|.....+..+-|++.++.. .+..+ ....++ ++..++..|..+.+.++.++.++.+.. ++|+.
T Consensus 245 ~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~--~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~-------~vp~l 315 (522)
T 1ukc_A 245 TGCSSARDSLECLREQDIATIQKGNTGSPFP--GGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFI-------KVPVL 315 (522)
T ss_dssp TTCTTCSSHHHHHHHSCHHHHHHHSSCCCCT--TCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSC-------CCCEE
T ss_pred cCCCCHHHHHHHHHcCCHHHHHHHHHhcccc--ccccCcccccccccccCCcccCCCHHHHHhcCCCC-------CCCEE
Confidence 24332222333344333211 00000 001111 455677788888888888777665444 78999
Q ss_pred EEEeCCCCCCCC
Q psy4818 693 LRVEQDAGHGQG 704 (734)
Q Consensus 693 ~~~~~~~gH~~~ 704 (734)
+-...++||.+.
T Consensus 316 ~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 316 VGDDTDEGSNFA 327 (522)
T ss_dssp EEEETBGGGGTS
T ss_pred EEeecchhHHhh
Confidence 999999999886
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-09 Score=112.30 Aligned_cols=227 Identities=14% Similarity=0.092 Sum_probs=144.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++|||||++|+..... ..|.+||+.+++.+.... .......+.|+||++.|+....+.
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----------- 129 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDD-----KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE----------- 129 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS-----------
T ss_pred CceEEEEEcCCCCEEEEECCC-----CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----------
Confidence 457889999999999876532 479999999988543222 222235789999999887766432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|++|++.++. .+.....+...+..+.|+|||++|+.... ...|.+||+.++. ....+.
T Consensus 130 -----~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~--------~~~~~~ 188 (312)
T 4ery_A 130 -----SVRIWDVKTGK----CLKTLPAHSDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTASGQ--------CLKTLI 188 (312)
T ss_dssp -----CEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC--------EEEEEC
T ss_pred -----cEEEEECCCCE----EEEEecCCCCcEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc--------eeeEEe
Confidence 68889987653 22222223335678899999998875432 2579999998731 122222
Q ss_pred ccccceE-E-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCC-ceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 301 PGMDHHH-E-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDEN-RTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 301 ~~~~~~~-~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
....... . .|+|+|+.|+..+. +..|..+|+.++.. ...+..+... ..+.......++.++++...+ ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~ 260 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSED--NL 260 (312)
T ss_dssp CSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEE--EEEECSSCCSSSCCCEEEECSSSCEEEECCTT--SC
T ss_pred ccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcE--EEEEEecCCceEEEEEEEEeCCCcEEEEECCC--CE
Confidence 2222222 2 38999988776554 34699999977541 2222222211 112222223335666665555 47
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCcccceEEE
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFY 413 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~ 413 (734)
|++||+.+++.++.+......+..+.++|++..++.
T Consensus 261 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 999999888887888766666778888888876553
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-10 Score=115.36 Aligned_cols=239 Identities=15% Similarity=0.182 Sum_probs=147.3
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++|||||++||.... . ..|.+|++.+++...... ....+..++|+|||+.|+....+.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----------- 87 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSA-D----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK----------- 87 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------
T ss_pred CcEEEEEECCCCCEEEEeeC-C----CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCC-----------
Confidence 45788999999999987653 2 359999999887543222 222346899999999888776432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|.+|++.++.. +..+. .+...+..+.|+|+|++|+.... ...|.+||+.++. ....+.
T Consensus 88 -----~i~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~--------~~~~~~ 146 (312)
T 4ery_A 88 -----TLKIWDVSSGKC--LKTLK--GHSNYVFCCNFNPQSNLIVSGSF----DESVRIWDVKTGK--------CLKTLP 146 (312)
T ss_dssp -----EEEEEETTTCCE--EEEEE--CCSSCEEEEEECSSSSEEEEEET----TSCEEEEETTTCC--------EEEEEC
T ss_pred -----EEEEEECCCCcE--EEEEc--CCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCE--------EEEEec
Confidence 688899876532 22232 23345678899999999875432 2579999998731 122222
Q ss_pred ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 301 PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 301 ~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
......... |+++|+.|+..+.. ..|..+|+.++.. ...+.... ...+..+.+..++..++....+ ..|.
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d--~~i~ 217 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQC--LKTLIDDD-NPPVSFVKFSPNGKYILAATLD--NTLK 217 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCE--EEEECCSS-CCCEEEEEECTTSSEEEEEETT--TEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCce--eeEEeccC-CCceEEEEECCCCCEEEEEcCC--CeEE
Confidence 222223333 88998877655442 4589999976541 22333332 3445555555545666666555 4799
Q ss_pred EEECCCCceeeeeCCCCceE--EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 380 LHDLNTGKRLHSFPLDLGQI--THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~~g~v--~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+||+.+++.++.+....... .....++.+..++++.+. -..++.+|+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---dg~i~vwd~ 266 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE---DNLVYIWNL 266 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT---TSCEEEEET
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC---CCEEEEEEC
Confidence 99998888777665442111 111222233445444433 346899998
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-14 Score=142.45 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|+||++||..+.... |.. +...|+ +||.|+++|+||.|... ............++++.+.+..+++. .+
T Consensus 24 ~~p~vv~lHG~~~~~~~--~~~-~~~~l~-~g~~v~~~D~~G~G~s~---~~~~~~~~~~~~~~~~~~~l~~~l~~--l~ 94 (304)
T 3b12_A 24 SGPALLLLHGFPQNLHM--WAR-VAPLLA-NEYTVVCADLRGYGGSS---KPVGAPDHANYSFRAMASDQRELMRT--LG 94 (304)
Confidence 45789999998665443 333 345566 59999999999955432 11100001223444554444444433 24
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcch
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d 604 (734)
.+++.++|||+||.+++.++.++|++++++|+.+|...
T Consensus 95 ~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 95 FERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 45899999999999999999999999999999887654
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-13 Score=135.58 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=109.8
Q ss_pred eEEEEEEEcCCCcE-EeEEEEEecccc------CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCC
Q psy4818 458 QTKQVYFRSKDGTR-VPMYIIHRVGAL------RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGG 530 (734)
Q Consensus 458 ~~~~~~~~s~dg~~-i~~~~~~p~~~~------~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~ 530 (734)
..|.+.|++.++.. ...++..+.... ..+..|.||++||..+.... |.. +...|.+ ||.|+++|+||.|
T Consensus 14 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvllHG~~~~~~~--~~~-l~~~L~~-~~~v~~~D~~G~G 89 (280)
T 3qmv_A 14 GTENLYFQSNALLSQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSA--FRG-WQERLGD-EVAVVPVQLPGRG 89 (280)
T ss_dssp --------------CHHHHSCCCCCCCCCCCCCTTTCSEEEEEECCTTCCGGG--GTT-HHHHHCT-TEEEEECCCTTSG
T ss_pred CcceeeeecchhhhhcchheecCCCCCcccccccCCCCceEEEECCCCCChHH--HHH-HHHhcCC-CceEEEEeCCCCC
Confidence 46667787766632 222333221100 01123889999997665443 443 4566775 9999999999944
Q ss_pred CCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCcee----EEEEcCCcc-hh
Q psy4818 531 ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYG----AALILVGAL-DM 605 (734)
Q Consensus 531 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~----a~v~~~~~~-d~ 605 (734)
... . ......++++.+.+..+++.- ...+++.|+|+|+||.+++.++.++|+... .+++..... ..
T Consensus 90 ~S~---~-----~~~~~~~~~~a~~~~~~l~~~-~~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~ 160 (280)
T 3qmv_A 90 LRL---R-----ERPYDTMEPLAEAVADALEEH-RLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHL 160 (280)
T ss_dssp GGT---T-----SCCCCSHHHHHHHHHHHHHHT-TCSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGG
T ss_pred CCC---C-----CCCCCCHHHHHHHHHHHHHHh-CCCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCC
Confidence 321 1 122345666665554444432 134689999999999999999998887655 444433221 11
Q ss_pred cccccc-ccCc-c---ccccc-CCCCC---------------HHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCC
Q psy4818 606 LRFNKF-TIAY-Y---SESEF-GSPNN---------------KTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDR 664 (734)
Q Consensus 606 ~~~~~~-~~~~-~---~~~~~-g~~~~---------------~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~ 664 (734)
...... .... . +...+ +.+.. ...+..+..+.+. .... +++| +|+++|++|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~~P-~l~i~G~~D~~ 234 (280)
T 3qmv_A 161 YGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWH-PRPP----LDCP-TTAFSAAADPI 234 (280)
T ss_dssp CSCCCGGGSCHHHHHHHHHHHTCCC---------CCTTHHHHHHHHHHHHTCCCC-CCCC----BCSC-EEEEEEEECSS
T ss_pred cCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHHHHHHHHHHHHHHHhcccc-CCCc----eecC-eEEEEecCCCC
Confidence 110000 0000 0 00011 11100 0111222333221 1222 6777 99999999999
Q ss_pred CCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4818 665 VPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 665 v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 705 (734)
+++..+..+.+.+ ...+.++++++ ||....
T Consensus 235 ~~~~~~~~~~~~~----------~~~~~~~~~~g-gH~~~~ 264 (280)
T 3qmv_A 235 ATPEMVEAWRPYT----------TGSFLRRHLPG-NHFFLN 264 (280)
T ss_dssp SCHHHHHTTGGGB----------SSCEEEEEEEE-ETTGGG
T ss_pred cChHHHHHHHHhc----------CCceEEEEecC-CCeEEc
Confidence 9987765554432 33466777774 998754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-09 Score=114.30 Aligned_cols=240 Identities=10% Similarity=0.086 Sum_probs=151.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..+.|||||++|+-... + ..|++||+.+++.+... ........++|+|||+.|+....+.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~-D----g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----------- 119 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQ-D----GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN----------- 119 (340)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC-----------
T ss_pred CceEEEEECCCCCEEEEEeC-C----CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC-----------
Confidence 44788999999999885543 2 37999999988754322 2222236789999999888766432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.+.++++.+.............+...+..+.|+++++ |+ +.. ....|.+||+.++. ....+.
T Consensus 120 -----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~s---~d~~i~~wd~~~~~--------~~~~~~ 181 (340)
T 1got_B 120 -----ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IV-TSS---GDTTCALWDIETGQ--------QTTTFT 181 (340)
T ss_dssp -----EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EE-EEE---TTSCEEEEETTTTE--------EEEEEC
T ss_pred -----eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EE-EEE---CCCcEEEEECCCCc--------EEEEEc
Confidence 6888888765432223322223444667789999987 33 222 22579999998731 122222
Q ss_pred ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 301 PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 301 ~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
......... |+|+++.++..+. +..|..||+.++. ....+... ...+..+.+..++.++++...+ ..|.
T Consensus 182 ~h~~~v~~~~~~~~~~~l~sg~~----d~~v~~wd~~~~~---~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d--~~v~ 251 (340)
T 1got_B 182 GHTGDVMSLSLAPDTRLFVSGAC----DASAKLWDVREGM---CRQTFTGH-ESDINAICFFPNGNAFATGSDD--ATCR 251 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCS---EEEEECCC-SSCEEEEEECTTSSEEEEEETT--SCEE
T ss_pred CCCCceEEEEECCCCCEEEEEeC----CCcEEEEECCCCe---eEEEEcCC-cCCEEEEEEcCCCCEEEEEcCC--CcEE
Confidence 222233333 8899886664443 3458899997764 23333332 3345556565556667776666 4789
Q ss_pred EEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 380 LHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+||+.+++.+..+..+ ...+..+.+++++..++....+ ..+.+||+
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----~~i~vwd~ 299 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD----FNCNVWDA 299 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT----SEEEEEET
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC----CeEEEEEc
Confidence 9999878766555433 3457788899998766554332 46899998
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-09 Score=113.31 Aligned_cols=234 Identities=11% Similarity=0.036 Sum_probs=148.8
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc--cc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY--PE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~--~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..+..++|||||++|+..... ..|++||+.+++.. .. .........+.|+||++.|+....+.
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------- 163 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------- 163 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred CcEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC---------
Confidence 457899999999999876532 37999999988731 11 11222236789999999888766432
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|+++++.+.. .+..+. .+......+.|+|||++|+.... ...|++||+.++. ...
T Consensus 164 -------~v~~~d~~~~~--~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~---------~~~ 219 (337)
T 1gxr_A 164 -------NIAVWDLHNQT--LVRQFQ--GHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGR---------QLQ 219 (337)
T ss_dssp -------CEEEEETTTTE--EEEEEC--CCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTE---------EEE
T ss_pred -------cEEEEeCCCCc--eeeeee--cccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCc---------eEe
Confidence 58888887653 122222 23345678999999999886432 2689999998721 111
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
........... |+|+|+.+++.+.. ..|..+++.++. ...+..+ ...+..+.+..++.++++...+ ..
T Consensus 220 ~~~~~~~v~~~~~s~~~~~l~~~~~~----~~i~~~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--g~ 288 (337)
T 1gxr_A 220 QHDFTSQIFSLGYCPTGEWLAVGMES----SNVEVLHVNKPD---KYQLHLH--ESCVLSLKFAYCGKWFVSTGKD--NL 288 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETT----SCEEEEETTSSC---EEEECCC--SSCEEEEEECTTSSEEEEEETT--SE
T ss_pred eecCCCceEEEEECCCCCEEEEEcCC----CcEEEEECCCCC---eEEEcCC--ccceeEEEECCCCCEEEEecCC--Cc
Confidence 22222222333 89999988876543 359999998765 2333322 3445556665545666666655 47
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|++|++.+++.+..+. ....+..+.++++++.++....+ ..+..||+
T Consensus 289 i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~ 335 (337)
T 1gxr_A 289 LNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGD----KKATVYEV 335 (337)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETT----SCEEEEEE
T ss_pred EEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCC----CeEEEEEE
Confidence 9999998887654443 24557788888888766544332 35777765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-10 Score=128.31 Aligned_cols=240 Identities=11% Similarity=0.069 Sum_probs=141.1
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
.|+|+++++-. + +. +++.+..++.....+. ++...+..++|||||++||-... ...|++||+.
T Consensus 27 spdg~~l~~~~--~--~~--v~l~~~~~~~~~~~~~------~h~~~v~~~~~spdg~~lasg~~-----d~~v~lWd~~ 89 (611)
T 1nr0_A 27 TPAGDKIQYCN--G--TS--VYTVPVGSLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDV-----HGNVRIWDTT 89 (611)
T ss_dssp CTTSSEEEEEE--T--TE--EEEEETTCSSCCEEEC------CCSSCEEEEEECTTSSEEEEEET-----TSEEEEEESS
T ss_pred CCCCCEEEeCC--C--CE--EEEecCCCcccCeEec------CCCCceEEEEECCCCcEEEEEeC-----CCCEEEeECC
Confidence 47888888754 1 22 3333333333333332 23345889999999999996543 2479999998
Q ss_pred CCCccc-cc--ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEE
Q psy4818 177 TGKDYP-EV--LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGL 253 (734)
Q Consensus 177 ~g~~~~-~~--~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~ 253 (734)
+++... .+ .....+..++|||||+.|+....+. .....|++++.+... . .+ ..+...+.
T Consensus 90 ~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~------------~~~~~v~~wd~~~~~--~--~l--~gh~~~v~ 151 (611)
T 1nr0_A 90 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR------------ERFGHVFLFDTGTSN--G--NL--TGQARAMN 151 (611)
T ss_dssp STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS------------SCSEEEEETTTCCBC--B--CC--CCCSSCEE
T ss_pred CCcceeeEeecccCCceEEEEECCCCCEEEEEECCC------------CceeEEEEeeCCCCc--c--ee--cCCCCCce
Confidence 665321 11 1122346899999999998776432 122367777654321 1 11 22344677
Q ss_pred EEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEE
Q psy4818 254 HSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVT 332 (734)
Q Consensus 254 ~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~ 332 (734)
.+.|+||+++++++.+. ...|.+||..++ .....+..+....... |+|||+.|+-.+. +..|.+
T Consensus 152 ~v~f~p~~~~~l~s~s~---D~~v~lwd~~~~--------~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~l 216 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSD---DNTVAIFEGPPF--------KFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVL 216 (611)
T ss_dssp EEEECSSSSCEEEEEET---TSCEEEEETTTB--------EEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred EEEECCCCCeEEEEEeC---CCeEEEEECCCC--------eEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEE
Confidence 89999999865555433 257889997662 1112222223333343 9999987765443 345889
Q ss_pred EecCCCCCCCceEeecC------CCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeee
Q psy4818 333 INLNNPCEKNWKTLIPE------DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHS 391 (734)
Q Consensus 333 ~d~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~ 391 (734)
||+.++. ....+.. .....+..+.+..++..+++...+ ..+.+||+.+++.+..
T Consensus 217 wd~~~g~---~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D--~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 217 YNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--KTIKIWNVATLKVEKT 276 (611)
T ss_dssp EETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT--SEEEEEETTTTEEEEE
T ss_pred EECCCCc---EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC--CeEEEEeCCCCceeee
Confidence 9987654 2222211 123345566665556667776666 4788899877765443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-09 Score=116.14 Aligned_cols=287 Identities=10% Similarity=0.080 Sum_probs=167.1
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC--CCCCcccccccccccCeeEEEc----CCcEEEEEEEecCCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV--DTGKDYPEVLKNVKFPSISWTH----DHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl--~~g~~~~~~~~~~~~~~~~wSp----Dg~~l~y~~~~~~~~~~~~~ 217 (734)
+..+++||||++|+.+.. . ..|.+||+ ++++.+.....+....+++||| ||++||.....+
T Consensus 181 ~~~v~~spdg~~l~v~~~-d----~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~-------- 247 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR-D----ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP-------- 247 (543)
T ss_dssp EEEEEECTTSCEEEEEET-T----SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES--------
T ss_pred cceEEECCCCCEEEEECC-C----CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccC--------
Confidence 567899999998876553 2 46999999 7877544322233346889999 999887765422
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCC--------C-CeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCC
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPN--------G-RSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG 288 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~--------~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~ 288 (734)
..|.+++..+.... ..+.... + ......+.+|||++.+++... ....|+++|..++..
T Consensus 248 -------~~v~v~D~~t~~~~--~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~- 314 (543)
T 1nir_A 248 -------PQFAIMDGETLEPK--QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDN- 314 (543)
T ss_dssp -------SEEEEEETTTCCEE--EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSS-
T ss_pred -------CeEEEEeccccccc--eeecccCcccCccccccCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCc-
Confidence 26778887765321 1221100 0 114567899999998876543 236899999987321
Q ss_pred cccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC----CCceeEEEEEeeCC
Q psy4818 289 KISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED----ENRTLDVVAAVANN 364 (734)
Q Consensus 289 ~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 364 (734)
+ ....+-.+.....-.|+|||+++|...+. ...|.++|+++++ +...++.. ...... +..++++
T Consensus 315 -l----~~~~i~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~D~~tg~---l~~~i~~g~~ph~g~g~~-~~~p~~g 382 (543)
T 1nir_A 315 -L----TVTSIGAAPFLHDGGWDSSHRYFMTAANN---SNKVAVIDSKDRR---LSALVDVGKTPHPGRGAN-FVHPKYG 382 (543)
T ss_dssp -C----EEEEEECCSSCCCEEECTTSCEEEEEEGG---GTEEEEEETTTTE---EEEEEECSSSBCCTTCEE-EEETTTE
T ss_pred -c----eeEEeccCcCccCceECCCCCEEEEEecC---CCeEEEEECCCCe---EEEeeccCCCCCCCCCcc-cCCCCCc
Confidence 1 01111111111112499999988766543 2468889998765 33333321 111122 2223334
Q ss_pred EEEEEEEeCCceeEEEEECCC-------CceeeeeCCCCceEEeeccCcccceEEEEEecCCCC-----ceEEEEeCCCC
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNT-------GKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQP-----GTIYHCNIPEN 432 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~-------g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P-----~~~~~~d~~~~ 432 (734)
.++++ ...+...|.+||+.+ ++.++.|..+.+....+.++|+++.+++.. ...| ..+.++|+
T Consensus 383 ~~~~s-~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~--~~~~~~~~~~~v~v~d~--- 456 (543)
T 1nir_A 383 PVWST-SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT--TFNPDARISQSVAVFDL--- 456 (543)
T ss_dssp EEEEE-EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC--TTCSSHHHHTCEEEEET---
T ss_pred cEEEe-ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec--CCCCCcccCceEEEEEC---
Confidence 55544 333346799999977 677788876533333677889998887643 2223 37999999
Q ss_pred cCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCCcEEeEEEE
Q psy4818 433 ITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYII 477 (734)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~i~~~~~ 477 (734)
++++...+.+.-.+..++....-.+.++.| +.||.++...+.
T Consensus 457 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~g~~~~~s~~ 498 (543)
T 1nir_A 457 --KNLDAKYQVLPIAEWADLGEGAKRVVQPEY-NKRGDEVWFSVW 498 (543)
T ss_dssp --TCTTSCCEEECHHHHHCCCSSCCEEEEEEE-CSSSSEEEEEEE
T ss_pred --CCCCCCeEEeechhhcccCCCCCceEeccC-CCCCCEEEEEee
Confidence 555322132211111122223335666777 578887765443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-10 Score=117.43 Aligned_cols=240 Identities=11% Similarity=0.064 Sum_probs=138.5
Q ss_pred EEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
..|+++++++..+.... ..|+++|+++|+.+.... +.... .++|+|||+.|+++... ..
T Consensus 3 ~~~~~~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~---------------~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL----RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF---------------CQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGG----TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST---------------TC
T ss_pred eeEcCCCCEEEEEecCC----CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC---------------CC
Confidence 45778888766555433 379999999998644322 22233 88999999988776642 22
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCeeEEE-EEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRSLGLH-SEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD 304 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~ 304 (734)
.|+++++.++... .........+ .. +.|||||++|+ ..........|++||+.++. ....+..+..
T Consensus 63 ~i~~~d~~~~~~~-~~~~~~~~~~---~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~ 129 (331)
T 3u4y_A 63 TLVQIETQLEPPK-VVAIQEGQSS---MADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNK--------FISTIPIPYD 129 (331)
T ss_dssp EEEEEECSSSSCE-EEEEEECSSC---CCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTE--------EEEEEECCTT
T ss_pred eEEEEECCCCcee-EEecccCCCC---ccceEECCCCCEEE-EecCCCCcccEEEEECCCCC--------eEEEEECCCC
Confidence 7999998876431 2222222222 24 79999999998 33222122389999998731 1111212222
Q ss_pred ceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCC-CCc-eEeecCCCCceeEEEEEeeCC-EEEEEEEeCCceeEEEE
Q psy4818 305 HHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCE-KNW-KTLIPEDENRTLDVVAAVANN-KLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 305 ~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~-~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~~~ 381 (734)
.....|+|||+++|+...... . .|.+++++.... ... ..+++.. .....+.+..++ .+++.... ...|++|
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~-~-~i~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~--~~~v~v~ 203 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSA-N-TVRRFKIDADGVLFDTGQEFISGG--TRPFNITFTPDGNFAFVANLI--GNSIGIL 203 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTT-T-EEEEEEECTTCCEEEEEEEEECSS--SSEEEEEECTTSSEEEEEETT--TTEEEEE
T ss_pred ccceEECCCCCEEEEEecCCC-c-eEEEEEECCCCcEeecCCccccCC--CCccceEECCCCCEEEEEeCC--CCeEEEE
Confidence 222249999998887654322 2 256566543220 000 1222222 223444454434 46655433 3579999
Q ss_pred ECCCCce---eeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 382 DLNTGKR---LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 382 dl~~g~~---~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.+++. +..+... ..+..+.++|+++.+++.... ...++.+|+
T Consensus 204 d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~---~~~i~~~d~ 250 (331)
T 3u4y_A 204 ETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTES---TVDVFNFNQ 250 (331)
T ss_dssp ECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSS---EEEEEEEET
T ss_pred ECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcC---CCEEEEEEC
Confidence 9988887 5666543 334567788999877765432 346899999
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-10 Score=120.76 Aligned_cols=240 Identities=8% Similarity=0.066 Sum_probs=149.2
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC--CCCccccc---ccccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD--TGKDYPEV---LKNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~--~g~~~~~~---~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
.+..++|||||++|+++.... ..|.+||+. +++.+... ........++|+|||+.|+....+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--------- 170 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF--------- 170 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---------
T ss_pred ceEEEEEcCCCCEEEEEECCC----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC---------
Confidence 478999999999986666544 369999998 77754432 112234689999999988877532
Q ss_pred cccccCCcEEEEEECCCCCCCC--eeEEecCCCCeeEEEEEEecC---CcEEEEEEecCCCCceEEEEeCCCCCCCcccC
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKD--IPVVEFPNGRSLGLHSEVTDC---GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~--~~v~~~~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
..|+.+++.+..... ...+.. +...+..+.|+|| |++|+.... ...|++||+.++.
T Consensus 171 -------g~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~------ 231 (450)
T 2vdu_B 171 -------GDVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCF------ 231 (450)
T ss_dssp -------SEEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTT------
T ss_pred -------CcEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCc------
Confidence 268889887654322 001111 2235678999999 888875432 2579999998731
Q ss_pred CCCceeee-ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC---------------------
Q psy4818 293 KFPLKTVI-PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE--------------------- 349 (734)
Q Consensus 293 ~~~~~~l~-~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~--------------------- 349 (734)
....+. ......... |+ ||+.|+..+. +..|.+||+.++. ....+..
T Consensus 232 --~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 232 --IVDKWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGK---NLSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp --CEEEECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCC---EEEEEECHHHHGGGCCTTSBC-------
T ss_pred --eeeeeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCc---Eeeeecchhhhhhhhhhccccccccccc
Confidence 122222 222223333 88 8887776553 3579999998765 2222221
Q ss_pred ---CCCceeEEEEEeeCCEEEEEEE-eCCceeEEEEEC--CCC---ceeeeeCCCCceEEeeccCcccceEEEEEecCCC
Q psy4818 350 ---DENRTLDVVAAVANNKLIVHYI-QNVRSVMDLHDL--NTG---KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQ 420 (734)
Q Consensus 350 ---~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~~dl--~~g---~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~ 420 (734)
.....+..+.+..++.+++... .+ ..|++|++ .++ +.+..+..+ +.+..+.++++ .++++.++...
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d--~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~--~~~v~~~~~~~ 376 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEAT--KCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND--EFQVTLDNKES 376 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTC--SEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT--EEEEEECCTTC
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCC--CeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC--cEEEEEecccC
Confidence 1122344455544444444444 33 57888988 555 444555554 56778888873 57778888777
Q ss_pred Cc------eEEEEeC
Q psy4818 421 PG------TIYHCNI 429 (734)
Q Consensus 421 P~------~~~~~d~ 429 (734)
|. .+|.++.
T Consensus 377 ~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 377 SGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSCCCSEEEEEEET
T ss_pred CCCCCcceEEEEEEc
Confidence 75 7888887
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-09 Score=116.66 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=152.4
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..+.|||||++|+-... + ..|++||+.+|+........ ..+..++|+|||+.|+-...+.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~-D----g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~---------- 172 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASE-D----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM---------- 172 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEES-S----SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred CCcEEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC----------
Confidence 345788999999998886543 2 36999999999865432221 2346789999999777666432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|.+|++.+.. .+.....+...+..+.|+|||++|+... ....|.+||+.++. ....+
T Consensus 173 ------~i~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~~~~l~s~s----~D~~i~~wd~~~~~--------~~~~~ 230 (410)
T 1vyh_C 173 ------TIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVSAS----RDKTIKMWEVQTGY--------CVKTF 230 (410)
T ss_dssp ------CCCEEETTSSC----EEECCCCCSSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTCC--------EEEEE
T ss_pred ------eEEEEeCCCCc----eeEEEcCCCCCEEEEEEeCCCCEEEEEe----CCCeEEEEECCCCc--------EEEEE
Confidence 57778876543 2333233444677899999999987432 23689999998731 12223
Q ss_pred eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC---------------
Q psy4818 300 IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN--------------- 363 (734)
Q Consensus 300 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------- 363 (734)
.......... ++++|+.|+..+. +..|..||+.++. ....+... ...+..+.+..+
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~----D~~v~vwd~~~~~---~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSN----DQTVRVWVVATKE---CKAELREH-RHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC---EEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred eCCCccEEEEEECCCCCEEEEEcC----CCeEEEEECCCCc---eeeEecCC-CceEEEEEEcCcccccchhhhcccccc
Confidence 2222222222 7888886665444 2458889987654 23223222 233444444321
Q ss_pred -----CEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 364 -----NKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 -----~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.++++...+ ..|++||+.+|+.+..+....+.|.++.+++++..++ +.+.. ..+..||+
T Consensus 303 ~~~~~g~~l~sgs~D--~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~D---~~i~vwd~ 367 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRD--KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADD---KTLRVWDY 367 (410)
T ss_dssp -----CCEEEEEETT--SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEETT---TEEEEECC
T ss_pred ccCCCCCEEEEEeCC--CeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE-EEeCC---CeEEEEEC
Confidence 3456666665 4799999988988777776666777888888887655 33332 47999998
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-10 Score=120.98 Aligned_cols=202 Identities=10% Similarity=0.116 Sum_probs=121.2
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECC--CCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEE
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLG--TEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVS 267 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~ 267 (734)
+..++|||||+.|+++...+ ..|.+|++. ++. .+..+...........+.|+|||++|+..
T Consensus 105 v~~~~~s~d~~~l~~~~~~d---------------g~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSD---------------KSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGG---------------TEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCC---------------CeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 45789999999987766322 267888877 443 22333221223356789999999999865
Q ss_pred EecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEec---CCeEEEEeCCCCCCceEEEEecCCCCCCCc
Q psy4818 268 TSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANN---GPELIVKTTKNAPKGKVVTINLNNPCEKNW 343 (734)
Q Consensus 268 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~d---g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 343 (734)
.. ...++++++.++.... .....+.......... |+|+ ++.|+..+. +..|.+||+.++.. .
T Consensus 168 ~~----~g~v~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~--~ 233 (450)
T 2vdu_B 168 DK----FGDVYSIDINSIPEEK----FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFI--V 233 (450)
T ss_dssp ET----TSEEEEEETTSCCCSS----CCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTC--E
T ss_pred eC----CCcEEEEecCCccccc----ccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCce--e
Confidence 32 2579999998732210 0111222222333333 9999 665554443 24588899876641 2
Q ss_pred eEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-------------------------Cce
Q psy4818 344 KTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-------------------------LGQ 398 (734)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-------------------------~g~ 398 (734)
..+.... ...+..+.+. ++.++++...+ ..|.+||+.+|+.+..+... ...
T Consensus 234 ~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 234 DKWLFGH-KHFVSSICCG-KDYLLLSAGGD--DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EEECCCC-SSCEEEEEEC-STTEEEEEESS--SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeeecCC-CCceEEEEEC-CCCEEEEEeCC--CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 2323222 3344555555 46666666655 48999999989876666421 234
Q ss_pred EEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 399 ITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 399 v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+.++++++.+++.... -..+++|++
T Consensus 310 v~~i~~~~~~~~l~~~~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEA---TKCIIILEM 337 (450)
T ss_dssp EEEEEECSSSSEEEEEETT---CSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECC---CCeEEEEEe
Confidence 6677788888766655422 246888887
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-09 Score=113.36 Aligned_cols=235 Identities=9% Similarity=0.031 Sum_probs=149.6
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc------ccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV------LKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~------~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
.+..++|||||++|+... . ..|++||+.+++..... ........+.|+||++.|+....+.
T Consensus 53 ~v~~~~~~~~~~~l~~~~--d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 119 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG--K----GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS------- 119 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--B----SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-------
T ss_pred ceEEEEEecCCcEEEEcC--C----CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-------
Confidence 467899999999998764 2 46999999887632211 1222346789999999888776432
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
.|+++++.++.......+. .+......+.|+|||++|+.... ...|++||+.++. ..
T Consensus 120 ---------~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~--------~~ 176 (337)
T 1gxr_A 120 ---------TLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCS----DGNIAVWDLHNQT--------LV 176 (337)
T ss_dssp ---------EEEEEECCCC--EEEEEEE--CSSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE--------EE
T ss_pred ---------cEEEEECCCCCcceeeecc--cCCCceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCc--------ee
Confidence 6889998876432222222 22334668899999999886442 2579999998721 11
Q ss_pred eeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 297 KTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
..+.......... |+|+++.|+..+. +..|..+|+.++. ....+... ..+..+.+..++.+++....+
T Consensus 177 ~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~---~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~-- 245 (337)
T 1gxr_A 177 RQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGR---QLQQHDFT--SQIFSLGYCPTGEWLAVGMES-- 245 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTE---EEEEEECS--SCEEEEEECTTSSEEEEEETT--
T ss_pred eeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCc---eEeeecCC--CceEEEEECCCCCEEEEEcCC--
Confidence 2222222223333 8999988776554 3469999998764 22223322 334455554445555555544
Q ss_pred eeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 376 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+++||+.+++. ..+....+.+..+.++++++.++... . -..+..||+
T Consensus 246 ~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~---dg~i~~~~~ 294 (337)
T 1gxr_A 246 SNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTG-K---DNLLNAWRT 294 (337)
T ss_dssp SCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEE-T---TSEEEEEET
T ss_pred CcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEec-C---CCcEEEEEC
Confidence 4699999977665 44554556677888899887655433 2 247999998
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-13 Score=135.79 Aligned_cols=104 Identities=15% Similarity=-0.002 Sum_probs=74.3
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|+||++||.........|.. +...|+ +||.|+++|+||.|... .......+++++...+..+++.- ..
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~-~~~~L~-~~~~vi~~D~~G~G~S~-------~~~~~~~~~~~~~~~l~~~l~~~--~~ 109 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFAN-IIDKLP-DSIGILTIDAPNSGYSP-------VSNQANVGLRDWVNAILMIFEHF--KF 109 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHH-HHTTSC-TTSEEEEECCTTSTTSC-------CCCCTTCCHHHHHHHHHHHHHHS--CC
T ss_pred CCEEEEEcCCCCCcHHHHHHH-HHHHHh-hcCeEEEEcCCCCCCCC-------CCCcccccHHHHHHHHHHHHHHh--CC
Confidence 489999997311111123333 335565 59999999999965432 01123456788888777777653 34
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
+++.++|||+||.+++.++.++|++++++|+..|.
T Consensus 110 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 144 (292)
T 3l80_A 110 QSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPT 144 (292)
T ss_dssp SEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCC
T ss_pred CCeEEEEEchhHHHHHHHHHhCchheeeEEEECCC
Confidence 58999999999999999999999999999998853
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-10 Score=130.72 Aligned_cols=237 Identities=11% Similarity=0.082 Sum_probs=154.3
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+..++|||||++||.+.. + ..|.+||+.+|+.+... .....+..++|+|||+.|+....+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~-~----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------ 77 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLY-S----GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF------------ 77 (814)
T ss_dssp CEEEEEECSSSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS------------
T ss_pred ceEEEEECCCCCEEEEEeC-C----CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC------------
Confidence 4788999999999998763 2 36999999998754322 2223346899999999998876432
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI- 300 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~- 300 (734)
.|.+|++.++.. +..+. .+...+..+.|||||++|+.... ...|.+|++.++ .......
T Consensus 78 ----~i~vw~~~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vw~~~~~--------~~~~~~~~ 137 (814)
T 3mkq_A 78 ----RIRVFNYNTGEK--VVDFE--AHPDYIRSIAVHPTKPYVLSGSD----DLTVKLWNWENN--------WALEQTFE 137 (814)
T ss_dssp ----EEEEEETTTCCE--EEEEE--CCSSCEEEEEECSSSSEEEEEET----TSEEEEEEGGGT--------SEEEEEEE
T ss_pred ----eEEEEECCCCcE--EEEEe--cCCCCEEEEEEeCCCCEEEEEcC----CCEEEEEECCCC--------ceEEEEEc
Confidence 789999887642 22232 23446778999999999885432 257999998772 1122222
Q ss_pred ccccceEEE-EEe-cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee--CCEEEEEEEeCCce
Q psy4818 301 PGMDHHHEI-IAN-NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA--NNKLIVHYIQNVRS 376 (734)
Q Consensus 301 ~~~~~~~~~-~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 376 (734)
......... |+| +++.|+..+. +..|..+|+.++.. ...+..+. ...+..+.+.. ++.++++...+ .
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~----dg~v~vwd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d--g 208 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCL----DRTVKVWSLGQSTP--NFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDD--L 208 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEET----TSEEEEEETTCSSC--SEEEECCC-TTCCCEEEECCSTTCCEEEEECTT--S
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcc--eeEEecCC-CCCEEEEEEEECCCCCEEEEEeCC--C
Confidence 222223333 899 6666665444 24699999876542 23333322 23334444432 35566666555 4
Q ss_pred eEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|.+||+.+++.+..+....+.+..+.++++++.++... . -..+..||+
T Consensus 209 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---dg~v~vwd~ 257 (814)
T 3mkq_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-E---DGTLKIWNS 257 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-T---TSCEEEEET
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---CCeEEEEEC
Confidence 799999988887777776666788888999887555433 2 246888998
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-09 Score=111.87 Aligned_cols=239 Identities=12% Similarity=0.112 Sum_probs=149.3
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++|||||++|+.... + ..|++||+.+++.+.... ....+..++|+||++.|+....+.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg----------- 96 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSK-D----SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY----------- 96 (369)
T ss_dssp SCEEEEEECTTSCEEEEEES-S----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTT-----------
T ss_pred ceEEEEEEcCCCCEEEEEeC-C----CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC-----------
Confidence 44889999999999987653 2 369999999988644322 222346899999999888766432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecC-CCCceEEEEeCCCCCCCc-cc--CCCCc
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNN-TQGSDLHYFDLHSLPDGK-IS--GKFPL 296 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~-~~~~~i~~~d~~~~~~~~-l~--~~~~~ 296 (734)
.|++|++.++.. +..+. .......+.|+|||++|+...... .....|.+||+.++.... +. .....
T Consensus 97 -----~i~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 97 -----SIKLWDVSNGQC--VATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp -----EEEEEETTTCCE--EEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred -----eEEEEECCCCcE--EEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 789999887642 22333 223467899999999998765431 112678889887632111 00 00111
Q ss_pred eeeecccc--ceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 297 KTVIPGMD--HHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 297 ~~l~~~~~--~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
..+..... .... .|+++++.|+..+. +..|..+|+.+.. .....+... ...+..+.+..++.++++...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHK----DGKISKYDVSNNY--EYVDSIDLH-EKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEET----TSEEEEEETTTTT--EEEEEEECC-SSCEEEEEECTTSSEEEEEETT
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcC----CCEEEEEECCCCc--EeEEEEecC-CCceeEEEECCCCCEEEEecCC
Confidence 12221111 2223 38999998776554 3469999997632 122233322 2345555555445556666555
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEe
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~s 416 (734)
..|++||+.+++.+..+.. ...+..+.+++++..+++...
T Consensus 240 --~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 240 --TNSFLVDVSTLQVLKKYET-DCPLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp --SEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEEC
T ss_pred --ceEEEEECCCCceeeeecC-CCCceeEEecCCCceEEEeec
Confidence 4799999988887776663 344667888888877776544
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=122.96 Aligned_cols=121 Identities=14% Similarity=0.027 Sum_probs=88.7
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhc---------CeEEEEEecccCCCCCchhh
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF---------NGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~---------G~~v~~~~~rG~~~~g~~~~ 537 (734)
.||..|+...+.+.+ +..|.||++||.+++... |.. +...|.+. ||.|+++|+||.|... .
T Consensus 75 i~g~~i~~~~~~~~~----~~~~plll~HG~~~s~~~--~~~-~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~---~ 144 (388)
T 4i19_A 75 IDGATIHFLHVRSPE----PDATPMVITHGWPGTPVE--FLD-IIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSG---P 144 (388)
T ss_dssp ETTEEEEEEEECCSS----TTCEEEEEECCTTCCGGG--GHH-HHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGC---C
T ss_pred ECCeEEEEEEccCCC----CCCCeEEEECCCCCCHHH--HHH-HHHHHhCcccccCCCCCCeEEEEEcCCCCCCCC---C
Confidence 488888877665543 456789999998876543 333 34566654 9999999999944322 1
Q ss_pred hccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
. ......++++...+..|+++ +..++++++|||+||+++..++.++|+.++++|+..|+.
T Consensus 145 ~----~~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 145 L----KSAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp C----SSCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred C----CCCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 1 11134677887777777665 344689999999999999999999999999999988643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-10 Score=121.35 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=142.2
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc---c--cccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---L--KNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
..+..++||||++.|+- . ..| .|++||+.+++.+... . ....+..++|+|||+.|+....+.
T Consensus 95 ~~V~~~~~s~d~~~l~~-s-~dg----~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg------- 161 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVA-S-DSG----AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF------- 161 (357)
T ss_dssp SCEEEEEEETTTEEEEE-E-TTS----CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-------
T ss_pred CCEEEEEEcCCCCEEEE-E-CCC----EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-------
Confidence 34788999999987652 2 223 5999999988743211 1 112246789999999888766432
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
.|.+|++.++. .+..+. .+...+..++|+|+++.++++... ...|.+||+.++.... .
T Consensus 162 ---------~v~iwd~~~~~--~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~---dg~v~~wd~~~~~~~~------~ 219 (357)
T 4g56_B 162 ---------SVKVWDLSQKA--VLKSYN--AHSSEVNCVAACPGKDTIFLSCGE---DGRILLWDTRKPKPAT------R 219 (357)
T ss_dssp ---------CEEEEETTTTE--EEEEEC--CCSSCEEEEEECTTCSSCEEEEET---TSCEEECCTTSSSCBC------B
T ss_pred ---------eEEEEECCCCc--EEEEEc--CCCCCEEEEEEccCCCceeeeecc---CCceEEEECCCCceee------e
Confidence 58888887653 122222 233456789999999866555443 2579999998732110 0
Q ss_pred eeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCC
Q psy4818 297 KTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNV 374 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 374 (734)
............. |+|++..++..... +..|..+|+.++.. ...+ ... ...+..+.+. +++.++++...+
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~wd~~~~~~--~~~~-~~~-~~~v~~l~~sp~~~~~lasgs~D- 291 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLVNIKNPDS--AQTS-AVH-SQNITGLAYSYHSSPFLASISED- 291 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEEESSCGGG--CEEE-CCC-SSCEEEEEECSSSSCCEEEEETT-
T ss_pred eeeccccccccchhhhhcccceEEEeec---ccceeEEECCCCcE--eEEE-ecc-ceeEEEEEEcCCCCCEEEEEeCC-
Confidence 0011111122233 88987766655443 34588999987652 2333 322 2344555554 445677777666
Q ss_pred ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIP 430 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~ 430 (734)
..|++||+.+++.++.+ ...+.|.++.++|.+..++++.+.. ..+.++|+.
T Consensus 292 -~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~D---g~v~iW~~~ 342 (357)
T 4g56_B 292 -CTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWD---HKVLHHHLP 342 (357)
T ss_dssp -SCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECC
T ss_pred -CEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCC---CeEEEEECC
Confidence 46999999888876555 3456788899998444455555543 368889983
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-09 Score=112.49 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=143.2
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+..++|||||++||.... . ..|++||+++++.+.... ....+..++|+|||+.|+....+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~------------ 187 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAE-D----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR------------ 187 (393)
T ss_dssp BEEEEEECTTSSEEEEEET-T----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------------
T ss_pred eEEEEEECCCCCEEEEEcC-C----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCC------------
Confidence 3778999999999986653 2 369999999987543222 222346899999999887665432
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee-
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV- 299 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l- 299 (734)
.|.+|++.++.. ...+... .....+.|+| ||++|+.... ...|.+||+.++. ....+
T Consensus 188 ----~v~iwd~~~~~~--~~~~~~~---~~v~~~~~~~~~~~~l~~~s~----d~~v~iwd~~~~~--------~~~~~~ 246 (393)
T 1erj_A 188 ----TVRIWDLRTGQC--SLTLSIE---DGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGF--------LVERLD 246 (393)
T ss_dssp ----EEEEEETTTTEE--EEEEECS---SCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCC--------EEEEEC
T ss_pred ----cEEEEECCCCee--EEEEEcC---CCcEEEEEECCCCCEEEEEcC----CCcEEEEECCCCc--------EEEeec
Confidence 788999877542 2222221 2356789999 8998875432 2578999998732 11111
Q ss_pred ------eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC---------CceEeecCCCCceeEEEEEeeC
Q psy4818 300 ------IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK---------NWKTLIPEDENRTLDVVAAVAN 363 (734)
Q Consensus 300 ------~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---------~~~~l~~~~~~~~~~~~~~~~~ 363 (734)
.......... |+|+|+.|+..+. +..|..||+.+.... .....+... ...+..+.+..+
T Consensus 247 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~ 321 (393)
T 1erj_A 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQN 321 (393)
T ss_dssp ------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGG
T ss_pred ccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCC
Confidence 1112223333 8999987765443 346888888653210 011111121 223344445444
Q ss_pred CEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCc------ccceEEEEEecCCCCceEEEEeC
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR------KYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~------d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+++...+ ..|++||+.+|+.+..+....+.|..+.+++ ++ .++++.+.. ..+.++++
T Consensus 322 ~~~l~sgs~D--~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~-~~l~sgs~D---g~i~iW~~ 387 (393)
T 1erj_A 322 DEYILSGSKD--RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGD---CKARIWKY 387 (393)
T ss_dssp GCEEEEEETT--SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC-EEEEEEETT---SEEEEEEE
T ss_pred CCEEEEEeCC--CeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC-CEEEEECCC---CcEEECcc
Confidence 5666666666 4799999998988777776656666665554 33 344554443 35777766
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-09 Score=115.79 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=150.4
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
..++|||||++|+..... ..|++||+.+++...............|+|||+.|+....+.
T Consensus 60 ~~~~~s~~g~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------- 119 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLD-----GHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEG--------------- 119 (420)
T ss_dssp TTCEEEEEETTEEEEEET-----TEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTS---------------
T ss_pred cceeeeecCCeEEEEEcC-----CcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCC---------------
Confidence 468999999999977653 379999999887543222222124457899999988776432
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD 304 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~ 304 (734)
.|.+|++.++. .+.....+...+..+.|+|||++|+.... ...|++||+.++. ....+.....
T Consensus 120 -~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~----d~~i~iwd~~~~~--------~~~~~~~h~~ 182 (420)
T 3vl1_A 120 -DIKVLDSNFNL----QREIDQAHVSEITKLKFFPSGEALISSSQ----DMQLKIWSVKDGS--------NPRTLIGHRA 182 (420)
T ss_dssp -CEEEECTTSCE----EEEETTSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC--------CCEEEECCSS
T ss_pred -CEEEEeCCCcc----eeeecccccCccEEEEECCCCCEEEEEeC----CCeEEEEeCCCCc--------CceEEcCCCC
Confidence 58888877542 22222234446778999999998875432 2589999998732 2233333333
Q ss_pred ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-CCceeEEEEE---------------------e
Q psy4818 305 HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-ENRTLDVVAA---------------------V 361 (734)
Q Consensus 305 ~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~---------------------~ 361 (734)
..... |+|+++.|+..+.. ..|..||+.++.. ...+.... ....+..+.+ .
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLD----GTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp CEEEEEEETTTTEEEEEETT----SCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred cEEEEEEcCCCCEEEEEcCC----CcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 33443 99999988765543 4588999876541 12222111 1122222222 2
Q ss_pred eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 362 ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++.++++...+ ..|.+||+.+++.+..+... .+.+..+.+++++..++++.+.. ..++.||+
T Consensus 257 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---g~i~vwd~ 320 (420)
T 3vl1_A 257 TYGKYVIAGHVS--GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN---GMLAQWDL 320 (420)
T ss_dssp CTTEEEEEEETT--SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT---SEEEEEET
T ss_pred CCCCEEEEEcCC--CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC---CeEEEEEc
Confidence 235666666655 46999999888876666543 56678889999987455554433 47999999
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-09 Score=114.60 Aligned_cols=236 Identities=10% Similarity=0.070 Sum_probs=139.9
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-------------------ccccCeeEEEcCCcEEE
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-------------------NVKFPSISWTHDHKGFF 203 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-------------------~~~~~~~~wSpDg~~l~ 203 (734)
.+..++|||||++||...+ ..+.+|++.+|+.+..... ...+..++|||||+.|+
T Consensus 66 ~V~~v~fspdg~~la~g~~------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CCCEEEECTTSSEEEEECB------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCEEEEEcC------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 3678999999999997542 2588899988874321110 01135789999999888
Q ss_pred EEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC
Q psy4818 204 YNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH 283 (734)
Q Consensus 204 y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~ 283 (734)
....+. .|++|++.+.. .+..+. .+...+..+.|+|||++|+... ....|.+||+.
T Consensus 140 s~~~d~----------------~i~iwd~~~~~--~~~~~~--~h~~~v~~~~~~p~~~~l~s~s----~d~~v~iwd~~ 195 (393)
T 1erj_A 140 TGAEDR----------------LIRIWDIENRK--IVMILQ--GHEQDIYSLDYFPSGDKLVSGS----GDRTVRIWDLR 195 (393)
T ss_dssp EEETTS----------------CEEEEETTTTE--EEEEEC--CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETT
T ss_pred EEcCCC----------------eEEEEECCCCc--EEEEEc--cCCCCEEEEEEcCCCCEEEEec----CCCcEEEEECC
Confidence 766432 68889987653 122232 2344567899999999987433 22689999998
Q ss_pred CCCCCcccCCCCceeeeccccceEE-EEEe-cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec-----CCCCceeE
Q psy4818 284 SLPDGKISGKFPLKTVIPGMDHHHE-IIAN-NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP-----EDENRTLD 356 (734)
Q Consensus 284 ~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-----~~~~~~~~ 356 (734)
++. ............. .|+| +|+.|+..+. +..|..+|+.++.. ...+.. ......+.
T Consensus 196 ~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~ 260 (393)
T 1erj_A 196 TGQ---------CSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFL--VERLDSENESGTGHKDSVY 260 (393)
T ss_dssp TTE---------EEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCE--EEEEC------CCCSSCEE
T ss_pred CCe---------eEEEEEcCCCcEEEEEECCCCCEEEEEcC----CCcEEEEECCCCcE--EEeecccccCCCCCCCCEE
Confidence 731 1111122222222 3788 6776665443 24588899876541 122211 11123455
Q ss_pred EEEEeeCCEEEEEEEeCCceeEEEEECCCCce------------eeeeCCCCceEEeeccCcccceEEEEEecCCCCceE
Q psy4818 357 VVAAVANNKLIVHYIQNVRSVMDLHDLNTGKR------------LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTI 424 (734)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~------------~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~ 424 (734)
.+.+..++.++++...+ ..|.+||+.+++. ...+......+..+.+++++..++ +.+.. ..+
T Consensus 261 ~v~~~~~g~~l~s~s~d--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D---~~v 334 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLD--RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKD---RGV 334 (393)
T ss_dssp EEEECTTSSEEEEEETT--SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEETT---SEE
T ss_pred EEEECCCCCEEEEEeCC--CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeCC---CeE
Confidence 56665556667777666 4788999865332 122323344566777888775444 44332 478
Q ss_pred EEEeC
Q psy4818 425 YHCNI 429 (734)
Q Consensus 425 ~~~d~ 429 (734)
+.||+
T Consensus 335 ~iwd~ 339 (393)
T 1erj_A 335 LFWDK 339 (393)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99998
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-09 Score=120.23 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=145.8
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++|||||++||..... ..|.+||.. ++.+. ..........++|||||+.|+....+.
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~d-----g~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~----------- 407 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDD-----KTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK----------- 407 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----SEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----------
T ss_pred CCEEEEEECCCCCEEEEEeCC-----CEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC-----------
Confidence 346789999999999876532 368999964 44322 222222346789999999988766432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|++++.... ++.....+...+..++||||+++|+.... ...|.+|++.+ .....+.
T Consensus 408 -----~v~~~~~~~~-----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----d~~v~~w~~~~---------~~~~~~~ 464 (577)
T 2ymu_A 408 -----TVKLWNRNGQ-----LLQTLTGHSSSVWGVAFSPDDQTIASASD----DKTVKLWNRNG---------QLLQTLT 464 (577)
T ss_dssp -----EEEEECTTCC-----EEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTS---------CEEEEEE
T ss_pred -----EEEEEeCCCC-----EEEEecCCCCCeEEEEECCCCCEEEEEcC----CCEEEEEECCC---------CEEEEEc
Confidence 5777775332 12222223335668999999999885432 25789999765 1123333
Q ss_pred ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 301 PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 301 ~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
......... |+|||+.|+..+. +..|..++.++.. ...+..+. ..+..+.+..++.++++...++ .|+
T Consensus 465 ~~~~~v~~~~~spd~~~las~~~----d~~i~iw~~~~~~---~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg--~v~ 533 (577)
T 2ymu_A 465 GHSSSVRGVAFSPDGQTIASASD----DKTVKLWNRNGQL---LQTLTGHS--SSVRGVAFSPDGQTIASASDDK--TVK 533 (577)
T ss_dssp CCSSCEEEEEECTTSCEEEEEET----TSEEEEEETTSCE---EEEEECCS--SCEEEEEECTTSSCEEEEETTS--EEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeC----CCEEEEEcCCCCE---EEEEeCCC--CCEEEEEEcCCCCEEEEEECcC--EEE
Confidence 333333333 9999998775544 3468889975432 33333332 3445555555566677776664 799
Q ss_pred EEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEe
Q psy4818 380 LHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCN 428 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d 428 (734)
+||. +|+.+..+..+.+.|..+.++||++.++ +.+.. ..+..||
T Consensus 534 lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~-s~~~D---~~i~~Wd 577 (577)
T 2ymu_A 534 LWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA-SASSD---KTVKLWN 577 (577)
T ss_dssp EECT-TSCEEEEEECCSSCEEEEEECTTSSCEE-EEETT---SCEEEEC
T ss_pred EEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE-EEeCC---CEEEEeC
Confidence 9997 7887788877777788899999987664 43332 2466654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-09 Score=108.95 Aligned_cols=238 Identities=10% Similarity=0.053 Sum_probs=147.2
Q ss_pred cEEEeeEEeCCC----CcEEEEEEeCCCCceEEEEEEECCCCCcc-cccc--cccccCeeEEEcCCcEEEEEEEecCCCC
Q psy4818 141 TTALKLYAFSDN----GKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PEVL--KNVKFPSISWTHDHKGFFYNQYCDINGT 213 (734)
Q Consensus 141 ~~~~~~~~~SPD----G~~la~~~~~~g~~~~~l~v~dl~~g~~~-~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~ 213 (734)
...+..++|||+ +++|+-.. .. ..|.+||+.+++.. ..+. ....+..+.|+|+++.++-...+.
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs-~D----~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~---- 102 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGS-LD----DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA---- 102 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEE-TT----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS----
T ss_pred CCcEEEEEEecCCCCCCCEEEEEc-CC----CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC----
Confidence 345788999986 45565433 22 36889998776531 1111 112236789999998776655432
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.+|++.++.. +..+.. .......+.|+|||++|+... ....|.+|++.++.
T Consensus 103 ------------~i~lWd~~~~~~--~~~~~~--~~~~~~~~~~spdg~~l~~g~----~dg~v~i~~~~~~~------- 155 (321)
T 3ow8_A 103 ------------HIRLWDLENGKQ--IKSIDA--GPVDAWTLAFSPDSQYLATGT----HVGKVNIFGVESGK------- 155 (321)
T ss_dssp ------------EEEEEETTTTEE--EEEEEC--CTTCCCCEEECTTSSEEEEEC----TTSEEEEEETTTCS-------
T ss_pred ------------cEEEEECCCCCE--EEEEeC--CCccEEEEEECCCCCEEEEEc----CCCcEEEEEcCCCc-------
Confidence 788999877532 222222 122334689999999988532 23689999998731
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
....+.......... |+|||+.|+..+.. ..|..+|+.++. ....+... ...+..+.+..++.++++...
T Consensus 156 -~~~~~~~~~~~v~~~~~spdg~~lasg~~d----g~i~iwd~~~~~---~~~~~~~h-~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 156 -KEYSLDTRGKFILSIAYSPDGKYLASGAID----GIINIFDIATGK---LLHTLEGH-AMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp -EEEEEECSSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTE---EEEEECCC-SSCCCEEEECTTSCEEEEECT
T ss_pred -eeEEecCCCceEEEEEECCCCCEEEEEcCC----CeEEEEECCCCc---EEEEEccc-CCceeEEEEcCCCCEEEEEcC
Confidence 112222222222333 99999988765543 458899998764 22223322 234455556555667777666
Q ss_pred CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ ..|.+||+.+++....+....+.+..+.++|++..++ +.+.. ..+.++|+
T Consensus 227 d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-s~s~D---~~v~iwd~ 277 (321)
T 3ow8_A 227 D--GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFV-SSSSD---KSVKVWDV 277 (321)
T ss_dssp T--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETT---SCEEEEET
T ss_pred C--CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEE-EEeCC---CcEEEEeC
Confidence 5 4699999988887777776666788889999887554 33332 36899998
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-10 Score=122.01 Aligned_cols=247 Identities=8% Similarity=0.041 Sum_probs=149.3
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC---CC-ccc-ccccccccCeeEEEcC-CcEEEEEEEecCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT---GK-DYP-EVLKNVKFPSISWTHD-HKGFFYNQYCDINGTAD 215 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~---g~-~~~-~~~~~~~~~~~~wSpD-g~~l~y~~~~~~~~~~~ 215 (734)
..+..++|||||++|+..... ..|++||+.+ +. .+. .......+..+.|+|| ++.|+....+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------- 135 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDN-----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN------- 135 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESS-----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS-------
T ss_pred CceEEEEECCCCCeEEEEccC-----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC-------
Confidence 457899999999999876542 3599999987 22 222 1122223478999999 6655544322
Q ss_pred CCcccccCCcEEEEEECCCCCC-----CCeeEEecCCCCeeEEEEEEecCC-cEEEEEEecCCCCceEEEEeCCCCCCCc
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQD-----KDIPVVEFPNGRSLGLHSEVTDCG-RYLLVSTSNNTQGSDLHYFDLHSLPDGK 289 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~-----~~~~v~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 289 (734)
..|++|++.+... ....+.....+...+..+.|+||+ +.|+ +.. ....|.+||+.++.
T Consensus 136 ---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~---~dg~v~iwd~~~~~--- 199 (416)
T 2pm9_A 136 ---------GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA-SAG---SSNFASIWDLKAKK--- 199 (416)
T ss_dssp ---------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEE-EES---SSSCEEEEETTTTE---
T ss_pred ---------CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEE-EEc---CCCCEEEEECCCCC---
Confidence 2688888877641 011110111223345678999995 5554 332 22579999998721
Q ss_pred ccCCCCceeeecc------ccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec-CCCCceeEEEEEe
Q psy4818 290 ISGKFPLKTVIPG------MDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP-EDENRTLDVVAAV 361 (734)
Q Consensus 290 l~~~~~~~~l~~~------~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 361 (734)
....+... ....... |+|++..+++....++....|..+|+.+... ....+. .. ...+..+.+.
T Consensus 200 -----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--~~~~~~~~~-~~~v~~~~~s 271 (416)
T 2pm9_A 200 -----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--PLQTLNQGH-QKGILSLDWC 271 (416)
T ss_dssp -----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--CSBCCCSCC-SSCEEEEEEC
T ss_pred -----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--CcEEeecCc-cCceeEEEeC
Confidence 11112111 1222333 9999866655555443334688899876431 122222 22 2344555554
Q ss_pred e-CCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 362 A-NNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 362 ~-~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. ++.++++...+ ..|++||+.+++.+..+....+.+..+.+++++..++++.+.. ..+.+||+
T Consensus 272 ~~~~~~l~s~~~d--g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---~~i~iw~~ 335 (416)
T 2pm9_A 272 HQDEHLLLSSGRD--NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD---NKIEVQTL 335 (416)
T ss_dssp SSCSSCEEEEESS--SEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS---SEEEEEES
T ss_pred CCCCCeEEEEeCC--CCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC---CcEEEEEc
Confidence 3 46667776666 4799999988988777776666677888899885566555443 47899998
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-09 Score=105.25 Aligned_cols=238 Identities=7% Similarity=-0.011 Sum_probs=145.7
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+....|+|||++|+-... ...|++||+.+|+.+.... ....+..++|+||++.|+-...+.
T Consensus 57 ~v~~~~~~~~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~------------ 119 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSD-----DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL------------ 119 (304)
T ss_dssp CEEEEEEEGGGTEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS------------
T ss_pred cEEEEEEeCCCCEEEEECC-----CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCC------------
Confidence 4778999999999986553 2479999999998643222 222346899999999887655432
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|.+|++.++.. ....+. .+...+..++|+| |++.|+- .. ....|.+||+.++. ....+.
T Consensus 120 ----~v~lWd~~~~~~-~~~~~~--~h~~~v~~v~~~p~~~~~l~s-gs---~D~~v~iwd~~~~~--------~~~~~~ 180 (304)
T 2ynn_A 120 ----TVKLWNWENNWA-LEQTFE--GHEHFVMCVAFNPKDPSTFAS-GC---LDRTVKVWSLGQST--------PNFTLT 180 (304)
T ss_dssp ----CEEEEEGGGTTE-EEEEEC--CCCSCEEEEEECTTCTTEEEE-EE---TTSEEEEEETTCSS--------CSEEEE
T ss_pred ----eEEEEECCCCcc-hhhhhc--ccCCcEEEEEECCCCCCEEEE-Ee---CCCeEEEEECCCCC--------ccceec
Confidence 688888876421 111222 2344677899999 5676663 22 22689999997621 222232
Q ss_pred ccccceEE--EEEe--cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 301 PGMDHHHE--IIAN--NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 301 ~~~~~~~~--~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
.+...... .+++ ++..|+-.+. +..|..||+.++. ....+... ...+..+.+..++.++++...+ .
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~~---~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~D--g 250 (304)
T 2ynn_A 181 TGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS---CVATLEGH-MSNVSFAVFHPTLPIIISGSED--G 250 (304)
T ss_dssp CCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTTE---EEEEEECC-SSCEEEEEECSSSSEEEEEETT--S
T ss_pred cCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCCc---cceeeCCC-CCCEEEEEECCCCCEEEEEcCC--C
Confidence 22222222 2555 5555554333 3569999998764 22223332 2344555555546677777766 4
Q ss_pred eEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 377 VMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|.+||+.+++.++.+......+..+.++|++...++...+. ..+..+++
T Consensus 251 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~---~g~~~~~~ 300 (304)
T 2ynn_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD---NGFTVLSL 300 (304)
T ss_dssp CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET---TEEEEEEC
T ss_pred eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC---CceEEEEe
Confidence 799999998988888876655566777777765443333322 24555665
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-10 Score=121.38 Aligned_cols=257 Identities=11% Similarity=0.077 Sum_probs=149.4
Q ss_pred EEeeEEeCCCCcEEEEEEeCCC------CceEEEEEEECCCCCc---ccccccccccCeeEEEcCCcEEEEEEEecCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSG------SDWNTLHIKDVDTGKD---YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGT 213 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g------~~~~~l~v~dl~~g~~---~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~ 213 (734)
.+..++|||||+.++++.+..| +....|++||+.+++. +........+..++|+|||+.|+....+.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---- 89 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG---- 89 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS----
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC----
Confidence 3567899999985554543333 4456899999998752 22222233446899999999888776432
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC-CcEEEEEEecCCCCceEEEEeCCCCCCCccc-
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC-GRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS- 291 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~- 291 (734)
.|.++++.+.......+.....+...+..+.|+|| +++|+. .. ....|++||+.++......
T Consensus 90 ------------~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~---~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 90 ------------SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS-GG---NNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp ------------CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE-EC---SSSCEEBCBTTTTSSCTTTC
T ss_pred ------------eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE-Ec---CCCeEEEEECCCCccccccc
Confidence 58888887632212133333333445567899999 676653 22 2257999999873210000
Q ss_pred CCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC-----CceeEEEEEeeC-C
Q psy4818 292 GKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE-----NRTLDVVAAVAN-N 364 (734)
Q Consensus 292 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~-~ 364 (734)
................. .|+|++..+++.... +..|..+|+.++. ....+.... ...+..+.+..+ .
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS---SNFASIWDLKAKK---EVIHLSYTSPNSGIKQQLSVVEWHPKNS 227 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---SSCEEEEETTTTE---EEEEECCCCCSSCCCCCEEEEEECSSCT
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcC---CCCEEEEECCCCC---cceEEeccccccccCCceEEEEECCCCC
Confidence 00000001112222233 389996555555543 3459999998754 222222211 234555555543 3
Q ss_pred EEEEEEEeCC-ceeEEEEECCCC-ceeeeeC-CCCceEEeeccCc-ccceEEEEEecCCCCceEEEEeC
Q psy4818 365 KLIVHYIQNV-RSVMDLHDLNTG-KRLHSFP-LDLGQITHISGRR-KYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 365 ~l~~~~~~~~-~~~l~~~dl~~g-~~~~~l~-~~~g~v~~~~~~~-d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+++....++ ...|++||+.++ +....+. .....+..+.+++ ++. ++++.+.. ..+..||+
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~d---g~v~~wd~ 292 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRD---NTVLLWNP 292 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESS---SEEEEECS
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCC---CCEEEeeC
Confidence 5666665553 237999999776 4445555 4556677888888 554 44444432 46999998
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-12 Score=139.75 Aligned_cols=223 Identities=16% Similarity=0.157 Sum_probs=131.5
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHH-H-HHHH-HhcCeEEEEEecccCCCCCchhhhcc---cccc
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSIS-R-CMFL-RHFNGIYAIPNIRGGGELGEDWHNAG---RLLK 544 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~-~-~~~l-~~~G~~v~~~~~rG~~~~g~~~~~~~---~~~~ 544 (734)
+.+.++.|+....+++.|+||++|||...... ..+... + ...+ ...|++|+.+|||.+. +| |.... ....
T Consensus 106 l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~g--f~~~~~~~~~~~ 182 (544)
T 1thg_A 106 LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FG--FLGGDAITAEGN 182 (544)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HH--HCCSHHHHHHTC
T ss_pred eEEEEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-cc--CCCcccccccCC
Confidence 56677889765445678999999998543322 233321 1 1112 2348999999999754 22 11100 0112
Q ss_pred CCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcC--------CCceeEEEEcCCcchhcccccccc
Q psy4818 545 KQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQR--------PELYGAALILVGALDMLRFNKFTI 613 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~--------p~~~~a~v~~~~~~d~~~~~~~~~ 613 (734)
+...+.|+.+|++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|............
T Consensus 183 ~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~~~~~ 262 (544)
T 1thg_A 183 TNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYHDSSSVG 262 (544)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCSSSCCSS
T ss_pred CchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccCcCChHH
Confidence 3345899999999998762 37999999999999999999887642 458999999998542211111001
Q ss_pred Ccc----cccccCCCCCH---HHHHHHHhCCccCCCCCCC--C--C-ccCCc-EEEEecCCCCCCCChHHHHHHHHHHhh
Q psy4818 614 AYY----SESEFGSPNNK---THFHNLLSYSPLHNIKVPP--N--N-TQYPA-TLVLTGDHDDRVPPLHSYKFIATLQEK 680 (734)
Q Consensus 614 ~~~----~~~~~g~~~~~---~~~~~~~~~sp~~~~~~p~--~--~-~~~P~-~Li~~g~~D~~v~~~~~~~~~~~L~~~ 680 (734)
... .....|.+... +..+-|++.++..-+.... . . ...++ .+......|..+.+.+..++.++.+..
T Consensus 263 ~~~~~~~~~~~~gc~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~~ 342 (544)
T 1thg_A 263 PDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELFRSGRYA 342 (544)
T ss_dssp SSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSCCCCCSSSSCSCHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHhcCCHHHHHHhhhhcccccccccccccccceeeeCCcccCcCHHHHHhcCCCC
Confidence 110 11123433211 3344455544422111000 0 0 00000 122344567778888888777655444
Q ss_pred hCCCCCCCCcEEEEEeCCCCCCCC
Q psy4818 681 IGSLPYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~gH~~~ 704 (734)
++|+.+-...++||.+.
T Consensus 343 -------~vp~l~G~~~~Eg~~f~ 359 (544)
T 1thg_A 343 -------KVPYISGNQEDEGTAFA 359 (544)
T ss_dssp -------CCCEEEEEETBTTTTTG
T ss_pred -------CccEEEEeecCchhhhc
Confidence 88999999999999875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-09 Score=124.84 Aligned_cols=274 Identities=8% Similarity=-0.024 Sum_probs=165.7
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV 175 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl 175 (734)
+.|+|.+++....++ .-.+| +...+.....+. .+...+..++|||||++||.+.. . ..|++||+
T Consensus 21 ~sp~~~~la~~~~~g---~v~iw--d~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~-d----g~i~vw~~ 84 (814)
T 3mkq_A 21 FHPTEPWVLTTLYSG---RVEIW--NYETQVEVRSIQ------VTETPVRAGKFIARKNWIIVGSD-D----FRIRVFNY 84 (814)
T ss_dssp ECSSSSEEEEEETTS---EEEEE--ETTTTEEEEEEE------CCSSCEEEEEEEGGGTEEEEEET-T----SEEEEEET
T ss_pred ECCCCCEEEEEeCCC---EEEEE--ECCCCceEEEEe------cCCCcEEEEEEeCCCCEEEEEeC-C----CeEEEEEC
Confidence 346777777654322 23344 333333222222 12234789999999999998764 2 47999999
Q ss_pred CCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEE
Q psy4818 176 DTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLH 254 (734)
Q Consensus 176 ~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~ 254 (734)
.+|+.+.... .......++|+|||+.|+....+. .|.+|++.++.. ....+. .+...+..
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----------------~i~vw~~~~~~~-~~~~~~--~~~~~v~~ 145 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL----------------TVKLWNWENNWA-LEQTFE--GHEHFVMC 145 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS----------------EEEEEEGGGTSE-EEEEEE--CCSSCEEE
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCC----------------EEEEEECCCCce-EEEEEc--CCCCcEEE
Confidence 9998644222 222346899999999988665432 688888876521 112222 23345678
Q ss_pred EEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc-cceEE-EEEe--cCCeEEEEeCCCCCCce
Q psy4818 255 SEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM-DHHHE-IIAN--NGPELIVKTTKNAPKGK 329 (734)
Q Consensus 255 ~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~-~~~~~-~~s~--dg~~l~~~s~~~~~~~~ 329 (734)
+.|+| ||+.|+.... ...|++||+.++. ....+.... ..... .|+| ++..|+..+. +..
T Consensus 146 ~~~~p~~~~~l~~~~~----dg~v~vwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~ 209 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCL----DRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLT 209 (814)
T ss_dssp EEEETTEEEEEEEEET----TSEEEEEETTCSS--------CSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSE
T ss_pred EEEEcCCCCEEEEEeC----CCeEEEEECCCCc--------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCE
Confidence 99999 7877775432 2579999997721 222232222 22222 3888 7776665443 346
Q ss_pred EEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccc
Q psy4818 330 VVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYN 409 (734)
Q Consensus 330 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~ 409 (734)
|..+|+.++. ....+... ...+..+.+..++.++++...+ ..|++||+.+++.+..+..+...+..+.+++++.
T Consensus 210 i~~~d~~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d--g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 210 IKIWDYQTKS---CVATLEGH-MSNVSFAVFHPTLPIIISGSED--GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp EEEEETTTTE---EEEEEECC-SSCEEEEEECSSSSEEEEEETT--SCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred EEEEECCCCc---EEEEEcCC-CCCEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence 9999987654 22223322 2345555555546666666655 4799999988888777776666677888888877
Q ss_pred eEEEEEecCCCCceEEEEeC
Q psy4818 410 EVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 410 ~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+++...+.. .+..+++
T Consensus 284 ~~~~~~~~~~---~~~~~~~ 300 (814)
T 3mkq_A 284 KNYIASGFDN---GFTVLSL 300 (814)
T ss_dssp GGEEEEEETT---EEEEEEC
T ss_pred ceEEEEEeCC---CEEEEEc
Confidence 5544333322 3455554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-09 Score=116.94 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=147.3
Q ss_pred EeeEEeCC----CCcEEEEEEeCCCCceEEEEEEECCCCCccccccc------------ccccCeeEEEcCCcEEEEEEE
Q psy4818 144 LKLYAFSD----NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK------------NVKFPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 144 ~~~~~~SP----DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~------------~~~~~~~~wSpDg~~l~y~~~ 207 (734)
...++||| ||++|+.+.... .+|.+||..+++.+..... .....++.+|||++.+++...
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWP----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEES----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cceEEeCCCcCCCCCEEEEEEccC----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 56789999 999987665433 3689999999886542211 112357899999998776542
Q ss_pred ecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC
Q psy4818 208 CDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 287 (734)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~ 287 (734)
. ..+|+++++.+...- .+...+. ..+..++.|||||++++.... ..+.|.+||+.++.
T Consensus 300 ~---------------~g~i~vvd~~~~~~l--~~~~i~~-~~~~~~~~~spdg~~l~va~~---~~~~v~v~D~~tg~- 357 (543)
T 1nir_A 300 E---------------TGKVLLVNYKDIDNL--TVTSIGA-APFLHDGGWDSSHRYFMTAAN---NSNKVAVIDSKDRR- 357 (543)
T ss_dssp T---------------TTEEEEEECTTSSSC--EEEEEEC-CSSCCCEEECTTSCEEEEEEG---GGTEEEEEETTTTE-
T ss_pred C---------------CCeEEEEEecCCCcc--eeEEecc-CcCccCceECCCCCEEEEEec---CCCeEEEEECCCCe-
Confidence 1 237999998765321 2111111 124456899999999876543 22579999998832
Q ss_pred CcccCCCCceeeec-----cccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCC----CCceEeecCCCCceeEEE
Q psy4818 288 GKISGKFPLKTVIP-----GMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCE----KNWKTLIPEDENRTLDVV 358 (734)
Q Consensus 288 ~~l~~~~~~~~l~~-----~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~~ 358 (734)
....+. ....+...++|+++.+|+..+.. ...|.++++++... -++...++......+.-.
T Consensus 358 --------l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 358 --------LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp --------EEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred --------EEEeeccCCCCCCCCCcccCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 111111 11122333567877776654422 34688888876210 112222332212222222
Q ss_pred EEeeCCEEEEEEEeC----CceeEEEEECCCCcee-eeeC--------CCCceEEeeccCcccceEEEEEec-CCCCceE
Q psy4818 359 AAVANNKLIVHYIQN----VRSVMDLHDLNTGKRL-HSFP--------LDLGQITHISGRRKYNEVFYGFTS-FLQPGTI 424 (734)
Q Consensus 359 ~~~~~~~l~~~~~~~----~~~~l~~~dl~~g~~~-~~l~--------~~~g~v~~~~~~~d~~~l~~~~ss-~~~P~~~ 424 (734)
..++++.|++...-+ ....|.+||+++++.. +.|. .+...+..+.++++++.++++.-+ -.....|
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence 234434555433111 1347999999888865 4442 223456678899999999987532 2446789
Q ss_pred EEEeC
Q psy4818 425 YHCNI 429 (734)
Q Consensus 425 ~~~d~ 429 (734)
.++|.
T Consensus 508 ~v~D~ 512 (543)
T 1nir_A 508 VVVDD 512 (543)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99998
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.3e-12 Score=126.05 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=72.6
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++||...... .|.. ....|++ +|.|+++|.||.|.... . ....+++++.+.+..|++. .+.
T Consensus 27 ~p~vvllHG~~~~~~--~w~~-~~~~L~~-~~rvia~DlrGhG~S~~---~-----~~~~~~~~~a~dl~~ll~~--l~~ 92 (276)
T 2wj6_A 27 GPAILLLPGWCHDHR--VYKY-LIQELDA-DFRVIVPNWRGHGLSPS---E-----VPDFGYQEQVKDALEILDQ--LGV 92 (276)
T ss_dssp SCEEEEECCTTCCGG--GGHH-HHHHHTT-TSCEEEECCTTCSSSCC---C-----CCCCCHHHHHHHHHHHHHH--HTC
T ss_pred CCeEEEECCCCCcHH--HHHH-HHHHHhc-CCEEEEeCCCCCCCCCC---C-----CCCCCHHHHHHHHHHHHHH--hCC
Confidence 478999999765544 3444 3456764 89999999999664321 1 1234566666655555554 234
Q ss_pred CcEEEEEcChHHHHHHHHHhcC-CCceeEEEEcCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQR-PELYGAALILVG 601 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~-p~~~~a~v~~~~ 601 (734)
+++.++|||+||.+++.++.++ |++++++|+..+
T Consensus 93 ~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~ 127 (276)
T 2wj6_A 93 ETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDW 127 (276)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESC
T ss_pred CceEEEEECHHHHHHHHHHHHhCHHhhceEEEecc
Confidence 5899999999999999999999 999999988764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-09 Score=111.33 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=149.1
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..++|||||++|+-... . ..|++||+.+++.+.... ....+..+.|+|||+.|+....+.
T Consensus 150 ~~~V~~v~~~~~~~~l~sgs~-D----~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~---------- 214 (410)
T 1vyh_C 150 TDSVQDISFDHSGKLLASCSA-D----MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK---------- 214 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEET-T----SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTS----------
T ss_pred CCcEEEEEEcCCCCEEEEEeC-C----CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----------
Confidence 345788999999998886543 2 369999999887543222 222346889999999887665432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|.+|++.++.. +..+. .+...+..+.++|||++|+.... ...|.+||+.++. ....+
T Consensus 215 ------~i~~wd~~~~~~--~~~~~--~h~~~v~~~~~~~~g~~l~s~s~----D~~v~vwd~~~~~--------~~~~~ 272 (410)
T 1vyh_C 215 ------TIKMWEVQTGYC--VKTFT--GHREWVRMVRPNQDGTLIASCSN----DQTVRVWVVATKE--------CKAEL 272 (410)
T ss_dssp ------EEEEEETTTCCE--EEEEE--CCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC--------EEEEE
T ss_pred ------eEEEEECCCCcE--EEEEe--CCCccEEEEEECCCCCEEEEEcC----CCeEEEEECCCCc--------eeeEe
Confidence 789999987642 22333 23446678899999998874332 2579999998731 11112
Q ss_pred eccccceEEE-EEec--------------------CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEE
Q psy4818 300 IPGMDHHHEI-IANN--------------------GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV 358 (734)
Q Consensus 300 ~~~~~~~~~~-~s~d--------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 358 (734)
.......... |+|+ |..|+ .... +..|..||+.++.. ...+..+. ..+..+
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-sgs~---D~~i~iwd~~~~~~--~~~~~~h~--~~v~~v 344 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL-SGSR---DKTIKMWDVSTGMC--LMTLVGHD--NWVRGV 344 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE-EEET---TSEEEEEETTTTEE--EEEEECCS--SCEEEE
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE-EEeC---CCeEEEEECCCCce--EEEEECCC--CcEEEE
Confidence 2222222222 6665 33344 3322 34699999987641 23333332 344555
Q ss_pred EEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 359 AAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..++..+++...+ ..|++||+.+++.+..+......|.++.+++++..++ +.+.. ..+..|++
T Consensus 345 ~~~~~g~~l~s~s~D--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sgs~D---~~i~vW~~ 409 (410)
T 1vyh_C 345 LFHSGGKFILSCADD--KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVD---QTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETT--TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE-EEETT---SEEEEEC-
T ss_pred EEcCCCCEEEEEeCC--CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE-EEeCC---CcEEEEeC
Confidence 555546666676666 4799999988887777776666788888998886554 33332 35666654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-09 Score=112.02 Aligned_cols=235 Identities=12% Similarity=0.061 Sum_probs=146.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccc---------------cCeeEEEcCCcEEEEE
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVK---------------FPSISWTHDHKGFFYN 205 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~---------------~~~~~wSpDg~~l~y~ 205 (734)
..+..+.|+|||++|+.... . ..|++||+.+++.+.... .... ...+.|+|++. ++..
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 223 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDV-E----NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP 223 (425)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEE
T ss_pred ccEEEEEECCCCCEEEEEec-C----CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE
Confidence 34788999999999886653 2 359999999887543211 1111 46789999875 4443
Q ss_pred EEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 206 QYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
..+ ..|+++++.+... +..+.. +...+..+.|+|||++|+.... ...|++||+.++
T Consensus 224 ~~~----------------g~i~~~d~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~ 279 (425)
T 1r5m_A 224 GPK----------------GAIFVYQITEKTP--TGKLIG--HHGPISVLEFNDTNKLLLSASD----DGTLRIWHGGNG 279 (425)
T ss_dssp CGG----------------GCEEEEETTCSSC--SEEECC--CSSCEEEEEEETTTTEEEEEET----TSCEEEECSSSB
T ss_pred cCC----------------CeEEEEEcCCCce--eeeecc--CCCceEEEEECCCCCEEEEEcC----CCEEEEEECCCC
Confidence 322 2688999887643 223322 2335678999999998875432 257999999873
Q ss_pred CCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCC
Q psy4818 286 PDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANN 364 (734)
Q Consensus 286 ~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 364 (734)
. ....+.......... |+|++ .++..+. +..|..+|+.++. ....+... ...+..+.+..++
T Consensus 280 ~--------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----d~~i~i~d~~~~~---~~~~~~~~-~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 280 N--------SQNCFYGHSQSIVSASWVGDD-KVISCSM----DGSVRLWSLKQNT---LLALSIVD-GVPIFAGRISQDG 342 (425)
T ss_dssp S--------CSEEECCCSSCEEEEEEETTT-EEEEEET----TSEEEEEETTTTE---EEEEEECT-TCCEEEEEECTTS
T ss_pred c--------cceEecCCCccEEEEEECCCC-EEEEEeC----CCcEEEEECCCCc---EeEecccC-CccEEEEEEcCCC
Confidence 1 222222222233333 89988 4444333 3469999997754 23333332 2345555555545
Q ss_pred EEEEEEEeCCceeEEEEECCCCc--------------------eeeeeCCCCc--eEEeeccCcccceEEEEEecCCCCc
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNTGK--------------------RLHSFPLDLG--QITHISGRRKYNEVFYGFTSFLQPG 422 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~g~--------------------~~~~l~~~~g--~v~~~~~~~d~~~l~~~~ss~~~P~ 422 (734)
.++++...+ ..|++|++.+++ .+..+..... .+..+.++++++.++....+ .
T Consensus 343 ~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g 416 (425)
T 1r5m_A 343 QKYAVAFMD--GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL----Q 416 (425)
T ss_dssp SEEEEEETT--SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS----S
T ss_pred CEEEEEECC--CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC----c
Confidence 666666655 478999997776 5666665533 78889999998766544332 3
Q ss_pred eEEEEeC
Q psy4818 423 TIYHCNI 429 (734)
Q Consensus 423 ~~~~~d~ 429 (734)
.++.||+
T Consensus 417 ~i~iw~~ 423 (425)
T 1r5m_A 417 EGSVVAI 423 (425)
T ss_dssp CCEEEEC
T ss_pred eEEEEee
Confidence 5778887
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=114.14 Aligned_cols=212 Identities=13% Similarity=0.056 Sum_probs=124.4
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCe--EEEEEecccCCCC---Cc--hhh-----hccccccCCC----chhH
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNG--IYAIPNIRGGGEL---GE--DWH-----NAGRLLKKQN----CFDD 551 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~~~~---g~--~~~-----~~~~~~~~~~----~~~D 551 (734)
.+.||++||..+.... |. .++..|++.|+ .|+.+|+++.|.. |. ... ..+....... ..++
T Consensus 6 ~~pvvliHG~~~~~~~--~~-~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~ 82 (249)
T 3fle_A 6 TTATLFLHGYGGSERS--ET-FMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYW 82 (249)
T ss_dssp CEEEEEECCTTCCGGG--TH-HHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCChhH--HH-HHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHH
Confidence 4567888997655443 33 34567777886 5888888874421 11 000 0011111111 2456
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC-----ceeEEEEcCCcchhccccccccCcccccccCCCCC
Q psy4818 552 FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE-----LYGAALILVGALDMLRFNKFTIAYYSESEFGSPNN 626 (734)
Q Consensus 552 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~ 626 (734)
+.+++++|.++. ..+++.++||||||.+++.++.++|+ .++.+|+.++..+.................|.|..
T Consensus 83 l~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~~g~p~~ 160 (249)
T 3fle_A 83 IKEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDKQGKPSR 160 (249)
T ss_dssp HHHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCTTCCBSS
T ss_pred HHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcccCCCcc
Confidence 677788887663 34589999999999999999988764 57888877655443322111111101112344432
Q ss_pred -HHHHHHHHhCCccCCCCCCCCCccCCcEEEEecC------CCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCC-
Q psy4818 627 -KTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGD------HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD- 698 (734)
Q Consensus 627 -~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~------~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~- 698 (734)
...+..|.+..+ .+.. .+.| +|+++|+ .|..||...++.+...++.. ......+++.|
T Consensus 161 ~~~~~~~l~~~~~--~~p~----~~~~-vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~-------~~~y~e~~v~g~ 226 (249)
T 3fle_A 161 MNAAYRQLLSLYK--IYCG----KEIE-VLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGS-------TKSYQEMKFKGA 226 (249)
T ss_dssp CCHHHHHTGGGHH--HHTT----TTCE-EEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTC-------SSEEEEEEEESG
T ss_pred cCHHHHHHHHHHh--hCCc----cCCe-EEEEeccCCCCCCCCCcccHHHHHHHHHHHhhC-------CCceEEEEEeCC
Confidence 234444433211 1111 2344 9999998 79999998887776666655 55666666765
Q ss_pred -CCCCCCCchHHhHHHHHHHHHHH
Q psy4818 699 -AGHGQGTPLMKSIEEMTDIYVFL 721 (734)
Q Consensus 699 -~gH~~~~~~~~~~~~~~~~~~fl 721 (734)
+.|...... .+....+..||
T Consensus 227 ~a~Hs~l~~n---~~V~~~I~~FL 247 (249)
T 3fle_A 227 KAQHSQLHEN---KDVANEIIQFL 247 (249)
T ss_dssp GGSTGGGGGC---HHHHHHHHHHH
T ss_pred CCchhccccC---HHHHHHHHHHh
Confidence 889876542 35566677776
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-08 Score=104.55 Aligned_cols=223 Identities=10% Similarity=0.010 Sum_probs=140.5
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc---ccc--ccccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY---PEV--LKNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~---~~~--~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
.+...+|||||++||.... ...+.+||+.+++.. ... ..........|++|++ |+....+
T Consensus 99 ~v~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d--------- 163 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGL-----DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD--------- 163 (340)
T ss_dssp CEEEEEECTTSSEEEEEET-----TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT---------
T ss_pred cEEEEEECCCCCEEEEEeC-----CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC---------
Confidence 3678999999999986553 247999999876421 111 1111235678999886 5444432
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
..|.+|++.++.. +..+. .+...+..+.|+|||++|+... ....|.+||+.++. ...
T Consensus 164 -------~~i~~wd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~l~sg~----~d~~v~~wd~~~~~--------~~~ 220 (340)
T 1got_B 164 -------TTCALWDIETGQQ--TTTFT--GHTGDVMSLSLAPDTRLFVSGA----CDASAKLWDVREGM--------CRQ 220 (340)
T ss_dssp -------SCEEEEETTTTEE--EEEEC--CCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCS--------EEE
T ss_pred -------CcEEEEECCCCcE--EEEEc--CCCCceEEEEECCCCCEEEEEe----CCCcEEEEECCCCe--------eEE
Confidence 2688899876531 22222 3344567899999999877432 22579999998731 122
Q ss_pred eeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-CCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 298 TVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 298 ~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
.+.......... |+|+|+.|+..+. +..|..||+.+.. ....+... ....+..+.+..++.++++...+
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-- 291 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQ---ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-- 291 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE---EEEEECCTTCCSCEEEEEECTTSSEEEEEETT--
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCc---EEEEEccCCcccceEEEEECCCCCEEEEECCC--
Confidence 222222233333 8999987775544 3458899987654 12222222 12235556565556777777666
Q ss_pred eeEEEEECCCCceeeeeCCCCceEEeeccCcccceEE
Q psy4818 376 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVF 412 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~ 412 (734)
..+.+||+.+++.+..+....+.|..+.+++++..++
T Consensus 292 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred CeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEE
Confidence 4799999988887777776677788888998886554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-09 Score=109.58 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=132.4
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC--CCCccc--ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD--TGKDYP--EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~--~g~~~~--~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
+..++|||||++|+++.... ..|.+|++. +|+... ..........++|+|||+.|++....
T Consensus 40 ~~~~~~spdg~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------- 104 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----------- 104 (343)
T ss_dssp CCCEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT-----------
T ss_pred CceEEECCCCCEEEEeecCC----CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC-----------
Confidence 45789999999988776543 257777766 666321 11111134689999999988877632
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC-CCCCcccCCCCce-
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS-LPDGKISGKFPLK- 297 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~- 297 (734)
...|+++++..+.. ...+....... ....+.|||||++|++.... ...|++||+.+ +. +. ...
T Consensus 105 ----~~~i~~~d~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~~---~~---~~~~ 169 (343)
T 1ri6_A 105 ----AGNVSVTRLEDGLP-VGVVDVVEGLD-GCHSANISPDNRTLWVPALK---QDRICLFTVSDDGH---LV---AQDP 169 (343)
T ss_dssp ----TTEEEEEEEETTEE-EEEEEEECCCT-TBCCCEECTTSSEEEEEEGG---GTEEEEEEECTTSC---EE---EEEE
T ss_pred ----CCeEEEEECCCCcc-ccccccccCCC-CceEEEECCCCCEEEEecCC---CCEEEEEEecCCCc---ee---eecc
Confidence 12577777642111 11111111111 23468899999998765422 25799999876 21 10 000
Q ss_pred -eeecccc-ceE-EEEEecCCeEEEEeCCCCCCceEEEEecCC--CCCCCceEee--cCC--CCceeEEEEEeeC-CEEE
Q psy4818 298 -TVIPGMD-HHH-EIIANNGPELIVKTTKNAPKGKVVTINLNN--PCEKNWKTLI--PED--ENRTLDVVAAVAN-NKLI 367 (734)
Q Consensus 298 -~l~~~~~-~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~--~~~~~~~~l~--~~~--~~~~~~~~~~~~~-~~l~ 367 (734)
.+..... ... ..|+|||+.+|+.... ...|.+++++. +.......+. +.. .......+.+..+ +.++
T Consensus 170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~~~---~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 170 AEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred cccccCCCCCcceEEECCCCCEEEEEeCC---CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 1111111 111 2399999988877643 34688888853 3210011111 111 0112334445443 4555
Q ss_pred EEEEeCCceeEEEEECC--CCc--eeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VHYIQNVRSVMDLHDLN--TGK--RLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~--~g~--~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.... ...+.+|++. +++ .+..+... +.+..+.++++++.+++..... .--.+|.+|.
T Consensus 247 v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~-~~v~v~~~d~ 308 (343)
T 1ri6_A 247 ACDRT--ASLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKS-HHISVYEIVG 308 (343)
T ss_dssp EEETT--TTEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTT-CEEEEEEEET
T ss_pred EEecC--CCEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCC-CeEEEEEEcC
Confidence 54433 3578888885 333 22333322 2255778889888777654322 2223444465
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-08 Score=108.88 Aligned_cols=266 Identities=10% Similarity=0.041 Sum_probs=160.7
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWT 196 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wS 196 (734)
+++-+...|....++... ++...+..++|||||++||..... ..|.+||+++++.+....... ....+++
T Consensus 127 V~lWd~~tg~~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~~~~h~-~~v~~~s 196 (420)
T 4gga_A 127 VYLWSASSGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTSHS-ARVGSLS 196 (420)
T ss_dssp EEEEETTTCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEE
T ss_pred EEEEECCCCCEEEEEEec----CCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEEEeCCC-CceEEEe
Confidence 444454455555555432 123448899999999999876532 369999999998654332222 1234456
Q ss_pred cCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCce
Q psy4818 197 HDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD 276 (734)
Q Consensus 197 pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 276 (734)
+|++.|+....+ ..++.++...... .+..+. .+........|+|+|++++.... ...
T Consensus 197 ~~~~~l~sgs~d----------------~~i~~~d~~~~~~-~~~~~~--~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 197 WNSYILSSGSRS----------------GHIHHHDVRVAEH-HVATLS--GHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EETTEEEEEETT----------------SEEEEEETTSSSC-EEEEEE--CCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred eCCCEEEEEeCC----------------CceeEeeecccce-eeEEec--ccccceeeeeecCCCCeeeeeec----ccc
Confidence 677766655432 2677888766432 222222 23335667899999999885432 257
Q ss_pred EEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCcee
Q psy4818 277 LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTL 355 (734)
Q Consensus 277 i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 355 (734)
+.+|+..++.... ............... .|+|++..++.+... ..+..|..||+.++. ....+... ..+.
T Consensus 254 v~i~~~~~~~~~~----~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~~---~~~~~~~~-~~v~ 324 (420)
T 4gga_A 254 VNVWPSAPGEGGW----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGA---CLSAVDAH-SQVC 324 (420)
T ss_dssp EEEEESSCCSSCS----CCSEEECCCSSCEEEEEECTTCTTEEEEEEC-TTTCEEEEEETTTTE---EEEEEECS-SCEE
T ss_pred ceEEeeccccccc----eeeeeecccCCceeeeeeCCCcccEEEEEee-cCCCEEEEEeCCccc---cceeeccc-ccee
Confidence 8899987732211 111222222222223 388888777655432 234569999998765 23333332 3344
Q ss_pred EEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 356 DVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
......+++.+++.. ......|++||+.+++.+..+..+.+.|..+.++|++..|+ +.+.. ..+..||+
T Consensus 325 ~~~~~~~~~~lv~~s-g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~-S~s~D---~tvriWdv 393 (420)
T 4gga_A 325 SILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAAD---ETLRLWRC 393 (420)
T ss_dssp EEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETT---TEEEEECC
T ss_pred eeeecCCCCeEEEEE-ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEecC---CeEEEEEC
Confidence 444444545555443 22335799999999998888887777888999999987554 44443 36888888
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-09 Score=117.17 Aligned_cols=233 Identities=10% Similarity=0.065 Sum_probs=150.2
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..+..++|||||++|+.... . ..|.+||+.+...............++|+|||+.|+....+.
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~-d----~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------------ 366 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASD-D----KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK------------ 366 (577)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----SCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------------
T ss_pred CCeEEEEECCCCCEEEEEeC-C----CeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC------------
Confidence 34678999999999987653 2 358999987765433222222335789999999988766422
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
.|.+++.... .+..+. .+...+..++|||||++|+.... ...|.+||... .....+..
T Consensus 367 ----~v~~~~~~~~---~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~----d~~v~~~~~~~---------~~~~~~~~ 424 (577)
T 2ymu_A 367 ----TVKLWNRNGQ---LLQTLT--GHSSSVRGVAFSPDGQTIASASD----DKTVKLWNRNG---------QLLQTLTG 424 (577)
T ss_dssp ----EEEEEETTCC---EEEEEE--CCSSCEEEEEECTTSSCEEEEET----TSEEEEECTTC---------CEEEEEEC
T ss_pred ----EEEEEcCCCC---EEEEec--CCCCCeEEEEECCCCCEEEEEeC----CCEEEEEeCCC---------CEEEEecC
Confidence 5777775322 112222 23335678999999999885432 25789998654 11233333
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
........ |+||++.|+..+. +..|..+++.+.. ...+..+. ..+..+.+..++.++++...+ ..|++
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~----d~~v~~w~~~~~~---~~~~~~~~--~~v~~~~~spd~~~las~~~d--~~i~i 493 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASD----DKTVKLWNRNGQL---LQTLTGHS--SSVRGVAFSPDGQTIASASDD--KTVKL 493 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEET----TSEEEEEETTSCE---EEEEECCS--SCEEEEEECTTSCEEEEEETT--SEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEcC----CCEEEEEECCCCE---EEEEcCCC--CCEEEEEEcCCCCEEEEEeCC--CEEEE
Confidence 33333333 8999988776554 3468888975432 33343333 345556565556777777666 47889
Q ss_pred EECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
||. +|+.++.+....+.|..+.++|+++.|+.. +.. ..+.+||.
T Consensus 494 w~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~d---g~v~lwd~ 537 (577)
T 2ymu_A 494 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA-SDD---KTVKLWNR 537 (577)
T ss_dssp EET-TSCEEEEEECCSSCEEEEEECTTSSCEEEE-ETT---SEEEEECT
T ss_pred EcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEE-ECc---CEEEEEeC
Confidence 997 788878887776778889999998766543 322 46889987
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-12 Score=141.59 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=129.0
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccHH-H-H-HHHHhcCeEEEEEecccCC-CCC--chhhhcccccc
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSIS-R-C-MFLRHFNGIYAIPNIRGGG-ELG--EDWHNAGRLLK 544 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~-~-~-~~l~~~G~~v~~~~~rG~~-~~g--~~~~~~~~~~~ 544 (734)
+.+.++.|+.....++.|+||++|||....... .+... + . .+..+.|++|+.+|||.+. +|. .+... ...
T Consensus 98 l~l~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~---~~~ 174 (534)
T 1llf_A 98 LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA---EGS 174 (534)
T ss_dssp CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH---HTC
T ss_pred eEEEEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc---cCC
Confidence 667788898654456789999999985433222 23321 1 1 1223358999999999754 111 01101 112
Q ss_pred CCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcC--------CCceeEEEEcCCcchhcccccccc
Q psy4818 545 KQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQR--------PELYGAALILVGALDMLRFNKFTI 613 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~--------p~~~~a~v~~~~~~d~~~~~~~~~ 613 (734)
+...+.|+.++++|+.++ --.||+||.|+|+|+||.+++.++... +.+|+++|+.+|............
T Consensus 175 ~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~~~~~~~~~~~~ 254 (534)
T 1llf_A 175 GNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPSDPVDGTY 254 (534)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCCCCTTSHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccCcccCCCcChHH
Confidence 334588999999999875 236999999999999999988877653 568999999998432111110000
Q ss_pred Cc----ccccccCCCCCHHHHHHHHhCCccCCCCC----CCCCccC-CcEEEEecCCCCCCCChHHHHHHHHHHhhhCCC
Q psy4818 614 AY----YSESEFGSPNNKTHFHNLLSYSPLHNIKV----PPNNTQY-PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSL 684 (734)
Q Consensus 614 ~~----~~~~~~g~~~~~~~~~~~~~~sp~~~~~~----p~~~~~~-P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~ 684 (734)
.. ......|.+...+..+-|++.++..-+.. +. ...+ +..+......|..+.+.+..++.++.+..
T Consensus 255 ~~~~~~~~~~~~gc~~~~~~l~cLr~~~~~~l~~a~~~~~~-~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~~---- 329 (534)
T 1llf_A 255 GNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPG-FLAYSSLRLSYLPRPDGKNITDDMYKLVRDGKYA---- 329 (534)
T ss_dssp HHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCC-TTSTTTTSCSSCCCCCSSSSCSCHHHHHHTTCSC----
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHcCCHHHHHHHHHhccc-ccccccccccceeecCCccccCCHHHHHHcCCCC----
Confidence 00 01122344322233344444433211100 00 0000 00122344557778888887776554433
Q ss_pred CCCCCcEEEEEeCCCCCCCC
Q psy4818 685 PYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 685 ~~~~~~~~~~~~~~~gH~~~ 704 (734)
++|+.+-...++||.+.
T Consensus 330 ---~vp~l~G~~~~Eg~~f~ 346 (534)
T 1llf_A 330 ---SVPVIIGDQNDEGTIFG 346 (534)
T ss_dssp ---CCCEEEEEETBTTHHHH
T ss_pred ---CCCEEEEEecCchhhhh
Confidence 78999999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-08 Score=106.50 Aligned_cols=240 Identities=9% Similarity=0.058 Sum_probs=146.3
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..++|||||++||-... ...|.+||+.+++.... ..........+|+|||+.|+....+.
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~-----Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~---------- 128 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQ-----DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN---------- 128 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS----------
T ss_pred CCeEEEEEECCCCCEEEEEeC-----CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC----------
Confidence 345788999999999885543 24799999988875332 12222346899999999887665332
Q ss_pred cccCCcEEEEEECCCCCCC----CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDK----DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~----~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.+.++++...... ....+.. +...+..+.|+||++.|+.... ...|.+||+.++. .
T Consensus 129 ------~i~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~----D~~v~lwd~~~~~--------~ 188 (354)
T 2pbi_B 129 ------KCSVYPLTFDKNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASG----DGTCALWDVESGQ--------L 188 (354)
T ss_dssp ------EEEEEECCCCTTCCSGGGCEEEEE--CSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCC--------E
T ss_pred ------CEEEEEEeccccccccccceeeec--cCCcEEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCe--------E
Confidence 5666666543211 1112221 2335678999999999874332 2689999998731 1
Q ss_pred ceeeeccccceEEE-EEe--cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 296 LKTVIPGMDHHHEI-IAN--NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
...+..+....... +++ +|+.|+..+. +..|..||+.++. ....+... ...+..+.+..++.++++...
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~----Dg~v~~wd~~~~~---~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGC----DKKAMVWDMRSGQ---CVQAFETH-ESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEET----TSCEEEEETTTCC---EEEEECCC-SSCEEEEEECTTSSEEEEEET
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCc---EEEEecCC-CCCeEEEEEeCCCCEEEEEeC
Confidence 22222222222222 555 4555554433 3469999998765 23333332 334555655544666667666
Q ss_pred CCceeEEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ ..+.+||+.+++.+..+... ...+..+.+++++..++..... ..+.+||+
T Consensus 261 D--~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d----~~i~vwd~ 313 (354)
T 2pbi_B 261 D--ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND----YTINVWDV 313 (354)
T ss_dssp T--SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred C--CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC----CcEEEEEC
Confidence 6 47899999777665555433 2345677888888766554432 46899998
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-08 Score=108.54 Aligned_cols=260 Identities=11% Similarity=0.084 Sum_probs=157.6
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISW 195 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~w 195 (734)
+++.+..++....++... +...+..++|||||++|+..... ..|++||+.+++.+.... .......+.|
T Consensus 115 v~lw~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 184 (401)
T 4aez_A 115 VYVWNADSGSVSALAETD-----ESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTKLRTMAGHQARVGCLSW 184 (401)
T ss_dssp EEEEETTTCCEEEEEECC-----TTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEeeCCCCcEeEeeecC-----CCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeEEEEecCCCCceEEEEE
Confidence 444444445544444432 22347899999999999876642 369999999987543222 2223356778
Q ss_pred EcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCc
Q psy4818 196 THDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGS 275 (734)
Q Consensus 196 SpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 275 (734)
+++.|+....+ ..|++|++..... .+..+. .+...+..+.|+|||++|+.... ..
T Consensus 185 --~~~~l~~~~~d----------------g~i~i~d~~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~----d~ 239 (401)
T 4aez_A 185 --NRHVLSSGSRS----------------GAIHHHDVRIANH-QIGTLQ--GHSSEVCGLAWRSDGLQLASGGN----DN 239 (401)
T ss_dssp --ETTEEEEEETT----------------SEEEEEETTSSSC-EEEEEE--CCSSCEEEEEECTTSSEEEEEET----TS
T ss_pred --CCCEEEEEcCC----------------CCEEEEecccCcc-eeeEEc--CCCCCeeEEEEcCCCCEEEEEeC----CC
Confidence 55666655432 2789999875432 122232 23445678999999999886432 25
Q ss_pred eEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCce
Q psy4818 276 DLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRT 354 (734)
Q Consensus 276 ~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 354 (734)
.|++||+.++ .....+......... .|+|+++.+++.+.. ..+..|..+|+.++. ....+... ..
T Consensus 240 ~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i~d~~~~~---~~~~~~~~--~~ 305 (401)
T 4aez_A 240 VVQIWDARSS--------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGG-TMDKQIHFWNAATGA---RVNTVDAG--SQ 305 (401)
T ss_dssp CEEEEETTCS--------SEEEEECCCSSCCCEEEECTTSTTEEEEECC-TTTCEEEEEETTTCC---EEEEEECS--SC
T ss_pred eEEEccCCCC--------CccEEecCCcceEEEEEECCCCCCEEEEecC-CCCCEEEEEECCCCC---EEEEEeCC--Cc
Confidence 7999999872 122222222222333 399998888776541 124579999998765 23333332 33
Q ss_pred eEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeee--eCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 355 LDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHS--FPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~--l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+.+..++..++.........|++|++.+++.... +....+.+..+.+++++..++.. +. -..+..||+
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~-~~---dg~i~iw~~ 378 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA-AS---DENLKFWRV 378 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE-CT---TSEEEEEEC
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE-eC---CCcEEEEEC
Confidence 5556555445555554322235799999877665433 33445667778888988755543 32 257999998
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-08 Score=105.40 Aligned_cols=285 Identities=13% Similarity=0.097 Sum_probs=141.0
Q ss_pred CCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC-CCceEEEEEEECCCCCccccc-c--cc
Q psy4818 112 QNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS-GSDWNTLHIKDVDTGKDYPEV-L--KN 187 (734)
Q Consensus 112 ~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~-g~~~~~l~v~dl~~g~~~~~~-~--~~ 187 (734)
...-.+|..+..++..+.+... .. .....++|||||++|+++...+ +.....+|.++.++|+..... . ..
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-~~-----~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-EV-----ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-EC-----SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCCEEEEEEeCCCCCEEEeecc-cC-----CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 3344566666666665554432 11 1134679999999988776532 222344555565557542221 1 11
Q ss_pred cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC-CCe-eEEec-CCC-------CeeEEEEEE
Q psy4818 188 VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD-KDI-PVVEF-PNG-------RSLGLHSEV 257 (734)
Q Consensus 188 ~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~-~~~-~v~~~-~~~-------~~~~~~~~~ 257 (734)
.....+++ ||+.|+..... ...|.++++.+... ..+ ..... ... ......+.|
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~---------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYS---------------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETT---------------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred CCcEEEEE--CCCEEEEEECC---------------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 11123444 99887765531 23677777764321 111 11111 000 112356899
Q ss_pred ecCCcEEEEEEecCCCCceEEEEeCCCCCCC----c-ccCC-C-CceeeeccccceEEEEEecCCeEEEEeCCCCCCceE
Q psy4818 258 TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG----K-ISGK-F-PLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKV 330 (734)
Q Consensus 258 SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~----~-l~~~-~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l 330 (734)
||||++|++... ....|++|+++.. .. . +... . ....+..+.......|+|||+.+|+.... ...|
T Consensus 163 spdg~~l~~~~~---~~~~v~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v 235 (361)
T 3scy_A 163 TPDGKYLLADDL---GTDQIHKFNINPN-ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI---GGTV 235 (361)
T ss_dssp CTTSSEEEEEET---TTTEEEEEEECTT-CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT---TCEE
T ss_pred CCCCCEEEEEeC---CCCEEEEEEEcCC-CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC---CCeE
Confidence 999999887542 2257788877651 11 1 1100 0 00011111111222499999988876643 2458
Q ss_pred EEEecCCCCCCCceEeecCC-CCceeEEEEEeeCC-EEEEEEEeCCceeEEEEEC--CCCce--eeeeCCCCceEEeecc
Q psy4818 331 VTINLNNPCEKNWKTLIPED-ENRTLDVVAAVANN-KLIVHYIQNVRSVMDLHDL--NTGKR--LHSFPLDLGQITHISG 404 (734)
Q Consensus 331 ~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~~~dl--~~g~~--~~~l~~~~g~v~~~~~ 404 (734)
.+++++++.......+.... .......+.+..++ .+++.. .++...+.+|++ .+|+. +..+.. ...+..+.+
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII 313 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence 88887755311111121111 11222344454434 455443 331345666666 35653 223332 223446778
Q ss_pred CcccceEEEEEecCCCCceEEEEeC
Q psy4818 405 RRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 405 ~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+||++.+++.... ..--.+|.+|.
T Consensus 314 spdg~~l~~~~~~-~~~v~v~~~d~ 337 (361)
T 3scy_A 314 TPNGKYLLVACRD-TNVIQIFERDQ 337 (361)
T ss_dssp CTTSCEEEEEETT-TTEEEEEEECT
T ss_pred CCCCCEEEEEECC-CCCEEEEEEEC
Confidence 8999877766532 22234555776
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-09 Score=116.31 Aligned_cols=196 Identities=8% Similarity=0.013 Sum_probs=109.0
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCC----eeEEEEEEecCCcEEE
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGR----SLGLHSEVTDCGRYLL 265 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~----~~~~~~~~SpDG~~l~ 265 (734)
+..++|||||+.|+-...+. .|.+|+..+ ++.....+. .-+.+++|||||++|+
T Consensus 88 V~~vawSPdG~~LAs~s~dg----------------~V~iwd~~~------~l~~l~~~~~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNG----------------NVSVFKDNK------MLTNLDSKGNLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp EEEEEECSSSSCEEEEETTS----------------CEEEEETTE------EEEECCCSSCSTTTCEEEEEECSSSSCEE
T ss_pred EEEEEECCCCCEEEEEeCCC----------------cEEEEeCCc------eeeeccCCCccccccEEEEEEcCCCCEEE
Confidence 46789999999999777543 467777432 222211111 1256899999999999
Q ss_pred EEEecCCCCceEEEEeCCCCCCCcccCCCCceeee---c-cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCC
Q psy4818 266 VSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI---P-GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCE 340 (734)
Q Consensus 266 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~---~-~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 340 (734)
.... ...|.+||+.++.....+ -.....+. . +....... |+||| ++..+. +..++.|+++++..
T Consensus 146 sgs~----DGtVkIWd~~~~~l~~~~-~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 146 VGNE----DGELQFFSIRKNSENTPE-FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSVFSMTVSASSH 214 (588)
T ss_dssp EEET----TSEEEEEECCCCTTTCCC-CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCEEEECCCSSSS
T ss_pred EEcC----CCEEEEEECCCCcccccc-ceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeEEEEECCCCcc
Confidence 6543 368999999883210000 00012221 1 11223333 99998 444333 24599999987652
Q ss_pred C-CceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeecc--CcccceEEEEEec
Q psy4818 341 K-NWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG--RRKYNEVFYGFTS 417 (734)
Q Consensus 341 ~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~--~~d~~~l~~~~ss 417 (734)
. .+..+.... ...+..+.+. ++.++ +.. + ..+++||+.+++...........+..+.+ ++++..+++++.+
T Consensus 215 ~~~~~tL~~~h-~~~V~svaFs-g~~LA-Sa~-~--~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 215 QPVSRMIQNAS-RRKITDLKIV-DYKVV-LTC-P--GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp CCCEEEEECCC-SSCCCCEEEE-TTEEE-EEC-S--SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred ccceeeecccc-cCcEEEEEEE-CCEEE-EEe-C--CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence 1 122332222 2344455555 44444 443 3 58999999766542222234555667777 8887666655433
Q ss_pred CCCCceEEEE
Q psy4818 418 FLQPGTIYHC 427 (734)
Q Consensus 418 ~~~P~~~~~~ 427 (734)
.+ .+|..
T Consensus 289 G~---klw~~ 295 (588)
T 2j04_A 289 SY---KVLLE 295 (588)
T ss_dssp EE---EEEES
T ss_pred CC---EEEee
Confidence 22 45554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.3e-09 Score=107.99 Aligned_cols=288 Identities=11% Similarity=-0.006 Sum_probs=146.0
Q ss_pred eCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy4818 99 QENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 178 (734)
Q Consensus 99 ~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g 178 (734)
.++.+|..-... ..|++.+..++.....+.... ......++|||||++++++.... ..|+++|++++
T Consensus 9 ~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~~~v~~~~~----~~i~~~d~~t~ 75 (349)
T 1jmx_B 9 AGHEYMIVTNYP----NNLHVVDVASDTVYKSCVMPD-----KFGPGTAMMAPDNRTAYVLNNHY----GDIYGIDLDTC 75 (349)
T ss_dssp TTCEEEEEEETT----TEEEEEETTTTEEEEEEECSS-----CCSSCEEEECTTSSEEEEEETTT----TEEEEEETTTT
T ss_pred CCCEEEEEeCCC----CeEEEEECCCCcEEEEEecCC-----CCCCceeEECCCCCEEEEEeCCC----CcEEEEeCCCC
Confidence 345555544333 347777765554433343221 01245789999999887765433 36999999998
Q ss_pred Cccccc-cc------ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC-CCeeEEecCCCCe
Q psy4818 179 KDYPEV-LK------NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD-KDIPVVEFPNGRS 250 (734)
Q Consensus 179 ~~~~~~-~~------~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~-~~~~v~~~~~~~~ 250 (734)
+.+... .. ......++|||||+.|++...+..... .........|+++++.++.. +.+..+..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~----~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--- 148 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN----DHYVVKPPRLEVFSTADGLEAKPVRTFPMPR--- 148 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS----SCEEECCCEEEEEEGGGGGGBCCSEEEECCS---
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccc----cccccCCCeEEEEECCCccccceeeeccCCC---
Confidence 754322 11 111367899999999998875410000 00001124799999876432 1222333322
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee----------ee--ccccc----eEE-EEEec
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT----------VI--PGMDH----HHE-IIANN 313 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~----------l~--~~~~~----~~~-~~s~d 313 (734)
....++|||||+ +++. . .+|+++|+.++..........+.. +. ..... ... .+++|
T Consensus 149 ~~~~~~~s~dg~-l~~~--~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 221 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVA--G----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221 (349)
T ss_dssp SCCCEEECTTSC-EEEE--S----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred cccceeECCCCc-EEEc--c----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence 234678999999 6542 1 349999998742110000000000 00 00000 000 02222
Q ss_pred CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-e-eCCEEEEEEEeCCceeEEEEECCCCceeee
Q psy4818 314 GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-V-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHS 391 (734)
Q Consensus 314 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~ 391 (734)
+..... .......++.+++.++. +..+...........+.+ + +++.+++. ...|++||+.+++.++.
T Consensus 222 ~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 222 DKQDPA---TADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp -----C---CCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEE
T ss_pred CcCCcc---ccccceeEEEEeccCCc---EEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEE
Confidence 211100 00012224446665544 222111111222333434 3 44455544 35899999988887666
Q ss_pred eCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 392 FPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 392 l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+. .+..+.++++++.+++. + . -..++++|+
T Consensus 291 ~~~~~-~~~~~~~s~dg~~l~~~-~-~--~~~v~v~d~ 323 (349)
T 1jmx_B 291 ANLDH-TYYCVAFDKKGDKLYLG-G-T--FNDLAVFNP 323 (349)
T ss_dssp EECSS-CCCEEEECSSSSCEEEE-S-B--SSEEEEEET
T ss_pred EcCCC-CccceEECCCCCEEEEe-c-C--CCeEEEEec
Confidence 65442 23467788898888773 2 2 268999999
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.9e-09 Score=110.34 Aligned_cols=236 Identities=12% Similarity=0.144 Sum_probs=146.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++|||||++|+..... ..|++||. +++.+. ..........+.|+||++.|+....+.
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~d-----g~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------- 171 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVEN-----GELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN----------- 171 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETT-----SCEEEEET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTC-----------
T ss_pred CceEEEEEcCCCCEEEEEeCC-----CeEEEEeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecCC-----------
Confidence 358899999999999976542 25899994 444322 222222346899999999888766432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCC-------------eeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGR-------------SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 287 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~-------------~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~ 287 (734)
.|+++++.++.. +..+...... .....+.|+|++..++ . .....|++||+.++.
T Consensus 172 -----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~g~i~~~d~~~~~- 238 (425)
T 1r5m_A 172 -----VTILWNVISGTV--MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI-P----GPKGAIFVYQITEKT- 238 (425)
T ss_dssp -----CEEEEETTTTEE--EEEECCC---------------CCCBSCCEEEETTEEEE-E----CGGGCEEEEETTCSS-
T ss_pred -----eEEEEECCCCcE--EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEE-E----cCCCeEEEEEcCCCc-
Confidence 577888765431 1122211110 0145678999987443 2 223689999998731
Q ss_pred CcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEE
Q psy4818 288 GKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKL 366 (734)
Q Consensus 288 ~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 366 (734)
....+.......... |+|+++.|+..+. +..|..+|+.++.. ...+ ... ...+..+.+..++ +
T Consensus 239 -------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~--~~~~-~~~-~~~i~~~~~~~~~-~ 302 (425)
T 1r5m_A 239 -------PTGKLIGHHGPISVLEFNDTNKLLLSASD----DGTLRIWHGGNGNS--QNCF-YGH-SQSIVSASWVGDD-K 302 (425)
T ss_dssp -------CSEEECCCSSCEEEEEEETTTTEEEEEET----TSCEEEECSSSBSC--SEEE-CCC-SSCEEEEEEETTT-E
T ss_pred -------eeeeeccCCCceEEEEECCCCCEEEEEcC----CCEEEEEECCCCcc--ceEe-cCC-CccEEEEEECCCC-E
Confidence 222222222233333 9999987776553 24589999877542 2333 322 2344555555545 5
Q ss_pred EEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 367 IVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 367 ~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+++...+ ..|++||+.+++.+..+......+..+.++++++.++..... ..+..||+
T Consensus 303 l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~ 359 (425)
T 1r5m_A 303 VISCSMD--GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD----GQVNVYDL 359 (425)
T ss_dssp EEEEETT--SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT----SCEEEEEC
T ss_pred EEEEeCC--CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC----CeEEEEEC
Confidence 5555555 479999998888777776656667788889988766654332 46889998
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-12 Score=138.99 Aligned_cols=221 Identities=20% Similarity=0.182 Sum_probs=127.6
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCC---CCcCCccccHHHHHHHHhcC-eEEEEEecccCC-CCCchhhhcc
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY---GVSVLPTFSISRCMFLRHFN-GIYAIPNIRGGG-ELGEDWHNAG 540 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~~l~~~G-~~v~~~~~rG~~-~~g~~~~~~~ 540 (734)
+.|. +.+.++.|+. ..++.|+||++|||. ++.....+.. ..|+++| ++|+.+|||.+. ||+..-....
T Consensus 81 ~edc--l~l~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~---~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~ 153 (498)
T 2ogt_A 81 SEDG--LYLNIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDG---TAFAKHGDVVVVTINYRMNVFGFLHLGDSFG 153 (498)
T ss_dssp BSCC--CEEEEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCC---HHHHHHHTCEEEEECCCCHHHHCCCCTTTTC
T ss_pred CCCC--cEEEEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCH---HHHHhCCCEEEEeCCCcCchhhccCchhhcc
Confidence 4455 4566677863 356789999999986 3333322332 3344445 999999999421 2332111100
Q ss_pred --ccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcchh-cccccc-
Q psy4818 541 --RLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGALDM-LRFNKF- 611 (734)
Q Consensus 541 --~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~d~-~~~~~~- 611 (734)
....+...+.|+.++++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|..+. ......
T Consensus 154 ~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~ 233 (498)
T 2ogt_A 154 EAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGSLLLRSPETA 233 (498)
T ss_dssp GGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTTTCBCHHHH
T ss_pred ccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCccccccCHHHH
Confidence 11122345789999999998762 26999999999999999999888752 4689999999997652 111000
Q ss_pred -ccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCc
Q psy4818 612 -TIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690 (734)
Q Consensus 612 -~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~ 690 (734)
..........|-+. +..+-|++.++.+-+.... ... | .+.....-|..+-+.+..++.++-+.. ++|
T Consensus 234 ~~~~~~~~~~~gc~~--~~~~~Lr~~~~~~l~~~~~-~~~-~-~~~f~PvvDg~~lp~~p~~~~~~g~~~-------~vp 301 (498)
T 2ogt_A 234 MAMTERILDKAGIRP--GDRERLLSIPAEELLRAAL-SLG-P-GVMYGPVVDGRVLRRHPIEALRYGAAS-------GIP 301 (498)
T ss_dssp HHHHHHHHHHHTCCT--TCHHHHHHSCHHHHHHHHH-TTT-T-SCCCCCBCCSSSCCSCHHHHHHTTTTT-------TCC
T ss_pred HHHHHHHHHHhCCCH--HHHHHHHcCCHHHHHHHHh-hcc-C-CCceeeeeCCcccccCHHHHHhcCCCC-------CCC
Confidence 00001112234332 2233344443322111100 000 1 122334456667777776555433323 789
Q ss_pred EEEEEeCCCCCCCCC
Q psy4818 691 LLLRVEQDAGHGQGT 705 (734)
Q Consensus 691 ~~~~~~~~~gH~~~~ 705 (734)
+.+-...+||+.+..
T Consensus 302 ~liG~~~~Eg~~f~~ 316 (498)
T 2ogt_A 302 ILIGVTKDEYNLFTL 316 (498)
T ss_dssp EEEEEETTHHHHTTT
T ss_pred EEEEEeccchhhhhc
Confidence 999999999987754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-09 Score=110.19 Aligned_cols=242 Identities=10% Similarity=0.049 Sum_probs=142.7
Q ss_pred EEeeEEeCCCC-cEEEEEEeCCCCceEEEEEEECCCCCccccc---ccccccCeeEEEc-CCcEEEEEEEecCCCCCCCC
Q psy4818 143 ALKLYAFSDNG-KHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---LKNVKFPSISWTH-DHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 143 ~~~~~~~SPDG-~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~~~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~~~ 217 (734)
.+..++||||| ++||.... . ..|++||+.+++..... .....+..+.|+| |++.|+....+
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--------- 140 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSK-G----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR--------- 140 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEB-T----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT---------
T ss_pred CEEEEEECCCCCCEEEEEcC-C----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC---------
Confidence 37789999999 77776554 3 35999999988754321 1222346899999 55655555432
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEec-CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEF-PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
..|.+|++.+. ....+.. ......+..+.|+|||++|+.... ...|++||+.+ ...
T Consensus 141 -------~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~---------~~~ 197 (383)
T 3ei3_B 141 -------GATTLRDFSGS---VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----TGRLLLLGLDG---------HEI 197 (383)
T ss_dssp -------TEEEEEETTSC---EEEEEECCCCSSCCEEEEEEETTTTEEEEEET----TSEEEEEETTS---------CEE
T ss_pred -------CEEEEEECCCC---ceEEEeccCCCCCCeEEEEECCCCCEEEEECC----CCCEEEEECCC---------CEE
Confidence 26888998753 2222222 222245678999999999875432 26899999954 122
Q ss_pred eeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCC-CCceEeecCCCCceeEEEEEee-CCEEEEEEEeC
Q psy4818 297 KTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCE-KNWKTLIPEDENRTLDVVAAVA-NNKLIVHYIQN 373 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 373 (734)
..+.......... |+|+++.+++.+.. +..|..+|+.+... ......+.+ ...+..+.+.. ++.++++...+
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSV---DATVKLWDLRNIKDKNSYIAEMPH--EKPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEET---TSEEEEEEGGGCCSTTCEEEEEEC--SSCEEEEEECTTTSCEEEEEESS
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeC---CCEEEEEeCCCCCcccceEEEecC--CCceEEEEEcCCCCCEEEEEcCC
Confidence 3333333333343 99999854444433 34699999976321 113333333 23455565554 46666666655
Q ss_pred CceeEEEEECCCCceeeeeCCC-------CceEEeeccCcccceEEEEEe-----cCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLD-------LGQITHISGRRKYNEVFYGFT-----SFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~-------~g~v~~~~~~~d~~~l~~~~s-----s~~~P~~~~~~d~ 429 (734)
..|++||+.+++.+..+... ...+ ...+++++..+.+.++ +...-..+++||+
T Consensus 273 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 273 --NEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI-KATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDA 337 (383)
T ss_dssp --SEEEEEETTBTTSCSEEEECCBCCCTTSCCC-CCEECSSSSEEEEECBCCTTTCTTCCCCEEEEET
T ss_pred --CcEEEEECCCCccccccccccccccccccce-EEeccCCCCceEEEecCCcccccCCCCeEEEEec
Confidence 47999999877754444311 1111 1234444544444433 2223467889998
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-10 Score=112.51 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=76.4
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.++..... +..|.||++||.++.... |.. ....|+ .||.|+++|+||.|... ..........
T Consensus 12 ~~~~~~~~~~~--------g~g~~~vllHG~~~~~~~--w~~-~~~~l~-~~~~vi~~Dl~G~G~s~---~~~~~~~~~~ 76 (291)
T 3qyj_A 12 TTEARINLVKA--------GHGAPLLLLHGYPQTHVM--WHK-IAPLLA-NNFTVVATDLRGYGDSS---RPASVPHHIN 76 (291)
T ss_dssp CSSCEEEEEEE--------CCSSEEEEECCTTCCGGG--GTT-THHHHT-TTSEEEEECCTTSTTSC---CCCCCGGGGG
T ss_pred cCCeEEEEEEc--------CCCCeEEEECCCCCCHHH--HHH-HHHHHh-CCCEEEEEcCCCCCCCC---CCCCCccccc
Confidence 36777765431 345778999998766544 333 235666 49999999999955432 1111111112
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
...+++...+..+++. ...+++.++|||+||+++..++.++|++++++|+..+
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (291)
T 3qyj_A 77 YSKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129 (291)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence 3444544444444443 1235799999999999999999999999999887653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-09 Score=122.21 Aligned_cols=240 Identities=11% Similarity=0.043 Sum_probs=151.0
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC----Cccccc-ccccc-cCeeEEEc--CCcEEEEEEEecCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG----KDYPEV-LKNVK-FPSISWTH--DHKGFFYNQYCDINGT 213 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g----~~~~~~-~~~~~-~~~~~wSp--Dg~~l~y~~~~~~~~~ 213 (734)
..+..++|||||++||+..+ ..|.+||++++ +.+... ..... +..++|+| ||+.|+....+.
T Consensus 19 ~~v~~~~~spdg~~l~~~~~------~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg---- 88 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCG------KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG---- 88 (615)
T ss_dssp TCCCCCEEETTTTEEEEEET------TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS----
T ss_pred CceeEEEECCCCCEEEEecC------CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCC----
Confidence 34678999999999999872 26999999988 543222 22223 46899999 999888766432
Q ss_pred CCCCcccccCCcEEEEEECCCC------CCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTE------QDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 287 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~------~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~ 287 (734)
.|.+|++.++ ... .+.........+..+.|+|||++|+...........|++||...
T Consensus 89 ------------~v~vw~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--- 151 (615)
T 1pgu_A 89 ------------KVIVWGWTFDKESNSVEVN--VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--- 151 (615)
T ss_dssp ------------EEEEEEEEEEGGGTEEEEE--EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---
T ss_pred ------------EEEEEeCCCCccccccccc--ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---
Confidence 6777777543 111 22222222335678999999999987765433336788888332
Q ss_pred CcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc---eeEEEEEeeC
Q psy4818 288 GKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR---TLDVVAAVAN 363 (734)
Q Consensus 288 ~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~ 363 (734)
....+.......... |+|+++.+++.... +..|..+|+.+.. ....+... .. .+..+.+..+
T Consensus 152 -------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~v~vwd~~~~~---~~~~~~~~-~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 152 -------SLGEVSGHSQRINACHLKQSRPMRSMTVGD---DGSVVFYQGPPFK---FSASDRTH-HKQGSFVRDVEFSPD 217 (615)
T ss_dssp -------EEEECCSCSSCEEEEEECSSSSCEEEEEET---TTEEEEEETTTBE---EEEEECSS-SCTTCCEEEEEECST
T ss_pred -------cceeeecCCccEEEEEECCCCCcEEEEEeC---CCcEEEEeCCCcc---eeeeeccc-CCCCceEEEEEECCC
Confidence 122222222333333 89998854444433 3568999987654 22233322 23 4556666655
Q ss_pred -CEEEEEEEeCCceeEEEEECCCCceeeee-C---CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 364 -NKLIVHYIQNVRSVMDLHDLNTGKRLHSF-P---LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 -~~l~~~~~~~~~~~l~~~dl~~g~~~~~l-~---~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.++++...+ ..|++||+.+++.+..+ . ...+.+..+.++ ++..++. .+.. ..+..+|+
T Consensus 218 ~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~d---~~i~~wd~ 281 (615)
T 1pgu_A 218 SGEFVITVGSD--RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT-VGAD---ATIRVWDV 281 (615)
T ss_dssp TCCEEEEEETT--CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE-EETT---SEEEEEET
T ss_pred CCCEEEEEeCC--CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE-EcCC---CcEEEEEC
Confidence 5666666555 47999999889887777 3 445667788887 6655544 3332 46899998
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-09 Score=111.98 Aligned_cols=245 Identities=11% Similarity=-0.006 Sum_probs=144.9
Q ss_pred EEeCCCCcEEEEEEeCC------CCceEEEEEEECCCCCcc-c-c----cc----cccccCeeEEEcCCcEEEEEEEecC
Q psy4818 147 YAFSDNGKHFAYCLSKS------GSDWNTLHIKDVDTGKDY-P-E----VL----KNVKFPSISWTHDHKGFFYNQYCDI 210 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~------g~~~~~l~v~dl~~g~~~-~-~----~~----~~~~~~~~~wSpDg~~l~y~~~~~~ 210 (734)
.+++|+++.++...+.+ |+....+++|++.++... . . .. .......++|||||+.|+..+..
T Consensus 77 ~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~-- 154 (365)
T 4h5i_A 77 TAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK-- 154 (365)
T ss_dssp CEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC--
T ss_pred EEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC--
Confidence 35677888887765432 333456777776654311 0 0 00 00011358999999998876632
Q ss_pred CCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcc
Q psy4818 211 NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290 (734)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l 290 (734)
....|++|++.+... +..++. ...+.+++|||||++|+... + ..+.+++..++.
T Consensus 155 ------------~d~~i~iwd~~~~~~--~~~~~~---~~~V~~v~fspdg~~l~s~s----~-~~~~~~~~~~~~---- 208 (365)
T 4h5i_A 155 ------------VPAIMRIIDPSDLTE--KFEIET---RGEVKDLHFSTDGKVVAYIT----G-SSLEVISTVTGS---- 208 (365)
T ss_dssp ------------SSCEEEEEETTTTEE--EEEEEC---SSCCCEEEECTTSSEEEEEC----S-SCEEEEETTTCC----
T ss_pred ------------CCCEEEEeECCCCcE--EEEeCC---CCceEEEEEccCCceEEecc----c-eeEEEEEeccCc----
Confidence 133789999887542 222222 22356799999999998643 1 356677766621
Q ss_pred cCCCCceeee-cccc-ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCc-eEeecCCCCceeEEEEEeeCCEE
Q psy4818 291 SGKFPLKTVI-PGMD-HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNW-KTLIPEDENRTLDVVAAVANNKL 366 (734)
Q Consensus 291 ~~~~~~~~l~-~~~~-~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~l 366 (734)
...... .... ..... |+|||+.++..+........+..+++........ ...+... ...+..+.+..++.+
T Consensus 209 ----~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 209 ----CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGEL 283 (365)
T ss_dssp ----EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCE
T ss_pred ----ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCc
Confidence 111111 1111 12223 9999998887766544445677787765431000 0112222 234455555555777
Q ss_pred EEEEEeCCceeEEEEECCCCceeeee-CCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCC
Q psy4818 367 IVHYIQNVRSVMDLHDLNTGKRLHSF-PLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIP 430 (734)
Q Consensus 367 ~~~~~~~~~~~l~~~dl~~g~~~~~l-~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~ 430 (734)
+++...+ ..|++||+.+++.++.+ ....+.|.+++++||++.| ++.+... .+.++|++
T Consensus 284 lasgs~D--~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l-aS~S~D~---tvrvw~ip 342 (365)
T 4h5i_A 284 AVLASND--NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV-ASVSAAN---TIHIIKLP 342 (365)
T ss_dssp EEEEETT--SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE-EEEETTS---EEEEEECC
T ss_pred eEEEcCC--CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE-EEEeCCC---eEEEEEcC
Confidence 7777766 46999999999887765 4557778899999998654 4555443 68888883
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=113.87 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=132.8
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV 175 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl 175 (734)
..++|.++|...... ..-.+|..+..++..+.+..... .+ .+..++|||||++|+++...+ ..|++||+
T Consensus 45 ~spdg~~l~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~s~dg~~l~~~~~~~----~~i~~~d~ 113 (343)
T 1ri6_A 45 VSPDKRYLYVGVRPE--FRVLAYRIAPDDGALTFAAESAL---PG--SLTHISTDHQGQFVFVGSYNA----GNVSVTRL 113 (343)
T ss_dssp ECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEEC---SS--CCSEEEECTTSSEEEEEETTT----TEEEEEEE
T ss_pred ECCCCCEEEEeecCC--CeEEEEEecCCCCceeecccccc---CC--CCcEEEEcCCCCEEEEEecCC----CeEEEEEC
Confidence 346788777765442 33445655533444443322211 11 356789999999988776533 35888888
Q ss_pred CCCC---cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCC-CCCCCee--EEecCCCC
Q psy4818 176 DTGK---DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGT-EQDKDIP--VVEFPNGR 249 (734)
Q Consensus 176 ~~g~---~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t-~~~~~~~--v~~~~~~~ 249 (734)
..|. .+...........++|+|||+.|+..... ...|+++++.+ +...... .......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~- 177 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK---------------QDRICLFTVSDDGHLVAQDPAEVTTVEG- 177 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG---------------GTEEEEEEECTTSCEEEEEEEEEECSTT-
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCC---------------CCEEEEEEecCCCceeeecccccccCCC-
Confidence 4332 22222222234678999999988766521 22688888875 3211111 1222211
Q ss_pred eeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc---ccceE-EEEEecCCeEEEEeCCCC
Q psy4818 250 SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG---MDHHH-EIIANNGPELIVKTTKNA 325 (734)
Q Consensus 250 ~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~---~~~~~-~~~s~dg~~l~~~s~~~~ 325 (734)
.....+.|+|||++|++... ....|.+|++.. ....+........+..+ ..... ..|+|||+.||+....
T Consensus 178 ~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-- 251 (343)
T 1ri6_A 178 AGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-- 251 (343)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--
T ss_pred CCcceEEECCCCCEEEEEeC---CCCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC--
Confidence 23456899999999887642 226789999854 11111000000000011 01111 2399999988765532
Q ss_pred CCceEEEEecC--CCCCCCceEeecCCCCceeEEEEEeeCC-EEEEEEEeCCceeEEEEECCCCce
Q psy4818 326 PKGKVVTINLN--NPCEKNWKTLIPEDENRTLDVVAAVANN-KLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 326 ~~~~l~~~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
...|.+++++ ++... ....++.. .. +..+.+..++ .+++....++.-.++.+|..+|+.
T Consensus 252 -~~~i~v~d~~~~~~~~~-~~~~~~~~-~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 252 -ASLITVFSVSEDGSVLS-KEGFQPTE-TQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp -TTEEEEEEECTTSCCEE-EEEEEECS-SS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred -CCEEEEEEEcCCCCceE-EeeeecCC-Cc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 3468888876 33211 11122222 22 3344444334 455544344433444457766753
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-09 Score=111.28 Aligned_cols=243 Identities=11% Similarity=-0.001 Sum_probs=146.5
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC--cccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK--DYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~--~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.+..++|||||++||.... ...|++||+.+++ .+.. ......+..+.|+|||+.|+....+.
T Consensus 10 ~i~~~~~s~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg---------- 74 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR---------- 74 (372)
T ss_dssp CCCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS----------
T ss_pred CeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC----------
Confidence 3678999999999987643 2479999999885 3221 12222346899999999888766432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|++|++.+... ............+..+.|+|||++|+..... ..|++||+.++.... ....+
T Consensus 75 ------~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~-----~~~~~ 137 (372)
T 1k8k_C 75 ------NAYVWTLKGRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWW-----VCKHI 137 (372)
T ss_dssp ------CEEEEEEETTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEE-----EEEEE
T ss_pred ------eEEEEECCCCee--eeeEEeecCCCceeEEEECCCCCEEEEEeCC----CEEEEEEecCCCcce-----eeeee
Confidence 577788765431 1122222233356789999999998865432 568888887621100 01111
Q ss_pred ecc-ccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC---------------CCCceEeecCCCCceeEEEEEee
Q psy4818 300 IPG-MDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC---------------EKNWKTLIPEDENRTLDVVAAVA 362 (734)
Q Consensus 300 ~~~-~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~---------------~~~~~~l~~~~~~~~~~~~~~~~ 362 (734)
... ....... |+|+++.|+..+.. ..|..+|+.... .......+... ...+..+.+..
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~ 212 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSA 212 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECS
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCC----CCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEEEEECC
Confidence 121 1222333 89998877765542 458888864210 00122222222 23455555554
Q ss_pred CCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 363 NNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.++++...+ ..|++||+.+++.+..+......+..+.+++++..++ .. + -..++.|++
T Consensus 213 ~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~---d~~i~i~~~ 272 (372)
T 1k8k_C 213 NGSRVAWVSHD--STVCLADADKKMAVATLASETLPLLAVTFITESSLVA-AG-H---DCFPVLFTY 272 (372)
T ss_dssp SSSEEEEEETT--TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE-EE-T---TSSCEEEEE
T ss_pred CCCEEEEEeCC--CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEE-EE-e---CCeEEEEEc
Confidence 45566666555 4799999988888777776666677888888875443 32 2 235677777
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-11 Score=134.46 Aligned_cols=133 Identities=20% Similarity=0.148 Sum_probs=93.8
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccHHHHHHHHhcCeEEEEEecc-cCCCCCchhhhccccc
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSISRCMFLRHFNGIYAIPNIR-GGGELGEDWHNAGRLL 543 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~r-G~~~~g~~~~~~~~~~ 543 (734)
+.|. +.+.++.|+....+++.|+||++|||....... .|... .++.+.|++|+.+||| |..+|+..... ..
T Consensus 95 ~edc--l~lnv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~~--~la~~~g~vvv~~nYRlg~~gf~~~~~~---~~ 167 (542)
T 2h7c_A 95 SEDC--LYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGL--ALAAHENVVVVTIQYRLGIWGFFSTGDE---HS 167 (542)
T ss_dssp ESCC--CEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCH--HHHHHHTCEEEEECCCCHHHHHCCCSST---TC
T ss_pred CCCC--cEEEEEECCCCCCCCCCCEEEEECCCcccCCCccccCHH--HHHhcCCEEEEecCCCCccccCCCCCcc---cC
Confidence 4455 456678898754457899999999985433221 24332 3444469999999999 43333322111 11
Q ss_pred cCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcchh
Q psy4818 544 KKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGALDM 605 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~d~ 605 (734)
.+...+.|+.++++|+.++ ...||+||.|+|+|+||++++.++.. .+.+|+++|+.+|....
T Consensus 168 ~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 168 RGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 2233478999999999775 23799999999999999999999876 36799999999997653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.13 E-value=6e-10 Score=115.61 Aligned_cols=251 Identities=11% Similarity=-0.005 Sum_probs=141.7
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC----CC---ceE
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS----GS---DWN 168 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~----g~---~~~ 168 (734)
..++|+++|+..... ..+++.+..++.....+...... ........++|||||++|+++.... +. ...
T Consensus 41 ~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 41 VAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPE-ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp ECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTT-EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred EcCCCCEEEEEeCCC----CeEEEEECCCCCeEeeEEcCCcc-cccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 346777777765332 24666665555544333322100 0001234689999999998875321 00 125
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG 248 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~ 248 (734)
.|+++|+++++.+.....+.....++|||||+.|++. +. .|+++++.++.. +..+.....
T Consensus 116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~----------------~i~~~d~~~~~~--~~~~~~~~~ 175 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GR----------------DLHVMDPEAGTL--VEDKPIQSW 175 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SS----------------SEEEEETTTTEE--EEEECSTTT
T ss_pred eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CC----------------eEEEEECCCCcE--eeeeecccc
Confidence 8999999998764332222234678999999998877 21 588888876532 112222110
Q ss_pred CeeEEEEEEecCCcEEEEEEecCCC--------------------CceEEEEeCCCCCCCcccCCCCceeeeccccceEE
Q psy4818 249 RSLGLHSEVTDCGRYLLVSTSNNTQ--------------------GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE 308 (734)
Q Consensus 249 ~~~~~~~~~SpDG~~l~~~~~~~~~--------------------~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~ 308 (734)
. ....|+|||++|++....... ...|+++|+.++.. ....+.........
T Consensus 176 ~---~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~ 245 (337)
T 1pby_B 176 E---AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-------AMREVRIMDVFYFS 245 (337)
T ss_dssp T---TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-------EEEEEEECSSCEEE
T ss_pred C---CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-------eEeecCCCCCceee
Confidence 1 124789999988654321110 01688999987321 00111111111222
Q ss_pred -EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCC
Q psy4818 309 -IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTG 386 (734)
Q Consensus 309 -~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g 386 (734)
.|+|||+.+|+. +..|+++|+++++ ....+... .. ...+.+. +++.+++. .. ...|.+||++++
T Consensus 246 ~~~s~dg~~l~~~------~~~v~~~d~~~~~---~~~~~~~~-~~-~~~~~~s~dg~~l~~~-~~--~~~i~v~d~~~~ 311 (337)
T 1pby_B 246 TAVNPAKTRAFGA------YNVLESFDLEKNA---SIKRVPLP-HS-YYSVNVSTDGSTVWLG-GA--LGDLAAYDAETL 311 (337)
T ss_dssp EEECTTSSEEEEE------ESEEEEEETTTTE---EEEEEECS-SC-CCEEEECTTSCEEEEE-SB--SSEEEEEETTTC
T ss_pred EEECCCCCEEEEe------CCeEEEEECCCCc---CcceecCC-Cc-eeeEEECCCCCEEEEE-cC--CCcEEEEECcCC
Confidence 399999988876 2469999998764 23333322 22 2334444 43445553 32 368999999889
Q ss_pred ceeeeeCCC
Q psy4818 387 KRLHSFPLD 395 (734)
Q Consensus 387 ~~~~~l~~~ 395 (734)
+.+..+..+
T Consensus 312 ~~~~~~~~~ 320 (337)
T 1pby_B 312 EKKGQVDLP 320 (337)
T ss_dssp CEEEEEECG
T ss_pred cEEEEEEcC
Confidence 887777654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-09 Score=113.76 Aligned_cols=252 Identities=11% Similarity=0.073 Sum_probs=123.2
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
.++|. +|.....++.. .+++.+..++..+.+...... ......++|||||++|+++...+| .|.+|++.
T Consensus 48 spdg~-l~~~~~~~~~~--~v~~~~~~~g~~~~~~~~~~~----~~~p~~~a~spdg~~l~~~~~~~~----~v~v~~~~ 116 (347)
T 3hfq_A 48 SAKDC-LYSVDKEDDEG--GIAAWQIDGQTAHKLNTVVAP----GTPPAYVAVDEARQLVYSANYHKG----TAEVMKIA 116 (347)
T ss_dssp CTTCE-EEEEEEETTEE--EEEEEEEETTEEEEEEEEEEE----SCCCSEEEEETTTTEEEEEETTTT----EEEEEEEC
T ss_pred ccCCe-EEEEEecCCCc--eEEEEEecCCcEEEeeeeecC----CCCCEEEEECCCCCEEEEEeCCCC----EEEEEEeC
Confidence 35676 76665543232 344443334444443321100 112457899999999887764332 58888874
Q ss_pred -CCCcccc-cc--cc---------cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCC-CCCCCeeE
Q psy4818 177 -TGKDYPE-VL--KN---------VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGT-EQDKDIPV 242 (734)
Q Consensus 177 -~g~~~~~-~~--~~---------~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t-~~~~~~~v 242 (734)
+|..... .. .+ .....++|+|||+ ++.+.. ....|+++++.. +.......
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~---------------~~~~v~~~~~~~~g~~~~~~~ 180 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL---------------GSDKVYVYNVSDAGQLSEQSV 180 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET---------------TTTEEEEEEECTTSCEEEEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC---------------CCCEEEEEEECCCCcEEEeee
Confidence 4432111 11 00 0123589999999 554432 123688888873 22111111
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc------cceEE-EEEecCC
Q psy4818 243 VEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM------DHHHE-IIANNGP 315 (734)
Q Consensus 243 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~------~~~~~-~~s~dg~ 315 (734)
+...... ....++|||||++|++.... ...+++++++. ....++ ....+.... ..... .|+|||+
T Consensus 181 ~~~~~g~-~p~~~~~spdg~~l~v~~~~---~~~v~v~~~~~-~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 181 LTMEAGF-GPRHLVFSPDGQYAFLAGEL---SSQIASLKYDT-QTGAFT---QLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp EECCTTC-CEEEEEECTTSSEEEEEETT---TTEEEEEEEET-TTTEEE---EEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred EEcCCCC-CCceEEECCCCCEEEEEeCC---CCEEEEEEecC-CCCceE---EeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 1221111 23468999999998875432 24666666653 111110 001111000 11122 3999999
Q ss_pred eEEEEeCCCCCCceEEEEecCCC-CCCCceEeecCCCCceeEEEEEeeCC-EEEEEEEeCCceeEEEEECCCCce
Q psy4818 316 ELIVKTTKNAPKGKVVTINLNNP-CEKNWKTLIPEDENRTLDVVAAVANN-KLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 316 ~l~~~s~~~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
+||+.... ...|.+++++.. ... ....++.. ......+.+..++ .+++....++.-.++.+|.++|+.
T Consensus 253 ~l~v~~~~---~~~v~v~~~~~~g~~~-~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 253 FLYVSNRG---YNTLAVFAVTADGHLT-LIQQISTE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEEEEET---TTEEEEEEECGGGCEE-EEEEEECS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEeCC---CCEEEEEEECCCCcEE-EeEEEecC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 88876543 245777777522 210 11122221 1222344444434 455544444433455557777775
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-08 Score=106.61 Aligned_cols=252 Identities=12% Similarity=0.097 Sum_probs=130.6
Q ss_pred CcEEeCCeEEEEEEcC-CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEE
Q psy4818 95 APQRQENNYFYFHNKG-LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIK 173 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~ 173 (734)
...++|.++|.....+ ....-.+|..+..++..+.+...... + .....+++ ||++|+.+.... ..|.++
T Consensus 56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~---~-~~p~~~~~--dg~~l~~~~~~~----~~v~~~ 125 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM---G-ADPCYLTT--NGKNIVTANYSG----GSITVF 125 (361)
T ss_dssp EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS---S-SCEEEEEE--CSSEEEEEETTT----TEEEEE
T ss_pred EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC---C-CCcEEEEE--CCCEEEEEECCC----CEEEEE
Confidence 3457888888777642 23345567776544554444332111 1 11234455 999887665433 368899
Q ss_pred ECCCCCcccccc-----cc----------cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC-
Q psy4818 174 DVDTGKDYPEVL-----KN----------VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD- 237 (734)
Q Consensus 174 dl~~g~~~~~~~-----~~----------~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~- 237 (734)
++.+...+.... .+ .....++|||||+.|+++... ...|++++++....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---------------~~~v~v~~~~~~~~~ 190 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG---------------TDQIHKFNINPNANA 190 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT---------------TTEEEEEEECTTCCT
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC---------------CCEEEEEEEcCCCCc
Confidence 987543221110 00 011358999999998876531 22677777665432
Q ss_pred ---C-Ce-----eEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee---ccccc
Q psy4818 238 ---K-DI-----PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI---PGMDH 305 (734)
Q Consensus 238 ---~-~~-----~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~---~~~~~ 305 (734)
+ -. ......... ....++|||||++|++... ....|++|++.++.... ...+. .+...
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~---~~~~v~v~~~~~g~~~~------~~~~~~~~~~~~~ 260 (361)
T 3scy_A 191 DNKEKFLTKGTPEAFKVAPGS-GPRHLIFNSDGKFAYLINE---IGGTVIAFRYADGMLDE------IQTVAADTVNAQG 260 (361)
T ss_dssp TTCCCCEEEEEEEEEECCTTC-CEEEEEECTTSSEEEEEET---TTCEEEEEEEETTEEEE------EEEEESCSSCCCC
T ss_pred ccccceeecccccceecCCCC-CCeEEEEcCCCCEEEEEcC---CCCeEEEEEecCCceEE------eEEEecCCCCCCC
Confidence 1 00 112222222 3357899999999887542 22578888887631100 11111 11111
Q ss_pred eEE-EEEecCCeEEEEeCCCCCCceEEEEecC--CCCCCCceEe--ecCCCCceeEEEEEeeCC-EEEEEEEeCCceeEE
Q psy4818 306 HHE-IIANNGPELIVKTTKNAPKGKVVTINLN--NPCEKNWKTL--IPEDENRTLDVVAAVANN-KLIVHYIQNVRSVMD 379 (734)
Q Consensus 306 ~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~~~~~~~~l--~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~ 379 (734)
... .|+|||++||+...... ..|.+++++ ++. ++.+ ++. ......+.+..++ .+++....++.-.++
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~--~~i~v~~~~~~~g~---~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKA--DGVAIFKVDETNGT---LTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSS--CEEEEEEECTTTCC---EEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred cccEEECCCCCEEEEECCCCC--CEEEEEEEcCCCCc---EEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 123 39999998876543212 235555553 443 2222 122 1222344444334 455554344444566
Q ss_pred EEECCCCce
Q psy4818 380 LHDLNTGKR 388 (734)
Q Consensus 380 ~~dl~~g~~ 388 (734)
.+|+++|+.
T Consensus 334 ~~d~~~g~~ 342 (361)
T 3scy_A 334 ERDQATGLL 342 (361)
T ss_dssp EECTTTCCE
T ss_pred EEECCCCcE
Confidence 678877875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-08 Score=105.95 Aligned_cols=242 Identities=12% Similarity=0.114 Sum_probs=142.6
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..++|||||++|+.... + ..|++||+.+++.+.... ....+..++|+|||+.|+....+.
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~-d----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---------- 203 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQ-D----MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG---------- 203 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEET-T----SEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS----------
T ss_pred cCccEEEEECCCCCEEEEEeC-C----CeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC----------
Confidence 345889999999998886553 2 479999999987654222 222346899999999888666432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCC-CC---------------------eeEEEEEEecCCcEEEEEEecCCCCceE
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPN-GR---------------------SLGLHSEVTDCGRYLLVSTSNNTQGSDL 277 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~-~~---------------------~~~~~~~~SpDG~~l~~~~~~~~~~~~i 277 (734)
.|.+|++.++.. +..+.... .. .....+.|||||++|+.... ...|
T Consensus 204 ------~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i 271 (420)
T 3vl1_A 204 ------TIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV----SGVI 271 (420)
T ss_dssp ------CEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET----TSCE
T ss_pred ------cEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC----CCeE
Confidence 577788765431 12222110 00 11223567899999875432 2579
Q ss_pred EEEeCCCCCCCcccCCCCceeeeccc-cceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCcee
Q psy4818 278 HYFDLHSLPDGKISGKFPLKTVIPGM-DHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTL 355 (734)
Q Consensus 278 ~~~d~~~~~~~~l~~~~~~~~l~~~~-~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 355 (734)
.+||+.++. ....+.... ...... |+|+++.+++.+.. +..|..||+.++.. ....+..+. ...+
T Consensus 272 ~i~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~-~~~~~~~~~-~~~v 338 (420)
T 3vl1_A 272 TVHNVFSKE--------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---NGMLAQWDLRSPEC-PVGEFLINE-GTPI 338 (420)
T ss_dssp EEEETTTCC--------EEEEECCTTSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTS-CSEEEEEST-TSCE
T ss_pred EEEECCCCc--------eeEEcccccCCCceeEEEeCCCCCEEEEEeC---CCeEEEEEcCCCcC-chhhhhccC-CCCc
Confidence 999998731 122222222 223333 99999844444433 35699999987541 134444333 4455
Q ss_pred EEEEEeeCCEEEEEEEeCCceeEEEEECCCCceee---------eeCCCCceEEeeccCcccc---eEEEEEecCCCCce
Q psy4818 356 DVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH---------SFPLDLGQITHISGRRKYN---EVFYGFTSFLQPGT 423 (734)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~---------~l~~~~g~v~~~~~~~d~~---~l~~~~ss~~~P~~ 423 (734)
..+.+.+ +.++++...+ ..+.+|++.+++..+ .+....+.+..+.+++++. .++...+. ..
T Consensus 339 ~~~~~~~-~~~l~s~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~----g~ 411 (420)
T 3vl1_A 339 NNVYFAA-GALFVSSGFD--TSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN----NF 411 (420)
T ss_dssp EEEEEET-TEEEEEETTT--EEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT----TE
T ss_pred eEEEeCC-CCEEEEecCC--ccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC----ce
Confidence 6665665 6677666555 578899986532211 1222234455667777776 55544432 35
Q ss_pred EEEEeC
Q psy4818 424 IYHCNI 429 (734)
Q Consensus 424 ~~~~d~ 429 (734)
+.+|++
T Consensus 412 ~~~~~~ 417 (420)
T 3vl1_A 412 CALYNL 417 (420)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 667776
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-08 Score=104.40 Aligned_cols=249 Identities=10% Similarity=0.044 Sum_probs=141.3
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc--ccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD--YPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~--~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
+...+..++|||||++||..... ..+.+||+.++.. +.. ......+..++|+|||+.|+....+.
T Consensus 60 h~~~v~~~~~sp~g~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------- 127 (345)
T 3fm0_A 60 HQRTVRKVAWSPCGNYLASASFD-----ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK------- 127 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------
T ss_pred cCCcEEEEEECCCCCEEEEEECC-----CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC-------
Confidence 34558899999999999866532 3588899877642 211 11122346899999999888776433
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
.|++|++.+.... ..+.....+...+..+.|+|||++|+....+ ..|.+|++.++.. ...
T Consensus 128 ---------~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d----~~i~~w~~~~~~~------~~~ 187 (345)
T 3fm0_A 128 ---------SVWVWEVDEEDEY-ECVSVLNSHTQDVKHVVWHPSQELLASASYD----DTVKLYREEEDDW------VCC 187 (345)
T ss_dssp ---------CEEEEEECTTSCE-EEEEEECCCCSCEEEEEECSSSSCEEEEETT----SCEEEEEEETTEE------EEE
T ss_pred ---------eEEEEECCCCCCe-EEEEEecCcCCCeEEEEECCCCCEEEEEeCC----CcEEEEEecCCCE------EEE
Confidence 5888888765321 1222222233356789999999988754322 4688888766210 001
Q ss_pred eeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC----------CceEe--ecCCCCceeEEEEEeeC
Q psy4818 297 KTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK----------NWKTL--IPEDENRTLDVVAAVAN 363 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~----------~~~~l--~~~~~~~~~~~~~~~~~ 363 (734)
..+.......... |+|+|+.|+..+.. ..|.+|+...+... .+..+ +.......+..+.+..+
T Consensus 188 ~~~~~h~~~v~~l~~sp~g~~l~s~s~D----~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 188 ATLEGHESTVWSLAFDPSGQRLASCSDD----RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred EEecCCCCceEEEEECCCCCEEEEEeCC----CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 1122222333333 99999887765543 34666664221100 01111 11111233444555444
Q ss_pred CEEEEEEEeCCceeEEEEECCCCcee---------eeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLNTGKRL---------HSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~~g~~~---------~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+++...++ .+.+|+...+... .......+.|..+.++|++..++++.+.. ..+..+++
T Consensus 264 ~~~l~s~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D---g~v~~W~~ 333 (345)
T 3fm0_A 264 TGALATACGDD--AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD---GEVAFWKY 333 (345)
T ss_dssp TCCEEEEETTS--CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT---SCEEEEEE
T ss_pred CCEEEEEeCCC--eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC---CcEEEEEe
Confidence 55566665554 5677776443210 11123356688899999886677666654 36888888
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=107.56 Aligned_cols=208 Identities=11% Similarity=0.049 Sum_probs=121.0
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc---cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE---VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~---~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..+..+.|||||++|+.... . ..|++||+++++.... .........+.|+||++.|+....+.
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~-d----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------- 118 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGT-D----RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR--------- 118 (372)
T ss_dssp SCEEEEEEETTTTEEEEEET-T----SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred CcccEEEEeCCCCEEEEEcC-C----CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC---------
Confidence 35789999999999987653 2 3599999988863221 11222346899999999888776432
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc---------
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK--------- 289 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~--------- 289 (734)
.|+++++.+.............+...+..+.|+|||++|+.... ...|++||+.......
T Consensus 119 -------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~ 187 (372)
T 1k8k_C 119 -------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC----DFKCRIFSAYIKEVEERPAPTPWGS 187 (372)
T ss_dssp -------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET----TSCEEEEECCCTTTSCCCCCBTTBS
T ss_pred -------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC----CCCEEEEEccccccccccccccccc
Confidence 46777766553211111111222335678999999999875432 2578999975310000
Q ss_pred -ccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 290 -ISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 290 -l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
+........+.......... |+|+++.|+..+. +..|..+|+.++. ....+... ...+..+.+..++.++
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 188 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DSTVCLADADKKM---AVATLASE-TLPLLAVTFITESSLV 259 (372)
T ss_dssp CCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TTEEEEEEGGGTT---EEEEEECS-SCCEEEEEEEETTEEE
T ss_pred ccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC----CCEEEEEECCCCc---eeEEEccC-CCCeEEEEEecCCCEE
Confidence 00001111111222222333 8999987776554 3469999997665 23333332 3344555555556766
Q ss_pred EEEEeCCceeEEEEECCC
Q psy4818 368 VHYIQNVRSVMDLHDLNT 385 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~~ 385 (734)
+.. .+ ..+++|++.+
T Consensus 260 ~~~-~d--~~i~i~~~~~ 274 (372)
T 1k8k_C 260 AAG-HD--CFPVLFTYDS 274 (372)
T ss_dssp EEE-TT--SSCEEEEEET
T ss_pred EEE-eC--CeEEEEEccC
Confidence 655 44 4577777755
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-10 Score=114.37 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=66.7
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHh-cCeEEEEEecccCCCCCchhhhccccccCCCchhH----HHHHHHHHHH
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRH-FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDD----FQAAAEYMIN 561 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D----~~~~~~~l~~ 561 (734)
..|+||++||+.++.. .|.. +...|++ .+|.|+++|+||.|.... . .....++++ +.+.++.|..
T Consensus 37 ~~p~lvllHG~~~~~~--~w~~-~~~~L~~~~~~~via~Dl~GhG~S~~---~----~~~~~~~~~~a~dl~~~l~~l~~ 106 (316)
T 3c5v_A 37 EGPVLLLLHGGGHSAL--SWAV-FTAAIISRVQCRIVALDLRSHGETKV---K----NPEDLSAETMAKDVGNVVEAMYG 106 (316)
T ss_dssp SSCEEEEECCTTCCGG--GGHH-HHHHHHTTBCCEEEEECCTTSTTCBC---S----CTTCCCHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCcccc--cHHH-HHHHHhhcCCeEEEEecCCCCCCCCC---C----CccccCHHHHHHHHHHHHHHHhc
Confidence 4578999999765443 3443 3455654 389999999999664321 1 011233444 4444544421
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCc
Q psy4818 562 KKYTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGA 602 (734)
Q Consensus 562 ~~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~ 602 (734)
+ . ++++.|+||||||++++.++.+ +|+ ++++|+..+.
T Consensus 107 -~-~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~ 145 (316)
T 3c5v_A 107 -D-L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV 145 (316)
T ss_dssp -T-C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred -c-C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence 1 1 2589999999999999999985 577 7888876653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-08 Score=103.39 Aligned_cols=235 Identities=13% Similarity=0.058 Sum_probs=140.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++.|+|+++.|.|+-... ..|+.+|.++++....... .....++|+|||+ |+... .
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~dG~-l~v~~-~--------------- 72 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPA----KKVCRWDSFTKQVQRVTMD-APVSSVALRQSGG-YVATI-G--------------- 72 (297)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETTTCCEEEEECS-SCEEEEEEBTTSS-EEEEE-T---------------
T ss_pred ccCCeEECCCCEEEEEECCC----CEEEEEECCCCcEEEEeCC-CceEEEEECCCCC-EEEEE-C---------------
Confidence 45899999988888765433 3699999998875322222 2346889999998 44433 1
Q ss_pred CcEEEEEECCCCCCCCeeEEecCC--CCeeEEEEEEecCCcEEEEEEecCC--------CCceEEEEeCCCCCCCcccCC
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPN--GRSLGLHSEVTDCGRYLLVSTSNNT--------QGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~ 293 (734)
..|++++..++..+ .+..... ......++.++|||+ |++...... ....||.++.++ .
T Consensus 73 -~~l~~~d~~~g~~~--~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~------- 140 (297)
T 3g4e_A 73 -TKFCALNWKEQSAV--VLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-H------- 140 (297)
T ss_dssp -TEEEEEETTTTEEE--EEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-C-------
T ss_pred -CeEEEEECCCCcEE--EEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-C-------
Confidence 16888888765321 2222211 122456788999999 444433211 125788888754 1
Q ss_pred CCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecC--CCCCCCceEeecCC-CCceeEEEEEeeCCEEEEE
Q psy4818 294 FPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLN--NPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVH 369 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~ 369 (734)
...+......... .|+|||+.+|+.... ..+|++++++ ++...+-+.+..-. .......+.+..++.+++.
T Consensus 141 --~~~~~~~~~~pngi~~spdg~~lyv~~~~---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 141 --VKKYFDQVDISNGLDWSLDHKIFYYIDSL---SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp --EEEEEEEESBEEEEEECTTSCEEEEEEGG---GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred --EEEEeeccccccceEEcCCCCEEEEecCC---CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 1222222222222 399999988876543 3468888863 33210011122111 1123445555555677766
Q ss_pred EEeCCceeEEEEECCCCceeeeeCCCCceEEeeccC-cccceEEEEEecCC
Q psy4818 370 YIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGR-RKYNEVFYGFTSFL 419 (734)
Q Consensus 370 ~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~-~d~~~l~~~~ss~~ 419 (734)
...+ ..|+++|.++|+.+..+..+...+.++.+. ++++.|+++.....
T Consensus 216 ~~~~--~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 216 CYNG--GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EETT--TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred EcCC--CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 5443 469999997799888887775556677776 78888988876543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-09 Score=116.75 Aligned_cols=238 Identities=8% Similarity=0.073 Sum_probs=135.0
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-----cccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-----VKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-----~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
..+..++|||||++||-... +| .+.+||.++ .+...... ..+..++|||||+.|+....+.
T Consensus 86 ~~V~~vawSPdG~~LAs~s~-dg----~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DG------- 151 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSN-NG----NVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDG------- 151 (588)
T ss_dssp CCEEEEEECSSSSCEEEEET-TS----CEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTS-------
T ss_pred CcEEEEEECCCCCEEEEEeC-CC----cEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCC-------
Confidence 34889999999999996654 32 488898544 21110111 1246899999999998877543
Q ss_pred CcccccCCcEEEEEECCCCCCCCe---eEEec----CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDI---PVVEF----PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK 289 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~---~v~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 289 (734)
.|.+|++.++..... .+... ..+..++..++||||| |+..+ ..+.+++|++.++...
T Consensus 152 ---------tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass----~D~tVrlWd~~~~~~~- 215 (588)
T 2j04_A 152 ---------ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL----SNNSVFSMTVSASSHQ- 215 (588)
T ss_dssp ---------EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE----TTCCEEEECCCSSSSC-
T ss_pred ---------EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe----CCCeEEEEECCCCccc-
Confidence 788899887532111 12221 2234588999999999 44322 2368999999873210
Q ss_pred ccCCCCceeeecc-ccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE--eeCCE
Q psy4818 290 ISGKFPLKTVIPG-MDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA--VANNK 365 (734)
Q Consensus 290 l~~~~~~~~l~~~-~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~ 365 (734)
..+..+..+ ....... |+ |+.|+..+ ...|..|++.++. ...+..+ ....+..+.+ ..++.
T Consensus 216 ----~~~~tL~~~h~~~V~svaFs--g~~LASa~-----~~tIkLWd~~~~~---~~~~~~g-h~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 216 ----PVSRMIQNASRRKITDLKIV--DYKVVLTC-----PGYVHKIDLKNYS---ISSLKTG-SLENFHIIPLNHEKEST 280 (588)
T ss_dssp ----CCEEEEECCCSSCCCCEEEE--TTEEEEEC-----SSEEEEEETTTTE---EEEEECS-CCSCCCEEEETTCSSCE
T ss_pred ----cceeeecccccCcEEEEEEE--CCEEEEEe-----CCeEEEEECCCCe---EEEEEcC-CCceEEEEEeeeCCCCC
Confidence 011223212 2222222 77 56666443 1479999998765 2233323 2344555666 55456
Q ss_pred EEEEEEeCCceeEEEE-----ECC----------------CCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceE
Q psy4818 366 LIVHYIQNVRSVMDLH-----DLN----------------TGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTI 424 (734)
Q Consensus 366 l~~~~~~~~~~~l~~~-----dl~----------------~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~ 424 (734)
.++.+.++|. +|+.. ... .|+.+..+.. ...|.+++++|||..+++.+.= |..+
T Consensus 281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~i---~~~~ 355 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYDM---ERVA 355 (588)
T ss_dssp EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEEE---ECSS
T ss_pred EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEec---cCce
Confidence 6666666665 44443 210 1111111211 3346778888988777665532 4455
Q ss_pred EEEeC
Q psy4818 425 YHCNI 429 (734)
Q Consensus 425 ~~~d~ 429 (734)
..|..
T Consensus 356 ~~y~i 360 (588)
T 2j04_A 356 FKYKI 360 (588)
T ss_dssp CCCCC
T ss_pred eEEee
Confidence 55555
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-09 Score=108.67 Aligned_cols=241 Identities=7% Similarity=0.011 Sum_probs=137.7
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc----cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE----VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~----~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
.+..++|||||++||..... ..|++||++++..... ......+..++|||||+.|+....+.
T Consensus 18 ~v~~l~~sp~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------- 83 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------- 83 (345)
T ss_dssp CEEEEEECTTSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred cEEEEEECCCCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC---------
Confidence 36789999999999966532 3699999988753211 11112346899999999888776543
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.+.+|++.+...+ .+.....+...+..++|+|||++|+.... ...|++||+.++.... ....
T Consensus 84 -------~v~iw~~~~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~s~----D~~v~iwd~~~~~~~~-----~~~~ 145 (345)
T 3fm0_A 84 -------TTCIWKKNQDDFE--CVTTLEGHENEVKSVAWAPSGNLLATCSR----DKSVWVWEVDEEDEYE-----CVSV 145 (345)
T ss_dssp -------CEEEEEECCC-EE--EEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEECTTSCEE-----EEEE
T ss_pred -------cEEEEEccCCCeE--EEEEccCCCCCceEEEEeCCCCEEEEEEC----CCeEEEEECCCCCCeE-----EEEE
Confidence 4667776654322 22222233445678999999999885432 2578999987621100 0111
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCce--EeecCCCCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK--TLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
+.......... |+|+++.|+..+.. ..|.++++.++. +. ..+... ...+..+.+..++..+++...++
T Consensus 146 ~~~h~~~v~~~~~~p~~~~l~s~s~d----~~i~~w~~~~~~---~~~~~~~~~h-~~~v~~l~~sp~g~~l~s~s~D~- 216 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQELLASASYD----DTVKLYREEEDD---WVCCATLEGH-ESTVWSLAFDPSGQRLASCSDDR- 216 (345)
T ss_dssp ECCCCSCEEEEEECSSSSCEEEEETT----SCEEEEEEETTE---EEEEEEECCC-SSCEEEEEECTTSSEEEEEETTS-
T ss_pred ecCcCCCeEEEEECCCCCEEEEEeCC----CcEEEEEecCCC---EEEEEEecCC-CCceEEEEECCCCCEEEEEeCCC-
Confidence 21222222333 99999877765543 347777776543 22 112222 34455666655566777777664
Q ss_pred eeEEEEECCCCc---------------eeeeeCC-CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 376 SVMDLHDLNTGK---------------RLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 376 ~~l~~~dl~~g~---------------~~~~l~~-~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|.+|++..+. .+..+.. ....+..+.+++++..++... .. ..+..++.
T Consensus 217 -~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d---~~i~vw~~ 281 (345)
T 3fm0_A 217 -TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC-GD---DAIRVFQE 281 (345)
T ss_dssp -CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE-TT---SCEEEEEE
T ss_pred -eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe-CC---CeEEEEEe
Confidence 56677642111 1112222 234566777788776555433 22 24555655
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-08 Score=105.69 Aligned_cols=237 Identities=14% Similarity=0.077 Sum_probs=140.2
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..++|||||++|+-... ...|++||+.+++.+.... ....+..++|+|||+.|+-...+.
T Consensus 76 ~~~V~~~~~~~~~~~l~s~s~-----D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~---------- 140 (343)
T 2xzm_R 76 NHFVSDLALSQENCFAISSSW-----DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER---------- 140 (343)
T ss_dssp SSCEEEEEECSSTTEEEEEET-----TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTS----------
T ss_pred CCceEEEEECCCCCEEEEEcC-----CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCC----------
Confidence 345788999999998874432 2479999999988643222 222346899999999887665432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEe-cCCCCeeEEEEEEecCC----------cEEEEEEecCCCCceEEEEeCCCCCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVE-FPNGRSLGLHSEVTDCG----------RYLLVSTSNNTQGSDLHYFDLHSLPDG 288 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~SpDG----------~~l~~~~~~~~~~~~i~~~d~~~~~~~ 288 (734)
.|.+|++.... ..... ...+...+..+.|+|++ .+|+... ....|.+||...
T Consensus 141 ------~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~---- 203 (343)
T 2xzm_R 141 ------EIKLWNILGEC---KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG----WDGRLKVWNTNF---- 203 (343)
T ss_dssp ------CEEEEESSSCE---EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE----TTSEEEEEETTT----
T ss_pred ------EEEEEeccCCc---eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc----CCCEEEEEcCCC----
Confidence 58888875321 11111 11233456788999998 4555322 226789999543
Q ss_pred cccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 289 KISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 289 ~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
.....+.......... |+|||+.|+..+. +..|..||+..... ....+... ..+..+.+..++.++
T Consensus 204 -----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~----dg~v~iwd~~~~~~--~~~~~~~~--~~v~~v~~sp~~~~l 270 (343)
T 2xzm_R 204 -----QIRYTFKAHESNVNHLSISPNGKYIATGGK----DKKLLIWDILNLTY--PQREFDAG--STINQIAFNPKLQWV 270 (343)
T ss_dssp -----EEEEEEECCSSCEEEEEECTTSSEEEEEET----TCEEEEEESSCCSS--CSEEEECS--SCEEEEEECSSSCEE
T ss_pred -----ceeEEEcCccccceEEEECCCCCEEEEEcC----CCeEEEEECCCCcc--cceeecCC--CcEEEEEECCCCCEE
Confidence 1111222222233333 9999998775543 35699999843321 12222222 235556555545555
Q ss_pred EEEEeCCceeEEEEECCCCceee--eeC-----------CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VHYIQNVRSVMDLHDLNTGKRLH--SFP-----------LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~~g~~~~--~l~-----------~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+... + ..+.+|++.+++... .+. .....+..++++|+++.++..... ..+..|++
T Consensus 271 a~~~-d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D----g~v~~w~~ 338 (343)
T 2xzm_R 271 AVGT-D--QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD----GVIRTFSF 338 (343)
T ss_dssp EEEE-S--SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT----SEEEEEEE
T ss_pred EEEC-C--CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC----ceEEEEEE
Confidence 5443 3 258999997665433 332 123456788889998766544322 36777777
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.5e-10 Score=111.28 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC-----ceeEEEEcCCcchhccccccccCcccccccCC
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE-----LYGAALILVGALDMLRFNKFTIAYYSESEFGS 623 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~ 623 (734)
.+|+.++++.|.++. .-+++.++|||+||.+++.++.++|+ .++++|+.++..+....... ...+ ...+.
T Consensus 77 a~~l~~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~--~~~~-~~~~~ 151 (254)
T 3ds8_A 77 SKWLKIAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDN--GMDL-SFKKL 151 (254)
T ss_dssp HHHHHHHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHH--CSCT-TCSSC
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccc--cccc-ccccC
Confidence 345555567776652 23689999999999999999999998 78999988876654322110 0001 11133
Q ss_pred CCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecC------CCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC
Q psy4818 624 PNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGD------HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697 (734)
Q Consensus 624 ~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~------~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 697 (734)
|.....+..+.... ..+. .+.| +|+++|. +|..||+..+..+...++.. ...+....+.
T Consensus 152 p~~~~~~~~~~~~~--~~~~-----~~~~-vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~-------~~~~~~~~~~ 216 (254)
T 3ds8_A 152 PNSTPQMDYFIKNQ--TEVS-----PDLE-VLAIAGELSEDNPTDGIVPTISSLATRLFMPGS-------AKAYIEDIQV 216 (254)
T ss_dssp SSCCHHHHHHHHTG--GGSC-----TTCE-EEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTT-------BSEEEEEEEE
T ss_pred CcchHHHHHHHHHH--hhCC-----CCcE-EEEEEecCCCCCCCCcEeeHHHHHHHHHHhhcc-------CcceEEEEEe
Confidence 33223333332111 1111 1233 9999999 99999999887777666543 3345555555
Q ss_pred C--CCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 698 D--AGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 698 ~--~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+ ++|...... -+....+..||.+..
T Consensus 217 g~~a~Hs~l~~~---~~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 217 GEDAVHQTLHET---PKSIEKTYWFLEKFK 243 (254)
T ss_dssp SGGGCGGGGGGS---HHHHHHHHHHHHTCC
T ss_pred CCCCchhcccCC---HHHHHHHHHHHHHhc
Confidence 5 678765432 246666788887754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-08 Score=103.63 Aligned_cols=244 Identities=11% Similarity=0.082 Sum_probs=142.5
Q ss_pred cEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc---cccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 141 TTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN---VKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 141 ~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~---~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
...+..+.||| |+++|+... .+ ..|++||+.++......... ..+..++|+||++.|+....+
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 184 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSS-IR----GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-------- 184 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEE-TT----TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT--------
T ss_pred CCceeEEEeCCCCCCEEEEEe-CC----CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC--------
Confidence 35588999999 667666543 23 36999999875432221111 224689999999988776543
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
..|+++++.. +.+..+. .+...+..+.|+|+|++++++... ...|.+||+.++... ...
T Consensus 185 --------~~i~i~d~~~---~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~-----~~~ 243 (383)
T 3ei3_B 185 --------GRLLLLGLDG---HEIFKEK--LHKAKVTHAEFNPRCDWLMATSSV---DATVKLWDLRNIKDK-----NSY 243 (383)
T ss_dssp --------SEEEEEETTS---CEEEEEE--CSSSCEEEEEECSSCTTEEEEEET---TSEEEEEEGGGCCST-----TCE
T ss_pred --------CCEEEEECCC---CEEEEec--cCCCcEEEEEECCCCCCEEEEEeC---CCEEEEEeCCCCCcc-----cce
Confidence 2789999842 2222232 233467789999999954444432 257999999863210 112
Q ss_pred eeeeccccceEEE-EEe-cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC-----CceeEEEEEeeCCEEEEE
Q psy4818 297 KTVIPGMDHHHEI-IAN-NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE-----NRTLDVVAAVANNKLIVH 369 (734)
Q Consensus 297 ~~l~~~~~~~~~~-~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~ 369 (734)
............. |+| +|+.|+..+. +..|.++|+.+... ...+..+.. ...+.....+++..+.+.
T Consensus 244 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 244 IAEMPHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317 (383)
T ss_dssp EEEEECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEE
T ss_pred EEEecCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCCCcc--ccccccccccccccccceEEeccCCCCceEEE
Confidence 2222333333333 899 9888776554 34699999976542 222322210 111111111222222222
Q ss_pred EEe------CCceeEEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 370 YIQ------NVRSVMDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 370 ~~~------~~~~~l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
... .....|++||+.+++.+..+..+ .+.+..+.+++++..++.. + . ..+.+||+
T Consensus 318 ~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s-d---~~i~iw~~ 380 (383)
T 3ei3_B 318 RYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-M-G---FNILIWNR 380 (383)
T ss_dssp CBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-E-T---TEEEEEEC
T ss_pred ecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe-c-C---CcEEEEec
Confidence 221 12357999999999988888753 3445455788888755443 3 2 57899988
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-08 Score=100.63 Aligned_cols=253 Identities=10% Similarity=0.090 Sum_probs=143.2
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc----cc-cccccccCeeEEEc--CCcEEEEEEEecCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY----PE-VLKNVKFPSISWTH--DHKGFFYNQYCDING 212 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~----~~-~~~~~~~~~~~wSp--Dg~~l~y~~~~~~~~ 212 (734)
+...+..++|||||++||.... . ..|++||+.++... .. ......+..++|+| |++.|+....+.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg--- 81 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSS-D----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK--- 81 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEET-T----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS---
T ss_pred cccceeEEEEcCCCCEEEEeeC-C----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC---
Confidence 4455889999999999987653 2 37999999876421 11 11222346889999 688887766432
Q ss_pred CCCCCcccccCCcEEEEEECCCCCCCC-----eeEEecCCCCeeEEEEEEecC--CcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 213 TADGTETTAHMGQKIYYHVLGTEQDKD-----IPVVEFPNGRSLGLHSEVTDC--GRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~l~t~~~~~-----~~v~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
.|.+|++.++.... ..+.....+...+..+.|+|+ |++|+.... ...|++||+.++
T Consensus 82 -------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~ 144 (351)
T 3f3f_A 82 -------------TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN----DGILRLYDALEP 144 (351)
T ss_dssp -------------CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TCEEEEEECSST
T ss_pred -------------eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC----CCcEEEecCCCh
Confidence 57888887654321 223332233446778999999 998886432 258999999873
Q ss_pred CCCc-ccCCCCcee--ee--ccccceEEE-EEec---CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeE
Q psy4818 286 PDGK-ISGKFPLKT--VI--PGMDHHHEI-IANN---GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLD 356 (734)
Q Consensus 286 ~~~~-l~~~~~~~~--l~--~~~~~~~~~-~s~d---g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 356 (734)
.... +........ +. ......... |+|+ ++.++..+.. ..+..++...+... ....+... ...+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~~~~-~~~~~~~h-~~~i~ 218 (351)
T 3f3f_A 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE----QAIIYQRGKDGKLH-VAAKLPGH-KSLIR 218 (351)
T ss_dssp TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT----EEEEEEECTTSCEE-EEEECCCC-CSCEE
T ss_pred HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC----CcEEEEccCCCcee-eeeecCCC-Cccee
Confidence 2111 000000000 00 111122222 7886 6666654443 33544444443310 01112222 34455
Q ss_pred EEEEeeCC----EEEEEEEeCCceeEEEEECCCC----------------------------------------------
Q psy4818 357 VVAAVANN----KLIVHYIQNVRSVMDLHDLNTG---------------------------------------------- 386 (734)
Q Consensus 357 ~~~~~~~~----~l~~~~~~~~~~~l~~~dl~~g---------------------------------------------- 386 (734)
.+.+..++ .++++...++ .|++||+.++
T Consensus 219 ~~~~~p~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (351)
T 3f3f_A 219 SISWAPSIGRWYQLIATGCKDG--RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV 296 (351)
T ss_dssp EEEECCCSSCSSEEEEEEETTS--CEEEEEEEECC---------------------------------------CCSEEE
T ss_pred EEEECCCCCCcceEEEEEcCCC--eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence 66665544 6777777664 6778887544
Q ss_pred ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 387 KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 387 ~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+..+....+.|..+.++++++.++ +.+.. ..+..||+
T Consensus 297 ~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d---g~v~iw~~ 335 (351)
T 3f3f_A 297 ELLSEHDDHNGEVWSVSWNLTGTILS-SAGDD---GKVRLWKA 335 (351)
T ss_dssp EEEEEECTTSSCEEEEEECSSSCCEE-EEETT---SCEEEEEE
T ss_pred cEEEEEecccccEEEEEEcCCCCEEE-EecCC---CcEEEEec
Confidence 23334444456677888888876554 33332 36888888
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=115.82 Aligned_cols=243 Identities=9% Similarity=-0.030 Sum_probs=137.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC--Cccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG--KDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g--~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
+..++|||||++||... ....|++||+.++ +.+... .....+..++|+|||+.|+....+.
T Consensus 14 v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~----------- 77 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR----------- 77 (377)
T ss_dssp CSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS-----------
T ss_pred EEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC-----------
Confidence 67889999999998543 2346999999887 433222 1222346899999999888776432
Q ss_pred ccCCcEEEEEECCCCC-CCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 221 AHMGQKIYYHVLGTEQ-DKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|++|++.++. ... +.....+...+..+.|+|||++|+.... ...|.+||+.++..-. ....+
T Consensus 78 -----~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~-----~~~~~ 141 (377)
T 3dwl_C 78 -----NAYVYEKRPDGTWKQ--TLVLLRLNRAATFVRWSPNEDKFAVGSG----ARVISVCYFEQENDWW-----VSKHL 141 (377)
T ss_dssp -----SEEEC------CCCC--EEECCCCSSCEEEEECCTTSSCCEEEES----SSCEEECCC-----CC-----CCEEE
T ss_pred -----eEEEEEcCCCCceee--eeEecccCCceEEEEECCCCCEEEEEec----CCeEEEEEECCcccce-----eeeEe
Confidence 58888887654 111 2222223345678999999999886443 2578999998732100 11222
Q ss_pred ec-cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC------------CceEeecC-CCCceeEEEEEeeCC
Q psy4818 300 IP-GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK------------NWKTLIPE-DENRTLDVVAAVANN 364 (734)
Q Consensus 300 ~~-~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~-~~~~~~~~~~~~~~~ 364 (734)
.. ........ |+|+++.|+..+.. ..|..+|+...... ....++.. .....+..+.+..++
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAAGCAD----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG 217 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEEEESS----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTS
T ss_pred ecccCCCeEEEEEcCCCCEEEEEeCC----CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCC
Confidence 22 22233333 89999877765543 34777887532100 00111111 112334555555546
Q ss_pred EEEEEEEeCCceeEEEEECCCCce----eeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNTGKR----LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~g~~----~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++++...+ ..|++||+.+++. +..+....+.+..+.+++++..+ ++.+. ..+.+++.
T Consensus 218 ~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~----~~~~~~~~ 279 (377)
T 3dwl_C 218 NALAYAGHD--SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIV-AAGYN----YSPILLQG 279 (377)
T ss_dssp SCEEEEETT--TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEE-EEESS----SSEEEECC
T ss_pred CEEEEEeCC--CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEE-EEEcC----CcEEEEEe
Confidence 666666655 4788999988875 45555555667788888887544 33322 23556666
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-08 Score=103.26 Aligned_cols=259 Identities=9% Similarity=-0.046 Sum_probs=127.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC-CCCcccccc--cccccCeeEEEcCCcEE-EEEEEecCCCCCCCCcc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD-TGKDYPEVL--KNVKFPSISWTHDHKGF-FYNQYCDINGTADGTET 219 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~-~g~~~~~~~--~~~~~~~~~wSpDg~~l-~y~~~~~~~~~~~~~~~ 219 (734)
...++|||||++|+.+.. . .|.+||+. +|+.+.... .......++|||||+.| +|+.... ...
T Consensus 42 ~~~~a~spdg~~l~~~~~-~-----~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~-------~~~ 108 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAM-K-----KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQP-------PYA 108 (365)
T ss_dssp CSEEEECTTSSEEEEEEB-T-----EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSST-------TCC
T ss_pred CcEEEECCCCCEEEEEcc-c-----eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCC-------cce
Confidence 457899999998864432 2 68889887 776432211 10113468999999974 4443200 000
Q ss_pred c-cc----CCcEEEEEECCC-CCCCC-eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC-CCCCCccc
Q psy4818 220 T-AH----MGQKIYYHVLGT-EQDKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH-SLPDGKIS 291 (734)
Q Consensus 220 ~-~~----~~~~l~~~~l~t-~~~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~-~~~~~~l~ 291 (734)
. .+ ....+.++++.. +.... +.++... ......++.|||||++|++.. . ....|++++++ ++. ++
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~-~--~~~~v~~~~~~~~g~---~~ 181 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ-ENTGIHGMVFDPTETYLYSAD-L--TANKLWTHRKLASGE---VE 181 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC-TTCCEEEEEECTTSSEEEEEE-T--TTTEEEEEEECTTSC---EE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeC-CCCcceEEEECCCCCEEEEEc-C--CCCEEEEEEECCCCC---EE
Confidence 0 00 123566666653 21111 1111111 122456789999999987543 2 22589999987 521 10
Q ss_pred CCCCceeee--c-cccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCC-ceE--eecCC-CC-c-------eeE
Q psy4818 292 GKFPLKTVI--P-GMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKN-WKT--LIPED-EN-R-------TLD 356 (734)
Q Consensus 292 ~~~~~~~l~--~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~--l~~~~-~~-~-------~~~ 356 (734)
....+. . +.......|+|||+.+|+....+ ..-.++.++.+++.... ... .++.. .. . ...
T Consensus 182 ---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 182 ---LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG-NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp ---EEEEEECSSTTCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred ---EeeeEecCCCCCCCCEeEECCCCCEEEEEECCC-CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence 011111 0 11112224999999888765432 22234444543443100 011 12221 01 1 234
Q ss_pred EEE-EeeCC-EEEEEEEeCC---ceeEEEEECC-CCceee---eeCCCCceEEeeccCc---ccceEEEEEecCCCCceE
Q psy4818 357 VVA-AVANN-KLIVHYIQNV---RSVMDLHDLN-TGKRLH---SFPLDLGQITHISGRR---KYNEVFYGFTSFLQPGTI 424 (734)
Q Consensus 357 ~~~-~~~~~-~l~~~~~~~~---~~~l~~~dl~-~g~~~~---~l~~~~g~v~~~~~~~---d~~~l~~~~ss~~~P~~~ 424 (734)
.+. +..++ .+++...... ...|.+|++. +|+..+ .+.........+.++| |++.+++..... ..+
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~---~~v 334 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE---GWL 334 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS---CEE
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC---CeE
Confidence 454 54434 5554433222 1278888874 576432 1221211223556677 677776553321 356
Q ss_pred EEEeC
Q psy4818 425 YHCNI 429 (734)
Q Consensus 425 ~~~d~ 429 (734)
.++++
T Consensus 335 ~v~~~ 339 (365)
T 1jof_A 335 EIYRW 339 (365)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66666
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-08 Score=103.27 Aligned_cols=223 Identities=9% Similarity=0.018 Sum_probs=137.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-------ccccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-------EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-------~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
+...+|||||++||... ....+.+|++..+.... ............|+||++.|+....+.
T Consensus 109 v~~~~~sp~g~~lasg~-----~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~------- 176 (354)
T 2pbi_B 109 VMACAYAPSGCAIACGG-----LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG------- 176 (354)
T ss_dssp CCEEEECTTSSEEEEES-----TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS-------
T ss_pred EEEEEECCCCCEEEEee-----CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC-------
Confidence 56789999999988543 22468888886542110 001111235789999999888766432
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec--CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD--CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
.|.+|++.++.. +..+.. +...+..+.++| +|++|+... ....|.+||+.++.
T Consensus 177 ---------~v~lwd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~g~~l~sgs----~Dg~v~~wd~~~~~-------- 231 (354)
T 2pbi_B 177 ---------TCALWDVESGQL--LQSFHG--HGADVLCLDLAPSETGNTFVSGG----CDKKAMVWDMRSGQ-------- 231 (354)
T ss_dssp ---------EEEEEETTTCCE--EEEEEC--CSSCEEEEEECCCSSCCEEEEEE----TTSCEEEEETTTCC--------
T ss_pred ---------cEEEEeCCCCeE--EEEEcC--CCCCeEEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCc--------
Confidence 789999987642 223332 222345567766 577776432 22579999998731
Q ss_pred CceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-CCceeEEEEEeeCCEEEEEEEe
Q psy4818 295 PLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 295 ~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
....+.......... |+|+|+.|+..+. +..|..||+.+.. ...+.... ....+..+.+..++.++++...
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLRADR---EVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE---EEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc---EEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence 122222222223333 8999987775554 2458889987653 12222222 1123344555544666666665
Q ss_pred CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEE
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVF 412 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~ 412 (734)
+ ..+++||+.+|+.+..+....+.|..+.++|++..++
T Consensus 305 d--~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 305 D--YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp T--SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred C--CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence 5 4799999988887777776677788899999987554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-08 Score=100.59 Aligned_cols=235 Identities=10% Similarity=0.088 Sum_probs=140.6
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+....|||||++|+-... ...|++||+.+|+.+.... ....+..+.|+||++.|+-...+.
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s~-----D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~---------- 129 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSASW-----DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK---------- 129 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTS----------
T ss_pred cccEEEEEECCCCCEEEEEeC-----CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCC----------
Confidence 345788999999999885543 2479999999998654322 222346789999999887666433
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCc------EEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR------YLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~------~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.+|++... .+.....+...+..+.++|+++ .|+ +.. ....|.+||+.++.
T Consensus 130 ------~i~vwd~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~-s~~---~d~~i~~wd~~~~~------- 187 (319)
T 3frx_A 130 ------TIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTII-SAG---NDKMVKAWNLNQFQ------- 187 (319)
T ss_dssp ------CEEEEETTSC-----EEEEECCCSSCEEEEEECCC------CCEEE-EEE---TTSCEEEEETTTTE-------
T ss_pred ------eEEEEECCCC-----eEEEEeccCCcEEEEEEccCCCCCCCccEEE-EEe---CCCEEEEEECCcch-------
Confidence 5788887532 1222222344566788888543 444 332 22579999998721
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
....+.......... |+|+|+.|+..+. +..|.+||+.++. ....+... ..+..+.+..++.+++....
T Consensus 188 -~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~~---~~~~~~~~--~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 188 -IEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAKK---AMYTLSAQ--DEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp -EEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTE---EEEEEECC--SCEEEEEECSSSSEEEEEET
T ss_pred -hheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCc---EEEEecCC--CcEEEEEEcCCCCEEEEEcC
Confidence 112222222333333 8999987775443 3569999998764 12222222 23445555554555555544
Q ss_pred CCceeEEEEECCCCceeeeeCCC--------CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLD--------LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~--------~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ .+.+|++..+.....+... ...+.++.++||++.++.. +.. ..+.+||+
T Consensus 258 ~---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg-~~D---g~i~vWd~ 315 (319)
T 3frx_A 258 T---GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG-YTD---NVIRVWQV 315 (319)
T ss_dssp T---EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE-ETT---SCEEEEEE
T ss_pred C---CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe-ecC---ceEEEEEE
Confidence 3 4778888655544444321 2345678889998766543 332 35788887
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=7.6e-11 Score=130.39 Aligned_cols=131 Identities=20% Similarity=0.171 Sum_probs=88.8
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC---CccccHHHHHHHHhcCeEEEEEecccC-CCCCchhhhccc
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV---LPTFSISRCMFLRHFNGIYAIPNIRGG-GELGEDWHNAGR 541 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~---~~~~~~~~~~~l~~~G~~v~~~~~rG~-~~~g~~~~~~~~ 541 (734)
+.|. +.+.++.|+.. ..++.|+||++|||..... ...+.. ..+..+.|++|+.+|||.+ -||+..... .
T Consensus 93 ~edc--l~l~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~--~~la~~~g~vvv~~nYRlg~~Gf~~~~~~--~ 165 (543)
T 2ha2_A 93 SEDC--LYLNVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDG--RFLAQVEGAVLVSMNYRVGTFGFLALPGS--R 165 (543)
T ss_dssp ESCC--CEEEEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCT--HHHHHHHCCEEEEECCCCHHHHHCCCTTC--S
T ss_pred CCcC--CeEEEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCCh--HHHHhcCCEEEEEecccccccccccCCCC--C
Confidence 4555 45566778652 3456899999999853322 223333 2333446999999999953 223211100 0
Q ss_pred cccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGAL 603 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~ 603 (734)
...+...+.|++++++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 166 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 166 EAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 1122335889999999998762 26999999999999999999887653 46899999999854
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-10 Score=117.56 Aligned_cols=209 Identities=12% Similarity=-0.066 Sum_probs=117.3
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHH-HHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAE-YMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~ 563 (734)
.+..|.||++||..+......|.. +...|. .+|.|+.+|+||.|... .....++++...+. .+.+.
T Consensus 64 ~~~~~~lvllhG~~~~~~~~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~----------~~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 64 GPGEVTVICCAGTAAISGPHEFTR-LAGALR-GIAPVRAVPQPGYEEGE----------PLPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CSCSSEEEECCCSSTTCSTTTTHH-HHHHTS-SSCCBCCCCCTTSSTTC----------CBCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEECCCcccCcHHHHHH-HHHhcC-CCceEEEecCCCCCCCC----------CCCCCHHHHHHHHHHHHHHh-
Confidence 456789999999866542234443 345565 48999999999955421 11235666655433 44443
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCC---CceeEEEEcCCcchhcc-ccc---cccCcccccccCCCCCHHHHH---H-
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRP---ELYGAALILVGALDMLR-FNK---FTIAYYSESEFGSPNNKTHFH---N- 632 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~~~a~v~~~~~~d~~~-~~~---~~~~~~~~~~~g~~~~~~~~~---~- 632 (734)
.+.+++.++|+|+||.+++.++.++| +.++++|+..+...... ... ......+......+....... .
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTALGAY 209 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHHHHHHHH
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHHHHHHHH
Confidence 33467999999999999999999987 47899998877543211 000 000000000000011111111 1
Q ss_pred HHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC-chHHhH
Q psy4818 633 LLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT-PLMKSI 711 (734)
Q Consensus 633 ~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~ 711 (734)
+.....+ .... +++| +|+++| .|+.+++.+ .. +.+. ....++++++++ ||...- ... .
T Consensus 210 ~~~~~~~-~~~~----i~~P-~lii~G-~d~~~~~~~-~~----~~~~------~~~~~~~~~i~g-gH~~~~~e~~--~ 268 (300)
T 1kez_A 210 DRLTGQW-RPRE----TGLP-TLLVSA-GEPMGPWPD-DS----WKPT------WPFEHDTVAVPG-DHFTMVQEHA--D 268 (300)
T ss_dssp HHHTTTC-CCCC----CSCC-BEEEEE-SSCSSCCCS-SC----CSCC------CSSCCEEEEESS-CTTTSSSSCS--H
T ss_pred HHHHhcC-CCCC----CCCC-EEEEEe-CCCCCCCcc-cc----hhhh------cCCCCeEEEecC-CChhhccccH--H
Confidence 1111111 1122 7777 999999 577777765 11 2211 123467888999 998753 322 3
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy4818 712 EEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 712 ~~~~~~~~fl~~~l~~~ 728 (734)
+....+.+||.+.....
T Consensus 269 ~~~~~i~~fl~~~~~~~ 285 (300)
T 1kez_A 269 AIARHIDAWLGGGNSSS 285 (300)
T ss_dssp HHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHhccCCC
Confidence 55666788887655433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-07 Score=97.35 Aligned_cols=288 Identities=11% Similarity=0.066 Sum_probs=150.5
Q ss_pred CcEEeCCeEEEEEEc-CCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC-----CCCceE
Q psy4818 95 APQRQENNYFYFHNK-GLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK-----SGSDWN 168 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~-----~g~~~~ 168 (734)
.|.++|.++| ..+. +......+++.+...+....-+. . +.. - ++.+||||++|+++... .|....
T Consensus 27 ~~~~~~~~~y-v~~~~~~~~~~~v~v~D~~t~~~~~~i~-----~-g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSY-INLPAHHSAIIQQWVLDAGSGSILGHVN-----G-GFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEE-EeCCcccCCccEEEEEECCCCeEEEEec-----C-CCC-C-CeEECCCCCEEEEEeccccccccCCCCC
Confidence 4446775544 4443 22111156666654443221111 1 111 2 89999999998887532 122235
Q ss_pred EEEEEECCCCCccccc-cc-------ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCe
Q psy4818 169 TLHIKDVDTGKDYPEV-LK-------NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDI 240 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~-~~-------~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~ 240 (734)
.|.++|+++++.+... .. ......+.|||||++||+..... ...|.+++ .+...
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~--------------~~~v~viD-~t~~~--- 159 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA--------------GPAVGLVV-QGGSS--- 159 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC--------------CCeEEEEE-CCCCE---
Confidence 7899999987754321 11 11235789999999998875321 23688888 66532
Q ss_pred eEEe-cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce--EEEEEecCCeE
Q psy4818 241 PVVE-FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH--HEIIANNGPEL 317 (734)
Q Consensus 241 ~v~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~s~dg~~l 317 (734)
+.. .+- +. .+.+.|+|+..++.... ...+.++++ ++...... .......+.... ...++++++.+
T Consensus 160 -~~~~i~~-~~---~~~~~~~~~~~~~~~~~---dg~~~~vd~-~g~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~ 227 (373)
T 2mad_H 160 -DDQLLSS-PT---CYHIHPGAPSTFYLLCA---QGGLAKTDH-AGGAAGAG---LVGAMLTAAQNLLTQPAQANKSGRI 227 (373)
T ss_pred -EeEEcCC-Cc---eEEEEeCCCceEEEEcC---CCCEEEEEC-CCcEEEEE---eccccccCCcceeecceeEecCCEE
Confidence 222 111 11 13455666655443321 134556666 42110000 000000111111 12367788888
Q ss_pred EEEeCCCCCCceEEEEecCCCCCCCceE--eecCC-------CCceeEEEEE-eeCCEEEEEEEeC-------CceeEEE
Q psy4818 318 IVKTTKNAPKGKVVTINLNNPCEKNWKT--LIPED-------ENRTLDVVAA-VANNKLIVHYIQN-------VRSVMDL 380 (734)
Q Consensus 318 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~-------~~~~~~~~~~-~~~~~l~~~~~~~-------~~~~l~~ 380 (734)
+|.+.. ..++.+|+.+........ +.... +.. ...+.+ .+++++|+..... ....|.+
T Consensus 228 ~~~~~~----~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 228 VWPVYS----GKILQADISAAGATNKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred EEEcCC----ceEEEEeccCCcceEeeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 887642 369999987543110011 00000 000 111222 3446677655421 2357999
Q ss_pred EECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+|+++++.++.|..+. ...++.+++|++.+++..+.. -..+.++|+
T Consensus 303 ID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~ 348 (373)
T 2mad_H 303 VTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAG--TEVLHIYDA 348 (373)
T ss_pred EECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCC--CCeEEEEEC
Confidence 9999999888886543 244777889998555554422 257999999
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-08 Score=108.10 Aligned_cols=245 Identities=9% Similarity=0.037 Sum_probs=146.2
Q ss_pred EEEeeEEeCCC----C---cEEEEEEeCCCCceEEEEEEECCCCCc-----ccccc-c-----ccccCeeEEE----cCC
Q psy4818 142 TALKLYAFSDN----G---KHFAYCLSKSGSDWNTLHIKDVDTGKD-----YPEVL-K-----NVKFPSISWT----HDH 199 (734)
Q Consensus 142 ~~~~~~~~SPD----G---~~la~~~~~~g~~~~~l~v~dl~~g~~-----~~~~~-~-----~~~~~~~~wS----pDg 199 (734)
..+..+.|+|| | ++|+.... . ..|++||+.+++. +.... . ...+..+.|+ ||+
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSF-S----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEET-T----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred CcEEEEEEecccccCCccccEEEEEcC-C----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 34788999999 9 88876553 2 3599999988874 32221 1 1334689999 999
Q ss_pred cE-EEEEEEecCCCCCCCCcccccCCcEEEEEECCC------CCCCC---eeEEec-----CCCCeeEEEEEEecCCcEE
Q psy4818 200 KG-FFYNQYCDINGTADGTETTAHMGQKIYYHVLGT------EQDKD---IPVVEF-----PNGRSLGLHSEVTDCGRYL 264 (734)
Q Consensus 200 ~~-l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t------~~~~~---~~v~~~-----~~~~~~~~~~~~SpDG~~l 264 (734)
+. |+....+. .|++|++.+ ..... ...+.. ..+......+.|+||| .|
T Consensus 138 ~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 200 (397)
T 1sq9_A 138 SHRLVATDVKG----------------TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 200 (397)
T ss_dssp CEEEEEEETTS----------------CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred ceEEEEEeCCC----------------cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence 98 66655322 577777766 32211 002211 1122345678999999 65
Q ss_pred EEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec---c---ccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 265 LVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP---G---MDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 265 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~---~---~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
+... ....|++||+.++ .....+.. . ....... |+|+++.|+..+.. +....|..+|+.+
T Consensus 201 ~~~~----~dg~i~i~d~~~~--------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d-~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 201 ATGF----NNGTVQISELSTL--------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-NSFGCITLYETEF 267 (397)
T ss_dssp EEEC----TTSEEEEEETTTT--------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-TTEEEEEEEETTT
T ss_pred EEEe----CCCcEEEEECCCC--------ceeEEEeccccccccCCccceEEECCCCCEEEEEecC-CCCceEEEEECCC
Confidence 5422 2368999999872 11222222 1 2223333 89999877765542 1125799999977
Q ss_pred CCCCCceEeecCC------------CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC------CC----
Q psy4818 338 PCEKNWKTLIPED------------ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP------LD---- 395 (734)
Q Consensus 338 ~~~~~~~~l~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~------~~---- 395 (734)
+. ....+... ....+..+.+..++.++++...+ ..|++||+.+++.+..+. ..
T Consensus 268 ~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 268 GE---RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--GKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp CC---EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT--SEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred Cc---ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC--CeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 54 22223220 13345555565445666666555 479999998888777776 33
Q ss_pred -----------CceEEeeccCcccc---------eEEEEEecCCCCceEEEEeC
Q psy4818 396 -----------LGQITHISGRRKYN---------EVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 396 -----------~g~v~~~~~~~d~~---------~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+..+.+++++. .++++.+.. ..+..||+
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d---g~i~iw~~ 393 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD---RSIRWFRE 393 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT---TEEEEEEE
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCC---CcEEEEEc
Confidence 55677888888873 455554443 46888887
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-07 Score=99.49 Aligned_cols=323 Identities=14% Similarity=0.077 Sum_probs=172.0
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC-
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD- 176 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~- 176 (734)
.|.+.++|+.+... ..+++.+..++...--+... .....+.+||||+++..+ +.. ..|.++|+.
T Consensus 163 ~d~~~~~~V~~~~~---~~V~viD~~t~~v~~~i~~g-------~~p~~v~~SpDGr~lyv~-~~d----g~V~viD~~~ 227 (567)
T 1qks_A 163 WDLENLFSVTLRDA---GQIALIDGSTYEIKTVLDTG-------YAVHISRLSASGRYLFVI-GRD----GKVNMIDLWM 227 (567)
T ss_dssp CCGGGEEEEEETTT---TEEEEEETTTCCEEEEEECS-------SCEEEEEECTTSCEEEEE-ETT----SEEEEEETTS
T ss_pred cCCCceEEEEeCCC---CeEEEEECCCCeEEEEEeCC-------CCccceEECCCCCEEEEE-cCC----CeEEEEECCC
Confidence 44444566665442 23555554443322112211 124478999999987654 333 369999996
Q ss_pred -CCCcccccccccccCeeEEE----cCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC----C
Q psy4818 177 -TGKDYPEVLKNVKFPSISWT----HDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP----N 247 (734)
Q Consensus 177 -~g~~~~~~~~~~~~~~~~wS----pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~----~ 247 (734)
+++.+.....+....++++| |||+++|...... .+|.+++..+.... ...... +
T Consensus 228 ~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~---------------~~v~ViD~~t~~~~--~~i~~~~~~~~ 290 (567)
T 1qks_A 228 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP---------------PQYVIMDGETLEPK--KIQSTRGMTYD 290 (567)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET---------------TEEEEEETTTCCEE--EEEECCEECTT
T ss_pred CCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccC---------------CeEEEEECCCCcEE--EEEeccccccc
Confidence 66654322222233578999 7999888776532 36777776654321 111110 0
Q ss_pred ------CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEe
Q psy4818 248 ------GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321 (734)
Q Consensus 248 ------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s 321 (734)
.+ ....+..|+++..+++.. .....|+++|..+.. .+ ....+-.+.......|++||+++++..
T Consensus 291 ~~~~~p~~-rva~i~~s~~~~~~vv~~---~~~g~v~~vd~~~~~--~~----~v~~i~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 291 EQEYHPEP-RVAAILASHYRPEFIVNV---KETGKILLVDYTDLN--NL----KTTEISAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp TCCEESCC-CEEEEEECSSSSEEEEEE---TTTTEEEEEETTCSS--EE----EEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred cccccCCC-ceEEEEEcCCCCEEEEEe---cCCCeEEEEecCCCc--cc----eeeeeeccccccCceECCCCCEEEEEe
Confidence 11 234677889988766654 233689999987621 10 011111111111113999999887765
Q ss_pred CCCCCCceEEEEecCCCCCCCceEeecC-C-CCceeEEEE-EeeCCEEEEEEEeCCceeEEEEECCC-------Cceeee
Q psy4818 322 TKNAPKGKVVTINLNNPCEKNWKTLIPE-D-ENRTLDVVA-AVANNKLIVHYIQNVRSVMDLHDLNT-------GKRLHS 391 (734)
Q Consensus 322 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~dl~~-------g~~~~~ 391 (734)
+. ..+|.++|+++++ ....++- . ..+.-.+.. ...+..-++....-+...|.++|..+ -+.++.
T Consensus 361 ~~---sn~V~ViD~~t~k---l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 361 NA---RNKLVVIDTKEGK---LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp GG---GTEEEEEETTTTE---EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred CC---CCeEEEEECCCCc---EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE
Confidence 53 3469999998765 3333332 1 111101221 23322334444444556799999876 345566
Q ss_pred eCCC-CceEEeeccCcccceEEEEEecCCCC-----ceEEEEeCCCCcCCCC-----CCceeEEeeccCCCCCCCCceEE
Q psy4818 392 FPLD-LGQITHISGRRKYNEVFYGFTSFLQP-----GTIYHCNIPENITDQD-----DFKPTIFRETIVPEFEPTLFQTK 460 (734)
Q Consensus 392 l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P-----~~~~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 460 (734)
+... .+.+ .+..+|+++.+++.. ...| ..+.++|+ ++. ....+.+.-.+..++....-.+.
T Consensus 435 i~~~g~g~~-~i~~~p~~~~l~v~~--~~~~~~~~~~~v~v~d~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (567)
T 1qks_A 435 FPALGGGSL-FIKTHPNSQYLYVDA--TLNPEAEISGSVAVFDI-----KAMTGDGSDPEFKTLPIAEWAGITEGQPRVV 506 (567)
T ss_dssp EECSCSCCC-CEECCTTCSEEEEEC--TTCSSHHHHTCEEEEEG-----GGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred EecCCCCCE-EEEeCCCCCeEEEec--CCCCCcccCceEEEEEC-----CcccccccCCCcEEeccccccccCCCCcceE
Confidence 6544 3333 355689998888754 2233 37899998 332 10112221111112222233567
Q ss_pred EEEEEcCCCcEEeEEEE
Q psy4818 461 QVYFRSKDGTRVPMYII 477 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~ 477 (734)
++.| +.||.++...+.
T Consensus 507 ~~~~-~~~G~~~~~s~~ 522 (567)
T 1qks_A 507 QGEF-NKDGTEVWFSVW 522 (567)
T ss_dssp EEEE-CTTSSEEEEEEE
T ss_pred eeeE-CCCCCEEEEEee
Confidence 7777 478887766644
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-08 Score=104.24 Aligned_cols=245 Identities=11% Similarity=0.023 Sum_probs=145.1
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC--Cccccc-ccccccCeeEEEcC--CcEEEEEEEecCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG--KDYPEV-LKNVKFPSISWTHD--HKGFFYNQYCDINGTAD 215 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g--~~~~~~-~~~~~~~~~~wSpD--g~~l~y~~~~~~~~~~~ 215 (734)
...+..++|||||++||.... + ..|++||+.++ +.+... .....+..+.|+|+ ++.|+....+.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------ 79 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSS-D----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------ 79 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEET-T----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS------
T ss_pred cccEEEEEEcCCCCEEEEEEC-C----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC------
Confidence 345889999999999987653 2 35889998743 332211 12223467899988 88777665432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC--CcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC--GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.+|++.++.... +.....+...+..+.|+|+ |++|+.... ...|.+||+.++..
T Consensus 80 ----------~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~------ 137 (379)
T 3jrp_A 80 ----------KVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVASS----DGKVSVVEFKENGT------ 137 (379)
T ss_dssp ----------CEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCSEEEEEET----TSEEEEEECCTTSC------
T ss_pred ----------EEEEEEcCCCceeE--eeeecCCCcceEEEEeCCCCCCCEEEEecC----CCcEEEEecCCCCc------
Confidence 57888877653212 2222223345678999999 888876542 25899999987311
Q ss_pred CCceeeeccccceEEE-EEe-------------cCCeEEEEeCCCCCCceEEEEecCCCCCC-CceEeecCCCCceeEEE
Q psy4818 294 FPLKTVIPGMDHHHEI-IAN-------------NGPELIVKTTKNAPKGKVVTINLNNPCEK-NWKTLIPEDENRTLDVV 358 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~-------------dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~ 358 (734)
.....+.......... |+| +++.|+..+.. ..|..+|+.++... .....+... ...+..+
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~ 212 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD----NLVKIWKYNSDAQTYVLESTLEGH-SDWVRDV 212 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT----SCEEEEEEETTTTEEEEEEEECCC-SSCEEEE
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC----CeEEEEEecCCCcceeeEEEEecc-cCcEeEE
Confidence 1111222222223333 777 57766655543 35888888654310 011122222 3445566
Q ss_pred EEeeC---CEEEEEEEeCCceeEEEEECCCCc---eeeeeCC--CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 359 AAVAN---NKLIVHYIQNVRSVMDLHDLNTGK---RLHSFPL--DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 359 ~~~~~---~~l~~~~~~~~~~~l~~~dl~~g~---~~~~l~~--~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..+ +.++++...++ .|.+||+.+++ ....+.. ..+.+..+.+++++..++....+ ..++.|++
T Consensus 213 ~~sp~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iw~~ 285 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD----NKVTLWKE 285 (379)
T ss_dssp EECCCCSSSEEEEEEETTS--CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS----SSEEEEEE
T ss_pred EECCCCCCCCeEEEEeCCC--EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC----CcEEEEeC
Confidence 66655 57777776664 68888887664 2222222 24567788899998766654432 35777777
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-07 Score=96.61 Aligned_cols=236 Identities=11% Similarity=0.078 Sum_probs=141.2
Q ss_pred CcEEEeeEEeCCCC-cEEEEEEeCCCCceEEEEEEECCCCCc-----ccccc-cccccCeeEEEcCCcEEEEEEEecCCC
Q psy4818 140 GTTALKLYAFSDNG-KHFAYCLSKSGSDWNTLHIKDVDTGKD-----YPEVL-KNVKFPSISWTHDHKGFFYNQYCDING 212 (734)
Q Consensus 140 ~~~~~~~~~~SPDG-~~la~~~~~~g~~~~~l~v~dl~~g~~-----~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~ 212 (734)
+...+..++|||++ ++|+ +.... .+|++||+.+... +.... ....+..++|+|||+.|+-...+.
T Consensus 16 H~~~V~~l~~~~~~~~~l~-s~s~D----~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~--- 87 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLL-SASRD----KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK--- 87 (319)
T ss_dssp CSSCEEEEEECSSCTTEEE-EEETT----SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred ccceEEEEEccCCCccEEE-EecCC----ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC---
Confidence 44457889999987 5555 43333 4799999865321 11111 111235789999999888766433
Q ss_pred CCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC
Q psy4818 213 TADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
.|.+|++.++.. +..+. .+...+..+.|+|+|++|+-.. ....|.+||+.+.
T Consensus 88 -------------~v~~wd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~l~s~s----~D~~i~vwd~~~~------- 139 (319)
T 3frx_A 88 -------------TLRLWDVATGET--YQRFV--GHKSDVMSVDIDKKASMIISGS----RDKTIKVWTIKGQ------- 139 (319)
T ss_dssp -------------EEEEEETTTTEE--EEEEE--CCSSCEEEEEECTTSCEEEEEE----TTSCEEEEETTSC-------
T ss_pred -------------EEEEEECCCCCe--eEEEc--cCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCC-------
Confidence 789999887642 22232 2333567899999999887432 2257899998761
Q ss_pred CCCceeeeccccceEEE-EEec------CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCE
Q psy4818 293 KFPLKTVIPGMDHHHEI-IANN------GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNK 365 (734)
Q Consensus 293 ~~~~~~l~~~~~~~~~~-~s~d------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 365 (734)
....+.......... ++|. +..++-.+. +..|..+|+.+.. ....+... ...+..+.+..++.
T Consensus 140 --~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~---~~~~~~~h-~~~v~~~~~sp~g~ 209 (319)
T 3frx_A 140 --CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVKAWNLNQFQ---IEADFIGH-NSNINTLTASPDGT 209 (319)
T ss_dssp --EEEEECCCSSCEEEEEECCC------CCEEEEEET----TSCEEEEETTTTE---EEEEECCC-CSCEEEEEECTTSS
T ss_pred --eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC----CCEEEEEECCcch---hheeecCC-CCcEEEEEEcCCCC
Confidence 122222222222222 4443 334443332 3458889987654 22222222 33455565655567
Q ss_pred EEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 366 LIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 366 l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++++...+ ..|++||+.+++.+..+... ..+..+.++|++..++.... ..+..+++
T Consensus 210 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-----~~i~v~~~ 265 (319)
T 3frx_A 210 LIASAGKD--GEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-----TGIKVFSL 265 (319)
T ss_dssp EEEEEETT--CEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEET-----TEEEEEEE
T ss_pred EEEEEeCC--CeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcC-----CCcEEEEe
Confidence 77777666 47999999888877776543 45678888999876654432 24667776
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-07 Score=92.86 Aligned_cols=266 Identities=10% Similarity=0.038 Sum_probs=154.3
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWT 196 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wS 196 (734)
+++-+...+....++... ++...+..++|||||++||-... ...|++||+++++.+....... .....++
T Consensus 47 V~iWd~~tg~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~-----Dg~v~iw~~~~~~~~~~~~~h~-~~~~~~~ 116 (318)
T 4ggc_A 47 VYLWSASSGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTS-----SAEVQLWDVQQQKRLRNMTSHS-ARVGSLS 116 (318)
T ss_dssp EEEEETTTCCEEEEEECC----STTCCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCS-SCEEEEE
T ss_pred EEEEECCCCCEEEEEEec----CCCCeEEEEEECCCCCEEEEEEC-----CCcEEEeecCCceeEEEecCcc-ceEEEee
Confidence 333344445544444322 22344889999999999986543 2479999999998654332222 2455778
Q ss_pred cCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCce
Q psy4818 197 HDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD 276 (734)
Q Consensus 197 pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 276 (734)
++++.|+....+. .+..+...+... .+..+. .+........++++|++|+.... ...
T Consensus 117 ~~~~~l~s~~~~~----------------~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~----d~~ 173 (318)
T 4ggc_A 117 WNSYILSSGSRSG----------------HIHHHDVRVAEH-HVATLS--GHSQEVCGLRWAPDGRHLASGGN----DNL 173 (318)
T ss_dssp EETTEEEEEETTS----------------EEEEEETTSSSC-EEEEEE--CCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred cCCCEEEEEecCC----------------ceEeeecCCCce-eEEEEc--CccCceEEEEEcCCCCEEEEEec----Ccc
Confidence 8888766554321 455566554432 122222 22335567899999999874332 257
Q ss_pred EEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCcee
Q psy4818 277 LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTL 355 (734)
Q Consensus 277 i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 355 (734)
|.+||+.++.... ............... .+++++..++..... .....|..++..... ........ ..+.
T Consensus 174 i~iwd~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~---~~~~~~~~-~~v~ 244 (318)
T 4ggc_A 174 VNVWPSAPGEGGW----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGA---CLSAVDAH-SQVC 244 (318)
T ss_dssp EEEEESSCBTTBS----CCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCC---EEEEEECS-SCEE
T ss_pred eeEEECCCCcccc----cceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEeccccc---ccccccce-eeee
Confidence 8999998742110 011111111112222 277777766654432 234568888887654 22222222 2333
Q ss_pred EEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 356 DVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.......++.+++.. ......|++||+.+++.+..+..+.+.|.++.++|+++.++ +.+.. ..+.+||+
T Consensus 245 ~~~~~~~~~~~~~~s-g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~-S~s~D---~~v~iWd~ 313 (318)
T 4ggc_A 245 SILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAAD---ETLRLWRC 313 (318)
T ss_dssp EEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETT---TEEEEECC
T ss_pred eeeecccccceEEEE-EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEecC---CeEEEEEC
Confidence 333334434554433 22335799999999998888887777888999999987554 44433 36888888
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-10 Score=110.50 Aligned_cols=101 Identities=11% Similarity=0.001 Sum_probs=66.3
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
.+..|.||++||+.+.... |.. +.. |. .||.|+.+|+||.+. + .....+++++.+.+..+++.-.
T Consensus 18 ~~~~~~lv~lhg~~~~~~~--~~~-~~~-l~-~~~~v~~~d~~G~~~-~---------~~~~~~~~~~~~~~~~~i~~~~ 82 (265)
T 3ils_A 18 MVARKTLFMLPDGGGSAFS--YAS-LPR-LK-SDTAVVGLNCPYARD-P---------ENMNCTHGAMIESFCNEIRRRQ 82 (265)
T ss_dssp TTSSEEEEEECCTTCCGGG--GTT-SCC-CS-SSEEEEEEECTTTTC-G---------GGCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHH--HHH-HHh-cC-CCCEEEEEECCCCCC-C---------CCCCCCHHHHHHHHHHHHHHhC
Confidence 3556889999998765543 332 234 54 599999999999421 1 1122345555544433333211
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh---cCCCceeEEEEcCC
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLN---QRPELYGAALILVG 601 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~---~~p~~~~a~v~~~~ 601 (734)
...++.++|||+||.++..++. .+|+.++.+|+..+
T Consensus 83 -~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~ 121 (265)
T 3ils_A 83 -PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDA 121 (265)
T ss_dssp -SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred -CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 2247999999999999999987 67888888887654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-07 Score=95.71 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=151.7
Q ss_pred cCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC-----CCCce
Q psy4818 93 YSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK-----SGSDW 167 (734)
Q Consensus 93 ~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~-----~g~~~ 167 (734)
...|.|+|.++|-.-.........+++.+.......--+.. + .. - .+.+||||++|..+... .|...
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-----G-~~-P-~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-----G-FL-P-NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-----C-SS-C-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-----C-CC-C-cEEECCCCCEEEEEcccccccccCCCC
Confidence 36677899888765432111113677777544332211211 1 11 1 38999999998766531 22234
Q ss_pred EEEEEEECCCCCccccc-cc-------ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCC
Q psy4818 168 NTLHIKDVDTGKDYPEV-LK-------NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKD 239 (734)
Q Consensus 168 ~~l~v~dl~~g~~~~~~-~~-------~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~ 239 (734)
..|.++|+++++.+... .. +.....+.+||||+++|...... ...|.++++.+.....
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~--------------~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP--------------APAVGVVDLEGKAFKR 174 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--------------SCEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC--------------CCeEEEEECCCCcEEE
Confidence 67999999999864322 11 11335789999999988764311 2368888887754211
Q ss_pred eeEEecCCCCeeE-----EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEE-ec
Q psy4818 240 IPVVEFPNGRSLG-----LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIA-NN 313 (734)
Q Consensus 240 ~~v~~~~~~~~~~-----~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s-~d 313 (734)
....+.....+ ..+..++||+.+++...... .+- +..+ . +. ...-..+.. ...|. ++
T Consensus 175 --tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g---~v~--~~~~-~---~~-~~~~~~~~~-----~~~~~~~d 237 (386)
T 3sjl_D 175 --MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG---TPE--ITHT-E---VF-HPEDEFLIN-----HPAYSQKA 237 (386)
T ss_dssp --EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS---CCE--EEEC-C---CC-SCTTSCBCS-----CCEEETTT
T ss_pred --EEECCCcceeecCCCceeEEECCCCCEEEEECCCCC---eEE--Eeec-c---ee-ccccccccc-----cceeEcCC
Confidence 11111100000 01367788887766543211 110 1101 0 00 000000110 01244 45
Q ss_pred CCeEEEEeCCCCCCceEEEEecCCCCCCCceEe--e----------cCCCCceeEEEEEeeCCEEEEEEEeC-------C
Q psy4818 314 GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL--I----------PEDENRTLDVVAAVANNKLIVHYIQN-------V 374 (734)
Q Consensus 314 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l--~----------~~~~~~~~~~~~~~~~~~l~~~~~~~-------~ 374 (734)
| +++|.+.. .+++.+|+.+........+ + ++. ...+ .+ ..+++++|+....+ .
T Consensus 238 G-~~~~vs~~----g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g-~q~~-a~-~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 238 G-RLVWPTYT----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG-WQQV-AY-HRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp T-EEEEEBTT----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS-SSCE-EE-ETTTTEEEEEEEECCTTCTTSC
T ss_pred C-cEEEEeCC----CEEEEEECCCCcceeecceeccccccccccccCCC-ccee-eE-CCCCCeEEEEeccccccccCCC
Confidence 5 56676662 4699999876531000111 1 111 1111 11 23457788876532 2
Q ss_pred ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+|+++|+++++.++.|..+. .+.++.+++|++.++|..+.. -..+..+|.
T Consensus 310 ~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~--~~~VsViD~ 361 (386)
T 3sjl_D 310 SRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTG--DKTLYIHDA 361 (386)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETT--TTEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCC--CCeEEEEEC
Confidence 3689999999999888887653 344677888987455444322 357999999
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-08 Score=102.77 Aligned_cols=242 Identities=12% Similarity=0.064 Sum_probs=141.8
Q ss_pred EEeeEEeCCC---CcEEEEEEeCCCCceEEEEEEECCCCC-cccccc-cccccCee------EEEcCCcEEEEEEEecCC
Q psy4818 143 ALKLYAFSDN---GKHFAYCLSKSGSDWNTLHIKDVDTGK-DYPEVL-KNVKFPSI------SWTHDHKGFFYNQYCDIN 211 (734)
Q Consensus 143 ~~~~~~~SPD---G~~la~~~~~~g~~~~~l~v~dl~~g~-~~~~~~-~~~~~~~~------~wSpDg~~l~y~~~~~~~ 211 (734)
.+..++|||+ |++|+.... . ..|++||+.+++ .+.... .......+ +|+||++.|+....+.
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~-- 139 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDF-G----GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG-- 139 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEET-T----SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS--
T ss_pred cEEEEEEcCCCCCCceEEEecC-C----CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC--
Confidence 4788999999 688876543 2 359999999887 332211 11122344 5689999887766432
Q ss_pred CCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCC--CeeEEEEE----EecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 212 GTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG--RSLGLHSE----VTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~--~~~~~~~~----~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
.|.+|++.++... +..+..... ......+. |+|||++|+.... ...|++||+.++
T Consensus 140 --------------~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~ 200 (357)
T 3i2n_A 140 --------------TVKVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNM 200 (357)
T ss_dssp --------------CEEEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET----TSEEEEEETTTT
T ss_pred --------------eEEEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc----CCeEEEEECccC
Confidence 6888888776422 222322111 11333444 8899999886432 258999999872
Q ss_pred CCCcccCCCCceeeeccccceEEE-EEe---cCCeEEEEeCCCCCCceEEEEecCCCCCCCceE--eecCCCCceeEEEE
Q psy4818 286 PDGKISGKFPLKTVIPGMDHHHEI-IAN---NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT--LIPEDENRTLDVVA 359 (734)
Q Consensus 286 ~~~~l~~~~~~~~l~~~~~~~~~~-~s~---dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~~~~~~ 359 (734)
. .............. |+| +++.++..+. +..|..+|+.++....... ..... ...+..+.
T Consensus 201 ~---------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~ 266 (357)
T 3i2n_A 201 A---------LRWETNIKNGVCSLEFDRKDISMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVR 266 (357)
T ss_dssp E---------EEEEEECSSCEEEEEESCSSSSCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEE
T ss_pred c---------eeeecCCCCceEEEEcCCCCCCCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEE
Confidence 1 11222222223333 888 8887776554 3468888887643211111 01122 33455555
Q ss_pred EeeCCE-EEEEEEeCCceeEEEEECCCCc-------------------eeeeeCCCCceEEeeccCcccceEEEEEecCC
Q psy4818 360 AVANNK-LIVHYIQNVRSVMDLHDLNTGK-------------------RLHSFPLDLGQITHISGRRKYNEVFYGFTSFL 419 (734)
Q Consensus 360 ~~~~~~-l~~~~~~~~~~~l~~~dl~~g~-------------------~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~ 419 (734)
+..++. ++++...++ .|++||+.++. .+..+....+.+..+.+++++..++++.+..
T Consensus 267 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d- 343 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAG--GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD- 343 (357)
T ss_dssp EETTEEEEEEEEETTS--EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT-
T ss_pred ECCCCCcEEEEEeCCC--cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC-
Confidence 555444 677776664 68888875442 2333444456677888999988887665543
Q ss_pred CCceEEEEeC
Q psy4818 420 QPGTIYHCNI 429 (734)
Q Consensus 420 ~P~~~~~~d~ 429 (734)
..+.+||+
T Consensus 344 --~~i~iw~~ 351 (357)
T 3i2n_A 344 --QTVRVLIV 351 (357)
T ss_dssp --SEEEEEEE
T ss_pred --CcEEEEEC
Confidence 47888988
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-09 Score=115.09 Aligned_cols=120 Identities=14% Similarity=0.042 Sum_probs=83.2
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHh------cCeEEEEEecccCCCCCchhhhccc
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH------FNGIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~------~G~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
+|..|+...+.++. +..|.||++||.+++... |... ...|.+ .||.|+++|+||.|.....
T Consensus 93 ~g~~i~~~~~~~~~----~~~~pllllHG~~~s~~~--~~~~-~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~------ 159 (408)
T 3g02_A 93 EGLTIHFAALFSER----EDAVPIALLHGWPGSFVE--FYPI-LQLFREEYTPETLPFHLVVPSLPGYTFSSGP------ 159 (408)
T ss_dssp TTEEEEEEEECCSC----TTCEEEEEECCSSCCGGG--GHHH-HHHHHHHCCTTTCCEEEEEECCTTSTTSCCS------
T ss_pred CCEEEEEEEecCCC----CCCCeEEEECCCCCcHHH--HHHH-HHHHhcccccccCceEEEEECCCCCCCCCCC------
Confidence 88888887765542 345778999999876543 4433 345554 5899999999995543211
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCC-cEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPK-YITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~-ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.......++++...+..|+++ ...+ ++.++|+|+||+++..++.++|++...++..+++
T Consensus 160 ~~~~~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~ 219 (408)
T 3g02_A 160 PLDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM 219 (408)
T ss_dssp CSSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence 112245677777777776665 2333 8999999999999999999998876665554443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-08 Score=99.00 Aligned_cols=243 Identities=11% Similarity=0.072 Sum_probs=142.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++.|+||++.+.|+-..+ ..|+++|.++++....... .....+.|+|||+.++ .. ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~-~~v~~i~~~~dg~l~v-~~-~~-------------- 109 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILE----RELHELHLASGRKTVHALP-FMGSALAKISDSKQLI-AS-DD-------------- 109 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGG----TEEEEEETTTTEEEEEECS-SCEEEEEEEETTEEEE-EE-TT--------------
T ss_pred CcCCeEeCCCCEEEEEECCC----CEEEEEECCCCcEEEEECC-CcceEEEEeCCCeEEE-EE-CC--------------
Confidence 45799999998888775433 3699999998874322222 2346789999997444 33 11
Q ss_pred CcEEEEEECCCCCCCCeeEEecCC--CCeeEEEEEEecCCcEEEEEEecCC---CCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPN--GRSLGLHSEVTDCGRYLLVSTSNNT---QGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~---~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|++++..++.. ..+..... ......++.++|||+. ++...... ....||.++ ++ . ...
T Consensus 110 --gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~-~g-~---------~~~ 173 (326)
T 2ghs_A 110 --GLFLRDTATGVL--TLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA-KG-K---------VTK 173 (326)
T ss_dssp --EEEEEETTTCCE--EEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE-TT-E---------EEE
T ss_pred --CEEEEECCCCcE--EEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe-CC-c---------EEE
Confidence 488888766532 12222111 1234567899999984 44332211 126899998 33 1 222
Q ss_pred eeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecC--CC-CCCCceEeecC-CCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 299 VIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLN--NP-CEKNWKTLIPE-DENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 299 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
+......... .|++||+.+|+.... ..+|++++++ ++ .....+.+..- ........+.+..++.+++....+
T Consensus 174 ~~~~~~~~~~i~~s~dg~~lyv~~~~---~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~ 250 (326)
T 2ghs_A 174 LFADISIPNSICFSPDGTTGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE 250 (326)
T ss_dssp EEEEESSEEEEEECTTSCEEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred eeCCCcccCCeEEcCCCCEEEEEECC---CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence 2222222222 389999999886543 3579999985 44 31111222211 112234455555546666655433
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccC-cccceEEEEEecCCC----------CceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGR-RKYNEVFYGFTSFLQ----------PGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~-~d~~~l~~~~ss~~~----------P~~~~~~d~ 429 (734)
..|++++. +|+.++.+..+...+.++.++ ++++.++++...... .+.+|++++
T Consensus 251 --~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p~~g~~~~~~~ 314 (326)
T 2ghs_A 251 --GAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGI 314 (326)
T ss_dssp --TEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred --CEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCCCChhHhccCCCCceEEEEeC
Confidence 47999998 688777777665556677776 777788877655432 145777765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-08 Score=104.34 Aligned_cols=242 Identities=11% Similarity=-0.006 Sum_probs=140.9
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC-Cc---ccc-cccccccCeeEEEc-CCcEEEEEEEecCCCCCCCCcc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG-KD---YPE-VLKNVKFPSISWTH-DHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g-~~---~~~-~~~~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~~~~~ 219 (734)
.++++|+...++++...+ ..|+|||+... +. +.. ......+..++|+| |++.|+....+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~----g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg---------- 104 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGG----GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC---------- 104 (402)
T ss_dssp SEEECSSEEEEEBCCSSS----CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS----------
T ss_pred cEEECCCeEEEEEEEcCC----CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC----------
Confidence 467787776555433333 46999998653 21 111 11222346899999 888777665432
Q ss_pred cccCCcEEEEEECCCCCC-----CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQD-----KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~-----~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
.|.+|++.++.. +.+..+.. +...+..+.|+|+|+.++++... ...|.+||+.++.
T Consensus 105 ------~v~vw~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~-------- 165 (402)
T 2aq5_A 105 ------TVMVWEIPDGGLVLPLREPVITLEG--HTKRVGIVAWHPTAQNVLLSAGC---DNVILVWDVGTGA-------- 165 (402)
T ss_dssp ------EEEEEECCTTCCSSCBCSCSEEEEC--CSSCEEEEEECSSBTTEEEEEET---TSCEEEEETTTTE--------
T ss_pred ------eEEEEEccCCCCccccCCceEEecC--CCCeEEEEEECcCCCCEEEEEcC---CCEEEEEECCCCC--------
Confidence 688889887632 12233332 33456789999999544444432 2579999998731
Q ss_pred Cceee--eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEE
Q psy4818 295 PLKTV--IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYI 371 (734)
Q Consensus 295 ~~~~l--~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (734)
....+ .......... |+|+|+.|+..+. +..|..+|+.++.. ...+........+..+.+..++.+++...
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 239 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGF 239 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTSSCEEEEET----TSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEE
T ss_pred ccEEEecCCCCCceEEEEECCCCCEEEEEec----CCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEec
Confidence 12222 1122223333 9999988876654 34699999987641 22221222222234444555466666552
Q ss_pred e-CCceeEEEEECCCCce-eeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 372 Q-NVRSVMDLHDLNTGKR-LHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 372 ~-~~~~~l~~~dl~~g~~-~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. .....|.+||+.+++. +...... ...+..+.++++++.++++.+.. ..+..||+
T Consensus 240 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d---g~i~i~d~ 297 (402)
T 2aq5_A 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD---SSIRYFEI 297 (402)
T ss_dssp CTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC---SCEEEEEE
T ss_pred cCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC---CeEEEEEe
Confidence 1 2336899999977654 2223222 34456778889988777665432 36888888
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-07 Score=99.70 Aligned_cols=251 Identities=12% Similarity=0.108 Sum_probs=149.4
Q ss_pred EEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc---ccccccCeeEEEcCCcEEEE
Q psy4818 128 EVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---LKNVKFPSISWTHDHKGFFY 204 (734)
Q Consensus 128 ~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~~~~~~~~~~wSpDg~~l~y 204 (734)
..+||...+..+ +.+.-+.||+++ .||.+.+ .+|+|||+.+|+.+... .....+..++|||||+.|+.
T Consensus 94 ~~~l~ap~~~~d--~y~~~l~wS~~n-~lAvgld------~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las 164 (420)
T 4gga_A 94 DRILDAPEIRND--YYLNLVDWSSGN-VLAVALD------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 164 (420)
T ss_dssp SEEEECTTCCCC--TTCBCEEECTTS-EEEEEET------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ceEEECCCCccc--ccceeEEECCCC-EEEEEeC------CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE
Confidence 456776655433 225668999865 7887763 37999999999864422 12223468999999998887
Q ss_pred EEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 205 NQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
...+. .|.+|++.++. .+.....+..... ++++|++.|+... ....++++|...
T Consensus 165 gs~Dg----------------~v~iWd~~~~~----~~~~~~~h~~~v~--~~s~~~~~l~sgs----~d~~i~~~d~~~ 218 (420)
T 4gga_A 165 GTSSA----------------EVQLWDVQQQK----RLRNMTSHSARVG--SLSWNSYILSSGS----RSGHIHHHDVRV 218 (420)
T ss_dssp EETTS----------------CEEEEETTTTE----EEEEECCCSSCEE--EEEEETTEEEEEE----TTSEEEEEETTS
T ss_pred EECCC----------------eEEEEEcCCCc----EEEEEeCCCCceE--EEeeCCCEEEEEe----CCCceeEeeecc
Confidence 66433 68888887653 2332223333333 4556777766322 226788899876
Q ss_pred CCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCC--CceEeecCCCCceeEEEEE-
Q psy4818 285 LPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEK--NWKTLIPEDENRTLDVVAA- 360 (734)
Q Consensus 285 ~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~~~~- 360 (734)
. . .....+......... .|+++|+.++..++. ..+..++..++... .......+ ...+....+
T Consensus 219 ~-~------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D----~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~ 285 (420)
T 4gga_A 219 A-E------HHVATLSGHSQEVCGLRWAPDGRHLASGGND----NLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWC 285 (420)
T ss_dssp S-S------CEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEEC
T ss_pred c-c------eeeEEecccccceeeeeecCCCCeeeeeecc----ccceEEeeccccccceeeeeeccc--CCceeeeeeC
Confidence 2 1 112222222233333 388999887766553 35888888764321 11222222 233344433
Q ss_pred eeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 361 VANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 361 ~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+..+++.........|.+||+.+|+....+.... .+..+.++++++.++....+. -..+++||+
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~--d~~I~iwd~ 351 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFA--QNQLVIWKY 351 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTT--TCCEEEEET
T ss_pred CCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecC--CCEEEEEEC
Confidence 333556655543333579999999998777665443 344667778888776654322 246899998
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-08 Score=113.92 Aligned_cols=239 Identities=13% Similarity=0.090 Sum_probs=143.6
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..++|||||++|+-... ...|++||+.+++.+.... ....+..++|||||+.|+-.+.+.
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~-----Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~---------- 494 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSW-----DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR---------- 494 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS----------
T ss_pred CCcEEEEEECCCCCEEEEEeC-----CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC----------
Confidence 345788999999999885543 2479999999987543222 222346889999999888766433
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEe-cCCCCeeEEEEEEecCCc-EEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVE-FPNGRSLGLHSEVTDCGR-YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|.+|++.+.. ...+.. ...+...+..+.|+|++. .++++.+. ...|.+||+.++. ...
T Consensus 495 ------~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~vwd~~~~~--------~~~ 555 (694)
T 3dm0_A 495 ------TIKLWNTLGEC--KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW---DKTVKVWNLSNCK--------LRS 555 (694)
T ss_dssp ------CEEEECTTSCE--EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTCC--------EEE
T ss_pred ------EEEEEECCCCc--ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC---CCeEEEEECCCCc--------EEE
Confidence 57777764321 111111 112334577899999984 23333322 2579999998721 112
Q ss_pred eeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 298 TVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 298 ~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
.+..+....... |+|||+.|+..+. +..|.+||+.++. .+..-.....+..+.+..++.+++....+
T Consensus 556 ~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--- 623 (694)
T 3dm0_A 556 TLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGK-----KLYSLEANSVIHALCFSPNRYWLCAATEH--- 623 (694)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTE-----EEECCBCSSCEEEEEECSSSSEEEEEETT---
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc-----eEEEecCCCcEEEEEEcCCCcEEEEEcCC---
Confidence 222222333333 9999987765443 3458889997754 22221123345556666546666555433
Q ss_pred eEEEEECCCCceeeeeCCCC-------------------ceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 377 VMDLHDLNTGKRLHSFPLDL-------------------GQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l~~~~-------------------g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.|++||+.+++.++.+.... ..+.++.++++++.|+ +.+.. ..+.++|+
T Consensus 624 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~-sgs~D---g~i~iW~i 691 (694)
T 3dm0_A 624 GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF-SGYTD---GVIRVWGI 691 (694)
T ss_dssp EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE-EEETT---SEEEEEEC
T ss_pred CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE-EEcCC---CeEEEEec
Confidence 49999998887665553210 1245677888887654 33332 36788877
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-10 Score=128.78 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=85.6
Q ss_pred EEeEEEEEe-----ccccCCCC----CcEEEEecCCCCCcCC---ccccHHHHHHHHhcCeEEEEEecccCC-CCCchhh
Q psy4818 471 RVPMYIIHR-----VGALRNRR----NPVIIYGYGGYGVSVL---PTFSISRCMFLRHFNGIYAIPNIRGGG-ELGEDWH 537 (734)
Q Consensus 471 ~i~~~~~~p-----~~~~~~~~----~P~vv~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~rG~~-~~g~~~~ 537 (734)
.+.+.++.| ... ..++ .|+||++|||...... ..+.. ..|+++|++|+.+|||.+. ||...
T Consensus 90 cL~lnv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~---~~l~~~g~vvv~~nYRl~~~Gf~~~-- 163 (551)
T 2fj0_A 90 CIHANIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGP---EYLVSKDVIVITFNYRLNVYGFLSL-- 163 (551)
T ss_dssp CCEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBC---TTGGGGSCEEEEECCCCHHHHHCCC--
T ss_pred CeEEEEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCH---HHHHhCCeEEEEeCCcCCccccccC--
Confidence 356777788 321 2234 8999999998533222 22322 3455679999999999642 22111
Q ss_pred hccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcc
Q psy4818 538 NAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGAL 603 (734)
Q Consensus 538 ~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~ 603 (734)
......+...+.|+.++++|+.++- -.||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 164 -~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 164 -NSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp -SSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred -cccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 0001123345899999999998762 2699999999999999999998875 467899999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.01 E-value=9.7e-08 Score=107.90 Aligned_cols=274 Identities=9% Similarity=0.065 Sum_probs=161.5
Q ss_pred CcEEeCCeEEEEEEcCCCCeeEEEEEeCCCC----CeEEEeCCCCcCCCCcEE-EeeEEeCC--CCcEEEEEEeCCCCce
Q psy4818 95 APQRQENNYFYFHNKGLQNHSILYVQRNLTG----STEVFLDPNKLSKDGTTA-LKLYAFSD--NGKHFAYCLSKSGSDW 167 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~l~d~~~~~~~~~~~-~~~~~~SP--DG~~la~~~~~~g~~~ 167 (734)
...++|.++++.. ...-.+|-.. ++ .....+. ++... +..++||| ||++||.... .
T Consensus 25 ~~spdg~~l~~~~----~~~v~v~~~~--~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~-d---- 87 (615)
T 1pgu_A 25 SYDPTTNAIAYPC----GKSAFVRCLD--DGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDE-S---- 87 (615)
T ss_dssp EEETTTTEEEEEE----TTEEEEEECC--SSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEET-T----
T ss_pred EECCCCCEEEEec----CCeEEEEECC--CCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecC-C----
Confidence 3457888888765 2234445433 33 2233332 22345 78999999 9999987654 2
Q ss_pred EEEEEEECCCC--------Ccccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC
Q psy4818 168 NTLHIKDVDTG--------KDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 168 ~~l~v~dl~~g--------~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~ 238 (734)
..|++||+.++ +.+.. ......+..++|+|||+.|+....+. .....|++++.+.
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~------------~~~~~v~~~d~~~---- 151 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR------------DNFGVFISWDSGN---- 151 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS------------SCSEEEEETTTCC----
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC------------CCccEEEEEECCC----
Confidence 36999999765 22211 11222346889999999998877532 1223677766321
Q ss_pred CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc---ceEEE-EEec-
Q psy4818 239 DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD---HHHEI-IANN- 313 (734)
Q Consensus 239 ~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~---~~~~~-~s~d- 313 (734)
.+.....+...+..+.|+|||++++++... ...|.+||+.++ .....+..... ..... |+|+
T Consensus 152 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~v~vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (615)
T 1pgu_A 152 --SLGEVSGHSQRINACHLKQSRPMRSMTVGD---DGSVVFYQGPPF--------KFSASDRTHHKQGSFVRDVEFSPDS 218 (615)
T ss_dssp --EEEECCSCSSCEEEEEECSSSSCEEEEEET---TTEEEEEETTTB--------EEEEEECSSSCTTCCEEEEEECSTT
T ss_pred --cceeeecCCccEEEEEECCCCCcEEEEEeC---CCcEEEEeCCCc--------ceeeeecccCCCCceEEEEEECCCC
Confidence 222323344467789999999965555433 268999998772 11122222222 23333 9999
Q ss_pred CCeEEEEeCCCCCCceEEEEecCCCCCCCceEee-cC--CCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceee
Q psy4818 314 GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI-PE--DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH 390 (734)
Q Consensus 314 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~ 390 (734)
|+.|+..+.. ..|..+|+.++. ....+ .. .....+..+.+. ++..+++...+ ..|.+||+.+++.+.
T Consensus 219 ~~~l~~~~~d----g~i~vwd~~~~~---~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 219 GEFVITVGSD----RKISCFDGKSGE---FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD--ATIRVWDVTTSKCVQ 288 (615)
T ss_dssp CCEEEEEETT----CCEEEEETTTCC---EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT--SEEEEEETTTTEEEE
T ss_pred CCEEEEEeCC----CeEEEEECCCCC---EeEEecccccccCCceEEEEEc-CCCEEEEEcCC--CcEEEEECCCCcEEE
Confidence 8877765543 459999997765 23333 20 223445555555 46666666555 479999998888776
Q ss_pred eeCCC----CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 391 SFPLD----LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 391 ~l~~~----~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..+ ...+..+.+. +++.++.. +. -..++.||+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~-~~---~g~i~~~d~ 326 (615)
T 1pgu_A 289 KWTLDKQQLGNQQVGVVAT-GNGRIISL-SL---DGTLNFYEL 326 (615)
T ss_dssp EEECCTTCGGGCEEEEEEE-ETTEEEEE-ET---TSCEEEEET
T ss_pred EEcCCCCcccCceeEEEeC-CCCeEEEE-EC---CCCEEEEEC
Confidence 66543 2334344443 55555443 33 246888888
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=100.96 Aligned_cols=233 Identities=9% Similarity=-0.010 Sum_probs=135.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++.|+|||+.|+++....+ .|+++|.+++ ............+++++|||+ |+.+.. .
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~----~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~---------------~ 88 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQN----RTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGH-LIACSH---------------G 88 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGT----EEEEEETTSC-EEEEESSCSSEEEEEECTTCC-EEEEET---------------T
T ss_pred ccCCeEeCCCCEEEEEeCCCC----EEEEEECCCC-eEEEECCCCCcceeeECCCCc-EEEEec---------------C
Confidence 568999999998777665443 6999999988 322222222235789999997 444332 1
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCC--eeEEEEEEecCCcEEEEEEec-C-------------CCCceEEEEeCCCCCC
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGR--SLGLHSEVTDCGRYLLVSTSN-N-------------TQGSDLHYFDLHSLPD 287 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~--~~~~~~~~SpDG~~l~~~~~~-~-------------~~~~~i~~~d~~~~~~ 287 (734)
...|++++..++... .+....... ....++.++|||+.+ ++... + .....||.++.++ .
T Consensus 89 ~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~i~~d~~G~l~-vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-~- 163 (296)
T 3e5z_A 89 LRRLERQREPGGEWE--SIADSFEGKKLNSPNDVCLAPDGSLW-FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-T- 163 (296)
T ss_dssp TTEEEEECSTTCCEE--EEECEETTEECCCCCCEEECTTSCEE-EEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-C-
T ss_pred CCeEEEEcCCCCcEE--EEeeccCCCCCCCCCCEEECCCCCEE-EECCccccccccccccccccCCCcEEEEECCCC-C-
Confidence 236888887655321 121111111 012357899999844 33210 0 0124789888763 1
Q ss_pred CcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecC-CCCCCCc---eEeecCCCCceeEEEEEee
Q psy4818 288 GKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLN-NPCEKNW---KTLIPEDENRTLDVVAAVA 362 (734)
Q Consensus 288 ~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~---~~l~~~~~~~~~~~~~~~~ 362 (734)
...+......... .|+|||+.+ +.... ..+|++++++ ++. + ..++ .........+.+..
T Consensus 164 --------~~~~~~~~~~~~gi~~s~dg~~l-v~~~~---~~~i~~~~~~~~g~---~~~~~~~~-~~~~~~p~~i~~d~ 227 (296)
T 3e5z_A 164 --------LSAPIRDRVKPNGLAFLPSGNLL-VSDTG---DNATHRYCLNARGE---TEYQGVHF-TVEPGKTDGLRVDA 227 (296)
T ss_dssp --------EEEEECCCSSEEEEEECTTSCEE-EEETT---TTEEEEEEECSSSC---EEEEEEEE-CCSSSCCCSEEEBT
T ss_pred --------EEEeecCCCCCccEEECCCCCEE-EEeCC---CCeEEEEEECCCCc---CcCCCeEe-eCCCCCCCeEEECC
Confidence 2222222222222 389999877 54332 3469999986 332 2 2333 22122223444555
Q ss_pred CCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeecc-CcccceEEEEEecCCCCceEEEEeC
Q psy4818 363 NNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG-RRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~-~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.+++.. + ..|++|+. +|+.+..+..+.+ +.++.+ +++++.|+++... .+|++++
T Consensus 228 ~G~l~v~~--~--~~v~~~~~-~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~ 284 (296)
T 3e5z_A 228 GGLIWASA--G--DGVHVLTP-DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIET 284 (296)
T ss_dssp TSCEEEEE--T--TEEEEECT-TSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEEC
T ss_pred CCCEEEEc--C--CeEEEECC-CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEc
Confidence 56777666 2 47999998 5887777776654 555555 5777788876542 7999998
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-08 Score=104.76 Aligned_cols=243 Identities=8% Similarity=0.048 Sum_probs=144.2
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc--ccccccCeeEEEcC---CcEEEEEEEecCCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV--LKNVKFPSISWTHD---HKGFFYNQYCDINGTADG 216 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~--~~~~~~~~~~wSpD---g~~l~y~~~~~~~~~~~~ 216 (734)
..+..++|||||++++.+.... .+...|++||+.+++..... .....+..+.|+|| |+.|+....+.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg------- 90 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG------- 90 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS-------
T ss_pred CceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC-------
Confidence 3478999999998877665431 11368999999998753321 12223468899999 57776665332
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEE------EEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS------EVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~------~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l 290 (734)
.|.+|++.+... .+..+.. +...+..+ +|+|||++|+.... ...|.+||+.++..
T Consensus 91 ---------~i~iwd~~~~~~-~~~~~~~--~~~~v~~~~~~~~~~~s~~~~~l~~~~~----d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 91 ---------NLHIWNLEAPEM-PVYSVKG--HKEIINAIDGIGGLGIGEGAPEIVTGSR----DGTVKVWDPRQKDD--- 151 (357)
T ss_dssp ---------CEEEECTTSCSS-CSEEECC--CSSCEEEEEEESGGGCC-CCCEEEEEET----TSCEEEECTTSCSS---
T ss_pred ---------eEEEEeCCCCCc-cEEEEEe--cccceEEEeeccccccCCCccEEEEEeC----CCeEEEEeCCCCCC---
Confidence 688888887642 2223332 22234455 46899999875432 25799999987321
Q ss_pred cCCCCceeeecccc----ceEEE-----EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe
Q psy4818 291 SGKFPLKTVIPGMD----HHHEI-----IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV 361 (734)
Q Consensus 291 ~~~~~~~~l~~~~~----~~~~~-----~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 361 (734)
....+..... ..... |+++++.++..+. +..|..+|+.++. ....... ...+..+.+.
T Consensus 152 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~---~~~~~~~--~~~v~~~~~~ 218 (357)
T 3i2n_A 152 ----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMA---LRWETNI--KNGVCSLEFD 218 (357)
T ss_dssp ----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTE---EEEEEEC--SSCEEEEEES
T ss_pred ----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCc---eeeecCC--CCceEEEEcC
Confidence 1222211111 11111 5688887776554 3469999998765 2222222 2344555555
Q ss_pred e---CCEEEEEEEeCCceeEEEEECCCCceeeeeC-----CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 362 A---NNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP-----LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 362 ~---~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~-----~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. ++..+++...+ ..|++||+.+++....+. ...+.+..+.+++++..++++.+.. ..+..||+
T Consensus 219 ~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~ 289 (357)
T 3i2n_A 219 RKDISMNKLVATSLE--GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA---GGLHLWKY 289 (357)
T ss_dssp CSSSSCCEEEEEEST--TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT---SEEEEEEE
T ss_pred CCCCCCCEEEEECCC--CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC---CcEEEeec
Confidence 3 35555555555 478889886655433332 4456677888889887566655543 36888888
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-08 Score=105.76 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=141.0
Q ss_pred CcEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCc-------ccc-cccccccCeeEEEcCCcEEEEEEEecC
Q psy4818 140 GTTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKD-------YPE-VLKNVKFPSISWTHDHKGFFYNQYCDI 210 (734)
Q Consensus 140 ~~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~-------~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~ 210 (734)
+...+..++||| |+++||.... + ..|++||+.++.. +.. ......+..+.|+|||+.++++...+
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~-d----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d- 153 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSE-D----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD- 153 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEET-T----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-
T ss_pred CCCCEEEEEeCCCCCCEEEEEeC-C----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-
Confidence 445688999999 8998886553 2 4799999998742 211 11222346799999996455554321
Q ss_pred CCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcc
Q psy4818 211 NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290 (734)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l 290 (734)
..|++|++.++. .+..+....+...+..+.|+|||++|+.... ...|++||+.++.
T Consensus 154 --------------g~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~---- 209 (402)
T 2aq5_A 154 --------------NVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPRKGT---- 209 (402)
T ss_dssp --------------SCEEEEETTTTE--EEEEECTTTCCSCEEEEEECTTSSCEEEEET----TSEEEEEETTTTE----
T ss_pred --------------CEEEEEECCCCC--ccEEEecCCCCCceEEEEECCCCCEEEEEec----CCcEEEEeCCCCc----
Confidence 268899988653 2222210233446678999999999886432 2689999998731
Q ss_pred cCCCCceee-eccccc-eEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEE
Q psy4818 291 SGKFPLKTV-IPGMDH-HHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKL 366 (734)
Q Consensus 291 ~~~~~~~~l-~~~~~~-~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l 366 (734)
....+ ...... ... .|+++|+.|+.... ...+..|..+|+.+... ............ +..+.+. +++.+
T Consensus 210 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~-v~~~~~s~~~~~l 282 (402)
T 2aq5_A 210 ----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLEE-PLSLQELDTSSG-VLLPFFDPDTNIV 282 (402)
T ss_dssp ----EEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCSS-CSEEEECCCCSS-CEEEEEETTTTEE
T ss_pred ----eeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccccC-CceEEeccCCCc-eeEEEEcCCCCEE
Confidence 12222 111111 222 48998775554322 12356799999976542 112222122123 3344444 43455
Q ss_pred EEEEEeCCceeEEEEECCCCce-eeeeCC--CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 367 IVHYIQNVRSVMDLHDLNTGKR-LHSFPL--DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 367 ~~~~~~~~~~~l~~~dl~~g~~-~~~l~~--~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++....+ ..|++|++.+++. +..+.. ..+.+.++.+++++..++ ++. ..+..|++
T Consensus 283 ~~~g~~d--g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~---s~~---~~~~~~~l 340 (402)
T 2aq5_A 283 YLCGKGD--SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV---NKC---EIARFYKL 340 (402)
T ss_dssp EEEETTC--SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG---GGT---EEEEEEEE
T ss_pred EEEEcCC--CeEEEEEecCCCcceEeecccccCCcccceEEecccccce---ecc---eeEEEEEc
Confidence 5554344 4788999977762 333322 134566777888875443 121 25666776
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=8.3e-07 Score=93.18 Aligned_cols=287 Identities=14% Similarity=0.063 Sum_probs=150.9
Q ss_pred CcEEeCCeEEEEEEcCCCC--eeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEe-----CCCCce
Q psy4818 95 APQRQENNYFYFHNKGLQN--HSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLS-----KSGSDW 167 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~-----~~g~~~ 167 (734)
.|.+++.++| ..+.+... -..+++.+...+....-+.. +.. - .+.+||||++|+.+.. ..|...
T Consensus 10 ~~~~~~~~~y-v~~~~~~~~~d~~v~v~D~~t~~~~~~i~~------g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~ 80 (361)
T 2oiz_A 10 VSAPQENRIY-VMDSVFMHLTESRVHVYDYTNGKFLGMVPT------AFN-G-HVQVSNDGKKIYTMTTYHERITRGKRS 80 (361)
T ss_dssp CSSCGGGEEE-EEECCGGGGGGCEEEEEETTTCCEEEEEEC------CEE-E-EEEECTTSSEEEEEEEEETTSSSSCEE
T ss_pred cCCCCCCEEE-EECCCCCccccCeEEEEECCCCeEEEEecC------CCC-C-ceEECCCCCEEEEEEecccccccCCCC
Confidence 3445666654 44432111 12577777554443222221 222 3 7899999998876653 133345
Q ss_pred EEEEEEECCCCCccccc-cc------ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCe
Q psy4818 168 NTLHIKDVDTGKDYPEV-LK------NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDI 240 (734)
Q Consensus 168 ~~l~v~dl~~g~~~~~~-~~------~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~ 240 (734)
..|.++|+++++.+... .. +.....+++||||++||...... ...|.++++.+..
T Consensus 81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~--------------~~~v~v~d~~~~~---- 142 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP--------------ATSIGIVDVAKGD---- 142 (361)
T ss_dssp EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS--------------SEEEEEEETTTTE----
T ss_pred CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC--------------CCeEEEEECCCCc----
Confidence 67999999988754321 11 12235789999999887765421 2368888887652
Q ss_pred eEEe-cCCCCee---------EEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceEEE
Q psy4818 241 PVVE-FPNGRSL---------GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHEI 309 (734)
Q Consensus 241 ~v~~-~~~~~~~---------~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~~ 309 (734)
.+.. .+-...+ ...+..++||+.+++..... . ..+....... .+. +.......
T Consensus 143 ~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~-g-~~~~~~~~~~--------------~~~~~~~~~~~~ 206 (361)
T 2oiz_A 143 YVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED-G-KVASQSRSKQ--------------MFSVKDDPIFIA 206 (361)
T ss_dssp EEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT-S-SEEEEEECCC--------------CSCTTTSCBCSC
T ss_pred EEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC-C-cEeeeccccc--------------eEcCCCCceEEE
Confidence 2222 1111100 01134455555444432211 1 1111111000 000 00111111
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee-------------cCCCCceeEEEEEeeCCEEEEEEEeCC--
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI-------------PEDENRTLDVVAAVANNKLIVHYIQNV-- 374 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 374 (734)
.+++++.+++.+.. .+++.+|+.+.... ....+ +.. ...+ ....+++++|+....++
T Consensus 207 ~~~~g~~~~~~~~~----~~v~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~g-~~~~--a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 207 PALDKDKAHFVSYY----GNVYSADFSGDEVK-VDGPWSLLNDEDKAKNWVPGG-YNLV--GLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp CEECSSEEEEEBTT----SEEEEEECSSSSCE-EEEEEESCCHHHHHTTCEECC-SSCE--EEETTTTEEEEEEESSCCT
T ss_pred ecccCCEEEEEeCC----CeEEEEEecCCCce-ecccccccCccccccccccCC-eeEE--EEecCCCeEEEEEccCCCc
Confidence 46888888877642 36999998654310 00100 010 0111 22334467777654222
Q ss_pred ------ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEee
Q psy4818 375 ------RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRE 446 (734)
Q Consensus 375 ------~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~ 446 (734)
...|++||+++++.+..+..+. ..++.+++|++.++.+ +. ..+.++|+ +++ .++++..
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~-n~----~~v~v~D~-----~t~--~l~~~~~ 342 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL-DG----GNVNVYDI-----SQP--EPKLLRT 342 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE-CS----SCEEEEEC-----SSS--SCEEEEE
T ss_pred ccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe-CC----CeEEEEEC-----CCC--cceeeEE
Confidence 3489999999999888887654 5678888999866543 32 68999999 566 3344444
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-07 Score=98.48 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=142.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
+..+.||++ ..++.+. + ..|++||+.+|+...... ....+..++|+|||+.|+....+.
T Consensus 96 ~~~~~~s~~-~l~~~~~--d----~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg------------ 156 (401)
T 4aez_A 96 LNLLDWSNL-NVVAVAL--E----RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG------------ 156 (401)
T ss_dssp CBCEEECTT-SEEEEEE--T----TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS------------
T ss_pred EEEEeecCC-CEEEEEC--C----CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC------------
Confidence 455788863 3444332 2 369999999998643222 122346899999999888776432
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
.|.+|++.++. .+..+. .+...+..+.| +++.|+... ....|++||+.... .....+..
T Consensus 157 ----~i~iwd~~~~~--~~~~~~--~~~~~v~~~~~--~~~~l~~~~----~dg~i~i~d~~~~~-------~~~~~~~~ 215 (401)
T 4aez_A 157 ----LVDIYDVESQT--KLRTMA--GHQARVGCLSW--NRHVLSSGS----RSGAIHHHDVRIAN-------HQIGTLQG 215 (401)
T ss_dssp ----CEEEEETTTCC--EEEEEC--CCSSCEEEEEE--ETTEEEEEE----TTSEEEEEETTSSS-------CEEEEEEC
T ss_pred ----eEEEEECcCCe--EEEEec--CCCCceEEEEE--CCCEEEEEc----CCCCEEEEecccCc-------ceeeEEcC
Confidence 68888887653 222222 23334566777 566666432 22689999998511 11222323
Q ss_pred cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee-CCEEEEEEEeCCceeEE
Q psy4818 302 GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA-NNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 302 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~l~ 379 (734)
........ |+|+++.|+..+.. ..|..+|+.++. ....+... ...+..+.+.. +..++++........|+
T Consensus 216 ~~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~---~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 216 HSSEVCGLAWRSDGLQLASGGND----NVVQIWDARSSI---PKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----SCEEEEETTCSS---EEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred CCCCeeEEEEcCCCCEEEEEeCC----CeEEEccCCCCC---ccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 33333333 89998877765543 359999998754 22222222 23344555543 45666665422235799
Q ss_pred EEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 380 LHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 380 ~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+||+.+++.+..+.. ...+..+.+++++..++....+. -..+.+||+
T Consensus 288 i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~--dg~i~v~~~ 334 (401)
T 4aez_A 288 FWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFP--DNNLSIWSY 334 (401)
T ss_dssp EEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECTT--TCEEEEEEE
T ss_pred EEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEEEeecC--CCcEEEEec
Confidence 999988887777753 34577888999988776654222 357888988
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-08 Score=119.93 Aligned_cols=244 Identities=14% Similarity=0.123 Sum_probs=145.2
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..++|||||++||.... + ..|.+||+.+++.+.... ....+..++|||||+.|+....+.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~-d----~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---------- 679 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGA-D----KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK---------- 679 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred cccEEEEEECCCCCEEEEEeC-C----CeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCC----------
Confidence 345888999999999986643 2 369999999998643222 222346899999999888766432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|.+|++.++. .+..+.. +...+..+.|+|++...++.+.. ....|.+||+.++. ....+
T Consensus 680 ------~v~vwd~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~--------~~~~~ 739 (1249)
T 3sfz_A 680 ------KVKIWDSATGK--LVHTYDE--HSEQVNCCHFTNKSNHLLLATGS--NDFFLKLWDLNQKE--------CRNTM 739 (1249)
T ss_dssp ------EEEEEETTTCC--EEEEEEC--CSSCEEEEEECSSSSCCEEEEEE--TTSCEEEEETTSSS--------EEEEE
T ss_pred ------eEEEEECCCCc--eEEEEcC--CCCcEEEEEEecCCCceEEEEEe--CCCeEEEEECCCcc--------hhhee
Confidence 69999998764 2223332 34456789999976543333222 22579999998732 11222
Q ss_pred eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC-------------------------------------
Q psy4818 300 IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK------------------------------------- 341 (734)
Q Consensus 300 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------------------------------- 341 (734)
.......... |+|+|+.++..+.. +.|..||+.++...
T Consensus 740 ~~h~~~v~~~~~sp~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 740 FGHTNSVNHCRFSPDDELLASCSAD----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp CCCSSCEEEEEECSSTTEEEEEESS----SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred cCCCCCEEEEEEecCCCEEEEEECC----CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 2222222232 77877766654432 34666665432100
Q ss_pred --------------CceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcc
Q psy4818 342 --------------NWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRK 407 (734)
Q Consensus 342 --------------~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d 407 (734)
.....+.......+..+.+..++.++++...+ ..+.+|++.+++.+..+....+.+.++.++++
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd 893 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ--YCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 893 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS--SCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCceeeecCCCccceEEEEECCC
Confidence 00000110111222233333334555555444 46899999888877777766777888999998
Q ss_pred cceEEEEEecCCCCceEEEEeC
Q psy4818 408 YNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 408 ~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.++.. +.. ..+..||+
T Consensus 894 g~~l~s~-s~d---g~v~vw~~ 911 (1249)
T 3sfz_A 894 GSSFLTA-SDD---QTIRVWET 911 (1249)
T ss_dssp SSEEEEE-ETT---SCEEEEEH
T ss_pred CCEEEEE-eCC---CeEEEEEc
Confidence 8765543 332 35777776
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-08 Score=100.40 Aligned_cols=245 Identities=10% Similarity=0.008 Sum_probs=141.2
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC----cccccccccccCeeEEEcCCc-EEEEEEEecCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK----DYPEVLKNVKFPSISWTHDHK-GFFYNQYCDINGTAD 215 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~----~~~~~~~~~~~~~~~wSpDg~-~l~y~~~~~~~~~~~ 215 (734)
...+..++|||||++|+.+... ..|++||+.+++ ..........+..++|+||++ .|+....+.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------ 79 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG------ 79 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS------
T ss_pred CCcEEEEEEcCCCCEEEEEcCC-----CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC------
Confidence 3458899999999999876532 369999998876 322222222346899999999 777766432
Q ss_pred CCcccccCCcEEEEEEC-CCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC-C
Q psy4818 216 GTETTAHMGQKIYYHVL-GTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG-K 293 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l-~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~ 293 (734)
.|++|++ .+... ..+....+...+..+.|+| ++.|+.... ...|.+||+.+........ .
T Consensus 80 ----------~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 80 ----------EILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASW----DGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp ----------CEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEET----TSEEEEECHHHHTTBCEEEEE
T ss_pred ----------eEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcC----CCeEEEEcccccccccccccC
Confidence 6888988 66532 2222200334567899999 888875432 2579999876400000000 0
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCC-CCCCCceEeecCCCCceeEEEEEee-CCEEEEEE
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNN-PCEKNWKTLIPEDENRTLDVVAAVA-NNKLIVHY 370 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~ 370 (734)
..... +......... |++++ ++..+. +..|..+|+.+ ... ......... ...+..+.+.. ++.+++..
T Consensus 142 ~~~~~-~~~~~~v~~~~~~~~~--l~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 142 LNSNN-TKVKNKIFTMDTNSSR--LIVGMN----NSQVQWFRLPLCEDD-NGTIEESGL-KYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp SCSSS-SSSCCCEEEEEECSSE--EEEEES----TTEEEEEESSCCTTC-CCEEEECSC-SSCEEEEEECSGGGCEEEEE
T ss_pred CeeeE-EeeCCceEEEEecCCc--EEEEeC----CCeEEEEECCccccc-cceeeecCC-CCceeEEEECCCCCCEEEEE
Confidence 00111 1111222222 66654 554433 34699999987 431 122222222 33455555554 45666666
Q ss_pred EeCCceeEEEEECCCC------ceeeeeCCCC---------ceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 371 IQNVRSVMDLHDLNTG------KRLHSFPLDL---------GQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 371 ~~~~~~~l~~~dl~~g------~~~~~l~~~~---------g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..++ .+.+|++..+ +....+.... +.+..+.++++++.++... . -..++.||+
T Consensus 213 ~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~---dg~i~vwd~ 280 (342)
T 1yfq_A 213 SIDG--RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-S---DGIISCWNL 280 (342)
T ss_dssp ETTS--EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-T---TSCEEEEET
T ss_pred ecCC--cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec-C---CceEEEEcC
Confidence 6654 6777777554 4444444332 2677888899887665433 2 246999999
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=100.98 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=113.3
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcC---eEEEEEecccCCC--CCchhh--------hccccccCC------Cch
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFN---GIYAIPNIRGGGE--LGEDWH--------NAGRLLKKQ------NCF 549 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G---~~v~~~~~rG~~~--~g~~~~--------~~~~~~~~~------~~~ 549 (734)
+.||++||..+... .|.. +...|++.| +.|+.+++++.|. +...+. ..+...+.. ...
T Consensus 5 ~pvv~iHG~~~~~~--~~~~-~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a 81 (250)
T 3lp5_A 5 APVIMVPGSSASQN--RFDS-LITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQA 81 (250)
T ss_dssp CCEEEECCCGGGHH--HHHH-HHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHH
T ss_pred CCEEEECCCCCCHH--HHHH-HHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHH
Confidence 45677899766543 3333 345666666 6777777776442 100110 000011100 123
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-----CCceeEEEEcCCcchhccccccccCcccccccCCC
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR-----PELYGAALILVGALDMLRFNKFTIAYYSESEFGSP 624 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~ 624 (734)
+++.++++.|.++. ..+++.++||||||+++..++.++ |+.++.+|+..+..+..... . .
T Consensus 82 ~~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~-----~--------~ 146 (250)
T 3lp5_A 82 VWLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS-----T--------T 146 (250)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCC-----S--------S
T ss_pred HHHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccc-----c--------c
Confidence 66777788876652 446899999999999999988876 56778888766544332110 0 0
Q ss_pred CCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecC----CCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC--C
Q psy4818 625 NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGD----HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ--D 698 (734)
Q Consensus 625 ~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~----~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~--~ 698 (734)
.....+..|....+ .+. .+.| +|+++|+ .|..||...++.+...++.. ......+.+. +
T Consensus 147 ~~~~~~~~l~~~~~--~lp-----~~vp-vl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~-------~~~~~~~~v~g~~ 211 (250)
T 3lp5_A 147 AKTSMFKELYRYRT--GLP-----ESLT-VYSIAGTENYTSDGTVPYNSVNYGKYIFQDQ-------VKHFTEITVTGAN 211 (250)
T ss_dssp CCCHHHHHHHHTGG--GSC-----TTCE-EEEEECCCCCCTTTBCCHHHHTTHHHHHTTT-------SSEEEEEECTTTT
T ss_pred ccCHHHHHHHhccc--cCC-----CCce-EEEEEecCCCCCCceeeHHHHHHHHHHhccc-------ccceEEEEEeCCC
Confidence 11123333432211 111 2344 9999999 89999988877766666543 2333334444 5
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 699 AGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 699 ~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
++|..... + -+....+.+||.
T Consensus 212 a~H~~l~e-~--~~v~~~I~~FL~ 232 (250)
T 3lp5_A 212 TAHSDLPQ-N--KQIVSLIRQYLL 232 (250)
T ss_dssp BSSCCHHH-H--HHHHHHHHHHTS
T ss_pred Cchhcchh-C--HHHHHHHHHHHh
Confidence 67977532 2 255556677765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-07 Score=96.11 Aligned_cols=250 Identities=11% Similarity=0.056 Sum_probs=142.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
..+++|+|||+ |.++.... ..|+++|+++++..... .......+++|+|||+ |++..... ..
T Consensus 47 ~~~~~~~~~g~-l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~-----------~~ 109 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLDVFE----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGD-----------FK 109 (333)
T ss_dssp EEEEEECTTSC-EEEEETTT----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTT-----------SS
T ss_pred ccCcEECCCCC-EEEEECCC----CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-EEEEeCCC-----------CC
Confidence 57899999998 44433222 37999999988754322 1222346889999997 44443211 01
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecC---CCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNN---TQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~---~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
....|++++..+.... .+............+.++|||+.++ ..... .....||.++.+++ ....+
T Consensus 110 ~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~---------~~~~~ 177 (333)
T 2dg1_A 110 STGGIFAATENGDNLQ--DIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFR---------TVTPI 177 (333)
T ss_dssp SCCEEEEECTTSCSCE--EEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSC---------CEEEE
T ss_pred CCceEEEEeCCCCEEE--EEEccCccCCcccceEECCCCCEEE-EeccccccCCCceEEEEeCCCC---------EEEEe
Confidence 1247888887765422 1222111122456789999997544 33221 11257999987762 12223
Q ss_pred eccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceE----ee-cCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 300 IPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT----LI-PEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 300 ~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~----l~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
......... .|++||+.+|+.... ...|+++++++... .+.. +. ..........+.+..++.+++....+
T Consensus 178 ~~~~~~~~~i~~~~dg~~l~v~~~~---~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~ 253 (333)
T 2dg1_A 178 IQNISVANGIALSTDEKVLWVTETT---ANRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ 253 (333)
T ss_dssp EEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSS-SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT
T ss_pred ecCCCcccceEECCCCCEEEEEeCC---CCeEEEEEecCCCc-CcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC
Confidence 222222222 389999988876543 34699999853210 1111 11 11111234455555556676665433
Q ss_pred CceeEEEEECCCCceeeeeCCCCc------eEEeeccCcccceEEEEEecC--CCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLG------QITHISGRRKYNEVFYGFTSF--LQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g------~v~~~~~~~d~~~l~~~~ss~--~~P~~~~~~d~ 429 (734)
..|++||. +|+.++.+..+.. .+.++.+++|++.+++..+.. .....+|.+++
T Consensus 254 --~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 254 --GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp --TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred --CEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 47999998 6776666655422 345666678877888766543 23467888887
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-07 Score=94.69 Aligned_cols=225 Identities=11% Similarity=0.076 Sum_probs=136.2
Q ss_pred EEEeeEEeCCCCc-EEEEEEeCCCCceEEEEEEEC-CCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 142 TALKLYAFSDNGK-HFAYCLSKSGSDWNTLHIKDV-DTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 142 ~~~~~~~~SPDG~-~la~~~~~~g~~~~~l~v~dl-~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
..+..++|||||+ +|+.... . ..|++||+ .+++...... ....+..+.|+| ++.|+....+.
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~-d----g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~-------- 122 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTV-Q----GEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDG-------- 122 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEET-T----SCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTS--------
T ss_pred CceEEEEECCCCCcEEEEEcC-C----CeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCC--------
Confidence 3478899999999 8876653 2 36999999 8887533322 333346899999 88777665432
Q ss_pred cccccCCcEEEEEECCC---------CCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC-CCC
Q psy4818 218 ETTAHMGQKIYYHVLGT---------EQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS-LPD 287 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t---------~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~-~~~ 287 (734)
.|++|++.+ ...... +. .......+.|+|++ ++.. . ....|++||+.+ +..
T Consensus 123 --------~i~iwd~~~~~~~~~~~~~~~~~~--~~---~~~~v~~~~~~~~~--l~~~-~---~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 123 --------LIEVIDPRNYGDGVIAVKNLNSNN--TK---VKNKIFTMDTNSSR--LIVG-M---NNSQVQWFRLPLCEDD 183 (342)
T ss_dssp --------EEEEECHHHHTTBCEEEEESCSSS--SS---SCCCEEEEEECSSE--EEEE-E---STTEEEEEESSCCTTC
T ss_pred --------eEEEEcccccccccccccCCeeeE--Ee---eCCceEEEEecCCc--EEEE-e---CCCeEEEEECCccccc
Confidence 688888765 322111 11 23356678999998 4432 2 225899999986 321
Q ss_pred CcccCCCCceeeeccc-cceEE-EEEe-cCCeEEEEeCCCCCCceEEEEecCCC--C--CCCceEeecCCC-------Cc
Q psy4818 288 GKISGKFPLKTVIPGM-DHHHE-IIAN-NGPELIVKTTKNAPKGKVVTINLNNP--C--EKNWKTLIPEDE-------NR 353 (734)
Q Consensus 288 ~~l~~~~~~~~l~~~~-~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~--~--~~~~~~l~~~~~-------~~ 353 (734)
......... ..... .|+| +++.++..+. +..+.+++++.. . ......+..+.. ..
T Consensus 184 -------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 184 -------NGTIEESGLKYQIRDVALLPKEQEGYACSSI----DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp -------CCEEEECSCSSCEEEEEECSGGGCEEEEEET----TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred -------cceeeecCCCCceeEEEECCCCCCEEEEEec----CCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 111111111 22223 3889 9887776554 245777777654 0 011233333321 12
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEE
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~ 414 (734)
.+..+.+..++.++++...+ ..|++||+.+++.+..+... .+.+..+. +++..++..
T Consensus 253 ~i~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 253 PVNSIEFSPRHKFLYTAGSD--GIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp CEEEEEECTTTCCEEEEETT--SCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred eEEEEEEcCCCCEEEEecCC--ceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEE
Confidence 45556555545666666555 47999999889887788766 67777776 777655543
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.3e-10 Score=110.50 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..|.||++||..+... .|.. +...|.+ +|.|+++|.||.|.... ...+|+.+.++.+++.-.+
T Consensus 11 ~~~~~lv~lhg~g~~~~--~~~~-~~~~L~~-~~~vi~~Dl~GhG~S~~------------~~~~~~~~~~~~~~~~l~~ 74 (242)
T 2k2q_B 11 SEKTQLICFPFAGGYSA--SFRP-LHAFLQG-ECEMLAAEPPGHGTNQT------------SAIEDLEELTDLYKQELNL 74 (242)
T ss_dssp TCCCEEESSCCCCHHHH--HHHH-HHHHHCC-SCCCEEEECCSSCCSCC------------CTTTHHHHHHHHTTTTCCC
T ss_pred CCCceEEEECCCCCCHH--HHHH-HHHhCCC-CeEEEEEeCCCCCCCCC------------CCcCCHHHHHHHHHHHHHh
Confidence 45678899999765543 3443 3455654 89999999999664321 1245777777776554222
Q ss_pred -CCCcEEEEEcChHHHHHHHHHhc------CCCc
Q psy4818 566 -KPKYITIMGGSNGGLLVGACLNQ------RPEL 592 (734)
Q Consensus 566 -d~~ri~i~G~S~GG~~~~~~~~~------~p~~ 592 (734)
..+++.++|||+||.++..++.+ +|+.
T Consensus 75 ~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~ 108 (242)
T 2k2q_B 75 RPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQA 108 (242)
T ss_dssp CCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCS
T ss_pred hcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCE
Confidence 23689999999999999999875 6775
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=7.7e-10 Score=122.04 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=87.2
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCc---CCccccHHHHHHHHhcCeEEEEEecccCC-CCCchhhhccccccCCC
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVS---VLPTFSISRCMFLRHFNGIYAIPNIRGGG-ELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l~~~G~~v~~~~~rG~~-~~g~~~~~~~~~~~~~~ 547 (734)
+.+.++.|+.. .++.|+||++|||.... ....+.. ..+..+.|++|+.+|||.+. ||+..... ....+..
T Consensus 93 l~lnv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~--~~la~~~~~vvv~~nYRlg~~Gf~~~~~~--~~~~~n~ 166 (529)
T 1p0i_A 93 LYLNVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDG--KFLARVERVIVVSMNYRVGALGFLALPGN--PEAPGNM 166 (529)
T ss_dssp CEEEEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCT--HHHHHHHCCEEEEECCCCHHHHHCCCTTC--TTSCSCH
T ss_pred CeEEEeeCCCC--CCCCeEEEEECCCccccCCCCccccCh--HHHhccCCeEEEEecccccccccccCCCC--CCCcCcc
Confidence 55667788753 26789999999985332 2222433 23334369999999999531 22211000 0112233
Q ss_pred chhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcch
Q psy4818 548 CFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGALD 604 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~d 604 (734)
.+.|+.++++|+.++ --.||+||.|+|+|+||.+++.++... +.+|+++|+.+|...
T Consensus 167 gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 167 GLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 478999999999875 237999999999999999999988753 458999999999754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.4e-08 Score=104.21 Aligned_cols=249 Identities=10% Similarity=0.083 Sum_probs=137.1
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc-----------cccc-ccc------------cccCeeEEEc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD-----------YPEV-LKN------------VKFPSISWTH 197 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~-----------~~~~-~~~------------~~~~~~~wSp 197 (734)
..+..++|||||++||..... ..|++||+.+++. +... ... ..+..+.|+|
T Consensus 29 ~~V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred CcEEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 347899999999999976532 3799999987762 1111 111 2246899999
Q ss_pred CC--cEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC-------------------------------------
Q psy4818 198 DH--KGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK------------------------------------- 238 (734)
Q Consensus 198 Dg--~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~------------------------------------- 238 (734)
++ ..|+....+. .|.+|++.+....
T Consensus 104 ~~~~~~l~s~s~d~----------------~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (447)
T 3dw8_B 104 QKNAAQFLLSTNDK----------------TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEAS 167 (447)
T ss_dssp CCSSSEEEEEECSS----------------CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEE
T ss_pred CCCcceEEEeCCCC----------------eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeecc
Confidence 98 6676665432 4555555431100
Q ss_pred CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC-CCCceeeeccccceEEE-EEecC-C
Q psy4818 239 DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG-KFPLKTVIPGMDHHHEI-IANNG-P 315 (734)
Q Consensus 239 ~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~l~~~~~~~~~~-~s~dg-~ 315 (734)
...++.. .+...+..++|+|||++|+.. ....|.+||+.+. ...+.. ......+.......... |+|+| +
T Consensus 168 ~~~~~~~-~h~~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 168 PRRIFAN-AHTYHINSISINSDYETYLSA-----DDLRINLWHLEIT-DRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp EEEEECS-CCSSCCCEEEECTTSSEEEEE-----CSSEEEEEETTEE-EEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred ceEEecc-CCCcceEEEEEcCCCCEEEEe-----CCCeEEEEECCCC-CceeeeeecccccccccCcceEEEEECCCCCc
Confidence 0001111 223345678999999998742 1368999999841 100000 00000011122223333 99998 5
Q ss_pred eEEEEeCCCCCCceEEEEecCCCCC-CCceEeecCCCC-----------ceeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 316 ELIVKTTKNAPKGKVVTINLNNPCE-KNWKTLIPEDEN-----------RTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 316 ~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
.|+..+. +..|..+|+.++.. ......+..... ..+..+.+..++.++++... ..|.+||+
T Consensus 241 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~v~iwd~ 313 (447)
T 3dw8_B 241 TFVYSSS----KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY---LSVKVWDL 313 (447)
T ss_dssp EEEEEET----TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES---SEEEEEET
T ss_pred EEEEEeC----CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC---CeEEEEeC
Confidence 5555443 24599999877541 001233333212 14556666555566655544 57999999
Q ss_pred CC-CceeeeeCCCCce---------------EEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 384 NT-GKRLHSFPLDLGQ---------------ITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 384 ~~-g~~~~~l~~~~g~---------------v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+ ++.+..+...... +..+.++++++.+ ++.+. -..++.||+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~---dg~v~iwd~ 371 (447)
T 3dw8_B 314 NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSY---NNFFRMFDR 371 (447)
T ss_dssp TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECS---TTEEEEEET
T ss_pred CCCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEecc---CCEEEEEEc
Confidence 76 6655555433211 1126778888766 34333 257999999
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-07 Score=98.72 Aligned_cols=247 Identities=9% Similarity=0.025 Sum_probs=142.3
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC------cccc-cccccccCeeEEEcC----C---cEEEEEE
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK------DYPE-VLKNVKFPSISWTHD----H---KGFFYNQ 206 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~------~~~~-~~~~~~~~~~~wSpD----g---~~l~y~~ 206 (734)
...+..++|+| ++|+.... . ..|++||+.+++ .+.. ......+..+.|+|| | +.|+...
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSG-D----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SSCEEEEEECS--SEEEEEET-T----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hcCeEEEEecC--CeEEEEcC-C----CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 34578899999 66665543 2 479999999887 2221 112223468899999 8 8777766
Q ss_pred EecCCCCCCCCcccccCCcEEEEEECCCCCCCCee-EEecCCC-----CeeEEEEEEe----cCCcE-EEEEEecCCCCc
Q psy4818 207 YCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIP-VVEFPNG-----RSLGLHSEVT----DCGRY-LLVSTSNNTQGS 275 (734)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~-v~~~~~~-----~~~~~~~~~S----pDG~~-l~~~~~~~~~~~ 275 (734)
.+. .|++|++.+....... +...... ...+..+.|+ |||++ |+.... ..
T Consensus 89 ~dg----------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~----dg 148 (397)
T 1sq9_A 89 FSG----------------DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV----KG 148 (397)
T ss_dssp TTS----------------CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET----TS
T ss_pred CCC----------------CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC----CC
Confidence 432 5777887765421111 2222222 2456789999 99999 664332 25
Q ss_pred eEEEEeCCC------CCCCcccCCCCceeeec-------cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCC
Q psy4818 276 DLHYFDLHS------LPDGKISGKFPLKTVIP-------GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEK 341 (734)
Q Consensus 276 ~i~~~d~~~------~~~~~l~~~~~~~~l~~-------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 341 (734)
.|++||+.+ +..-.+. +...+.. ....... .|+|++ .++. ... +..|..+|+.++.
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~---dg~i~i~d~~~~~-- 218 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWS---PTLELQGTVESPMTPSQFATSVDISERG-LIAT-GFN---NGTVQISELSTLR-- 218 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCC---CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-ECT---TSEEEEEETTTTE--
T ss_pred cEEEEeCCccccccccceeecc---CcceeeeeeccccCCCCCceEEEECCCc-eEEE-EeC---CCcEEEEECCCCc--
Confidence 788888876 2211100 0002211 1122223 389998 4443 332 3569999997654
Q ss_pred CceEeecC---C--CCceeEEEEEeeCCEEEEEEEeC-CceeEEEEECCCCceeeeeCC-------------CCceEEee
Q psy4818 342 NWKTLIPE---D--ENRTLDVVAAVANNKLIVHYIQN-VRSVMDLHDLNTGKRLHSFPL-------------DLGQITHI 402 (734)
Q Consensus 342 ~~~~l~~~---~--~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~dl~~g~~~~~l~~-------------~~g~v~~~ 402 (734)
....+.. . ....+..+.+..++.++++...+ ....|++||+.+++.+..+.. ..+.+..+
T Consensus 219 -~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 219 -PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp -EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred -eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence 2222322 1 02344555554434444444443 335899999988888777776 55667788
Q ss_pred ccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 403 SGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 403 ~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++++++.++.. +. -..++.||+
T Consensus 298 ~~~~~~~~l~~~-~~---dg~i~iwd~ 320 (397)
T 1sq9_A 298 SFNDSGETLCSA-GW---DGKLRFWDV 320 (397)
T ss_dssp EECSSSSEEEEE-ET---TSEEEEEET
T ss_pred EECCCCCEEEEE-eC---CCeEEEEEc
Confidence 889988765543 32 247999999
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-08 Score=105.54 Aligned_cols=244 Identities=11% Similarity=0.103 Sum_probs=140.8
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..+.|||||++|+-... ...|++||+.+++.+... .....+...+|+|||+.|+....+.
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~-----D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~---------- 130 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQ-----DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS---------- 130 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEET-----TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSS----------
T ss_pred ccEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCC----------
Confidence 345789999999999885543 247999999998754322 1222346789999999887665432
Q ss_pred cccCCcEEEEEECCCCCCCC---eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 220 TAHMGQKIYYHVLGTEQDKD---IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~---~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
.+.++++.+....+ ........+......+.|+|++...+++.+ ....|.+||+.++.. .
T Consensus 131 ------~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s---~D~~i~~wd~~~~~~--------~ 193 (380)
T 3iz6_a 131 ------ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS---GDQTCVLWDVTTGQR--------I 193 (380)
T ss_dssp ------CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC---TTSCEEEECTTTCCE--------E
T ss_pred ------cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC---CCCcEEEEEcCCCcE--------E
Confidence 46666765432110 000011122334456788998665444443 236799999987321 1
Q ss_pred eee-----eccccceEEE-EEe-cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEE
Q psy4818 297 KTV-----IPGMDHHHEI-IAN-NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVH 369 (734)
Q Consensus 297 ~~l-----~~~~~~~~~~-~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 369 (734)
..+ .......... |.+ +++.|+-.+. +..|..||+..... ....+..+. ..+..+.+..++..+++
T Consensus 194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~----D~~v~~wd~~~~~~-~~~~~~~h~--~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSC----DTTVRLWDLRITSR-AVRTYHGHE--GDINSVKFFPDGQRFGT 266 (380)
T ss_dssp EEECCCSSSSCCSCEEEEEECSSSCCEEEEEET----TSCEEEEETTTTCC-CCEEECCCS--SCCCEEEECTTSSEEEE
T ss_pred EEeecccCCCCccCeEEEEeecCCCCEEEEEEC----CCeEEEEECCCCCc-ceEEECCcC--CCeEEEEEecCCCeEEE
Confidence 111 0111112222 544 5554443332 34588999864321 123333332 33455555554666777
Q ss_pred EEeCCceeEEEEECCCCceeeeeCCC-------CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 370 YIQNVRSVMDLHDLNTGKRLHSFPLD-------LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 370 ~~~~~~~~l~~~dl~~g~~~~~l~~~-------~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+ ..+.+||+.+|+.+..+... ...+..+.+++++..++...+ -..++.||+
T Consensus 267 ~s~D--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i~vwd~ 327 (380)
T 3iz6_a 267 GSDD--GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS----NGDCYVWDT 327 (380)
T ss_dssp ECSS--SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT----TSCEEEEET
T ss_pred EcCC--CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC----CCCEEEEEC
Confidence 7666 47999999888876655432 122556778888876654432 246999998
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.8e-09 Score=105.92 Aligned_cols=209 Identities=8% Similarity=-0.112 Sum_probs=114.7
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHH-HHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA-AEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~ 563 (734)
.+..|.||++||.........|.. +...|. .||.|+.+|+||.|... .....++++.+. ++.+.+.
T Consensus 78 ~~~~~~lv~lhG~~~~~~~~~~~~-~~~~L~-~~~~v~~~d~~G~G~~~----------~~~~~~~~~~~~~~~~l~~~- 144 (319)
T 3lcr_A 78 GQLGPQLILVCPTVMTTGPQVYSR-LAEELD-AGRRVSALVPPGFHGGQ----------ALPATLTVLVRSLADVVQAE- 144 (319)
T ss_dssp CCSSCEEEEECCSSTTCSGGGGHH-HHHHHC-TTSEEEEEECTTSSTTC----------CEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEECCCCcCCCHHHHHH-HHHHhC-CCceEEEeeCCCCCCCC----------CCCCCHHHHHHHHHHHHHHh-
Confidence 356788999999422222233443 455664 69999999999955311 111234444433 2233222
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcC---CCceeEEEEcCCcchhcc--ccc-c--ccCccccc---ccCCCC-CHHHHH
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQR---PELYGAALILVGALDMLR--FNK-F--TIAYYSES---EFGSPN-NKTHFH 631 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~---p~~~~a~v~~~~~~d~~~--~~~-~--~~~~~~~~---~~g~~~-~~~~~~ 631 (734)
...+++.|+|||+||.++..++.+. |+.++++|+..+...... ... . ........ .+.... ....+.
T Consensus 145 -~~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 223 (319)
T 3lcr_A 145 -VADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRIT 223 (319)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred -cCCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHH
Confidence 1235799999999999999998876 777888887665432111 000 0 00000000 011111 011111
Q ss_pred HH----HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc-
Q psy4818 632 NL----LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP- 706 (734)
Q Consensus 632 ~~----~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~- 706 (734)
.+ ....-+ .. . .+++| +|+++|.. +.+++.....+.+.+.. ...++++++ +|.....
T Consensus 224 ~~~~~~~~~~~~-~~-~---~i~~P-vLli~g~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~g-~H~~~~~~ 285 (319)
T 3lcr_A 224 AQVWCLELLRGW-RP-E---GLTAP-TLYVRPAQ-PLVEQEKPEWRGDVLAA----------MGQVVEAPG-DHFTIIEG 285 (319)
T ss_dssp HHHHHHHHTTTC-CC-C---CCSSC-EEEEEESS-CSSSCCCTHHHHHHHHT----------CSEEEEESS-CTTGGGST
T ss_pred HHHHHHHHHhcC-CC-C---CcCCC-EEEEEeCC-CCCCcccchhhhhcCCC----------CceEEEeCC-CcHHhhCc
Confidence 11 111111 11 2 27788 99999986 67777777777766643 246677776 6654432
Q ss_pred hHHhHHHHHHHHHHHHHHcC
Q psy4818 707 LMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 707 ~~~~~~~~~~~~~fl~~~l~ 726 (734)
.. ..+..+.+.+||.+...
T Consensus 286 ~~-~~~va~~i~~fL~~~~~ 304 (319)
T 3lcr_A 286 EH-VASTAHIVGDWLREAHA 304 (319)
T ss_dssp TT-HHHHHHHHHHHHHHHHC
T ss_pred cc-HHHHHHHHHHHHHhccc
Confidence 22 24667778899988653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-07 Score=97.35 Aligned_cols=249 Identities=10% Similarity=0.005 Sum_probs=132.2
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC-------cccc-cccccccCeeEEEcCCcEEEEEEEecCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK-------DYPE-VLKNVKFPSISWTHDHKGFFYNQYCDIN 211 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~-------~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~ 211 (734)
+...+..++|||||++||-... . ..|++||+.++. .+.. ......+..++|+|||+.|+....+.
T Consensus 57 h~~~v~~v~~sp~~~~las~s~-D----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~-- 129 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSF-D----STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK-- 129 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEET-T----SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS--
T ss_pred ccCCEEEEEECCCCCEEEEEeC-C----CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC--
Confidence 3345889999999999886553 2 369999986432 1111 11112246789999999888766433
Q ss_pred CCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 212 GTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
.|++|++.........+.....+...+..+.|+|||++|+-... ...|.+||+.++..
T Consensus 130 --------------~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~iW~~~~~~~---- 187 (330)
T 2hes_X 130 --------------SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY----DDTVRIWKDYDDDW---- 187 (330)
T ss_dssp --------------CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET----TSCEEEEEEETTEE----
T ss_pred --------------EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCCe----
Confidence 68888885432222222222233445778999999998874332 25788888765210
Q ss_pred CCCCceeeeccccceEEE-EEecC--CeEEEEeCCCCCCceEEEEecCCCCCC---Cc--eEeecCCCCceeEEEEEeeC
Q psy4818 292 GKFPLKTVIPGMDHHHEI-IANNG--PELIVKTTKNAPKGKVVTINLNNPCEK---NW--KTLIPEDENRTLDVVAAVAN 363 (734)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~-~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~--~~l~~~~~~~~~~~~~~~~~ 363 (734)
.....+..+....... |+|++ ..|+-.+. +..|.+|++.++... .+ ...++......+..+.+.+
T Consensus 188 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~- 260 (330)
T 2hes_X 188 --ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF- 260 (330)
T ss_dssp --EEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-
T ss_pred --eEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-
Confidence 0112222222233333 88884 34443332 234667776543110 01 1122221233455555555
Q ss_pred CEEEEEEEeCCceeEEEEECCCCce--eeee-CCCCc-eEEeeccCcc-cceEEEEEecCCCCceEEEEeC
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLNTGKR--LHSF-PLDLG-QITHISGRRK-YNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~~g~~--~~~l-~~~~g-~v~~~~~~~d-~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.++++...+ ..|.+|+..+++. .... ..... .+..+.+++. +..++++.+.. ..+.++|+
T Consensus 261 ~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D---g~v~~W~~ 326 (330)
T 2hes_X 261 NGLIASVGAD--GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD---GIVNFWSL 326 (330)
T ss_dssp TSCEEEEETT--SCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT---SEEEEEEC
T ss_pred CCEEEEEeCC--CEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC---CcEEEEEe
Confidence 3456666655 4678888866642 2222 22333 5767777773 33444554443 46888887
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=6.1e-08 Score=104.80 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=139.7
Q ss_pred CcEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCccccc---ccccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 140 GTTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---LKNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 140 ~~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
+...|..++||| ||++|+-+ ... ..|.+||++++...... ........+.|+|||+.|+....+.
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~-s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg------ 231 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYAS-SME----GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG------ 231 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEE-CSS----SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS------
T ss_pred CCCCEEEEEEeCCCCCEEEEE-eCC----CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC------
Confidence 345588999999 67777633 323 36999999887532211 1122235789999999887655322
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.|+++++.+.... ....+...+..+.|+|+++.++++.+.. ..|.+||+.++... ..
T Consensus 232 ----------~i~~wd~~~~~~~-----~~~~h~~~v~~v~~~p~~~~~~~s~s~d---~~v~iwd~~~~~~~-----~~ 288 (435)
T 4e54_B 232 ----------NVILLNMDGKELW-----NLRMHKKKVTHVALNPCCDWFLATASVD---QTVKIWDLRQVRGK-----AS 288 (435)
T ss_dssp ----------BEEEEESSSCBCC-----CSBCCSSCEEEEEECTTCSSEEEEEETT---SBCCEEETTTCCSS-----SC
T ss_pred ----------cEeeeccCcceeE-----EEecccceEEeeeecCCCceEEEEecCc---ceeeEEeccccccc-----ce
Confidence 6888888654321 1122334567899999999777665432 46888998773211 11
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCC-----ceeEEEEEeeCCEEEEE
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDEN-----RTLDVVAAVANNKLIVH 369 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~l~~~ 369 (734)
.............. |+|||+.|+..+. +..|.+||+.++.. ...+..+... ..+......+++.+++.
T Consensus 289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 289 FLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp CSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred EEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEE
Confidence 11111122222333 8999998775544 34588899876541 2233322211 11111222222333333
Q ss_pred EEeCC---------ceeEEEEECCCCceeeeeCCC-CceEEee-ccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 370 YIQNV---------RSVMDLHDLNTGKRLHSFPLD-LGQITHI-SGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 370 ~~~~~---------~~~l~~~dl~~g~~~~~l~~~-~g~v~~~-~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...++ ...|++||..+|+.+..+..+ ...|.++ .++|++..|+ +.+ . ..+.+||+
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~la-sg~-d---~~i~iW~~ 428 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA-SAM-G---YHILIWSQ 428 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEE-EEC-S---SEEEECCC
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEE-EEc-C---CcEEEEEC
Confidence 22221 135899999999887776544 3344444 4678886554 332 2 36899998
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-08 Score=106.36 Aligned_cols=206 Identities=5% Similarity=-0.000 Sum_probs=121.0
Q ss_pred EeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCcccc---cccccccCeeEEEc-CCcEEEEEEEecCCCCCCCCc
Q psy4818 144 LKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE---VLKNVKFPSISWTH-DHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 144 ~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~---~~~~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~~~~ 218 (734)
+..++||| +++.||.... + ..|+|||+.+++.... ......+..++|+| |++.|+-...|.
T Consensus 122 V~~l~~~P~~~~~lasGs~-d----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~--------- 187 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSK-G----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG--------- 187 (435)
T ss_dssp EEEEEECSSCTTCEEEEET-T----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS---------
T ss_pred EEEEEEeCCCCCEEEEEeC-C----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC---------
Confidence 77899999 5667775543 3 3699999988764221 11222357899998 677666544332
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|.+|++.+... ..+.........+..+.|+|||++|+... ....|++||+.+.. ...
T Consensus 188 -------~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----~dg~i~~wd~~~~~---------~~~ 245 (435)
T 4e54_B 188 -------TTRLQDFKGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGD----NVGNVILLNMDGKE---------LWN 245 (435)
T ss_dssp -------CEEEEETTSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEEC----SSSBEEEEESSSCB---------CCC
T ss_pred -------EEEEeeccCCce--eEEeccCCCCccEEEEEECCCCCEEEEEe----CCCcEeeeccCcce---------eEE
Confidence 588888865421 12222222223455789999999987532 23579999987621 122
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec-CCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP-EDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
+.......... |+|+++.+++.+..+ ..|.+||+.+.... ..+.. ......+..+.+..++..+++...+ .
T Consensus 246 ~~~h~~~v~~v~~~p~~~~~~~s~s~d---~~v~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D--~ 318 (435)
T 4e54_B 246 LRMHKKKVTHVALNPCCDWFLATASVD---QTVKIWDLRQVRGK--ASFLYSLPHRHPVNAACFSPDGARLLTTDQK--S 318 (435)
T ss_dssp SBCCSSCEEEEEECTTCSSEEEEEETT---SBCCEEETTTCCSS--SCCSBCCBCSSCEEECCBCTTSSEEEEEESS--S
T ss_pred EecccceEEeeeecCCCceEEEEecCc---ceeeEEeccccccc--ceEEEeeeccccccceeECCCCCeeEEEcCC--C
Confidence 22222333333 889988776655433 35778888764321 11111 1112344555454445666666666 4
Q ss_pred eEEEEECCCCceeeee
Q psy4818 377 VMDLHDLNTGKRLHSF 392 (734)
Q Consensus 377 ~l~~~dl~~g~~~~~l 392 (734)
.|++||+.+++....+
T Consensus 319 ~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 319 EIRVYSASQWDCPLGL 334 (435)
T ss_dssp CEEEEESSSSSSEEEE
T ss_pred EEEEEECCCCccceEE
Confidence 7899999888755444
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=111.58 Aligned_cols=122 Identities=9% Similarity=-0.053 Sum_probs=85.0
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
++..+...++.|+.+. .+..+.||++||..+.... .|...+...|.++||.|+.+|+||.|.-. . ..
T Consensus 12 ~~~~l~~~i~~p~~~~-~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~---~--------~~ 78 (317)
T 1tca_A 12 PKSVLDAGLTCQGASP-SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLND---T--------QV 78 (317)
T ss_dssp CHHHHHHTEEETTBCT-TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSC---H--------HH
T ss_pred CHHHHhheeeCCCCCC-CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCc---H--------HH
Confidence 3445666677787653 3445678999998665432 13323457777789999999999843211 0 11
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCC---CceeEEEEcCCcch
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP---ELYGAALILVGALD 604 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~~~a~v~~~~~~d 604 (734)
..+++.+.++++.++. ..+++.++|||+||+++..++.+.| +.++++|+.+|..+
T Consensus 79 ~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 79 NTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp HHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 2467778888877652 3368999999999999999887765 78899999887643
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=115.11 Aligned_cols=114 Identities=14% Similarity=0.060 Sum_probs=79.2
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHh-cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH-FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
+...|+||++||..+.. ...|...+...|.+ .||.|+++|+||.|... +.... ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~--~~~~~--~~~~~~~~dl~~~i~~l~~~~ 141 (432)
T 1gpl_A 67 NLNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQ--YSQAS--QNIRVVGAEVAYLVQVLSTSL 141 (432)
T ss_dssp CTTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSC--HHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCcc--chhhH--hhHHHHHHHHHHHHHHHHHhc
Confidence 34678999999976554 22344423344443 69999999999965432 11110 111122467778888887553
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
-++.+++.++|||+||.+++.++.++|++++++++..|..
T Consensus 142 g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 142 NYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 3567899999999999999999999999888988877654
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-10 Score=123.34 Aligned_cols=132 Identities=21% Similarity=0.154 Sum_probs=87.5
Q ss_pred EEcCCCcEEeEEEEEecccc-CCCCCcEEEEecCCCCCcCCc---------cccHHHHHHHHhcCeEEEEEecccCC-CC
Q psy4818 464 FRSKDGTRVPMYIIHRVGAL-RNRRNPVIIYGYGGYGVSVLP---------TFSISRCMFLRHFNGIYAIPNIRGGG-EL 532 (734)
Q Consensus 464 ~~s~dg~~i~~~~~~p~~~~-~~~~~P~vv~~hGg~~~~~~~---------~~~~~~~~~l~~~G~~v~~~~~rG~~-~~ 532 (734)
+.+.|. +.+.++.|.... .+++.|+||++|||....... .+.. ..+..+.|++|+.+|||.+. +|
T Consensus 75 ~~sedc--l~lnv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~--~~la~~~~vvvV~~nYRLg~~Gf 150 (579)
T 2bce_A 75 YGNEDC--LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDG--EEIATRGNVIVVTFNYRVGPLGF 150 (579)
T ss_dssp ESCSCC--CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCC--HHHHHHHTCEEEEECCCCHHHHH
T ss_pred CCCCCC--CEEEEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccCh--HHHhcCCCEEEEEeCCccccccC
Confidence 334554 566777887642 346789999999985322111 1111 23334458999999999532 22
Q ss_pred CchhhhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCc
Q psy4818 533 GEDWHNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGA 602 (734)
Q Consensus 533 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~ 602 (734)
..... ....+...+.|+.+|++|+.++- -.||+||.|+|+|+||.++..++.. ...+|+++|+.+|.
T Consensus 151 l~~~~---~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 151 LSTGD---SNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp CCCSS---TTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CcCCC---CCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 21100 01111124789999999998752 3699999999999999999988764 35699999998874
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=120.92 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=89.1
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCc---CCccccHHHHHHHHhcCeEEEEEecccCC-CCCchhhhccc
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVS---VLPTFSISRCMFLRHFNGIYAIPNIRGGG-ELGEDWHNAGR 541 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l~~~G~~v~~~~~rG~~-~~g~~~~~~~~ 541 (734)
+.|. +.+.++.|+.. .++.|+||++|||.... ....+.. ..+..+.|++|+.+|||.+. ||...- ...
T Consensus 91 sedc--l~lnv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~--~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~ 162 (537)
T 1ea5_A 91 SEDC--LYLNIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNG--KYLAYTEEVVLVSLSYRVGAFGFLALH--GSQ 162 (537)
T ss_dssp CSCC--CEEEEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCT--HHHHHHHTCEEEECCCCCHHHHHCCCT--TCS
T ss_pred CCcC--CeEEEeccCCC--CCCCeEEEEECCCcccCCCCCCCccCh--HHHHhcCCEEEEEeccCccccccccCC--CCC
Confidence 4455 45566778753 36789999999985332 2222443 23343679999999999531 121100 000
Q ss_pred cccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcch
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGALD 604 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~d 604 (734)
...+...+.|+.++++|+.++- -.||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|...
T Consensus 163 ~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 163 EAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred CCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 1122335889999999998762 2699999999999999999998875 2458999999998654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-06 Score=89.72 Aligned_cols=245 Identities=11% Similarity=0.024 Sum_probs=137.3
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC--Ccccccc-cccccCeeEEEcC--CcEEEEEEEecCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG--KDYPEVL-KNVKFPSISWTHD--HKGFFYNQYCDINGTAD 215 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g--~~~~~~~-~~~~~~~~~wSpD--g~~l~y~~~~~~~~~~~ 215 (734)
...+..++|||||++||-.... ..|++||++++ +.+.... ....+..++|+|+ |+.|+-...|.
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~------ 77 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------ 77 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT------
T ss_pred cCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC------
Confidence 3457889999999999865532 36999999754 2222111 1223367899874 77776665432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC--CcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC--GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.+|++.++....+..+.. +...+..+.|+|+ |++|+.... ...|.+||+.++..
T Consensus 78 ----------~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~----d~~v~~wd~~~~~~------ 135 (297)
T 2pm7_B 78 ----------KVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASS----DGKVSVVEFKENGT------ 135 (297)
T ss_dssp ----------EEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEET----TSEEEEEEBCSSSC------
T ss_pred ----------EEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEEC----CCcEEEEEecCCCc------
Confidence 78889987654333333332 2335678999998 888774332 26789999876211
Q ss_pred CCceeeeccccceEEE-EEec-------------CCeEEEEeCCCCCCceEEEEecCCCCCC-CceEeecCCCCceeEEE
Q psy4818 294 FPLKTVIPGMDHHHEI-IANN-------------GPELIVKTTKNAPKGKVVTINLNNPCEK-NWKTLIPEDENRTLDVV 358 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~d-------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~ 358 (734)
.....+.......... |+|+ ++.|+..+. +..|.++|+.++... .....+... ...+..+
T Consensus 136 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v 210 (297)
T 2pm7_B 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDV 210 (297)
T ss_dssp BCCEEEECCSSCEEEEEECCCC------------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCC-SSCEEEE
T ss_pred eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCC-CCceEEE
Confidence 0111122222222222 7776 344443332 235777887654310 011122222 3445566
Q ss_pred EEeeC---CEEEEEEEeCCceeEEEEECCCCc--e-eeeeC--CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 359 AAVAN---NKLIVHYIQNVRSVMDLHDLNTGK--R-LHSFP--LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 359 ~~~~~---~~l~~~~~~~~~~~l~~~dl~~g~--~-~~~l~--~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..+ +.++++...+ ..+.+||+.++. . ...+. ...+.+..++++|+++.++.... . ..+.+++.
T Consensus 211 ~~sp~~~~~~~las~s~D--~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-D---~~v~lw~~ 283 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQD--RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-D---NKVTLWKE 283 (297)
T ss_dssp EECCCCSSSEEEEEEETT--SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-T---SCEEEEEE
T ss_pred EECCCCCCceEEEEEECC--CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-C---CcEEEEEE
Confidence 66543 3677777766 468888885542 1 12331 22456778888999876654432 2 24666665
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-07 Score=101.64 Aligned_cols=246 Identities=9% Similarity=0.038 Sum_probs=142.6
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC----------CCccc-ccccccccCeeEEEcCCcEEEEEEEecCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT----------GKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDING 212 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~----------g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~ 212 (734)
+..++|+|++..++++....| .|++||+.+ .+.+. ..........++|+|+++.++++...
T Consensus 131 v~~l~~~p~~~~~lat~~~dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---- 202 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSS----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD---- 202 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSS----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT----
T ss_pred EEEEEECCCCCcEEEEECCCC----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC----
Confidence 567999998555555544444 599999876 22221 11122234689999999844444421
Q ss_pred CCCCCcccccCCcEEEEEECCCCCCCC-----eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC
Q psy4818 213 TADGTETTAHMGQKIYYHVLGTEQDKD-----IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 287 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~l~t~~~~~-----~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~ 287 (734)
...|.+|++.+..... ...+. .+...+..+.|+|++..++++... ...|++||+.++..
T Consensus 203 -----------dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~l~s~~~---dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 203 -----------DHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHESLFGSVAD---DQKLMIWDTRNNNT 266 (430)
T ss_dssp -----------TSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCSCS
T ss_pred -----------CCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCCCCEEEEEeC---CCeEEEEECCCCCC
Confidence 1268888887643211 11222 233356789999965555544432 26899999987321
Q ss_pred CcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee-CCE
Q psy4818 288 GKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA-NNK 365 (734)
Q Consensus 288 ~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 365 (734)
. .....+.......... |+|+++.+++.+.. +..|.++|+.+... ....+..+. ..+..+.+.. ++.
T Consensus 267 ~-----~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~---dg~v~vwd~~~~~~-~~~~~~~h~--~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 267 S-----KPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWDLRNLKL-KLHSFESHK--DEIFQVQWSPHNET 335 (430)
T ss_dssp S-----SCSEEEECCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTS-CSEEEECCS--SCEEEEEECSSCTT
T ss_pred C-----cceeEeecCCCCeEEEEeCCCCCCEEEEEeC---CCeEEEEeCCCCCC-CeEEeecCC--CCEEEEEECCCCCC
Confidence 0 1222222222222333 99999877766554 34699999976331 133333332 3445555544 346
Q ss_pred EEEEEEeCCceeEEEEECCCC--------------ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 366 LIVHYIQNVRSVMDLHDLNTG--------------KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 366 l~~~~~~~~~~~l~~~dl~~g--------------~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++++...+ ..|.+||+... +.+..+......+..+.+++++..++++.+.. ..+.++++
T Consensus 336 ~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~~ 408 (430)
T 2xyi_A 336 ILASSGTD--RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED---NIMQVWQM 408 (430)
T ss_dssp EEEEEETT--SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT---SEEEEEEE
T ss_pred EEEEEeCC--CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC---CCEEEeEc
Confidence 77777666 47888998541 23333333345678899999887566665543 46888887
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-07 Score=97.71 Aligned_cols=248 Identities=11% Similarity=0.061 Sum_probs=145.0
Q ss_pred CcEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCc---EEEEEEEecCCCCCC
Q psy4818 140 GTTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHK---GFFYNQYCDINGTAD 215 (734)
Q Consensus 140 ~~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~---~l~y~~~~~~~~~~~ 215 (734)
+...+..+.|+| ++++|+... .. ..|++||+.+++.+...........+.|+|++. .|+....+.
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSS-FD----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP------ 166 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEE-TT----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS------
T ss_pred CCCcEEEEEEccCCCcEEEEEe-CC----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC------
Confidence 345588999999 666666543 23 369999999988644332222335778888544 566554322
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC---
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG--- 292 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~--- 292 (734)
.|+++++.++.. +..+.. +...+..+.|+|+|++++++... ...|++||+.++. ..+..
T Consensus 167 ----------~v~~~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~ll~~~~~---dg~i~i~d~~~~~-~~~~~~~~ 228 (408)
T 4a11_B 167 ----------KVQLCDLKSGSC--SHILQG--HRQEILAVSWSPRYDYILATASA---DSRVKLWDVRRAS-GCLITLDQ 228 (408)
T ss_dssp ----------SEEEEESSSSCC--CEEECC--CCSCEEEEEECSSCTTEEEEEET---TSCEEEEETTCSS-CCSEECCT
T ss_pred ----------eEEEEeCCCcce--eeeecC--CCCcEEEEEECCCCCcEEEEEcC---CCcEEEEECCCCC-cccccccc
Confidence 688889876643 223332 33356789999999986655543 2579999997732 11100
Q ss_pred -----CCCcee-eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC---CCCceeEE-EEEe
Q psy4818 293 -----KFPLKT-VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE---DENRTLDV-VAAV 361 (734)
Q Consensus 293 -----~~~~~~-l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~-~~~~ 361 (734)
...... ........... |+|+|+.|+..+.. ..|..+|+.++... ...... ........ ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD----NRMRLWNSSNGENT--LVNYGKVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCBC--CCCCCCCCCCCSSCCCCEECCS
T ss_pred cccccceeeccccccccCceeEEEEcCCCCEEEEecCC----CeEEEEECCCCccc--eeccccccccccccceeEEecC
Confidence 000000 01112222333 89999888766543 35999999875421 111100 00111111 1112
Q ss_pred eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 362 ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..+++.. .+ ..|++||+.+++.+..+....+.+..+.+++++..++. .+.. ..+..||+
T Consensus 303 ~~~~~~~~~-~~--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~d---g~i~iw~~ 363 (408)
T 4a11_B 303 CSSEFVFVP-YG--STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS-GSRD---CNILAWVP 363 (408)
T ss_dssp SSSCEEEEE-ET--TEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE-EETT---SCEEEEEE
T ss_pred CCceEEEEe-cC--CEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE-ECCC---CeEEEEeC
Confidence 223444443 33 47999999999888888766777888899998866553 3332 46888998
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-07 Score=96.48 Aligned_cols=241 Identities=13% Similarity=0.113 Sum_probs=136.6
Q ss_pred CcEEEeeEEeCCC---CcEEEEEEeCCCCceEEEEEEECCC-CCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCC
Q psy4818 140 GTTALKLYAFSDN---GKHFAYCLSKSGSDWNTLHIKDVDT-GKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGT 213 (734)
Q Consensus 140 ~~~~~~~~~~SPD---G~~la~~~~~~g~~~~~l~v~dl~~-g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~ 213 (734)
+...+..++|||| |++|+.... + ..|++||+.+ +..+.... ....+..+.|+||++.|+....+.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---- 108 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSW-A----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK---- 108 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEET-T----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CCCceEEEEEcCCCCCceEEEEECC-C----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC----
Confidence 3455889999999 688876553 2 3699999987 54432221 222346899999999888665432
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEE--ecCCcEEEEEEecCCCCceEEEEeCCCCCCCc-c
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV--TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK-I 290 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~-l 290 (734)
.|.+|++.+... +.+.. +...+..+.| +|+|++|+.... ...|++||+.++.... +
T Consensus 109 ------------~v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 109 ------------TAKMWDLSSNQA--IQIAQ---HDAPVKTIHWIKAPNYSCVMTGSW----DKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp ------------EEEEEETTTTEE--EEEEE---CSSCEEEEEEEECSSCEEEEEEET----TSEEEEECSSCSSCSEEE
T ss_pred ------------cEEEEEcCCCCc--eeecc---ccCceEEEEEEeCCCCCEEEEccC----CCcEEEEECCCCcEEEEE
Confidence 788999887642 12222 2334567888 999998875432 2579999988732110 0
Q ss_pred cCCCCcee--------eeccccceE-----------------------E--EEEecCCe----EEEEeCCCCCCceEEEE
Q psy4818 291 SGKFPLKT--------VIPGMDHHH-----------------------E--IIANNGPE----LIVKTTKNAPKGKVVTI 333 (734)
Q Consensus 291 ~~~~~~~~--------l~~~~~~~~-----------------------~--~~s~dg~~----l~~~s~~~~~~~~l~~~ 333 (734)
........ ++....... . .+.+++.. ++..+. +..|..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----dg~i~i~ 243 (368)
T 3mmy_A 168 QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI----EGRVAIH 243 (368)
T ss_dssp ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET----TSEEEEE
T ss_pred ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC----CCcEEEE
Confidence 00000000 000000000 0 02222211 222221 3457777
Q ss_pred ecCCCCC-CCceEeecCCCC----------ceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEee
Q psy4818 334 NLNNPCE-KNWKTLIPEDEN----------RTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHI 402 (734)
Q Consensus 334 d~~~~~~-~~~~~l~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~ 402 (734)
++..... .....+..+... ..+..+.+..++.++++...+ ..|++||+.+++.+..+....+.+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD--GRFSFWDKDARTKLKTSEQLDQPISAC 321 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT--SCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC--CeEEEEECCCCcEEEEecCCCCCceEE
Confidence 7765421 011222222100 035555565546666666665 469999998898878887666778889
Q ss_pred ccCcccceEEEEEe
Q psy4818 403 SGRRKYNEVFYGFT 416 (734)
Q Consensus 403 ~~~~d~~~l~~~~s 416 (734)
.+++++..++...+
T Consensus 322 ~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 322 CFNHNGNIFAYASS 335 (368)
T ss_dssp EECTTSSCEEEEEC
T ss_pred EECCCCCeEEEEec
Confidence 99999877665543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-07 Score=97.84 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=136.9
Q ss_pred cEEEeeEEeCCC---CcEEEEEEeCCCCceEEEEEEECCCCCcccccc------cccccCeeEEEcC----CcEEEEEEE
Q psy4818 141 TTALKLYAFSDN---GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL------KNVKFPSISWTHD----HKGFFYNQY 207 (734)
Q Consensus 141 ~~~~~~~~~SPD---G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~------~~~~~~~~~wSpD----g~~l~y~~~ 207 (734)
...+..++|||+ |..+.++....| .|.+||+.+++.+.... ....+..++|+|| |+.|+....
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSN----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETT----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCceEEEEEecccCCCCceEEEECCCC----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 345889999985 665555554333 69999999776532211 1123468899999 445555443
Q ss_pred ecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCC
Q psy4818 208 CDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLP 286 (734)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~ 286 (734)
+ ..|.++++.+.. .+..+. .+...+..+.|+| ++++|+.... ...|++||+.++.
T Consensus 94 d----------------g~i~v~d~~~~~--~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~ 149 (366)
T 3k26_A 94 R----------------GIIRIINPITMQ--CIKHYV--GHGNAINELKFHPRDPNLLLSVSK----DHALRLWNIQTDT 149 (366)
T ss_dssp T----------------CEEEEECTTTCC--EEEEEE--SCCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTTTE
T ss_pred C----------------CEEEEEEchhce--Eeeeec--CCCCcEEEEEECCCCCCEEEEEeC----CCeEEEEEeecCe
Confidence 2 278899887653 222333 2334567899999 8888875432 2579999998721
Q ss_pred CCcccCCCCceee---eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee---------------
Q psy4818 287 DGKISGKFPLKTV---IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI--------------- 347 (734)
Q Consensus 287 ~~~l~~~~~~~~l---~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------------- 347 (734)
....+ .......... |+|+++.|+..+.. ..|..+|+.++.. ...+.
T Consensus 150 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 150 --------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD----HSLKLWRINSKRM--MNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp --------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETT----SCEEEEESCSHHH--HHHHHHHHTCCGGGCSSCCC
T ss_pred --------EEEEecccccccCceeEEEECCCCCEEEEecCC----CCEEEEECCCCcc--ccccceeEEecCCCCccccc
Confidence 11111 1122223333 89999887765542 4588899876421 00000
Q ss_pred -----------cCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCce--------------eeeeCCCCceEEee
Q psy4818 348 -----------PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKR--------------LHSFPLDLGQITHI 402 (734)
Q Consensus 348 -----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~--------------~~~l~~~~g~v~~~ 402 (734)
.......+..+.+. ++ ++++...+ ..|.+||+.+++. +..+....+.+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWL-GD-LILSKSCE--NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEE-TT-EEEEECSS--SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC
T ss_pred ceeeccCccccccCCcceEEEEEEc-CC-EEEEEecC--CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE
Confidence 00012233444444 34 44445444 4788999866543 23333333445566
Q ss_pred ccCcc--cceEEEEEecCCCCceEEEEeC
Q psy4818 403 SGRRK--YNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 403 ~~~~d--~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++++ +..++.. +. -..++.||+
T Consensus 292 ~~s~~~~~~~l~~~-~~---dg~i~vwd~ 316 (366)
T 3k26_A 292 RFSMDFWQKMLALG-NQ---VGKLYVWDL 316 (366)
T ss_dssp CCEECTTSSEEEEE-CT---TSCEEEEEC
T ss_pred EEcCCCCCcEEEEE-ec---CCcEEEEEC
Confidence 77777 6555443 32 246999998
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.5e-07 Score=93.69 Aligned_cols=281 Identities=14% Similarity=0.123 Sum_probs=148.6
Q ss_pred CcEEeCCeEEEEEEcCCCC-eeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC-----CCCceE
Q psy4818 95 APQRQENNYFYFHNKGLQN-HSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK-----SGSDWN 168 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~-----~g~~~~ 168 (734)
+|-+++.++|-. +.+..+ ...+.+.+.......--+... .. - ++.+||||++|..+... .|....
T Consensus 79 ~p~~~~~~vyV~-n~~~~~~~~~VsVID~~t~~vv~~I~vG------~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 79 APAPDARRVYIQ-DPAHFAAITQQFVIDGSTGRILGMTDGG------FL-P-HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCCCCTTEEEEE-ECTTTCSSEEEEEEETTTTEEEEEEEEC------SS-C-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cCCCCCCEEEEE-CCCcCCCCCeEEEEECCCCEEEEEEECC------CC-C-ceEECCCCCEEEEEeccccccccCCCCC
Confidence 555777776544 433111 145777665443322222211 11 2 78999999998776531 122335
Q ss_pred EEEEEECCCCCccccc-cc-------ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCe
Q psy4818 169 TLHIKDVDTGKDYPEV-LK-------NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDI 240 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~-~~-------~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~ 240 (734)
.|.++|+.+++.+... .. ......+.+||||+++|..... ....|.++++.+.....
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~--------------~~~~VsVID~~t~kvv~- 214 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS--------------PAPAVGVVDLEGKTFDR- 214 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS--------------SSCEEEEEETTTTEEEE-
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC--------------CCCeEEEEECCCCeEEE-
Confidence 8999999999864322 11 1223578999999998876531 12368888877653211
Q ss_pred eEEecCCCCee-----EEEEEEecCCcEEEEEEecCCCCceE--EEEeCCCCCCCcccCCCCceeeeccccceEEEEEec
Q psy4818 241 PVVEFPNGRSL-----GLHSEVTDCGRYLLVSTSNNTQGSDL--HYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANN 313 (734)
Q Consensus 241 ~v~~~~~~~~~-----~~~~~~SpDG~~l~~~~~~~~~~~~i--~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~d 313 (734)
.+..+..... ...+.+++||+.+++.. ........ ..++... ..+. ....++++
T Consensus 215 -~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~------------~p~~-----~~~~~~~d 275 (426)
T 3c75_H 215 -MLDVPDCYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTED------------ELLI-----NHPAFSLR 275 (426)
T ss_dssp -EEECCSEEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTT------------SCBC-----SCCEECTT
T ss_pred -EEEcCCceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCC------------Ccee-----eEeeecCC
Confidence 1111110000 00134556666555443 11110000 0011111 0000 01136889
Q ss_pred CCeEEEEeCCCCCCceEEEEecCCCCC---CCceEe---------ecCCCCceeEEEEEeeCCEEEEEEEeC-------C
Q psy4818 314 GPELIVKTTKNAPKGKVVTINLNNPCE---KNWKTL---------IPEDENRTLDVVAAVANNKLIVHYIQN-------V 374 (734)
Q Consensus 314 g~~l~~~s~~~~~~~~l~~~d~~~~~~---~~~~~l---------~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~ 374 (734)
+++++|.+.. .+|+.+|+.+... ..|... .+.. ...+ ....+++++|+..... +
T Consensus 276 g~~~~~~s~~----g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g-~~~v--a~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 276 SGRLVWPTYT----GKIFQADLTAEGATFRAPIEALTEAERADDWRPGG-WQQT--AYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp TCEEEEEBTT----SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS-SSCE--EEEGGGTEEEEEEEECCTTCTTSC
T ss_pred CCEEEEEeCC----CcEEEEeccCCceEEeeeeeeccccccccccccCC-ceee--EEcCCCCEEEEEecccccccccCC
Confidence 9999988652 3699999865430 011100 0110 0111 2233446777765431 2
Q ss_pred ceeEEEEECCCCceeeeeCCCCceEEeeccCcccc-eEEEEEecCCCCceEEEEeC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYN-EVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~-~l~~~~ss~~~P~~~~~~d~ 429 (734)
...|.++|+++++.++.|..+. ...++.+++|++ .+++.. .. -..+.++|+
T Consensus 349 s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n-~~--s~~VsVID~ 400 (426)
T 3c75_H 349 SRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALS-AG--TQTLHIYDA 400 (426)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEE-TT--TTEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEc-CC--CCeEEEEEC
Confidence 3589999999999888886542 244677889998 555443 22 257999999
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=101.25 Aligned_cols=211 Identities=14% Similarity=0.132 Sum_probs=121.5
Q ss_pred cEEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCC---CCccc--cc-ccccccCeeEEEcCCcEEEEEEEecCCCC
Q psy4818 141 TTALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDT---GKDYP--EV-LKNVKFPSISWTHDHKGFFYNQYCDINGT 213 (734)
Q Consensus 141 ~~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~---g~~~~--~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~ 213 (734)
...+..++||| ||++||.... ...|++||+.+ +.... .. .....+..++|+||++.|+....+.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---- 133 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSD-----QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG---- 133 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEET-----TSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CCceEEEEECCCCCCEEEEecC-----CceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC----
Confidence 34588999999 9999986653 24799999877 54221 11 1222346899999999888766432
Q ss_pred CCCCcccccCCcEEEEEECC---CCCCCCe----eE--Eec-CC-CCeeEEEE--EEecCCcEEEEEEecCCCCceEEEE
Q psy4818 214 ADGTETTAHMGQKIYYHVLG---TEQDKDI----PV--VEF-PN-GRSLGLHS--EVTDCGRYLLVSTSNNTQGSDLHYF 280 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~---t~~~~~~----~v--~~~-~~-~~~~~~~~--~~SpDG~~l~~~~~~~~~~~~i~~~ 280 (734)
.|.+|++. ++..... .+ +.. +. .......+ .+++|+++|+.... ...|++|
T Consensus 134 ------------~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iw 197 (437)
T 3gre_A 134 ------------QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN----LSRVIIF 197 (437)
T ss_dssp ------------EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET----TSEEEEE
T ss_pred ------------EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 57777664 2211000 00 000 00 11122333 37789998875432 2689999
Q ss_pred eCCCCCCCcccCCCCceeeec--cccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEE
Q psy4818 281 DLHSLPDGKISGKFPLKTVIP--GMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDV 357 (734)
Q Consensus 281 d~~~~~~~~l~~~~~~~~l~~--~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ 357 (734)
|+.++ .....+.. ........ |+|+++.|+..+.. ..|..||+.++. ....+.......+..
T Consensus 198 d~~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~---~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 198 DIRTL--------ERLQIIENSPRHGAVSSICIDEECCVLILGTTR----GIIDIWDIRFNV---LIRSWSFGDHAPITH 262 (437)
T ss_dssp ETTTC--------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETT----SCEEEEETTTTE---EEEEEBCTTCEEEEE
T ss_pred eCCCC--------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCC----CeEEEEEcCCcc---EEEEEecCCCCceEE
Confidence 99873 12222322 22333333 89998877765543 459999998754 222222121334444
Q ss_pred EEEe----eCCEEEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 358 VAAV----ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 358 ~~~~----~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
+.+. .++.++++...+ ..|++||+.+++.++.+.
T Consensus 263 ~~~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSK--TFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp EEECTTTCTTEEEEEEESTT--EEEEEEETTTTEEEEEEE
T ss_pred EEeccccCCCccEEEEEcCC--CcEEEEEcCCCcEEEEEE
Confidence 4332 224466665554 589999998888666554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-06 Score=91.00 Aligned_cols=240 Identities=12% Similarity=0.020 Sum_probs=139.1
Q ss_pred CCcEEEeeEEeCCCC-cEEEEEEeCCCCceEEEEEEECCCCCcccc----cc--cccccCeeEEEcCCcEEEEEEEecCC
Q psy4818 139 DGTTALKLYAFSDNG-KHFAYCLSKSGSDWNTLHIKDVDTGKDYPE----VL--KNVKFPSISWTHDHKGFFYNQYCDIN 211 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG-~~la~~~~~~g~~~~~l~v~dl~~g~~~~~----~~--~~~~~~~~~wSpDg~~l~y~~~~~~~ 211 (734)
++...|..++||||+ ++|| +.... ..|++||+.+++.... +. ....+..+.|+|||+.|+....+.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~-S~s~D----~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~-- 108 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMIL-SASRD----KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG-- 108 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEE-EEETT----SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred CccCCEEEEEEeCCCCCEEE-EEcCC----CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc--
Confidence 445568899999985 6665 33333 3699999987653211 11 112346789999999887766432
Q ss_pred CCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 212 GTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
.|+.++...... ...... .........+++++++|+.... ...+.+||+....
T Consensus 109 --------------~i~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~----- 161 (340)
T 4aow_A 109 --------------TLRLWDLTTGTT--TRRFVG--HTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVC----- 161 (340)
T ss_dssp --------------EEEEEETTTTEE--EEEEEC--CSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCE-----
T ss_pred --------------cceEEeecccce--eeeecC--CCCceeEEEEeecCccceeecC----CCeEEEEEeCCCc-----
Confidence 577777765432 111221 2224456789999998874332 2568888886611
Q ss_pred CCCCceeeecc-ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEE
Q psy4818 292 GKFPLKTVIPG-MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVH 369 (734)
Q Consensus 292 ~~~~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 369 (734)
........ ...... .+++++...++++.. .+..|..+|+.+.. ....+... ...+..+.+..++.++++
T Consensus 162 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~---~~~~~~~h-~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 162 ---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCK---LKTNHIGH-TGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp ---EEEECSSSCSSCEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTE---EEEEECCC-SSCEEEEEECTTSSEEEE
T ss_pred ---eEEEEeccccCcccceEEccCCCCcEEEEEc--CCCEEEEEECCCCc---eeeEecCC-CCcEEEEEECCCCCEEEE
Confidence 11111111 111222 267776544433321 23458889987754 22222222 334555656555667777
Q ss_pred EEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 370 YIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 370 ~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+ ..+.+||+.+++.+..+... ..+..+.+++++. ++... + -..+..+|+
T Consensus 233 ~s~D--g~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~-~---d~~i~iwd~ 284 (340)
T 4aow_A 233 GGKD--GQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRY-WLCAA-T---GPSIKIWDL 284 (340)
T ss_dssp EETT--CEEEEEETTTTEEEEEEECS-SCEEEEEECSSSS-EEEEE-E---TTEEEEEET
T ss_pred EeCC--CeEEEEEeccCceeeeecCC-ceEEeeecCCCCc-eeecc-C---CCEEEEEEC
Confidence 7666 47899999888876666544 3455677777653 33332 2 246899998
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-07 Score=91.85 Aligned_cols=233 Identities=10% Similarity=-0.003 Sum_probs=134.1
Q ss_pred EEEeeEEe-----CC-CCcEEEEEEeCCCCceEEEEEEECCCCCcc-------cc-cccccccCeeEEEcCCcEEEEEEE
Q psy4818 142 TALKLYAF-----SD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-------PE-VLKNVKFPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 142 ~~~~~~~~-----SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~-------~~-~~~~~~~~~~~wSpDg~~l~y~~~ 207 (734)
..+..+.| +| ||++|+-... ...|++||+.+++.. .. ......+..++|+||++.|+-...
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~-----D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSR-----DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEET-----TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcC-----CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 34677888 77 9998885443 246999998765321 11 111112367899999998776554
Q ss_pred ecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC
Q psy4818 208 CDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 287 (734)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~ 287 (734)
+. .|.+|++.++.. +..+.. +...+..++|||||++|+... ....|.+||+.+ ..
T Consensus 97 D~----------------~v~lwd~~~~~~--~~~~~~--h~~~v~~v~~sp~~~~l~s~~----~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 97 DK----------------TLRLWDLRTGTT--YKRFVG--HQSEVYSVAFSPDNRQILSAG----AEREIKLWNILG-EC 151 (343)
T ss_dssp TS----------------EEEEEETTSSCE--EEEEEC--CCSCEEEEEECSSTTEEEEEE----TTSCEEEEESSS-CE
T ss_pred CC----------------cEEEEECCCCcE--EEEEcC--CCCcEEEEEECCCCCEEEEEc----CCCEEEEEeccC-Cc
Confidence 32 789999887642 222332 334567899999999987433 225799999875 11
Q ss_pred CcccCCCCceeee---ccccceEEE-EEecC----------CeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc
Q psy4818 288 GKISGKFPLKTVI---PGMDHHHEI-IANNG----------PELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 288 ~~l~~~~~~~~l~---~~~~~~~~~-~s~dg----------~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 353 (734)
..... ......... |+|++ ..|+..+. +..|..+|..... ...+... ..
T Consensus 152 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~~~~~~h-~~ 214 (343)
T 2xzm_R 152 --------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW----DGRLKVWNTNFQI----RYTFKAH-ES 214 (343)
T ss_dssp --------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET----TSEEEEEETTTEE----EEEEECC-SS
T ss_pred --------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC----CCEEEEEcCCCce----eEEEcCc-cc
Confidence 00010 111112222 77776 33443332 3468888854321 2222222 23
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCC-CceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNT-GKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~-g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..+.+..++.++++...+ ..|++||+.+ +.....+.. ...+..+.++|++..+.. ++. ..+.++|+
T Consensus 215 ~v~~~~~s~~g~~l~sgs~d--g~v~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~~~la~--~~d---~~v~iw~~ 283 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGKD--KKLLIWDILNLTYPQREFDA-GSTINQIAFNPKLQWVAV--GTD---QGVKIFNL 283 (343)
T ss_dssp CEEEEEECTTSSEEEEEETT--CEEEEEESSCCSSCSEEEEC-SSCEEEEEECSSSCEEEE--EES---SCEEEEES
T ss_pred cceEEEECCCCCEEEEEcCC--CeEEEEECCCCcccceeecC-CCcEEEEEECCCCCEEEE--ECC---CCEEEEEe
Confidence 45556665556667777666 4789999843 333333322 234778888888764433 222 25888888
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-08 Score=99.88 Aligned_cols=248 Identities=10% Similarity=0.022 Sum_probs=139.0
Q ss_pred EEEeeEEeCCC----CcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEc-CCcEEEEEEEecCCCCCC
Q psy4818 142 TALKLYAFSDN----GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTH-DHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 142 ~~~~~~~~SPD----G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSp-Dg~~l~y~~~~~~~~~~~ 215 (734)
..+..++|||| |++|+.... + ..|++||+.+++.+.... ....+..+.|+| |++.|+....+.
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~-d----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg------ 138 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGS-R----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH------ 138 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEET-T----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS------
T ss_pred CcEEEEEeccCCCCCCCEEEEecC-C----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC------
Confidence 34788999999 667775543 2 479999999988644322 222346899999 888777665432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEec-CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc-ccC-
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEF-PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK-ISG- 292 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~-l~~- 292 (734)
.|++|++.++. .+..+.. ..+...+..+.|+|||++|+.... ...|.+||+.++.... +..
T Consensus 139 ----------~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~ 202 (366)
T 3k26_A 139 ----------ALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKES 202 (366)
T ss_dssp ----------CEEEEETTTTE--EEEEECSTTSCSSCEEEEEECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHH
T ss_pred ----------eEEEEEeecCe--EEEEecccccccCceeEEEECCCCCEEEEecC----CCCEEEEECCCCcccccccee
Confidence 68889987653 2222211 223446778999999999875432 2579999998621100 000
Q ss_pred -----CC-------------CceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCC---------Cc-
Q psy4818 293 -----KF-------------PLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEK---------NW- 343 (734)
Q Consensus 293 -----~~-------------~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---------~~- 343 (734)
.. .+............. |+ ++.++..+. +..|..+|+.+.... ..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred EEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchh
Confidence 00 000000011111122 54 665554333 356888998764310 00
Q ss_pred -eEeecCCCCceeEEEEEeeC--CEEEEEEEeCCceeEEEEECCCCcee----eeeCCC--CceEEeeccCcccceEEEE
Q psy4818 344 -KTLIPEDENRTLDVVAAVAN--NKLIVHYIQNVRSVMDLHDLNTGKRL----HSFPLD--LGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 344 -~~l~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~~~dl~~g~~~----~~l~~~--~g~v~~~~~~~d~~~l~~~ 414 (734)
...+... ...+..+.+..+ +.++++...+ ..|++||+.+++.. ..+... .+.+..+.++++++.++..
T Consensus 277 ~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 353 (366)
T 3k26_A 277 ILGRFDYS-QCDIWYMRFSMDFWQKMLALGNQV--GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAV 353 (366)
T ss_dssp EEEEEECS-SCCSSCCCCEECTTSSEEEEECTT--SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred eecccccc-CCcEEEEEEcCCCCCcEEEEEecC--CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEE
Confidence 0011111 111122222333 4555555554 47999999877532 245544 4678889999988765543
Q ss_pred EecCCCCceEEEEeC
Q psy4818 415 FTSFLQPGTIYHCNI 429 (734)
Q Consensus 415 ~ss~~~P~~~~~~d~ 429 (734)
+.. ..++.||+
T Consensus 354 -~~d---g~i~iwd~ 364 (366)
T 3k26_A 354 -CDD---ASIWRWDR 364 (366)
T ss_dssp -ETT---SEEEEEEC
T ss_pred -eCC---CEEEEEEe
Confidence 332 47888887
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-09 Score=116.86 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=79.3
Q ss_pred CCCCcEEEEecCCCCCc---CCccccHHHHHHHHhcCeEEEEEecccC-CCCCc---hhhh-ccccccCCCchhHHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVS---VLPTFSISRCMFLRHFNGIYAIPNIRGG-GELGE---DWHN-AGRLLKKQNCFDDFQAAA 556 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l~~~G~~v~~~~~rG~-~~~g~---~~~~-~~~~~~~~~~~~D~~~~~ 556 (734)
.++.|+||++|||.... ..+.+... .+.++.|++|+.+|||-| -||.. .+.. ......+...+.|+++++
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~--~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al 215 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNAD--IMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAI 215 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCH--HHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCch--hhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHH
Confidence 46789999999985332 22234332 333446999999999942 12221 0000 001112233588999999
Q ss_pred HHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcc
Q psy4818 557 EYMINKK---YTKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGAL 603 (734)
Q Consensus 557 ~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~ 603 (734)
+|+.++- -.||+||.|+|+|+||.+++.++... ..+|+++|+.+|..
T Consensus 216 ~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 216 RWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 9998862 26999999999999999999887652 36899999988854
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-06 Score=88.51 Aligned_cols=231 Identities=8% Similarity=0.030 Sum_probs=140.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++| |||++|+.... . ..|++||+.+++..... ........+.|+||++.|+....+.
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~-d----g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------- 81 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSR-D----GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT----------- 81 (313)
T ss_dssp SCEEEEEE-EETTEEEEEET-T----SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS-----------
T ss_pred CCcEEEEe-cCCCEEEEEEc-C----CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC-----------
Confidence 34778889 99999886543 2 37999999888743322 1222346899999999888776433
Q ss_pred ccCCcEEEEEECCCCCCCC-eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 221 AHMGQKIYYHVLGTEQDKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.|.++++....... +..+. .+...+..+.| ++++|+.... ...|.+||... ....+
T Consensus 82 -----~i~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~~~~l~~~~~----d~~i~~~d~~~----------~~~~~ 138 (313)
T 3odt_A 82 -----MINGVPLFATSGEDPLYTLI--GHQGNVCSLSF--QDGVVISGSW----DKTAKVWKEGS----------LVYNL 138 (313)
T ss_dssp -----CEEEEETTCCTTSCC-CEEC--CCSSCEEEEEE--ETTEEEEEET----TSEEEEEETTE----------EEEEE
T ss_pred -----eEEEEEeeecCCCCcccchh--hcccCEEEEEe--cCCEEEEEeC----CCCEEEEcCCc----------EEEec
Confidence 57777776543221 22222 22334555666 6777764332 25788998222 12222
Q ss_pred eccccceEEE-EEe-cCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 300 IPGMDHHHEI-IAN-NGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 300 ~~~~~~~~~~-~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
.......... |.+ +++.++..+.. ..|..+|.... ...+.......+..+.+..++. +++...+ ..
T Consensus 139 ~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~-----~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d--g~ 206 (313)
T 3odt_A 139 QAHNASVWDAKVVSFSENKFLTASAD----KTIKLWQNDKV-----IKTFSGIHNDVVRHLAVVDDGH-FISCSND--GL 206 (313)
T ss_dssp ECCSSCEEEEEEEETTTTEEEEEETT----SCEEEEETTEE-----EEEECSSCSSCEEEEEEEETTE-EEEEETT--SE
T ss_pred ccCCCceeEEEEccCCCCEEEEEECC----CCEEEEecCce-----EEEEeccCcccEEEEEEcCCCe-EEEccCC--Ce
Confidence 2222333333 666 77777655543 35888884322 2233332234556666666566 5555555 47
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|++||+.+++.+..+....+.+..+.+++++ .++ +.+. -..++.||+
T Consensus 207 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~~---dg~v~iwd~ 253 (313)
T 3odt_A 207 IKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV-SCGE---DRTVRIWSK 253 (313)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE-EEET---TSEEEEECT
T ss_pred EEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE-EEec---CCEEEEEEC
Confidence 9999998898877787666778888889888 443 3332 357999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5e-08 Score=120.36 Aligned_cols=231 Identities=12% Similarity=0.080 Sum_probs=148.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+..++|||||++++..... ..|++||+.+++.+.... ....+..++|||||+.|+....+.
T Consensus 964 i~~~~~sp~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg------------- 1025 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDED-----GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS------------- 1025 (1249)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS-------------
T ss_pred EEEEEEcCCCCEEEEEcCC-----CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC-------------
Confidence 6789999999999987643 258999999987643222 222346899999999888765432
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
.|.+|++.++.. +. .......+..+.|+||++.+... ....|++||+.++. ....+...
T Consensus 1026 ---~i~vwd~~~~~~----~~-~~~~~~~v~~~~~~~~~~l~~~~-----~dg~v~vwd~~~~~--------~~~~~~~~ 1084 (1249)
T 3sfz_A 1026 ---VIQVWNWQTGDY----VF-LQAHQETVKDFRLLQDSRLLSWS-----FDGTVKVWNVITGR--------IERDFTCH 1084 (1249)
T ss_dssp ---BEEEEETTTTEE----EC-CBCCSSCEEEEEECSSSEEEEEE-----SSSEEEEEETTTTC--------CCEEEECC
T ss_pred ---EEEEEECCCCce----EE-EecCCCcEEEEEEcCCCcEEEEE-----CCCcEEEEECCCCc--------eeEEEccc
Confidence 688888877532 11 11233456788999988765431 22589999998832 22223322
Q ss_pred ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEE
Q psy4818 303 MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 303 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 381 (734)
...... .|+|||+.++..+. +..|..||+.++.. ...+..+ ...+..+.+..++.++++...++ .|++|
T Consensus 1085 ~~~v~~~~~s~d~~~l~s~s~----d~~v~iwd~~~~~~--~~~l~~h--~~~v~~~~~s~dg~~lat~~~dg--~i~vw 1154 (1249)
T 3sfz_A 1085 QGTVLSCAISSDATKFSSTSA----DKTAKIWSFDLLSP--LHELKGH--NGCVRCSAFSLDGILLATGDDNG--EIRIW 1154 (1249)
T ss_dssp SSCCCCEEECSSSSSCEEECC----SSCCCEECSSSSSC--SBCCCCC--SSCEEEEEECSSSSEEEEEETTS--CCCEE
T ss_pred CCcEEEEEECCCCCEEEEEcC----CCcEEEEECCCcce--eeeeccC--CCcEEEEEECCCCCEEEEEeCCC--EEEEE
Confidence 222223 38999998776544 24578888876552 2222222 23455555555566777776664 58899
Q ss_pred ECCCCceeeee---------CCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 382 DLNTGKRLHSF---------PLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 382 dl~~g~~~~~l---------~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.+|+.+..+ ....+.+..+.+++++..++.. + +.+..||+
T Consensus 1155 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-~-----g~v~vwd~ 1205 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-G-----GYLKWWNV 1205 (1249)
T ss_dssp ESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-S-----SSEEEBCS
T ss_pred ECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-C-----CeEEEEEC
Confidence 99888765544 2224557788889998777543 2 57999998
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-07 Score=105.78 Aligned_cols=238 Identities=13% Similarity=0.052 Sum_probs=144.8
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc------ccccccccCeeEEEcCCcEEEEEEEecCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP------EVLKNVKFPSISWTHDHKGFFYNQYCDINGT 213 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~------~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~ 213 (734)
|...+..++|+|++..+.++.+.. ..|++||+.++.... .......+..++|||||+.|+....+.
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D----~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg---- 452 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRD----KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG---- 452 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETT----SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CCceeEEEEecCCCCCEEEEEeCC----CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC----
Confidence 445578899999875554444433 479999998654211 111112235789999999888766433
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.+|++.++.. +..+. .+...+..++|||||++|+-.+ ....|.+||+.+..
T Consensus 453 ------------~v~vwd~~~~~~--~~~~~--~h~~~v~~~~~s~~~~~l~s~s----~D~~i~iwd~~~~~------- 505 (694)
T 3dm0_A 453 ------------ELRLWDLAAGVS--TRRFV--GHTKDVLSVAFSLDNRQIVSAS----RDRTIKLWNTLGEC------- 505 (694)
T ss_dssp ------------EEEEEETTTTEE--EEEEE--CCSSCEEEEEECTTSSCEEEEE----TTSCEEEECTTSCE-------
T ss_pred ------------cEEEEECCCCcc--eeEEe--CCCCCEEEEEEeCCCCEEEEEe----CCCEEEEEECCCCc-------
Confidence 789999877532 22222 2334567899999999987432 22578999976510
Q ss_pred CCceeeec----cccceEEE-EEecCCe-EEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 294 FPLKTVIP----GMDHHHEI-IANNGPE-LIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 294 ~~~~~l~~----~~~~~~~~-~s~dg~~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
...+.. +....... |+|++.. +++.... +..|..+|+.+.. ....+... ...+..+.+..++.++
T Consensus 506 --~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~vwd~~~~~---~~~~~~~h-~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 506 --KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW---DKTVKVWNLSNCK---LRSTLAGH-TGYVSTVAVSPDGSLC 576 (694)
T ss_dssp --EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTCC---EEEEECCC-SSCEEEEEECTTSSEE
T ss_pred --ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC---CCeEEEEECCCCc---EEEEEcCC-CCCEEEEEEeCCCCEE
Confidence 111111 11112223 8888743 3333332 3458899997654 23333332 3445566665556777
Q ss_pred EEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++...+ ..|.+||+.+++.+..+.. ...+..+.+++++..+... +. ..+.++|+
T Consensus 577 ~sg~~D--g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~-~~----~~i~iwd~ 630 (694)
T 3dm0_A 577 ASGGKD--GVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA-TE----HGIKIWDL 630 (694)
T ss_dssp EEEETT--SBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEE-ET----TEEEEEET
T ss_pred EEEeCC--CeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEE-cC----CCEEEEEC
Confidence 777666 4789999988887665543 3456678888887544332 22 25899999
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.3e-06 Score=84.15 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=142.4
Q ss_pred EEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc---ccccccCeeEEEcCCcEEEE
Q psy4818 128 EVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV---LKNVKFPSISWTHDHKGFFY 204 (734)
Q Consensus 128 ~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~---~~~~~~~~~~wSpDg~~l~y 204 (734)
+.+||...+..+-+ +..++|||++ .||.+.+ .+|++||+++|+.+... .....+..++|+|||+.|+.
T Consensus 14 ~rvldap~~~~d~y--~~~l~WS~~~-~lAvg~D------~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 14 DRILDAPEIRNDYY--LNLVDWSSGN-VLAVALD------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp SEEEECTTCCCCTT--CBCEEECTTS-EEEEEET------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred CEEeeCCCCccccc--ceEEEECCCC-EEEEEeC------CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence 34567555533311 3458999997 7887653 36999999999865422 12222468999999998887
Q ss_pred EEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 205 NQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
...+. .|.+|++.++.. +..+.. +.... ..++++++.++... ....+.+++..+
T Consensus 85 gs~Dg----------------~v~iw~~~~~~~--~~~~~~--h~~~~--~~~~~~~~~l~s~~----~~~~~~~~~~~~ 138 (318)
T 4ggc_A 85 GTSSA----------------EVQLWDVQQQKR--LRNMTS--HSARV--GSLSWNSYILSSGS----RSGHIHHHDVRV 138 (318)
T ss_dssp EETTS----------------EEEEEETTTTEE--EEEEEC--CSSCE--EEEEEETTEEEEEE----TTSEEEEEETTS
T ss_pred EECCC----------------cEEEeecCCcee--EEEecC--ccceE--EEeecCCCEEEEEe----cCCceEeeecCC
Confidence 66433 688899887632 222222 22222 35677888776432 224667777765
Q ss_pred CCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCC-ceEeecCCCCceeEEEEE-e
Q psy4818 285 LPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKN-WKTLIPEDENRTLDVVAA-V 361 (734)
Q Consensus 285 ~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~~~~-~ 361 (734)
+. .....+......... .++++|+.++..+. +..|.++|+.+++... ........ ...+....+ .
T Consensus 139 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~ 206 (318)
T 4ggc_A 139 AE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCP 206 (318)
T ss_dssp SS-------CEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEECT
T ss_pred Cc-------eeEEEEcCccCceEEEEEcCCCCEEEEEec----CcceeEEECCCCcccccceeeeccc-CCceEEEEecC
Confidence 21 111222222222222 37788887665443 2458889987654211 11122222 223333333 3
Q ss_pred eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 362 ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..++..........+.+|+...+........ ...+....++++++.+++...+. -..++++|+
T Consensus 207 ~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~--d~~i~iwd~ 271 (318)
T 4ggc_A 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFA--QNQLVIWKY 271 (318)
T ss_dssp TSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTT--TCCEEEEET
T ss_pred CCCcEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEcC--CCEEEEEEC
Confidence 334555555555556799999977665444332 23345566677777776543222 357899998
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-06 Score=83.81 Aligned_cols=227 Identities=8% Similarity=0.052 Sum_probs=135.7
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC---ccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK---DYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~---~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
.+..+.|||||++|+..... ..|++|++.... .+... ........+.| +++.|+....+.
T Consensus 61 ~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~--------- 124 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKD-----TMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDK--------- 124 (313)
T ss_dssp CEEEEEEETTTTEEEEEETT-----SCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTS---------
T ss_pred cEEEEEECCCCCEEEEecCC-----CeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCC---------
Confidence 47889999999999876542 358888887643 22111 11122345666 677776655322
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.|.+++.+ +.+..+.. +......+.|+| ++++++.... ...|.+||... ...
T Consensus 125 -------~i~~~d~~----~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~----------~~~ 177 (313)
T 3odt_A 125 -------TAKVWKEG----SLVYNLQA--HNASVWDAKVVSFSENKFLTASA----DKTIKLWQNDK----------VIK 177 (313)
T ss_dssp -------EEEEEETT----EEEEEEEC--CSSCEEEEEEEETTTTEEEEEET----TSCEEEEETTE----------EEE
T ss_pred -------CEEEEcCC----cEEEeccc--CCCceeEEEEccCCCCEEEEEEC----CCCEEEEecCc----------eEE
Confidence 67777721 12222222 233456788888 8888875432 25788898443 112
Q ss_pred eeec-cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 298 TVIP-GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 298 ~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
.+.. ....... .|++++. ++..+. +..|..+|+.++. ....+... ...+..+.+..++. +++...+
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~~~---~~~~~~~~-~~~i~~~~~~~~~~-l~~~~~d-- 245 (313)
T 3odt_A 178 TFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHTGD---VLRTYEGH-ESFVYCIKLLPNGD-IVSCGED-- 245 (313)
T ss_dssp EECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTTCC---EEEEEECC-SSCEEEEEECTTSC-EEEEETT--
T ss_pred EEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCchh---hhhhhhcC-CceEEEEEEecCCC-EEEEecC--
Confidence 2222 1222223 3889877 544333 3469999998765 23333332 33455565655454 4445444
Q ss_pred eeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 376 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..|++||+.+++.+..+..+.+.+..+.+++++. ++ +.++ -..++.||+
T Consensus 246 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~---dg~i~iw~~ 294 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-II-VGSS---DNLVRIFSQ 294 (313)
T ss_dssp SEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EE-EEET---TSCEEEEES
T ss_pred CEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EE-EEeC---CCcEEEEeC
Confidence 5799999999988778877766788888999886 33 3333 247899998
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=100.26 Aligned_cols=209 Identities=12% Similarity=0.058 Sum_probs=112.4
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC---cc-cccccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK---DY-PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~---~~-~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
...+..++|||||++|+.... + ..|++||+.+++ .. ...........+.|+||++.|+....+.
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~-d----~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 122 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQ-D----RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR------- 122 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEET-T----SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-------
T ss_pred CceEEEEEEeCCCCEEEEEeC-C----CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-------
Confidence 445889999999999887653 2 359999999887 21 1112222346899999999888776533
Q ss_pred CcccccCCcEEEEEECCCCCCCC-eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC-
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF- 294 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~- 294 (734)
.|+++++.+..... ...+..+ +...+..+.|+|||++|+....+ ..|++||+..+.........
T Consensus 123 ---------~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~ 188 (377)
T 3dwl_C 123 ---------VISVCYFEQENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGCAD----RKAYVLSAYVRDVDAKPEASV 188 (377)
T ss_dssp ---------CEEECCC-----CCCCEEECSS-CCSCEEEEEECTTSSEEEEEESS----SCEEEEEECCSSCC-CCCSCS
T ss_pred ---------eEEEEEECCcccceeeeEeecc-cCCCeEEEEEcCCCCEEEEEeCC----CEEEEEEEEecccCCCccccc
Confidence 57888887654211 1222221 33466789999999998864432 56888998642110000000
Q ss_pred -----Cceeee---ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCC--ceEeecCCCCceeEEEEEeeC
Q psy4818 295 -----PLKTVI---PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKN--WKTLIPEDENRTLDVVAAVAN 363 (734)
Q Consensus 295 -----~~~~l~---~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~ 363 (734)
+...+. ......... |+|+|+.|+..+.. ..|..+|+.++.... ...+..+ ...+..+.+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~ 262 (377)
T 3dwl_C 189 WGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD----SSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANE 262 (377)
T ss_dssp SCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT----TEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEET
T ss_pred cccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC----CcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCC
Confidence 011111 122222333 99999987766543 468888987765200 1222222 234455555555
Q ss_pred CEEEEEEEeCCceeEEEEECC
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLN 384 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~ 384 (734)
+.+++....+ .+.+|+..
T Consensus 263 ~~~l~~~~~~---~~~~~~~~ 280 (377)
T 3dwl_C 263 SAIVAAGYNY---SPILLQGN 280 (377)
T ss_dssp TEEEEEESSS---SEEEECCC
T ss_pred CCEEEEEcCC---cEEEEEeC
Confidence 7777666443 34566653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-07 Score=95.01 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=139.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc------cccc--ccccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD------YPEV--LKNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~------~~~~--~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
+...+|||||++||... ....+.+||+.++.. .... ..........|+|++...+++...
T Consensus 111 v~~~~~s~~g~~las~~-----~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~------- 178 (380)
T 3iz6_a 111 VMECAFAPNGQSVACGG-----LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG------- 178 (380)
T ss_dssp CCCCEECTTSSEEEECC-----SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT-------
T ss_pred EEEEEECCCCCEEEEee-----CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC-------
Confidence 55689999999998533 335689999876431 1111 111123567899986654444432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEec---CCCCeeEEEEEEec-CCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEF---PNGRSLGLHSEVTD-CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
...|.+|++.++. .+..+.. ..+...+..+.|++ +++.|+- .+ ....|.+||+....
T Consensus 179 --------D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-gs---~D~~v~~wd~~~~~----- 239 (380)
T 3iz6_a 179 --------DQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFIS-GS---CDTTVRLWDLRITS----- 239 (380)
T ss_dssp --------TSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEE-EE---TTSCEEEEETTTTC-----
T ss_pred --------CCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEE-EE---CCCeEEEEECCCCC-----
Confidence 1268888887764 2223321 12233456788876 7777663 32 22579999997411
Q ss_pred CCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC-----CceeEEEEEeeCCE
Q psy4818 292 GKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE-----NRTLDVVAAVANNK 365 (734)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~ 365 (734)
.....+.......... |+|+|+.|+-.+. +..|..||+.++.. ...+..... ...+..+.+..++.
T Consensus 240 --~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 240 --RAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp --CCCEEECCCSSCCCEEEECTTSSEEEEECS----SSCEEEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred --cceEEECCcCCCeEEEEEecCCCeEEEEcC----CCeEEEEECCCCcE--EEEecccccccccccCceEEEEECCCCC
Confidence 1222232333333333 9999987764433 34689999987641 111211110 11234455544466
Q ss_pred EEEEEEeCCceeEEEEECCCCceeeee----CCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 366 LIVHYIQNVRSVMDLHDLNTGKRLHSF----PLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 366 l~~~~~~~~~~~l~~~dl~~g~~~~~l----~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++++...+ ..+++||+.+++....+ ....+.|..+.+++++..++ +.+.. ..+.+|++
T Consensus 312 ~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D---~~i~iW~~ 373 (380)
T 3iz6_a 312 LLFAGYSN--GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC-TGSWD---KNLKIWAF 373 (380)
T ss_dssp EEEEECTT--SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE-EECTT---SCEEEEEC
T ss_pred EEEEEECC--CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE-EeeCC---CCEEEEec
Confidence 66666555 47999999888766555 22356677888899887544 43332 36888888
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-09 Score=117.32 Aligned_cols=126 Identities=20% Similarity=0.130 Sum_probs=83.9
Q ss_pred EEeEEEEEecccc---CCCCCcEEEEecCCCCCcC-CccccHHHHHHHHhcCeEEEEEecccCC-CCCchhhhccccccC
Q psy4818 471 RVPMYIIHRVGAL---RNRRNPVIIYGYGGYGVSV-LPTFSISRCMFLRHFNGIYAIPNIRGGG-ELGEDWHNAGRLLKK 545 (734)
Q Consensus 471 ~i~~~~~~p~~~~---~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~~-~~g~~~~~~~~~~~~ 545 (734)
.+.+.++.|.... .+++.|+|||+|||..... ...+... .+..+.|++|+.+|||.+. ||...-. ....+
T Consensus 111 cL~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~--~la~~~~~vvv~~~YRl~~~Gfl~~~~---~~~~~ 185 (574)
T 3bix_A 111 CLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGS--VLASYGNVIVITVNYRLGVLGFLSTGD---QAAKG 185 (574)
T ss_dssp CCEEEEEEEC--------CCEEEEEECCCSSSSSCCGGGSCCH--HHHHHHTCEEEEECCCCHHHHHCCCSS---SSCCC
T ss_pred CCEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCch--hhhccCCEEEEEeCCcCcccccCcCCC---CCCCC
Confidence 3667788887542 2356899999999854332 2234332 3333347999999999642 1111000 01122
Q ss_pred CCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCC---CceeEEEEcCC
Q psy4818 546 QNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRP---ELYGAALILVG 601 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~~~a~v~~~~ 601 (734)
...+.|+.++++|+.++- -.||+||.|+|.|+||.+++.++.... .+|+.+|+.+|
T Consensus 186 n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg 247 (574)
T 3bix_A 186 NYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSG 247 (574)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcC
Confidence 345889999999998752 269999999999999999999887543 68999998876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-06 Score=89.99 Aligned_cols=239 Identities=10% Similarity=0.040 Sum_probs=140.9
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...+..+.|||||++|+-... ...|++++...+....... .........|+++++.|+....+.
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~-----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---------- 150 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSW-----DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK---------- 150 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS----------
T ss_pred CCCEEEEEECCCCCEEEEEcc-----cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC----------
Confidence 345889999999999886543 2368999988776432221 111224678899999887665432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.+.++++.... ...............+.+++++...++.... ....|.+||+.++. ....+
T Consensus 151 ------~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~--------~~~~~ 211 (340)
T 4aow_A 151 ------TIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCK--------LKTNH 211 (340)
T ss_dssp ------CEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTE--------EEEEE
T ss_pred ------eEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEEEEEc--CCCEEEEEECCCCc--------eeeEe
Confidence 46666665432 1222222233355678899887644333222 22578999998721 12222
Q ss_pred eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeE
Q psy4818 300 IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378 (734)
Q Consensus 300 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 378 (734)
.......... |+|+|+.|+..+. +..|.++|+.+.. ....+... ..+..+.+.+++.++... .+ ..|
T Consensus 212 ~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~---~~~~~~~~--~~v~~~~~~~~~~~~~~~-~d--~~i 279 (340)
T 4aow_A 212 IGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGK---HLYTLDGG--DIINALCFSPNRYWLCAA-TG--PSI 279 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTE---EEEEEECS--SCEEEEEECSSSSEEEEE-ET--TEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCc---eeeeecCC--ceEEeeecCCCCceeecc-CC--CEE
Confidence 2222233333 8999987765443 3569999997654 12222222 334555555545555544 34 469
Q ss_pred EEEECCCCceeeeeCC---------CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 379 DLHDLNTGKRLHSFPL---------DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 379 ~~~dl~~g~~~~~l~~---------~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++||+.++..+..+.. ....|..+.++++++.++ +.+.. ..+++||+
T Consensus 280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D---g~v~iW~~ 335 (340)
T 4aow_A 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF-AGYTD---NLVRVWQV 335 (340)
T ss_dssp EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE-EEETT---SCEEEEEE
T ss_pred EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE-EEeCC---CEEEEEeC
Confidence 9999976665444432 234577888899887554 43333 36889998
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-07 Score=96.30 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=93.3
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc--ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV--KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~--~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+++++++++.++-.. .. .+|+++|+++++.+....... ....++|+|||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~-~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--------------- 63 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN-YP----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--------------- 63 (349)
T ss_dssp CCCCCTTCEEEEEEE-TT----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT---------------
T ss_pred cccccCCCEEEEEeC-CC----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC---------------
Confidence 456788887655433 22 379999999998653322121 24689999999988776521
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCC----CeeEEEEEEecCCcEEEEEEec--------CCCCceEEEEeCCCCCCCccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNG----RSLGLHSEVTDCGRYLLVSTSN--------NTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~----~~~~~~~~~SpDG~~l~~~~~~--------~~~~~~i~~~d~~~~~~~~l~ 291 (734)
...|+++++.++.. +........ ......+.|||||++|++.... ......|+++|++++....
T Consensus 64 ~~~i~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-- 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-- 139 (349)
T ss_dssp TTEEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--
T ss_pred CCcEEEEeCCCCcE--EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--
Confidence 23789999876532 122222111 0112357999999999887632 0012589999998732110
Q ss_pred CCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 292 GKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 292 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
... .......... .|+|||+ +|+.++ .|+++|+++++
T Consensus 140 ---~~~-~~~~~~~~~~~~~s~dg~-l~~~~~------~i~~~d~~~~~ 177 (349)
T 1jmx_B 140 ---PVR-TFPMPRQVYLMRAADDGS-LYVAGP------DIYKMDVKTGK 177 (349)
T ss_dssp ---CSE-EEECCSSCCCEEECTTSC-EEEESS------SEEEECTTTCC
T ss_pred ---eee-eccCCCcccceeECCCCc-EEEccC------cEEEEeCCCCc
Confidence 111 1111111112 3899998 766321 29999987765
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-07 Score=95.61 Aligned_cols=239 Identities=9% Similarity=0.003 Sum_probs=132.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++.|+|||++|+|+...++ .|+.++. +|+............+++|++||+ |+.+.. .
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~----~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~---------------~ 105 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGR----RVLGWRE-DGTVDVLLDATAFTNGNAVDAQQR-LVHCEH---------------G 105 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTT----EEEEEET-TSCEEEEEESCSCEEEEEECTTSC-EEEEET---------------T
T ss_pred ccCCeEeCCCCEEEEEECCCC----EEEEEeC-CCCEEEEeCCCCccceeeECCCCC-EEEEEC---------------C
Confidence 568999999999888754433 5888898 454322122222236789999998 544432 1
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCC--eeEEEEEEecCCcEEEEEEec-C-------------CCCceEEEEeCCCCCC
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGR--SLGLHSEVTDCGRYLLVSTSN-N-------------TQGSDLHYFDLHSLPD 287 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~--~~~~~~~~SpDG~~l~~~~~~-~-------------~~~~~i~~~d~~~~~~ 287 (734)
...|++++.+ +. ...+....... ....++.++|||+. +++... + .....||++|.+++.
T Consensus 106 ~~~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~dG~l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~- 180 (305)
T 3dr2_A 106 RRAITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVARDGAI-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP- 180 (305)
T ss_dssp TTEEEEECTT-SC--EEEEECEETTEECSCCCCEEECTTSCE-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-
T ss_pred CCEEEEECCC-CC--EEEEEeccCCCccCCCCCEEECCCCCE-EEeCcCCCccccccccccccccCCCeEEEEcCCCCc-
Confidence 2367777764 21 11121111110 01235789999984 443110 0 012579999987632
Q ss_pred CcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCC--CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCC
Q psy4818 288 GKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKN--APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANN 364 (734)
Q Consensus 288 ~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 364 (734)
+..+. +...... .|+|||+.||+..... ....+|+++++++..... ..++..........+....++
T Consensus 181 --------~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~-~~~~~~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 181 --------LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHD-RRHFASVPDGLPDGFCVDRGG 250 (305)
T ss_dssp --------CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEE-EEEEECCSSSCCCSEEECTTS
T ss_pred --------EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccC-CeEEEECCCCCCCeEEECCCC
Confidence 22232 2222222 3899999888875432 113579999886532100 112211111122334444445
Q ss_pred EEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+++.. . ..|++++. +|+.+..+..+.+ +..+.++++++.++++.+. .+|.+++
T Consensus 251 ~lwv~~-~---~gv~~~~~-~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 251 WLWSSS-G---TGVCVFDS-DGQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp CEEECC-S---SEEEEECT-TSCEEEEEECSSC-CCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred CEEEec-C---CcEEEECC-CCCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 666554 2 24999998 6887777766643 4455566788888876543 6888775
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=108.39 Aligned_cols=246 Identities=10% Similarity=0.019 Sum_probs=145.1
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC--ccccc-ccccccCeeEEEcC--CcEEEEEEEecCCCCC
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK--DYPEV-LKNVKFPSISWTHD--HKGFFYNQYCDINGTA 214 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~--~~~~~-~~~~~~~~~~wSpD--g~~l~y~~~~~~~~~~ 214 (734)
+...+..++|||||++|+.+.. + ..|++||+.++. .+... .....+..+.|+|+ |+.|+....+.
T Consensus 8 H~~~V~~l~~s~dg~~latg~~-d----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg----- 77 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSS-D----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG----- 77 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEET-T----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS-----
T ss_pred CcceeEEEEECCCCCeEEEEEC-C----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC-----
Confidence 3455889999999999886653 2 369999987543 22211 12223468899998 88887776433
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC--CcEEEEEEecCCCCceEEEEeCCCCCCCcccC
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC--GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
.|++|++.++.... +.....+...+..+.|+|+ |+.++.... ...|.+||+.++..
T Consensus 78 -----------~I~vwd~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~----dg~I~vwdl~~~~~----- 135 (753)
T 3jro_A 78 -----------KVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVASS----DGKVSVVEFKENGT----- 135 (753)
T ss_dssp -----------CEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCSEEEEEET----TSEEEEEECCSSSC-----
T ss_pred -----------eEEEEECCCCcccc--cccccCCCCCeEEEEECCCCCCCEEEEEeC----CCcEEEEEeecCCC-----
Confidence 58888887653212 2222223445678999999 888875432 25899999987311
Q ss_pred CCCceeeeccccceEEE-EEe-------------cCCeEEEEeCCCCCCceEEEEecCCCCCC-CceEeecCCCCceeEE
Q psy4818 293 KFPLKTVIPGMDHHHEI-IAN-------------NGPELIVKTTKNAPKGKVVTINLNNPCEK-NWKTLIPEDENRTLDV 357 (734)
Q Consensus 293 ~~~~~~l~~~~~~~~~~-~s~-------------dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~ 357 (734)
.....+.......... |+| +++.++..+.. +.|..+|+.++... .....+... ...+..
T Consensus 136 -~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~ 209 (753)
T 3jro_A 136 -TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD----NLVKIWKYNSDAQTYVLESTLEGH-SDWVRD 209 (753)
T ss_dssp -CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT----SCEEEEEEETTTTEEEEEEEECCC-SSCEEE
T ss_pred -cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC----CeEEEEeccCCcccceeeeeecCC-CCcEEE
Confidence 1111222222222333 777 57777665543 35888888664310 011122222 344556
Q ss_pred EEEeeC---CEEEEEEEeCCceeEEEEECCCCcee---eeeC--CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 358 VAAVAN---NKLIVHYIQNVRSVMDLHDLNTGKRL---HSFP--LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 358 ~~~~~~---~~l~~~~~~~~~~~l~~~dl~~g~~~---~~l~--~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+..+ +.++++...++ .|++||+.+++.. .... ...+.+..+.+++++..++.. +. -+.++.||+
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~---Dg~I~vwd~ 283 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-GG---DNKVTLWKE 283 (753)
T ss_dssp EEECCCCSSSEEEEEEESSS--CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE-CS---SSCEECCBC
T ss_pred EEeccCCCCCCEEEEEecCC--EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE-cC---CCEEEEEec
Confidence 666655 67777777664 6888998766421 1111 124556678888888765543 32 246888887
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-06 Score=103.62 Aligned_cols=209 Identities=10% Similarity=0.010 Sum_probs=123.6
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
.+..++|||||++||..... ..|++||..+++.+........+..++|+| |+.|+-...+
T Consensus 19 ~V~~lafspdg~~lAsgs~D-----g~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D-------------- 78 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVT-----GEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK-------------- 78 (902)
T ss_dssp CEEEEEEETTTTEEEEEETT-----SEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETT--------------
T ss_pred CcEEEEECCCCCEEEEEeCC-----CEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc--------------
Confidence 47889999999999976542 379999998876433222222346899999 8866555432
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc---eee
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL---KTV 299 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~---~~l 299 (734)
..|.+|++.++. .+..+.. ...+..+.|+|||++|+.... ...|.+||+.++.........-+ ..+
T Consensus 79 --~~v~lWd~~~~~--~~~~~~~---~~~V~~v~~sp~g~~l~sgs~----dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 79 --DTVYVLSLYSQK--VLTTVFV---PGKITSIDTDASLDWMLIGLQ----NGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp --CEEEEEETTTCS--EEEEEEC---SSCEEEEECCTTCSEEEEEET----TSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred --CeEEEEECCCCc--EEEEEcC---CCCEEEEEECCCCCEEEEEcC----CCcEEEEECCCCccccceecccccccccc
Confidence 279999998753 2222322 235678999999999986432 25799999987311000000000 000
Q ss_pred eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC----------------CCCceeEEEEEee
Q psy4818 300 IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE----------------DENRTLDVVAAVA 362 (734)
Q Consensus 300 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~ 362 (734)
.......... |+|++..+++.+.. +..+ +||+.++.. ...+..+ .....+..+.+..
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~---dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYE---YVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECS---SCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeC---CCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 1111222233 89865444444433 3458 999987541 1222211 0013355666655
Q ss_pred CCEEEEEEEeCCceeEEEEECCCCceee
Q psy4818 363 NNKLIVHYIQNVRSVMDLHDLNTGKRLH 390 (734)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~dl~~g~~~~ 390 (734)
++..+++...++ .|.+||+.+|+.+.
T Consensus 222 dg~~lasgs~Dg--~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 222 NSLHIITIHEDN--SLVFWDANSGHMIM 247 (902)
T ss_dssp TSSEEEEEETTC--CEEEEETTTCCEEE
T ss_pred CCCEEEEEECCC--eEEEEECCCCcEEE
Confidence 566777776664 79999998887644
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.7e-07 Score=96.12 Aligned_cols=207 Identities=12% Similarity=0.101 Sum_probs=115.7
Q ss_pred EEeeEEeCCCC--cEEEEEEeCCCCceEEEEEEECCCCCccc--------------------------------------
Q psy4818 143 ALKLYAFSDNG--KHFAYCLSKSGSDWNTLHIKDVDTGKDYP-------------------------------------- 182 (734)
Q Consensus 143 ~~~~~~~SPDG--~~la~~~~~~g~~~~~l~v~dl~~g~~~~-------------------------------------- 182 (734)
.+..++|+|++ .+|+.+.. . ..|++||+.++....
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~-d----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTN-D----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEEC-S----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred ceEEEEEcCCCCcceEEEeCC-C----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 37789999999 67776543 3 358888876643210
Q ss_pred ---ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEE-----ecCCCCeeEEE
Q psy4818 183 ---EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV-----EFPNGRSLGLH 254 (734)
Q Consensus 183 ---~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~-----~~~~~~~~~~~ 254 (734)
.......+..++|+|||+.|+.. .+. .|.+|++.+... ...++ ....+...+..
T Consensus 170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~----------------~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 170 RIFANAHTYHINSISINSDYETYLSA-DDL----------------RINLWHLEITDR-SFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp EEECSCCSSCCCEEEECTTSSEEEEE-CSS----------------EEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEE
T ss_pred EEeccCCCcceEEEEEcCCCCEEEEe-CCC----------------eEEEEECCCCCc-eeeeeecccccccccCcceEE
Confidence 01111234688999999988765 322 688888874221 11111 11123335678
Q ss_pred EEEecCC-cEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc------------ceEEE-EEecCCeEEEE
Q psy4818 255 SEVTDCG-RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD------------HHHEI-IANNGPELIVK 320 (734)
Q Consensus 255 ~~~SpDG-~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~------------~~~~~-~s~dg~~l~~~ 320 (734)
+.|+|+| +.|+.... ...|.+||+.++.... .....+..... ..... |+|+|+.|+..
T Consensus 232 ~~~~p~~~~~l~s~~~----dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 303 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSS----KGTIRLCDMRASALCD----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR 303 (447)
T ss_dssp EEECSSCTTEEEEEET----TSCEEEEETTTCSSSC----TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred EEECCCCCcEEEEEeC----CCeEEEEECcCCcccc----ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence 9999999 77664432 2579999998732100 00122222111 23333 99999877754
Q ss_pred eCCCCCCceEEEEecCC-CCCCCceEeecCCC-Cc---------e---eEEEEEeeCCEEEEEEEeCCceeEEEEECCCC
Q psy4818 321 TTKNAPKGKVVTINLNN-PCEKNWKTLIPEDE-NR---------T---LDVVAAVANNKLIVHYIQNVRSVMDLHDLNTG 386 (734)
Q Consensus 321 s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~-~~---------~---~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g 386 (734)
+. ..|..||+.+ +.. ...+..+.. .. . ...+.+..++..+++...+ ..|++||+.++
T Consensus 304 ~~-----~~v~iwd~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d--g~v~iwd~~~~ 374 (447)
T 3dw8_B 304 DY-----LSVKVWDLNMENRP--VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN--NFFRMFDRNTK 374 (447)
T ss_dssp ES-----SEEEEEETTCCSSC--SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST--TEEEEEETTTC
T ss_pred eC-----CeEEEEeCCCCccc--cceeeccccccccccccccccccccceEEEECCCCCEEEEeccC--CEEEEEEcCCC
Confidence 33 4689999875 331 222222210 00 0 0013344435555666555 47999999887
Q ss_pred cee
Q psy4818 387 KRL 389 (734)
Q Consensus 387 ~~~ 389 (734)
+.+
T Consensus 375 ~~~ 377 (447)
T 3dw8_B 375 RDI 377 (447)
T ss_dssp CEE
T ss_pred cce
Confidence 754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-06 Score=88.45 Aligned_cols=244 Identities=7% Similarity=-0.016 Sum_probs=128.5
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc--cccc-c--cccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD--YPEV-L--KNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~--~~~~-~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
..+..+.|||| +||-... . ..|++||+.++.. +... . ....+..++|+|||+.|+-...+.
T Consensus 15 ~~v~~~~~s~~--~las~~~-D----~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~------- 80 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGST-D----RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS------- 80 (330)
T ss_dssp SCEEEEEEETT--EEEEEES-S----SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-------
T ss_pred CceeeeccCCC--EEEEEcC-C----CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-------
Confidence 34678899998 5554432 2 3699999987642 1111 1 122346799999999887666433
Q ss_pred CcccccCCcEEEEEECCCCCC---CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQD---KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~---~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.+|++..... ....+.....+...+..++|||||++|+-... ...|++||+...... .
T Consensus 81 ---------~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~----D~~v~iwd~~~~~~~-~--- 143 (330)
T 2hes_X 81 ---------TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR----DKSVWIWETDESGEE-Y--- 143 (330)
T ss_dssp ---------CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET----TSCEEEEECCTTCCC-C---
T ss_pred ---------cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC----CCEEEEEeccCCCCC-e---
Confidence 577777753211 11122222223445678999999999874332 257999998541110 0
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC--CEEEEEE
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN--NKLIVHY 370 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~l~~~~ 370 (734)
.....+.......... |+|+++.|+-.+.. ..|..|++.++... ....+... ...+..+.+..+ ...+++.
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----~~i~iW~~~~~~~~-~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYD----DTVRIWKDYDDDWE-CVAVLNGH-EGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp EEEEEECCCSSCEEEEEECSSSSEEEEEETT----SCEEEEEEETTEEE-EEEEECCC-SSCEEEEEECCSSSSCEEEEE
T ss_pred EEEEEeccCCCceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCee-EEEEccCC-CCcEEEEEecCCCCeeEEEEE
Confidence 0011122222223333 89998876654432 34777776544210 11222222 233444545443 3456666
Q ss_pred EeCCceeEEEEECCCC--------ceeeeeCC-CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 371 IQNVRSVMDLHDLNTG--------KRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 371 ~~~~~~~l~~~dl~~g--------~~~~~l~~-~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+ ..|.+|++.++ .....+.. ....+..+.+++++ ++++.+.. ..+.++|.
T Consensus 218 s~D--~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~d---g~v~iw~~ 278 (330)
T 2hes_X 218 SDD--STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGAD---GVLAVYEE 278 (330)
T ss_dssp ETT--SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETT---SCEEEEEE
T ss_pred eCC--CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCC---CEEEEEEc
Confidence 666 36778877433 12223332 34556677777543 34444332 36778887
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-06 Score=90.48 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=141.4
Q ss_pred EeeEEeC----CCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cc-----------cccCeeEEEcCCcEEEEEEE
Q psy4818 144 LKLYAFS----DNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KN-----------VKFPSISWTHDHKGFFYNQY 207 (734)
Q Consensus 144 ~~~~~~S----PDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~-----------~~~~~~~wSpDg~~l~y~~~ 207 (734)
-.++.+| |||++++.+....+ ++.|+|..+.+.+.... .+ .+...+..|+++..+++...
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETT----EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CceeEEccccCCCCCEEEEEEccCC----eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 3478999 79999887665443 68899999888654211 11 12346777888876655442
Q ss_pred ecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCC
Q psy4818 208 CDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 287 (734)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~ 287 (734)
+ ..+|++++..+.. ...+..... ..+..+..|+|||+++++.... .+.|.++|++++.
T Consensus 318 -~--------------~g~v~~vd~~~~~--~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~k- 375 (567)
T 1qks_A 318 -E--------------TGKILLVDYTDLN--NLKTTEISA-ERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGK- 375 (567)
T ss_dssp -T--------------TTEEEEEETTCSS--EEEEEEEEC-CSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTE-
T ss_pred -C--------------CCeEEEEecCCCc--cceeeeeec-cccccCceECCCCCEEEEEeCC---CCeEEEEECCCCc-
Confidence 1 2378888875432 112222211 1245578899999998876532 3689999998832
Q ss_pred CcccCCCCceeeec--c----ccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCC--CCceE--eecCCCCceeEE
Q psy4818 288 GKISGKFPLKTVIP--G----MDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCE--KNWKT--LIPEDENRTLDV 357 (734)
Q Consensus 288 ~~l~~~~~~~~l~~--~----~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~--l~~~~~~~~~~~ 357 (734)
+ ...+. + ...+...+.|+++.+|++++.. ...|.+++.++.+. ..|+. .++......+.-
T Consensus 376 --l------~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i 445 (567)
T 1qks_A 376 --L------VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI 445 (567)
T ss_dssp --E------EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred --E------EEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE
Confidence 1 11111 1 1122333577777777666543 34588888875321 11332 222211111111
Q ss_pred EEEeeCCEEEEEEEeCC----ceeEEEEECCCC-----ce-eeeeC------CC--CceEEeeccCcccceEEEEE-ecC
Q psy4818 358 VAAVANNKLIVHYIQNV----RSVMDLHDLNTG-----KR-LHSFP------LD--LGQITHISGRRKYNEVFYGF-TSF 418 (734)
Q Consensus 358 ~~~~~~~~l~~~~~~~~----~~~l~~~dl~~g-----~~-~~~l~------~~--~g~v~~~~~~~d~~~l~~~~-ss~ 418 (734)
...+++.++++...-+. ...|.++|+++. +. .+.+. ++ ...+..+.++++|++++++. +.-
T Consensus 446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~ 525 (567)
T 1qks_A 446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK 525 (567)
T ss_dssp ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCC
Confidence 12234346665442221 347999998655 21 12332 11 22455788899999999874 322
Q ss_pred CCCceEEEEeC
Q psy4818 419 LQPGTIYHCNI 429 (734)
Q Consensus 419 ~~P~~~~~~d~ 429 (734)
.....|.++|.
T Consensus 526 ~~~~~i~v~D~ 536 (567)
T 1qks_A 526 DQESALVVVDD 536 (567)
T ss_dssp TSCCEEEEEET
T ss_pred CCCCcEEEEEC
Confidence 34578999998
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-06 Score=91.00 Aligned_cols=205 Identities=11% Similarity=0.116 Sum_probs=120.9
Q ss_pred EEEeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--------------cccccCeeEEEc-CCcEEEEE
Q psy4818 142 TALKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--------------KNVKFPSISWTH-DHKGFFYN 205 (734)
Q Consensus 142 ~~~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--------------~~~~~~~~~wSp-Dg~~l~y~ 205 (734)
..+..++||| ||++||.... . ..|++||+.+++...... ....+..+.|+| +++.|+..
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGS-D----GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEET-T----SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcC-C----CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3478899999 9999987654 2 359999999887533211 222346889999 55555544
Q ss_pred EEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC---CcEEEEEEecCCCCceEEEEeC
Q psy4818 206 QYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC---GRYLLVSTSNNTQGSDLHYFDL 282 (734)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~~i~~~d~ 282 (734)
..+ ..|.+|++.+... +..+... .....+.++|+ +.+++.... ...|++||+
T Consensus 119 ~~d----------------~~i~iwd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~d~ 173 (408)
T 4a11_B 119 SFD----------------KTLKVWDTNTLQT--ADVFNFE---ETVYSHHMSPVSTKHCLVAVGTR----GPKVQLCDL 173 (408)
T ss_dssp ETT----------------SEEEEEETTTTEE--EEEEECS---SCEEEEEECSSCSSCCEEEEEES----SSSEEEEES
T ss_pred eCC----------------CeEEEeeCCCCcc--ceeccCC---CceeeeEeecCCCCCcEEEEEcC----CCeEEEEeC
Confidence 432 2688999887542 2233322 23456788875 446665432 257999999
Q ss_pred CCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec-------------
Q psy4818 283 HSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP------------- 348 (734)
Q Consensus 283 ~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~------------- 348 (734)
.++. ....+.......... |+|+++.+++.+..+ ..|..+|+.+... ....+-.
T Consensus 174 ~~~~--------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 174 KSGS--------CSHILQGHRQEILAVSWSPRYDYILATASAD---SRVKLWDVRRASG-CLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp SSSC--------CCEEECCCCSCEEEEEECSSCTTEEEEEETT---SCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSS
T ss_pred CCcc--------eeeeecCCCCcEEEEEECCCCCcEEEEEcCC---CcEEEEECCCCCc-ccccccccccccceeecccc
Confidence 8731 222232222333333 899998765555432 4588899865431 1111100
Q ss_pred CCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceee
Q psy4818 349 EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH 390 (734)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~ 390 (734)
......+..+.+..++..+++...+ ..|.+||+.+++...
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTD--NRMRLWNSSNGENTL 281 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETT--SCEEEEETTTCCBCC
T ss_pred ccccCceeEEEEcCCCCEEEEecCC--CeEEEEECCCCccce
Confidence 1112344555555545566666555 469999998877543
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=108.00 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=79.5
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHH-HHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCM-FLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
+...|+||++||..+.. ...|...+.. ++.+.||.|+++|+||.|... +.... ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~---~~~~~-~~~~~~~~dl~~li~~L~~~~ 141 (452)
T 1bu8_A 67 QLDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE---YTQAS-YNTRVVGAEIAFLVQVLSTEM 141 (452)
T ss_dssp CTTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSC---HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCc---hhHhH-hhHHHHHHHHHHHHHHHHHhc
Confidence 35678999999987654 2345443334 444349999999999965432 11110 111123457777788886543
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
-++.+++.|+|||+||.+++.++.++|++++++|...|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 3567899999999999999999999999999999877643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.5e-07 Score=92.08 Aligned_cols=243 Identities=11% Similarity=-0.004 Sum_probs=131.7
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc--ccc-cccccccCeeEEEc--CCcEEEEEEEecCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD--YPE-VLKNVKFPSISWTH--DHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~--~~~-~~~~~~~~~~~wSp--Dg~~l~y~~~~~~~~~~~ 215 (734)
...+..++|||||++||-... ...|++||+.++.. +.. ......+..++|+| +|+.|+-...+.
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~-----D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------ 81 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSS-----DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR------ 81 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEET-----TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS------
T ss_pred cCeEEEeeEcCCCCEEEEEeC-----CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC------
Confidence 345788999999999986543 24799999988752 111 11122346789986 477776665432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC--CcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC--GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
.|.+|++.++.......+. .+...+..++|+|| |++|+... ....|.+||+.++....
T Consensus 82 ----------~v~iWd~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~g~~lasgs----~D~~i~lwd~~~~~~~~---- 141 (316)
T 3bg1_A 82 ----------KVIIWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGLILACGS----SDGAISLLTYTGEGQWE---- 141 (316)
T ss_dssp ----------CEEEECCSSSCCCEEEEEC--CCSSCCCEEEECCTTTCSCEEEEC----SSSCEEEEEECSSSCEE----
T ss_pred ----------EEEEEECCCCcceEEEEcc--CCCCceEEEEECCCCCCcEEEEEc----CCCCEEEEecCCCCCcc----
Confidence 6888888765322222222 23334567899998 77776322 22578888887621100
Q ss_pred CCceeeecccc-ceEE-EEEecC-----------------CeEEEEeCCCCCCceEEEEecCCCCCCCceEe--ecCCCC
Q psy4818 294 FPLKTVIPGMD-HHHE-IIANNG-----------------PELIVKTTKNAPKGKVVTINLNNPCEKNWKTL--IPEDEN 352 (734)
Q Consensus 294 ~~~~~l~~~~~-~~~~-~~s~dg-----------------~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~ 352 (734)
......... .... .|+|++ +.|+ .. +.+..|.+||+.+.. .++.+ +... .
T Consensus 142 --~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg---s~D~~v~lWd~~~~~--~~~~~~~l~~h-~ 212 (316)
T 3bg1_A 142 --VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SG---GCDNLIKLWKEEEDG--QWKEEQKLEAH-S 212 (316)
T ss_dssp --ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE-CC---BTTSBCCEEEECTTS--CEEEEECCBCC-S
T ss_pred --eeeeeccccCCcceEEEccccCCccccccccccCccccceEE-Ee---cCCCeEEEEEeCCCC--ccceeeecccC-C
Confidence 000111111 1111 266652 3333 22 223457777775432 12221 2222 2
Q ss_pred ceeEEEEEeeCC----EEEEEEEeCCceeEEEEECCCC---ce-eeeeCCCCceEEeeccCcccceEEEEEecCCCCceE
Q psy4818 353 RTLDVVAAVANN----KLIVHYIQNVRSVMDLHDLNTG---KR-LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTI 424 (734)
Q Consensus 353 ~~~~~~~~~~~~----~l~~~~~~~~~~~l~~~dl~~g---~~-~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~ 424 (734)
..+..+.+..++ .++++...+ ..|.+|++.++ +. .+.+....+.+..+.++|++..++.... . ..+
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D--~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D---~~v 286 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQD--GRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG-D---NKV 286 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETT--CEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES-S---SCE
T ss_pred CceEEEEecCCCCCCCceEEEEcCC--CeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-C---CeE
Confidence 345555554422 567777766 47888998652 11 1223222456778889999876654432 2 246
Q ss_pred EEEeC
Q psy4818 425 YHCNI 429 (734)
Q Consensus 425 ~~~d~ 429 (734)
.+|+.
T Consensus 287 ~lw~~ 291 (316)
T 3bg1_A 287 TLWKE 291 (316)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.8e-07 Score=100.58 Aligned_cols=246 Identities=11% Similarity=0.012 Sum_probs=138.5
Q ss_pred EEeeEEeCCCC---------cEEEEEEeCC--------------CCceEEEEEEECCCCCccc---cccc--ccccCeeE
Q psy4818 143 ALKLYAFSDNG---------KHFAYCLSKS--------------GSDWNTLHIKDVDTGKDYP---EVLK--NVKFPSIS 194 (734)
Q Consensus 143 ~~~~~~~SPDG---------~~la~~~~~~--------------g~~~~~l~v~dl~~g~~~~---~~~~--~~~~~~~~ 194 (734)
.+..++|+|++ ++||.+.... ++....|.+||+++++... .++. ...+..++
T Consensus 135 ~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~ 214 (524)
T 2j04_B 135 LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLK 214 (524)
T ss_dssp --CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEE
T ss_pred ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEE
Confidence 36678888887 7888766432 3445689999998876421 1111 12236789
Q ss_pred EEcC------CcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC---------CeeEEecCCCCeeEEEEEEec
Q psy4818 195 WTHD------HKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK---------DIPVVEFPNGRSLGLHSEVTD 259 (734)
Q Consensus 195 wSpD------g~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~---------~~~v~~~~~~~~~~~~~~~Sp 259 (734)
|+|+ ++.|+-...+. .|.+|++.++... ....+.. +...+..++|+|
T Consensus 215 wsp~~~~~~~~~~LAs~s~Dg----------------tvrlWd~~~~~~~~~~~~~~~~p~~~l~~--h~~~v~sv~~s~ 276 (524)
T 2j04_B 215 WHEGCHAPHLVGCLSFVSQEG----------------TINFLEIIDNATDVHVFKMCEKPSLTLSL--ADSLITTFDFLS 276 (524)
T ss_dssp ECSSCCCSSSSCEEEEEETTS----------------CEEEEECCCCSSSSSEEECCCSCSEEECC--TTTCEEEEEESS
T ss_pred ECCCCCCCCCCceEEEEecCC----------------eEEEEEcCCCccccccceeecCceEEEEc--CCCCEEEEEecC
Confidence 9997 45565555332 5788888654321 0112222 233567899998
Q ss_pred CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE---EEecCCeEEEEeCCCCCCceEEEEecC
Q psy4818 260 CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI---IANNGPELIVKTTKNAPKGKVVTINLN 336 (734)
Q Consensus 260 DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~---~s~dg~~l~~~s~~~~~~~~l~~~d~~ 336 (734)
++ .|+ +.+ ....|.+||+.++. .+...+..+....... ++++|..+++.+.. +..|.+||+.
T Consensus 277 ~~-~la-sgs---~DgtV~lWD~~~~~-------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~---D~tvklWD~~ 341 (524)
T 2j04_B 277 PT-TVV-CGF---KNGFVAEFDLTDPE-------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV---DGYFYIFNPK 341 (524)
T ss_dssp SS-EEE-EEE---TTSEEEEEETTBCS-------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEET---TSEEEEECGG
T ss_pred CC-eEE-EEe---CCCEEEEEECCCCC-------CceEEeecccccEEEEEEEcCCCCCeEEEEecc---CCeEEEEECC
Confidence 75 454 322 23689999998731 1222222222333332 46676344444333 3569999987
Q ss_pred CCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEe
Q psy4818 337 NPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~s 416 (734)
++.. ...+..+.....+..+.+..++..+++...+ ..+.+||+.++..+..+....+.|.+++++|++..++ +.+
T Consensus 342 ~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d--~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~-Sgs 416 (524)
T 2j04_B 342 DIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA--SSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL-AGS 416 (524)
T ss_dssp GHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECSS--SEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCE-EEE
T ss_pred CCCc--ccccccccccCcccceEeCCCcCeEEEeCCC--CcEEEEECcccccceeeecCCCceEEEEeCCCCCeEE-EEE
Confidence 6431 1223222211112233344434455555444 4699999988876566665667788999999987554 443
Q ss_pred cCCCCceEEEEeC
Q psy4818 417 SFLQPGTIYHCNI 429 (734)
Q Consensus 417 s~~~P~~~~~~d~ 429 (734)
.. ..+.++|+
T Consensus 417 ~D---gtv~lwd~ 426 (524)
T 2j04_B 417 AD---GSLIITNA 426 (524)
T ss_dssp TT---TEEECCBS
T ss_pred CC---CEEEEEec
Confidence 33 46888887
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-08 Score=106.09 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=78.5
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHh-cCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH-FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
+...|+||++||..+.. ...|...+...|.+ .||.|+++|+||.|... +.... ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~---~~~~~-~~~~~~~~dl~~~i~~L~~~~ 141 (452)
T 1w52_X 67 QSSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAE---YTQAV-QNIRIVGAETAYLIQQLLTEL 141 (452)
T ss_dssp CTTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSC---HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccc---cHHHH-HhHHHHHHHHHHHHHHHHHhc
Confidence 45578999999976554 23354433344443 49999999999965432 11110 011122456777778876543
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
-++.+++.|+|||+||.+++.++.++|++++.+|...|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 142 SYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 3457899999999999999999999999999999877653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-05 Score=82.79 Aligned_cols=209 Identities=12% Similarity=0.062 Sum_probs=104.3
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECC-CCCCCCeeEEecCCCCeeEEEEEEecCCcEEE-EE
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLG-TEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLL-VS 267 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~-~~ 267 (734)
...++|||||+.||.+.. . .|.++++. ++.. +.+...+... ....+++||||++|+ +.
T Consensus 42 ~~~~a~spdg~~l~~~~~--------------~---~v~~~~~~~~g~~--~~~~~~~~~g-~~~~~~~spdg~~l~~~~ 101 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAM--------------K---KWSSFAVKSPTEI--VHEASHPIGG-HPRANDADTNTRAIFLLA 101 (365)
T ss_dssp CSEEEECTTSSEEEEEEB--------------T---EEEEEEEEETTEE--EEEEEEECCS-SGGGGCTTSCCEEEEEEE
T ss_pred CcEEEECCCCCEEEEEcc--------------c---eEEEEEECCCCCE--EEeeEeecCC-CCccEEECCCCCEEEEEE
Confidence 467899999998865542 1 57777765 3321 1122211000 112478999999754 33
Q ss_pred Ee------cCC----CCceEEEEeCCCCCCCcccCCCCceeee--ccccceEE-EEEecCCeEEEEeCCCCCCceEEEEe
Q psy4818 268 TS------NNT----QGSDLHYFDLHSLPDGKISGKFPLKTVI--PGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTIN 334 (734)
Q Consensus 268 ~~------~~~----~~~~i~~~d~~~~~~~~l~~~~~~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d 334 (734)
.+ ... ....+.+++++. .. .+. ...... ........ .|+|||+++|+. +.. ...|++++
T Consensus 102 ~~~~~~~~~~~~~~~~~g~v~v~~~~~-~g-~~~---~~~~~~~~~~~~~~~~~~~spdG~~l~~~-~~~--~~~v~~~~ 173 (365)
T 1jof_A 102 AKQPPYAVYANPFYKFAGYGNVFSVSE-TG-KLE---KNVQNYEYQENTGIHGMVFDPTETYLYSA-DLT--ANKLWTHR 173 (365)
T ss_dssp CSSTTCCEEEEEESSSCCEEEEEEECT-TC-CEE---EEEEEEECCTTCCEEEEEECTTSSEEEEE-ETT--TTEEEEEE
T ss_pred ecCCcceeccceeecCCceEEEEccCC-CC-cCc---ceEeeEEeCCCCcceEEEECCCCCEEEEE-cCC--CCEEEEEE
Confidence 32 010 224577777753 10 110 000111 01112222 399999987654 332 24688898
Q ss_pred cC-CCCCCCceEe--ec-CCCCceeEEEEEeeCC-EEEEEEEeCCceeEEEEECCCCcee---eeeC-CCC---c-----
Q psy4818 335 LN-NPCEKNWKTL--IP-EDENRTLDVVAAVANN-KLIVHYIQNVRSVMDLHDLNTGKRL---HSFP-LDL---G----- 397 (734)
Q Consensus 335 ~~-~~~~~~~~~l--~~-~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~~~dl~~g~~~---~~l~-~~~---g----- 397 (734)
++ +++ ...+ +. .........+.+..++ .+++....++.-.++.++.++|+.. +.+. .+. +
T Consensus 174 ~~~~g~---~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 250 (365)
T 1jof_A 174 KLASGE---VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp ECTTSC---EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred ECCCCC---EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccc
Confidence 87 554 2221 11 1102223444454434 5555433333233444455467642 2221 221 1
Q ss_pred ----eEEeec-cCcccceEEEEEecCC--CCceEEEEeC
Q psy4818 398 ----QITHIS-GRRKYNEVFYGFTSFL--QPGTIYHCNI 429 (734)
Q Consensus 398 ----~v~~~~-~~~d~~~l~~~~ss~~--~P~~~~~~d~ 429 (734)
.+..+. ++||++.++++..... .|..+.+|++
T Consensus 251 ~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 466788 8999988876543322 2457888887
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-05 Score=87.34 Aligned_cols=234 Identities=11% Similarity=0.083 Sum_probs=133.3
Q ss_pred EEeeEEeC--CCCcEEEEEEeCCCCceEEEEEEECCCCCcccc----------------------cccccccCeeEEEcC
Q psy4818 143 ALKLYAFS--DNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE----------------------VLKNVKFPSISWTHD 198 (734)
Q Consensus 143 ~~~~~~~S--PDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~----------------------~~~~~~~~~~~wSpD 198 (734)
.+..+.|+ ||+++|+.... . ..|++||+.++..... ...+....-..++++
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~-d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 279 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSR-D----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEET-T----SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE
T ss_pred ccEEEEEecCCCCCEEEEEcC-C----CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC
Confidence 35556666 68888776553 2 3699999988764321 011111123466889
Q ss_pred CcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEE
Q psy4818 199 HKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLH 278 (734)
Q Consensus 199 g~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~ 278 (734)
++.|+....+. .|+++++.+.. .+.....+...+..+.|+|||++|+.... ...|+
T Consensus 280 ~~~l~~~~~d~----------------~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----dg~i~ 335 (464)
T 3v7d_B 280 GNIVVSGSYDN----------------TLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASM----DTTIR 335 (464)
T ss_dssp TTEEEEEETTS----------------CEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEET----TSCEE
T ss_pred CCEEEEEeCCC----------------eEEEEECCCCc----EEEEecCCCCCEEEEEEcCCCCEEEEEeC----CCcEE
Confidence 98887766432 68889987653 22222233445678999999999875432 25799
Q ss_pred EEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEE
Q psy4818 279 YFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV 358 (734)
Q Consensus 279 ~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 358 (734)
+||+.++. ....+. +.......+..+++.++..+. +..|..+|+.+.. ........ ......
T Consensus 336 vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~l~s~s~----dg~v~vwd~~~~~---~~~~~~~~--~~~~~~ 397 (464)
T 3v7d_B 336 IWDLENGE--------LMYTLQ-GHTALVGLLRLSDKFLVSAAA----DGSIRGWDANDYS---RKFSYHHT--NLSAIT 397 (464)
T ss_dssp EEETTTTE--------EEEEEC-CCSSCEEEEEECSSEEEEEET----TSEEEEEETTTCC---EEEEEECT--TCCCEE
T ss_pred EEECCCCc--------EEEEEe-CCCCcEEEEEEcCCEEEEEeC----CCcEEEEECCCCc---eeeeecCC--CCccEE
Confidence 99998731 122222 222223334445666554443 3469999998754 12222222 222333
Q ss_pred EEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC-CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 359 AAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP-LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~-~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+..++.+++... + ..+++||+.+|+.++.+. ...+.+..+.++ ++.+++..+... ...++.+|.
T Consensus 398 ~~~~~~~~l~~~~-d--g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g-~~~i~~ldf 463 (464)
T 3v7d_B 398 TFYVSDNILVSGS-E--NQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDG-QSFLEILDF 463 (464)
T ss_dssp EEEECSSEEEEEE-T--TEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETT-EEEEEEEEC
T ss_pred EEEeCCCEEEEec-C--CeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCC-eEEEEEeec
Confidence 3333355666555 4 479999999998776533 335667677664 556666554432 233445443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7e-06 Score=85.83 Aligned_cols=233 Identities=10% Similarity=0.045 Sum_probs=140.8
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..+..++|||||++||...+. .+.+||+++++.+...... ......|+++++.++.+...
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~------~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------- 79 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLK------SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGV------------- 79 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSS------EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSS-------------
T ss_pred CceEEEEECCCCCEEEEEcCC------EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECC-------------
Confidence 347789999999999865431 2678998877643211111 23578899999988776532
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
...|.+|++.++.. +..+.. ...+..+.+++++..++ . ...|++||+.++. ..+ ..+..
T Consensus 80 --d~~v~iWd~~~~~~--~~~~~~---~~~v~~v~~~~~~~~~~--~-----~~~i~i~d~~~~~-~~~------~~~~~ 138 (355)
T 3vu4_A 80 --KEVVHIWDDVKKQD--VSRIKV---DAPVKDLFLSREFIVVS--Y-----GDVISVFKFGNPW-KRI------TDDIR 138 (355)
T ss_dssp --TTEEEEEETTTTEE--EEEEEC---SSCEEEEEECSSEEEEE--E-----TTEEEEEESSTTC-CBS------SCCEE
T ss_pred --ccEEEEEECCCCcE--EEEEEC---CCceEEEEEcCCEEEEE--E-----cCEEEEEECCCCc-eee------EEecc
Confidence 12789999876532 222222 22456788888753332 1 2579999998731 111 11111
Q ss_pred cccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCC-----C--------C-ceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 302 GMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCE-----K--------N-WKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 302 ~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-----~--------~-~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
......+++ +.+++.+.. ..+.|..+|+.++.. . . ...+..+ ...+..+.+..++.++
T Consensus 139 --~~~~~~~s~--~~la~~sg~--~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 139 --FGGVCEFSN--GLLVYSNEF--NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMV 210 (355)
T ss_dssp --EEEEEEEET--TEEEEEESS--CTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEE
T ss_pred --CCceEEEEc--cEEEEeCCC--cCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEE
Confidence 112223555 566665222 234688899876420 0 0 2223222 3445566666557777
Q ss_pred EEEEeCCcee-EEEEECCCCceeeeeC-C-CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 368 VHYIQNVRSV-MDLHDLNTGKRLHSFP-L-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 368 ~~~~~~~~~~-l~~~dl~~g~~~~~l~-~-~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++...++ . +.+||+.+|+.+..+. . ..+.+..+.++|+++.++.. +.. ..+.+||+
T Consensus 211 ~s~s~d~--~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~-s~d---~~v~iw~~ 269 (355)
T 3vu4_A 211 ATCSQDG--TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV-SDK---WTLHVFEI 269 (355)
T ss_dssp EEEETTC--SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE-ETT---CEEEEEES
T ss_pred EEEeCCC--CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE-ECC---CEEEEEEc
Confidence 7777764 5 8999999998888886 3 45678889999998765543 332 47889998
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-05 Score=77.06 Aligned_cols=207 Identities=10% Similarity=0.046 Sum_probs=126.1
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
...+++|+|++++|.++-... ..|++++++++......... ....+++++|+++.||++...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~------------- 99 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISE----PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ------------- 99 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTT----TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT-------------
T ss_pred cEEEEEEecCCCEEEEEECCC----CEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC-------------
Confidence 356899999999887765432 36999999877532211111 233678999998888876531
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI- 300 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~- 300 (734)
..+|++.++++... ..+.... ...-.+++++|++++|++.... .....|+++++++ .. ...+.
T Consensus 100 --~~~I~~~~~~g~~~--~~~~~~~--~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg-~~--------~~~~~~ 163 (267)
T 1npe_A 100 --LDRIEVAKMDGTQR--RVLFDTG--LVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDG-TN--------RRILAQ 163 (267)
T ss_dssp --TTEEEEEETTSCSC--EEEECSS--CSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTS-CC--------CEEEEC
T ss_pred --CCEEEEEEcCCCCE--EEEEECC--CCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCC-CC--------cEEEEE
Confidence 23788888865432 2222221 1133578999999988876532 1236899999876 21 11222
Q ss_pred ccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 301 PGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 301 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
.....-.. .++++++.||+.... ..+|+++++++.. ...++... ... .++.. +++.+|++... ...|+
T Consensus 164 ~~~~~P~gia~d~~~~~lyv~d~~---~~~I~~~~~~g~~---~~~~~~~~-~~P-~gi~~-d~~~lyva~~~--~~~v~ 232 (267)
T 1npe_A 164 DNLGLPNGLTFDAFSSQLCWVDAG---THRAECLNPAQPG---RRKVLEGL-QYP-FAVTS-YGKNLYYTDWK--TNSVI 232 (267)
T ss_dssp TTCSCEEEEEEETTTTEEEEEETT---TTEEEEEETTEEE---EEEEEECC-CSE-EEEEE-ETTEEEEEETT--TTEEE
T ss_pred CCCCCCcEEEEcCCCCEEEEEECC---CCEEEEEecCCCc---eEEEecCC-CCc-eEEEE-eCCEEEEEECC--CCeEE
Confidence 11111122 388888988886543 3579999997643 23343322 222 34444 45788875433 35799
Q ss_pred EEECCCCceeeeeC
Q psy4818 380 LHDLNTGKRLHSFP 393 (734)
Q Consensus 380 ~~dl~~g~~~~~l~ 393 (734)
++|..+|+.++.+.
T Consensus 233 ~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 233 AMDLAISKEMDTFH 246 (267)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEeCCCCCceEEEc
Confidence 99998898777775
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-05 Score=86.91 Aligned_cols=235 Identities=9% Similarity=0.060 Sum_probs=136.8
Q ss_pred eCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEE
Q psy4818 149 FSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 227 (734)
Q Consensus 149 ~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l 227 (734)
+++|+++|+-... . ..|++||+.+++.+.... ....+..+.|+||+ .|+....+ ..|
T Consensus 128 ~~~~~~~l~sgs~-d----g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d----------------g~i 185 (464)
T 3v7d_B 128 LQFEDNYVITGAD-D----KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD----------------RTV 185 (464)
T ss_dssp EEEETTEEEEEET-T----SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETT----------------SCE
T ss_pred EEECCCEEEEEcC-C----CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCC----------------CCE
Confidence 4457787775543 2 369999999998644222 22234678999998 44444322 268
Q ss_pred EEEECCCCCCCCeeEEecCCCCeeEEEEEEe--cCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC-CCC---------
Q psy4818 228 YYHVLGTEQDKDIPVVEFPNGRSLGLHSEVT--DCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG-KFP--------- 295 (734)
Q Consensus 228 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~--------- 295 (734)
.+|++.++. .+..+.. +...+..+.|+ +++++|+.... ...|.+||+.++....... ...
T Consensus 186 ~vwd~~~~~--~~~~~~~--h~~~v~~l~~~~~~~~~~l~s~s~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 186 RVWDIKKGC--CTHVFEG--HNSTVRCLDIVEYKNIKYIVTGSR----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EEEETTTTE--EEEEECC--CSSCEEEEEEEESSSCEEEEEEET----TSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EEEECCCCc--EEEEECC--CCCccEEEEEecCCCCCEEEEEcC----CCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 889987653 2223332 23345566776 67787775432 2578999998732111000 000
Q ss_pred ----ceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEE
Q psy4818 296 ----LKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYI 371 (734)
Q Consensus 296 ----~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (734)
......+.......++++++.++..+.. ..|..+|+.++. ....+... ...+..+.+..++..+++..
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----~~i~vwd~~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD----NTLIVWDVAQMK---CLYILSGH-TDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp GCTTEEEEECCCSSCEEEEEEETTEEEEEETT----SCEEEEETTTTE---EEEEECCC-SSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEccCccceEEEEcCCCCEEEEEeCC----CeEEEEECCCCc---EEEEecCC-CCCEEEEEEcCCCCEEEEEe
Confidence 0111122222233478888877766543 459999997654 22223322 23445555554455666666
Q ss_pred eCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 372 QNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 372 ~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+ ..|++||+.+|+.+..+......+..+.++ ++ .+++.+.. ..+..+|+
T Consensus 330 ~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~s~d---g~v~vwd~ 379 (464)
T 3v7d_B 330 MD--TTIRIWDLENGELMYTLQGHTALVGLLRLS--DK-FLVSAAAD---GSIRGWDA 379 (464)
T ss_dssp TT--SCEEEEETTTTEEEEEECCCSSCEEEEEEC--SS-EEEEEETT---SEEEEEET
T ss_pred CC--CcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CC-EEEEEeCC---CcEEEEEC
Confidence 55 469999998898888887666667677665 33 44444433 46899999
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-06 Score=101.41 Aligned_cols=242 Identities=14% Similarity=0.119 Sum_probs=129.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-c-----------ccccccCeeEEEcCCcEEEEEEEecCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-V-----------LKNVKFPSISWTHDHKGFFYNQYCDIN 211 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~-----------~~~~~~~~~~wSpDg~~l~y~~~~~~~ 211 (734)
+..+++||||+.||-... ..+|++||+.+|..... . .....+..++|||||+.|+....+.
T Consensus 438 v~sv~~spdg~~laSgs~-----DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg-- 510 (902)
T 2oaj_A 438 KRQKLPAEYGTAFITGHS-----NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG-- 510 (902)
T ss_dssp CCCCCCCSEEEEEEEEET-----TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS--
T ss_pred CCcccccccCcEEEEecC-----CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc--
Confidence 445688999999885443 35899999999863211 0 1112346899999999988876533
Q ss_pred CCCCCCcccccCCcEEEEEECCCCCC---------CC--------------------------------eeEEecCCCCe
Q psy4818 212 GTADGTETTAHMGQKIYYHVLGTEQD---------KD--------------------------------IPVVEFPNGRS 250 (734)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~l~t~~~---------~~--------------------------------~~v~~~~~~~~ 250 (734)
.|.+|++.++.. .+ ..+.....+..
T Consensus 511 --------------tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 511 --------------DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp --------------CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred --------------EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 466666554310 00 01112222344
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-ccccceEEE-EE-----ecC---CeEEEE
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI-PGMDHHHEI-IA-----NNG---PELIVK 320 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~-~~~~~~~~~-~s-----~dg---~~l~~~ 320 (734)
.+..++||||| +|+.... ...|.+||++++. .+. ......+. .+....... |+ ||| ++|+..
T Consensus 577 ~V~svafSpdG-~lAsgs~----D~tv~lwd~~~~~--~~~-~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg 648 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYA----AGSLMLIDRRGPA--IIY-MENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG 648 (902)
T ss_dssp SEEEEEECBTS-EEEEEET----TSEEEEEETTTTE--EEE-EEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred cEEEEEecCCc-EEEEEeC----CCcEEEEECCCCe--EEE-EeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence 67789999999 8775432 2679999987721 000 00000010 111223333 89 886 455544
Q ss_pred eCCCCCCceEEEEec---CCCCCCCceE-eecCC----CCceeEEEEEe----------------------eCCEEEEEE
Q psy4818 321 TTKNAPKGKVVTINL---NNPCEKNWKT-LIPED----ENRTLDVVAAV----------------------ANNKLIVHY 370 (734)
Q Consensus 321 s~~~~~~~~l~~~d~---~~~~~~~~~~-l~~~~----~~~~~~~~~~~----------------------~~~~l~~~~ 370 (734)
++. ..|.+|++ .++. +.. +..+. ...++....+. . +..++..
T Consensus 649 s~D----~tv~~wd~~p~~~g~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~l~~ 720 (902)
T 2oaj_A 649 TDM----GEVITYKILPASGGK---FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI-PGIVLIT 720 (902)
T ss_dssp ETT----SEEEEEEEEECGGGC---EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC-CEEEEEE
T ss_pred ecC----CcEEEEEEecCCCCc---EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC-CeEEEEE
Confidence 443 45888887 4443 221 11111 11222221111 1 2333333
Q ss_pred EeCCceeEEEEECCCCceeeeeCCCCceEEee---c------cCcccceEEEEEecCCCCceEEEEeC
Q psy4818 371 IQNVRSVMDLHDLNTGKRLHSFPLDLGQITHI---S------GRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 371 ~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~---~------~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. ...+++|++.+++..+..-...+.+.++ . .++++..|+ ..+. -..+..+++
T Consensus 721 ~---~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~---~g~i~~~s~ 781 (902)
T 2oaj_A 721 G---FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVII-TLEI---NGHLRVFTI 781 (902)
T ss_dssp C---SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEE-EEET---TSEEEEEET
T ss_pred e---ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEE-EEeC---CCcEEEEEC
Confidence 3 3479999998888765553223444443 3 344554443 3332 357899998
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.3e-06 Score=86.41 Aligned_cols=209 Identities=10% Similarity=0.045 Sum_probs=121.9
Q ss_pred EEEeeEEeCCC--CcEEEEEEeCCCCceEEEEEEECCCCC--cccc-cccccccCeeEEEcC--CcEEEEEEEecCCCCC
Q psy4818 142 TALKLYAFSDN--GKHFAYCLSKSGSDWNTLHIKDVDTGK--DYPE-VLKNVKFPSISWTHD--HKGFFYNQYCDINGTA 214 (734)
Q Consensus 142 ~~~~~~~~SPD--G~~la~~~~~~g~~~~~l~v~dl~~g~--~~~~-~~~~~~~~~~~wSpD--g~~l~y~~~~~~~~~~ 214 (734)
..+..++|||+ |++|+.... + ..|++||+.+++ .+.. .........+.|+|+ ++.|+....+.
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----- 125 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSY-D----GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG----- 125 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEET-T----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CcEEEEEeCCCCCCCEEEEecc-C----CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC-----
Confidence 45788999988 888886553 2 359999999886 2221 112223468999999 88887776432
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec-------------CCcEEEEEEecCCCCceEEEEe
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD-------------CGRYLLVSTSNNTQGSDLHYFD 281 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-------------DG~~l~~~~~~~~~~~~i~~~d 281 (734)
.|.++++.+........+.. +...+..+.|+| |+++|+....+ ..|++||
T Consensus 126 -----------~i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d 188 (379)
T 3jrp_A 126 -----------KVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD----NLVKIWK 188 (379)
T ss_dssp -----------EEEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEEETT----SCEEEEE
T ss_pred -----------cEEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC----CeEEEEE
Confidence 68889988764433333332 233567899999 68888754432 5789999
Q ss_pred CCCCCCCcccCCCCceeeeccccceEEE-EEec---CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC-CCCceeE
Q psy4818 282 LHSLPDGKISGKFPLKTVIPGMDHHHEI-IANN---GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-DENRTLD 356 (734)
Q Consensus 282 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~d---g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~ 356 (734)
+.++.. .. .....+.......... |+|+ ++.|+..+. +..|..||+.++.......+... .....+.
T Consensus 189 ~~~~~~-~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 260 (379)
T 3jrp_A 189 YNSDAQ-TY---VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 260 (379)
T ss_dssp EETTTT-EE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred ecCCCc-ce---eeEEEEecccCcEeEEEECCCCCCCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEE
Confidence 876211 00 0001111222223333 9999 555554443 23588888876532111233332 1234455
Q ss_pred EEEEeeCCEEEEEEEeCCceeEEEEECCCCc
Q psy4818 357 VVAAVANNKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
.+.+..++.++++...++ .|++|++..+.
T Consensus 261 ~~~~s~~g~~l~~~~~dg--~i~iw~~~~~~ 289 (379)
T 3jrp_A 261 RASWSLSGNVLALSGGDN--KVTLWKENLEG 289 (379)
T ss_dssp EEEECSSSCCEEEEESSS--SEEEEEEEETT
T ss_pred EEEEcCCCCEEEEecCCC--cEEEEeCCCCC
Confidence 555655456666665664 57777775443
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.63 E-value=8e-08 Score=98.50 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=76.1
Q ss_pred CCCcEEEEecCCCCCcCC----ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH
Q psy4818 486 RRNPVIIYGYGGYGVSVL----PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~----~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 561 (734)
+..|+||++||..+.... ..|.. +.+.|.++||.|+++|+||.|.... .....+++.+.++.+++
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~-l~~~L~~~G~~V~~~d~~g~g~s~~----------~~~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYG-IQEDLQQRGATVYVANLSGFQSDDG----------PNGRGEQLLAYVKTVLA 74 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTT-HHHHHHHTTCCEEECCCCSSCCSSS----------TTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHH-HHHHHHhCCCEEEEEcCCCCCCCCC----------CCCCHHHHHHHHHHHHH
Confidence 456789999998665421 34444 4566777899999999999554211 12335566666666555
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 562 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
. .+.+++.++|||+||.++..++.++|+.++++|+.++.
T Consensus 75 ~--~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p 113 (320)
T 1ys1_X 75 A--TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113 (320)
T ss_dssp H--HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred H--hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCC
Confidence 4 24568999999999999999999999999999988774
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.62 E-value=7.6e-08 Score=97.32 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=73.8
Q ss_pred CCCcEEEEecCCCCCcC---CccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHc
Q psy4818 486 RRNPVIIYGYGGYGVSV---LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK 562 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~---~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 562 (734)
+..|.||++||..+... ...|.. +...|.++||.|+.+|+||.+. .. ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~-~~~~L~~~G~~v~~~d~~g~g~---s~----------~~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFG-IPSALRRDGAQVYVTEVSQLDT---SE----------VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTT-HHHHHHHTTCCEEEECCCSSSC---HH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCCccccccccHHH-HHHHHHhCCCEEEEEeCCCCCC---ch----------hhHHHHHHHHHHHHHH
Confidence 45688999999876543 234443 4566777899999999998432 21 1245566655555544
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 563 KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 563 ~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.+.+++.++|||+||.++..++.++|+.++++|+.++.
T Consensus 71 --~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p 108 (285)
T 1ex9_A 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCC
Confidence 24468999999999999999999999999999988774
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.2e-07 Score=90.75 Aligned_cols=104 Identities=11% Similarity=-0.007 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCcCC-ccccHHHHHHHHhc--CeEEEEEecccCCCCCchhhhccccccCCCchhH-HHHHHHHHHHcCC
Q psy4818 489 PVIIYGYGGYGVSVL-PTFSISRCMFLRHF--NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDD-FQAAAEYMINKKY 564 (734)
Q Consensus 489 P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~--G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~ 564 (734)
+.||++||..+.... ..|.. +...|++. |+.|+++|+ |.|..... ..+. . ..+.+ +...++.+.....
T Consensus 6 ~pvVllHG~~~~~~~~~~~~~-~~~~L~~~~~g~~v~~~d~-G~g~s~~~--~~~~---~-~~~~~~~~~~~~~l~~~~~ 77 (279)
T 1ei9_A 6 LPLVIWHGMGDSCCNPLSMGA-IKKMVEKKIPGIHVLSLEI-GKTLREDV--ENSF---F-LNVNSQVTTVCQILAKDPK 77 (279)
T ss_dssp CCEEEECCTTCCSCCTTTTHH-HHHHHHHHSTTCCEEECCC-SSSHHHHH--HHHH---H-SCHHHHHHHHHHHHHSCGG
T ss_pred CcEEEECCCCCCCCCcccHHH-HHHHHHHHCCCcEEEEEEe-CCCCcccc--cccc---c-cCHHHHHHHHHHHHHhhhh
Confidence 347888997655422 23443 44566654 889999997 75422100 0010 0 12333 3344445433211
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCc-eeEEEEcCC
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPEL-YGAALILVG 601 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~-~~a~v~~~~ 601 (734)
. .+++.++|||+||.++..++.++|+. ++..|+..+
T Consensus 78 l-~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 78 L-QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp G-TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred c-cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 1 26899999999999999999999984 888886554
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=96.11 Aligned_cols=118 Identities=8% Similarity=-0.068 Sum_probs=79.8
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhH
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDD 551 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D 551 (734)
+...++.|.. .+.+..+.||++||..+... ..|...+...|.++||.|+.+|++|.|... .....++
T Consensus 50 L~~~i~~p~~-~~~~~~~pVVLvHG~~~~~~-~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~-----------~~~~~~~ 116 (316)
T 3icv_A 50 LDAGLTCQGA-SPSSVSKPILLVPGTGTTGP-QSFDSNWIPLSAQLGYTPCWISPPPFMLND-----------TQVNTEY 116 (316)
T ss_dssp HHHTEEETTB-BTTBCSSEEEEECCTTCCHH-HHHTTTHHHHHHHTTCEEEEECCTTTTCSC-----------HHHHHHH
T ss_pred HhhhEeCCCC-CCCCCCCeEEEECCCCCCcH-HHHHHHHHHHHHHCCCeEEEecCCCCCCCc-----------HHHHHHH
Confidence 4445555643 33345667889999755431 233313456777789999999999854211 0112456
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC---CCceeEEEEcCCcch
Q psy4818 552 FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR---PELYGAALILVGALD 604 (734)
Q Consensus 552 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~---p~~~~a~v~~~~~~d 604 (734)
+.+.++.+.+. ...+++.|+||||||+++.+++..+ +++++.+|+.+|...
T Consensus 117 la~~I~~l~~~--~g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 117 MVNAITTLYAG--SGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHHHH--TTSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 77777777665 2336899999999999998877764 588999999887654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-06 Score=91.18 Aligned_cols=208 Identities=10% Similarity=0.060 Sum_probs=119.8
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCC--------CCCCeeEEecCCCCeeEEEEEEecCC
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTE--------QDKDIPVVEFPNGRSLGLHSEVTDCG 261 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~--------~~~~~~v~~~~~~~~~~~~~~~SpDG 261 (734)
+..++|+|++..++++...+ ..|+++++.+. .......+.. +......+.|+|++
T Consensus 131 v~~l~~~p~~~~~lat~~~d---------------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPS---------------SDVLVFDYTKHPSKPEPSGECQPDLRLRG--HQKEGYGLSWNPNL 193 (430)
T ss_dssp CSEEEEETTEEEEEEEECSS---------------SCEEEEEGGGSCSSCCTTCCCCCSEEEEC--CSSCCCCEEECTTS
T ss_pred EEEEEECCCCCcEEEEECCC---------------CcEEEEECCCcccccCccccCCCcEEecC--CCCCeEEEEeCCCC
Confidence 46899999866666665421 25888888652 1122222322 22234578999999
Q ss_pred c-EEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 262 R-YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 262 ~-~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
+ +|+ +.. ....|.+|++.++....-. ......+.......... |+|++..+++.... +..|..+|+.+..
T Consensus 194 ~~~l~-s~~---~dg~i~vwd~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~---dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 194 NGYLL-SAS---DDHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD---DQKLMIWDTRNNN 265 (430)
T ss_dssp TTEEE-EEC---TTSCEEEEETTSCCBGGGE-EECSEEECCCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCSC
T ss_pred CCeEE-EEe---CCCeEEEEeCCCCCCCCce-eccceeecCCCCCEeeeEEeCCCCCEEEEEeC---CCeEEEEECCCCC
Confidence 9 555 332 2257999999873211000 00011122222223333 88865555554433 3569999998652
Q ss_pred C-CCceEeecCCCCceeEEEEEee-CCEEEEEEEeCCceeEEEEECCC-CceeeeeCCCCceEEeeccCcccceEEEEEe
Q psy4818 340 E-KNWKTLIPEDENRTLDVVAAVA-NNKLIVHYIQNVRSVMDLHDLNT-GKRLHSFPLDLGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 340 ~-~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~l~~~dl~~-g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~s 416 (734)
. .....+..+. ..+..+.+.. +..++++...+ ..|.+||+.+ ++.+..+....+.+..+.++|+++.++++.+
T Consensus 266 ~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~d--g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 266 TSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp SSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETT--SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCC--CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence 1 1223332222 3445555544 34577777666 4699999976 3445566555667888999999877777665
Q ss_pred cCCCCceEEEEeC
Q psy4818 417 SFLQPGTIYHCNI 429 (734)
Q Consensus 417 s~~~P~~~~~~d~ 429 (734)
.. ..+.+||+
T Consensus 342 ~d---~~i~iwd~ 351 (430)
T 2xyi_A 342 TD---RRLHVWDL 351 (430)
T ss_dssp TT---SCCEEEEG
T ss_pred CC---CcEEEEeC
Confidence 54 36888888
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.6e-06 Score=88.07 Aligned_cols=209 Identities=10% Similarity=0.062 Sum_probs=118.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC---CCCcccccc-------------cccccCee--EEEcCCcEEE
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD---TGKDYPEVL-------------KNVKFPSI--SWTHDHKGFF 203 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~---~g~~~~~~~-------------~~~~~~~~--~wSpDg~~l~ 203 (734)
..+..++|+|||++|+..... ..|++||++ +|+.+.... .......+ .|+||++.|+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKD-----GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCC-----CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 347899999999998865532 369999984 554322111 00111122 2668888777
Q ss_pred EEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC
Q psy4818 204 YNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH 283 (734)
Q Consensus 204 y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~ 283 (734)
....+. .|++|++.+.. .+..+..+.+...+..++|+|||++|+.... ...|.+||+.
T Consensus 187 ~~~~d~----------------~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~ 244 (437)
T 3gre_A 187 ALTNLS----------------RVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTT----RGIIDIWDIR 244 (437)
T ss_dssp EEETTS----------------EEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEET----TSCEEEEETT
T ss_pred EEeCCC----------------eEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEEcC----CCeEEEEEcC
Confidence 666432 79999997754 2233333213346778999999999885432 2579999998
Q ss_pred CCCCCcccCCCCceeee-ccccceEEE-EE----ecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-------
Q psy4818 284 SLPDGKISGKFPLKTVI-PGMDHHHEI-IA----NNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED------- 350 (734)
Q Consensus 284 ~~~~~~l~~~~~~~~l~-~~~~~~~~~-~s----~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~------- 350 (734)
++. ....+. .+....... |+ +++..|+ .+.. +..|.+||+.++.. ...+..+.
T Consensus 245 ~~~--------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~-s~~~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 245 FNV--------LIRSWSFGDHAPITHVEVCQFYGKNSVIVV-GGSS---KTFLTIWNFVKGHC--QYAFINSDEQPSMEH 310 (437)
T ss_dssp TTE--------EEEEEBCTTCEEEEEEEECTTTCTTEEEEE-EEST---TEEEEEEETTTTEE--EEEEESSSSCCCGGG
T ss_pred Ccc--------EEEEEecCCCCceEEEEeccccCCCccEEE-EEcC---CCcEEEEEcCCCcE--EEEEEcCCCCCccce
Confidence 721 112221 222122222 33 3444333 3332 35699999876541 12222111
Q ss_pred -----------------CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCC
Q psy4818 351 -----------------ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL 394 (734)
Q Consensus 351 -----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~ 394 (734)
....+..+.+.+ +.++++...+ ..|++||+.+++....+..
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVSN-DKILLTDEAT--SSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEET-TEEEEEEGGG--TEEEEEETTCGGGCEEEEC
T ss_pred ecccccccccceecccccCCceEEEEECC-ceEEEecCCC--CeEEEEECCCcccceEEec
Confidence 111233344454 6777777666 4899999988886666654
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-07 Score=101.89 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=76.3
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHH-HHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRC-MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
+...|+||++||..+.. ...|...+. .++++.+|.|+++|+||+|... +..+. ..-....+++.+.+++|.++.
T Consensus 66 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~v~~~la~ll~~L~~~~ 140 (449)
T 1hpl_A 66 NTGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTA--YSQAS--QNVRIVGAEVAYLVGVLQSSF 140 (449)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCc--cHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999965443 223444333 4455569999999999965432 11110 000111245666677776443
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.++.+++.|+|||+||.+++.++.++|++++.++...|.
T Consensus 141 g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 141 DYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 356789999999999999999999999999999877664
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-07 Score=98.54 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=76.3
Q ss_pred eEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcc---ccccC---
Q psy4818 473 PMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAG---RLLKK--- 545 (734)
Q Consensus 473 ~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~---~~~~~--- 545 (734)
.-..+....+-.+...|+| +.|||.+..... .....+..+..+.|+.|+++|.||.|.... +.... ....+
T Consensus 24 ~qRy~~~~~~~~~~g~Pi~-l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p-~~~~~~~~~~~l~~lt 101 (446)
T 3n2z_B 24 NQRYLVADKYWKKNGGSIL-FYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLP-FGDNSFKDSRHLNFLT 101 (446)
T ss_dssp EEEEEEECTTCCTTTCEEE-EEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCT-TGGGGGSCTTTSTTCS
T ss_pred EEEEEEehhhcCCCCCCEE-EEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCC-CCccccccchhhccCC
Confidence 3334443333222345754 558987754321 111223345555689999999999554321 11100 01111
Q ss_pred -CCchhHHHHHHHHHHHcC-CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 546 -QNCFDDFQAAAEYMINKK-YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 546 -~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
...++|+...+++|..+. .....++.++||||||.++++++.++|+++.++|+.++
T Consensus 102 ~~q~~~Dl~~~~~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 102 SEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 224567777777776541 12335799999999999999999999999998887553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-05 Score=80.53 Aligned_cols=210 Identities=8% Similarity=0.024 Sum_probs=114.7
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
.++.|||||++|+++.... ...|.++| ++++.+.. .... ..+...|+++..++....+
T Consensus 128 ~~~~~spDG~~l~v~n~~~---~~~v~viD-~t~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~d-------------- 186 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAA---GPAVGLVV-QGGSSDDQLLSSP---TCYHIHPGAPSTFYLLCAQ-------------- 186 (373)
T ss_pred cceEECCCCCEEEEEecCC---CCeEEEEE-CCCCEEeEEcCCC---ceEEEEeCCCceEEEEcCC--------------
Confidence 4689999999998775322 14799999 99986543 2211 2245567887766554321
Q ss_pred CcEEEEEECCCCCCCCe----eEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 224 GQKIYYHVLGTEQDKDI----PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~----~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.++..++. ++..... .++ ....+ .+..+.+++++..+++.... ..++++|+.++. ..+. ..+...
T Consensus 187 -g~~~~vd~-~g~~~~~~~~~~~~-~~~~p-~~~~~~~~~~~~~~~~~~~~----~~v~vid~~~~~-~~v~--~~~~~~ 255 (373)
T 2mad_H 187 -GGLAKTDH-AGGAAGAGLVGAML-TAAQN-LLTQPAQANKSGRIVWPVYS----GKILQADISAAG-ATNK--APIDAL 255 (373)
T ss_pred -CCEEEEEC-CCcEEEEEeccccc-cCCcc-eeecceeEecCCEEEEEcCC----ceEEEEeccCCc-ceEe--eeeeec
Confidence 13455555 3321100 011 11112 33456788888877766422 489999997621 1110 011100
Q ss_pred e-----cccc-ceE--EEEEecCCeEEEEeCCCC------CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCC
Q psy4818 300 I-----PGMD-HHH--EIIANNGPELIVKTTKNA------PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANN 364 (734)
Q Consensus 300 ~-----~~~~-~~~--~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 364 (734)
. .... .+. ..+++|++++|+..+... ....|+++|+++.+ ...-++-. ... ..+.+. +++
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---vv~~i~~g-~~p-~~i~~s~Dg~ 330 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---TSSQISLG-HDV-DAISVAQDGG 330 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE---EEEEEECC-CCc-CeEEECCCCC
Confidence 0 0001 111 137899999998765321 23579999998765 22223322 122 233344 434
Q ss_pred EEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
.+++.... +...|.++|+++++.++.+
T Consensus 331 ~~l~v~~~-~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 331 PDLYALSA-GTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEEcC-CCCeEEEEECCCCCEEeee
Confidence 35555542 2368999999999887663
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-05 Score=83.97 Aligned_cols=240 Identities=10% Similarity=0.005 Sum_probs=127.8
Q ss_pred eEEeCCCCcEEEEEEeC-----CCCceEEEEEEECCCCCccccc-cc-------ccccCeeEEEcCCcEEEEEEEecCCC
Q psy4818 146 LYAFSDNGKHFAYCLSK-----SGSDWNTLHIKDVDTGKDYPEV-LK-------NVKFPSISWTHDHKGFFYNQYCDING 212 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~-----~g~~~~~l~v~dl~~g~~~~~~-~~-------~~~~~~~~wSpDg~~l~y~~~~~~~~ 212 (734)
++.+||||++|..+... .|.....|.++|+.+++.+... .+ ......+++||||+++|.....+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~--- 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--- 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS---
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC---
Confidence 69999999998877531 2334578999999999865432 12 12246899999999888765321
Q ss_pred CCCCCcccccCCcEEEE--EECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC-----C
Q psy4818 213 TADGTETTAHMGQKIYY--HVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS-----L 285 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~--~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~-----~ 285 (734)
...|.+ +++.+ +.....+.. ....|+|+..++... ....+.++++++ +
T Consensus 146 -----------~~~v~V~~iD~~t-----v~~i~v~~~------~~~~p~g~~~~~~~~---~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 146 -----------SAAAGLSVPGASD-----DQLTKSASC------FHIHPGAAATHYLGS---CPASLAASDLAAAPAAAG 200 (368)
T ss_dssp -----------SCEEEEEETTTEE-----EEEEECSSC------CCCEEEETTEEECCC---CTTSCEEEECCSSCCCCE
T ss_pred -----------CCeEEEEEEchhh-----ceEEECCCc------eEEccCCCeEEEEEc---CCCCEEEEECccccccCC
Confidence 113444 33332 111111110 123455554443211 112334455543 1
Q ss_pred CCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC------CCcee---E
Q psy4818 286 PDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED------ENRTL---D 356 (734)
Q Consensus 286 ~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~------~~~~~---~ 356 (734)
... .+. ... +..+.... .+++++.+++.+. ..++.+|+.+.... ....+.-. ..... +
T Consensus 201 ~v~-~~~-t~~--i~vg~~P~---~~~~~~~~~~vs~-----~~V~viD~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 201 IVG-AQC-TGA--QNCSSQAA---QANYPGMLVWAVA-----SSILQGDIPAAGAT-MKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp ECC-CCS-CTT--SCBCSCCE---EETTTTEEEECBS-----SCCEEEECCSSCCE-EECCCCSSCTHHHHTTEEECSSS
T ss_pred eEE-EEe-eee--eeCCCCcc---ccccCCEEEEEcC-----CEEEEEECCCCcce-EEEEEEeccccccccccccCcce
Confidence 000 000 000 00111222 2788888888776 35888998653210 00000000 00000 0
Q ss_pred -EEEEeeCCEEEEEEEeC-C-----ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 357 -VVAAVANNKLIVHYIQN-V-----RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 357 -~~~~~~~~~l~~~~~~~-~-----~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
-....+++++|+..... + ...+.++|+++++.++.|..+. ...++.+++|++.++++.... -..+..+|+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~--~~~VsVID~ 344 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAG--TEVLDIYDA 344 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETT--TTEEEEEES
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCC--CCeEEEEEC
Confidence 11233456777765523 3 2446699999998888776543 345778889998888876511 247999999
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.8e-07 Score=88.64 Aligned_cols=195 Identities=9% Similarity=-0.019 Sum_probs=103.5
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..|.||++||..+... .|.. +...|. .++.|+.+|++|.+ ...+++.+.++.+.
T Consensus 20 ~~~~~l~~~hg~~~~~~--~~~~-~~~~l~-~~~~v~~~d~~g~~----------------~~~~~~~~~i~~~~----- 74 (244)
T 2cb9_A 20 QGGKNLFCFPPISGFGI--YFKD-LALQLN-HKAAVYGFHFIEED----------------SRIEQYVSRITEIQ----- 74 (244)
T ss_dssp CCSSEEEEECCTTCCGG--GGHH-HHHHTT-TTSEEEEECCCCST----------------THHHHHHHHHHHHC-----
T ss_pred CCCCCEEEECCCCCCHH--HHHH-HHHHhC-CCceEEEEcCCCHH----------------HHHHHHHHHHHHhC-----
Confidence 34578899999765543 3433 445565 48999999999831 12345555555441
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcC---CCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHH----HHHHhCCc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQR---PELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHF----HNLLSYSP 638 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~---p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~sp 638 (734)
...++.++|+|+||.++..++.+. ++.++.+|+..+.............. ...++-.+...+.+ ..+..+..
T Consensus 75 ~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (244)
T 2cb9_A 75 PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTEND-DSAAYLPEAVRETVMQKKRCYQEYWA 153 (244)
T ss_dssp SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCCCCC--------CCSCHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccccccccHH-HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 124699999999999999988764 56677777766543210000000000 00001011000111 11111111
Q ss_pred -cCCCCCCCCCccCCcEEEEecC--CCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCC--CCCCchHHhHHH
Q psy4818 639 -LHNIKVPPNNTQYPATLVLTGD--HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH--GQGTPLMKSIEE 713 (734)
Q Consensus 639 -~~~~~~p~~~~~~P~~Li~~g~--~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH--~~~~~~~~~~~~ 713 (734)
...... +++| +++++|+ .|. +++.. ...+.+.. ...+++..+++ || .+..+. ..+.
T Consensus 154 ~~~~~~~----i~~P-vl~i~g~~~~D~-~~~~~----~~~w~~~~------~~~~~~~~i~g-gH~~~~~~~~--~~~~ 214 (244)
T 2cb9_A 154 QLINEGR----IKSN-IHFIEAGIQTET-SGAMV----LQKWQDAA------EEGYAEYTGYG-AHKDMLEGEF--AEKN 214 (244)
T ss_dssp HCCCCSC----BSSE-EEEEECSBCSCC-CHHHH----TTSSGGGB------SSCEEEEECSS-BGGGTTSHHH--HHHH
T ss_pred hhccCCC----cCCC-EEEEEccCcccc-ccccc----hhHHHHhc------CCCCEEEEecC-ChHHHcChHH--HHHH
Confidence 112222 6777 9999999 786 33222 12222220 23578889996 99 554322 2345
Q ss_pred HHHHHHHHHHHc
Q psy4818 714 MTDIYVFLMKSL 725 (734)
Q Consensus 714 ~~~~~~fl~~~l 725 (734)
...+.+||.+..
T Consensus 215 ~~~i~~~L~~~~ 226 (244)
T 2cb9_A 215 ANIILNILDKIN 226 (244)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHhcCc
Confidence 556777877543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.2e-05 Score=80.65 Aligned_cols=232 Identities=11% Similarity=0.108 Sum_probs=132.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+..+.| ++++|+.... ...|++||+.+++.+..... ......+.| ||+.|+....+.
T Consensus 202 v~~~~~--~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg------------- 259 (445)
T 2ovr_B 202 VRCMHL--HEKRVVSGSR-----DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF------------- 259 (445)
T ss_dssp EEEEEE--ETTEEEEEET-----TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS-------------
T ss_pred EEEEEe--cCCEEEEEeC-----CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC-------------
Confidence 344444 4555554432 24688999888875432221 112234555 777776655322
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
.|.++++.++. .+.....+...+..+.| ||++|+.... ...|.+||+.++. ....+ ..
T Consensus 260 ---~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~--------~~~~~-~~ 317 (445)
T 2ovr_B 260 ---MVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGN--------CIHTL-TG 317 (445)
T ss_dssp ---CEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCC--------EEEEE-CC
T ss_pred ---EEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCC--------EEEEE-cC
Confidence 57888876643 22222222334455566 8998875432 2579999998731 11222 22
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-CCceeEEEEEeeCCEEEEEEEeCCceeEEEE
Q psy4818 303 MDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 303 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 381 (734)
.......++++++.++..+. ++.|..+|+.++.. ...+.... ....+..+.+ + +.++++...+ ..|.+|
T Consensus 318 ~~~~v~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~-~-~~~l~s~~~d--g~v~iw 387 (445)
T 2ovr_B 318 HQSLTSGMELKDNILVSGNA----DSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQF-N-KNFVITSSDD--GTVKLW 387 (445)
T ss_dssp CCSCEEEEEEETTEEEEEET----TSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEE-C-SSEEEEEETT--SEEEEE
T ss_pred CcccEEEEEEeCCEEEEEeC----CCeEEEEECCCCcE--EEEEccCCCCCCCEEEEEE-C-CCEEEEEeCC--CeEEEE
Confidence 22233346677776665443 34699999976541 22332211 2334455544 3 3455555555 479999
Q ss_pred ECCCCceeeeeC-----CCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 382 DLNTGKRLHSFP-----LDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 382 dl~~g~~~~~l~-----~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.+|+.++.+. ...+.+..+.+++++..++....+-+.+..++++|.
T Consensus 388 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred ECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 999998777662 225677888888887655555444444677999998
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-07 Score=100.61 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=74.1
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHH-HHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCM-FLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
+...|+||++||..+.. ...|...+.. ++.+.||.|+++|+||++... +..+. ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~~a~~l~~ll~~L~~~~ 141 (450)
T 1rp1_A 67 QTDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAA--NNVRVVGAQVAQMLSMLSANY 141 (450)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 35679999999975443 2234443333 444448999999999965322 11111 001112345666677775432
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.++.+++.|+|||+||.+++.++.++|+ ++.++...|.
T Consensus 142 g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 142 SYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred CCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 3467899999999999999999999999 8888876654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-05 Score=81.99 Aligned_cols=239 Identities=10% Similarity=0.043 Sum_probs=125.1
Q ss_pred EEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcE
Q psy4818 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQK 226 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 226 (734)
..+++|++.|+-... ...|++||+.+|+.+..... .....+.|+|+ ++-...+. ...-......
T Consensus 42 ~~~~~d~~~l~sg~~-----Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~---~~s~s~D~-------~i~~w~~~~~ 105 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCE-----DGALHFTQLKDSKTITTITT-PNPRTGGEHPA---IISRGPCN-------RLLLLYPGNQ 105 (343)
T ss_dssp SSSSEEEEEEEEEEE-----TTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS---EEEECSTT-------EEEEEETTTE
T ss_pred hhhcCCCCEEEEECC-----CCcEEEEECCCCcEEEEEec-CCceeeeeCCc---eEEecCCC-------eEEEEEccCc
Confidence 456788888876543 24799999999885432111 12245566666 22222111 0000000112
Q ss_pred EEEEECCCCCCCCeeEEecCCCCeeEEEEEEec--CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-ccc
Q psy4818 227 IYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD--CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI-PGM 303 (734)
Q Consensus 227 l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~-~~~ 303 (734)
+..+++.+.. .+..+.. .+...+..+.|+| +|++++... ....|.+||+.++. . .... ...
T Consensus 106 ~~~~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s----~dg~i~~wd~~~~~--------~-~~~~~~~~ 169 (343)
T 3lrv_A 106 ITILDSKTNK--VLREIEV-DSANEIIYMYGHNEVNTEYFIWAD----NRGTIGFQSYEDDS--------Q-YIVHSAKS 169 (343)
T ss_dssp EEEEETTTCC--EEEEEEC-CCSSCEEEEECCC---CCEEEEEE----TTCCEEEEESSSSC--------E-EEEECCCS
T ss_pred eEEeecCCcc--eeEEeec-CCCCCEEEEEcCCCCCCCEEEEEe----CCCcEEEEECCCCc--------E-EEEEecCC
Confidence 3334443332 1112221 1223467899999 999987443 22579999998732 1 1111 111
Q ss_pred c-ceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEE
Q psy4818 304 D-HHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 304 ~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 381 (734)
. .... .|+|||..|+..+. +..|..+|+.++.. ....+.......+..+.+..++..+++.. ++ .|.+|
T Consensus 170 ~~~i~~~~~~pdg~~lasg~~----dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~--~v~iw 240 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLALYSP----DGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ--TVVCF 240 (343)
T ss_dssp SCCCCEEEECTTSCEEEEECT----TSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECTTSSEEEEEE-SS--BEEEE
T ss_pred CCceEEEEECCCCCEEEEEcC----CCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeCCCCEEEEEe-CC--eEEEE
Confidence 1 1222 38999886664332 34699999987652 21223331234556666665566666665 33 79999
Q ss_pred ECCCCceeeeeCC---CCceE--EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 382 DLNTGKRLHSFPL---DLGQI--THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 382 dl~~g~~~~~l~~---~~g~v--~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.+++....+.. +...+ ..+++++++..++....+. ..+.+|++
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d---~~i~v~~~ 290 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES---NSLTIYKF 290 (343)
T ss_dssp ETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT---TEEEEEEE
T ss_pred EcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC---CcEEEEEE
Confidence 9987765444432 11222 2477888887665433212 25666666
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-05 Score=82.86 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=128.7
Q ss_pred CCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEE
Q psy4818 152 NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHV 231 (734)
Q Consensus 152 DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (734)
++++|..+...+ ..|.++|+++++.+...........+++++|| .||.+... ...|++++
T Consensus 52 ~~~~lyv~~~~~----~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~---------------~~~v~~iD 111 (328)
T 3dsm_A 52 RDGIGWIVVNNS----HVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIW---------------DYRIFIIN 111 (328)
T ss_dssp ETTEEEEEEGGG----TEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBS---------------CSEEEEEE
T ss_pred ECCEEEEEEcCC----CEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECC---------------CCeEEEEE
Confidence 566666655433 36999999999865422222234678999998 56544311 23788888
Q ss_pred CCCCCCCCeeEEecCC------CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc
Q psy4818 232 LGTEQDKDIPVVEFPN------GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH 305 (734)
Q Consensus 232 l~t~~~~~~~v~~~~~------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~ 305 (734)
+.+.... ....... .+ .++++ +++.|++... .....|+++|++++. ....+..+...
T Consensus 112 ~~t~~~~--~~i~~g~~~~~~~~p---~~i~~--~~~~lyv~~~--~~~~~v~viD~~t~~--------~~~~i~~g~~p 174 (328)
T 3dsm_A 112 PKTYEIT--GYIECPDMDMESGST---EQMVQ--YGKYVYVNCW--SYQNRILKIDTETDK--------VVDELTIGIQP 174 (328)
T ss_dssp TTTTEEE--EEEECTTCCTTTCBC---CCEEE--ETTEEEEEEC--TTCCEEEEEETTTTE--------EEEEEECSSCB
T ss_pred CCCCeEE--EEEEcCCccccCCCc---ceEEE--ECCEEEEEcC--CCCCEEEEEECCCCe--------EEEEEEcCCCc
Confidence 7765321 1122211 22 23455 5677766532 113689999998731 11111111111
Q ss_pred eEEEEEecCCeEEEEeCCCCC-------CceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCcee
Q psy4818 306 HHEIIANNGPELIVKTTKNAP-------KGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSV 377 (734)
Q Consensus 306 ~~~~~s~dg~~l~~~s~~~~~-------~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 377 (734)
..-.+++||+ +|+.++.... ...|+++|.++.+ +...+.-........+.+. +++.+|+.. . .
T Consensus 175 ~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~----~ 245 (328)
T 3dsm_A 175 TSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFT---VEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N----D 245 (328)
T ss_dssp CCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTE---EEEEEECCTTCCCEEEEECTTSCEEEEES-S----S
T ss_pred cceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCe---EEEEEecCCCCCceeEEEecCCCEEEEEc-c----E
Confidence 1123678876 6766653211 2579999998764 3322221111223445454 345666542 2 7
Q ss_pred EEEEECCCCceeee--eCCCCceEEeeccCcccceEEEEE-ecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHS--FPLDLGQITHISGRRKYNEVFYGF-TSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~--l~~~~g~v~~~~~~~d~~~l~~~~-ss~~~P~~~~~~d~ 429 (734)
++++|+++++.... ++.......++.++|+++.++++. .++.....++++|.
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 99999987775321 221123455777888777888774 23344678999998
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-05 Score=81.99 Aligned_cols=247 Identities=12% Similarity=0.092 Sum_probs=133.9
Q ss_pred EeeEEeCCCCcEEEEEEe---CCCCceEEEEEEECCCCCcccccc-----cccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLS---KSGSDWNTLHIKDVDTGKDYPEVL-----KNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~---~~g~~~~~l~v~dl~~g~~~~~~~-----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
..+++|+|||+. .++.. ..+.....|+++|+.+|+...... ......++.+++|+..|+++...
T Consensus 20 ~~~~~~~~~g~l-~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------- 91 (314)
T 1pjx_A 20 AEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------- 91 (314)
T ss_dssp CEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-------
T ss_pred ccCceECCCCCE-EEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-------
Confidence 457899999974 44310 001112469999998887543222 11123578899993356655421
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeE-EecCCC--CeeEEEEEEecCCcEEEEEEecCC------------CCceEEEE
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPV-VEFPNG--RSLGLHSEVTDCGRYLLVSTSNNT------------QGSDLHYF 280 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v-~~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~------------~~~~i~~~ 280 (734)
..|++++.. +.. ..+ ...... .....++.+++||+.. +...... ....|+.+
T Consensus 92 ---------~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 92 ---------LGLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp ---------TEEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred ---------CCEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEE
Confidence 158888776 321 111 111100 1123468899999754 3332210 01578888
Q ss_pred eCCCCCCCcccCCCCceeeeccccceEE-EEE----ecCCeEEEEeCCCCCCceEEEEecC-CCCCCCceEe--ecCCCC
Q psy4818 281 DLHSLPDGKISGKFPLKTVIPGMDHHHE-IIA----NNGPELIVKTTKNAPKGKVVTINLN-NPCEKNWKTL--IPEDEN 352 (734)
Q Consensus 281 d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s----~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~~~l--~~~~~~ 352 (734)
+.+. . ...+......... .++ +||+.+|+.... ..+|++++++ ++.......+ ++....
T Consensus 159 ~~~g-~---------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~---~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 159 TTDG-Q---------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP---TKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp CTTS-C---------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETT---TTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred CCCC-C---------EEEeccCCCCcceEEEecccCCCCCEEEEEECC---CCeEEEEECCCCCccccceEEEECCCCCC
Confidence 8653 1 1222222122222 388 888877776443 3468888875 2220000111 111100
Q ss_pred ceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 353 RTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.....+.+..++.+++....+ ..|+++|..+|+.+..+..+...+.++.++++++.+++.... ...++++++
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~ 297 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGS--SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEW 297 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETT--TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCC--CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEEeC
Confidence 234455555556777665433 479999996687656665554456677778888777776543 257999998
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-05 Score=82.02 Aligned_cols=225 Identities=11% Similarity=0.058 Sum_probs=111.4
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
..+++||||++|+.+.... ...|.++|+++++.+.. .. ... .+....|+++..++....+
T Consensus 111 ~~i~~spdg~~l~v~n~~~---~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~~~d------------- 172 (361)
T 2oiz_A 111 GLFRQTTDGKFIVLQNASP---ATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMTICGD------------- 172 (361)
T ss_dssp GGEEECTTSSEEEEEEESS---SEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEEEETT-------------
T ss_pred ceEEECCCCCEEEEECCCC---CCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEEECCC-------------
Confidence 4689999999887654321 25799999999976532 11 111 1122334443222222111
Q ss_pred CCcEEEEEECCCCCCCC-----eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 223 MGQKIYYHVLGTEQDKD-----IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~-----~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.++..+.+....... ..++.....+ .....+|||+.+++... ...++++|+.+.. ..+.. .+.
T Consensus 173 --g~~~~v~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~----~~~v~v~d~~~~~-~~~~~--~~~ 240 (361)
T 2oiz_A 173 --GGLLTINLGEDGKVASQSRSKQMFSVKDDP---IFIAPALDKDKAHFVSY----YGNVYSADFSGDE-VKVDG--PWS 240 (361)
T ss_dssp --SSEEEEEECTTSSEEEEEECCCCSCTTTSC---BCSCCEECSSEEEEEBT----TSEEEEEECSSSS-CEEEE--EEE
T ss_pred --CcEEEEEECCCCcEeeeccccceEcCCCCc---eEEEecccCCEEEEEeC----CCeEEEEEecCCC-ceecc--ccc
Confidence 012222221100000 0011111111 12345788988877542 2479999987621 11100 000
Q ss_pred eee-----cccc-ce--EEEEEecCCeEEEEeCCCC-------CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee
Q psy4818 298 TVI-----PGMD-HH--HEIIANNGPELIVKTTKNA-------PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA 362 (734)
Q Consensus 298 ~l~-----~~~~-~~--~~~~s~dg~~l~~~s~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 362 (734)
... .+.. .+ ...+++|++++|+....++ ....|+++|+++.+ ...-++.. . ...+.+..
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~-~--p~~ia~sp 314 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGR-D--ALSMTIDQ 314 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECT-T--CCEEEEET
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---EEEEEecC-C--eeEEEECC
Confidence 000 0000 11 1248999999887653111 23479999998765 23333333 2 33444443
Q ss_pred CCEEEEEEEeCCceeEEEEECCCC--ceeeeeC-CCCceEEeeccCcccc
Q psy4818 363 NNKLIVHYIQNVRSVMDLHDLNTG--KRLHSFP-LDLGQITHISGRRKYN 409 (734)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~dl~~g--~~~~~l~-~~~g~v~~~~~~~d~~ 409 (734)
+++.++.... ..|.+||++++ +.+..+. ...+ ...+.++|+++
T Consensus 315 dg~~l~v~n~---~~v~v~D~~t~~l~~~~~i~~~G~~-P~~~~~~p~G~ 360 (361)
T 2oiz_A 315 QRNLMLTLDG---GNVNVYDISQPEPKLLRTIEGAAEA-SLQVQFHPVGG 360 (361)
T ss_dssp TTTEEEEECS---SCEEEEECSSSSCEEEEEETTSCSS-EEEEEECCCSC
T ss_pred CCCEEEEeCC---CeEEEEECCCCcceeeEEeccCCCC-cEEEEecCCCC
Confidence 3444444432 67999999999 8777763 2222 23566677764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-05 Score=79.01 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=91.0
Q ss_pred EEEeeEEeCC--CCcEEEEEEeCCCCceEEEEEEECCCCCc---------cc-ccccccccCeeEEEcC--CcEEEEEEE
Q psy4818 142 TALKLYAFSD--NGKHFAYCLSKSGSDWNTLHIKDVDTGKD---------YP-EVLKNVKFPSISWTHD--HKGFFYNQY 207 (734)
Q Consensus 142 ~~~~~~~~SP--DG~~la~~~~~~g~~~~~l~v~dl~~g~~---------~~-~~~~~~~~~~~~wSpD--g~~l~y~~~ 207 (734)
..+..++|+| ||++|+.... + ..|++||+.+++. +. ..........+.|+|+ ++.|+....
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~-d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASY-D----KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEET-T----SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CcEEEEEEcCCCCCCEEEEEcC-C----CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 4588999999 6998886653 2 3699999988742 11 1112223467899999 888877664
Q ss_pred ecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec---------CCCCeeEEEEEEecC---CcEEEEEEecCCCCc
Q psy4818 208 CDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF---------PNGRSLGLHSEVTDC---GRYLLVSTSNNTQGS 275 (734)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~---------~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~ 275 (734)
+. .|++|++.+........... .........+.|+|+ ++.++..... .
T Consensus 133 dg----------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 192 (351)
T 3f3f_A 133 DG----------------ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE----Q 192 (351)
T ss_dssp TC----------------EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT----E
T ss_pred CC----------------cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC----C
Confidence 32 68888887665322211100 012224467899998 8887765432 3
Q ss_pred eEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCC---eEEEEeCCCCCCceEEEEecCC
Q psy4818 276 DLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGP---ELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 276 ~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~---~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
.+.+++...+.. .....+.......... |+|++. .+++.+.. +..|..||+.+
T Consensus 193 ~~~~~~~~~~~~------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~---dg~i~iwd~~~ 249 (351)
T 3f3f_A 193 AIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK---DGRIRIFKITE 249 (351)
T ss_dssp EEEEEECTTSCE------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET---TSCEEEEEEEE
T ss_pred cEEEEccCCCce------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcC---CCeEEEEeCCC
Confidence 444455444110 0011111222223333 899983 34444433 23477777764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6e-06 Score=87.72 Aligned_cols=243 Identities=9% Similarity=-0.015 Sum_probs=127.4
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc----cc--cccccCeeEEEc--------CCcEEEEEEEecCC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE----VL--KNVKFPSISWTH--------DHKGFFYNQYCDIN 211 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~----~~--~~~~~~~~~wSp--------Dg~~l~y~~~~~~~ 211 (734)
...++|+++.||-... ..+|++||+++++.... +. ....+..++|+| ||+.|+-...|.
T Consensus 94 ~~~~~~~~~~las~~~-----d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~-- 166 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQ-----DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC-- 166 (393)
T ss_dssp ---CCEEEEEEEEEET-----TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS--
T ss_pred eeecCCCCCEEEEEeC-----CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC--
Confidence 3456777777775543 24699999988864221 11 112346899998 888787766543
Q ss_pred CCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc
Q psy4818 212 GTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS 291 (734)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~ 291 (734)
.|.+|++.+... ...++.. ......++|+|++..++++... ...|.+||+.++....-.
T Consensus 167 --------------tv~~Wd~~~~~~-~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~---d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 167 --------------TLIIWRLTDEGP-ILAGYPL---SSPGISVQFRPSNPNQLIVGER---NGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp --------------EEEEEEEETTEE-EEEEEEC---SSCEEEEEEETTEEEEEEEEET---TSEEEEEETTCCC-----
T ss_pred --------------eEEEEECCCCce-eeeecCC---CCCcEEEEECCCCCceEEecCC---CCEEEEEECCCCcccccc
Confidence 688888865432 1122222 2245689999999866655543 257999999874221100
Q ss_pred C-----CCCcee------------eeccccceEEE-EE-ecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC--
Q psy4818 292 G-----KFPLKT------------VIPGMDHHHEI-IA-NNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-- 350 (734)
Q Consensus 292 ~-----~~~~~~------------l~~~~~~~~~~-~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-- 350 (734)
. ...+.. ........... |+ +||+.|+-.+. +..+..+|+.++.. ...+....
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~--~~~l~~~~~~ 299 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANND--YNEISDSTMK 299 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC-----------------
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCC--CceEeeecCc
Confidence 0 000000 00001111122 44 78887765433 34577888765321 01111000
Q ss_pred ---------------CCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEE
Q psy4818 351 ---------------ENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 351 ---------------~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~ 414 (734)
....+...... .++.+++....+ ..|++||+.+|+....+......|.+++++||++.|++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D--g~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH--GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT--TEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred cccEEEccccccccccCcceeEEEccCCCCEEEEEECCC--CEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 00111111222 224455544444 479999998887655444445568899999999888765
Q ss_pred EecCCCCceEEEEeC
Q psy4818 415 FTSFLQPGTIYHCNI 429 (734)
Q Consensus 415 ~ss~~~P~~~~~~d~ 429 (734)
..+ .+.++.+
T Consensus 378 s~~-----Gv~lvrL 387 (393)
T 4gq1_A 378 TEG-----SVLLTRL 387 (393)
T ss_dssp ESS-----EEEEEEE
T ss_pred eCC-----CeEEEEE
Confidence 322 4555555
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-05 Score=79.30 Aligned_cols=216 Identities=13% Similarity=0.108 Sum_probs=113.8
Q ss_pred EEeeEEeCCC----CcEEEEEEeCCCCceEEEEEEECCCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 143 ALKLYAFSDN----GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 143 ~~~~~~~SPD----G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
.+..+++||| +++++-.. .++.++++.+|+.+.... ....+...++||||+.+.-...
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~--------- 176 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL--------- 176 (356)
T ss_dssp EEEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE---------
T ss_pred ceEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc---------
Confidence 4667888888 88777522 346677777666443211 1222345566677764432111
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec---CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD---CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
| +. . ...++||| ||..|+ +. .....|.+||+++|.
T Consensus 177 -------------~---~~-----------~----v~~l~fs~~~g~~~~La-Sg---S~D~TIkIWDl~TGk------- 214 (356)
T 2w18_A 177 -------------M---PP-----------E----ETILTFAEVQGMQEALL-GT---TIMNNIVIWNLKTGQ------- 214 (356)
T ss_dssp -------------C---CC-----------S----SCEEEEEEEETSTTEEE-EE---ETTSEEEEEETTTCC-------
T ss_pred -------------C---CC-----------c----eeeEEeeccCCCCceEE-Ee---cCCCcEEEEECCCCc-------
Confidence 0 00 0 11356677 667776 22 233789999999842
Q ss_pred CCceeeecccc---ceEE-EEEecCCeEEEEeCC--------CCCCceEEEEecCCCCCCCceEee----cCCC-CceeE
Q psy4818 294 FPLKTVIPGMD---HHHE-IIANNGPELIVKTTK--------NAPKGKVVTINLNNPCEKNWKTLI----PEDE-NRTLD 356 (734)
Q Consensus 294 ~~~~~l~~~~~---~~~~-~~s~dg~~l~~~s~~--------~~~~~~l~~~d~~~~~~~~~~~l~----~~~~-~~~~~ 356 (734)
....+..+.. .... .|+|||+.++..+.. ...+..|..+|..++. ...+. +... ...+.
T Consensus 215 -~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 215 -LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---SVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp -EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE---EEEEEEECCCTTCCCCEEE
T ss_pred -EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---EEEEEEeeccCCCcceeEc
Confidence 2233322111 1112 389999877654421 2345678888887764 11111 2221 11221
Q ss_pred EEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCc-eEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 357 VVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLG-QITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g-~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. . .. +.++++...+ ..|++||+.+|+.+..+..+.. .+..+.++||++.++ +.+.. ..++++|+
T Consensus 291 g-~-~s-g~~lASgS~D--gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D---~TIklWd~ 355 (356)
T 2w18_A 291 G-D-VK-DHCAAAILTS--GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKD---GNIFVYHY 355 (356)
T ss_dssp E-E-EE-TTEEEEEETT--SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTT---SCEEEEEE
T ss_pred c-c-cC-CCEEEEEcCC--CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECC---CcEEEecC
Confidence 1 1 12 3456666555 4799999999998888875533 333467889886554 44332 35777764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-05 Score=78.18 Aligned_cols=234 Identities=10% Similarity=0.077 Sum_probs=121.6
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV 175 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl 175 (734)
+.++++.+||+-... ..|++.+..++..+. +... ..+..+.++|||+.++ +. . ..|+++|.
T Consensus 20 w~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~-~~~~-------~~~~~i~~~~dG~l~v-~~--~----~~l~~~d~ 80 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPA----KKVCRWDSFTKQVQR-VTMD-------APVSSVALRQSGGYVA-TI--G----TKFCALNW 80 (297)
T ss_dssp EETTTTEEEEEETTT----TEEEEEETTTCCEEE-EECS-------SCEEEEEEBTTSSEEE-EE--T----TEEEEEET
T ss_pred EECCCCEEEEEECCC----CEEEEEECCCCcEEE-EeCC-------CceEEEEECCCCCEEE-EE--C----CeEEEEEC
Confidence 334467788765333 347777765554433 3222 1267899999999433 33 1 26999999
Q ss_pred CCCCcccccc-----cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCe
Q psy4818 176 DTGKDYPEVL-----KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRS 250 (734)
Q Consensus 176 ~~g~~~~~~~-----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~ 250 (734)
++|+...... .......++++|||+ |++......... .........||+++.+.. ...+.... .
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~----~~~~~~~~~l~~~d~~g~---~~~~~~~~---~ 149 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAP----AVLERHQGALYSLFPDHH---VKKYFDQV---D 149 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBT----TBCCTTCEEEEEECTTSC---EEEEEEEE---S
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCccccc----ccccCCCcEEEEEECCCC---EEEEeecc---c
Confidence 9887432111 112235689999998 666654321000 000012346888775421 11222221 1
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceE--E-EEEecCCeEEEEeCCCCC
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHH--E-IIANNGPELIVKTTKNAP 326 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~--~-~~s~dg~~l~~~s~~~~~ 326 (734)
...+++|||||+.|++.... ...|++++++. ....+.. .+.+.. ...... . .++++| .||+....
T Consensus 150 ~pngi~~spdg~~lyv~~~~---~~~i~~~~~d~-~~G~~~~---~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~--- 218 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSL---SYSVDAFDYDL-QTGQISN---RRSVYKLEKEEQIPDGMCIDAEG-KLWVACYN--- 218 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGG---GTEEEEEEECT-TTCCEEE---EEEEEECCGGGCEEEEEEEBTTS-CEEEEEET---
T ss_pred cccceEEcCCCCEEEEecCC---CCcEEEEeccC-CCCcccC---cEEEEECCCCCCCCCeeEECCCC-CEEEEEcC---
Confidence 33578999999998775432 26889998742 1111110 011111 001111 1 266777 46665543
Q ss_pred CceEEEEecCCCCCCCceEeecCCCCceeEEEEEe--eCCEEEEEEEeCC
Q psy4818 327 KGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV--ANNKLIVHYIQNV 374 (734)
Q Consensus 327 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 374 (734)
..+|+++|.++++ ....+.-. ...+..+.+. +.+.||++....+
T Consensus 219 ~~~v~~~d~~tG~---~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 219 GGRVIRLDPVTGK---RLQTVKLP-VDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp TTEEEEECTTTCC---EEEEEECS-SSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred CCEEEEEcCCCce---EEEEEECC-CCCceEEEEeCCCCCEEEEEcCCcC
Confidence 2469999998654 23333322 1223444443 3356777665443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-05 Score=83.71 Aligned_cols=125 Identities=10% Similarity=-0.081 Sum_probs=73.4
Q ss_pred EEeCCCCcEEEEEEeCC-CCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 147 YAFSDNGKHFAYCLSKS-GSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~-g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
....|||+++. +.+.. ......|+++|.++++.+.....+.. ..+.+||||+++|.+..-...+ .......
T Consensus 38 ~~~~pd~~~vy-V~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P~va~spDG~~lyVan~~~~r~------~~G~~~~ 109 (386)
T 3sjl_D 38 EAPAPDARRVY-VNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-PNPVVADDGSFIAHASTVFSRI------ARGERTD 109 (386)
T ss_dssp CCCCCCTTEEE-EEECGGGCSSEEEEEEETTTTEEEEEEEECSS-CEEEECTTSSCEEEEEEEEEET------TEEEEEE
T ss_pred eccCCCCCEEE-EEcCcccCCCCEEEEEECCCCeEEEEEECCCC-CcEEECCCCCEEEEEccccccc------ccCCCCC
Confidence 34589999865 44432 11125899999999986543332333 3599999999988765310000 0000123
Q ss_pred EEEEEECCCCCCCCeeEEec------CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 226 KIYYHVLGTEQDKDIPVVEF------PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.|.+++..+......+.... ...+ ..+.+||||++|++.... ..+.|.++|+++
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P---~~~a~spDGk~lyVan~~--~~~~VsVID~~t 169 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYP---WMTSLTPDGKTLLFYQFS--PAPAVGVVDLEG 169 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCG---GGEEECTTSSEEEEEECS--SSCEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCC---ceEEEcCCCCEEEEEEcC--CCCeEEEEECCC
Confidence 57888877654221111110 0122 257999999998875321 126899999998
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-07 Score=93.80 Aligned_cols=110 Identities=12% Similarity=-0.003 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCCc--------CCccc----cHHHHHHHHhcCeE---EEEEecccCCCCCchhhhccccccCCCchhH
Q psy4818 487 RNPVIIYGYGGYGVS--------VLPTF----SISRCMFLRHFNGI---YAIPNIRGGGELGEDWHNAGRLLKKQNCFDD 551 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~--------~~~~~----~~~~~~~l~~~G~~---v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D 551 (734)
..+.||++||..+.. ....| .. +...|.++||. |+.+|+||.+... ... .........++
T Consensus 39 ~~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~-l~~~L~~~Gy~~~~V~~~D~~g~G~S~---~~~-~~~~~~~~~~~ 113 (342)
T 2x5x_A 39 TKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARS-VYAELKARGYNDCEIFGVTYLSSSEQG---SAQ-YNYHSSTKYAI 113 (342)
T ss_dssp CSCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSC-HHHHHHHTTCCTTSEEEECCSCHHHHT---CGG-GCCBCHHHHHH
T ss_pred CCCeEEEECCcCCCcccccccccccccccccHHH-HHHHHHhCCCCCCeEEEEeCCCCCccC---Ccc-ccCCHHHHHHH
Confidence 344588899976642 12234 33 45667777998 9999999844211 000 00112234677
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcc
Q psy4818 552 FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGAL 603 (734)
Q Consensus 552 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~ 603 (734)
+.+.++.+.++ ...+++.|+|||+||+++..++.++ |+.++.+|+.+|..
T Consensus 114 l~~~I~~l~~~--~g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~ 165 (342)
T 2x5x_A 114 IKTFIDKVKAY--TGKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGI 165 (342)
T ss_dssp HHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCT
T ss_pred HHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCc
Confidence 88888887765 2346899999999999999999987 88999999887754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.9e-05 Score=78.95 Aligned_cols=209 Identities=8% Similarity=0.006 Sum_probs=116.5
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
....+++|+|||+ .|.++..+ ..|+++|+++++............ ++|+|||+.|+.+....
T Consensus 131 ~~P~~la~d~~g~--lyv~d~~~---~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~------------ 192 (409)
T 3hrp_A 131 KYMWGIAAVGNNT--VLAYQRDD---PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG------------ 192 (409)
T ss_dssp CCEEEEEECSTTE--EEEEETTT---TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST------------
T ss_pred CCceEEEEeCCCC--EEEEecCC---CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC------------
Confidence 3466899999998 34455432 379999999887543222222223 89999999776654311
Q ss_pred cCCcEEEEEECCCCCCCCeeEE-ec-CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVV-EF-PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~-~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
...|++++..+... .... .. ........+++++|++..|++. .. ...|+++|.+++....+. ... .
T Consensus 193 --~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~-d~---~~~I~~~d~~~~~~~~~~-~~~---~ 260 (409)
T 3hrp_A 193 --THTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFV-DS---NKNFGRFNVKTQEVTLIK-QLE---L 260 (409)
T ss_dssp --TCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEE-CT---TCEEEEEETTTCCEEEEE-ECC---C
T ss_pred --CceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEE-EC---CCcEEEEECCCCCEEEEe-ccc---c
Confidence 22788888765432 1122 10 1011123468899977777763 22 358999999873210000 000 0
Q ss_pred eccccce---EEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-C------------CceeEEEEEeeC
Q psy4818 300 IPGMDHH---HEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-E------------NRTLDVVAAVAN 363 (734)
Q Consensus 300 ~~~~~~~---~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~------------~~~~~~~~~~~~ 363 (734)
....... .-.|+|+++.||+.... +.+|++++.++. ...+.... . -.....+.+..+
T Consensus 261 ~g~~~~~P~~~ia~~p~~g~lyv~d~~---~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 261 SGSLGTNPGPYLIYYFVDSNFYMSDQN---LSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp CSCCCCSSCCEEEEETTTTEEEEEETT---TTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred cCCCCCCccccEEEeCCCCEEEEEeCC---CCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 0011111 23488977888876432 457999998753 23332221 0 112345555554
Q ss_pred CEEEEEEEeCCceeEEEEECCCCce
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
+.+|++-. .+..+|+++++.+|+.
T Consensus 334 G~lyvad~-~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 334 GNFYIVDG-FKGYCLRKLDILDGYV 357 (409)
T ss_dssp CCEEEEET-TTTCEEEEEETTTTEE
T ss_pred CCEEEEeC-CCCCEEEEEECCCCEE
Confidence 66666532 1346899999767875
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.5e-05 Score=79.09 Aligned_cols=159 Identities=11% Similarity=0.114 Sum_probs=97.1
Q ss_pred EEeeEEeCC--CCcEEEEEEeCCCCceEEEEEEECCCCCccccc--ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 143 ALKLYAFSD--NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV--LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 143 ~~~~~~~SP--DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~--~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
.+..++|+| +|++++-... . ..|++||+.+++.+... .....+..++|+|||+.|+....+.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~-d----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg--------- 192 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADN-R----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG--------- 192 (343)
T ss_dssp CEEEEECCC---CCEEEEEET-T----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS---------
T ss_pred CEEEEEcCCCCCCCEEEEEeC-C----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC---------
Confidence 478899999 9999886553 2 36999999998864322 1222346889999998777655332
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|.+|++.++.... ..+.. .+...+..+.|+|||++|+... . ..|.+||+.++.... ....
T Consensus 193 -------~i~iwd~~~~~~~~-~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~----~~v~iwd~~~~~~~~-----~~~~ 253 (343)
T 3lrv_A 193 -------ILDVYNLSSPDQAS-SRFPV-DEEAKIKEVKFADNGYWMVVEC-D----QTVVCFDLRKDVGTL-----AYPT 253 (343)
T ss_dssp -------CEEEEESSCTTSCC-EECCC-CTTSCEEEEEECTTSSEEEEEE-S----SBEEEEETTSSTTCB-----SSCC
T ss_pred -------EEEEEECCCCCCCc-cEEec-cCCCCEEEEEEeCCCCEEEEEe-C----CeEEEEEcCCCCcce-----eecc
Confidence 68899998764320 12322 1334677899999999988544 2 279999998732110 0110
Q ss_pred eecc-cc--ceEEEEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 299 VIPG-MD--HHHEIIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 299 l~~~-~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
+... .. ...-.|+|+|+.|+..+..+ ..+..+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d---~~i~v~~~~~ 292 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNES---NSLTIYKFDK 292 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTT---TEEEEEEECT
T ss_pred cccccccccceEEEECCCCCEEEEecCCC---CcEEEEEEcc
Confidence 0000 00 11123899999877655422 2466666644
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.38 E-value=6.9e-05 Score=75.95 Aligned_cols=207 Identities=10% Similarity=0.060 Sum_probs=112.9
Q ss_pred CcEEEeeEEeCCC--CcEEEEEEeCCCCceEEEEEEECCCCCcccc---cccccccCeeEEEcC--CcEEEEEEEecCCC
Q psy4818 140 GTTALKLYAFSDN--GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE---VLKNVKFPSISWTHD--HKGFFYNQYCDING 212 (734)
Q Consensus 140 ~~~~~~~~~~SPD--G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~---~~~~~~~~~~~wSpD--g~~l~y~~~~~~~~ 212 (734)
+...+..++|||+ |++||-... ...|++||+.+++.... ......+..++|+|| |+.|+....+.
T Consensus 52 H~~~V~~v~~s~~~~g~~l~s~s~-----D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~--- 123 (297)
T 2pm7_B 52 HEGPVWRVDWAHPKFGTILASCSY-----DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG--- 123 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEET-----TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS---
T ss_pred ccCCeEEEEecCCCcCCEEEEEcC-----CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC---
Confidence 3345788999974 888875543 24799999998853211 112223468999998 77777655432
Q ss_pred CCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecC-------------CcEEEEEEecCCCCceEEE
Q psy4818 213 TADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDC-------------GRYLLVSTSNNTQGSDLHY 279 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-------------G~~l~~~~~~~~~~~~i~~ 279 (734)
.|.++++.+........+.. +...+..+.|+|+ +++|+. .. ....|.+
T Consensus 124 -------------~v~~wd~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s-gs---~D~~v~l 184 (297)
T 2pm7_B 124 -------------KVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GG---ADNLVKI 184 (297)
T ss_dssp -------------EEEEEEBCSSSCBCCEEEEC--CSSCEEEEEECCCC------------CCEEEE-EE---TTSCEEE
T ss_pred -------------cEEEEEecCCCceeeeeeec--ccCccceEeecCCcccccccCCCCCCcceEEE-Ec---CCCcEEE
Confidence 68888887653222233332 2334667899997 456653 22 2257888
Q ss_pred EeCCCCCCCcccCCCCceeeeccccceEEE-EEecC--CeEEEEeCCCCCCceEEEEecCCCCCCCce-Eeec-CCCCce
Q psy4818 280 FDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNG--PELIVKTTKNAPKGKVVTINLNNPCEKNWK-TLIP-EDENRT 354 (734)
Q Consensus 280 ~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~-~l~~-~~~~~~ 354 (734)
||+.++.. .. .....+..+....... |+|++ ..+++.... +..|.++++++... .+. .++. ......
T Consensus 185 wd~~~~~~-~~---~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~---D~~v~iWd~~~~~~-~~~~~~~~~~~~~~~ 256 (297)
T 2pm7_B 185 WKYNSDAQ-TY---VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ---DRTCIIWTQDNEQG-PWKKTLLKEEKFPDV 256 (297)
T ss_dssp EEEETTTT-EE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCEEEEEESSTTS-CCEEEESSSSCCSSC
T ss_pred EEEcCCCc-eE---EEEEEecCCCCceEEEEECCCCCCceEEEEEEC---CCcEEEEEeCCCCC-ccceeeeecccCCCc
Confidence 98876211 00 0011122222333333 89986 333333332 34577888765321 122 2332 121234
Q ss_pred eEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 355 LDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
+..+.+..++.++++...++ .|.+|+.
T Consensus 257 v~~~~~s~~g~~las~~~D~--~v~lw~~ 283 (297)
T 2pm7_B 257 LWRASWSLSGNVLALSGGDN--KVTLWKE 283 (297)
T ss_dssp EEEEEECSSSCCEEEEETTS--CEEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCC--cEEEEEE
Confidence 44555554466666666664 5666665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00029 Score=74.28 Aligned_cols=226 Identities=7% Similarity=-0.010 Sum_probs=134.7
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISW 195 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~w 195 (734)
|++.+..++....++..- ....++.|++++++|.|+-... ..|+.++++++........+ ....++++
T Consensus 98 I~~i~~~~~~~~~~~~~~-------~~~~gl~~d~~~~~ly~~D~~~----~~I~r~~~~g~~~~~~~~~~~~~p~glav 166 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLNNL-------ENAIALDFHHRRELVFWSDVTL----DRILRANLNGSNVEEVVSTGLESPGGLAV 166 (386)
T ss_dssp EEEECTTSCCCEEEECSC-------SCEEEEEEETTTTEEEEEETTT----TEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred ceeeccCCCcEEEEecCC-------CccEEEEEecCCCeEEEEeCCC----CcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence 566655444445554321 1256899999888887764332 36999999887532221111 12357889
Q ss_pred EcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCc
Q psy4818 196 THDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGS 275 (734)
Q Consensus 196 SpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 275 (734)
.+.+..||++... ..+|++.++++.. ...+.... ...-.+++++|++.+|+++... ...
T Consensus 167 d~~~g~lY~~d~~---------------~~~I~~~~~dg~~--~~~l~~~~--l~~P~giavdp~~g~ly~td~~--~~~ 225 (386)
T 3v65_B 167 DWVHDKLYWTDSG---------------TSRIEVANLDGAH--RKVLLWQS--LEKPRAIALHPMEGTIYWTDWG--NTP 225 (386)
T ss_dssp ETTTTEEEEEETT---------------TTEEEECBTTSCS--CEEEECSS--CSCEEEEEEETTTTEEEEEECS--SSC
T ss_pred EeCCCeEEEEcCC---------------CCeEEEEeCCCCc--eEEeecCC--CCCCcEEEEEcCCCeEEEeccC--CCC
Confidence 8888888876531 2378888876543 22232221 1233578999999999876532 236
Q ss_pred eEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc
Q psy4818 276 DLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 276 ~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 353 (734)
.|+++++++. ....++. +...-.. .+++++++||+.-. ...+|+++++++.. .+.++... ..
T Consensus 226 ~I~r~~~dG~---------~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~---~~~~~~~~-~~ 289 (386)
T 3v65_B 226 RIEASSMDGS---------GRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSH---RKAVISQG-LP 289 (386)
T ss_dssp EEEEEETTSC---------SCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCS---CEEEECSS-CS
T ss_pred EEEEEeCCCC---------CcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCe---eEEEEECC-CC
Confidence 8999999871 1122222 1111122 38888999998643 34679999998654 24444433 22
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
...++.+ +++.+|++.. +...|.+++..+|+..+.|.
T Consensus 290 ~P~giav-~~~~ly~td~--~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 290 HPFAITV-FEDSLYWTDW--HTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SEEEEEE-ETTEEEEEET--TTTEEEEEETTTCCSCEEEE
T ss_pred CceEEEE-ECCEEEEeeC--CCCeEEEEECCCCcceEEEc
Confidence 2344555 4478887653 33578888865787655543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00034 Score=72.02 Aligned_cols=245 Identities=11% Similarity=0.103 Sum_probs=134.6
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCc---------------------eEEEEEEECCCCCcccccccc--cccCeeEEEcCC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSD---------------------WNTLHIKDVDTGKDYPEVLKN--VKFPSISWTHDH 199 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~---------------------~~~l~v~dl~~g~~~~~~~~~--~~~~~~~wSpDg 199 (734)
.+.+++++|||+.++. +..+.. ...|+++|.++|+.+...... ....+++++|||
T Consensus 25 ~v~~va~d~~G~l~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIF--HRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CEEEEEECTTCCEEEE--ECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CceEEEECCCCCEEEE--eCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3778999999986643 322211 026999999988864322111 123578999999
Q ss_pred cEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec-------CCCCeeEEEEEEecCCcEEEEEEecCC
Q psy4818 200 KGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF-------PNGRSLGLHSEVTDCGRYLLVSTSNNT 272 (734)
Q Consensus 200 ~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~-------~~~~~~~~~~~~SpDG~~l~~~~~~~~ 272 (734)
+ ||++.. ...+|++++..+... .+..+.. ......-.+++++|++..|++... .
T Consensus 103 ~-l~v~d~---------------~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~--~ 163 (329)
T 3fvz_A 103 N-YWVTDV---------------ALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG--Y 163 (329)
T ss_dssp C-EEEEET---------------TTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC--S
T ss_pred C-EEEEEC---------------CCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC--C
Confidence 8 554432 123788888754321 1222211 111113467899994444554432 1
Q ss_pred CCceEEEEeCCCCCCCcccCCCCceeeecc-----------ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCC
Q psy4818 273 QGSDLHYFDLHSLPDGKISGKFPLKTVIPG-----------MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCE 340 (734)
Q Consensus 273 ~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~-----------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 340 (734)
....|++++.++ . ....+.. ...-.. .+++++..||+.... +.+|.+++.+++.
T Consensus 164 ~~~~I~~~~~~g-~---------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---~~~I~~~~~~~G~- 229 (329)
T 3fvz_A 164 CNSRIVQFSPSG-K---------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---NGRIQCFKTDTKE- 229 (329)
T ss_dssp SCCEEEEECTTS-C---------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---TTEEEEEETTTCC-
T ss_pred CCCeEEEEcCCC-C---------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---CCEEEEEECCCCc-
Confidence 236899998654 1 1111110 011122 278887777775432 4579999988554
Q ss_pred CCceEeec-CCCCceeEEEEEeeCCEEEEEEEe-----CCceeEEEEECCCCceeeeeC---CCCceEEeeccCcccceE
Q psy4818 341 KNWKTLIP-EDENRTLDVVAAVANNKLIVHYIQ-----NVRSVMDLHDLNTGKRLHSFP---LDLGQITHISGRRKYNEV 411 (734)
Q Consensus 341 ~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~l~~~dl~~g~~~~~l~---~~~g~v~~~~~~~d~~~l 411 (734)
+...+. .........+.+.. +.++..... .....+++|++.+|+.+..+. .......++.+++++ .+
T Consensus 230 --~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~l 305 (329)
T 3fvz_A 230 --FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TV 305 (329)
T ss_dssp --EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EE
T ss_pred --EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CE
Confidence 233332 21122223333333 444433221 122479999998898877763 223345677788887 66
Q ss_pred EEEEecCCCCceEEEEeC
Q psy4818 412 FYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 412 ~~~~ss~~~P~~~~~~d~ 429 (734)
+++-... ..|+++++
T Consensus 306 yvad~~~---~~I~~~~~ 320 (329)
T 3fvz_A 306 YIGDAHT---NTVWKFTL 320 (329)
T ss_dssp EEEESSS---CCEEEEEE
T ss_pred EEEECCC---CEEEEEeC
Confidence 6654432 37888887
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-07 Score=86.82 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.|+++||..+... .|.. +...|. . +.|+.+|++|.+. ..+|+.+.++.+..
T Consensus 16 ~~~~l~~~hg~~~~~~--~~~~-~~~~l~-~-~~v~~~d~~g~~~----------------~~~~~~~~i~~~~~----- 69 (230)
T 1jmk_C 16 QEQIIFAFPPVLGYGL--MYQN-LSSRLP-S-YKLCAFDFIEEED----------------RLDRYADLIQKLQP----- 69 (230)
T ss_dssp CSEEEEEECCTTCCGG--GGHH-HHHHCT-T-EEEEEECCCCSTT----------------HHHHHHHHHHHHCC-----
T ss_pred CCCCEEEECCCCCchH--HHHH-HHHhcC-C-CeEEEecCCCHHH----------------HHHHHHHHHHHhCC-----
Confidence 3578899999765443 3333 345554 3 9999999997321 13466666655521
Q ss_pred CCcEEEEEcChHHHHHHHHHhcC---CCceeEEEEcCCc
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQR---PELYGAALILVGA 602 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~---p~~~~a~v~~~~~ 602 (734)
.+++.++|||+||.++..++.+. ++.++.+|+..+.
T Consensus 70 ~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~ 108 (230)
T 1jmk_C 70 EGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSY 108 (230)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCC
Confidence 24699999999999999988764 3567777766554
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00035 Score=74.94 Aligned_cols=226 Identities=12% Similarity=0.156 Sum_probs=131.5
Q ss_pred EEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
.++++||++|+..... ..|++||+.+++.+..... ...+..+.| |++.|+....+.
T Consensus 137 ~~~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg---------------- 193 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDS---------------- 193 (435)
T ss_dssp EEEECCSSEEEEEESS-----SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS----------------
T ss_pred EEEEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCC----------------
Confidence 3556699999876542 3699999999885432222 112244555 888777665432
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH 305 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~ 305 (734)
.|.++++.++.. +..+. .+...+..+.|++ ..|+... ....|.+||+.++.. ........+...
T Consensus 194 ~i~vwd~~~~~~--~~~~~--~h~~~v~~l~~~~--~~l~s~s----~dg~i~vwd~~~~~~------~~~~~~~~~~~~ 257 (435)
T 1p22_A 194 TVRVWDVNTGEM--LNTLI--HHCEAVLHLRFNN--GMMVTCS----KDRSIAVWDMASPTD------ITLRRVLVGHRA 257 (435)
T ss_dssp CEEEEESSSCCE--EEEEC--CCCSCEEEEECCT--TEEEEEE----TTSCEEEEECSSSSC------CEEEEEECCCSS
T ss_pred eEEEEECCCCcE--EEEEc--CCCCcEEEEEEcC--CEEEEee----CCCcEEEEeCCCCCC------ceeeeEecCCCC
Confidence 688899887642 22222 2333456677764 4554322 225799999987321 011122222223
Q ss_pred eEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCC
Q psy4818 306 HHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNT 385 (734)
Q Consensus 306 ~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~ 385 (734)
....+..+++.++..+. +..|..+|+.++. ....+... ...+..+.+ + +.++++...+ ..|.+||+.+
T Consensus 258 ~v~~~~~~~~~l~s~~~----dg~i~vwd~~~~~---~~~~~~~~-~~~v~~~~~-~-~~~l~~g~~d--g~i~iwd~~~ 325 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASG----DRTIKVWNTSTCE---FVRTLNGH-KRGIACLQY-R-DRLVVSGSSD--NTIRLWDIEC 325 (435)
T ss_dssp CEEEEEEETTEEEEEET----TSEEEEEETTTCC---EEEEEECC-SSCEEEEEE-E-TTEEEEEETT--SCEEEEETTT
T ss_pred cEEEEEeCCCEEEEEeC----CCeEEEEECCcCc---EEEEEcCC-CCcEEEEEe-C-CCEEEEEeCC--CeEEEEECCC
Confidence 33334558887776554 3569999998765 23233332 233444444 4 3455555555 4799999988
Q ss_pred CceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 386 GKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 386 g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|+.+..+......+..+.+ ++..++ +.+.. +.+..+|+
T Consensus 326 ~~~~~~~~~h~~~v~~~~~--~~~~l~-sg~~d---g~i~vwd~ 363 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRF--DNKRIV-SGAYD---GKIKVWDL 363 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEE-EEETT---SCEEEEEH
T ss_pred CCEEEEEeCCcCcEEEEEe--cCCEEE-EEeCC---CcEEEEEC
Confidence 9887888766666767766 444443 33332 46888888
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00081 Score=69.74 Aligned_cols=225 Identities=7% Similarity=-0.002 Sum_probs=133.6
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISW 195 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~w 195 (734)
|++.+..+...+.++..- ....++.|+++++.|.|+-... ..|+.++++++........+ ....++++
T Consensus 55 I~~i~~~g~~~~~~~~~~-------~~~~~l~~d~~~~~ly~~D~~~----~~I~r~~~~g~~~~~~~~~~~~~p~glav 123 (349)
T 3v64_C 55 IRQVLPHRSEYTLLLNNL-------ENAIALDFHHRRELVFWSDVTL----DRILRANLNGSNVEEVVSTGLESPGGLAV 123 (349)
T ss_dssp EEEECTTSCCEEEEECSC-------SCEEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred eEEEeCCCCeeEEeecCC-------CceEEEEEeccccEEEEEeccC----CceEEEecCCCCceEEEeCCCCCccEEEE
Confidence 666665444444444311 1256889999988887764332 36999999887633221111 12357888
Q ss_pred EcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCc
Q psy4818 196 THDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGS 275 (734)
Q Consensus 196 SpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 275 (734)
.+.+..||++... ...|++.++++... ..+.... ...-.+++++|++.+|+++... ...
T Consensus 124 d~~~g~ly~~d~~---------------~~~I~~~~~dG~~~--~~l~~~~--l~~P~~iavdp~~g~ly~td~~--~~~ 182 (349)
T 3v64_C 124 DWVHDKLYWTDSG---------------TSRIEVANLDGAHR--KVLLWQS--LEKPRAIALHPMEGTIYWTDWG--NTP 182 (349)
T ss_dssp ETTTTEEEEEETT---------------TTEEEEEETTSCSC--EEEECTT--CSCEEEEEEETTTTEEEEEECS--SSC
T ss_pred ecCCCeEEEEcCC---------------CCeEEEEcCCCCce--EEEEeCC--CCCcceEEEecCcCeEEEeccC--CCC
Confidence 8888888887531 23788888876432 2233221 1133578999999998887542 236
Q ss_pred eEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc
Q psy4818 276 DLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 276 ~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 353 (734)
.|+++++++. . ...++. +...-.. .+++++++||+.-. ...+|+++++++.. .+.++... ..
T Consensus 183 ~I~r~~~dG~-~--------~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~---~~~~~~~~-~~ 246 (349)
T 3v64_C 183 RIEASSMDGS-G--------RRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSH---RKAVISQG-LP 246 (349)
T ss_dssp EEEEEETTSC-S--------CEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS---CEEEECSS-CS
T ss_pred EEEEEeCCCC-C--------cEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCc---eEEEEeCC-CC
Confidence 8999999872 1 122221 1111112 38888899998643 24579999998754 24444433 22
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
...++.+. ++.+|++-. +...|.+++..+|+..+.+
T Consensus 247 ~P~giav~-~~~ly~td~--~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 247 HPFAITVF-EDSLYWTDW--HTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SEEEEEEE-TTEEEEEET--TTTEEEEEETTTCCSCEEE
T ss_pred CceEEEEE-CCEEEEecC--CCCeEEEEEccCCCccEEe
Confidence 23344454 478877643 3357888886577765544
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-06 Score=74.20 Aligned_cols=83 Identities=7% Similarity=-0.049 Sum_probs=56.4
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.|.||++| +... .|... |++ +|.|+.+|+||.|.... . .. . ++++.+.+..+++. .+.
T Consensus 22 ~~~vv~~H-~~~~----~~~~~----l~~-~~~v~~~d~~G~G~s~~---~-----~~-~-~~~~~~~~~~~~~~--~~~ 79 (131)
T 2dst_A 22 GPPVLLVA-EEAS----RWPEA----LPE-GYAFYLLDLPGYGRTEG---P-----RM-A-PEELAHFVAGFAVM--MNL 79 (131)
T ss_dssp SSEEEEES-SSGG----GCCSC----CCT-TSEEEEECCTTSTTCCC---C-----CC-C-HHHHHHHHHHHHHH--TTC
T ss_pred CCeEEEEc-CCHH----HHHHH----HhC-CcEEEEECCCCCCCCCC---C-----CC-C-HHHHHHHHHHHHHH--cCC
Confidence 57899999 2221 22221 554 79999999999554321 1 01 1 66666666655554 244
Q ss_pred CcEEEEEcChHHHHHHHHHhcCCCc
Q psy4818 568 KYITIMGGSNGGLLVGACLNQRPEL 592 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~p~~ 592 (734)
+++.++|+|+||.++..++.++|.+
T Consensus 80 ~~~~lvG~S~Gg~~a~~~a~~~p~l 104 (131)
T 2dst_A 80 GAPWVLLRGLGLALGPHLEALGLRA 104 (131)
T ss_dssp CSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred CccEEEEEChHHHHHHHHHhcCCcE
Confidence 6899999999999999999999963
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-05 Score=91.66 Aligned_cols=246 Identities=9% Similarity=0.020 Sum_probs=136.8
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCC--CcEEEEEEeCCCCceEEEEEE
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDN--GKHFAYCLSKSGSDWNTLHIK 173 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPD--G~~la~~~~~~g~~~~~l~v~ 173 (734)
..++|.+++-...+ ..-.+|-... +..+.+... .++...+..++|||+ |++|+.+.. + ..|++|
T Consensus 17 ~s~dg~~latg~~d---g~I~vwd~~~--~~~~~~~~l----~~h~~~V~~l~~s~~~~~~~l~s~s~-D----g~I~vw 82 (753)
T 3jro_A 17 LDYYGKRLATCSSD---KTIKIFEVEG--ETHKLIDTL----TGHEGPVWRVDWAHPKFGTILASCSY-D----GKVLIW 82 (753)
T ss_dssp CCSSSCCEEEEETT---TEEEEEEEET--TEEEEEEEE----CCCSSCEEEEEECCTTSCSEEEEEET-T----SCEEEE
T ss_pred ECCCCCeEEEEECC---CcEEEEecCC--CCCccceec----cCCcCceEEEEecCCCCCCEEEEEeC-C----CeEEEE
Confidence 34677766654322 2345564432 222222211 123345889999999 998886654 2 359999
Q ss_pred ECCCCCc--cc-ccccccccCeeEEEcC--CcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCC
Q psy4818 174 DVDTGKD--YP-EVLKNVKFPSISWTHD--HKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG 248 (734)
Q Consensus 174 dl~~g~~--~~-~~~~~~~~~~~~wSpD--g~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~ 248 (734)
|+.+++. +. .......+..+.|+|+ |+.|+....+. .|+++++.+........... +
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg----------------~I~vwdl~~~~~~~~~~~~~--~ 144 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG----------------KVSVVEFKENGTTSPIIIDA--H 144 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS----------------EEEEEECCSSSCCCCEEEEC--C
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC----------------cEEEEEeecCCCcceeEeec--C
Confidence 9998862 21 1112223468999999 88887776432 78899988764333333332 3
Q ss_pred CeeEEEEEEec-------------CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEec-
Q psy4818 249 RSLGLHSEVTD-------------CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANN- 313 (734)
Q Consensus 249 ~~~~~~~~~Sp-------------DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~d- 313 (734)
...+..+.|+| ||+.|+.... ...|++||+.++... . .....+..+....... |+|+
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~-~---~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQT-Y---VLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEET----TSCEEEEEEETTTTE-E---EEEEEECCCSSCEEEEEECCCC
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEEC----CCeEEEEeccCCccc-c---eeeeeecCCCCcEEEEEeccCC
Confidence 33567889999 5888775432 256899998763110 0 0011122222233333 8999
Q ss_pred --CCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC-CCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCc
Q psy4818 314 --GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 314 --g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
|+.++..+. ++.|..||+.++.......+... .....+..+.+..++..+++...+ ..|++|++.++.
T Consensus 217 ~~~~~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D--g~I~vwd~~~~~ 287 (753)
T 3jro_A 217 LLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD--NKVTLWKENLEG 287 (753)
T ss_dssp SSSEEEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS--SCEECCBCCSSS
T ss_pred CCCCEEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC--CEEEEEecCCCC
Confidence 565554443 24588888876531111122221 112334444554446666666555 468899986443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-05 Score=80.12 Aligned_cols=246 Identities=9% Similarity=-0.029 Sum_probs=124.5
Q ss_pred CCCCcEEEEEEeCCCCc-eEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEE
Q psy4818 150 SDNGKHFAYCLSKSGSD-WNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 228 (734)
Q Consensus 150 SPDG~~la~~~~~~g~~-~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~ 228 (734)
.||++++ |+.+.+... ...|.++|+++++.+....-+... ++.+||||++||.+....... ........|.
T Consensus 81 ~~~~~~v-yV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~------~~G~~~~~Vs 152 (426)
T 3c75_H 81 APDARRV-YIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERI------ARGKRTDYVE 152 (426)
T ss_dssp CCCTTEE-EEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEET------TEEEEEEEEE
T ss_pred CCCCCEE-EEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEecccccc------ccCCCCCEEE
Confidence 5788875 555543211 168999999999876433333344 899999999998776311000 0000123677
Q ss_pred EEECCCCCCCCeeEEe-c-----CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 229 YHVLGTEQDKDIPVVE-F-----PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 229 ~~~l~t~~~~~~~v~~-~-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
+++..+......+... . ...+ .++.+||||++|++.... ..+.|.++|+.++. ....+.-
T Consensus 153 viD~~t~~vv~~I~v~g~~r~~~g~~P---~~~~~spDGk~lyV~n~~--~~~~VsVID~~t~k---------vv~~I~v 218 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAPRFLVGTYQ---WMNALTPDNKNLLFYQFS--PAPAVGVVDLEGKT---------FDRMLDV 218 (426)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCG---GGSEECTTSSEEEEEECS--SSCEEEEEETTTTE---------EEEEEEC
T ss_pred EEECCCCcEEEEEECCCccccccCCCc---ceEEEcCCCCEEEEEecC--CCCeEEEEECCCCe---------EEEEEEc
Confidence 7777765422111111 0 0112 257899999999876421 23689999998821 1111110
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceE----eecCCCCce-eEEEEEeeCCEEEEEEEeCCcee
Q psy4818 303 MDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT----LIPEDENRT-LDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 303 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~----l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
. ......|+|+..|+.... ++++..+++.++. ... ++.-..... .......+++++++... . ..
T Consensus 219 -~-g~~~~~p~g~~~~v~~~~---dG~~~~V~~~~~~---v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~--g~ 287 (426)
T 3c75_H 219 -P-DCYHIFPASPTVFYMNCR---DGSLARVDFADGE---TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-T--GK 287 (426)
T ss_dssp -C-SEEEEEEEETTEEEEEET---TSSEEEEECCTTC---CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-T--SE
T ss_pred -C-CceeeccCCCcEEEEEcC---CCCEEEEECCCCc---EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-C--Cc
Confidence 0 111244555555444332 2345555553332 110 111111111 11111223356665542 2 47
Q ss_pred EEEEECCCCceeeeeC---C------CCceE----EeeccCcccceEEEEEecCC------CCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFP---L------DLGQI----THISGRRKYNEVFYGFTSFL------QPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~---~------~~g~v----~~~~~~~d~~~l~~~~ss~~------~P~~~~~~d~ 429 (734)
++++|+.+++. ..+. . ..+.. ..+.++++++++|+...... ....+..+|+
T Consensus 288 V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 288 IFQADLTAEGA-TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp EEEEEECSSCE-EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEEeccCCce-EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 89998854432 1111 0 01111 12456788888888764321 1246999999
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00027 Score=72.78 Aligned_cols=224 Identities=10% Similarity=-0.027 Sum_probs=127.8
Q ss_pred EEEEeCC--CCceEEEEEEECCCCCccccccc-----c--cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEE
Q psy4818 157 AYCLSKS--GSDWNTLHIKDVDTGKDYPEVLK-----N--VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 227 (734)
Q Consensus 157 a~~~~~~--g~~~~~l~v~dl~~g~~~~~~~~-----~--~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l 227 (734)
+|.+..+ |.+...|.++|.++++....... . ....++.+ +++.+|.+... ...|
T Consensus 4 ~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~---------------~~~v 66 (328)
T 3dsm_A 4 LFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNN---------------SHVI 66 (328)
T ss_dssp EEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGG---------------GTEE
T ss_pred EEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcC---------------CCEE
Confidence 3555544 34456899999999985432110 0 00123443 56777766532 2378
Q ss_pred EEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc----
Q psy4818 228 YYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM---- 303 (734)
Q Consensus 228 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~---- 303 (734)
.+++..+.... ..+.... ....+++++|| .|++... ....|+++|++++. + ...+..+.
T Consensus 67 ~viD~~t~~~~--~~i~~~~---~p~~i~~~~~g-~lyv~~~---~~~~v~~iD~~t~~---~-----~~~i~~g~~~~~ 129 (328)
T 3dsm_A 67 FAIDINTFKEV--GRITGFT---SPRYIHFLSDE-KAYVTQI---WDYRIFIINPKTYE---I-----TGYIECPDMDME 129 (328)
T ss_dssp EEEETTTCCEE--EEEECCS---SEEEEEEEETT-EEEEEEB---SCSEEEEEETTTTE---E-----EEEEECTTCCTT
T ss_pred EEEECcccEEE--EEcCCCC---CCcEEEEeCCC-eEEEEEC---CCCeEEEEECCCCe---E-----EEEEEcCCcccc
Confidence 88898876421 1122222 33567899999 5555431 23689999998731 0 11111111
Q ss_pred --cceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC-------
Q psy4818 304 --DHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV------- 374 (734)
Q Consensus 304 --~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 374 (734)
....-.+ +++++|+... +....|.++|+++.+ +...++.. .. ...+.+..++++++....+.
T Consensus 130 ~~~p~~i~~--~~~~lyv~~~--~~~~~v~viD~~t~~---~~~~i~~g-~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 130 SGSTEQMVQ--YGKYVYVNCW--SYQNRILKIDTETDK---VVDELTIG-IQ-PTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TCBCCCEEE--ETTEEEEEEC--TTCCEEEEEETTTTE---EEEEEECS-SC-BCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred CCCcceEEE--ECCEEEEEcC--CCCCEEEEEECCCCe---EEEEEEcC-CC-ccceEEcCCCCEEEEECCCccCCcccc
Confidence 1111113 6788887643 113469999998765 23333322 11 12333444467777654321
Q ss_pred -ceeEEEEECCCCceeeeeCCCCc-eEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 375 -RSVMDLHDLNTGKRLHSFPLDLG-QITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 375 -~~~l~~~dl~~g~~~~~l~~~~g-~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...|+++|.++++..+.+..+.+ ....+.++++++.+++..+ .++++|+
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~------~v~~~d~ 251 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN------DIWRMPV 251 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS------SEEEEET
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc------EEEEEEC
Confidence 25799999988887666665422 3457888888888876532 7999999
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=5.7e-07 Score=95.61 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=75.8
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCe---EEEEEecccCCCC----------Cchhhhccc-----------
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNG---IYAIPNIRGGGEL----------GEDWHNAGR----------- 541 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~---~v~~~~~rG~~~~----------g~~~~~~~~----------- 541 (734)
...|.||++||..+... .|.. +...|+++|| .|+++|+||.|.. |. ....+.
T Consensus 20 ~~~ppVVLlHG~g~s~~--~w~~-la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~-~~~~G~n~~p~id~~~l 95 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGSAG--QFES-QGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGL-GSEFGLNISQIIDPETL 95 (484)
T ss_dssp -CCCCEEEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTG-GGHHHHHHGGGSCHHHH
T ss_pred CCCCEEEEECCCCCCHH--HHHH-HHHHHHHcCCCcceEEEEECCCCCcccccccccccccc-ccccccccccccccccc
Confidence 35678899999865543 3443 4566777899 6999999995421 00 000000
Q ss_pred --------cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEEEcCCcch
Q psy4818 542 --------LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE---LYGAALILVGALD 604 (734)
Q Consensus 542 --------~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v~~~~~~d 604 (734)
.......++++.+.++.++++ ...+++.++|||+||.+++.++.++|+ .++++|+.+|..+
T Consensus 96 ~~v~~~~~~~~~~~~~~dla~~L~~ll~~--lg~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 96 DKILSKSRERLIDETFSRLDRVIDEALAE--SGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred cccccccccCchhhhHHHHHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 001123456777777777765 233689999999999999999999873 7899998887654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00033 Score=69.37 Aligned_cols=235 Identities=10% Similarity=0.077 Sum_probs=124.1
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
...++.++|||+ |.++.+..+ ..|+++|..++......... ....++++++||+ |+++..
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-------------- 85 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMY---GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-------------- 85 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSS---CEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET--------------
T ss_pred CccceEECCCCC-EEEEccCCC---CcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC--------------
Confidence 356789999998 444243222 46888988766532211111 2336789999997 555432
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
...|++++..+... ..+... ......++.++|||+ |++... ....|++++..+.. . ......
T Consensus 86 --~~~i~~~d~~~~~~---~~~~~~-~~~~p~~i~~~~~g~-l~v~~~---~~~~i~~~~~~~~~-~-------~~~~~~ 147 (270)
T 1rwi_B 86 --NNRVVTLAAGSNNQ---TVLPFD-GLNYPEGLAVDTQGA-VYVADR---GNNRVVKLAAGSKT-Q-------TVLPFT 147 (270)
T ss_dssp --TTEEEEECTTCSCC---EECCCC-SCSSEEEEEECTTCC-EEEEEG---GGTEEEEECTTCCS-C-------EECCCC
T ss_pred --CCEEEEEeCCCceE---eeeecC-CcCCCcceEECCCCC-EEEEEC---CCCEEEEEECCCce-e-------Eeeccc
Confidence 22688888765432 111111 112346789999998 444322 22578888765411 0 000011
Q ss_pred cccceE-EEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 302 GMDHHH-EIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 302 ~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
...... -.++++|+ +|+.... ...|++++.++.. ..............+.+..++.+++.... ...|++
T Consensus 148 ~~~~p~~i~~~~~g~-l~v~~~~---~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~d~~g~l~v~~~~--~~~v~~ 217 (270)
T 1rwi_B 148 GLNDPDGVAVDNSGN-VYVTDTD---NNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHN--TNQVVK 217 (270)
T ss_dssp SCCSCCCEEECTTCC-EEEEEGG---GTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETT--TSCEEE
T ss_pred cCCCceeEEEeCCCC-EEEEECC---CCEEEEEecCCCc----eEeecccCCCCceEEEECCCCCEEEEECC--CCcEEE
Confidence 111111 13677776 6665432 3469999987654 22222221133445555554577766533 357999
Q ss_pred EECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.. +.....+... .....++..++++. ++++.... ..+..+++
T Consensus 218 ~~~~-~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~---~~v~~~~~ 262 (270)
T 1rwi_B 218 LLAG-STTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGN---DRVVKLTS 262 (270)
T ss_dssp ECTT-CSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGG---TEEEEECC
T ss_pred EcCC-CCcceeeccCCCCCceeEEECCCCC-EEEEECCC---CEEEEEcC
Confidence 9984 4432333222 23455677777774 66665433 36888887
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-05 Score=83.11 Aligned_cols=117 Identities=11% Similarity=0.016 Sum_probs=75.5
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC--------Ccc---cccc-cccccCeeEEEcC-CcEEEEEEEec
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG--------KDY---PEVL-KNVKFPSISWTHD-HKGFFYNQYCD 209 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g--------~~~---~~~~-~~~~~~~~~wSpD-g~~l~y~~~~~ 209 (734)
.+..++|||||++||.... .|+....|++||+.++ +.+ .... ....+..++|+|+ ++.|+-...+.
T Consensus 94 ~v~~l~~spdg~~lav~~~-sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMM-SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp CEEEEEECTTSCEEEEEEE-ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred cccEEEEcCCCCEEEEEEe-ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 3788999999999997542 2345578999998765 111 1111 1223468999998 55555554322
Q ss_pred CCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 210 INGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.|++|++.++. .+.....+...+..++|||||++|+.... ...|.+||+..
T Consensus 173 ----------------~v~iwD~~~~~----~~~~~~~~~~~v~~v~wspdg~~lasgs~----dg~v~iwd~~~ 223 (434)
T 2oit_A 173 ----------------SIAVLQVTETV----KVCATLPSTVAVTSVCWSPKGKQLAVGKQ----NGTVVQYLPTL 223 (434)
T ss_dssp ----------------CEEEEEESSSE----EEEEEECGGGCEEEEEECTTSSCEEEEET----TSCEEEECTTC
T ss_pred ----------------eEEEEEcCCCc----ceeeccCCCCceeEEEEcCCCCEEEEEcC----CCcEEEEccCC
Confidence 68888887652 12221122335678999999999986442 25799999873
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=90.10 Aligned_cols=207 Identities=10% Similarity=-0.018 Sum_probs=104.2
Q ss_pred EEEEecC--CCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHH-HHHHHcCCCC
Q psy4818 490 VIIYGYG--GYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAA-EYMINKKYTK 566 (734)
Q Consensus 490 ~vv~~hG--g~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d 566 (734)
.|+++|| +.+. ...|.. +...|. .++.|+.+|.||.|....+.. .....+++++.+.+ +.+... ..
T Consensus 91 ~l~~~hg~g~~~~--~~~~~~-l~~~L~-~~~~v~~~d~~G~g~~~~~~~-----~~~~~~~~~~a~~~~~~i~~~--~~ 159 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFLR-LSTSFQ-EERDFLAVPLPGYGTGTGTGT-----ALLPADLDTALDAQARAILRA--AG 159 (319)
T ss_dssp EEEEECCCCTTCS--TTTTHH-HHHTTT-TTCCEEEECCTTCCBC---CB-----CCEESSHHHHHHHHHHHHHHH--HT
T ss_pred cEEEeCCCCCCCc--HHHHHH-HHHhcC-CCCceEEecCCCCCCCccccc-----CCCCCCHHHHHHHHHHHHHHh--cC
Confidence 7899997 3332 223443 445565 599999999999543100000 01123344444332 222221 12
Q ss_pred CCcEEEEEcChHHHHHHHHHhcC----CCceeEEEEcCCcchhccc-c-cc--ccCcccccccCCCCCHHHHHHHHhCCc
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQR----PELYGAALILVGALDMLRF-N-KF--TIAYYSESEFGSPNNKTHFHNLLSYSP 638 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~----p~~~~a~v~~~~~~d~~~~-~-~~--~~~~~~~~~~g~~~~~~~~~~~~~~sp 638 (734)
..++.++|+|+||.++..++.+. ++.++.+|+..+....... . .+ .+...+....-.+.....+..+..+.-
T Consensus 160 ~~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
T 2hfk_A 160 DAPVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYAR 239 (319)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHH
Confidence 35699999999999999998775 3457777766553211000 0 00 000000000111111222221111100
Q ss_pred ---cCCCCCCCCCccCCcEEEEecCCCCCCCChH-HHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC-CCchHHhHHH
Q psy4818 639 ---LHNIKVPPNNTQYPATLVLTGDHDDRVPPLH-SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ-GTPLMKSIEE 713 (734)
Q Consensus 639 ---~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~ 713 (734)
-.... .++.| +|+++| .|..+++.. ...+ ... ....++++.++ +||.. .... ..+.
T Consensus 240 ~~~~~~~~----~i~~P-vl~i~g-~D~~~~~~~~~~~~----~~~------~~~~~~~~~v~-g~H~~~~~e~--~~~~ 300 (319)
T 2hfk_A 240 FLAGPRPG----RSSAP-VLLVRA-SEPLGDWQEERGDW----RAH------WDLPHTVADVP-GDHFTMMRDH--APAV 300 (319)
T ss_dssp HHHSCCCC----CCCSC-EEEEEE-SSCSSCCCGGGCCC----SCC------CSSCSEEEEES-SCTTHHHHTC--HHHH
T ss_pred HHHhCCCC----CcCCC-EEEEEc-CCCCCCccccccch----hhc------CCCCCEEEEeC-CCcHHHHHHh--HHHH
Confidence 01112 26777 999999 899888765 2221 111 12345777888 59974 2121 2355
Q ss_pred HHHHHHHHHHHcC
Q psy4818 714 MTDIYVFLMKSLG 726 (734)
Q Consensus 714 ~~~~~~fl~~~l~ 726 (734)
...+.+||.+...
T Consensus 301 ~~~i~~~L~~~~~ 313 (319)
T 2hfk_A 301 AEAVLSWLDAIEG 313 (319)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC
Confidence 5667888877543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00026 Score=71.53 Aligned_cols=245 Identities=9% Similarity=0.033 Sum_probs=126.4
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEE
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIK 173 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~ 173 (734)
+++.++|+.+|++-... ..|++.+..++ .+.+..+. ....+++++|||+.++ ..... ..|+++
T Consensus 33 ~~~d~~g~~l~~~~~~~----~~i~~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg~l~v--~~~~~---~~i~~~ 95 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQ----NRTWAWSDDGQ-LSPEMHPS-------HHQNGHCLNKQGHLIA--CSHGL---RRLERQ 95 (296)
T ss_dssp EEEEGGGTEEEEEEGGG----TEEEEEETTSC-EEEEESSC-------SSEEEEEECTTCCEEE--EETTT---TEEEEE
T ss_pred CeEeCCCCEEEEEeCCC----CEEEEEECCCC-eEEEECCC-------CCcceeeECCCCcEEE--EecCC---CeEEEE
Confidence 34446677777776443 24777776555 45444322 1256899999999543 22221 369999
Q ss_pred ECCCCCcccccc--cc---cccCeeEEEcCCcEEEEEEEe-cCCCCCCCC-cccccCCcEEEEEECCCCCCCCeeEEecC
Q psy4818 174 DVDTGKDYPEVL--KN---VKFPSISWTHDHKGFFYNQYC-DINGTADGT-ETTAHMGQKIYYHVLGTEQDKDIPVVEFP 246 (734)
Q Consensus 174 dl~~g~~~~~~~--~~---~~~~~~~wSpDg~~l~y~~~~-~~~~~~~~~-~~~~~~~~~l~~~~l~t~~~~~~~v~~~~ 246 (734)
|.++|+...... .. .....++++|||+ |+++... .......+. .........||+++.+ +. ...+..
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~-- 169 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIR-- 169 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEEC--
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeec--
Confidence 998887432211 11 1235689999996 5554210 000000000 0000112478888765 21 112222
Q ss_pred CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccc---eEEEEEecCCeEEEEeCC
Q psy4818 247 NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH---HHEIIANNGPELIVKTTK 323 (734)
Q Consensus 247 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~---~~~~~s~dg~~l~~~s~~ 323 (734)
......+++|||||+.| +... ....|+++++.. . ..+. .-..++ .... ..-.++++|. ||+.+
T Consensus 170 -~~~~~~gi~~s~dg~~l-v~~~---~~~~i~~~~~~~-~-g~~~---~~~~~~-~~~~~~p~~i~~d~~G~-l~v~~-- 235 (296)
T 3e5z_A 170 -DRVKPNGLAFLPSGNLL-VSDT---GDNATHRYCLNA-R-GETE---YQGVHF-TVEPGKTDGLRVDAGGL-IWASA-- 235 (296)
T ss_dssp -CCSSEEEEEECTTSCEE-EEET---TTTEEEEEEECS-S-SCEE---EEEEEE-CCSSSCCCSEEEBTTSC-EEEEE--
T ss_pred -CCCCCccEEECCCCCEE-EEeC---CCCeEEEEEECC-C-CcCc---CCCeEe-eCCCCCCCeEEECCCCC-EEEEc--
Confidence 12244678999999998 5432 236899999863 1 1110 001122 1111 1123778876 66655
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-e-eCCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-V-ANNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
...|++++.++.. ...+..... +..+.+ . +++.|++.. .+ .|+.+++++.+.
T Consensus 236 ---~~~v~~~~~~g~~----~~~~~~~~~--~~~~~f~~~d~~~L~v~t-~~---~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPDGDE----LGRVLTPQT--TSNLCFGGPEGRTLYMTV-ST---EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTTSCE----EEEEECSSC--CCEEEEESTTSCEEEEEE-TT---EEEEEECSCCBC
T ss_pred ---CCeEEEECCCCCE----EEEEECCCC--ceeEEEECCCCCEEEEEc-CC---eEEEEEcccccc
Confidence 2469999987432 223332212 333434 2 324566554 33 599999865543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0015 Score=64.82 Aligned_cols=227 Identities=8% Similarity=0.056 Sum_probs=128.3
Q ss_pred CcEEEEEEeCCCCceEEEEEEECCCCCcccc------cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcE
Q psy4818 153 GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE------VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQK 226 (734)
Q Consensus 153 G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~------~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 226 (734)
|.+|.|+.. ..|+.+++.++..... ........+++|+|+++.||++... ..+
T Consensus 1 ~~~l~~~~~------~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~---------------~~~ 59 (267)
T 1npe_A 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS---------------EPS 59 (267)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT---------------TTE
T ss_pred CcEEEEEcC------CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC---------------CCE
Confidence 567777652 4799999887653211 0111123589999999888887531 247
Q ss_pred EEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccc
Q psy4818 227 IYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDH 305 (734)
Q Consensus 227 l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~ 305 (734)
|+++++.+... ..+.... ...-.+++++|+++.|++... ....|+++++++. . ...+.. +...
T Consensus 60 I~~~~~~g~~~--~~~~~~~--~~~p~~ia~d~~~~~lyv~d~---~~~~I~~~~~~g~-~--------~~~~~~~~~~~ 123 (267)
T 1npe_A 60 IGRASLHGGEP--TTIIRQD--LGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDGT-Q--------RRVLFDTGLVN 123 (267)
T ss_dssp EEEEESSSCCC--EEEECTT--CCCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC-S--------CEEEECSSCSS
T ss_pred EEEEecCCCCc--EEEEECC--CCCccEEEEEecCCeEEEEEC---CCCEEEEEEcCCC-C--------EEEEEECCCCC
Confidence 89998876532 2222211 123457899999998887643 2368999998762 1 122221 1111
Q ss_pred eEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee-CCEEEEEEEeCCceeEEEEEC
Q psy4818 306 HHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA-NNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 306 ~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~l~~~dl 383 (734)
-.. .++++++.||+.... ....+|+++++++.. .+.+.... -....++.+.. ++.+|++... ...|+++++
T Consensus 124 P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~~---~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~ 196 (267)
T 1npe_A 124 PRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTN---RRILAQDN-LGLPNGLTFDAFSSQLCWVDAG--THRAECLNP 196 (267)
T ss_dssp EEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCC---CEEEECTT-CSCEEEEEEETTTTEEEEEETT--TTEEEEEET
T ss_pred ccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCCC---cEEEEECC-CCCCcEEEEcCCCCEEEEEECC--CCEEEEEec
Confidence 122 388888888876532 224579999987643 23333222 22334555543 4677776533 368999999
Q ss_pred CCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 384 NTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 384 ~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. |...+.+........+++ .+++.++++-.. ...++++|.
T Consensus 197 ~-g~~~~~~~~~~~~P~gi~--~d~~~lyva~~~---~~~v~~~d~ 236 (267)
T 1npe_A 197 A-QPGRRKVLEGLQYPFAVT--SYGKNLYYTDWK---TNSVIAMDL 236 (267)
T ss_dssp T-EEEEEEEEECCCSEEEEE--EETTEEEEEETT---TTEEEEEET
T ss_pred C-CCceEEEecCCCCceEEE--EeCCEEEEEECC---CCeEEEEeC
Confidence 4 443232211111122333 345667664332 247888888
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-06 Score=85.75 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=67.7
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHH-HHHHHHcCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA-AEYMINKKY 564 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~ 564 (734)
+..|.|+++||+.+... .|.. +...|. .++.|+.+|.+|.+. ... ...+++++.+. ++.+.+..
T Consensus 99 g~~~~l~~lhg~~~~~~--~~~~-l~~~L~-~~~~v~~~d~~g~~~---~~~-------~~~~~~~~a~~~~~~i~~~~- 163 (329)
T 3tej_A 99 GNGPTLFCFHPASGFAW--QFSV-LSRYLD-PQWSIIGIQSPRPNG---PMQ-------TAANLDEVCEAHLATLLEQQ- 163 (329)
T ss_dssp CSSCEEEEECCTTSCCG--GGGG-GGGTSC-TTCEEEEECCCTTTS---HHH-------HCSSHHHHHHHHHHHHHHHC-
T ss_pred CCCCcEEEEeCCcccch--HHHH-HHHhcC-CCCeEEEeeCCCCCC---CCC-------CCCCHHHHHHHHHHHHHHhC-
Confidence 44678999999766543 3433 234454 489999999998432 211 11245555443 33443321
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhc---CCCceeEEEEcCCcc
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQ---RPELYGAALILVGAL 603 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~---~p~~~~a~v~~~~~~ 603 (734)
..+++.++|||+||.++..++.+ +|+..+.+|+..+..
T Consensus 164 -~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~ 204 (329)
T 3tej_A 164 -PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWP 204 (329)
T ss_dssp -SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCC
T ss_pred -CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCC
Confidence 22479999999999999999988 899998888776544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.5e-05 Score=83.95 Aligned_cols=220 Identities=7% Similarity=0.018 Sum_probs=122.5
Q ss_pred EeeEEeCCC------CcEEEEEEeCCCCceEEEEEEECCCCCcc------------cccccccccCeeEEEcCCcEEEEE
Q psy4818 144 LKLYAFSDN------GKHFAYCLSKSGSDWNTLHIKDVDTGKDY------------PEVLKNVKFPSISWTHDHKGFFYN 205 (734)
Q Consensus 144 ~~~~~~SPD------G~~la~~~~~~g~~~~~l~v~dl~~g~~~------------~~~~~~~~~~~~~wSpDg~~l~y~ 205 (734)
+..++|||+ |++||-+.. . .+|++||+.+++.. ...........++|+|++ .|+..
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~-D----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQ-E----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEET-T----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred EEEEEECCCCCCCCCCceEEEEec-C----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 678999997 567775543 2 36999999877522 001111234678999875 56555
Q ss_pred EEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEE--EEecCC-cEEEEEEecCCCCceEEEEeC
Q psy4818 206 QYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS--EVTDCG-RYLLVSTSNNTQGSDLHYFDL 282 (734)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~--~~SpDG-~~l~~~~~~~~~~~~i~~~d~ 282 (734)
..+ ..|.+|++.++... ...+.. +...+.++ .|+||| +.|+ +.+. ...|.+||+
T Consensus 284 s~D----------------gtV~lWD~~~~~~~-~~~~~~--H~~~V~sv~~~~s~~g~~~la-S~S~---D~tvklWD~ 340 (524)
T 2j04_B 284 FKN----------------GFVAEFDLTDPEVP-SFYDQV--HDSYILSVSTAYSDFEDTVVS-TVAV---DGYFYIFNP 340 (524)
T ss_dssp ETT----------------SEEEEEETTBCSSC-SEEEEC--SSSCEEEEEEECCTTSCCEEE-EEET---TSEEEEECG
T ss_pred eCC----------------CEEEEEECCCCCCc-eEEeec--ccccEEEEEEEcCCCCCeEEE-Eecc---CCeEEEEEC
Confidence 433 27999999865321 222333 22345566 678998 5554 4332 268999998
Q ss_pred CCCCCCcccCCCCceeeecccc--ceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEE
Q psy4818 283 HSLPDGKISGKFPLKTVIPGMD--HHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVA 359 (734)
Q Consensus 283 ~~~~~~~l~~~~~~~~l~~~~~--~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~ 359 (734)
.++. ....+..... .... .|+|+++.++..+. ...|.++|+.++.. ...+..+. ..+..+.
T Consensus 341 ~~~~--------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~--~~~l~gH~--~~V~sva 404 (524)
T 2j04_B 341 KDIA--------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFA--VHPLVSRE--TTITAIG 404 (524)
T ss_dssp GGHH--------HHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTC--CEEEEECS--SCEEEEE
T ss_pred CCCC--------cccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECccccc--ceeeecCC--CceEEEE
Confidence 7621 1112221111 1122 39999887553322 23588899876541 24444433 3445555
Q ss_pred EeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-----CceEEeeccCcccceE
Q psy4818 360 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-----LGQITHISGRRKYNEV 411 (734)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-----~g~v~~~~~~~d~~~l 411 (734)
+..++.++++...++ .+.+||+. ++.+..+... ...+..+.++++++.+
T Consensus 405 ~Sp~g~~l~Sgs~Dg--tv~lwd~~-~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADG--SLIITNAA-RRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTT--EEECCBSC-SSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCC--EEEEEech-HhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 555466677777664 68888874 3222211100 1124466777777633
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00047 Score=71.42 Aligned_cols=115 Identities=9% Similarity=0.031 Sum_probs=70.4
Q ss_pred cCeeEEEcC---CcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEE
Q psy4818 190 FPSISWTHD---HKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLV 266 (734)
Q Consensus 190 ~~~~~wSpD---g~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~ 266 (734)
+..++|+|| |+.|+....+. .|.+|++.+........+.. +...+..+.|+|||++|+.
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg----------------~i~iw~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWAN----------------DVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTS----------------EEEEEEECTTSCEEEEEEEE--CSSCEEEEEECTTSSEEEE
T ss_pred eEEEEEcCCCCCceEEEEECCCC----------------cEEEEEcCCCCceeEEEecc--ccCCEEEEEECcCCCEEEE
Confidence 468999999 57776655332 68888887633221122322 2335678999999999885
Q ss_pred EEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-E--EecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 267 STSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-I--ANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 267 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~--s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
... ...|.+||+.++ ....+.......... | +++++.|+..+. +..|..+|+.++.
T Consensus 104 ~~~----dg~v~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSN---------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW----DKTLKFWDTRSSN 162 (368)
T ss_dssp EET----TSEEEEEETTTT---------EEEEEEECSSCEEEEEEEECSSCEEEEEEET----TSEEEEECSSCSS
T ss_pred EcC----CCcEEEEEcCCC---------CceeeccccCceEEEEEEeCCCCCEEEEccC----CCcEEEEECCCCc
Confidence 432 258999999872 122233333333333 6 677665655443 3468888887654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0052 Score=65.82 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=128.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..+.|+ ++.|+.... + ..|++||+.+++.+..... ......+.| +++.|+....+
T Consensus 160 ~~v~~~~~~--~~~l~s~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~d------------ 218 (445)
T 2ovr_B 160 GGVWSSQMR--DNIIISGST-D----RTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRD------------ 218 (445)
T ss_dssp SCEEEEEEE--TTEEEEEET-T----SCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETT------------
T ss_pred CCEEEEEec--CCEEEEEeC-C----CeEEEEECCcCcEEEEECCCCCcEEEEEe--cCCEEEEEeCC------------
Confidence 346677776 556665432 3 3699999999875432221 112345666 45666665533
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
..|.++++.++.. +..+.. +......+.+ ||++|+.... ...|.+||+.++ .....+.
T Consensus 219 ----g~i~~wd~~~~~~--~~~~~~--~~~~v~~~~~--~~~~l~~~~~----dg~i~iwd~~~~--------~~~~~~~ 276 (445)
T 2ovr_B 219 ----ATLRVWDIETGQC--LHVLMG--HVAAVRCVQY--DGRRVVSGAY----DFMVKVWDPETE--------TCLHTLQ 276 (445)
T ss_dssp ----SEEEEEESSSCCE--EEEEEC--CSSCEEEEEE--CSSCEEEEET----TSCEEEEEGGGT--------EEEEEEC
T ss_pred ----CEEEEEECCCCcE--EEEEcC--CcccEEEEEE--CCCEEEEEcC----CCEEEEEECCCC--------cEeEEec
Confidence 2788999877542 222322 2223445555 8888775432 257899998772 1122222
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
........+..+++.++..+.. ..|..+|+.++. ....+... ...+..+.+ +++ .+++...+ ..|.+
T Consensus 277 -~~~~~v~~~~~~~~~l~~~~~d----~~i~i~d~~~~~---~~~~~~~~-~~~v~~~~~-~~~-~l~~~~~d--g~i~v 343 (445)
T 2ovr_B 277 -GHTNRVYSLQFDGIHVVSGSLD----TSIRVWDVETGN---CIHTLTGH-QSLTSGMEL-KDN-ILVSGNAD--STVKI 343 (445)
T ss_dssp -CCSSCEEEEEECSSEEEEEETT----SCEEEEETTTCC---EEEEECCC-CSCEEEEEE-ETT-EEEEEETT--SCEEE
T ss_pred -CCCCceEEEEECCCEEEEEeCC----CeEEEEECCCCC---EEEEEcCC-cccEEEEEE-eCC-EEEEEeCC--CeEEE
Confidence 2222222344477777655542 459999998765 22222222 233444444 434 45555555 47999
Q ss_pred EECCCCceeeeeCC---CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPL---DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~---~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
||+.+++.+..+.. ..+.+..+.++ ++ ++++.+.. ..+..||+
T Consensus 344 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~d---g~v~iwd~ 389 (445)
T 2ovr_B 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN-FVITSSDD---GTVKLWDL 389 (445)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEEC--SS-EEEEEETT---SEEEEEET
T ss_pred EECCCCcEEEEEccCCCCCCCEEEEEEC--CC-EEEEEeCC---CeEEEEEC
Confidence 99988988777765 34556666654 33 44444432 47999999
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.002 Score=68.93 Aligned_cols=227 Identities=10% Similarity=0.128 Sum_probs=126.1
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
.+..++| ||++|+.... + ..|++||+.+++.+..... ......+.|+ ++.|+....+
T Consensus 175 ~v~~l~~--~~~~l~sg~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d------------- 232 (435)
T 1p22_A 175 SVLCLQY--DERVIITGSS-D----STVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKD------------- 232 (435)
T ss_dssp CEEEEEC--CSSEEEEEET-T----SCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETT-------------
T ss_pred cEEEEEE--CCCEEEEEcC-C----CeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCC-------------
Confidence 3555666 8888876543 2 3699999999986432221 1223566775 4455554432
Q ss_pred cCCcEEEEEECCCCCCCCe-eEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 222 HMGQKIYYHVLGTEQDKDI-PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~-~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
..|.++++.++..... ..+. .+...+..+.+ ||++|+.... ...|.+||+.++. ....+.
T Consensus 233 ---g~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~s~~~----dg~i~vwd~~~~~--------~~~~~~ 293 (435)
T 1p22_A 233 ---RSIAVWDMASPTDITLRRVLV--GHRAAVNVVDF--DDKYIVSASG----DRTIKVWNTSTCE--------FVRTLN 293 (435)
T ss_dssp ---SCEEEEECSSSSCCEEEEEEC--CCSSCEEEEEE--ETTEEEEEET----TSEEEEEETTTCC--------EEEEEE
T ss_pred ---CcEEEEeCCCCCCceeeeEec--CCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCcCc--------EEEEEc
Confidence 2688888877643211 1222 22334445555 8888875432 2689999998731 122222
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
........+..+++.++..+. +..|..+|+.++. ....+... ...+..+.+ + +..+++...+ ..|.+
T Consensus 294 -~~~~~v~~~~~~~~~l~~g~~----dg~i~iwd~~~~~---~~~~~~~h-~~~v~~~~~-~-~~~l~sg~~d--g~i~v 360 (435)
T 1p22_A 294 -GHKRGIACLQYRDRLVVSGSS----DNTIRLWDIECGA---CLRVLEGH-EELVRCIRF-D-NKRIVSGAYD--GKIKV 360 (435)
T ss_dssp -CCSSCEEEEEEETTEEEEEET----TSCEEEEETTTCC---EEEEECCC-SSCEEEEEC-C-SSEEEEEETT--SCEEE
T ss_pred -CCCCcEEEEEeCCCEEEEEeC----CCeEEEEECCCCC---EEEEEeCC-cCcEEEEEe-c-CCEEEEEeCC--CcEEE
Confidence 222223334556776665443 3459999998765 22233322 334455544 4 4555566555 47899
Q ss_pred EECCCCc---------eeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGK---------RLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~---------~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
||+.+++ .+..+....+.+..+.+ ++..+ ++.+. -..+..+|+
T Consensus 361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~---Dg~i~iwd~ 412 (435)
T 1p22_A 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSH---DDTILIWDF 412 (435)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCE-EECCS---SSEEEEEC-
T ss_pred EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEE-EEEeC---CCEEEEEEC
Confidence 9986554 44555555555655555 44443 33332 247889998
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00059 Score=70.99 Aligned_cols=203 Identities=9% Similarity=0.065 Sum_probs=114.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+....++++++.++++.... ..|.+||+.+|+.+...........+.|+++. ++... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-~~-------------- 119 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY-GD-------------- 119 (355)
T ss_dssp CCEEEECTTSSEEEEECSST----TEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEE-TT--------------
T ss_pred eEEEEEcCCCCEEEEEECCc----cEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEE-cC--------------
Confidence 45688999999998765332 38999999999865432222234567787764 43332 21
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC-------CC-
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK-------FP- 295 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-------~~- 295 (734)
.|+++++.+.... +..+.. + .....+++ +++++.+. .....|.+||+.++........ .+
T Consensus 120 --~i~i~d~~~~~~~-~~~~~~---~--~~~~~~s~--~~la~~sg--~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~ 187 (355)
T 3vu4_A 120 --VISVFKFGNPWKR-ITDDIR---F--GGVCEFSN--GLLVYSNE--FNLGQIHITKLQSSGSATTQDQGVQQKAILGK 187 (355)
T ss_dssp --EEEEEESSTTCCB-SSCCEE---E--EEEEEEET--TEEEEEES--SCTTCEEEEECCC------------------C
T ss_pred --EEEEEECCCCcee-eEEecc---C--CceEEEEc--cEEEEeCC--CcCcEEEEEECCCCCccccccccccccccCcc
Confidence 6889998876211 111111 1 12356677 77776522 2235799999987320000000 01
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCce-EEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGK-VVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~-l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
...+..+....... |+|||+.|+-.+. +.. |..||+.++.. ...+..+.....+..+.+..++.++++...+
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~----d~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQ----DGTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEET----TCSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeC----CCCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 22233333333343 9999987775444 345 88899987651 2333312123455666666556777777666
Q ss_pred CceeEEEEECCCCc
Q psy4818 374 VRSVMDLHDLNTGK 387 (734)
Q Consensus 374 ~~~~l~~~dl~~g~ 387 (734)
..+.+||+.++.
T Consensus 262 --~~v~iw~~~~~~ 273 (355)
T 3vu4_A 262 --WTLHVFEIFNDQ 273 (355)
T ss_dssp --CEEEEEESSCCS
T ss_pred --CEEEEEEccCCC
Confidence 478999986553
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00043 Score=68.07 Aligned_cols=196 Identities=11% Similarity=0.103 Sum_probs=118.0
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.++.|+||| .||.+... .....|..+++.++.... ....+... +. ..++.+|+.|+....
T Consensus 24 ~Gl~~~~dg-~Lyvstg~-------------~~~s~v~~iD~~tg~v~~--~i~l~~~~-fg--eGi~~~g~~lyv~t~- 83 (266)
T 2iwa_A 24 QGLVYAEND-TLFESTGL-------------YGRSSVRQVALQTGKVEN--IHKMDDSY-FG--EGLTLLNEKLYQVVW- 83 (266)
T ss_dssp EEEEECSTT-EEEEEECS-------------TTTCEEEEEETTTCCEEE--EEECCTTC-CE--EEEEEETTEEEEEET-
T ss_pred ccEEEeCCC-eEEEECCC-------------CCCCEEEEEECCCCCEEE--EEecCCCc-ce--EEEEEeCCEEEEEEe-
Confidence 578999995 55554421 123479999998875321 11222222 33 345556788776543
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED 350 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 350 (734)
..+.++++|.+++. ....+..+...++. +++||+++|+ ++ + ..+|+.+|.++.+. ...+.-..
T Consensus 84 --~~~~v~viD~~t~~--------v~~~i~~g~~~g~g-lt~Dg~~l~v-s~--g-s~~l~viD~~t~~v--~~~I~Vg~ 146 (266)
T 2iwa_A 84 --LKNIGFIYDRRTLS--------NIKNFTHQMKDGWG-LATDGKILYG-SD--G-TSILYEIDPHTFKL--IKKHNVKY 146 (266)
T ss_dssp --TCSEEEEEETTTTE--------EEEEEECCSSSCCE-EEECSSSEEE-EC--S-SSEEEEECTTTCCE--EEEEECEE
T ss_pred --cCCEEEEEECCCCc--------EEEEEECCCCCeEE-EEECCCEEEE-EC--C-CCeEEEEECCCCcE--EEEEEECC
Confidence 23689999998821 11222112122222 7889998885 55 2 35799999987541 12222111
Q ss_pred CCc---eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-C------------ceEEeeccCcccceEEEE
Q psy4818 351 ENR---TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-L------------GQITHISGRRKYNEVFYG 414 (734)
Q Consensus 351 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~------------g~v~~~~~~~d~~~l~~~ 414 (734)
... .+..+.+.+ +.+|+... ....|.++|+++|+.+..|..+ . ....++.+++++++++++
T Consensus 147 ~~~p~~~~nele~~d-g~lyvn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 147 NGHRVIRLNELEYIN-GEVWANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp TTEECCCEEEEEEET-TEEEEEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred CCcccccceeEEEEC-CEEEEecC--CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 111 233444554 67775542 2368999999999988887653 0 234678888999999988
Q ss_pred EecCCCCceEEEEeC
Q psy4818 415 FTSFLQPGTIYHCNI 429 (734)
Q Consensus 415 ~ss~~~P~~~~~~d~ 429 (734)
...+ +.+|.+++
T Consensus 224 gk~~---~~v~~i~l 235 (266)
T 2iwa_A 224 GKLW---PKLFEIKL 235 (266)
T ss_dssp ETTC---SEEEEEEE
T ss_pred CCCC---CeEEEEEE
Confidence 7655 47999988
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0041 Score=63.36 Aligned_cols=218 Identities=11% Similarity=0.096 Sum_probs=125.3
Q ss_pred EEEEEEECCCCCc-cccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 168 NTLHIKDVDTGKD-YPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 168 ~~l~v~dl~~g~~-~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
..|+.+|++++.. ......+. ...++.|.+.+..||++... ..+|++.++.+......++...
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~---------------~~~I~r~~~~g~~~~~~~~~~~ 77 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS---------------EEAIKRTEFNKTESVQNVVVSG 77 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT---------------TTEEEEEETTSSSCCCEEEEEC
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC---------------CCcEEEEEccCCCceEEEEcCC
Confidence 6799999987641 11111111 23578999988888887532 2479999887664322333332
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-ccccceEE-EEEecCCeEEEEeCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI-PGMDHHHE-IIANNGPELIVKTTK 323 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~ 323 (734)
...+ .++++.+.++.|+++.. ....|.++++++. ....+. .....-.. .+.|.+..||+.-..
T Consensus 78 l~~p---~glavd~~~g~ly~~d~---~~~~I~~~~~dG~---------~~~~l~~~~~~~P~giavdp~~g~ly~td~~ 142 (318)
T 3sov_A 78 LLSP---DGLACDWLGEKLYWTDS---ETNRIEVSNLDGS---------LRKVLFWQELDQPRAIALDPSSGFMYWTDWG 142 (318)
T ss_dssp CSCC---CEEEEETTTTEEEEEET---TTTEEEEEETTSC---------SCEEEECSSCSSEEEEEEEGGGTEEEEEECS
T ss_pred CCCc---cEEEEEcCCCeEEEEEC---CCCEEEEEECCCC---------cEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 2222 36788888888887643 2368999999872 112232 22221222 377877888876432
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCC-CCceEEe
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITH 401 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~-~~g~v~~ 401 (734)
...+|+++++++.. .+.++... -....++.+. +++.||++-. ....|+++++ +|...+.+.. ..+...+
T Consensus 143 --~~~~I~r~~~dG~~---~~~~~~~~-l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~-dG~~~~~~~~~~~~~P~g 213 (318)
T 3sov_A 143 --EVPKIERAGMDGSS---RFIIINSE-IYWPNGLTLDYEEQKLYWADA--KLNFIHKSNL-DGTNRQAVVKGSLPHPFA 213 (318)
T ss_dssp --SSCEEEEEETTSCS---CEEEECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEET-TSCSCEEEECSCCSCEEE
T ss_pred --CCCEEEEEEcCCCC---eEEEEECC-CCCccEEEEeccCCEEEEEEC--CCCEEEEEcC-CCCceEEEecCCCCCceE
Confidence 34679999998654 24444332 2233455555 3578887643 3468999999 5654344322 2222233
Q ss_pred eccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 402 ISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 402 ~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++. +++.++++- . .-..++++|.
T Consensus 214 lav--~~~~lywtd--~-~~~~V~~~~~ 236 (318)
T 3sov_A 214 LTL--FEDILYWTD--W-STHSILACNK 236 (318)
T ss_dssp EEE--ETTEEEEEE--T-TTTEEEEEET
T ss_pred EEE--eCCEEEEEe--c-CCCeEEEEEC
Confidence 443 344566552 2 2347888887
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0045 Score=63.11 Aligned_cols=226 Identities=8% Similarity=0.028 Sum_probs=128.8
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC----CCcccccccc-cccC
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT----GKDYPEVLKN-VKFP 191 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~----g~~~~~~~~~-~~~~ 191 (734)
|.+.+..+.....++.. + ....++.|++++++|.|+-... ..|+.+++.+ .......... ....
T Consensus 12 I~~i~~~~~~~~~~~~~--~-----~~p~g~~~d~~~~~ly~~D~~~----~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 12 VRKMTLDRSEYTSLIPN--L-----RNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEETTSCCCEEEECS--C-----SSEEEEEEETTTTEEEEEETTT----TEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCcceEehhcC--C-----CceEEEEEEeCCCEEEEEECCC----CcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 56666544444444331 1 1256899999998887765432 3699999886 2211111111 1236
Q ss_pred eeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecC
Q psy4818 192 SISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNN 271 (734)
Q Consensus 192 ~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 271 (734)
++++.+.++.||++... ..+|.+.++++.. ...+.... ...-.+++.+|++++|+++...
T Consensus 81 glavd~~~~~ly~~d~~---------------~~~I~~~~~~g~~--~~~~~~~~--~~~P~~iavdp~~g~ly~~d~~- 140 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSV---------------LGTVSVADTKGVK--RKTLFREN--GSKPRAIVVDPVHGFMYWTDWG- 140 (316)
T ss_dssp EEEEETTTTEEEEEETT---------------TTEEEEEETTSSS--EEEEEECT--TCCEEEEEEETTTTEEEEEECS-
T ss_pred EEEEeecCCeEEEEECC---------------CCEEEEEeCCCCc--eEEEEECC--CCCcceEEeCCCCCEEEEEccC-
Confidence 78888888888876421 2378888876542 12233221 1133578999999988876432
Q ss_pred CCCceEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC
Q psy4818 272 TQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE 349 (734)
Q Consensus 272 ~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 349 (734)
....|+++++++ .. ...+.. ....-.. .+++++++||+.-. ...+|+++++++.. .+.+...
T Consensus 141 -~~~~I~~~~~dG-~~--------~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~---~~~~~~~ 204 (316)
T 1ijq_A 141 -TPAKIKKGGLNG-VD--------IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN---RKTILED 204 (316)
T ss_dssp -SSCEEEEEETTS-CC--------EEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS---CEEEEEC
T ss_pred -CCCeEEEEcCCC-CC--------eEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc---eEEEeec
Confidence 226899999876 21 122222 1111112 38888999998643 24679999998654 2444432
Q ss_pred C-CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 350 D-ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 350 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
. ......++.+. ++.+|++.. +..+|.+++..+|+.++.+
T Consensus 205 ~~~~~~P~giav~-~~~ly~~d~--~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 205 EKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTTSSEEEEEEE-TTEEEEEET--TTTEEEEEETTTCCCCEEE
T ss_pred CCccCCcEEEEEE-CCEEEEEEC--CCCeEEEEeCCCCcceEEE
Confidence 1 11222345454 478887653 3468999998778754444
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.4e-05 Score=80.23 Aligned_cols=212 Identities=9% Similarity=-0.081 Sum_probs=107.2
Q ss_pred CCcEEEeeEEeCC--------CCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEec
Q psy4818 139 DGTTALKLYAFSD--------NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCD 209 (734)
Q Consensus 139 ~~~~~~~~~~~SP--------DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~ 209 (734)
++...+..++||| ||++||-..+ ..+|++||+.++..+... ........++|+|++..++.+...+
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~-----D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGD-----DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEET-----TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEEC-----CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence 4455688999998 9999985543 358999999877643322 2222335789999997666555422
Q ss_pred CCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe---------------------cCCCCeeEEEEEEe-cCCcEEEEE
Q psy4818 210 INGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE---------------------FPNGRSLGLHSEVT-DCGRYLLVS 267 (734)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~---------------------~~~~~~~~~~~~~S-pDG~~l~~~ 267 (734)
..|.+|++.+++........ ..........+.|+ |||+.|+-.
T Consensus 209 ---------------~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~ 273 (393)
T 4gq1_A 209 ---------------GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM 273 (393)
T ss_dssp ---------------SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE
T ss_pred ---------------CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE
Confidence 26788887765432111000 00011122345665 899998743
Q ss_pred EecCCCCceEEEEeCCCCCCCc-ccCCC----------CceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecC
Q psy4818 268 TSNNTQGSDLHYFDLHSLPDGK-ISGKF----------PLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLN 336 (734)
Q Consensus 268 ~~~~~~~~~i~~~d~~~~~~~~-l~~~~----------~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 336 (734)
. ....+.+||+.++.... +.... ...............+.+..+.+++.+. +.+..|.++|+.
T Consensus 274 s----~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg--s~Dg~V~lwd~~ 347 (393)
T 4gq1_A 274 C----KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH--SQHGLIQLINTY 347 (393)
T ss_dssp C----TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE--TTTTEEEEEETT
T ss_pred e----CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE--CCCCEEEEEECC
Confidence 2 23678899987633211 10000 0000000000000124443333443332 224579999998
Q ss_pred CCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 337 NPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
++.. ...+..+. ..+..+.+..+++.++....++ +.++.+
T Consensus 348 ~~~~--~~~~~~~~--~~V~svafspdG~~LA~as~~G---v~lvrL 387 (393)
T 4gq1_A 348 EKDS--NSIPIQLG--MPIVDFCWHQDGSHLAIATEGS---VLLTRL 387 (393)
T ss_dssp CTTC--CEEEEECS--SCEEEEEECTTSSEEEEEESSE---EEEEEE
T ss_pred CCcE--EEEecCCC--CcEEEEEEcCCCCEEEEEeCCC---eEEEEE
Confidence 7652 23344333 3456666655566666666654 444444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0032 Score=63.84 Aligned_cols=236 Identities=9% Similarity=0.023 Sum_probs=119.4
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..+++|+|||+ | |.++..+ ..|+.+|.+++........ ....++++++||+ |+++.... .
T Consensus 34 pegia~~~~g~-l-yv~d~~~---~~I~~~d~~g~~~~~~~~~-~~p~gia~~~dG~-l~vad~~~-------------~ 93 (306)
T 2p4o_A 34 LENLASAPDGT-I-FVTNHEV---GEIVSITPDGNQQIHATVE-GKVSGLAFTSNGD-LVATGWNA-------------D 93 (306)
T ss_dssp EEEEEECTTSC-E-EEEETTT---TEEEEECTTCCEEEEEECS-SEEEEEEECTTSC-EEEEEECT-------------T
T ss_pred cceEEECCCCC-E-EEEeCCC---CeEEEECCCCceEEEEeCC-CCceeEEEcCCCc-EEEEeccC-------------C
Confidence 46789999998 4 4444332 3589999876532211112 2336789999998 55443211 1
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCccc---CCCCceeee
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKIS---GKFPLKTVI 300 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~l~ 300 (734)
..+|++++..++.. ..+...+. ..+..++...+++ .+++.. . ....||.+|..++.. .+. .........
T Consensus 94 ~~~v~~~d~~~g~~--~~~~~~~~-~~~~~g~~~~~~~-~~~v~d-~--~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~ 165 (306)
T 2p4o_A 94 SIPVVSLVKSDGTV--ETLLTLPD-AIFLNGITPLSDT-QYLTAD-S--YRGAIWLIDVVQPSG-SIWLEHPMLARSNSE 165 (306)
T ss_dssp SCEEEEEECTTSCE--EEEEECTT-CSCEEEEEESSSS-EEEEEE-T--TTTEEEEEETTTTEE-EEEEECGGGSCSSTT
T ss_pred cceEEEEcCCCCeE--EEEEeCCC-ccccCcccccCCC-cEEEEE-C--CCCeEEEEeCCCCcE-eEEEECCcccccccc
Confidence 12577766555432 22333222 2233445555554 444332 1 225899999875210 000 000000000
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCC-CCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN-PCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
........ +++||+.||+.... ..+|+++++++ +.....+.+.... ....+.+..++.+|++.. +...|.
T Consensus 166 ~~~~~png-is~dg~~lyv~d~~---~~~I~~~~~~~~g~~~~~~~~~~~~---~P~gi~vd~dG~l~va~~--~~~~V~ 236 (306)
T 2p4o_A 166 SVFPAANG-LKRFGNFLYVSNTE---KMLLLRIPVDSTDKPGEPEIFVEQT---NIDDFAFDVEGNLYGATH--IYNSVV 236 (306)
T ss_dssp CCSCSEEE-EEEETTEEEEEETT---TTEEEEEEBCTTSCBCCCEEEEESC---CCSSEEEBTTCCEEEECB--TTCCEE
T ss_pred CCCCcCCC-cCcCCCEEEEEeCC---CCEEEEEEeCCCCCCCccEEEeccC---CCCCeEECCCCCEEEEeC--CCCeEE
Confidence 11111112 48999888875432 45799999875 3211122222111 112334444466665543 235799
Q ss_pred EEECCCCceee--eeCCCCceEEeeccC---cccceEEEEEec
Q psy4818 380 LHDLNTGKRLH--SFPLDLGQITHISGR---RKYNEVFYGFTS 417 (734)
Q Consensus 380 ~~dl~~g~~~~--~l~~~~g~v~~~~~~---~d~~~l~~~~ss 417 (734)
+++. +|+... .+..+.....++.+. ++++.|+++.+.
T Consensus 237 ~~~~-~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 237 RIAP-DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EECT-TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EECC-CCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 9998 576532 333332234456665 677888887654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0037 Score=63.69 Aligned_cols=217 Identities=10% Similarity=0.019 Sum_probs=120.0
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCC--CCCeeEEecC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQ--DKDIPVVEFP 246 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~--~~~~~v~~~~ 246 (734)
.|+++|+++++............+++|.++++.||++... ..+|++.++.+.. .....+....
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~---------------~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------------QRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT---------------TTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC---------------CCcEEEEECCCCCCCcccEEEEeCC
Confidence 4899999887643322121223689999998889887532 3478988887621 1112233211
Q ss_pred -CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCC
Q psy4818 247 -NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTK 323 (734)
Q Consensus 247 -~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~ 323 (734)
..+ .++++++.++.|+++.. ....|.++++++. ....++. ....-.. .++|+++.||+....
T Consensus 76 ~~~p---~glavd~~~~~ly~~d~---~~~~I~~~~~~g~---------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 76 IQAP---DGLAVDWIHSNIYWTDS---VLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp CSCC---CEEEEETTTTEEEEEET---TTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred CCCc---CEEEEeecCCeEEEEEC---CCCEEEEEeCCCC---------ceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence 122 46788888888877543 2368999998761 1222332 1111122 377878888876432
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeC-CC--CceE
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP-LD--LGQI 399 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~-~~--~g~v 399 (734)
...+|+++++++.. .+.+.... -....++.+. +++.||++-. ....|+++++ +|...+.+. .. ....
T Consensus 141 --~~~~I~~~~~dG~~---~~~~~~~~-~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~-dg~~~~~~~~~~~~~~~P 211 (316)
T 1ijq_A 141 --TPAKIKKGGLNGVD---IYSLVTEN-IQWPNGITLDLLSGRLYWVDS--KLHSISSIDV-NGGNRKTILEDEKRLAHP 211 (316)
T ss_dssp --SSCEEEEEETTSCC---EEEEECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEET-TSCSCEEEEECTTTTSSE
T ss_pred --CCCeEEEEcCCCCC---eEEEEECC-CCCceEEEEeccCCEEEEEEC--CCCeEEEEec-CCCceEEEeecCCccCCc
Confidence 23679999998654 23333332 2334455555 4577887643 3468999999 465434332 11 1222
Q ss_pred EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 400 THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 400 ~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+++. +++.++++-. .-.+++++|.
T Consensus 212 ~giav--~~~~ly~~d~---~~~~V~~~~~ 236 (316)
T 1ijq_A 212 FSLAV--FEDKVFWTDI---INEAIFSANR 236 (316)
T ss_dssp EEEEE--ETTEEEEEET---TTTEEEEEET
T ss_pred EEEEE--ECCEEEEEEC---CCCeEEEEeC
Confidence 23443 2345655432 1246777776
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.06 E-value=0.004 Score=63.46 Aligned_cols=206 Identities=6% Similarity=-0.004 Sum_probs=124.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccc-ccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..++.|.+.++.|.|+-. .+ ..|+.+++.++.... ....+ ....++++.+.+..||++..
T Consensus 37 ~~~ld~d~~~~~lyw~D~-~~---~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~-------------- 98 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDV-SE---EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS-------------- 98 (318)
T ss_dssp EEEEEEEGGGTEEEEEET-TT---TEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET--------------
T ss_pred cEEEEEEeCCCEEEEEEC-CC---CcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC--------------
Confidence 457889998888876543 32 369999998774221 11111 12357888888888887642
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
...+|.+.++++... ..+.... ...-.++++.|++.+|+++... ....|+++++++ .. ...++.
T Consensus 99 -~~~~I~~~~~dG~~~--~~l~~~~--~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG-~~--------~~~~~~ 162 (318)
T 3sov_A 99 -ETNRIEVSNLDGSLR--KVLFWQE--LDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDG-SS--------RFIIIN 162 (318)
T ss_dssp -TTTEEEEEETTSCSC--EEEECSS--CSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTS-CS--------CEEEEC
T ss_pred -CCCEEEEEECCCCcE--EEEEeCC--CCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCC-CC--------eEEEEE
Confidence 123788888876432 2233211 1133578999998888876432 236899999986 21 122222
Q ss_pred -cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEE
Q psy4818 302 -GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMD 379 (734)
Q Consensus 302 -~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 379 (734)
+...-.. .+++++++||+.-. ...+|+++++++.. .+.++... .....++.+. ++.+|++. -+...|+
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~---~~~~~~~~-~~~P~glav~-~~~lywtd--~~~~~V~ 232 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTN---RQAVVKGS-LPHPFALTLF-EDILYWTD--WSTHSIL 232 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS---CEEEECSC-CSCEEEEEEE-TTEEEEEE--TTTTEEE
T ss_pred CCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCc---eEEEecCC-CCCceEEEEe-CCEEEEEe--cCCCeEE
Confidence 1111122 38888999998643 35679999998754 24444422 2223344444 47888873 3446899
Q ss_pred EEECCCCceeeeeC
Q psy4818 380 LHDLNTGKRLHSFP 393 (734)
Q Consensus 380 ~~dl~~g~~~~~l~ 393 (734)
+++..+|+..+.|.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 99987787655543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0038 Score=64.62 Aligned_cols=215 Identities=10% Similarity=0.023 Sum_probs=121.6
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec-CC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF-PN 247 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~-~~ 247 (734)
.|+.+++++..............+++|.++++.||++... ..+|+++++++...+ .+... ..
T Consensus 54 ~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~---------------~~~I~r~~~~g~~~~--~~~~~~~~ 116 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT---------------LDRILRANLNGSNVE--EVVSTGLE 116 (349)
T ss_dssp CEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT---------------TTEEEEEETTSCSCE--EEECSSCS
T ss_pred ceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc---------------CCceEEEecCCCCce--EEEeCCCC
Confidence 4888888776532221111223688999988889887532 237999998765422 22221 11
Q ss_pred CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCCCC
Q psy4818 248 GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTKNA 325 (734)
Q Consensus 248 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~ 325 (734)
.+ .++++.+.++.|+++.. ....|+++++++. . ...++. +...-.. .++|+++.||+.-...
T Consensus 117 ~p---~glavd~~~g~ly~~d~---~~~~I~~~~~dG~-~--------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~- 180 (349)
T 3v64_C 117 SP---GGLAVDWVHDKLYWTDS---GTSRIEVANLDGA-H--------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN- 180 (349)
T ss_dssp CC---CEEEEETTTTEEEEEET---TTTEEEEEETTSC-S--------CEEEECTTCSCEEEEEEETTTTEEEEEECSS-
T ss_pred Cc---cEEEEecCCCeEEEEcC---CCCeEEEEcCCCC-c--------eEEEEeCCCCCcceEEEecCcCeEEEeccCC-
Confidence 22 46788888888887643 2368999999872 1 122222 1121122 3778788888764422
Q ss_pred CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeee-CCCCceEEeec
Q psy4818 326 PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF-PLDLGQITHIS 403 (734)
Q Consensus 326 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l-~~~~g~v~~~~ 403 (734)
..+|+++++++.. .+.++... -....++.+. +++.||++-. +...|+++++ +|...+.+ ........+++
T Consensus 181 -~~~I~r~~~dG~~---~~~~~~~~-~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~-dG~~~~~~~~~~~~~P~gia 252 (349)
T 3v64_C 181 -TPRIEASSMDGSG---RRIIADTH-LFWPNGLTIDYAGRRMYWVDA--KHHVIERANL-DGSHRKAVISQGLPHPFAIT 252 (349)
T ss_dssp -SCEEEEEETTSCS---CEESCCSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEET-TSCSCEEEECSSCSSEEEEE
T ss_pred -CCEEEEEeCCCCC---cEEEEECC-CCCcceEEEeCCCCEEEEEEC--CCCEEEEEeC-CCCceEEEEeCCCCCceEEE
Confidence 3679999998754 23343332 2334455555 4578887643 3468999998 56543333 22222223344
Q ss_pred cCcccceEEEEEecCCCCceEEEEeC
Q psy4818 404 GRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 404 ~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. +++.++++-.. -..|+++|.
T Consensus 253 v--~~~~ly~td~~---~~~V~~~~~ 273 (349)
T 3v64_C 253 V--FEDSLYWTDWH---TKSINSANK 273 (349)
T ss_dssp E--ETTEEEEEETT---TTEEEEEET
T ss_pred E--ECCEEEEecCC---CCeEEEEEc
Confidence 3 23455544221 235677764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0024 Score=67.21 Aligned_cols=215 Identities=9% Similarity=0.018 Sum_probs=122.5
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec-CC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF-PN 247 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~-~~ 247 (734)
.|+.+++.++.............+++|.+++..||++... ..+|+++++++...+ .+... ..
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~---------------~~~I~r~~~~g~~~~--~~~~~~~~ 159 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT---------------LDRILRANLNGSNVE--EVVSTGLE 159 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT---------------TTEEEEEETTSCCEE--EEECSSCS
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC---------------CCcEEEEecCCCCcE--EEEeCCCC
Confidence 5888898877643222222233689999988889887532 237999988765321 22221 11
Q ss_pred CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCCCC
Q psy4818 248 GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTKNA 325 (734)
Q Consensus 248 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~ 325 (734)
.+ .++++++.++.|+++... ...|+++++++. ....++. +...-.. .++|++..||+.-..
T Consensus 160 ~p---~glavd~~~g~lY~~d~~---~~~I~~~~~dg~---------~~~~l~~~~l~~P~giavdp~~g~ly~td~~-- 222 (386)
T 3v65_B 160 SP---GGLAVDWVHDKLYWTDSG---TSRIEVANLDGA---------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-- 222 (386)
T ss_dssp CC---CCEEEETTTTEEEEEETT---TTEEEECBTTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEECS--
T ss_pred Cc---cEEEEEeCCCeEEEEcCC---CCeEEEEeCCCC---------ceEEeecCCCCCCcEEEEEcCCCeEEEeccC--
Confidence 22 367888888888876432 358999998762 1122222 1121122 377888888876432
Q ss_pred CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeee-CCCCceEEeec
Q psy4818 326 PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF-PLDLGQITHIS 403 (734)
Q Consensus 326 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l-~~~~g~v~~~~ 403 (734)
...+|+++++++.. .+.++... -....++.+. +++.||++-. ....|+++++ +|...+.+ ....+...+++
T Consensus 223 ~~~~I~r~~~dG~~---~~~~~~~~-~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~-dG~~~~~~~~~~~~~P~gia 295 (386)
T 3v65_B 223 NTPRIEASSMDGSG---RRIIADTH-LFWPNGLTIDYAGRRMYWVDA--KHHVIERANL-DGSHRKAVISQGLPHPFAIT 295 (386)
T ss_dssp SSCEEEEEETTSCS---CEEEECSS-CSCEEEEEEEGGGTEEEEEET--TTTEEEEECT-TSCSCEEEECSSCSSEEEEE
T ss_pred CCCEEEEEeCCCCC---cEEEEECC-CCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeC-CCCeeEEEEECCCCCceEEE
Confidence 23679999998754 24444333 2233455554 4578887743 3468999998 55543333 22222233444
Q ss_pred cCcccceEEEEEecCCCCceEEEEeC
Q psy4818 404 GRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 404 ~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ +++.++++-. .-..|+++|.
T Consensus 296 v--~~~~ly~td~---~~~~V~~~~~ 316 (386)
T 3v65_B 296 V--FEDSLYWTDW---HTKSINSANK 316 (386)
T ss_dssp E--ETTEEEEEET---TTTEEEEEET
T ss_pred E--ECCEEEEeeC---CCCeEEEEEC
Confidence 4 3345555422 1246777774
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0091 Score=63.00 Aligned_cols=228 Identities=7% Similarity=0.025 Sum_probs=130.4
Q ss_pred EEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC----cccccccc-ccc
Q psy4818 116 ILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK----DYPEVLKN-VKF 190 (734)
Q Consensus 116 ~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~----~~~~~~~~-~~~ 190 (734)
.|.+.+..+.....++.. + ....++.|++.++.|.|+-... ..|+.+++.++. ........ ...
T Consensus 93 ~I~~i~l~~~~~~~~~~~--~-----~~~~~l~~d~~~~~lywsD~~~----~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPN--L-----RNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEECTTSCSCEEEECS--C-----SCEEEEEEETTTTEEEEEETTT----TEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEEccCCcceeEeccc--c-----CcceEEeeeeccCceEEEecCC----CeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 366666555544555431 1 2256889999888887764333 368888887632 11111111 122
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.+++..+.++.||++.. ...+|.+.++++... ..+.... ...-.+++..|.+.+|+++...
T Consensus 162 ~glavD~~~~~lY~~d~---------------~~~~I~~~~~~g~~~--~~l~~~~--~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDS---------------VLGTVSVADTKGVKR--KTLFREN--GSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp EEEEEETTTTEEEEEET---------------TTTEEEEECTTTCSE--EEEEECS--SCCEEEEEEETTTTEEEEEECS
T ss_pred ccEEEEecCCceEEEEC---------------CCCeEEEEeCCCCce--EEEEeCC--CCCcceEEEecccCeEEEEeCC
Confidence 46788777778877642 123788888875432 2233221 1123578999999998876532
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeecc-ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG-MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 348 (734)
....|+++++++. ....++.. ...-.. .+++++++||+.-. ...+|.++++++.. .+.++.
T Consensus 223 --~~~~I~~~~~dG~---------~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~---~~~~~~ 285 (400)
T 3p5b_L 223 --TPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN---RKTILE 285 (400)
T ss_dssp --SSCCEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCC---CEEEEE
T ss_pred --CCCEEEEEeCCCC---------ccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCc---cEEEEe
Confidence 2358999999872 12223221 111112 38888899998633 34679999998754 344444
Q ss_pred CCC-CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 349 EDE-NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 349 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
... .....++.+. ++.+|++.. +...|++++..+|+.++.|.
T Consensus 286 ~~~~l~~P~gl~v~-~~~lywtd~--~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 286 DEKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp CSSTTSSEEEEEEE-TTEEEEEES--SSCSEEEEESSSCCCCEEEE
T ss_pred CCCCCCCCEEEEEe-CCEEEEecC--CCCeEEEEEcCCCCceEEEe
Confidence 321 1122344444 478887763 33678999876887655554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00097 Score=66.59 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=116.5
Q ss_pred ceEEEEEEECCCCCcccccc-cc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEE
Q psy4818 166 DWNTLHIKDVDTGKDYPEVL-KN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV 243 (734)
Q Consensus 166 ~~~~l~v~dl~~g~~~~~~~-~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~ 243 (734)
....|+++|.++|+.+.... .. .....+.++|||+.|+ +.+ ..|+.++. ++. .+--+
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~----------------~~V~~~d~-~G~--~~W~~ 71 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYS----------------KGAKMITR-DGR--ELWNI 71 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECB----------------SEEEEECT-TSC--EEEEE
T ss_pred CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCC----------------CCEEEECC-CCC--EEEEE
Confidence 33679999999998654322 21 1236788999998555 321 14666665 332 11122
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-c----c-cceEEEEEecCCeE
Q psy4818 244 EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-G----M-DHHHEIIANNGPEL 317 (734)
Q Consensus 244 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~----~-~~~~~~~s~dg~~l 317 (734)
..+. .....++.+++||+.++.... ....++.++.++ + .-+..-.. . . ......+.++|+.+
T Consensus 72 ~~~~-~~~~~~~~~~~dG~~lv~~~~---~~~~v~~vd~~G-k-------~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 72 AAPA-GCEMQTARILPDGNALVAWCG---HPSTILEVNMKG-E-------VLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp ECCT-TCEEEEEEECTTSCEEEEEES---TTEEEEEECTTS-C-------EEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred cCCC-CccccccEECCCCCEEEEecC---CCCEEEEEeCCC-C-------EEEEEeccCCCCcccccccCceECCCCCEE
Confidence 2211 123456789999999875432 135677777644 1 00111000 0 0 00111256788765
Q ss_pred EEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC--
Q psy4818 318 IVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-- 395 (734)
Q Consensus 318 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-- 395 (734)
+..+ .+.+|+.+|.+ ++ ..|+.-.+ ..........+ +.+++....+ .+|+.+|..+|+.+.++...
T Consensus 140 v~~~----~~~~v~~~d~~-G~-~~w~~~~~---~~~~~~~~~~~-g~~~v~~~~~--~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 140 VPLF----ATSEVREIAPN-GQ-LLNSVKLS---GTPFSSAFLDN-GDCLVACGDA--HCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp EEET----TTTEEEEECTT-SC-EEEEEECS---SCCCEEEECTT-SCEEEECBTT--SEEEEECTTTCCEEEEEEGGGS
T ss_pred EEec----CCCEEEEECCC-CC-EEEEEECC---CCccceeEcCC-CCEEEEeCCC--CeEEEEeCcCCcEEEEecCCCC
Confidence 5332 24579999987 43 12332221 12223333333 5666554433 47999999889987666421
Q ss_pred ----CceEEeeccCcccceEEEEEecCC------CCceEEEEeC
Q psy4818 396 ----LGQITHISGRRKYNEVFYGFTSFL------QPGTIYHCNI 429 (734)
Q Consensus 396 ----~g~v~~~~~~~d~~~l~~~~ss~~------~P~~~~~~d~ 429 (734)
...+.++...+++..++..+.+.. ...+++.+|.
T Consensus 208 ~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 208 EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence 112445555667765555543432 3557888876
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=83.78 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=64.7
Q ss_pred CCCcEEEEecCCCCCc------CCccccH---HHHHHHHhcCeEEEEEecccCCCCCchhhhccc---------cccC--
Q psy4818 486 RRNPVIIYGYGGYGVS------VLPTFSI---SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR---------LLKK-- 545 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~------~~~~~~~---~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~---------~~~~-- 545 (734)
+..|.||++||..+.. ....|.. .+...|.++||.|+++|+||. |........ ...+
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~---G~S~~~~~~l~~~i~~g~g~sg~~ 126 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSAL---ASNHERAVELYYYLKGGRVDYGAA 126 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSS---SCHHHHHHHHHHHHHCEEEECCHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCC---CCCccchHHhhhhhhhcccccccc
Confidence 4556788999986642 1234431 245677777999999999994 433321100 0000
Q ss_pred -------CCchhHHHHHHHHHHHcCCCC-CCcEEEEEcChHHHHHHHHHhc--------------------------CCC
Q psy4818 546 -------QNCFDDFQAAAEYMINKKYTK-PKYITIMGGSNGGLLVGACLNQ--------------------------RPE 591 (734)
Q Consensus 546 -------~~~~~D~~~~~~~l~~~~~~d-~~ri~i~G~S~GG~~~~~~~~~--------------------------~p~ 591 (734)
..-.+|+.+. ++. .. ..++.|+|||+||+++..++.. +|+
T Consensus 127 ~~~~~~~~~~a~dl~~l----l~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~ 200 (431)
T 2hih_A 127 HSEKYGHERYGKTYEGV----LKD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDN 200 (431)
T ss_dssp HHHHHTCCSEEEEECCS----CTT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCS
T ss_pred ccccCCHHHHHHHHHHH----HHH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCccc
Confidence 0000111111 111 12 3689999999999999998765 688
Q ss_pred ceeEEEEcCC
Q psy4818 592 LYGAALILVG 601 (734)
Q Consensus 592 ~~~a~v~~~~ 601 (734)
.++.+|+.++
T Consensus 201 ~V~slv~i~t 210 (431)
T 2hih_A 201 MVTSITTIAT 210 (431)
T ss_dssp CEEEEEEESC
T ss_pred ceeEEEEECC
Confidence 8898888765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0014 Score=64.34 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=108.2
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++.++||| +|..+....|. ..|.++|+++|+.+....-+....+...+++|+.||.... .
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~~~--s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~---------------~ 84 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLYGR--SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW---------------L 84 (266)
T ss_dssp EEEEEECSTT-EEEEEECSTTT--CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET---------------T
T ss_pred cccEEEeCCC-eEEEECCCCCC--CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe---------------c
Confidence 3578899996 44444322222 5899999999997553221122233455667888777653 2
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
...+++++..+... +..+..+ .+ .+...++||++|+++. + .+.|+++|.++.. ....+.-+.
T Consensus 85 ~~~v~viD~~t~~v--~~~i~~g-~~---~g~glt~Dg~~l~vs~--g--s~~l~viD~~t~~--------v~~~I~Vg~ 146 (266)
T 2iwa_A 85 KNIGFIYDRRTLSN--IKNFTHQ-MK---DGWGLATDGKILYGSD--G--TSILYEIDPHTFK--------LIKKHNVKY 146 (266)
T ss_dssp CSEEEEEETTTTEE--EEEEECC-SS---SCCEEEECSSSEEEEC--S--SSEEEEECTTTCC--------EEEEEECEE
T ss_pred CCEEEEEECCCCcE--EEEEECC-CC---CeEEEEECCCEEEEEC--C--CCeEEEEECCCCc--------EEEEEEECC
Confidence 34788888876532 1122211 01 1245788999988642 2 3699999998821 112221111
Q ss_pred c--c---eEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC------------CCCceeEEEEEeeC-C
Q psy4818 304 D--H---HHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE------------DENRTLDVVAAVAN-N 364 (734)
Q Consensus 304 ~--~---~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~-~ 364 (734)
. . .... |. +| ++|..... ...|.++|.++++ +...+.- ....+..++.+..+ +
T Consensus 147 ~~~p~~~~nele~~-dg-~lyvn~~~---~~~V~vID~~tg~---V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NG-EVWANIWQ---TDCIARISAKDGT---LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp TTEECCCEEEEEEE-TT-EEEEEETT---SSEEEEEETTTCC---EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred CCcccccceeEEEE-CC-EEEEecCC---CCeEEEEECCCCc---EEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 1 0 1111 44 54 67644322 3469999998876 2322221 11235567766643 4
Q ss_pred EEEEEEEeCCceeEEEEECC
Q psy4818 365 KLIVHYIQNVRSVMDLHDLN 384 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~ 384 (734)
+++++.. ..+.|+.+++.
T Consensus 219 ~lfVTgk--~~~~v~~i~l~ 236 (266)
T 2iwa_A 219 RIFVTGK--LWPKLFEIKLH 236 (266)
T ss_dssp EEEEEET--TCSEEEEEEEE
T ss_pred EEEEECC--CCCeEEEEEEe
Confidence 5555542 23678888874
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.99 E-value=7.1e-05 Score=76.63 Aligned_cols=209 Identities=10% Similarity=0.024 Sum_probs=107.8
Q ss_pred cEEEeeEEeCC--CCcEEEEEEeCCCCceEEEEEEECCCCCcccc-c--ccccccCeeEEEcC--CcEEEEEEEecCCCC
Q psy4818 141 TTALKLYAFSD--NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-V--LKNVKFPSISWTHD--HKGFFYNQYCDINGT 213 (734)
Q Consensus 141 ~~~~~~~~~SP--DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~--~~~~~~~~~~wSpD--g~~l~y~~~~~~~~~ 213 (734)
...+..++||| +|++||-... . .+|++||+.+++.... . .....+..++|+|| |+.|+-...+.
T Consensus 57 ~~~V~~v~~~~~~~~~~l~s~s~-D----~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~---- 127 (316)
T 3bg1_A 57 EGPVWQVAWAHPMYGNILASCSY-D----RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG---- 127 (316)
T ss_dssp SSCEEEEEECCGGGSSCEEEEET-T----SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS----
T ss_pred CccEEEEEeCCCCCCCEEEEEEC-C----CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC----
Confidence 34578899997 4888775442 2 3699999998752211 1 12223468999998 66565544322
Q ss_pred CCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCC-----------------cEEEEEEecCCCCce
Q psy4818 214 ADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG-----------------RYLLVSTSNNTQGSD 276 (734)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG-----------------~~l~~~~~~~~~~~~ 276 (734)
.|+++++.+..... .......+......+.|+|++ ++|+ .+.....
T Consensus 128 ------------~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----sgs~D~~ 190 (316)
T 3bg1_A 128 ------------AISLLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA----SGGCDNL 190 (316)
T ss_dssp ------------CEEEEEECSSSCEE-ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE----CCBTTSB
T ss_pred ------------CEEEEecCCCCCcc-eeeeeccccCCcceEEEccccCCccccccccccCccccceEE----EecCCCe
Confidence 57777766542100 001111122233467888873 4554 2223357
Q ss_pred EEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecC----CeEEEEeCCCCCCceEEEEecCCCCCCCc-eEeecCC
Q psy4818 277 LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNG----PELIVKTTKNAPKGKVVTINLNNPCEKNW-KTLIPED 350 (734)
Q Consensus 277 i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~ 350 (734)
|.+||+.++.. . .....+..+....... |+|++ +.|+-.+. +..|..|++++.....+ ..++...
T Consensus 191 v~lWd~~~~~~--~---~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~ 261 (316)
T 3bg1_A 191 IKLWKEEEDGQ--W---KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKF 261 (316)
T ss_dssp CCEEEECTTSC--E---EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred EEEEEeCCCCc--c---ceeeecccCCCceEEEEecCCCCCCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcC
Confidence 88888865110 0 0111122222223333 88886 44443332 34688888875321111 1122222
Q ss_pred CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECC-CCc
Q psy4818 351 ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLN-TGK 387 (734)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~-~g~ 387 (734)
...+..+.+..++.++++...++ .+.+|+.. .|+
T Consensus 262 -~~~v~~v~~sp~g~~las~~~D~--~v~lw~~~~~g~ 296 (316)
T 3bg1_A 262 -NDVVWHVSWSITANILAVSGGDN--KVTLWKESVDGQ 296 (316)
T ss_dssp -SSCEEEEEECTTTCCEEEEESSS--CEEEEEECTTSC
T ss_pred -CCcEEEEEEcCCCCEEEEEcCCC--eEEEEEECCCCc
Confidence 23344555555466666776664 56677653 343
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0021 Score=65.83 Aligned_cols=187 Identities=9% Similarity=0.002 Sum_probs=104.2
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC--CCceEEEEEEECCCCCcccccccccccCeeE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS--GSDWNTLHIKDVDTGKDYPEVLKNVKFPSIS 194 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~--g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~ 194 (734)
|++.+..++..+.+.+.... .....+..+.++|||+. .++.... ......||.++ +|+............+++
T Consensus 111 l~~~d~~~g~~~~~~~~~~~--~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESD--LPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSIC 185 (326)
T ss_dssp EEEEETTTCCEEEEECSSTT--CTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEE
T ss_pred EEEEECCCCcEEEEeeCCCC--CCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeE
Confidence 77777666666666553211 11345788999999984 4443211 01235799998 465332211111225789
Q ss_pred EEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECC--CC-CCCC-eeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 195 WTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLG--TE-QDKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 195 wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--t~-~~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
|+|||+.||++... ...|++++++ ++ .... ..+...........++.+++||+. ++...
T Consensus 186 ~s~dg~~lyv~~~~---------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l-wva~~- 248 (326)
T 2ghs_A 186 FSPDGTTGYFVDTK---------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-WNARW- 248 (326)
T ss_dssp ECTTSCEEEEEETT---------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-EEEEE-
T ss_pred EcCCCCEEEEEECC---------------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE-EEEEe-
Confidence 99999999886531 2378999875 33 2211 222222212234457889999974 33322
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEE-ecCCeEEEEeCCCCC----------CceEEEEecC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIA-NNGPELIVKTTKNAP----------KGKVVTINLN 336 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~----------~~~l~~~d~~ 336 (734)
....|++++.++ . ....+......... .|+ +|++.||+.+...+. .+.||++++.
T Consensus 249 --~~~~v~~~d~~g-~--------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p~~g~~~~~~~~ 315 (326)
T 2ghs_A 249 --GEGAVDRYDTDG-N--------HIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIE 315 (326)
T ss_dssp --TTTEEEEECTTC-C--------EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSSC
T ss_pred --CCCEEEEECCCC-C--------EEEEEECCCCCcEEEEEecCCCCEEEEEecCCCCChhHhccCCCCceEEEEeCC
Confidence 125799998854 1 11112111111222 377 888889988776531 2568887753
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.98 E-value=3.4e-05 Score=77.67 Aligned_cols=95 Identities=11% Similarity=-0.059 Sum_probs=60.2
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..|.||++||..+... .|.. +...| .+.|+.+|+++.. ...+++++.+.+..++..-.
T Consensus 22 ~~~~~l~~~hg~~~~~~--~~~~-~~~~L---~~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~~- 80 (283)
T 3tjm_A 22 SSERPLFLVHPIEGSTT--VFHS-LASRL---SIPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQVQ- 80 (283)
T ss_dssp SSSCCEEEECCTTCCSG--GGHH-HHHHC---SSCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTTC-
T ss_pred CCCCeEEEECCCCCCHH--HHHH-HHHhc---CceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHhC-
Confidence 44577889999866543 3332 33444 3889999986411 12345565554444443321
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcC---CCcee---EEEEcCC
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQR---PELYG---AALILVG 601 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~---p~~~~---a~v~~~~ 601 (734)
..+++.++|||+||.++..++.+. |+.++ .+|+..+
T Consensus 81 ~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~ 122 (283)
T 3tjm_A 81 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDG 122 (283)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcC
Confidence 225799999999999999988754 77776 6666554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0032 Score=62.89 Aligned_cols=238 Identities=9% Similarity=0.036 Sum_probs=123.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-----c-cccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-----N-VKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-----~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
....+++++|||+. .+ .+.. ...|+++|.++......... . .....+++++.+..|+.+...
T Consensus 30 ~~p~~v~~~~~g~l-~v-~~~~---~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~------- 97 (286)
T 1q7f_A 30 TEPSGVAVNAQNDI-IV-ADTN---NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS------- 97 (286)
T ss_dssp SCEEEEEECTTCCE-EE-EEGG---GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-------
T ss_pred CCCceEEECCCCCE-EE-EECC---CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-------
Confidence 34678899999983 33 3222 13699999874322111110 0 122467785333456655421
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
....|++++.... .+..+... ......+++++|||+ |++... ....|++++.++ . .
T Consensus 98 -------~~~~i~~~d~~g~---~~~~~~~~-~~~~~~~i~~~~~g~-l~v~~~---~~~~i~~~~~~g-~--------~ 153 (286)
T 1q7f_A 98 -------PTHQIQIYNQYGQ---FVRKFGAT-ILQHPRGVTVDNKGR-IIVVEC---KVMRVIIFDQNG-N--------V 153 (286)
T ss_dssp -------GGCEEEEECTTSC---EEEEECTT-TCSCEEEEEECTTSC-EEEEET---TTTEEEEECTTS-C--------E
T ss_pred -------CCCEEEEECCCCc---EEEEecCc-cCCCceEEEEeCCCC-EEEEEC---CCCEEEEEcCCC-C--------E
Confidence 1236777763321 11222211 112346789999998 444322 236899998755 1 1
Q ss_pred ceeee--ccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 296 LKTVI--PGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 296 ~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
...+. ........ .++++|+ +|+.... ...|++++.++.. ...+...........+.+..++.+++....
T Consensus 154 ~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~---~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 154 LHKFGCSKHLEFPNGVVVNDKQE-IFISDNR---AHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTTCSSEEEEEECSSSE-EEEEEGG---GTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred EEEeCCCCccCCcEEEEECCCCC-EEEEECC---CCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence 11111 11111222 2777765 6654332 3569999986532 223322211123445555555677766543
Q ss_pred CCceeEEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ ...|.+|+. +|+.++.+... .....++.+++++ .++++ +. -..+.+++.
T Consensus 227 ~-~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~---~~~v~v~~~ 278 (286)
T 1q7f_A 227 N-NFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG-SVVLA-SK---DYRLYIYRY 278 (286)
T ss_dssp S-SCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT-EEEEE-ET---TTEEEEEEC
T ss_pred C-CEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC-cEEEE-CC---CCeEEEEEc
Confidence 3 137999997 67766666433 2234467777776 46666 32 247777776
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0015 Score=63.48 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=115.5
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.++.|+ |+ .||.+.-.. ....|.++++.++...... ..+. . . ++...+++|+.|+.....
T Consensus 46 qGL~~~-~~-~LyestG~~-------------g~S~v~~vD~~Tgkv~~~~--~l~~-~-~-FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTGLN-------------GRSSIRKVDIESGKTLQQI--ELGK-R-Y-FGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEE-TT-EEEEEEEET-------------TEEEEEEECTTTCCEEEEE--ECCT-T-C-CEEEEEEETTEEEEEESS
T ss_pred ceEEEE-CC-EEEEECCCC-------------CCceEEEEECCCCcEEEEE--ecCC-c-c-ceeEEEEeCCEEEEEEee
Confidence 477887 65 666655321 2347888898887532221 2221 1 2 234566778888766432
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec--
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP-- 348 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-- 348 (734)
.+.++++|.+++. ...-+.-...++. +++||++||. ++ + ..+|+.+|.++.+. ...+.-
T Consensus 106 ---~~~v~v~D~~t~~---------~~~ti~~~~eG~g-lt~dg~~L~~-Sd--G-s~~i~~iDp~T~~v--~~~I~V~~ 166 (262)
T 3nol_A 106 ---NGLGFVWNIRNLR---------QVRSFNYDGEGWG-LTHNDQYLIM-SD--G-TPVLRFLDPESLTP--VRTITVTA 166 (262)
T ss_dssp ---SSEEEEEETTTCC---------EEEEEECSSCCCC-EEECSSCEEE-CC--S-SSEEEEECTTTCSE--EEEEECEE
T ss_pred ---CCEEEEEECccCc---------EEEEEECCCCceE-EecCCCEEEE-EC--C-CCeEEEEcCCCCeE--EEEEEecc
Confidence 3789999998831 1111111112222 6788887775 44 2 35699999987542 122211
Q ss_pred CC-CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC------------CceEEeeccCcccceEEEEE
Q psy4818 349 ED-ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD------------LGQITHISGRRKYNEVFYGF 415 (734)
Q Consensus 349 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~------------~g~v~~~~~~~d~~~l~~~~ 415 (734)
.. +-..+..+.+.+ +.+++..-. ...|.++|+++|+.+..|... .....+++.++++++++++.
T Consensus 167 ~g~~~~~lNELe~~~-G~lyan~w~--~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 167 HGEELPELNELEWVD-GEIFANVWQ--TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TTEECCCEEEEEEET-TEEEEEETT--SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCccccccceeEEEC-CEEEEEEcc--CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 11 112233344554 777755432 358999999999988777642 12346788889889999887
Q ss_pred ecCCCCceEEEEeC
Q psy4818 416 TSFLQPGTIYHCNI 429 (734)
Q Consensus 416 ss~~~P~~~~~~d~ 429 (734)
--+ +.+|.+.+
T Consensus 244 K~W---p~~~ev~~ 254 (262)
T 3nol_A 244 KLW---PKVFEITL 254 (262)
T ss_dssp TTC---SEEEEEEE
T ss_pred CCC---CceEEEEE
Confidence 766 46787766
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00043 Score=75.25 Aligned_cols=217 Identities=11% Similarity=0.039 Sum_probs=113.9
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEe-C-CCCcEEEEEEeC------C------
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAF-S-DNGKHFAYCLSK------S------ 163 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~-S-PDG~~la~~~~~------~------ 163 (734)
+||.++|- ++... ..+.|.+...-+-..++... .+ ....++++ + |||+++...... .
T Consensus 99 ~DG~~lfV--nd~~~--~rVavIdl~t~~~~~ii~ip---~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 99 YDGRFLFM--NDKAN--TRVARVRCDVMKCDAILEIP---NA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEE--EETTT--TEEEEEETTTTEEEEEEECS---SC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cCCCEEEE--EcCCC--CEEEEEECCCceEeeEEeCC---CC--CCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 36666665 22212 44666665443323333321 11 11446666 6 999998554311 1
Q ss_pred -CCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCC-------------------------CC
Q psy4818 164 -GSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTA-------------------------DG 216 (734)
Q Consensus 164 -g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~-------------------------~~ 216 (734)
......+-++|.++.+.+.. ..++ .......||||+++|.+..+...+.. +|
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 12346899999999875432 2223 34678899999999888765432210 01
Q ss_pred CcccccCCcEEEEEECCCCCCCC-eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCC---CCcccC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP---DGKISG 292 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~---~~~l~~ 292 (734)
.. .....|-+++..+..... +.....+..+ .++.+|||||++++.. ...+.|.++|+++.. ..+|..
T Consensus 249 k~---~~i~~V~VID~~~~~~~~~~~~Ipvg~~P---hGv~~sPDGk~v~V~~---~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 249 DY---QELNGVKVVDGRKEASSLFTRYIPIANNP---HGCNMAPDKKHLCVAG---KLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp CS---EEETTEEEEECSGGGCCSSEEEEEEESSC---CCEEECTTSSEEEEEC---TTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred Ce---eEECcEEEEeCcccCCceeEEEEecCCCc---eEEEEcCCCCEEEEeC---CCCCeEEEEECcccccccccccCc
Confidence 00 011236666666521111 1112222223 3689999999998743 233689999998621 011111
Q ss_pred CCCce-eeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 293 KFPLK-TVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 293 ~~~~~-~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
..... .+..+.......|++|| .+|..... ..+|..|++++
T Consensus 320 ~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l---dsqV~kwdi~~ 361 (595)
T 1fwx_A 320 RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL---DSQVVKWNIED 361 (595)
T ss_dssp GGGEEECCBCCSCEEEEEECTTS-EEEEEETT---TTEEEEEEHHH
T ss_pred ccceEEEcCCCCCcceEEECCCC-eEEEEEec---CCcEEEEEhhH
Confidence 11111 11122222333499999 66654443 35688899865
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4.4e-05 Score=79.57 Aligned_cols=88 Identities=14% Similarity=0.028 Sum_probs=52.6
Q ss_pred CCcEEEEecCCCCCcCC-----ccccH---HHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHH
Q psy4818 487 RNPVIIYGYGGYGVSVL-----PTFSI---SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~-----~~~~~---~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 558 (734)
..|.||++||..+.... ..|.. .+.+.|+++||.|+++|+||.| ..+..+ .++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G---~s~~~a----------~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLS---SNWDRA----------CEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSB---CHHHHH----------HHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCC---CccccH----------HHHHHHHHh
Confidence 34568889998665321 22321 2346677789999999999943 322211 111111110
Q ss_pred --------HHH-----------cC----CCCCCcEEEEEcChHHHHHHHHHh
Q psy4818 559 --------MIN-----------KK----YTKPKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 559 --------l~~-----------~~----~~d~~ri~i~G~S~GG~~~~~~~~ 587 (734)
+.+ .. ....+++.++||||||.++..++.
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~ 123 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVS 123 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHH
Confidence 110 00 123468999999999999999986
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00049 Score=69.90 Aligned_cols=157 Identities=12% Similarity=0.025 Sum_probs=85.4
Q ss_pred eEEeCCCCcEEEEEEeCCC-------------CceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCC
Q psy4818 146 LYAFSDNGKHFAYCLSKSG-------------SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDING 212 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g-------------~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~ 212 (734)
.+.++|||+. .|+-..-| .....|+.+|.++|+..... ......+++|||||+.||++.....
T Consensus 135 ~i~~d~dG~l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~-- 210 (305)
T 3dr2_A 135 DLIVARDGAI-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ-- 210 (305)
T ss_dssp CEEECTTSCE-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred CEEECCCCCE-EEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCc--
Confidence 5788899873 33211001 11357999999888754332 2222357899999998877653210
Q ss_pred CCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC
Q psy4818 213 TADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
......|+++++.+.......++... ......++.+++||+ |++.. ...|++++.++ .
T Consensus 211 --------~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~-lwv~~-----~~gv~~~~~~g-~------ 268 (305)
T 3dr2_A 211 --------GHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGW-LWSSS-----GTGVCVFDSDG-Q------ 268 (305)
T ss_dssp ----------CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSC-EEECC-----SSEEEEECTTS-C------
T ss_pred --------CCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCC-EEEec-----CCcEEEECCCC-C------
Confidence 01124788888764321111122111 011223578899999 44322 24599999865 1
Q ss_pred CCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEec
Q psy4818 293 KFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINL 335 (734)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 335 (734)
....+..........|+++++.||+.++. .||++++
T Consensus 269 --~~~~~~~~~~~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 269 --LLGHIPTPGTASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp --EEEEEECSSCCCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred --EEEEEECCCceeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 11222211122222378888888887753 4888765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0027 Score=64.99 Aligned_cols=190 Identities=8% Similarity=0.039 Sum_probs=104.3
Q ss_pred eEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC--CCceEEEEEEECCCCCcccccccccccCe
Q psy4818 115 SILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS--GSDWNTLHIKDVDTGKDYPEVLKNVKFPS 192 (734)
Q Consensus 115 ~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~--g~~~~~l~v~dl~~g~~~~~~~~~~~~~~ 192 (734)
..|++.+..++..+.++.... ....+..+.++|||+.++ +.... +.....|+.+|.++++............+
T Consensus 112 ~~i~~~d~~~~~~~~~~~~~~----~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIEDLS----TAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186 (333)
T ss_dssp CEEEEECTTSCSCEEEECSSS----SCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE
T ss_pred ceEEEEeCCCCEEEEEEccCc----cCCcccceEECCCCCEEE-EeccccccCCCceEEEEeCCCCEEEEeecCCCcccc
Confidence 357777655555443332110 112367889999997443 33211 11235799999887764332211112357
Q ss_pred eEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCC-----eeEEecCCCCeeEEEEEEecCCcEEEEE
Q psy4818 193 ISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKD-----IPVVEFPNGRSLGLHSEVTDCGRYLLVS 267 (734)
Q Consensus 193 ~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~-----~~v~~~~~~~~~~~~~~~SpDG~~l~~~ 267 (734)
++|+|||+.|+++... ...|+++++.+..... ........ .....++.+++||+..+ .
T Consensus 187 i~~~~dg~~l~v~~~~---------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v-~ 249 (333)
T 2dg1_A 187 IALSTDEKVLWVTETT---------------ANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYV-A 249 (333)
T ss_dssp EEECTTSSEEEEEEGG---------------GTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEE-E
T ss_pred eEECCCCCEEEEEeCC---------------CCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEE-E
Confidence 8999999988876531 2368888875421110 01111111 12445789999998433 2
Q ss_pred EecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc-------cceEEEEEecCCeEEEEeCCC--CCCceEEEEecCCC
Q psy4818 268 TSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM-------DHHHEIIANNGPELIVKTTKN--APKGKVVTINLNNP 338 (734)
Q Consensus 268 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~-------~~~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~ 338 (734)
.. ....|+++|.++ . ....+.... ......|++||+.||+.++.. .....|+++++...
T Consensus 250 ~~---~~~~v~~~d~~g-~--------~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 250 MY---GQGRVLVFNKRG-Y--------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp EE---TTTEEEEECTTS-C--------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred Ec---CCCEEEEECCCC-C--------EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccC
Confidence 21 125799998854 1 111121111 111223789988898887653 22457999987643
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.02 Score=60.13 Aligned_cols=232 Identities=13% Similarity=0.069 Sum_probs=117.1
Q ss_pred ceEEEEEEECCC-----CCccccc---ccccccCeeEE-----------E--cCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 166 DWNTLHIKDVDT-----GKDYPEV---LKNVKFPSISW-----------T--HDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 166 ~~~~l~v~dl~~-----g~~~~~~---~~~~~~~~~~w-----------S--pDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
..-.|.++|++. |+.+... ..+-....+.| + +|+++|+.... +.
T Consensus 41 ~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l---------------~s 105 (462)
T 2ece_A 41 RADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL---------------RS 105 (462)
T ss_dssp CCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT---------------TT
T ss_pred CCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC---------------CC
Confidence 345688889886 5543211 11111235567 8 88887776543 23
Q ss_pred cEEEEEECCCCCCCCeeEEec-------CCCCeeEEEEEEecCCcEEEEEEecC---CCCceEEEEeCCCCCCCcccCCC
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEF-------PNGRSLGLHSEVTDCGRYLLVSTSNN---TQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~-------~~~~~~~~~~~~SpDG~~l~~~~~~~---~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
.+|+++++.+...+-.++-.. +-+...-..+..+||| |+++.... .....|.++|.++++ +
T Consensus 106 ~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~---v---- 176 (462)
T 2ece_A 106 SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE---P---- 176 (462)
T ss_dssp CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC---E----
T ss_pred CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe---E----
Confidence 479999987654332222111 0011122356789999 55554332 122789999998732 1
Q ss_pred Cceeeecccc---ceEEE-EEecCCeEEEEeCCC----------------CCCceEEEEecCCCCCCCceEeecCC-CCc
Q psy4818 295 PLKTVIPGMD---HHHEI-IANNGPELIVKTTKN----------------APKGKVVTINLNNPCEKNWKTLIPED-ENR 353 (734)
Q Consensus 295 ~~~~l~~~~~---~~~~~-~s~dg~~l~~~s~~~----------------~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~ 353 (734)
......+.. -.+.+ |+|+++.+ ++++-. ....+|..+|+++++ ....+.-. +..
T Consensus 177 -~~~~~~~~~~~~~~Yd~~~~p~~~~m-vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k---~~~tI~vg~~g~ 251 (462)
T 2ece_A 177 -LGKWEIDRGDQYLAYDFWWNLPNEVL-VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK---RIHSLTLGEENR 251 (462)
T ss_dssp -EEECCSBCTTCCCCCCEEEETTTTEE-EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE---EEEEEESCTTEE
T ss_pred -EEEEccCCCCccccceEEECCCCCEE-EEccCcCccccccccchhhhhhccCCEEEEEECCCCc---EeeEEecCCCCC
Confidence 111111111 12333 79998844 455411 124579999998653 22222222 112
Q ss_pred eeEEEEE--e-eCCEEEEEEE---eCCceeEEEEECCCCce--eeeeCCC------------------CceEEeeccCcc
Q psy4818 354 TLDVVAA--V-ANNKLIVHYI---QNVRSVMDLHDLNTGKR--LHSFPLD------------------LGQITHISGRRK 407 (734)
Q Consensus 354 ~~~~~~~--~-~~~~l~~~~~---~~~~~~l~~~dl~~g~~--~~~l~~~------------------~g~v~~~~~~~d 407 (734)
....+.+ . +++.+|+... .+..+.|.++..++|+. .+.|..+ ......+..++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 2222222 2 3344444443 11224565544433432 1111100 122346677899
Q ss_pred cceEEEEEecCCCCceEEEEeC
Q psy4818 408 YNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 408 ~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.|+++.-.. ..+..||+
T Consensus 332 GrfLYVSnrg~---d~VavfdV 350 (462)
T 2ece_A 332 DKFLYLSLWGI---GEVRQYDI 350 (462)
T ss_dssp SCEEEEEETTT---TEEEEEEC
T ss_pred CCEEEEEeCCC---CEEEEEEe
Confidence 98888765443 57889998
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.014 Score=66.95 Aligned_cols=206 Identities=7% Similarity=0.021 Sum_probs=120.4
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC----cccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK----DYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~----~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..++.+++.+.+|.|+-... ..|+.+++.+.. ...... .-....+++..+.++.||++..
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~----~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~----------- 490 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----------- 490 (791)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET-----------
T ss_pred eEEEeecccCCeeEEeeccc----eeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec-----------
Confidence 46788999888777655432 368888887632 111111 1112367888888988887653
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
...+|++.++++.. ...+.... ...-.++++.|.+.+|+++... ....|+++++++. ....
T Consensus 491 ----~~~~I~v~~ldG~~--~~~l~~~~--l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~---------~~~~ 551 (791)
T 3m0c_C 491 ----VLGTVSVADTKGVK--RKTLFREN--GSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV---------DIYS 551 (791)
T ss_dssp ----TTTEEEEEETTSSS--EEEEEECT--TCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC---------CEEE
T ss_pred ----CCCeEEEEeCCCCe--EEEEEeCC--CCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC---------ceEE
Confidence 13479999987653 22233221 1123578999999999886532 2268999999871 1222
Q ss_pred eeccc-cceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC-CceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 299 VIPGM-DHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE-NRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 299 l~~~~-~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
++... ..-.. .+++.+++||+.-. ...+|.++++++.. .+.++.... .....++.+. +++||++-. ..
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~---~~~v~~~~~~l~~P~glav~-~~~lYwtD~--~~ 622 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDI--IN 622 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEET--TT
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCc---eEEEecCCCccCCCCEEEEe-CCEEEEEEC--CC
Confidence 33211 11112 26777888888632 34579999998765 344544321 1112244444 478887653 33
Q ss_pred eeEEEEECCCCceeeee
Q psy4818 376 SVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l 392 (734)
..|++++..+|+.++.|
T Consensus 623 ~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CEEEEEeCCCCcceEEe
Confidence 68889987788755544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0026 Score=67.46 Aligned_cols=155 Identities=6% Similarity=0.014 Sum_probs=89.2
Q ss_pred EEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc----c-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV----L-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 147 ~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~----~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
++|+|||+.|+++ +..+. ..|++++..++...... . ......+++++|++..||+ .. .
T Consensus 176 ia~~~~g~~l~~~-d~~~~--~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d-~------------ 238 (409)
T 3hrp_A 176 PAVTKDKQRVYSI-GWEGT--HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VD-S------------ 238 (409)
T ss_dssp CEECTTSSEEEEE-BSSTT--CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-EC-T------------
T ss_pred eeEecCCCcEEEE-ecCCC--ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EE-C------------
Confidence 8999999976554 43332 27999998876532111 1 1123367899997777877 32 1
Q ss_pred cCCcEEEEEECCCCCCCCeeEEec---CCCCeeE-E-EEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEF---PNGRSLG-L-HSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~---~~~~~~~-~-~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
..+|++++..+.. ..++.. ....... . +++++|++..|++... ....|++++.++ . .
T Consensus 239 --~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~---~~~~I~~~~~~g-~---------~ 300 (409)
T 3hrp_A 239 --NKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ---NLSSVYKITPDG-E---------C 300 (409)
T ss_dssp --TCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET---TTTEEEEECTTC-C---------E
T ss_pred --CCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEEeC---CCCEEEEEecCC-C---------E
Confidence 2379999887653 223311 0111122 2 7899998888876532 236899998875 1 1
Q ss_pred eeeecc---------------ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 297 KTVIPG---------------MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 297 ~~l~~~---------------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
..+... +..-.. .++++|+ ||+. +. ..+.+|.++++.++.
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyva-d~-~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIV-DG-FKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEE-ET-TTTCEEEEEETTTTE
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEE-eC-CCCCEEEEEECCCCE
Confidence 111110 111112 3788887 6654 32 035679999965554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0089 Score=62.73 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=118.4
Q ss_pred eC--CCCcEEEEEEeCCCCceEEEEEEECCCCCc---cccccc--------c-cccCeeEEEcCCcEEEEEEEecCCCCC
Q psy4818 149 FS--DNGKHFAYCLSKSGSDWNTLHIKDVDTGKD---YPEVLK--------N-VKFPSISWTHDHKGFFYNQYCDINGTA 214 (734)
Q Consensus 149 ~S--PDG~~la~~~~~~g~~~~~l~v~dl~~g~~---~~~~~~--------~-~~~~~~~wSpDg~~l~y~~~~~~~~~~ 214 (734)
+| +|+++|....-.+ ..|+|+|+++... +..++. + .....+.-+||| |+.+......
T Consensus 89 ~~~~~~r~~l~v~~l~s----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~--- 159 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRS----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEE--- 159 (462)
T ss_dssp CCTTCCSCEEEEEBTTT----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETT---
T ss_pred cCCCccCCEEEEccCCC----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcC---
Confidence 37 8999887654333 4699999976521 112221 1 122345678999 5554443321
Q ss_pred CCCcccccCCcEEEEEECCCCCCCCeeEEecC-CCCeeEEEEEEecCCcEEEEEEec------C---------CCCceEE
Q psy4818 215 DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP-NGRSLGLHSEVTDCGRYLLVSTSN------N---------TQGSDLH 278 (734)
Q Consensus 215 ~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~-~~~~~~~~~~~SpDG~~l~~~~~~------~---------~~~~~i~ 278 (734)
.+.+..|.+.+..|.... -.+... ....+.+++.|+||++.++.+... . .....|.
T Consensus 160 ------g~~~g~v~vlD~~T~~v~--~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~ 231 (462)
T 2ece_A 160 ------GEGPGGILMLDHYSFEPL--GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH 231 (462)
T ss_dssp ------SCSCCEEEEECTTTCCEE--EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred ------CCCCCeEEEEECCCCeEE--EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEE
Confidence 233457888887765421 111111 112344568999999976643210 0 1237899
Q ss_pred EEeCCCCCCCcccCCCCceeeeccccceE----EE-EEecCCeEEEEeC--CCCCCceEEEEecCCCCCCCce--Eee--
Q psy4818 279 YFDLHSLPDGKISGKFPLKTVIPGMDHHH----EI-IANNGPELIVKTT--KNAPKGKVVTINLNNPCEKNWK--TLI-- 347 (734)
Q Consensus 279 ~~d~~~~~~~~l~~~~~~~~l~~~~~~~~----~~-~s~dg~~l~~~s~--~~~~~~~l~~~d~~~~~~~~~~--~l~-- 347 (734)
+||++++ ++ ...+..+..... .+ ++|+|+++|+... .......|+++..+.+. |. .++
T Consensus 232 v~D~~~~---k~-----~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~---~~~~~vIdi 300 (462)
T 2ece_A 232 FWDLRKR---KR-----IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK---WNAEKVIEI 300 (462)
T ss_dssp EEETTTT---EE-----EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE---EEEEEEEEE
T ss_pred EEECCCC---cE-----eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc---eeEEEEEeC
Confidence 9999872 11 112222111111 11 4899998887665 00012345543333221 11 110
Q ss_pred cCC---------C------CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCC---ceeeeeCCC-C------------
Q psy4818 348 PED---------E------NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTG---KRLHSFPLD-L------------ 396 (734)
Q Consensus 348 ~~~---------~------~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g---~~~~~l~~~-~------------ 396 (734)
+.. + ......+.+..+++.++.++. +...|.++|+.+. +.+..+... .
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence 100 0 112233444444444444444 3367889987432 333344321 0
Q ss_pred -ceEEeeccCcccceEEEEE
Q psy4818 397 -GQITHISGRRKYNEVFYGF 415 (734)
Q Consensus 397 -g~v~~~~~~~d~~~l~~~~ 415 (734)
+.-..+..++|++.++++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 1124567788998888775
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0021 Score=69.96 Aligned_cols=246 Identities=10% Similarity=-0.005 Sum_probs=123.0
Q ss_pred EEeCC-----CCcEEEEEEeCCCCceEEEEEEECCCCCcccc-ccc-ccccCeeEE-E-cCCcEEEEEEEecCCCCCCCC
Q psy4818 147 YAFSD-----NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLK-NVKFPSISW-T-HDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 147 ~~~SP-----DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~-~~~~~~~~w-S-pDg~~l~y~~~~~~~~~~~~~ 217 (734)
+.+|. ||++|.. .+..+ ..|.++|+++.+.... ++. .....++++ + ||++++|........-..+|.
T Consensus 90 ~~~s~t~g~~DG~~lfV-nd~~~---~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFM-NDKAN---TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEETTEEEEEEEEE-EETTT---TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred cccCCCCCCcCCCEEEE-EcCCC---CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 67777 9997765 44332 4799999999885431 222 122346666 5 999998665421100001121
Q ss_pred c-c-cccCCcEEEEEECCCCCCCCeeEEec--CCCCeeEEEEEEecCCcEEEEEEecCCC--------------------
Q psy4818 218 E-T-TAHMGQKIYYHVLGTEQDKDIPVVEF--PNGRSLGLHSEVTDCGRYLLVSTSNNTQ-------------------- 273 (734)
Q Consensus 218 ~-~-~~~~~~~l~~~~l~t~~~~~~~v~~~--~~~~~~~~~~~~SpDG~~l~~~~~~~~~-------------------- 273 (734)
. . .......+-+++.++.+ .+.+. ..++ ..+..||||++++.+......
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~----v~~qI~Vgg~p---d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~ 238 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWE----VAWQVLVSGNL---DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI 238 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTE----EEEEEEESSCC---CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred ccccccccCceEEEEECCCCe----EEEEEEeCCCc---cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeec
Confidence 1 1 12233456777776542 22221 1122 356899999999887643211
Q ss_pred --------------CceEEEEeCCCCCCCcccCCCC-ceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCC
Q psy4818 274 --------------GSDLHYFDLHSLPDGKISGKFP-LKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNP 338 (734)
Q Consensus 274 --------------~~~i~~~d~~~~~~~~l~~~~~-~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 338 (734)
.+.+.++|..+.+ ... ...+-.+.....-.++|||+++|+ ++.. ...+.++|+++.
T Consensus 239 ~~~~~~v~~Gk~~~i~~V~VID~~~~~------~~~~~~~Ipvg~~PhGv~~sPDGk~v~V-~~~~--s~~VsVid~~~~ 309 (595)
T 1fwx_A 239 AEIEKAIAAGDYQELNGVKVVDGRKEA------SSLFTRYIPIANNPHGCNMAPDKKHLCV-AGKL--SPTVTVLDVTRF 309 (595)
T ss_dssp HHHHHHHHHTCSEEETTEEEEECSGGG------CCSSEEEEEEESSCCCEEECTTSSEEEE-ECTT--SSBEEEEEGGGH
T ss_pred cceeEeccCCCeeEECcEEEEeCcccC------CceeEEEEecCCCceEEEEcCCCCEEEE-eCCC--CCeEEEEECccc
Confidence 0235566665410 011 111111222222238999998775 4433 345888888743
Q ss_pred C------CCCceEeecCC-CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCC----------CceeeeeCCC--CceE
Q psy4818 339 C------EKNWKTLIPED-ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNT----------GKRLHSFPLD--LGQI 399 (734)
Q Consensus 339 ~------~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~----------g~~~~~l~~~--~g~v 399 (734)
. ...-..+...- .+.-...+.+..++.+|++..-+ +++..||+++ .+.+..++.. .|..
T Consensus 310 ~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld--sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~ 387 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD--SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL 387 (595)
T ss_dssp HHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT--TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE
T ss_pred ccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC--CcEEEEEhhHhhhhhcccccceeEEEeecccccccc
Confidence 1 00000011111 01112233444445555444333 6899999865 3344555443 2322
Q ss_pred E---eeccCcccceEEEE
Q psy4818 400 T---HISGRRKYNEVFYG 414 (734)
Q Consensus 400 ~---~~~~~~d~~~l~~~ 414 (734)
. +...++|++.++..
T Consensus 388 ~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 388 KTVMGETLDATNDWLVCL 405 (595)
T ss_dssp EETTTTSTTCCSSEEEEE
T ss_pred eeccceEeCCCCCEEEEc
Confidence 1 33567888776544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.80 E-value=0.012 Score=62.00 Aligned_cols=219 Identities=10% Similarity=0.012 Sum_probs=121.9
Q ss_pred EEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCC--CCCeeEEec
Q psy4818 168 NTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQ--DKDIPVVEF 245 (734)
Q Consensus 168 ~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~--~~~~~v~~~ 245 (734)
..|+.++++++.............+++|.+++..||++... ..+|++.++.+.. .....+...
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~---------------~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------------QRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT---------------TTEEEEEEC------CCCEEEECS
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC---------------CCeEEEEEcccCCCCCcceEEEeC
Confidence 36899999877643222221233689999988889887532 2378888886532 112233321
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTK 323 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~ 323 (734)
. .....++++.+.++.|++... ....|+++++++. ....++. ....-.. .+.|.++.||+.-..
T Consensus 157 ~--~~~p~glavD~~~~~lY~~d~---~~~~I~~~~~~g~---------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 157 D--IQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp S--CSCEEEEEEETTTTEEEEEET---TTTEEEEECTTTC---------SEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred C--CCCcccEEEEecCCceEEEEC---CCCeEEEEeCCCC---------ceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence 1 123357888888888887643 2368999999872 1223332 2221222 377777888876432
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeC-CC--CceE
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP-LD--LGQI 399 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~-~~--~g~v 399 (734)
...+|+++++++.. .+.++... -....++.+. +++.||++-. ....|+++|+ +|...+.+. .+ ....
T Consensus 223 --~~~~I~~~~~dG~~---~~~~~~~~-l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~-dG~~~~~~~~~~~~l~~P 293 (400)
T 3p5b_L 223 --TPAKIKKGGLNGVD---IYSLVTEN-IQWPNGITLDLLSGRLYWVDS--KLHSISSIDV-NGGNRKTILEDEKRLAHP 293 (400)
T ss_dssp --SSCCEEEEETTSCS---CEEEECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEET-TSCCCEEEEECSSTTSSE
T ss_pred --CCCEEEEEeCCCCc---cEEEEECC-CCceEEEEEEeCCCEEEEEEC--CCCEEEEEeC-CCCccEEEEeCCCCCCCC
Confidence 23579999998754 24444432 2334455555 4577887643 3468999999 565434432 11 1122
Q ss_pred EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 400 THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 400 ~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+++. +++.++++-.. -..|+++|.
T Consensus 294 ~gl~v--~~~~lywtd~~---~~~V~~~~~ 318 (400)
T 3p5b_L 294 FSLAV--FEDKVFWTDII---NEAIFSANR 318 (400)
T ss_dssp EEEEE--ETTEEEEEESS---SCSEEEEES
T ss_pred EEEEE--eCCEEEEecCC---CCeEEEEEc
Confidence 23433 34455554321 235777775
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.023 Score=63.64 Aligned_cols=225 Identities=8% Similarity=0.011 Sum_probs=134.0
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEE
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISW 195 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~w 195 (734)
|.+.+..+.....++-...+ ....++.|++++.+|.++-... ..|+.++++++........+ ....+++.
T Consensus 17 I~~i~l~~~~~~~~~~~~~~-----~~~~~l~~d~~~~~lywtD~~~----~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 17 IRRISLETNNNNVAIPLTGV-----KEASALDFDVTDNRIYWTDISL----KTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEESSCTTCEEECCCCSC-----SCEEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEECCCCCcceEEEcCCC-----CceEEEEEECCCCEEEEEECCC----CeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 56666544433443332222 2256789999998887765433 36899998876432211111 12357888
Q ss_pred EcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEE-ecCCCCeeEEEEEEecCCcEEEEEEecCCCC
Q psy4818 196 THDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQG 274 (734)
Q Consensus 196 SpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~-~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 274 (734)
.+.++.||++.. ...+|.+.++++... ..+. ..-. .-.++++.|...+|+++... ..
T Consensus 88 D~~~~~LY~tD~---------------~~~~I~v~~~dG~~~--~~l~~~~l~---~P~~iavdp~~G~lY~tD~g--~~ 145 (628)
T 4a0p_A 88 DWLGKNLYWADT---------------GTNRIEVSKLDGQHR--QVLVWKDLD---SPRALALDPAEGFMYWTEWG--GK 145 (628)
T ss_dssp ETTTTEEEEEET---------------TTTEEEEEETTSTTC--EEEECSSCC---CEEEEEEETTTTEEEEEECS--SS
T ss_pred EeCCCEEEEEEC---------------CCCEEEEEecCCCcE--EEEEeCCCC---CcccEEEccCCCeEEEeCCC--CC
Confidence 888888888642 134789888876532 2233 2222 23578999988888876532 24
Q ss_pred ceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc
Q psy4818 275 SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 275 ~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 353 (734)
..|+.+++++. ....++.+...-.. .+++++++||+.-. ....|.++++++.. ..++...-..
T Consensus 146 ~~I~r~~~dG~---------~~~~l~~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~----~~v~~~~l~~ 209 (628)
T 4a0p_A 146 PKIDRAAMDGS---------ERTTLVPNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLN----REVIADDLPH 209 (628)
T ss_dssp CEEEEEETTSC---------SCEEEECSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS----CEEEEECCSC
T ss_pred CEEEEEeCCCC---------ceEEEECCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCc----eEEeeccCCC
Confidence 69999999872 22333332222222 27888899988643 24579999998755 2344333222
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
. .++.+.. +++|++-. ....|+++|..+|+..+.+
T Consensus 210 P-~glav~~-~~ly~tD~--~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 210 P-FGLTQYQ-DYIYWTDW--SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp E-EEEEEET-TEEEEEET--TTTEEEEEETTTCCSCEEE
T ss_pred c-eEEEEEC-CEEEEecC--CCCEEEEEECCCCCceEEE
Confidence 2 3454554 78887653 2357889997777654433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.002 Score=66.60 Aligned_cols=249 Identities=10% Similarity=0.021 Sum_probs=124.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc----c---cccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV----L---KNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~----~---~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
..++++||||+.++ +....+....+|+.++ +|+..+.. . .-....+++++|||+ |+.+....
T Consensus 19 p~~va~~~~g~~~v-~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~------- 87 (343)
T 2qe8_A 19 PGNITLTPDGRLFL-SLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN------- 87 (343)
T ss_dssp EEEEEECTTSCEEE-EECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH-------
T ss_pred cceEEECCCCCEEE-EeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC-------
Confidence 56899999998533 3222111114678777 55533110 0 011235789999975 66553210
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCC----CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPN----GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
......+|+++++.++.. +..+..+. ...+..+++++|++..++++.........|+++|+.++....+..
T Consensus 88 ---~~~~~~~i~~~d~~tg~~--~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 88 ---QSKSVPKLVAWDTLNNQL--SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp ---HHTSCCEEEEEETTTTEE--EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred ---CcCCCCeEEEEECCCCeE--EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 000134788888876531 12222211 112345788999887777664321133689999987643211110
Q ss_pred C---C---Cceeeeccc---------------cceEE-EEEecCCeEEEEeCCCCCCceEEEEecCC---CCC------C
Q psy4818 293 K---F---PLKTVIPGM---------------DHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNN---PCE------K 341 (734)
Q Consensus 293 ~---~---~~~~l~~~~---------------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~---~~~------~ 341 (734)
. . +......+. ..... .|+|||+.||+.... ..+|++++.+. +.. .
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH---STSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS---CSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC---CCeEEEEEHHHhcCCCCChhhhhc
Confidence 0 0 000000100 01122 389999989887553 23799988531 110 0
Q ss_pred CceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEec
Q psy4818 342 NWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss 417 (734)
.+. ...+. ....++.+..++.++++...+ ..|.+||.++|+....+..+ .....++.+++++ .++++.+.
T Consensus 240 ~~~-~~g~~--g~pdgia~d~~G~l~va~~~~--~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~ 310 (343)
T 2qe8_A 240 KIE-RYSEK--PICDGISIDKDHNIYVGDLAH--SAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQ 310 (343)
T ss_dssp TCE-EEEEC--CSCSCEEECTTCCEEEEEGGG--TEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEECC
T ss_pred ceE-ecccC--CCCceEEECCCCCEEEEccCC--CeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeCc
Confidence 011 11111 112234444446677665333 58999998667653333333 2234466666664 56665543
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00016 Score=70.10 Aligned_cols=145 Identities=13% Similarity=0.067 Sum_probs=85.7
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccH----------------HHHHHHHhcCeEE
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSI----------------SRCMFLRHFNGIY 521 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~----------------~~~~~l~~~G~~v 521 (734)
.-.+.+....+..+..+++..+. .....|++|+++||||.+... .+.. .-..|.. -..+
T Consensus 21 sGy~~v~~~~~~~lFywf~es~~--~~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~~--~anv 96 (255)
T 1whs_A 21 SGYITVDEGAGRSLFYLLQEAPE--DAQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNK--VANV 96 (255)
T ss_dssp EEEEEEETTTTEEEEEEEECCCG--GGCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGGG--TSEE
T ss_pred EEEEECCCCCCcEEEEEEEEecC--CCCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccccc--cCCE
Confidence 34455655567778777776543 235689999999999987654 2100 0012322 4778
Q ss_pred EEEecccCCCCCchhhhccc-cccCCCchhHHHHHHHH-HHHcCCCCCCcEEEEEcChHHHHHHHHHhc----C-C-Cce
Q psy4818 522 AIPNIRGGGELGEDWHNAGR-LLKKQNCFDDFQAAAEY-MINKKYTKPKYITIMGGSNGGLLVGACLNQ----R-P-ELY 593 (734)
Q Consensus 522 ~~~~~rG~~~~g~~~~~~~~-~~~~~~~~~D~~~~~~~-l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~----~-p-~~~ 593 (734)
+.+|.+-|.||...-..... ........+|+...++. +..........+.|+|.||||..+..++.. . + =.+
T Consensus 97 lfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inL 176 (255)
T 1whs_A 97 LFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINL 176 (255)
T ss_dssp EEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEE
T ss_pred EEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCccccc
Confidence 99997655555422111110 00111234455554443 333333445679999999999998877642 1 2 257
Q ss_pred eEEEEcCCcchhcc
Q psy4818 594 GAALILVGALDMLR 607 (734)
Q Consensus 594 ~a~v~~~~~~d~~~ 607 (734)
+++++..|++|...
T Consensus 177 kGi~ign~~~d~~~ 190 (255)
T 1whs_A 177 KGFMVGNGLIDDYH 190 (255)
T ss_dssp EEEEEEEECCBHHH
T ss_pred ceEEecCCccCHHH
Confidence 99999999988653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0032 Score=64.37 Aligned_cols=240 Identities=12% Similarity=0.084 Sum_probs=125.1
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--------------------cccccCeeEEEcCCcEEEE
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--------------------KNVKFPSISWTHDHKGFFY 204 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--------------------~~~~~~~~~wSpDg~~l~y 204 (734)
.+++|+|||+.+ |+...+ ..|+.+|..+++...... ......++++.+++..|+.
T Consensus 22 ~~i~~d~~g~~l-~v~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 22 NSFTFDSTNKGF-YTSVQD----GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp CCEECCTTCSSE-EEECTT----SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred eEEEEcCCCCEE-EEEcCC----CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 468899998844 333222 358888888765321100 0012346788874445665
Q ss_pred EEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCC--CeeEEEEEEec-CCcEEEEEEecC----------
Q psy4818 205 NQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG--RSLGLHSEVTD-CGRYLLVSTSNN---------- 271 (734)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~--~~~~~~~~~Sp-DG~~l~~~~~~~---------- 271 (734)
+... ..|++++..++.. ..+...... .....++.+.+ ||+ |++.....
T Consensus 97 ~d~~----------------~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 97 VDCY----------------YHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp EETT----------------TEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHH
T ss_pred EECC----------------CCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCccccccccccee
Confidence 5321 1466666554321 112111111 11345688999 886 44443221
Q ss_pred ----CCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEe
Q psy4818 272 ----TQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 346 (734)
Q Consensus 272 ----~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 346 (734)
.....|+++|.+++ ....+......... .+++||+.||+.... ..+|+++++++......+.+
T Consensus 158 ~~~~~~~g~v~~~d~~~~---------~~~~~~~~~~~p~gia~~~dg~~lyv~d~~---~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTK---------ETTLLLKELHVPGGAEVSADSSFVLVAEFL---SHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHTCCCEEEEEEETTTT---------EEEEEEEEESCCCEEEECTTSSEEEEEEGG---GTEEEEEESSSTTTTCEEEE
T ss_pred hcccCCCceEEEEeCCCC---------EEEEeccCCccCcceEECCCCCEEEEEeCC---CCeEEEEECCCCcCCccceE
Confidence 11257999998762 12222222111122 388999888876432 45799999876422222333
Q ss_pred ecCCCCceeEEEEEeeCCEEEEEEEe--------CCceeEEEEECCCCceeeeeCCCCc----eEEeeccCcccceEEEE
Q psy4818 347 IPEDENRTLDVVAAVANNKLIVHYIQ--------NVRSVMDLHDLNTGKRLHSFPLDLG----QITHISGRRKYNEVFYG 414 (734)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~dl~~g~~~~~l~~~~g----~v~~~~~~~d~~~l~~~ 414 (734)
.. .+. ...+....++.+++.... .....|+++|. +|+.++.+..+.+ .+..+.. ++++|++.
T Consensus 226 ~~-~~g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~ 299 (322)
T 2fp8_A 226 VK-IPN--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE--HDGLLYIG 299 (322)
T ss_dssp EE-CSS--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE--ETTEEEEE
T ss_pred Ee-CCC--CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE--eCCEEEEe
Confidence 22 212 445555554667766544 11357999998 6887776665432 2222222 34566664
Q ss_pred EecCCCCceEEEEeC
Q psy4818 415 FTSFLQPGTIYHCNI 429 (734)
Q Consensus 415 ~ss~~~P~~~~~~d~ 429 (734)
... ...|.++++
T Consensus 300 ~~~---~~~i~~~~~ 311 (322)
T 2fp8_A 300 TLF---HGSVGILVY 311 (322)
T ss_dssp CSS---CSEEEEEEC
T ss_pred ecC---CCceEEEec
Confidence 321 246777777
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00012 Score=79.09 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=74.7
Q ss_pred CCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh--cc------ccccCCCchhHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN--AG------RLLKKQNCFDDFQAA 555 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~--~~------~~~~~~~~~~D~~~~ 555 (734)
.+..|++|++ ||-+.... ..-...+..+..+.|..+++...|- ||++.-- .. +-..-...+.|+...
T Consensus 40 ~~~gPIfl~~-gGEg~~~~~~~~~g~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~st~~~nL~yLt~eQALaD~a~f 115 (472)
T 4ebb_A 40 RGEGPIFFYT-GNEGDVWAFANNSAFVAELAAERGALLVFAEHRY---YGKSLPFGAQSTQRGHTELLTVEQALADFAEL 115 (472)
T ss_dssp TTTCCEEEEE-CCSSCHHHHHHHCHHHHHHHHHHTCEEEEECCTT---STTCCTTGGGGGSTTSCTTCSHHHHHHHHHHH
T ss_pred CCCCcEEEEE-CCCccccccccCccHHHHHHHHhCCeEEEEeccc---ccCCcCCCCCCccccccccCCHHHHHHHHHHH
Confidence 3457888887 44332110 0011223456666799999999998 6655321 10 001122456788888
Q ss_pred HHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 556 AEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 556 ~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
++++....-....+++++|+||||.|++++-.++|++|.++++.++
T Consensus 116 i~~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSA 161 (472)
T 4ebb_A 116 LRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASA 161 (472)
T ss_dssp HHHHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEeccc
Confidence 8888665434456899999999999999999999999988887654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0078 Score=58.67 Aligned_cols=203 Identities=11% Similarity=0.041 Sum_probs=117.5
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-cc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.+++++|.||++.|+.+.+.. ..|+.+|++ |+.+... .. ..+..++++.+||+ ++++..
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~--~~vs~E------------ 88 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ--FVISDE------------ 88 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE--EEEEET------------
T ss_pred CcceeEEeCCCCEEEEEECCC----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE--EEEEEC------------
Confidence 389999999999887777653 579999998 7654422 22 23446889988874 334432
Q ss_pred ccCCcEEEEEECCCCCC-CCeeEEe-----cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC
Q psy4818 221 AHMGQKIYYHVLGTEQD-KDIPVVE-----FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF 294 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~-~~~~v~~-----~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 294 (734)
+..++++..++.... ..+.... .+.+. -+.+++|+|+++.|++...+. ...||.++-- ... .
T Consensus 89 --~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~-g~EGLA~d~~~~~L~va~E~~--p~~i~~~~g~--~~~-----~ 156 (255)
T 3qqz_A 89 --RDYAIYVISLTPNSEVKILKKIKIPLQESPTNC-GFEGLAYSRQDHTFWFFKEKN--PIEVYKVNGL--LSS-----N 156 (255)
T ss_dssp --TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSS-CCEEEEEETTTTEEEEEEESS--SEEEEEEEST--TCS-----S
T ss_pred --CCCcEEEEEcCCCCeeeeeeeeccccccccccC-CcceEEEeCCCCEEEEEECcC--CceEEEEccc--ccC-----C
Confidence 124677777765432 0011111 11122 246899999999988765432 3578888711 000 0
Q ss_pred Cceeee--------ccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-----CCceeEEEEEe
Q psy4818 295 PLKTVI--------PGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-----ENRTLDVVAAV 361 (734)
Q Consensus 295 ~~~~l~--------~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~~~~ 361 (734)
....+. .-.+...-.+.|..+++|+++... ..|+.+|.++.. .....|.+.. .....+++.+.
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s---~~L~~~d~~g~~-~~~~~L~~g~~~l~~~~~qpEGia~d 232 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES---RALQEVTLVGEV-IGEMSLTKGSRGLSHNIKQAEGVAMD 232 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT---TEEEEECTTCCE-EEEEECSTTGGGCSSCCCSEEEEEEC
T ss_pred ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCC---CeEEEEcCCCCE-EEEEEcCCccCCcccccCCCCeeEEC
Confidence 111110 001111123778888999998863 569999987642 1122233221 01245778777
Q ss_pred eCCEEEEEEEeCCceeEEEEEC
Q psy4818 362 ANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~~~dl 383 (734)
+++.+|++... +.+|++..
T Consensus 233 ~~G~lyIvsE~---n~~y~f~~ 251 (255)
T 3qqz_A 233 ASGNIYIVSEP---NRFYRFTP 251 (255)
T ss_dssp TTCCEEEEETT---TEEEEEEC
T ss_pred CCCCEEEEcCC---ceEEEEEe
Confidence 76788877433 47888865
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0019 Score=63.72 Aligned_cols=193 Identities=11% Similarity=0.088 Sum_probs=103.2
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
..+++++|||+ |.++ +.. ..|+++|..++......... ....+++++|||+ |+++...
T Consensus 69 p~~i~~~~~g~-l~v~-~~~----~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~-------------- 127 (270)
T 1rwi_B 69 PQGLAVDGAGT-VYVT-DFN----NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG-------------- 127 (270)
T ss_dssp CCCEEECTTCC-EEEE-ETT----TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGG--------------
T ss_pred cceeEECCCCC-EEEE-cCC----CEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEECC--------------
Confidence 45789999998 4433 332 36999998876543222111 2235788999997 5544321
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
...|++++.++... ..... .......++++++||+ |++... ....|++++.+++.. .......
T Consensus 128 -~~~i~~~~~~~~~~---~~~~~-~~~~~p~~i~~~~~g~-l~v~~~---~~~~i~~~~~~~~~~--------~~~~~~~ 190 (270)
T 1rwi_B 128 -NNRVVKLAAGSKTQ---TVLPF-TGLNDPDGVAVDNSGN-VYVTDT---DNNRVVKLEAESNNQ--------VVLPFTD 190 (270)
T ss_dssp -GTEEEEECTTCCSC---EECCC-CSCCSCCCEEECTTCC-EEEEEG---GGTEEEEECTTTCCE--------EECCCSS
T ss_pred -CCEEEEEECCCcee---Eeecc-ccCCCceeEEEeCCCC-EEEEEC---CCCEEEEEecCCCce--------EeecccC
Confidence 23677776554321 11111 1111234688999998 444332 225899999876210 0001111
Q ss_pred ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEE
Q psy4818 303 MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381 (734)
Q Consensus 303 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 381 (734)
...... .++++| .+|+.... ...|++++.++.. ...+..........+.+..++.++++...+ ..|.++
T Consensus 191 ~~~p~~i~~d~~g-~l~v~~~~---~~~v~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~--~~v~~~ 260 (270)
T 1rwi_B 191 ITAPWGIAVDEAG-TVYVTEHN---TNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSDRTVYVADRGN--DRVVKL 260 (270)
T ss_dssp CCSEEEEEECTTC-CEEEEETT---TSCEEEECTTCSC----CEECCCCSCSCEEEEEECTTCCEEEEEGGG--TEEEEE
T ss_pred CCCceEEEECCCC-CEEEEECC---CCcEEEEcCCCCc----ceeeccCCCCCceeEEECCCCCEEEEECCC--CEEEEE
Confidence 111122 266776 67766543 3459999987643 222222211334455554445676665433 578888
Q ss_pred ECC
Q psy4818 382 DLN 384 (734)
Q Consensus 382 dl~ 384 (734)
++.
T Consensus 261 ~~~ 263 (270)
T 1rwi_B 261 TSL 263 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 774
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.015 Score=58.08 Aligned_cols=231 Identities=12% Similarity=0.070 Sum_probs=125.0
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.+.++.++|||+. .++. ..+ ..|+++|.. ++...... ......++++++||+ |+++...
T Consensus 16 ~~~~i~~d~~g~l-~v~~-~~~---~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~------------ 76 (299)
T 2z2n_A 16 GPYGITVSDKGKV-WITQ-HKA---NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENA------------ 76 (299)
T ss_dssp CEEEEEECTTSCE-EEEE-TTT---TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETT------------
T ss_pred CccceEECCCCCE-EEEe-cCC---CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCC------------
Confidence 3678899999984 3333 222 268999988 65432111 112235788889886 5555421
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
...|++++... ....+..+.......++.+++||+. ++... ....|+++|.++ . .....
T Consensus 77 ---~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~---~~~~i~~~d~~g-~---------~~~~~ 135 (299)
T 2z2n_A 77 ---ANKIGRITKKG----IIKEYTLPNPDSAPYGITEGPNGDI-WFTEM---NGNRIGRITDDG-K---------IREYE 135 (299)
T ss_dssp ---TTEEEEECTTS----CEEEEECSSTTCCEEEEEECTTSCE-EEEET---TTTEEEEECTTC-C---------EEEEE
T ss_pred ---CCeEEEECCCC----cEEEEeCCCcCCCceeeEECCCCCE-EEEec---CCceEEEECCCC-C---------EEEec
Confidence 22577777542 1222332222224567889999974 33321 235789998833 1 11111
Q ss_pred -c-cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 301 -P-GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 301 -~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
. ....... .++++| .+|+.... ...|++++. ++. +..+...........+.+..++.+++.... ...
T Consensus 136 ~~~~~~~~~~i~~~~~g-~l~v~~~~---~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~ 205 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDN-ALWFTENQ---NNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEII--GNK 205 (299)
T ss_dssp CSSTTCCEEEEEECTTS-CEEEEETT---TTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETT--TTE
T ss_pred CCCCCCCCceEEEcCCC-CEEEEeCC---CCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccC--Cce
Confidence 1 1111122 256666 46665542 346999998 443 333311211233445555444667665432 357
Q ss_pred EEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|++++. +|+.. .+..+ ...+.++..++++. +++.... ...++++|.
T Consensus 206 i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~---~~~i~~~d~ 253 (299)
T 2z2n_A 206 IGRITT-SGEIT-EFKIPTPNARPHAITAGAGID-LWFTEWG---ANKIGRLTS 253 (299)
T ss_dssp EEEECT-TCCEE-EEECSSTTCCEEEEEECSTTC-EEEEETT---TTEEEEEET
T ss_pred EEEECC-CCcEE-EEECCCCCCCceeEEECCCCC-EEEeccC---CceEEEECC
Confidence 999999 77753 33222 34455677777764 6665422 347889987
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.026 Score=64.72 Aligned_cols=186 Identities=9% Similarity=-0.001 Sum_probs=106.6
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC--CCeeEEecC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD--KDIPVVEFP 246 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~--~~~~v~~~~ 246 (734)
.|+.+++.++.............+++|.+.+..||++... ..+|++.++.+... ....+....
T Consensus 405 ~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~---------------~~~I~~~~l~g~~~~~~~~~vi~~~ 469 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------------QRMICSTQLDRAHGVSSYDTVISRD 469 (791)
T ss_dssp SEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT---------------TTEEEEEEC--------CEEEECSS
T ss_pred ceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc---------------ceeEEEEeccCCCCCcceeEEEecC
Confidence 4778888776543222222223578999988888877532 23788888875321 222333311
Q ss_pred CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceEE-EEEecCCeEEEEeCCC
Q psy4818 247 NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE-IIANNGPELIVKTTKN 324 (734)
Q Consensus 247 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~ 324 (734)
.....++++.+.++.|+++.. ....|+++++++. ....++. ....-.. .+.|.++.|||.-.
T Consensus 470 --l~~P~GLAvD~~~~~LY~tD~---~~~~I~v~~ldG~---------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~-- 533 (791)
T 3m0c_C 470 --IQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDW-- 533 (791)
T ss_dssp --CSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEEC--
T ss_pred --CCCcceeeeeecCCcEEEEec---CCCeEEEEeCCCC---------eEEEEEeCCCCCcceEEEecCCCCEEEecC--
Confidence 112246889999999887643 2368999999872 1233332 2221222 37787788887643
Q ss_pred CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 325 APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 325 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
+...+|.++++++.. .+.++... -....++.+. .++.||++- .....|+++++ +|...+.+
T Consensus 534 g~~~~I~~~~~dG~~---~~~lv~~~-l~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~-dG~~~~~v 595 (791)
T 3m0c_C 534 GTPAKIKKGGLNGVD---IYSLVTEN-IQWPNGITLDLLSGRLYWVD--SKLHSISSIDV-NGGNRKTI 595 (791)
T ss_dssp SSSCEEEEEETTSCC---EEEEECSS-CSCEEEEEEETTTTEEEEEE--TTTTEEEEEET-TSCSCEEE
T ss_pred CCCCeEEEEecCCCc---eEEEEeCC-CCCceEEEEecCCCeEEEEe--CCCCcEEEEec-CCCceEEE
Confidence 223579999998765 24444433 2233455554 457888764 33468999999 56544443
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=77.64 Aligned_cols=141 Identities=11% Similarity=0.127 Sum_probs=81.0
Q ss_pred ceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHH----------------HHHHHHhcCeE
Q psy4818 457 FQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSIS----------------RCMFLRHFNGI 520 (734)
Q Consensus 457 ~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~----------------~~~~l~~~G~~ 520 (734)
+....-.++..++..+..+++..++ .....|+||++|||||.+....+... -..| . +-..
T Consensus 19 ~~~~sGyv~v~~~~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw-~-~~~~ 94 (452)
T 1ivy_A 19 FRQYSGYLKSSGSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSW-N-LIAN 94 (452)
T ss_dssp SCEEEEEEECSTTEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCG-G-GSSE
T ss_pred ceeeEEEEeeCCCCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCcc-c-cccc
Confidence 4444444555566777777665433 12468999999999998643211000 0112 2 2577
Q ss_pred EEEEecccCCCCCchhhhccccccCC---CchhHHHH-HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh----cCCCc
Q psy4818 521 YAIPNIRGGGELGEDWHNAGRLLKKQ---NCFDDFQA-AAEYMINKKYTKPKYITIMGGSNGGLLVGACLN----QRPEL 592 (734)
Q Consensus 521 v~~~~~rG~~~~g~~~~~~~~~~~~~---~~~~D~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~----~~p~~ 592 (734)
++.+|.+-|.||... .. ..... ...+|+.. ..+|+.........++.|+|.||||..+..++. ..+-.
T Consensus 95 ~lfiDqP~GtGfS~~--~~--~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~ 170 (452)
T 1ivy_A 95 VLYLESPAGVGFSYS--DD--KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMN 170 (452)
T ss_dssp EEEECCSTTSTTCEE--SS--CCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSC
T ss_pred EEEEecCCCCCcCCc--CC--CCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccc
Confidence 999996444445421 11 11111 12334433 344444432344568999999999995555443 33456
Q ss_pred eeEEEEcCCcchh
Q psy4818 593 YGAALILVGALDM 605 (734)
Q Consensus 593 ~~a~v~~~~~~d~ 605 (734)
++++++..|++|.
T Consensus 171 l~g~~ign~~~d~ 183 (452)
T 1ivy_A 171 LQGLAVGNGLSSY 183 (452)
T ss_dssp EEEEEEESCCSBH
T ss_pred cceEEecCCccCh
Confidence 8999999998764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0066 Score=58.93 Aligned_cols=191 Identities=8% Similarity=-0.007 Sum_probs=113.1
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.++.|+ ++.||.+... ..+|..+++.+++..... . +. ..| +...+++|+.|+....
T Consensus 58 qGL~~~--~~~Ly~stG~---------------~g~v~~iD~~Tgkv~~~~-l--~~-~~F--geGit~~g~~Ly~ltw- 113 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGH---------------QGTLRQLSLESAQPVWME-R--LG-NIF--AEGLASDGERLYQLTW- 113 (268)
T ss_dssp EEEEEE--TTEEEEEETT---------------TTEEEECCSSCSSCSEEE-E--CT-TCC--EEEEEECSSCEEEEES-
T ss_pred ceEEEE--CCEEEEEcCC---------------CCEEEEEECCCCcEEeEE-C--CC-Ccc--eeEEEEeCCEEEEEEc-
Confidence 366775 5677666532 124888888887654433 2 22 212 3346678888876543
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED 350 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 350 (734)
..+.++++|.+++. ...-+.-...++. +++||++||. ++ + ..+|+.+|.++.+. ...+.-..
T Consensus 114 --~~~~v~V~D~~Tl~---------~~~ti~~~~eGwG-Lt~Dg~~L~v-Sd--G-s~~l~~iDp~T~~v--~~~I~V~~ 175 (268)
T 3nok_A 114 --TEGLLFTWSGMPPQ---------RERTTRYSGEGWG-LCYWNGKLVR-SD--G-GTMLTFHEPDGFAL--VGAVQVKL 175 (268)
T ss_dssp --SSCEEEEEETTTTE---------EEEEEECSSCCCC-EEEETTEEEE-EC--S-SSEEEEECTTTCCE--EEEEECEE
T ss_pred --cCCEEEEEECCcCc---------EEEEEeCCCceeE-EecCCCEEEE-EC--C-CCEEEEEcCCCCeE--EEEEEeCC
Confidence 23789999998831 1111111112222 6688987775 44 2 45799999887542 12221111
Q ss_pred CC---ceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-------------CceEEeeccCcccceEEEE
Q psy4818 351 EN---RTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-------------LGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 351 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-------------~g~v~~~~~~~d~~~l~~~ 414 (734)
.. ..+..+.+.+ +.+++..-. ...|.++|+++|+.+..|... .....+++.++++++++++
T Consensus 176 ~g~~v~~lNeLe~~d-G~lyanvw~--s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 176 RGQPVELINELECAN-GVIYANIWH--SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp TTEECCCEEEEEEET-TEEEEEETT--CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred CCcccccccccEEeC-CEEEEEECC--CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 11 1233455555 677755422 358999999999987777542 1245678888888888887
Q ss_pred EecCCCCceEEEEeC
Q psy4818 415 FTSFLQPGTIYHCNI 429 (734)
Q Consensus 415 ~ss~~~P~~~~~~d~ 429 (734)
---+ +.+|.+.+
T Consensus 253 GK~W---p~~~ev~~ 264 (268)
T 3nok_A 253 GKLW---PRLFEVRL 264 (268)
T ss_dssp ETTC---SEEEEEEE
T ss_pred CCCC---CceEEEEE
Confidence 6555 35776654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0073 Score=61.32 Aligned_cols=181 Identities=10% Similarity=0.080 Sum_probs=94.8
Q ss_pred EEEEEEECC-CCCcccc-cccccccCeeEEEc---CCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeE
Q psy4818 168 NTLHIKDVD-TGKDYPE-VLKNVKFPSISWTH---DHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPV 242 (734)
Q Consensus 168 ~~l~v~dl~-~g~~~~~-~~~~~~~~~~~wSp---Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v 242 (734)
..|.+|++. +|+.+.. .........++||| |++.|+-.+.|. .|.+|++.+++. +..
T Consensus 157 ~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~----------------TIkIWDl~TGk~--l~t 218 (356)
T 2w18_A 157 QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMN----------------NIVIWNLKTGQL--LKK 218 (356)
T ss_dssp CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTS----------------EEEEEETTTCCE--EEE
T ss_pred CcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCC----------------cEEEEECCCCcE--EEE
Confidence 579999984 4664331 12222336788999 667777666433 799999988752 223
Q ss_pred EecCC-CCeeEEEEEEecCCcEEEEEEe--------cCCCCceEEEEeCCCCCCCcccCCCCceeee----ccccceEEE
Q psy4818 243 VEFPN-GRSLGLHSEVTDCGRYLLVSTS--------NNTQGSDLHYFDLHSLPDGKISGKFPLKTVI----PGMDHHHEI 309 (734)
Q Consensus 243 ~~~~~-~~~~~~~~~~SpDG~~l~~~~~--------~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~----~~~~~~~~~ 309 (734)
+.... ........+|||||+.++.... .+.....|.+||..++. ....+. .+.......
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--------~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--------SVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE--------EEEEEEECCCTTCCCCEEE
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--------EEEEEEeeccCCCcceeEc
Confidence 33211 1112345689999999875432 12223678888887731 111110 011111111
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
.+.++..++-.+. +..|.+||+.+++ ....+.+....++..+.+..++..+++...| ..|++||+
T Consensus 291 g~~sg~~lASgS~----DgTIkIWDl~tGk---~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D--~TIklWd~ 355 (356)
T 2w18_A 291 GDVKDHCAAAILT----SGTIAIWDLLLGQ---CTALLPPVSDQHWSFVKWSGTDSHLLAGQKD--GNIFVYHY 355 (356)
T ss_dssp EEEETTEEEEEET----TSCEEEEETTTCS---EEEEECCC--CCCCEEEECSSSSEEEEECTT--SCEEEEEE
T ss_pred cccCCCEEEEEcC----CCcEEEEECCCCc---EEEEecCCCCCeEEEEEECCCCCEEEEEECC--CcEEEecC
Confidence 1222333332222 3469999998876 2333332223344444454446777777666 46778874
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.013 Score=62.37 Aligned_cols=159 Identities=10% Similarity=0.097 Sum_probs=88.6
Q ss_pred EeeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
-.+++++| ++..| |..+.. ..|+++|+++++............+++|++||+.||.+..... .
T Consensus 139 P~~lavdp~~~g~L-yv~d~~----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~-----------~ 202 (430)
T 3tc9_A 139 AVWLSFDPKNHNHL-YLVGEQ----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNN-----------N 202 (430)
T ss_dssp CCEEEEETTEEEEE-EEEEBT----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSC-----------T
T ss_pred CCEEEECCCCCCeE-EEEeCC----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCC-----------c
Confidence 45789999 45554 455543 6799999998764332222223367999999997777653210 1
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP- 301 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~- 301 (734)
....++........... ..+.....+ .+++++|++.+|++... ...+|++++.+++. ...+..
T Consensus 203 ~~~~v~~~~~~g~~~~~-~~l~~~~~p---~giavdp~~g~lyv~d~---~~~~V~~~~~~~~~---------~~~~~~~ 266 (430)
T 3tc9_A 203 DRPNNYILTRESGFKVI-TELTKGQNC---NGAETHPINGELYFNSW---NAGQVFRYDFTTQE---------TTPLFTI 266 (430)
T ss_dssp TSEEEEEEEGGGTSCSE-EEEEECSSC---CCEEECTTTCCEEEEET---TTTEEEEEETTTTE---------EEEEEEC
T ss_pred ccceEEEEeCCCceeee-eeeccCCCc---eEEEEeCCCCEEEEEEC---CCCEEEEEECCCCc---------EEEEEEc
Confidence 11234444433322111 112111222 35789996556666532 23689999998621 111111
Q ss_pred -cc-cceEEEEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 302 -GM-DHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 302 -~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
.. ....-.++|+|++||+.... +.+|++++.++
T Consensus 267 ~~~~~P~gia~~pdG~~lyv~d~~---~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 QDSGWEFHIQFHPSGNYAYIVVVN---QHYILRSDYDW 301 (430)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETT---TTEEEEEEEET
T ss_pred CCCCcceeEEEcCCCCEEEEEECC---CCEEEEEeCCc
Confidence 11 11222489999988876543 45788887764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0015 Score=69.97 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=76.8
Q ss_pred EEEeeEEeCCC-CcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 142 TALKLYAFSDN-GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 142 ~~~~~~~~SPD-G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
..+..++|+|+ ++.||-... + ..|++||+.++..+..... ...+..++|||||+.|+....+.
T Consensus 150 ~~V~~v~~~p~~~~~las~s~-D----g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg---------- 214 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLA-D----GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG---------- 214 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEET-T----SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS----------
T ss_pred CceEEEEECCCCCCEEEEEEC-C----CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC----------
Confidence 45889999998 677765443 3 3599999998854322221 22346899999999988776432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecC-----CCCeeEEEEEEecCCcEEEEEEecCCC---CceEEEEeCCC
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFP-----NGRSLGLHSEVTDCGRYLLVSTSNNTQ---GSDLHYFDLHS 284 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~i~~~d~~~ 284 (734)
.|+++++. +. ....+..+ ++......+.|++++.+++......+. ...++++++..
T Consensus 215 ------~v~iwd~~-~~--~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 215 ------TVVQYLPT-LQ--EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp ------CEEEECTT-CC--EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred ------cEEEEccC-Cc--ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 57778776 21 11122111 122366789999999998766544321 24688888876
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.022 Score=55.29 Aligned_cols=192 Identities=16% Similarity=0.205 Sum_probs=107.1
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++.++ || .|..+....| ...|.++|+++|+.+....-.....+..-+++|++||...- .
T Consensus 45 tqGL~~~-~~-~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw---------------~ 105 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNG--RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW---------------K 105 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETT--EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES---------------S
T ss_pred cceEEEE-CC-EEEEECCCCC--CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe---------------e
Confidence 4577888 65 5655554443 37899999999997543322222234446678888876642 2
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec--
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-- 301 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-- 301 (734)
...+++++..+.... .-+.-+. .+...++||+.|+.+. + .+.|+.+|.++.. ....+..
T Consensus 106 ~~~v~v~D~~t~~~~--~ti~~~~-----eG~glt~dg~~L~~Sd--G--s~~i~~iDp~T~~--------v~~~I~V~~ 166 (262)
T 3nol_A 106 NGLGFVWNIRNLRQV--RSFNYDG-----EGWGLTHNDQYLIMSD--G--TPVLRFLDPESLT--------PVRTITVTA 166 (262)
T ss_dssp SSEEEEEETTTCCEE--EEEECSS-----CCCCEEECSSCEEECC--S--SSEEEEECTTTCS--------EEEEEECEE
T ss_pred CCEEEEEECccCcEE--EEEECCC-----CceEEecCCCEEEEEC--C--CCeEEEEcCCCCe--------EEEEEEecc
Confidence 347999998876422 2222221 1245678999887642 2 3689999998831 1111111
Q ss_pred -ccc-ceE-EE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecC-----------CCCceeEEEEEeeC-CE
Q psy4818 302 -GMD-HHH-EI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-----------DENRTLDVVAAVAN-NK 365 (734)
Q Consensus 302 -~~~-~~~-~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~-~~ 365 (734)
+.. ... .. |. +| +||..... ...|+++|.++++ +...+.- ....++.++.+..+ ++
T Consensus 167 ~g~~~~~lNELe~~-~G-~lyan~w~---~~~I~vIDp~tG~---V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 167 HGEELPELNELEWV-DG-EIFANVWQ---TNKIVRIDPETGK---VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp TTEECCCEEEEEEE-TT-EEEEEETT---SSEEEEECTTTCB---EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred CCccccccceeEEE-CC-EEEEEEcc---CCeEEEEECCCCc---EEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 111 111 11 43 44 67754433 3469999998876 2222221 11346677766543 45
Q ss_pred EEEEEEeCCceeEEEEEC
Q psy4818 366 LIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 366 l~~~~~~~~~~~l~~~dl 383 (734)
++++. . .-+.+|.+.+
T Consensus 239 lfVTG-K-~Wp~~~ev~~ 254 (262)
T 3nol_A 239 LFVTG-K-LWPKVFEITL 254 (262)
T ss_dssp EEEEE-T-TCSEEEEEEE
T ss_pred EEEEC-C-CCCceEEEEE
Confidence 55543 2 2356666544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.037 Score=55.03 Aligned_cols=233 Identities=10% Similarity=0.009 Sum_probs=123.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc--ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK--NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~--~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
..++.+++||+ |.++.... ..|.++|.. ++....... .....++++++||+ |+++..
T Consensus 22 p~~i~~d~~g~-l~v~~~~~----~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-------------- 80 (300)
T 2qc5_A 22 PYGITSSEDGK-VWFTQHKA----NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTEN-------------- 80 (300)
T ss_dssp EEEEEECTTSC-EEEEETTT----TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEET--------------
T ss_pred cceeeECCCCC-EEEEcCCC----CeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEec--------------
Confidence 56788999998 33333222 368889987 654321111 12235778888885 555432
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
....|++++.. +. ...+..+.......++.++++|+.. +... ....|+.++.++ .... ..+..
T Consensus 81 -~~~~v~~~d~~-g~---~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~---~~~~i~~~~~~g-~~~~-------~~~~~ 143 (300)
T 2qc5_A 81 -GANKIGKLSKK-GG---FTEYPLPQPDSGPYGITEGLNGDIW-FTQL---NGDRIGKLTADG-TIYE-------YDLPN 143 (300)
T ss_dssp -TTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECSTTCEE-EEET---TTTEEEEECTTS-CEEE-------EECSS
T ss_pred -CCCeEEEECCC-CC---eEEecCCCCCCCCccceECCCCCEE-EEcc---CCCeEEEECCCC-CEEE-------ccCCC
Confidence 12367777765 22 1223322222345678889999743 3321 225788888763 2110 00111
Q ss_pred cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 302 GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 302 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
....... .++++|+ +|+.... ...|++++.+ +. +..+...........+....++.+++.... ...|++
T Consensus 144 ~~~~~~~i~~d~~g~-l~v~~~~---~~~i~~~~~~-g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--~~~i~~ 213 (300)
T 2qc5_A 144 KGSYPAFITLGSDNA-LWFTENQ---NNSIGRITNT-GK---LEEYPLPTNAAAPVGITSGNDGALWFVEIM--GNKIGR 213 (300)
T ss_dssp TTCCEEEEEECTTSS-EEEEETT---TTEEEEECTT-CC---EEEEECSSTTCCEEEEEECTTSSEEEEETT--TTEEEE
T ss_pred CCCCceeEEECCCCC-EEEEecC---CCeEEEECCC-Cc---EEEeeCCCCCCCcceEEECCCCCEEEEccC--CCEEEE
Confidence 1111122 2667776 6665542 3469999983 33 233322221233445555544677765533 247999
Q ss_pred EECCCCceeee-eCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHS-FPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~-l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++. +|+.... +......+.++..++++. +++.... ...++++|.
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~---~~~i~~~~~ 258 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWG---ANQIGRITN 258 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETT---TTEEEEECT
T ss_pred EcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccC---CCeEEEECC
Confidence 998 6765332 222233455677777764 6665432 347899987
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.016 Score=55.69 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=114.1
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.++.|++ ..||.+.-. .....|..+++.++.... -...+... + +...+++|+.|+....
T Consensus 24 qGL~~~~--~~LyestG~-------------~g~S~v~~vD~~tgkv~~--~~~l~~~~-f--geGi~~~~~~ly~ltw- 82 (243)
T 3mbr_X 24 EGLFYLR--GHLYESTGE-------------TGRSSVRKVDLETGRILQ--RAEVPPPY-F--GAGIVAWRDRLIQLTW- 82 (243)
T ss_dssp EEEEEET--TEEEEEECC-------------TTSCEEEEEETTTCCEEE--EEECCTTC-C--EEEEEEETTEEEEEES-
T ss_pred ccEEEEC--CEEEEECCC-------------CCCceEEEEECCCCCEEE--EEeCCCCc-c--eeEEEEeCCEEEEEEe-
Confidence 4678864 466655431 224579999998875321 12222221 2 3455667888876643
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED 350 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 350 (734)
..+.++++|.+++ ....-+.-...++. +++|+++||+ ++ + ..+|+.+|.++.+...-..+....
T Consensus 83 --~~~~v~v~D~~tl---------~~~~ti~~~~~Gwg-lt~dg~~L~v-Sd--g-s~~l~~iDp~t~~~~~~I~V~~~g 146 (243)
T 3mbr_X 83 --RNHEGFVYDLATL---------TPRARFRYPGEGWA-LTSDDSHLYM-SD--G-TAVIRKLDPDTLQQVGSIKVTAGG 146 (243)
T ss_dssp --SSSEEEEEETTTT---------EEEEEEECSSCCCE-EEECSSCEEE-EC--S-SSEEEEECTTTCCEEEEEECEETT
T ss_pred --eCCEEEEEECCcC---------cEEEEEeCCCCceE-EeeCCCEEEE-EC--C-CCeEEEEeCCCCeEEEEEEEccCC
Confidence 2378999999882 11111211122333 5688887775 45 2 456999999875421001121111
Q ss_pred -CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-------------CceEEeeccCcccceEEEEEe
Q psy4818 351 -ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-------------LGQITHISGRRKYNEVFYGFT 416 (734)
Q Consensus 351 -~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-------------~g~v~~~~~~~d~~~l~~~~s 416 (734)
+-..+..+.+.+ +.+++..- ....|.++|+++|+.+..|... .....+++.++++++++++.-
T Consensus 147 ~~~~~lNeLe~~~-G~lyanvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 147 RPLDNLNELEWVN-GELLANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECCCEEEEEEET-TEEEEEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cccccceeeEEeC-CEEEEEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 112233344454 77775542 2358999999999987776522 124467888888888888766
Q ss_pred cCCCCceEEEEeC
Q psy4818 417 SFLQPGTIYHCNI 429 (734)
Q Consensus 417 s~~~P~~~~~~d~ 429 (734)
-+ +.+|.+.+
T Consensus 224 ~w---p~~~~v~~ 233 (243)
T 3mbr_X 224 RW---PMLYEIRL 233 (243)
T ss_dssp TC---SEEEEEEE
T ss_pred CC---CcEEEEEE
Confidence 55 46787776
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0069 Score=59.06 Aligned_cols=203 Identities=13% Similarity=0.122 Sum_probs=110.4
Q ss_pred cCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 190 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 190 ~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
.++++|.||+++||.+.+. +.+|+..++. +.......+.. ..-..++++.++|++++ . .
T Consensus 29 lSGla~~~~~~~L~aV~d~---------------~~~I~~ld~~-g~v~~~i~l~g---~~D~EGIa~~~~g~~~v-s-~ 87 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINK---------------PAAIVEMTTN-GDLIRTIPLDF---VKDLETIEYIGDNQFVI-S-D 87 (255)
T ss_dssp EEEEEEETTTTEEEEEEET---------------TEEEEEEETT-CCEEEEEECSS---CSSEEEEEECSTTEEEE-E-E
T ss_pred cceeEEeCCCCEEEEEECC---------------CCeEEEEeCC-CCEEEEEecCC---CCChHHeEEeCCCEEEE-E-E
Confidence 4799999999988887753 3478888876 32111111111 12346788999997543 2 2
Q ss_pred cCCCCceEEEEeCCCCCCCcccCCCCceee-eccccceEE--EEEecCCeEEEEeCCCCCCceEEEEec--CCCCCCCce
Q psy4818 270 NNTQGSDLHYFDLHSLPDGKISGKFPLKTV-IPGMDHHHE--IIANNGPELIVKTTKNAPKGKVVTINL--NNPCEKNWK 344 (734)
Q Consensus 270 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l-~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~--~~~~~~~~~ 344 (734)
+. ...++++++.....-........ .+ ....+.+.. .|++++++||+...+. ...||.++- .+. ..+
T Consensus 88 E~--~~~l~~~~v~~~~~i~~~~~~~~-~~~~~~~N~g~EGLA~d~~~~~L~va~E~~--p~~i~~~~g~~~~~---~l~ 159 (255)
T 3qqz_A 88 ER--DYAIYVISLTPNSEVKILKKIKI-PLQESPTNCGFEGLAYSRQDHTFWFFKEKN--PIEVYKVNGLLSSN---ELH 159 (255)
T ss_dssp TT--TTEEEEEEECTTCCEEEEEEEEC-CCSSCCCSSCCEEEEEETTTTEEEEEEESS--SEEEEEEESTTCSS---CCE
T ss_pred CC--CCcEEEEEcCCCCeeeeeeeecc-ccccccccCCcceEEEeCCCCEEEEEECcC--CceEEEEcccccCC---cee
Confidence 22 26788888766211000000000 00 011122223 3889999999877653 346888881 111 122
Q ss_pred Eee-----cCCCCceeEEEEEee-CCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCc---------eEEeeccCcccc
Q psy4818 345 TLI-----PEDENRTLDVVAAVA-NNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLG---------QITHISGRRKYN 409 (734)
Q Consensus 345 ~l~-----~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g---------~v~~~~~~~d~~ 409 (734)
.+- ....-..++++.... .+++++..... ..|..+|+ +|+.+..+.+..+ ...+++++++++
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s--~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES--RALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT--TEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eecchhhccccccCCceeEEEcCCCCeEEEEECCC--CeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 210 001111234444332 35677765433 67888998 6776555544321 346788888874
Q ss_pred eEEEEEecCCCCceEEEEeC
Q psy4818 410 EVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 410 ~l~~~~ss~~~P~~~~~~d~ 429 (734)
+|++ + .|..+|++..
T Consensus 237 -lyIv-s---E~n~~y~f~~ 251 (255)
T 3qqz_A 237 -IYIV-S---EPNRFYRFTP 251 (255)
T ss_dssp -EEEE-E---TTTEEEEEEC
T ss_pred -EEEE-c---CCceEEEEEe
Confidence 7776 3 3558898865
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.099 Score=50.16 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=107.5
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++.|++ ..|..+....|. ..|.++|+++|+.+....-.....+..-++++++||-..- .
T Consensus 23 tqGL~~~~--~~LyestG~~g~--S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw---------------~ 83 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGR--SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW---------------R 83 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTS--CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES---------------S
T ss_pred cccEEEEC--CEEEEECCCCCC--ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe---------------e
Confidence 45777875 456655544443 6899999999997653322222234455677888877642 2
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
...+++++..+.... .-+..+.+ +...++||+.|+++. + .+.|+++|.++.. ....+.-..
T Consensus 84 ~~~v~v~D~~tl~~~--~ti~~~~~-----Gwglt~dg~~L~vSd--g--s~~l~~iDp~t~~--------~~~~I~V~~ 144 (243)
T 3mbr_X 84 NHEGFVYDLATLTPR--ARFRYPGE-----GWALTSDDSHLYMSD--G--TAVIRKLDPDTLQ--------QVGSIKVTA 144 (243)
T ss_dssp SSEEEEEETTTTEEE--EEEECSSC-----CCEEEECSSCEEEEC--S--SSEEEEECTTTCC--------EEEEEECEE
T ss_pred CCEEEEEECCcCcEE--EEEeCCCC-----ceEEeeCCCEEEEEC--C--CCeEEEEeCCCCe--------EEEEEEEcc
Confidence 347999998775421 22222221 245568999887642 2 3689999998831 111111111
Q ss_pred ---c-ceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceE---eec------CCCCceeEEEEEee-CCEEEEE
Q psy4818 304 ---D-HHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKT---LIP------EDENRTLDVVAAVA-NNKLIVH 369 (734)
Q Consensus 304 ---~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---l~~------~~~~~~~~~~~~~~-~~~l~~~ 369 (734)
. ....-....+.++|..... ...|.++|.++++-..+.. +.+ .....++.++.+.. +++++++
T Consensus 145 ~g~~~~~lNeLe~~~G~lyanvw~---s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 145 GGRPLDNLNELEWVNGELLANVWL---TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp TTEECCCEEEEEEETTEEEEEETT---TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred CCcccccceeeEEeCCEEEEEECC---CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 1 0111122234567754432 2369999998876211111 111 11235677777664 3566655
Q ss_pred EEeCCceeEEEEEC
Q psy4818 370 YIQNVRSVMDLHDL 383 (734)
Q Consensus 370 ~~~~~~~~l~~~dl 383 (734)
. . --+.+|.+.+
T Consensus 222 G-K-~wp~~~~v~~ 233 (243)
T 3mbr_X 222 G-K-RWPMLYEIRL 233 (243)
T ss_dssp E-T-TCSEEEEEEE
T ss_pred C-C-CCCcEEEEEE
Confidence 4 2 2366776655
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0084 Score=59.66 Aligned_cols=213 Identities=13% Similarity=0.074 Sum_probs=107.6
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc--ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK--NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~--~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
...+.++|||+.|+ + . . ..|+.+|. +|+.+..... .....+..++|||+.|+-...+
T Consensus 39 ~~~~~~~pdG~ilv-s-~-~----~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~------------- 97 (276)
T 3no2_A 39 CNSVAATKAGEILF-S-Y-S----KGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH------------- 97 (276)
T ss_dssp CCEEEECTTSCEEE-E-C-B----SEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST-------------
T ss_pred CcCeEECCCCCEEE-e-C-C----CCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC-------------
Confidence 35678999999777 2 1 1 35899998 6775432221 1223567889999876544320
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecC----CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFP----NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
..+|+.++.... .+.-+... ........+..++||++|+.. .....|+.+|.++ + .-|.
T Consensus 98 --~~~v~~vd~~Gk---~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~----~~~~~v~~~d~~G-~-------~~w~ 160 (276)
T 3no2_A 98 --PSTILEVNMKGE---VLSKTEFETGIERPHAQFRQINKNKKGNYLVPL----FATSEVREIAPNG-Q-------LLNS 160 (276)
T ss_dssp --TEEEEEECTTSC---EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE----TTTTEEEEECTTS-C-------EEEE
T ss_pred --CCEEEEEeCCCC---EEEEEeccCCCCcccccccCceECCCCCEEEEe----cCCCEEEEECCCC-C-------EEEE
Confidence 113444433211 11011100 000011245778999987632 2236899999874 2 1222
Q ss_pred eeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCC---ceeEEEEEeeCCEEEEEEEeC-
Q psy4818 298 TVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDEN---RTLDVVAAVANNKLIVHYIQN- 373 (734)
Q Consensus 298 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~~~- 373 (734)
.-.. .........++|+.++ .... +.+|+.+|.++++. .|+.-....+. .....+....++.+++.....
T Consensus 161 ~~~~-~~~~~~~~~~~g~~~v-~~~~---~~~v~~~d~~tG~~-~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~ 234 (276)
T 3no2_A 161 VKLS-GTPFSSAFLDNGDCLV-ACGD---AHCFVQLNLESNRI-VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH 234 (276)
T ss_dssp EECS-SCCCEEEECTTSCEEE-ECBT---TSEEEEECTTTCCE-EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred EECC-CCccceeEcCCCCEEE-EeCC---CCeEEEEeCcCCcE-EEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence 1111 1111123566776544 3322 35799999986651 12221111111 113344444456777766432
Q ss_pred -------CceeEEEEECCCCceeeeeCCC--CceEEe
Q psy4818 374 -------VRSVMDLHDLNTGKRLHSFPLD--LGQITH 401 (734)
Q Consensus 374 -------~~~~l~~~dl~~g~~~~~l~~~--~g~v~~ 401 (734)
+..+++-++. +|+.+-.+... .+.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~-~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 235 DREAGKGKHPQLVEIDS-EGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp CTTGGGSCCCSEEEECT-TSBEEEEECCTTTSCCCCE
T ss_pred cccccccCCceEEEECC-CCCEEEEecCcccccceee
Confidence 2346777776 78876555432 344433
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.14 Score=50.63 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=121.6
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
.+.++.++|||+. .++.... ..|+++|.+ |+...... ......+++++|||+ |+++...
T Consensus 58 ~~~~i~~~~~g~l-~v~~~~~----~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~------------ 118 (299)
T 2z2n_A 58 KVMCLTISSDGEV-WFTENAA----NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEMN------------ 118 (299)
T ss_dssp CEEEEEECTTSCE-EEEETTT----TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETT------------
T ss_pred ceeeEEECCCCCE-EEeCCCC----CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCC-EEEEecC------------
Confidence 3667899999984 3333222 258888876 44221111 112235778888884 5554421
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee-
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV- 299 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l- 299 (734)
...|++++. ++. ...+..+.......++.+++||+. ++... ....|+++|. ++. ....
T Consensus 119 ---~~~i~~~d~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~---~~~~i~~~~~-~g~---------~~~~~ 177 (299)
T 2z2n_A 119 ---GNRIGRITD-DGK---IREYELPNKGSYPSFITLGSDNAL-WFTEN---QNNAIGRITE-SGD---------ITEFK 177 (299)
T ss_dssp ---TTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSCE-EEEET---TTTEEEEECT-TCC---------EEEEE
T ss_pred ---CceEEEECC-CCC---EEEecCCCCCCCCceEEEcCCCCE-EEEeC---CCCEEEEEcC-CCc---------EEEee
Confidence 236777776 322 122222222224567889999964 33321 2258999998 422 1111
Q ss_pred -eccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 300 -IPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 300 -~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
......... .++++|. +|+.... ...|++++. ++. +..+........+..+....++.+++.... ...
T Consensus 178 ~~~~~~~~~~i~~~~~g~-l~v~~~~---~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~ 247 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDDA-LWFVEII---GNKIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWG--ANK 247 (299)
T ss_dssp CSSTTCCEEEEEECTTSS-EEEEETT---TTEEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETT--TTE
T ss_pred CCCCCCcceeEEECCCCC-EEEEccC---CceEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccC--Cce
Confidence 111111122 2666665 6665543 346999998 444 333322222233445555544677665422 357
Q ss_pred EEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|++++. +|+. ..+..+ ...+.++.. ++ +.+++..+ ...++++++
T Consensus 248 i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~-g~l~v~~~----~~~l~~~~~ 293 (299)
T 2z2n_A 248 IGRLTS-NNII-EEYPIQIKSAEPHGICF-DG-ETIWFAME----CDKIGKLTL 293 (299)
T ss_dssp EEEEET-TTEE-EEEECSSSSCCEEEEEE-CS-SCEEEEET----TTEEEEEEE
T ss_pred EEEECC-CCce-EEEeCCCCCCccceEEe-cC-CCEEEEec----CCcEEEEEc
Confidence 999998 6754 444322 234555665 44 45776643 247888887
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.042 Score=58.49 Aligned_cols=158 Identities=8% Similarity=0.043 Sum_probs=84.7
Q ss_pred EeeEEeCCC--CcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 144 LKLYAFSDN--GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 144 ~~~~~~SPD--G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
-.+++|+|| +..| |..+.. ..|+++|+++|+............+++|++||+ ||++.... .
T Consensus 141 P~gvavd~~s~~g~L-yv~D~~----~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~-----------~ 203 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDL-YWVGQR----DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQS-----------S 203 (433)
T ss_dssp CCEEEECTTTTTCEE-EEECBT----SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCS-----------C
T ss_pred CceEEEccccCCCEE-EEEeCC----CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCC-----------C
Confidence 457899995 4444 445443 469999998887543222222246899999999 65554211 0
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
.....++............ .......+ .+++++|++..|++.. .....|+.++.+++.. ...+..
T Consensus 204 ~~~~gv~~~~~~~~~~~~~-~~~~~~~P---~giavd~~~G~lyv~d---~~~~~V~~~d~~~g~~--------~~~~~~ 268 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFTERL-SLCNARGA---KTCAVHPQNGKIYYTR---YHHAMISSYDPATGTL--------TEEEVM 268 (433)
T ss_dssp TTSEEEEEECGGGTTCCEE-EEEECSSB---CCCEECTTTCCEEECB---TTCSEEEEECTTTCCE--------EEEEEE
T ss_pred cccceEEEEECCCCeeccc-cccccCCC---CEEEEeCCCCeEEEEE---CCCCEEEEEECCCCeE--------EEEEec
Confidence 0112344443332221111 11111112 3578899555566543 2236899999886321 011111
Q ss_pred --cccceE-EEEEecCCeEEEEeCCCCCCceEEEEecC
Q psy4818 302 --GMDHHH-EIIANNGPELIVKTTKNAPKGKVVTINLN 336 (734)
Q Consensus 302 --~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 336 (734)
...... -.++|+|++||+.-.. +.+|++++.+
T Consensus 269 ~~~~~~~~~ia~dpdG~~LYvad~~---~~~I~~~~~d 303 (433)
T 4hw6_A 269 MDTKGSNFHIVWHPTGDWAYIIYNG---KHCIYRVDYN 303 (433)
T ss_dssp CSCCSSCEEEEECTTSSEEEEEETT---TTEEEEEEBC
T ss_pred cCCCCCcccEEEeCCCCEEEEEeCC---CCEEEEEeCC
Confidence 111111 2389999988876432 4579998876
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00088 Score=69.60 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=67.5
Q ss_pred ecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee---eecccc-ceE--EEEEecCCeEEEEeCCC-C----C
Q psy4818 258 TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT---VIPGMD-HHH--EIIANNGPELIVKTTKN-A----P 326 (734)
Q Consensus 258 SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~---l~~~~~-~~~--~~~s~dg~~l~~~s~~~-~----~ 326 (734)
+++++.+++... +.++.+|+.++ ...+........ ...+.. .+. -.+++||+++|+..... + .
T Consensus 219 ~~~~~~~~~vs~-----~~V~viD~~~~-~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 219 ANYPGMLVWAVA-----SSILQGDIPAA-GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ETTTTEEEECBS-----SCCEEEECCSS-CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred cccCCEEEEEcC-----CEEEEEECCCC-cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 888888777653 57899998762 111111011000 000000 110 23899999999865411 1 0
Q ss_pred CceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC-CEEEEEEEeCCceeEEEEECCCCceeeeeCCC
Q psy4818 327 KGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN-NKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD 395 (734)
Q Consensus 327 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~ 395 (734)
...+.++|+++.+ ...-++-. .....+.+..+ +++++... .+...|.++|+++++.++.|...
T Consensus 293 ~~~~~ViD~~t~~---vv~~i~vg--~~p~gi~~s~Dg~~l~va~~-~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 293 AENTSSVTASVGQ---TSGPISNG--HDSDAIIAAQDGASDNYANS-AGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEEEEESSSCC---EEECCEEE--EEECEEEECCSSSCEEEEEE-TTTTEEEEEESSSCEEEEECCCC
T ss_pred CCCEEEEECCCCe---EEEEEECC--CCcceEEECCCCCEEEEEcc-CCCCeEEEEECCCCcEEEEEECC
Confidence 1235699998764 22222211 11233444443 45666554 12368999999999988888644
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.089 Score=52.08 Aligned_cols=196 Identities=9% Similarity=0.062 Sum_probs=101.7
Q ss_pred EEeeEEe-CCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-cc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 143 ALKLYAF-SDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 143 ~~~~~~~-SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
...++++ +++|+.+ ++ +..+ ...|+++| .+|+.+... .. ......++++|||+ |+++..
T Consensus 78 ~p~~i~~~~~~g~l~-v~-~~~~--~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------------ 139 (286)
T 1q7f_A 78 YPNRVAVVRNSGDII-VT-ERSP--THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC------------ 139 (286)
T ss_dssp SEEEEEEETTTTEEE-EE-ECGG--GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEET------------
T ss_pred CceEEEEEcCCCeEE-EE-cCCC--CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEEC------------
Confidence 3567888 5777643 33 3211 24699999 445533211 11 11235788999996 555432
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
....|++++..+. .+..+..........+++++|||+ |++... ....|++++.++ . ....+
T Consensus 140 ---~~~~i~~~~~~g~---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~---~~~~i~~~~~~g-~--------~~~~~ 200 (286)
T 1q7f_A 140 ---KVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDKQE-IFISDN---RAHCVKVFNYEG-Q--------YLRQI 200 (286)
T ss_dssp ---TTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSSSE-EEEEEG---GGTEEEEEETTC-C--------EEEEE
T ss_pred ---CCCEEEEEcCCCC---EEEEeCCCCccCCcEEEEECCCCC-EEEEEC---CCCEEEEEcCCC-C--------EEEEE
Confidence 1236888775432 222232212222456789999998 444322 236899999865 1 11111
Q ss_pred ecc--ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCce
Q psy4818 300 IPG--MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376 (734)
Q Consensus 300 ~~~--~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (734)
... ...... .++++|. +|+....+ +..|.+++.++.. ...+...........+.+..++.++++ ..+ .
T Consensus 201 ~~~g~~~~p~~i~~d~~G~-l~v~~~~~--~~~i~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~--~ 271 (286)
T 1q7f_A 201 GGEGITNYPIGVGINSNGE-ILIADNHN--NFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLA-SKD--Y 271 (286)
T ss_dssp SCTTTSCSEEEEEECTTCC-EEEEECSS--SCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEE-ETT--T
T ss_pred ccCCccCCCcEEEECCCCC-EEEEeCCC--CEEEEEECCCCCE---EEEEcccCCCCcceeEEECCCCcEEEE-CCC--C
Confidence 111 111222 2778874 66554321 2369999975432 233333322222345555555777776 333 5
Q ss_pred eEEEEECC
Q psy4818 377 VMDLHDLN 384 (734)
Q Consensus 377 ~l~~~dl~ 384 (734)
.|.+|++.
T Consensus 272 ~v~v~~~~ 279 (286)
T 1q7f_A 272 RLYIYRYV 279 (286)
T ss_dssp EEEEEECS
T ss_pred eEEEEEcc
Confidence 78888773
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00096 Score=76.02 Aligned_cols=207 Identities=7% Similarity=0.014 Sum_probs=115.4
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC----CCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT----GKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~----g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..++.|++++.+|.|+-... ..|+++++.+ .......... ....++++.+.++.||++..
T Consensus 408 p~gla~d~~~~~Ly~sD~~~----~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~----------- 472 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----------- 472 (699)
T ss_dssp CCCCEEETTTTEEEECCTTT----TSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT-----------
T ss_pred eEEEccccccCeEEEEecCC----CeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec-----------
Confidence 34688999888877654322 2588899876 2221111111 12246777766777776531
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEec-CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEF-PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
...+|++.++.+... ..+... ...+ .+++++|++++|+++... ....|+++++++ ... .
T Consensus 473 ----~~~~I~v~d~dg~~~--~~l~~~~~~~P---~giavDp~~g~ly~td~~--~~~~I~~~~~dG-~~~--------~ 532 (699)
T 1n7d_A 473 ----VLGTVSVADTKGVKR--KTLFREQGSKP---RAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG-VDI--------Y 532 (699)
T ss_dssp ----TTSCEEEEBSSSCCE--EEECCCSSCCC---CCEECCSSSSCCEECCCS--SSCCEEBCCSSS-CCC--------C
T ss_pred ----cCCeEEEEecCCCce--EEEEeCCCCCc---ceEEEccCCCcEEEcccC--CCCeEEEEeCCC-CCe--------e
Confidence 123688887765421 122221 1122 367899998888765421 226899988876 211 1
Q ss_pred eeec-ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCC-CceeEEEEEeeCCEEEEEEEeCC
Q psy4818 298 TVIP-GMD-HHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDE-NRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 298 ~l~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
.++. ... ...-.|++++++||+.-. ...+|+++++++.. .+.++.... .....++.+. ++.+|++. ..
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD~---~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd-~~~lywtd--~~ 603 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTD--II 603 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEET---TTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEE-TTEEEEEC--ST
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEec---CCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEE-CCEEEEEe--CC
Confidence 1211 111 111238888888998653 24679999998654 244443211 1111223333 46777765 33
Q ss_pred ceeEEEEECCCCceeeeeCC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPL 394 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~ 394 (734)
...|.+++..+|+.++.|..
T Consensus 604 ~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 604 NEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp TTCEEEEETTTEEEEECCCT
T ss_pred CCeEEEEEccCCCceEEeec
Confidence 46899999878887666654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.15 Score=56.99 Aligned_cols=224 Identities=11% Similarity=0.120 Sum_probs=127.8
Q ss_pred cEEEEEEeCCCCceEEEEEEECCCCCccc-cccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEE
Q psy4818 154 KHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHV 231 (734)
Q Consensus 154 ~~la~~~~~~g~~~~~l~v~dl~~g~~~~-~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (734)
.+|.|+.. ..|..+|+++..... ....+. ...+++|.+++..||++... ..+|++.+
T Consensus 7 ~~Ll~s~~------~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~---------------~~~I~r~~ 65 (628)
T 4a0p_A 7 AFLLFSRR------ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS---------------LKTISRAF 65 (628)
T ss_dssp CEEEEEET------TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT---------------TTEEEEEE
T ss_pred cEEEEEeC------CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC---------------CCeEEEEE
Confidence 36777632 368999998765311 111111 23588999999888887532 34799988
Q ss_pred CCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-ccccceEE-E
Q psy4818 232 LGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI-PGMDHHHE-I 309 (734)
Q Consensus 232 l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~-~~~~~~~~-~ 309 (734)
+++...+ .+....- ..-.++++.+.++.|+++.. ....|.++++++. . ...++ .....-.. .
T Consensus 66 ~~g~~~~--~v~~~g~--~~P~GlAvD~~~~~LY~tD~---~~~~I~v~~~dG~-~--------~~~l~~~~l~~P~~ia 129 (628)
T 4a0p_A 66 MNGSALE--HVVEFGL--DYPEGMAVDWLGKNLYWADT---GTNRIEVSKLDGQ-H--------RQVLVWKDLDSPRALA 129 (628)
T ss_dssp TTSCSCE--EEECSSC--SCCCEEEEETTTTEEEEEET---TTTEEEEEETTST-T--------CEEEECSSCCCEEEEE
T ss_pred CCCCCcE--EEEeCCC--CCcceEEEEeCCCEEEEEEC---CCCEEEEEecCCC-c--------EEEEEeCCCCCcccEE
Confidence 8765322 2333211 11246888888998887643 3368999999872 1 12233 22222222 2
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEee-CCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVA-NNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
+.|....||+.-. +...+|+++++++.. .+.++... ....++.+.. ++.||++-. ....|+++++ +|..
T Consensus 130 vdp~~G~lY~tD~--g~~~~I~r~~~dG~~---~~~l~~~~--~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~-dG~~ 199 (628)
T 4a0p_A 130 LDPAEGFMYWTEW--GGKPKIDRAAMDGSE---RTTLVPNV--GRANGLTIDYAKRRLYWTDL--DTNLIESSNM-LGLN 199 (628)
T ss_dssp EETTTTEEEEEEC--SSSCEEEEEETTSCS---CEEEECSC--SSEEEEEEETTTTEEEEEET--TTTEEEEEET-TSCS
T ss_pred EccCCCeEEEeCC--CCCCEEEEEeCCCCc---eEEEECCC--CCcceEEEccccCEEEEEEC--CCCEEEEEcC-CCCc
Confidence 6776777887543 225689999998765 35555422 2334555543 477887653 3468999999 4543
Q ss_pred eeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 389 LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 389 ~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+.+........+++.. ++.++++- . .-..|+++|.
T Consensus 200 ~~v~~~~l~~P~glav~--~~~ly~tD--~-~~~~I~~~dk 235 (628)
T 4a0p_A 200 REVIADDLPHPFGLTQY--QDYIYWTD--W-SRRSIERANK 235 (628)
T ss_dssp CEEEEECCSCEEEEEEE--TTEEEEEE--T-TTTEEEEEET
T ss_pred eEEeeccCCCceEEEEE--CCEEEEec--C-CCCEEEEEEC
Confidence 33332211122244433 35566543 2 2347888886
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.12 Score=52.46 Aligned_cols=200 Identities=8% Similarity=0.029 Sum_probs=102.8
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC-ccccccc----------cc-ccCeeEEEcCCcEEEEEEEecC
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK-DYPEVLK----------NV-KFPSISWTHDHKGFFYNQYCDI 210 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~-~~~~~~~----------~~-~~~~~~wSpDg~~l~y~~~~~~ 210 (734)
...+++++|||+ | |..+... ..|+++|.++.. .+. +.. .. ...+++++|++..||++...
T Consensus 92 ~p~gia~d~~g~-l-~v~d~~~---~~v~~~~~~g~~~~~~-~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~-- 163 (329)
T 3fvz_A 92 LPHGLSIDTDGN-Y-WVTDVAL---HQVFKLDPHSKEGPLL-ILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-- 163 (329)
T ss_dssp SEEEEEECTTSC-E-EEEETTT---TEEEEECTTCSSCCSE-EESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS--
T ss_pred CceEEEECCCCC-E-EEEECCC---CEEEEEeCCCCeEEEE-EecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC--
Confidence 356789999999 3 3444322 369999987653 221 111 00 23578999954456655421
Q ss_pred CCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCC--------CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeC
Q psy4818 211 NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPN--------GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDL 282 (734)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~--------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~ 282 (734)
...+|++++.... .+..+.... ......+++++||+..|++... ....|.+++.
T Consensus 164 ------------~~~~I~~~~~~g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~ 225 (329)
T 3fvz_A 164 ------------CNSRIVQFSPSGK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKT 225 (329)
T ss_dssp ------------SCCEEEEECTTSC---EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEET
T ss_pred ------------CCCeEEEEcCCCC---EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEEC
Confidence 1236777764321 112221110 0012467899999777766542 2368999999
Q ss_pred CCCCCCcccCCCCceeeec-cc-cceEEE-EEecCCeEEEEeCC----CCCCceEEEEecCCCCCCCceEeecC--CCCc
Q psy4818 283 HSLPDGKISGKFPLKTVIP-GM-DHHHEI-IANNGPELIVKTTK----NAPKGKVVTINLNNPCEKNWKTLIPE--DENR 353 (734)
Q Consensus 283 ~~~~~~~l~~~~~~~~l~~-~~-~~~~~~-~s~dg~~l~~~s~~----~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~ 353 (734)
++|. ....+.. .. ...+.. ++| ..++..... +....+++++++.++. +...+.. ....
T Consensus 226 ~~G~--------~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~---~~~~~~~~~~~~~ 292 (329)
T 3fvz_A 226 DTKE--------FVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGE---IIDVFKPVRKHFD 292 (329)
T ss_dssp TTCC--------EEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCC---EEEEECCSSSCCS
T ss_pred CCCc--------EEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCe---EEEEEcCCCCccC
Confidence 8532 1111111 11 111222 555 222222111 1224479999987765 3333321 1123
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
....+.+..++.+|++...+ ..|++|++
T Consensus 293 ~p~~ia~~~dG~lyvad~~~--~~I~~~~~ 320 (329)
T 3fvz_A 293 MPHDIVASEDGTVYIGDAHT--NTVWKFTL 320 (329)
T ss_dssp SEEEEEECTTSEEEEEESSS--CCEEEEEE
T ss_pred CeeEEEECCCCCEEEEECCC--CEEEEEeC
Confidence 34455555556777665433 57888887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.21 Score=49.39 Aligned_cols=229 Identities=13% Similarity=0.067 Sum_probs=121.2
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
...++.+++||+ |.++ +..+ ..|+++|.. |+...... .......++++++|+ |+++...
T Consensus 63 ~~~~i~~~~~g~-l~v~-~~~~---~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~------------ 123 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFT-ENGA---NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLN------------ 123 (300)
T ss_dssp CEEEEEECTTSC-EEEE-ETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEETT------------
T ss_pred cceeEEECCCCC-EEEE-ecCC---CeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEccC------------
Confidence 367788999997 3333 3221 358899988 65432211 112235778888885 5554321
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
...|++++.. +. ...+..+.......++.++++|+ |++... ....|++++..+ . .....
T Consensus 124 ---~~~i~~~~~~-g~---~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~---~~~~i~~~~~~g-~---------~~~~~ 182 (300)
T 2qc5_A 124 ---GDRIGKLTAD-GT---IYEYDLPNKGSYPAFITLGSDNA-LWFTEN---QNNSIGRITNTG-K---------LEEYP 182 (300)
T ss_dssp ---TTEEEEECTT-SC---EEEEECSSTTCCEEEEEECTTSS-EEEEET---TTTEEEEECTTC-C---------EEEEE
T ss_pred ---CCeEEEECCC-CC---EEEccCCCCCCCceeEEECCCCC-EEEEec---CCCeEEEECCCC-c---------EEEee
Confidence 2267777665 21 12222222223456788999999 444332 225799998843 1 11111
Q ss_pred --ccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 301 --PGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 301 --~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
........ .++++| .+|+.... ...|++++.+ +. +..............+....++.+++... +...
T Consensus 183 ~~~~~~~~~~i~~d~~g-~l~v~~~~---~~~i~~~~~~-g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~--~~~~ 252 (300)
T 2qc5_A 183 LPTNAAAPVGITSGNDG-ALWFVEIM---GNKIGRITTT-GE---ISEYDIPTPNARPHAITAGKNSEIWFTEW--GANQ 252 (300)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETT---TTEEEEECTT-CC---EEEEECSSTTCCEEEEEECSTTCEEEEET--TTTE
T ss_pred CCCCCCCcceEEECCCC-CEEEEccC---CCEEEEEcCC-Cc---EEEEECCCCCCCceEEEECCCCCEEEecc--CCCe
Confidence 11111122 256665 57765543 3469999983 33 23332221123344555554467776653 2357
Q ss_pred EEEEECCCCceeeeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|++++. +|+. ..+..+ ...+.++..++++ .+++... . .++++|+
T Consensus 253 i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~---~--~i~~~~p 298 (300)
T 2qc5_A 253 IGRITN-DNTI-QEYQLQTENAEPHGITFGKDG-SVWFALK---C--KIGKLNL 298 (300)
T ss_dssp EEEECT-TSCE-EEEECCSTTCCCCCEEECTTS-CEEEECS---S--EEEEEEE
T ss_pred EEEECC-CCcE-EEEECCccCCccceeEeCCCC-CEEEEcc---C--ceEEeCC
Confidence 999998 6764 333222 2334456666665 4665432 2 6888876
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.2 Score=53.12 Aligned_cols=152 Identities=9% Similarity=0.127 Sum_probs=87.1
Q ss_pred CCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC
Q psy4818 100 ENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179 (734)
Q Consensus 100 g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~ 179 (734)
++.+|+.-.. ..|++.+..++....+... .....+++|++||++|.++-..++.....+++++.+++.
T Consensus 149 ~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~-------~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 149 HNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSG-------LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp EEEEEEEEBT-----EEEEEEETTTTEEEEEECC-------CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCeEEEEeCC-----CcEEEEECCCCEEEEEecC-------CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 4566655432 4566666544444444431 122568999999997766655444434566777755432
Q ss_pred cccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEe
Q psy4818 180 DYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVT 258 (734)
Q Consensus 180 ~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S 258 (734)
...... ......+++++|++..||++.. ...+|++++.++... ..++..... .+-.+++++
T Consensus 217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~---------------~~~~V~~~~~~~~~~--~~~~~~~~~-~~P~gia~~ 278 (430)
T 3tc9_A 217 KVITELTKGQNCNGAETHPINGELYFNSW---------------NAGQVFRYDFTTQET--TPLFTIQDS-GWEFHIQFH 278 (430)
T ss_dssp CSEEEEEECSSCCCEEECTTTCCEEEEET---------------TTTEEEEEETTTTEE--EEEEECSSS-SCCEEEEEC
T ss_pred eeeeeeccCCCceEEEEeCCCCEEEEEEC---------------CCCEEEEEECCCCcE--EEEEEcCCC-CcceeEEEc
Confidence 211111 1112367889996556776653 234799998875431 123333221 233578999
Q ss_pred cCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 259 DCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 259 pDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
|||++|++... ....|+.++.+.
T Consensus 279 pdG~~lyv~d~---~~~~I~~~~~d~ 301 (430)
T 3tc9_A 279 PSGNYAYIVVV---NQHYILRSDYDW 301 (430)
T ss_dssp TTSSEEEEEET---TTTEEEEEEEET
T ss_pred CCCCEEEEEEC---CCCEEEEEeCCc
Confidence 99998887642 236888887654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.097 Score=52.40 Aligned_cols=238 Identities=9% Similarity=-0.042 Sum_probs=114.6
Q ss_pred eEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCC---CCCeeE
Q psy4818 167 WNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQ---DKDIPV 242 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~---~~~~~v 242 (734)
..+++++|+.+++..... ....+.......-+++-++|..... ......+++.++.+.. .+. +
T Consensus 30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~-----------~~~~~~~~~~d~~~~~~~~W~~--~ 96 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG-----------RSRLSSVECLDYTADEDGVWYS--V 96 (301)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS-----------SCBCCCEEEEETTCCTTCCCEE--E
T ss_pred eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCC-----------CccCceEEEEECCCCCCCeeEE--C
Confidence 357899999887632211 1111212233345554333332211 1223468888887765 321 1
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEecCCC--CceEEEEeCCCCCCCcccCCCCceeeecc--ccceEEEEEecCCeEE
Q psy4818 243 VEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ--GSDLHYFDLHSLPDGKISGKFPLKTVIPG--MDHHHEIIANNGPELI 318 (734)
Q Consensus 243 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~l~~~--~~~~~~~~s~dg~~l~ 318 (734)
-..+. +..... ...-+++ |++....... .++++++|+.+. .|..+..- .......... +++||
T Consensus 97 ~~~p~-~r~~~~-~~~~~~~-lyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~~~~~~~-~~~iy 163 (301)
T 2vpj_A 97 APMNV-RRGLAG-ATTLGDM-IYVSGGFDGSRRHTSMERYDPNID---------QWSMLGDMQTAREGAGLVVA-SGVIY 163 (301)
T ss_dssp CCCSS-CCBSCE-EEEETTE-EEEECCBCSSCBCCEEEEEETTTT---------EEEEEEECSSCCBSCEEEEE-TTEEE
T ss_pred CCCCC-Ccccee-EEEECCE-EEEEcccCCCcccceEEEEcCCCC---------eEEECCCCCCCcccceEEEE-CCEEE
Confidence 11111 111111 2223555 4444332222 278999999872 34443211 1112222333 45687
Q ss_pred EEeCCCC--CCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC---ceeEEEEECCCCceeeeeC
Q psy4818 319 VKTTKNA--PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV---RSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 319 ~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~l~~~dl~~g~~~~~l~ 393 (734)
+....++ ....++.+|+.+.. |+.+.+.........+... +++|++....++ ...++.+|+.+++. +.+.
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~ 238 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGH---WTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVT 238 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTE---EEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE-EEEC
T ss_pred EECCCCCCcccceEEEEeCCCCc---EEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcE-EECC
Confidence 7754332 24569999998765 8776432211111122233 478887765443 35799999987775 3332
Q ss_pred -CC--CceEEeeccCcccceEEEEEecCC--CCceEEEEeCCCCcCCCCCCceeEEe
Q psy4818 394 -LD--LGQITHISGRRKYNEVFYGFTSFL--QPGTIYHCNIPENITDQDDFKPTIFR 445 (734)
Q Consensus 394 -~~--~g~v~~~~~~~d~~~l~~~~ss~~--~P~~~~~~d~~~~~~~~~~~~~~~~~ 445 (734)
.+ ........ . ++++++...... .-..++.||+ +++ +++.+.
T Consensus 239 ~~p~~r~~~~~~~--~-~~~i~v~GG~~~~~~~~~v~~yd~-----~~~--~W~~~~ 285 (301)
T 2vpj_A 239 SMTTPRCYVGATV--L-RGRLYAIAGYDGNSLLSSIECYDP-----IID--SWEVVT 285 (301)
T ss_dssp CCSSCCBSCEEEE--E-TTEEEEECCBCSSSBEEEEEEEET-----TTT--EEEEEE
T ss_pred CCCCcccceeEEE--E-CCEEEEEcCcCCCcccccEEEEcC-----CCC--eEEEcC
Confidence 22 11111121 1 234554432111 1256889998 455 565543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.14 Score=49.72 Aligned_cols=191 Identities=12% Similarity=0.093 Sum_probs=103.9
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.++.++ |+.|..+....| +|.++|+++|+.+...... ...+..-+++|++||...- ..
T Consensus 58 qGL~~~--~~~Ly~stG~~g----~v~~iD~~Tgkv~~~~l~~-~~FgeGit~~g~~Ly~ltw---------------~~ 115 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQG----TLRQLSLESAQPVWMERLG-NIFAEGLASDGERLYQLTW---------------TE 115 (268)
T ss_dssp EEEEEE--TTEEEEEETTTT----EEEECCSSCSSCSEEEECT-TCCEEEEEECSSCEEEEES---------------SS
T ss_pred ceEEEE--CCEEEEEcCCCC----EEEEEECCCCcEEeEECCC-CcceeEEEEeCCEEEEEEc---------------cC
Confidence 456676 566666554433 3999999999976544222 2234445778888876642 23
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc-
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM- 303 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~- 303 (734)
..+++++..+.... .-+..+.+ +...++||+.|+.+. + .+.|+.+|.++.. ....+.-..
T Consensus 116 ~~v~V~D~~Tl~~~--~ti~~~~e-----GwGLt~Dg~~L~vSd--G--s~~l~~iDp~T~~--------v~~~I~V~~~ 176 (268)
T 3nok_A 116 GLLFTWSGMPPQRE--RTTRYSGE-----GWGLCYWNGKLVRSD--G--GTMLTFHEPDGFA--------LVGAVQVKLR 176 (268)
T ss_dssp CEEEEEETTTTEEE--EEEECSSC-----CCCEEEETTEEEEEC--S--SSEEEEECTTTCC--------EEEEEECEET
T ss_pred CEEEEEECCcCcEE--EEEeCCCc-----eeEEecCCCEEEEEC--C--CCEEEEEcCCCCe--------EEEEEEeCCC
Confidence 47999998775421 12222211 235568999887642 2 3689999998831 111111111
Q ss_pred --cc--eEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee---c------CCCCceeEEEEEeeC-CEEEE
Q psy4818 304 --DH--HHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI---P------EDENRTLDVVAAVAN-NKLIV 368 (734)
Q Consensus 304 --~~--~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~---~------~~~~~~~~~~~~~~~-~~l~~ 368 (734)
.. .... |. +| +||..... ...|.++|.++++-..+..+- + .....++.++.+..+ +++++
T Consensus 177 g~~v~~lNeLe~~-dG-~lyanvw~---s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 177 GQPVELINELECA-NG-VIYANIWH---SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp TEECCCEEEEEEE-TT-EEEEEETT---CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred CcccccccccEEe-CC-EEEEEECC---CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 10 0111 33 55 67754433 246999999887621111211 1 112356777776643 45555
Q ss_pred EEEeCCceeEEEEEC
Q psy4818 369 HYIQNVRSVMDLHDL 383 (734)
Q Consensus 369 ~~~~~~~~~l~~~dl 383 (734)
+. . --+.+|.+.+
T Consensus 252 TG-K-~Wp~~~ev~~ 264 (268)
T 3nok_A 252 TG-K-LWPRLFEVRL 264 (268)
T ss_dssp EE-T-TCSEEEEEEE
T ss_pred eC-C-CCCceEEEEE
Confidence 43 2 2356665543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.13 Score=57.48 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=116.6
Q ss_pred EEEEEEECCCCC-ccccccccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEec
Q psy4818 168 NTLHIKDVDTGK-DYPEVLKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEF 245 (734)
Q Consensus 168 ~~l~v~dl~~g~-~~~~~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~ 245 (734)
.+|+++|+++.. ......... ...+++|++++..||++... ..+|++.++.+... ...+...
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~---------------~~~I~r~~~~g~~~-~~~v~~~ 81 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS---------------EEAIKRTEFNKTES-VQNVVVS 81 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETT---------------TTEEEEEEC------CEEEECS
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECC---------------CCeEEEEEccCCCc-eEEEEeC
Confidence 368889988653 111111111 22578999999888887532 23788888876422 1223332
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec-cccceE-EEEEecCCeEEEEeCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHH-EIIANNGPELIVKTTK 323 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~-~~~~~~-~~~s~dg~~l~~~s~~ 323 (734)
. ...-.++++.+.++.|++... ....|.++++++. . .+.++. ....-. -.+.|.++.|||.-..
T Consensus 82 ~--~~~P~GlAvD~~~~~ly~~d~---~~~~I~v~~~dG~-~--------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g 147 (619)
T 3s94_A 82 G--LLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDGS-L--------RKVLFWQELDQPRAIALDPSSGFMYWTDWG 147 (619)
T ss_dssp S--CSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC-S--------CEEEECSSCSCCCCEEEETTTTEEEEEECS
T ss_pred C--CCCcCeEEEEecCCEEEEEeC---CCCEEEEEECCCC-C--------EEEEEeCCCCCCceEEEecCCCeEEEeccC
Confidence 1 123467899999998887642 2368999999872 1 122331 111111 1377877788876432
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCC-CCceEEe
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITH 401 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~-~~g~v~~ 401 (734)
...+|++.++++.. .+.++... -....++.+. +++.||+.-. ....|+++++ +|...+.+.. ......+
T Consensus 148 --~~~~I~r~~~dG~~---~~~l~~~~-~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~-dG~~~~~~~~~~~~~P~g 218 (619)
T 3s94_A 148 --EVPKIERAGMDGSS---RFIIINSE-IYWPNGLTLDYEEQKLYWADA--KLNFIHKSNL-DGTNRQAVVKGSLPHPFA 218 (619)
T ss_dssp --SSCEEEEEETTSCS---CEEEECSS-CSSEEEEEEETTTTEEEEEET--TTCCEEEESS-SCCEEC---------CCC
T ss_pred --CCCEEEEEECCCCc---eEEEEeCC-CCCCcEEEEEccCCEEEEEeC--CCCeEEEecC-CCCccEEEEeCCCCCceE
Confidence 24679999998765 34455433 2233455554 3478887743 3468999999 5655444422 1111123
Q ss_pred eccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 402 ISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 402 ~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++.. ++.++++ .+. -..++++|.
T Consensus 219 i~~~--~~~ly~t--d~~-~~~V~~~d~ 241 (619)
T 3s94_A 219 LTLF--EDILYWT--DWS-THSILACNK 241 (619)
T ss_dssp EEES--SSEEEEE--CTT-TCSEEEEES
T ss_pred EEEe--CCEEEEe--cCC-CCEEEEEEC
Confidence 3333 3455543 222 246888887
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0042 Score=70.74 Aligned_cols=217 Identities=10% Similarity=0.017 Sum_probs=112.7
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCC---CCCCeeEEec
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTE---QDKDIPVVEF 245 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~---~~~~~~v~~~ 245 (734)
.|+++++.+++............+++|.+++..||++... ..+|+++++.+. .....++...
T Consensus 387 ~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~---------------~~~I~~~~~~g~~~~~~~~~~i~~~ 451 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------------QRMICSTQLDRAHGVSSYDTVISRD 451 (699)
T ss_dssp C-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT---------------TTSBEEEESCCCCC-CCCCCBCCSC
T ss_pred ceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC---------------CCeEEEEecCCCCCCcceEEEEeCC
Confidence 5888888877643322222233689999998888876421 236888887751 1111111111
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc-cc-ceEEEEEecCCeEEEEeCC
Q psy4818 246 PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG-MD-HHHEIIANNGPELIVKTTK 323 (734)
Q Consensus 246 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~-~~-~~~~~~s~dg~~l~~~s~~ 323 (734)
.. ...++++.+.++.|+++. .....|+++++++. ....++.. .. ...-.++|++++||+.. .
T Consensus 452 ~~---~P~glavD~~~g~LY~tD---~~~~~I~v~d~dg~---------~~~~l~~~~~~~P~giavDp~~g~ly~td-~ 515 (699)
T 1n7d_A 452 IQ---APDGLAVDWIHSNIYWTD---SVLGTVSVADTKGV---------KRKTLFREQGSKPRAIVVDPVHGFMYWTD-W 515 (699)
T ss_dssp C-----CCCEECCCSSSBCEECC---TTTSCEEEEBSSSC---------CEEEECCCSSCCCCCEECCSSSSCCEECC-C
T ss_pred CC---CcceEEEEeeCCcEEEEe---ccCCeEEEEecCCC---------ceEEEEeCCCCCcceEEEccCCCcEEEcc-c
Confidence 11 113567777777776642 22367999998762 11222221 11 11113677777777643 2
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeeeCC-C--CceE
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-D--LGQI 399 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~-~--~g~v 399 (734)
+...+|+++++++.. .+.++... -....++.+. +++.||++-. ....|+++++ +|...+.+.. . ....
T Consensus 516 -~~~~~I~~~~~dG~~---~~~l~~~~-l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~-dG~~~~~~~~~~~~~~~P 587 (699)
T 1n7d_A 516 -GTPAKIKKGGLNGVD---IYSLVTEN-IQWPNGITLDLLSGRLYWVDS--KLHSISSIDV-NGGNRKTILEDEKRLAHP 587 (699)
T ss_dssp -SSSCCEEBCCSSSCC---CCEESCSS-CSSCCCEEECTTTCCEEEEET--TTTEEEEECS-SSSCCEEECCCSSSCSSC
T ss_pred -CCCCeEEEEeCCCCC---eeEEEeCC-CCCccEEEEeccCCEEEEEec--CCCeEEEEcc-CCCceEEEEecCCcCCCc
Confidence 223579999987654 23333222 1222344454 3467777653 3468999999 4544343321 1 1111
Q ss_pred EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 400 THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 400 ~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++++ +++.++++- +. -..|+++|.
T Consensus 588 ~glav--d~~~lywtd--~~-~~~V~~~d~ 612 (699)
T 1n7d_A 588 FSLAV--FEDKVFWTD--II-NEAIFSANR 612 (699)
T ss_dssp CCCEE--ETTEEEEEC--ST-TTCEEEEET
T ss_pred eEeEE--ECCEEEEEe--CC-CCeEEEEEc
Confidence 12322 344555543 22 246888886
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.03 Score=57.53 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCCeEEEeCCC-CcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--------
Q psy4818 115 SILYVQRNLTGSTEVFLDPN-KLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-------- 185 (734)
Q Consensus 115 ~~l~~~~~~~g~~~~l~d~~-~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-------- 185 (734)
..|++.+..++.....++.. .... ....+.+++++|++..+ |..+.++.....|+++|+++|+......
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~-~~~~~~~v~vd~~~g~~-yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITL-SNSFVNDLAVDLIHNFV-YISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSC-TTCCCCEEEEETTTTEE-EEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CeEEEEECCCCeEEEEEECChhhcc-cccccceEEEecCCCEE-EEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 35777665555433333322 1111 11234678999987654 5555432233689999998876322100
Q ss_pred ------cc----------------cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCC---CC-C--
Q psy4818 186 ------KN----------------VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGT---EQ-D-- 237 (734)
Q Consensus 186 ------~~----------------~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t---~~-~-- 237 (734)
.+ ....+++|||||+.||+.... ..+||+++... .. .
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~---------------~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH---------------STSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS---------------CSEEEEEEHHHHTCTTCCHH
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC---------------CCeEEEEEHHHhcCCCCChh
Confidence 00 112568999999999887642 22688776421 10 0
Q ss_pred ---CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 238 ---KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 238 ---~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
..+....... ...++++++||+ |++... ..+.|+++|.++
T Consensus 236 ~~~~~~~~~g~~g---~pdgia~d~~G~-l~va~~---~~~~V~~~d~~~ 278 (343)
T 2qe8_A 236 ELGSKIERYSEKP---ICDGISIDKDHN-IYVGDL---AHSAIGVITSAD 278 (343)
T ss_dssp HHHTTCEEEEECC---SCSCEEECTTCC-EEEEEG---GGTEEEEEETTT
T ss_pred hhhcceEecccCC---CCceEEECCCCC-EEEEcc---CCCeEEEEECCC
Confidence 0011111111 123578999986 343322 236899999844
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.32 Score=52.09 Aligned_cols=246 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred eeEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCccccccccc----ccCeeEE-------EcCCcEEEEEEEecCCC
Q psy4818 145 KLYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNV----KFPSISW-------THDHKGFFYNQYCDING 212 (734)
Q Consensus 145 ~~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~----~~~~~~w-------SpDg~~l~y~~~~~~~~ 212 (734)
.+++++| ++..|.++.... ..|+++|++++.......... ....++| ++||++||++....
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~----~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~--- 214 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGH----KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD--- 214 (496)
T ss_dssp EEEEEETTEEEEEEEEEETE----EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC---
T ss_pred CEEEEccCCCCEEEEEECCC----CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC---
Q ss_pred CCCCCcccccC---CcEEEEEECCC--CCC--CCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCC--
Q psy4818 213 TADGTETTAHM---GQKIYYHVLGT--EQD--KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH-- 283 (734)
Q Consensus 213 ~~~~~~~~~~~---~~~l~~~~l~t--~~~--~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~-- 283 (734)
.. ...|++.+... .-. .+......-..+ .+++.+|++++|++..... ..|+++|++
T Consensus 215 ---------~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p---~giavdp~~g~LYvtd~~~---g~V~r~d~~~~ 279 (496)
T 3kya_A 215 ---------GKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQC---NGATIHPINGELYFNSYEK---GQVFRLDLVDY 279 (496)
T ss_dssp ---------TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCC---CCEEECTTTCCEEEEETTT---TEEEEECHHHH
T ss_pred ---------CCcccCceEEEEecCCCCceeecccceeeccCCCc---eEEEEcCCCCeEEEEECCC---CEEEEEecccc
Q ss_pred -----CCCCCcccCCCC-----------ceeeeccccceEEE---EEecCCeEEEEeCCCCCCceEEE--EecCCCCCCC
Q psy4818 284 -----SLPDGKISGKFP-----------LKTVIPGMDHHHEI---IANNGPELIVKTTKNAPKGKVVT--INLNNPCEKN 342 (734)
Q Consensus 284 -----~~~~~~l~~~~~-----------~~~l~~~~~~~~~~---~s~dg~~l~~~s~~~~~~~~l~~--~d~~~~~~~~ 342 (734)
+ ... ...+..-....+.. |+|+|+.||+.-.. +++|++ .|..++....
T Consensus 280 ~~~~~t--------g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~---~h~I~kid~dg~~~~~~~ 348 (496)
T 3kya_A 280 FKTIKN--------GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN---NHYFMRSDYDEIKKEFIT 348 (496)
T ss_dssp HHHHHT--------TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT---TTEEEEEEEETTTTEECC
T ss_pred cccccC--------ceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC---CCEEEEEecCCCcceecc
Q ss_pred ceEeecC--------------CCCceeEEEEEe-------eCCEEEEEEEeCCceeEEEEECCCCceeeeeCC-------
Q psy4818 343 WKTLIPE--------------DENRTLDVVAAV-------ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL------- 394 (734)
Q Consensus 343 ~~~l~~~--------------~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~------- 394 (734)
...+... .-......+... .++.||++-..+ .+|++++. +|...+..-.
T Consensus 349 ~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N--~rIr~i~~-~G~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 349 PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN--FCVRKVTP-EGIVSTYAGRGASTSLA 425 (496)
T ss_dssp CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG--TEEEEECT-TCBEEEEEESCTTHHHH
T ss_pred cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC--CEEEEEeC-CCCEEEEeccccccccc
Q ss_pred ----------------CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 395 ----------------DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 395 ----------------~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
....-.++..+++...|+++=+.-. +|.++++
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~---rIrki~~ 473 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH---TIRTISM 473 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT---EEEEEEE
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC---EEEEEEC
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 734 | ||||
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 4e-84 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 7e-45 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 1e-16 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 2e-15 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 2e-14 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 3e-14 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 4e-14 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 6e-13 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 3e-10 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 7e-09 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 3e-07 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 6e-07 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 7e-06 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 2e-05 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 1e-04 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 2e-04 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 4e-04 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 271 bits (692), Expect = 4e-84
Identities = 180/429 (41%), Positives = 261/429 (60%), Gaps = 5/429 (1%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIK 81
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R K
Sbjct: 5 QYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYK 64
Query: 82 EQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGT 141
E++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 65 ERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGT 124
Query: 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG 201
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKG 184
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG 261
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D G
Sbjct: 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG 244
Query: 262 RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
RY+L+S + ++ I+G +I + ++ + N G KT
Sbjct: 245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + LH
Sbjct: 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++ +P
Sbjct: 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL-----TKEELEP 419
Query: 442 TIFRETIVP 450
+FRE V
Sbjct: 420 RVFREVTVK 428
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 160 bits (404), Expect = 7e-45
Identities = 144/279 (51%), Positives = 200/279 (71%), Gaps = 1/279 (0%)
Query: 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMF 513
+ +QT Q+++ SKDGT++PM+I+H+ G + +P +YGYGG+ +S+ P +S+SR +F
Sbjct: 2 ASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIF 61
Query: 514 LRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIM 573
+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI
Sbjct: 62 VRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTIN 121
Query: 574 GGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNL 633
GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L
Sbjct: 122 GGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWL 181
Query: 634 LSYSPLHNIKVPP-NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692
+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL
Sbjct: 182 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 241
Query: 693 LRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 242 IHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 280
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.6 bits (192), Expect = 1e-16
Identities = 42/264 (15%), Positives = 73/264 (27%), Gaps = 16/264 (6%)
Query: 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSISRCM-FLRHFNGIYAI 523
D +PM I+ P+++ G SV F +S + +
Sbjct: 9 EIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVK 68
Query: 524 PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVG 583
+ RG G G + R D A M+ ++Y + + G GG L
Sbjct: 69 CDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLST 128
Query: 584 ACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIK 643
L + E G AL + K + SE + H +
Sbjct: 129 YILPAKGENQGQTFTCGSALSPITDFKLY--ASAFSERYLGLHGLDNRAYEMTKVAHRVS 186
Query: 644 VPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 703
D+++ H+ + I L K L++ D H
Sbjct: 187 ALEEQQFLII----HPTADEKIHFQHTAELITQLIRG-------KANYSLQIYPDESHYF 235
Query: 704 GTPLMKSIEEMTDIYVFLMKSLGL 727
+ I F ++ +
Sbjct: 236 TSS-SLKQHLYRSIINFFVECFRI 258
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 34/279 (12%), Positives = 67/279 (24%), Gaps = 32/279 (11%)
Query: 451 EFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISR 510
++ + ++ ++S R+ + +P I+ +G I
Sbjct: 48 DYPADGVKVYRLTYKSFGNARITGWYAVPDKE---GPHPAIVKYHGYNASY---DGEIHE 101
Query: 511 CMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL--------------LKKQNCFDDFQAAA 556
+ +RG + + + + D A
Sbjct: 102 MVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRAL 161
Query: 557 EYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI--A 614
E + + I + GGS GG L A A + R +
Sbjct: 162 EVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVALEQP 221
Query: 615 YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674
Y + F N + + + + L+ G D PP +
Sbjct: 222 YLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAY 281
Query: 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEE 713
L+ L+V + GH
Sbjct: 282 NHLET----------KKELKVYRYFGHEYIPAFQTEKLA 310
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 38/275 (13%), Positives = 63/275 (22%), Gaps = 33/275 (12%)
Query: 451 EFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSIS- 509
E + V F G R+ +++ + P ++ G G P +
Sbjct: 47 ESHLKTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFPHDWLFW 104
Query: 510 ------------RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ----NCFDDFQ 553
R G + G L + F D
Sbjct: 105 PSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAV 164
Query: 554 AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT- 612
A E + + I I GGS GG + A + + R +
Sbjct: 165 RAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVD 224
Query: 613 -IAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSY 671
Y + F + + S + L G D+ PP +
Sbjct: 225 THPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAK--IPALFSVGLMDNICPPSTVF 282
Query: 672 KFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP 706
P +R+ H G
Sbjct: 283 AAYNYYAG----------PKEIRIYPYNNHEGGGS 307
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 71.4 bits (173), Expect = 3e-14
Identities = 41/271 (15%), Positives = 81/271 (29%), Gaps = 18/271 (6%)
Query: 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSISRCMFLRHF 517
+K++ F + T+ +I ++++ P+++ Y G F ++ +L
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLAST 62
Query: 518 NG-IYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGS 576
I A + RG G G+ +A +D AA + K I I G S
Sbjct: 63 ENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWS 122
Query: 577 NGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY 636
GG + L ++ + + ++ Y N + ++ +
Sbjct: 123 YGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMS 182
Query: 637 SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVE 696
+ +V DD V S + L +
Sbjct: 183 RAENFKQVEYLLIHGT--------ADDNVHFQQSAQISKALVDV-------GVDFQAMWY 227
Query: 697 QDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727
D HG + T + F+ + L
Sbjct: 228 TDEDHGIASS-TAHQHIYTHMSHFIKQCFSL 257
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 71.1 bits (172), Expect = 4e-14
Identities = 43/278 (15%), Positives = 82/278 (29%), Gaps = 21/278 (7%)
Query: 449 VPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS 507
+PE ++ ++ V+ S DG+RVP Y++ A P ++ +GG ++
Sbjct: 1 LPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWD 58
Query: 508 ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567
+ G E + +A ++
Sbjct: 59 TFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIG---DPCGGELEDVSAAARWARESGLA 115
Query: 568 KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNK 627
+ IMG S GG + L +P L+ A + +D + + A +
Sbjct: 116 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 175
Query: 628 THFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 687
S + P +P +D R P + + L +
Sbjct: 176 REIMRSRSPINHVDRIKEPLALIHP-------QNDSRTPLKPLLRLMGELLAR------- 221
Query: 688 KNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725
+ DAGH T +++ + FL
Sbjct: 222 GKTFEAHIIPDAGHAINTM-EDAVKILLPAVFFLATQR 258
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 68.6 bits (166), Expect = 6e-13
Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 16/182 (8%)
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVII----YGYG 496
P I + V + ++V +DG ++ I+ GA + P+++ Y
Sbjct: 6 PDITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKGA---KNAPIVLTRTPYDAS 62
Query: 497 GYGVSVLPTFSISR----CMFLRHFNGIYAIPNIRGGGELGEDWH-----NAGRLLKKQN 547
G + I ++RG D+ + +
Sbjct: 63 GRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVD 122
Query: 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR 607
D ++++ + ++G S G V L A+ +D
Sbjct: 123 HATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWM 182
Query: 608 FN 609
+
Sbjct: 183 GD 184
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 60.1 bits (145), Expect = 3e-10
Identities = 17/143 (11%), Positives = 36/143 (25%), Gaps = 15/143 (10%)
Query: 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD---MLRFNKFTIAYYSESEFGS 623
P +++ G ++GG + +++ + + Y +
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITT 69
Query: 624 PNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683
P + + + N+ + TG D V P + A L
Sbjct: 70 PTANMKSWSGNQIASVANLGQRK-------IYMWTGSSDTTVGPNVMNQLKAQLGNF--- 119
Query: 684 LPYQKNPLLLRVEQDAGHGQGTP 706
+ A H T
Sbjct: 120 --DNSANVSYVTTTGAVHTFPTD 140
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 56.3 bits (134), Expect = 7e-09
Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 19/192 (9%)
Query: 445 RETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVII----YGYGGYGV 500
+P + + ++V +DG ++ I+ A R P+++ Y G
Sbjct: 14 ASVHMPTDQQRDYIKREVMVPMRDGVKLYTVIVIPKNA---RNAPILLTRTPYNAKGRAN 70
Query: 501 SVLPTFSISRC------MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF----- 549
V ++ +F+ I +IRG D+ N
Sbjct: 71 RVPNALTMREVLPQGDDVFVEG-GYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDET 129
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 609
D +++++ + + G S G V L A +D +
Sbjct: 130 TDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGD 189
Query: 610 KFTIAYYSESEF 621
+
Sbjct: 190 DWFHYGAFRQGA 201
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 50.0 bits (118), Expect = 3e-07
Identities = 29/264 (10%), Positives = 68/264 (25%), Gaps = 12/264 (4%)
Query: 454 PTLFQTKQVYFRSKDGTR-VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCM 512
+ F S DGTR ++ P++ G + L + +
Sbjct: 8 SVFYHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDDELLKQ-- 65
Query: 513 FLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITI 572
+ + + ++ D + + + +
Sbjct: 66 LSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLE 125
Query: 573 MGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHN 632
+ QR L+G + + LD + + +YYS S
Sbjct: 126 TRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYYSASPSLGRGYDALLSR 185
Query: 633 LLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692
+ + PL + AT + + + L++K +
Sbjct: 186 VTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDK-------GVNAV 238
Query: 693 LRVEQDAGHG--QGTPLMKSIEEM 714
+ GHG +++ ++
Sbjct: 239 FWDFPNLGHGPMFNASFRQALLDI 262
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.6 bits (117), Expect = 6e-07
Identities = 25/214 (11%), Positives = 57/214 (26%), Gaps = 17/214 (7%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCM--FLRHFNGIYAIPN 525
G + + +P + G + I+ + +P
Sbjct: 19 MGRDIKVQFQ-----SGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPV 73
Query: 526 IRGGGELGEDWHNA-GRLLKKQNCFDDF--QAAAEYMINKKYTKPKYITIMGGSNGGLLV 582
+ + A G+ + ++ F ++ ++ KP ++G S
Sbjct: 74 GGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSA 133
Query: 583 GACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLS-----YS 637
P+ + A + G LD + T+ + + G +
Sbjct: 134 LTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRND 193
Query: 638 PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSY 671
PL N+ N V G+ ++
Sbjct: 194 PLLNVGKLIANN--TRVWVYCGNGKPSDLGGNNL 225
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 46.5 bits (109), Expect = 7e-06
Identities = 43/273 (15%), Positives = 73/273 (26%), Gaps = 37/273 (13%)
Query: 444 FRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL 503
VY R +G +I + G
Sbjct: 102 LSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIM-------------LGGLESTKEESF 148
Query: 504 PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563
+ + L + G GE+ E AG + A + + +
Sbjct: 149 QMEN----LVLDRGMATAT-FDGPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLE 197
Query: 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGS 623
+ I ++G S GG P A + G D+ ++ T ++ S
Sbjct: 198 AIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVS 256
Query: 624 PNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683
+ L ++ L V T +L G D VP + + +
Sbjct: 257 KVDTLEEARLHVHAALETRDVLSQIA--CPTYILHGV-HDEVPLSFVDTVLELVPAE--- 310
Query: 684 LPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTD 716
L L VE+D H ++ EM D
Sbjct: 311 ------HLNLVVEKDGDHCCHNLGIRPRLEMAD 337
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 32/240 (13%), Positives = 55/240 (22%), Gaps = 36/240 (15%)
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 549
+ ++G G +L + + GE ++ + +
Sbjct: 28 LALHGLQGSKEHILA-----LLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 550 DDF----QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM 605
+ A + + + GGS G + L + G
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAF------- 135
Query: 606 LRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRV 665
S P + + L L G D V
Sbjct: 136 ---------IGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIV 186
Query: 666 PPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725
P K + L+ Y + L VE+ AGH + FL L
Sbjct: 187 PLARMEKTLEALRPH-----YPEGRLARFVEEGAGHT------LTPLMARVGLAFLEHWL 235
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 25/232 (10%), Positives = 62/232 (26%), Gaps = 23/232 (9%)
Query: 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF 517
+T R +G + ++ + + N ++I G+ + ++ + F
Sbjct: 3 KTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIAS--GFARRMDHFAGLAEYLSTNGF 60
Query: 518 NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 577
+ ++ ++ G K + + + I ++ S
Sbjct: 61 H-VFRYDSLHHVGLSSGSIDEFTMTTGKNSLCT-------VYHWLQTKGTQNIGLIAASL 112
Query: 578 GGLLV----------GACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNK 627
+ L D L + + E ++
Sbjct: 113 SARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSE 172
Query: 628 THFHNLLS--YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+ + L + NT P + T ++DD V Y +A +
Sbjct: 173 VFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHI 223
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 13/150 (8%)
Query: 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHF 517
V +DG R+ + + PV++ Y + V T S + F+R
Sbjct: 6 SNVMVPMRDGVRLAVDLYRPDAD---GPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRD- 61
Query: 518 NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 577
I + RG ++ + I ++ + + G S
Sbjct: 62 GYAVVIQDTRGLFASEGEFV-------PHVDDEADAEDTLSWILEQAWCDGNVGMFGVSY 114
Query: 578 GGLLVGACLNQRPELYGAALILVGALDMLR 607
G+ A + + D+ R
Sbjct: 115 LGVTQWQAAVSGVGGLKAIAPSMASADLYR 144
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 23/157 (14%), Positives = 40/157 (25%), Gaps = 12/157 (7%)
Query: 520 IYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI----NKKYTKPKYITIMGG 575
+P G DW+ + + + M K P +G
Sbjct: 63 SVIMPV-GGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGL 121
Query: 576 SNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLS 635
S G P+ + A L G L+ T+ + ++ G N + +
Sbjct: 122 SMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSD 181
Query: 636 -----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP 667
P+ I N V G+
Sbjct: 182 PAWKRNDPMVQIPRLVANN--TRIWVYCGNGTPSDLG 216
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 734 | |||
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 100.0 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 100.0 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.92 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.9 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.87 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.85 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.85 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.85 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.85 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.84 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.84 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.84 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.82 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.82 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.82 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.81 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.8 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.8 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.79 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.79 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.78 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.77 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.75 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.74 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.73 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.73 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.72 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.72 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.71 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.7 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.68 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.67 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.66 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.66 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.66 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.65 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.65 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.65 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.64 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.64 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.64 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.61 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.61 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.6 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.6 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.6 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.6 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.6 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.59 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.59 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.59 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.58 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.57 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.57 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.57 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.57 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.55 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.54 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.53 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.53 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.53 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.51 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.48 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.48 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.47 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.47 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.44 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.38 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.37 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.36 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.35 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.34 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.33 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.31 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.3 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.29 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.25 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.2 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.16 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.15 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.14 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.11 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.11 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.09 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.06 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.05 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.0 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.0 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.99 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.97 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.97 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.89 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.84 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.82 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.78 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.78 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.75 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.73 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.72 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.72 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.72 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.72 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.7 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.7 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.69 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.68 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.68 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.66 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.66 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.63 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.63 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.62 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.61 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.59 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.56 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.55 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.51 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.5 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.49 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.49 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.45 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.45 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.45 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.34 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.33 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.32 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.25 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.24 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.21 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.19 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 98.17 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.15 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.14 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.04 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.0 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.82 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.82 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.8 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.77 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.72 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.7 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.7 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.65 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.62 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.56 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.55 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.54 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.5 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.46 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.41 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.36 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.34 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.32 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.2 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.9 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.73 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.69 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.44 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.41 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.33 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.33 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.31 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.27 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.18 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.69 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 94.58 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 94.16 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 93.93 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 92.95 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 86.82 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 82.4 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 82.25 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 81.33 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 80.39 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 80.33 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 80.24 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2.1e-55 Score=475.72 Aligned_cols=427 Identities=43% Similarity=0.795 Sum_probs=365.3
Q ss_pred cCCCCCCCccCCceeccccCceecCCCcccCCCCChhHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHhccCCccCCcEE
Q psy4818 19 FTGPYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQR 98 (734)
Q Consensus 19 ~~~~~P~~~~~~~~~~~~hg~~~~D~y~wled~~~~~~~~~~~~q~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~ 98 (734)
+.+.||+++|+..+++++||+++.|||+||||.++|++++||++||+||+++|+++++++.+.++++++...++.+.|..
T Consensus 2 ~~~~yP~~~~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~wl~~eN~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (430)
T d1qfma1 2 LSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFK 81 (430)
T ss_dssp CCSCCCCCCCCTTCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHSSTHHHHHHHHHHHHTCSCEECCCEE
T ss_pred CCCCCCCCcCCCCeeeccCCCEEeeCchhhcCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhcCCceeeeEE
Confidence 46788888766545599999999999999999999999999999999999999999999999999999998889999999
Q ss_pred eCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy4818 99 QENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 178 (734)
Q Consensus 99 ~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g 178 (734)
+|+++||.++.+++++..+|++...++++++|||+|++++++.+.+.++++||||++|||+.+.+|+|.++|+++|+++|
T Consensus 82 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg 161 (430)
T d1qfma1 82 KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA 161 (430)
T ss_dssp ETTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT
T ss_pred eCCEEEEEEecCCCccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcc
Confidence 99999999998888888999998888999999999999998888899999999999999999999999999999999999
Q ss_pred CcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEe
Q psy4818 179 KDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVT 258 (734)
Q Consensus 179 ~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S 258 (734)
+.+...+.++.+++++|++|++.|+|++.+......++..++.+++.+||+|++|+++.++++++++.+++.++..+..|
T Consensus 162 ~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s 241 (430)
T d1qfma1 162 KELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS 241 (430)
T ss_dssp EEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC
T ss_pred eecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeecc
Confidence 98887777776678999999999999998765444455666778899999999999999999999988777788888999
Q ss_pred cCCcEEEEEEecCCCC-ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCC
Q psy4818 259 DCGRYLLVSTSNNTQG-SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN 337 (734)
Q Consensus 259 pDG~~l~~~~~~~~~~-~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 337 (734)
+||+++++....+... +.+|++|+.. ....+.....+..++......+.++.++|+.+|+++|.++++++|+.++++.
T Consensus 242 ~d~~~l~i~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~ 320 (430)
T d1qfma1 242 DDGRYVLLSIREGCDPVNRLWYCDLQQ-ESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTD 320 (430)
T ss_dssp TTSCEEEEEEECSSSSCCEEEEEEGGG-SSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTB
T ss_pred CCcceeeEEeeccCCccEEEEEeeCCC-cccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCC
Confidence 9999999887665443 7899999876 3334444455666776666666678889999999999999999999999988
Q ss_pred CCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEec
Q psy4818 338 PCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss 417 (734)
+...+|+.++++.+..++.......++++++....++.++|.++++.+++.......+.+++..++.+++++.+++.++|
T Consensus 321 ~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss 400 (430)
T d1qfma1 321 PEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS 400 (430)
T ss_dssp CCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred CccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcC
Confidence 76667999999875655554444444899999999999999999997776644434447888788888888899999999
Q ss_pred CCCCceEEEEeCCCCcCCCCCCceeEEeeccCCC
Q psy4818 418 FLQPGTIYHCNIPENITDQDDFKPTIFRETIVPE 451 (734)
Q Consensus 418 ~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 451 (734)
+++|+.+|.+|+ ++++++.+++++.++++
T Consensus 401 ~~tP~~~y~~Dl-----~t~~~~~~~~k~~~v~G 429 (430)
T d1qfma1 401 FLSPGIIYHCDL-----TKEELEPRVFREVTVKG 429 (430)
T ss_dssp SSCCCEEEEEET-----TSSSCCCEEEEECCCTT
T ss_pred CCCCCeEEEEEC-----CCCCcceeeEeccCCCC
Confidence 999999999999 67755667888877665
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.2e-34 Score=289.34 Aligned_cols=278 Identities=52% Similarity=0.997 Sum_probs=228.7
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
+++|++|+|+|++.||.+|+++|++|+++++++++|+||++|||++.+..+.+......++...|++++..+++++..++
T Consensus 2 ~~~y~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (280)
T d1qfma2 2 ASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYG 81 (280)
T ss_dssp GGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTH
T ss_pred cccCEEEEEEEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccc
Confidence 45678999999999999999999999998888999999999999999888888777767777778999999988888777
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccccc
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI 613 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~ 613 (734)
..+.............++...++.+...+...+..+++++|+|.||+++..++...+++++++++.+++.++........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (280)
T d1qfma2 82 ETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTI 161 (280)
T ss_dssp HHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT
T ss_pred hhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccccc
Confidence 77777666666666777788888888888888999999999999999999999999999999999999999877655444
Q ss_pred CcccccccCCCCCHHHHHHHHhCCccCCCCCCCC-CccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 614 AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPN-NTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 614 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~-~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
...+..........+........+|+.++..... ...+||+||+||++|++||+.|+++|+++|++...+.+..|+|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~~ 241 (280)
T d1qfma2 162 GHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 241 (280)
T ss_dssp GGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEE
T ss_pred cccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcEE
Confidence 3333333344444455555666666665442100 246778999999999999999999999999887554445589999
Q ss_pred EEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCCCCC
Q psy4818 693 LRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731 (734)
Q Consensus 693 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 731 (734)
|++++++||+|.....+.++.+.++++||.++|+.+|.|
T Consensus 242 l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~~~ 280 (280)
T d1qfma2 242 IHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 280 (280)
T ss_dssp EEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred EEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999998887777888999999999999999987
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2.7e-33 Score=280.50 Aligned_cols=254 Identities=17% Similarity=0.185 Sum_probs=210.1
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccH-HHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSI-SRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~-~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
..|++.|...||+++.+.|++|+++++++++|+||++|||++..... .+.. ....+++++||+|+.+|+||++++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~ 81 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDK 81 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHH
T ss_pred CceeEEEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchH
Confidence 57889999999999999999999998888999999999986553322 2222 223566778999999999999999999
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCc
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY 615 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 615 (734)
|.......++..+.+|+.++++++.++..+|+++|+++|+|+||.++++++..+|++++++++..+......+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 157 (258)
T d2bgra2 82 IMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSV---- 157 (258)
T ss_dssp HHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHH----
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccccc----
Confidence 9998887788888899999999999999999999999999999999999999999999999998887765443221
Q ss_pred ccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEE
Q psy4818 616 YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695 (734)
Q Consensus 616 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 695 (734)
.....++.+......+.+...+|+..+.. ++.+|+|++||++|++||+.++.+++++|+++ |+++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~-------g~~~~~~~ 226 (258)
T d2bgra2 158 YTERYMGLPTPEDNLDHYRNSTVMSRAEN----FKQVEYLLIHGTADDNVHFQQSAQISKALVDV-------GVDFQAMW 226 (258)
T ss_dssp HHHHHHCCCSTTTTHHHHHHSCSGGGGGG----GGGSEEEEEEETTCSSSCTHHHHHHHHHHHHH-------TCCCEEEE
T ss_pred ccchhcccccchhhHHHhhcccccccccc----cccCChheeeecCCCcccHHHHHHHHHHHHHC-------CCCEEEEE
Confidence 11122344433344556778899888775 55445999999999999999999999999999 99999999
Q ss_pred eCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 696 EQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
||+++|++...... .+....+.+||.++|+.
T Consensus 227 ~~g~~H~~~~~~~~-~~~~~~i~~fl~~~l~~ 257 (258)
T d2bgra2 227 YTDEDHGIASSTAH-QHIYTHMSHFIKQCFSL 257 (258)
T ss_dssp ETTCCTTCCSHHHH-HHHHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCCCccH-HHHHHHHHHHHHHHhcC
Confidence 99999998776553 67788899999999975
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=2.8e-33 Score=280.59 Aligned_cols=250 Identities=21% Similarity=0.261 Sum_probs=208.0
Q ss_pred ceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchh
Q psy4818 457 FQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 457 ~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~ 536 (734)
..++.++|++.||.+|+++++.|++. .++.|+||++|||++.+....|... ...|+++||+|+.+|+||++++|..|
T Consensus 10 ~~~~~v~~~s~dG~~i~~~l~~p~~~--~~~~Pviv~~HGG~~~~~~~~~~~~-~~~la~~G~~v~~~d~r~~~~~g~~~ 86 (260)
T d2hu7a2 10 AGSRLVWVESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTF-AASLAAAGFHVVMPNYRGSTGYGEEW 86 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTS--CSSEEEEEEECSSSSCCCCSSCCHH-HHHHHHHTCEEEEECCTTCSSSCHHH
T ss_pred CceEEEEEECCCCCEEEEEEEeCCCC--CCCceEEEEECCCCccCCCccccHH-HHHHHhhccccccceeeecccccccc
Confidence 46888999999999999999999874 4678999999999887777777754 45566789999999999999999999
Q ss_pred hhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcc
Q psy4818 537 HNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYY 616 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 616 (734)
.......++..+++|+.+++++|.+++ ++.+++|+|+|+||++++.++..+|+.++++++.+|+.++.........
T Consensus 87 ~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~-- 162 (260)
T d2hu7a2 87 RLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA-- 162 (260)
T ss_dssp HHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCH--
T ss_pred ccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhccccc--
Confidence 998887777888999999999999874 6789999999999999999999999999999999999987655432211
Q ss_pred cccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEe
Q psy4818 617 SESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVE 696 (734)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 696 (734)
+...+.........+.+.+.+|+.+++. ++.| +||+||+.|.+||+.++.+++++|++. |+++++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~liihG~~D~~vp~~~~~~~~~~l~~~-------~~~~~~~~~ 230 (260)
T d2hu7a2 163 AFRNFIEQLTGGSREIMRSRSPINHVDR----IKEP-LALIHPQNDSRTPLKPLLRLMGELLAR-------GKTFEAHII 230 (260)
T ss_dssp HHHHHHHHHHCSCHHHHHHTCGGGCGGG----CCSC-EEEEEETTCSSSCSHHHHHHHHHHHHT-------TCCEEEEEE
T ss_pred ccccccccccccccccccccchhhcccc----cCCC-ceeeecccCceecHHHHHHHHHHHHHC-------CCCeEEEEE
Confidence 1111100000012345678899999886 7777 999999999999999999999999999 999999999
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 697 QDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 697 ~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
|++||++....+ +.+.+..+++||.+||.
T Consensus 231 ~g~~H~~~~~e~-~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 231 PDAGHAINTMED-AVKILLPAVFFLATQRE 259 (260)
T ss_dssp TTCCSSCCBHHH-HHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCChHh-HHHHHHHHHHHHHHHhc
Confidence 999999987655 46888889999999984
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-33 Score=279.72 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=190.5
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccHH-HHHHHHhcCeEEEEEecccCCCCCchhhhcccccc
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSIS-RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~-~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~ 544 (734)
.||.+|++++++|++++.++++|+||++|||++... ...|... ...+|+++||+|+++|+||++++|..|........
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~~ 89 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 89 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCT
T ss_pred eCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhccc
Confidence 399999999999999888888999999999866543 3344332 24578888999999999999999999998877777
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchhccccccccCcccccc
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDMLRFNKFTIAYYSESE 620 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~ 620 (734)
+..+.+|+.+++++|+++..+|++||+++|+|+||+++++++...++ .|++.+...|+..+....... ....
T Consensus 90 g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 165 (258)
T d1xfda2 90 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAF----SERY 165 (258)
T ss_dssp TTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHH----HHHH
T ss_pred hhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecccccc----cccc
Confidence 78889999999999999999999999999999999999999876654 578888877776543221100 0111
Q ss_pred cCCCC-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCC
Q psy4818 621 FGSPN-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDA 699 (734)
Q Consensus 621 ~g~~~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 699 (734)
++.+. +.+ .+...+|..++.. ...+|+||+||+.|.+||+.++.+++++|++. |+++++++||++
T Consensus 166 ~~~~~~~~~---~~~~~s~~~~~~~----~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~-------~~~~~~~~~p~~ 231 (258)
T d1xfda2 166 LGLHGLDNR---AYEMTKVAHRVSA----LEEQQFLIIHPTADEKIHFQHTAELITQLIRG-------KANYSLQIYPDE 231 (258)
T ss_dssp HCCCSSCCS---STTTTCTHHHHTS----CCSCEEEEEEETTCSSSCHHHHHHHHHHHHHT-------TCCCEEEEETTC
T ss_pred ccccccchH---Hhhccchhhhhhh----hhcccccccccCCCCCcCHHHHHHHHHHHHHC-------CCCEEEEEECCC
Confidence 12221 111 2234556555554 33445999999999999999999999999999 999999999999
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 700 GHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
+|++..... ..+.++.+++||.++|++
T Consensus 232 ~H~~~~~~~-~~~~~~~~~~f~~~~~~~ 258 (258)
T d1xfda2 232 SHYFTSSSL-KQHLYRSIINFFVECFRI 258 (258)
T ss_dssp CSSCCCHHH-HHHHHHHHHHHHTTTTCC
T ss_pred CCCCCCCcC-HHHHHHHHHHHHHHhhCC
Confidence 999976554 467788999999999874
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=6.5e-25 Score=226.67 Aligned_cols=246 Identities=19% Similarity=0.174 Sum_probs=175.3
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
.+.+.++.++|++.||.+|+++++.|++. .++.|+||++||+......+.. . ..++++||+|+++|+||.|..+
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~--~~~~P~Vv~~hG~~~~~~~~~~---~-~~~a~~G~~v~~~D~rG~G~s~ 123 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFPHD---W-LFWPSMGYICFVMDTRGQGSGW 123 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCCCCGGG---G-CHHHHTTCEEEEECCTTCCCSS
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC--CCCccEEEEecCCCCCcCcHHH---H-HHHHhCCCEEEEeeccccCCCC
Confidence 45668899999999999999999999874 5679999999997655433322 2 2345679999999999987665
Q ss_pred chhhhcccccc---------------------CCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc
Q psy4818 534 EDWHNAGRLLK---------------------KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL 592 (734)
Q Consensus 534 ~~~~~~~~~~~---------------------~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~ 592 (734)
........... ....+.|+.++++++..+..+|++|++++|+|+||++++.++...| .
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~ 202 (322)
T d1vlqa_ 124 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-K 202 (322)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-S
T ss_pred CCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-C
Confidence 43222111100 0112578999999999999999999999999999999999998876 5
Q ss_pred eeEEEEcCCcchhcccc-ccccCcccc--ccc--CCCC-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCC
Q psy4818 593 YGAALILVGALDMLRFN-KFTIAYYSE--SEF--GSPN-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVP 666 (734)
Q Consensus 593 ~~a~v~~~~~~d~~~~~-~~~~~~~~~--~~~--g~~~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~ 666 (734)
++++|+.+|..+..... .......+. ..+ ..+. .....+.+..++|..++.. +++| +||+||.+|.+||
T Consensus 203 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~----i~~P-~Lv~~G~~D~~vp 277 (322)
T d1vlqa_ 203 AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAAR----AKIP-ALFSVGLMDNICP 277 (322)
T ss_dssp CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTT----CCSC-EEEEEETTCSSSC
T ss_pred ccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhc----CCCC-EEEEEeCCCCCcC
Confidence 68888888765433221 111111110 011 1122 2344456667888887776 7888 9999999999999
Q ss_pred ChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 667 PLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 667 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
++++.++++++ +.++++++||+++|.+... ......++||.++|.
T Consensus 278 ~~~~~~~~~~~----------~~~~~l~~~p~~~H~~~~~-----~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 278 PSTVFAAYNYY----------AGPKEIRIYPYNNHEGGGS-----FQAVEQVKFLKKLFE 322 (322)
T ss_dssp HHHHHHHHHHC----------CSSEEEEEETTCCTTTTHH-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC----------CCCeEEEEECCCCCCCccc-----cCHHHHHHHHHHHhC
Confidence 99987776554 5688999999999976432 222345799998873
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.2e-24 Score=223.81 Aligned_cols=247 Identities=16% Similarity=0.064 Sum_probs=174.8
Q ss_pred CCCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCC
Q psy4818 453 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGEL 532 (734)
Q Consensus 453 ~~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~ 532 (734)
....+.+++++|++.||.+|+++++.|++ .++.|+||++||+.+.... |.. ....|+++||+|+++|+||+|+.
T Consensus 50 ~~~~~~~~~v~~~~~dg~~i~~~l~~P~~---~~~~P~vv~~HG~~~~~~~--~~~-~~~~la~~Gy~vi~~D~rG~G~s 123 (318)
T d1l7aa_ 50 PADGVKVYRLTYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASYDG--EIH-EMVNWALHGYATFGMLVRGQQRS 123 (318)
T ss_dssp SCSSEEEEEEEEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCSGG--GHH-HHHHHHHTTCEEEEECCTTTSSS
T ss_pred CCCCeEEEEEEEECCCCcEEEEEEEecCC---CCCceEEEEecCCCCCccc--hHH-HHHHHHHCCCEEEEEeeCCCCCC
Confidence 34567899999999999999999999987 4789999999998665543 333 34556778999999999998877
Q ss_pred CchhhhccccccC--------------CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEE
Q psy4818 533 GEDWHNAGRLLKK--------------QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI 598 (734)
Q Consensus 533 g~~~~~~~~~~~~--------------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~ 598 (734)
+..+......... ...+.|...+++++..+..+++++|+++|+|+||.+++.++...++. +++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~~-~~~~~ 202 (318)
T d1l7aa_ 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIP-KAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSCC-SEEEE
T ss_pred CCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCccc-ceEEE
Confidence 6544332111110 12257888899999999999999999999999999999999998765 55666
Q ss_pred cCCcc-hhccccccccCcccc------cccCCCC-CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHH
Q psy4818 599 LVGAL-DMLRFNKFTIAYYSE------SEFGSPN-NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670 (734)
Q Consensus 599 ~~~~~-d~~~~~~~~~~~~~~------~~~g~~~-~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~ 670 (734)
.+|.. ++...........+. ...+... ..+.+..+..+++...+++ ++.| +||+||++|..||+.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~Lii~G~~D~~vp~~~~ 277 (318)
T d1l7aa_ 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADR----VKVP-VLMSIGLIDKVTPPSTV 277 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGG----CCSC-EEEEEETTCSSSCHHHH
T ss_pred eccccccHHHHhhcccccccchhhhhhhcccccccccccccccccccccccccc----CCCC-EEEEEECCCCCcCHHHH
Confidence 66644 332222111111110 0112111 1222333444555555554 7777 99999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 671 YKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 671 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
.+++++| +.++++++|+++||.+. .+...++++||.++|++
T Consensus 278 ~~~~~~l----------~~~~~l~~~~~~gH~~~------~~~~~~~~~fl~~~LkG 318 (318)
T d1l7aa_ 278 FAAYNHL----------ETKKELKVYRYFGHEYI------PAFQTEKLAFFKQILKG 318 (318)
T ss_dssp HHHHHHC----------CSSEEEEEETTCCSSCC------HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHc----------CCCcEEEEECCCCCCCc------HHHHHHHHHHHHHhCCC
Confidence 8888765 45789999999999764 24455689999999974
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.90 E-value=3.9e-23 Score=215.57 Aligned_cols=239 Identities=18% Similarity=0.099 Sum_probs=166.2
Q ss_pred CceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
....|++.++. ||..|+++++.|++ .++.|+||++||..+.... +. .+...|+++||+|+.+|+||.|+....
T Consensus 103 ~~~~e~v~ip~-dg~~l~g~l~~P~~---~~~~P~Vi~~hG~~~~~e~--~~-~~~~~l~~~G~~vl~~D~~G~G~s~~~ 175 (360)
T d2jbwa1 103 SPPAERHELVV-DGIPMPVYVRIPEG---PGPHPAVIMLGGLESTKEE--SF-QMENLVLDRGMATATFDGPGQGEMFEY 175 (360)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEECCSS---SCCEEEEEEECCSSCCTTT--TH-HHHHHHHHTTCEEEEECCTTSGGGTTT
T ss_pred CCCeEEeecCc-CCcccceEEEecCC---CCCceEEEEeCCCCccHHH--HH-HHHHHHHhcCCEEEEEccccccccCcc
Confidence 44688888885 78999999999976 4789999999996544322 22 345667778999999999996654311
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccccc--
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI-- 613 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~-- 613 (734)
. ........++.+++++|.....+|++||+|+|+|+||++++.++...|. ++++|+..|+.++........
T Consensus 176 ~------~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pr-i~a~V~~~~~~~~~~~~~~~~~~ 248 (360)
T d2jbwa1 176 K------RIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLT 248 (360)
T ss_dssp C------CSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCSTTGGGSCHHH
T ss_pred c------cccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCCC-cceEEEEcccccHHHHhhhhhhh
Confidence 1 1111223356678899999989999999999999999999999998884 699999999887643321110
Q ss_pred CcccccccCCCCCHHH-HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 614 AYYSESEFGSPNNKTH-FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 614 ~~~~~~~~g~~~~~~~-~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
...|....+.+...+. ......++....+.+ +++| +||+||++|. ||+.++.++++++... .++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-~Lii~G~~D~-vp~~~~~~l~~~~~~~---------~~~ 313 (360)
T d2jbwa1 249 KESWKYVSKVDTLEEARLHVHAALETRDVLSQ----IACP-TYILHGVHDE-VPLSFVDTVLELVPAE---------HLN 313 (360)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGG----CCSC-EEEEEETTSS-SCTHHHHHHHHHSCGG---------GEE
T ss_pred hHHHHHhccCCchHHHHHHHHhhcchhhhHhh----CCCC-EEEEEeCCCC-cCHHHHHHHHHhcCCC---------CeE
Confidence 0011111133222222 222333444444444 7788 9999999997 7999999998877543 567
Q ss_pred EEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 693 LRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 693 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
++++++++|...... .+....+.+||.++|.
T Consensus 314 l~~~~~g~H~~~~~~---~~~~~~i~dWl~~~L~ 344 (360)
T d2jbwa1 314 LVVEKDGDHCCHNLG---IRPRLEMADWLYDVLV 344 (360)
T ss_dssp EEEETTCCGGGGGGT---THHHHHHHHHHHHHHT
T ss_pred EEEECCCCcCCCcCh---HHHHHHHHHHHHHHhc
Confidence 889999999643222 3455668999999984
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.87 E-value=1.1e-21 Score=201.50 Aligned_cols=246 Identities=16% Similarity=0.101 Sum_probs=158.9
Q ss_pred CCCCCceEEEEEEEcCCCc-EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccHHHHHHHHhcCeEEEEEecccC
Q psy4818 452 FEPTLFQTKQVYFRSKDGT-RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSISRCMFLRHFNGIYAIPNIRGG 529 (734)
Q Consensus 452 ~~~~~~~~~~~~~~s~dg~-~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~ 529 (734)
.....+..+++.+++.||. .|++.+|+|++. +++.|+|||+|||....... .+......++++.||+|+.+|||+.
T Consensus 43 ~~~~~v~~~~~~~~~~~g~~~i~~~~~~P~~~--~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~ 120 (317)
T d1lzla_ 43 LSFDGVSLRELSAPGLDGDPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLA 120 (317)
T ss_dssp CCCTTEEEEEEEECCSTTCCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCT
T ss_pred CCCCCceEEEEEEecCCCCceEEEEEECCCCC--CCCCcEEEEecCcccccccccccchHHHhHHhhcCCcccccccccc
Confidence 3445667899999999985 699999999863 56889999999984333222 3333344555556999999999997
Q ss_pred CCCCchhhhccccccCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCc
Q psy4818 530 GELGEDWHNAGRLLKKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGA 602 (734)
Q Consensus 530 ~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~ 602 (734)
++.. ....++|+.++++|+.++ .-+|++||+|+|+|+||++++.++.+.++ .....+...+.
T Consensus 121 pe~~-----------~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~ 189 (317)
T d1lzla_ 121 PETT-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPE 189 (317)
T ss_dssp TTSC-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCC
T ss_pred cccc-----------ccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccccccccccc
Confidence 6542 123367899999888765 23799999999999999999998865322 12333333332
Q ss_pred chhc-ccc---ccccCcccc---------cccC----CCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCC
Q psy4818 603 LDML-RFN---KFTIAYYSE---------SEFG----SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRV 665 (734)
Q Consensus 603 ~d~~-~~~---~~~~~~~~~---------~~~g----~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v 665 (734)
.+.. ... .+.....+. ..++ .+.++.. ....+|...... ...||+||++|++|.
T Consensus 190 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~pp~li~~g~~D~-- 260 (317)
T d1lzla_ 190 LDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDV---SIYAAPSRATDL----TGLPPTYLSTMELDP-- 260 (317)
T ss_dssp CCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCC---CTTTCGGGCSCC----TTCCCEEEEEETTCT--
T ss_pred ccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchh---ccccCchhhhhc----cCCCCeEEEECCCCC--
Confidence 2211 100 000000000 0000 0000000 000112211111 345779999999994
Q ss_pred CChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC--chHHhHHHHHHHHHHHHHHcC
Q psy4818 666 PPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT--PLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 666 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~ 726 (734)
...++++|+++|+++ |+++++++|++++|+|.. ......+...++++||.++|+
T Consensus 261 l~~~~~~~~~~L~~~-------G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 261 LRDEGIEYALRLLQA-------GVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp THHHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-------CCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 567999999999999 999999999999998852 112224566778999999985
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.85 E-value=7.2e-21 Score=198.16 Aligned_cols=252 Identities=14% Similarity=0.083 Sum_probs=163.8
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc---cccHHHHHHHHhcCeEEEEEecccCC
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP---TFSISRCMFLRHFNGIYAIPNIRGGG 530 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~rG~~ 530 (734)
...+..+..++++.||..|++.+|+|++. +++.|+|||+|||....... .+. .++..++++|++|+.+|||.++
T Consensus 74 ~~~v~~~~~~i~~~dg~~i~~~iy~P~~~--~~~~Pviv~~HGGG~~~gs~~~~~~~-~~~~~la~~g~~VvsvdYRla~ 150 (358)
T d1jkma_ 74 RDDVETSTETILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHR-RWCTDLAAAGSVVVMVDFRNAW 150 (358)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHH-HHHHHHHHTTCEEEEEECCCSE
T ss_pred CCCccEEEEEEeCCCCCEEEEEEEecCCC--CCCCCeEEEecCCeeeeccccccccc-hHHHHHHhhhheeeeeeecccc
Confidence 45677888999999999999999999874 56889999999994332221 122 2446667789999999999974
Q ss_pred CCCchhhhccccccCCCchhHHHHHHHHHHHcC-CCCCCcEEEEEcChHHHHHHHHHhc-----CCCceeEEEEcCCcch
Q psy4818 531 ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK-YTKPKYITIMGGSNGGLLVGACLNQ-----RPELYGAALILVGALD 604 (734)
Q Consensus 531 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~~~~~~~~-----~p~~~~a~v~~~~~~d 604 (734)
+... .......++|+.++++||.++. ..|++||+|+|.|+||+|++.++.. .+..+.+.++.+|+++
T Consensus 151 ~~~p-------e~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~ 223 (358)
T d1jkma_ 151 TAEG-------HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYIS 223 (358)
T ss_dssp ETTE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCC
T ss_pred cccc-------cCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceec
Confidence 3321 1123346899999999998763 3688999999999999999887643 2335688899999876
Q ss_pred hcccccc----ccCcccccccCCCCCHHHHHH-HHhC--------CccCCCCCCC--CCccCCcEEEEecCCCCCCCChH
Q psy4818 605 MLRFNKF----TIAYYSESEFGSPNNKTHFHN-LLSY--------SPLHNIKVPP--NNTQYPATLVLTGDHDDRVPPLH 669 (734)
Q Consensus 605 ~~~~~~~----~~~~~~~~~~g~~~~~~~~~~-~~~~--------sp~~~~~~p~--~~~~~P~~Li~~g~~D~~v~~~~ 669 (734)
....... .....+....+.......... +..+ +|+.....+. .....||+||++|+.|.. ..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l--~~e 301 (358)
T d1jkma_ 224 GGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPL--RDE 301 (358)
T ss_dssp CCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTT--HHH
T ss_pred cccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCC--HHH
Confidence 5422110 000000000011111111111 1111 1221110000 012467899999999954 479
Q ss_pred HHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC-----chHHhHHHHHHHHHHHHHH
Q psy4818 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT-----PLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 670 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~-----~~~~~~~~~~~~~~fl~~~ 724 (734)
+.+|+++|+++ |+++++++|++++|+|.. ......+....+..|+..+
T Consensus 302 ~~~~~~~L~~a-------Gv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 302 GIAFARRLARA-------GVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHHHT-------TCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------CCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999998631 1122223455677788764
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.85 E-value=2.4e-21 Score=189.11 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=149.0
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
.|+|+|++.||.++.+++..|.+ ++.|+||++|+++|... +...+++.|+++||.|+++|+.|+++.+..+..
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~----~~~P~vl~~h~~~G~~~---~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~ 75 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK----APAPVIVIAQEIFGVNA---FMRETVSWLVDQGYAAVCPDLYARQAPGTALDP 75 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS----SSEEEEEEECCTTBSCH---HHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCT
T ss_pred ceEEEEEcCCCCEEEEEEECCCC----CCceEEEEeCCCCCCCH---HHHHHHHHHHhcCCcceeeeeccCCCcCcccCh
Confidence 46678999999999999999974 68999999998776442 122356677888999999999887666543221
Q ss_pred cccc-----------ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcc
Q psy4818 539 AGRL-----------LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR 607 (734)
Q Consensus 539 ~~~~-----------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~ 607 (734)
.... ........|+.++++++.+.+. +.+||+++|+|+||.++..++.. +. +.++++..|..-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~~--- 149 (233)
T d1dina_ 76 QDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVGL--- 149 (233)
T ss_dssp TSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSCG---
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceecccccccc---
Confidence 1000 0112346788999999987765 55899999999999999998876 43 455555443210
Q ss_pred ccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCC
Q psy4818 608 FNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 687 (734)
Q Consensus 608 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~ 687 (734)
. +++..+.. ++.| +|++||++|++||.++..++.+.++ .
T Consensus 150 ------------------~----------~~~~~~~~----i~~P-vl~~~G~~D~~vp~e~~~~~~~~~~-~------- 188 (233)
T d1dina_ 150 ------------------E----------KQLNKVPE----VKHP-ALFHMGGQDHFVPAPSRQLITEGFG-A------- 188 (233)
T ss_dssp ------------------G----------GGGGGGGG----CCSC-EEEEEETTCTTSCHHHHHHHHHHHT-T-------
T ss_pred ------------------c----------cchhhhhc----cCCc-ceeeecccccCCCHHHHHHHHHHHh-c-------
Confidence 0 01111122 5556 9999999999999888777766553 4
Q ss_pred CCcEEEEEeCCCCCCCCCch------HHhHHHHHHHHHHHHH
Q psy4818 688 KNPLLLRVEQDAGHGQGTPL------MKSIEEMTDIYVFLMK 723 (734)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~~~------~~~~~~~~~~~~fl~~ 723 (734)
++++++++|||++|+|..+. ....+.+.++++||.+
T Consensus 189 ~~~~~~~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 189 NPLLQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp CTTEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 67899999999999985321 1224557788899864
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.85 E-value=1.1e-20 Score=187.44 Aligned_cols=208 Identities=14% Similarity=-0.005 Sum_probs=151.7
Q ss_pred CceEEEEEEEcCCCc-EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 456 LFQTKQVYFRSKDGT-RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 456 ~~~~~~~~~~s~dg~-~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
.+....+++....+. ...+.|++|.+. .+++.|+||++||+.+.... +. .++..|+++||+|+++|++|..+...
T Consensus 20 p~~~~~~~~~~~~~~g~~~~~ly~P~~~-~~g~~P~Vv~~HG~~g~~~~--~~-~~a~~lA~~Gy~V~~~d~~~~~~~~~ 95 (260)
T d1jfra_ 20 PYATSQTSVSSLVASGFGGGTIYYPTST-ADGTFGAVVISPGFTAYQSS--IA-WLGPRLASQGFVVFTIDTNTTLDQPD 95 (260)
T ss_dssp SSCEEEEEECTTTCSSSCCEEEEEESCC-TTCCEEEEEEECCTTCCGGG--TT-THHHHHHTTTCEEEEECCSSTTCCHH
T ss_pred CcceeEEEeccCCcCcccCEEEEEcCCC-CCCCccEEEEECCCCCCHHH--HH-HHHHHHHhCCCEEEEEeeCCCcCCch
Confidence 345555555433221 245789999863 35688999999997655432 22 35677889999999999998554321
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHHc----CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccc
Q psy4818 535 DWHNAGRLLKKQNCFDDFQAAAEYMINK----KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNK 610 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~ 610 (734)
....|+.+++++|.+. +.+|++||+++|+|+||.+++.++...+ .++|+|+.+|....
T Consensus 96 ------------~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~----- 157 (260)
T d1jfra_ 96 ------------SRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTD----- 157 (260)
T ss_dssp ------------HHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSC-----
T ss_pred ------------hhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeeccccc-----
Confidence 1246888899998875 5689999999999999999999999877 56888887764311
Q ss_pred cccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCc
Q psy4818 611 FTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690 (734)
Q Consensus 611 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~ 690 (734)
..... ++.| +|++||++|.+||+.+..+++.++... +.+
T Consensus 158 -----------------------------~~~~~----~~~P-~l~i~G~~D~~vp~~~~~~~~~~~~~~-------~~~ 196 (260)
T d1jfra_ 158 -----------------------------KTWPE----LRTP-TLVVGADGDTVAPVATHSKPFYESLPG-------SLD 196 (260)
T ss_dssp -----------------------------CCCTT----CCSC-EEEEEETTCSSSCTTTTHHHHHHHSCT-------TSC
T ss_pred -----------------------------ccccc----cccc-eeEEecCCCCCCCHHHHHHHHHHhccc-------CCC
Confidence 01112 4556 999999999999998766655555444 778
Q ss_pred EEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 691 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
.+++++++++|++....+ .+....+++||.++|..+
T Consensus 197 ~~~~~i~ga~H~~~~~~~--~~~~~~~~~wl~~~L~~d 232 (260)
T d1jfra_ 197 KAYLELRGASHFTPNTSD--TTIAKYSISWLKRFIDSD 232 (260)
T ss_dssp EEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSCC
T ss_pred EEEEEECCCccCCCCCCh--HHHHHHHHHHHHHHhcCc
Confidence 999999999999865544 345566899999999755
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.85 E-value=2.1e-20 Score=196.05 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=173.1
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCC--CCC--c-CCcccc---HHHHHHHHhcCeEEEEEe
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG--YGV--S-VLPTFS---ISRCMFLRHFNGIYAIPN 525 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg--~~~--~-~~~~~~---~~~~~~l~~~G~~v~~~~ 525 (734)
...+..+.+.++.+||++|.+.|++|++ .++.|+||..|+- .+. . ..+... ....++|+++||+|+++|
T Consensus 19 ~~~~~~~~v~i~~rDG~~L~~~v~~P~~---~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 95 (381)
T d1mpxa2 19 SNDYIKREVMIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 95 (381)
T ss_dssp TCSEEEEEEEEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred ccCceEEEEEEECCCCCEEEEEEEEeCC---CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence 3466778899999999999999999987 5789999998752 111 1 111110 112356778899999999
Q ss_pred cccCCCCCchhhhccc-----cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 526 IRGGGELGEDWHNAGR-----LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 526 ~rG~~~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
+||.|+.+..|...+. ......+.+|+.++++||.++..++.+||+++|+|+||+++++++++.|..++|+|+.+
T Consensus 96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~ 175 (381)
T d1mpxa2 96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 175 (381)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence 9998877665543221 22334678999999999999988899999999999999999999999999999999999
Q ss_pred CcchhccccccccC-cc-------ccc---ccCCCC-----CHH------------------------HH----------
Q psy4818 601 GALDMLRFNKFTIA-YY-------SES---EFGSPN-----NKT------------------------HF---------- 630 (734)
Q Consensus 601 ~~~d~~~~~~~~~~-~~-------~~~---~~g~~~-----~~~------------------------~~---------- 630 (734)
|+.|.........+ .. |.. ..+.+. ..+ .+
T Consensus 176 ~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 255 (381)
T d1mpxa2 176 PMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYD 255 (381)
T ss_dssp CCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSC
T ss_pred cccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCcc
Confidence 99987643211100 00 000 000000 000 00
Q ss_pred HHHHhCCccC--CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC---
Q psy4818 631 HNLLSYSPLH--NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT--- 705 (734)
Q Consensus 631 ~~~~~~sp~~--~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~--- 705 (734)
..+...++.. +... ++.| +|+++|..|..+.. .+...++.++.. ...+.+..|++-|. +|+...
T Consensus 256 ~~w~~~s~~~~~~~~~----i~vP-~l~i~G~~d~~~~~-~~~~~~~~~~~~----~~~~~~~~LviGPw-~H~~~~~~~ 324 (381)
T d1mpxa2 256 AFWQEQALDKVMARTP----LKVP-TMWLQGLWDQEDMW-GAIHSYAAMEPR----DKRNTLNYLVMGPW-RHSQVNYDG 324 (381)
T ss_dssp HHHHTTCHHHHHHTSC----CCSC-EEEEEETTCSSCSS-HHHHHHHHHGGG----CTTSSSEEEEEESC-CTTGGGSCC
T ss_pred chhhhcCchhhhhhcc----ccCc-eEEEeccccCCccc-cHHHHHHHHHHh----ccccCCceEEEecC-cCCCCccCC
Confidence 1112223322 1222 6777 99999999976544 466777777665 22367888998875 674210
Q ss_pred ---------chHHhHHHHHHHHHHHHHHcCC-CCCCCC
Q psy4818 706 ---------PLMKSIEEMTDIYVFLMKSLGL-KYYPDM 733 (734)
Q Consensus 706 ---------~~~~~~~~~~~~~~fl~~~l~~-~~~~~~ 733 (734)
...........+++||+++|+. +..+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ 362 (381)
T d1mpxa2 325 SALGALNFEGDTARQFRHDVLRPFFDQYLVDGAPKADT 362 (381)
T ss_dssp SEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCC
T ss_pred CcCCccccccchhhhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 1112233344578999999975 333443
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=5.8e-21 Score=195.11 Aligned_cols=229 Identities=16% Similarity=0.131 Sum_probs=159.1
Q ss_pred ceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 457 FQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 457 ~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
..++.+++++.+| .|++.+|+|+. +.|+|||+|||..... ...+...+..++++.|++|+.+|||++.++.
T Consensus 54 ~~~~~~~i~~~~g-~i~~~iy~P~~-----~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~~-- 125 (311)
T d1jjia_ 54 ERVEDRTIKGRNG-DIRVRVYQQKP-----DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK-- 125 (311)
T ss_dssp SEEEEEEEEETTE-EEEEEEEESSS-----SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC--
T ss_pred ceEEEEEEeCCCC-cEEEEEEcCCC-----CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccccccc--
Confidence 3678888988887 79999999863 4699999999844332 2333333445556679999999999987653
Q ss_pred hhhccccccCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc----CCCceeEEEEcCCcchhccc
Q psy4818 536 WHNAGRLLKKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ----RPELYGAALILVGALDMLRF 608 (734)
Q Consensus 536 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~----~p~~~~a~v~~~~~~d~~~~ 608 (734)
....++|+.++++|+.++ ..+|++||+|+|.|+||++++.++.+ ......+.++.+|.+|+...
T Consensus 126 ---------~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~ 196 (311)
T d1jjia_ 126 ---------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAP 196 (311)
T ss_dssp ---------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSC
T ss_pred ---------cchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeeccC
Confidence 223478999999999876 35899999999999999999887643 23367888999998886532
Q ss_pred cccccCcccccccC--CC-CCHHHHHH-------------HHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHH
Q psy4818 609 NKFTIAYYSESEFG--SP-NNKTHFHN-------------LLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYK 672 (734)
Q Consensus 609 ~~~~~~~~~~~~~g--~~-~~~~~~~~-------------~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~ 672 (734)
... ..+++ .+ ........ -...||+.... ...||+||++|+.|.. ..++..
T Consensus 197 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-----~~~pP~li~~g~~D~l--~d~~~~ 263 (311)
T d1jjia_ 197 TPS------LLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADL-----ENLPPALIITAEYDPL--RDEGEV 263 (311)
T ss_dssp CHH------HHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCC-----TTCCCEEEEEEEECTT--HHHHHH
T ss_pred ccc------ccccccccccccHHHhhhhhhhcccccccccccccchhhccc-----ccCCCEEEEEcCCCCC--hHHHHH
Confidence 210 00010 00 01110000 01236665433 3567799999999964 469999
Q ss_pred HHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHH
Q psy4818 673 FIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLM 722 (734)
Q Consensus 673 ~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~ 722 (734)
|+++|+++ |+++++++|++++|+|... ..+..+...++.+||.
T Consensus 264 ~~~~L~~~-------Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 264 FGQMLRRA-------GVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp HHHHHHHT-------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-------CCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 99999999 9999999999999987421 1223456666777763
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.84 E-value=3.7e-20 Score=176.28 Aligned_cols=207 Identities=16% Similarity=0.103 Sum_probs=146.9
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecC--CCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYG--GYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hG--g~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~ 536 (734)
.+.+++...+| +|.+.+..|+.. ...+.+++|++|+ +.+.++...+...+++.|+++||.|+.+|+||.|+....+
T Consensus 8 ~~~l~i~gp~G-~l~~~~~~p~~~-~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~~ 85 (218)
T d2fuka1 8 SAALTLDGPVG-PLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSF 85 (218)
T ss_dssp CEEEEEEETTE-EEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSCC
T ss_pred ceEEEEeCCCc-cEEEEEEcCCCC-CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCcc
Confidence 46778888888 699999988652 2334566677763 3444444333334567788899999999999966544322
Q ss_pred hhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcc
Q psy4818 537 HNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYY 616 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 616 (734)
.......+|+.++++|+.++. +.++++++|+|+||.+++.++.+.+ .+++|+.+|..+...+
T Consensus 86 ------~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~~--~~~lil~ap~~~~~~~-------- 147 (218)
T d2fuka1 86 ------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAALE--PQVLISIAPPAGRWDF-------- 147 (218)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHC--CSEEEEESCCBTTBCC--------
T ss_pred ------CcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhcccc--cceEEEeCCcccchhh--------
Confidence 223345789999999998863 5578999999999999998887633 4688888876532111
Q ss_pred cccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEe
Q psy4818 617 SESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVE 696 (734)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 696 (734)
.+ . . ..+| +|++||++|..||++++.++++++ ..+.+++++
T Consensus 148 --------------------~~---~-~----~~~P-~Lvi~G~~D~~vp~~~~~~l~~~~----------~~~~~l~~i 188 (218)
T d2fuka1 148 --------------------SD---V-Q----PPAQ-WLVIQGDADEIVDPQAVYDWLETL----------EQQPTLVRM 188 (218)
T ss_dssp --------------------TT---C-C----CCSS-EEEEEETTCSSSCHHHHHHHHTTC----------SSCCEEEEE
T ss_pred --------------------hc---c-c----cccc-eeeEecCCCcCcCHHHHHHHHHHc----------cCCceEEEe
Confidence 00 0 1 3345 999999999999999988876654 345678999
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 697 QDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 697 ~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
++++|+|..... +....+.+|+.++|..
T Consensus 189 ~ga~H~f~~~~~---~l~~~~~~~v~~~l~~ 216 (218)
T d2fuka1 189 PDTSHFFHRKLI---DLRGALQHGVRRWLPA 216 (218)
T ss_dssp TTCCTTCTTCHH---HHHHHHHHHHGGGCSS
T ss_pred CCCCCCCCCCHH---HHHHHHHHHHHHhcCC
Confidence 999999975433 3455678899988753
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.84 E-value=1.3e-20 Score=192.56 Aligned_cols=237 Identities=15% Similarity=0.109 Sum_probs=157.6
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcC-CccccHHHHHHHHhcCeEEEEEecccCCCCCchh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~ 536 (734)
.++.++++. +|.+|.+.+|+|++. +++.|+|||+|||..... ...+......++.+.|+.|+.+|||...+..
T Consensus 45 ~~~~~~~~~-~g~~i~~~~y~P~~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~~--- 118 (308)
T d1u4na_ 45 EVREFDMDL-PGRTLKVRMYRPEGV--EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHK--- 118 (308)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC---
T ss_pred cEEEEEEec-CCceEEEEEEecccc--CCCCCEEEEEecCeeeeeccccccchhhhhhhcccccccccccccccccc---
Confidence 567777765 788999999999875 467999999999843332 2333333445555545678899999866532
Q ss_pred hhccccccCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhcCCC----ceeEEEEcCCcchhcccc
Q psy4818 537 HNAGRLLKKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQRPE----LYGAALILVGALDMLRFN 609 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~~~a~v~~~~~~d~~~~~ 609 (734)
.....+|+.++++|+.++. .+|++||+|+|+|+||+++++++....+ ...+..+..+..+.....
T Consensus 119 --------~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (308)
T d1u4na_ 119 --------FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAH 190 (308)
T ss_dssp --------TTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTTS
T ss_pred --------cccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccccccccccccccc
Confidence 2334689999999998764 5899999999999999999998765432 235555566555433221
Q ss_pred ccccCcccccccCCC--CCHH-HHHHH------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHH
Q psy4818 610 KFTIAYYSESEFGSP--NNKT-HFHNL------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674 (734)
Q Consensus 610 ~~~~~~~~~~~~g~~--~~~~-~~~~~------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~ 674 (734)
.... ..+.... .... ..... ...++...... ...||+||++|+.|..+ .+++.|+
T Consensus 191 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~----~~~Pp~li~~g~~D~l~--~~~~~~~ 260 (308)
T d1u4na_ 191 PPAS----IEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDL----SGLPPAYIATAQYDPLR--DVGKLYA 260 (308)
T ss_dssp CCHH----HHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCC----TTCCCEEEEEEEECTTH--HHHHHHH
T ss_pred ccch----hhhccccccccchhhhhhhhcccCccccccchhhhhhhchhh----cCCCCeeEEecCcCCch--HHHHHHH
Confidence 1000 0000000 0000 00000 01223322222 56678999999999654 6899999
Q ss_pred HHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---hHHhHHHHHHHHHHHHHHc
Q psy4818 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP---LMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 675 ~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l 725 (734)
++|+++ |+++++++|++++|+|... .....+.+.++.+||.+.|
T Consensus 261 ~~L~~~-------G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 261 EALNKA-------GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHT-------TCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHC-------CCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999 9999999999999987431 1223567778899998876
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.82 E-value=1.7e-20 Score=185.37 Aligned_cols=196 Identities=12% Similarity=0.082 Sum_probs=139.5
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcc
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAG 540 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~ 540 (734)
.+.|-..+.. ..-||+|++ .+.|+||++|||+...........++..|+++||+|+.+|||.+++.. |
T Consensus 41 dv~Yg~~~~~--~lDiy~P~~----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~--~---- 108 (261)
T d2pbla1 41 NLSYGEGDRH--KFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR--I---- 108 (261)
T ss_dssp EEESSSSTTC--EEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC--H----
T ss_pred CcCCCCCcCe--EEEEeccCC----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeeccccccccccc--C----
Confidence 4545333333 345677865 468999999999754433322223456677789999999999876532 1
Q ss_pred ccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCC------CceeEEEEcCCcchhccccccccC
Q psy4818 541 RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP------ELYGAALILVGALDMLRFNKFTIA 614 (734)
Q Consensus 541 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p------~~~~a~v~~~~~~d~~~~~~~~~~ 614 (734)
...++|+.++++|+.++. ++||+|+|+|+||+++++++.... ..++++++.+|+.|+.......
T Consensus 109 -----p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 178 (261)
T d2pbla1 109 -----SEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS-- 178 (261)
T ss_dssp -----HHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST--
T ss_pred -----chhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhh--
Confidence 234789999999998874 589999999999999998876542 2578999999998875432211
Q ss_pred cccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEE
Q psy4818 615 YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLR 694 (734)
Q Consensus 615 ~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 694 (734)
....++ .++ +...+.||+.++.. .. ||+||+||++|+.|+..|+.+++++|+. +.+
T Consensus 179 --~~~~~~--~~~---~~~~~~SP~~~~~~----~~-~P~li~~G~~D~~~~~~qs~~~~~~l~~------------~~~ 234 (261)
T d2pbla1 179 --MNEKFK--MDA---DAAIAESPVEMQNR----YD-AKVTVWVGGAERPAFLDQAIWLVEAWDA------------DHV 234 (261)
T ss_dssp --THHHHC--CCH---HHHHHTCGGGCCCC----CS-CEEEEEEETTSCHHHHHHHHHHHHHHTC------------EEE
T ss_pred --hccccc--CCH---HHHHHhCchhhccc----CC-CeEEEEEecCCCchHHHHHHHHHHHhCC------------Cce
Confidence 111122 122 34567899999875 44 4599999999999999999999998853 356
Q ss_pred EeCCCCCC
Q psy4818 695 VEQDAGHG 702 (734)
Q Consensus 695 ~~~~~gH~ 702 (734)
.+++++|+
T Consensus 235 ~~~~~~HF 242 (261)
T d2pbla1 235 IAFEKHHF 242 (261)
T ss_dssp EETTCCTT
T ss_pred EeCCCCch
Confidence 78999993
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.82 E-value=6e-20 Score=186.39 Aligned_cols=235 Identities=13% Similarity=0.119 Sum_probs=150.6
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCc-hhhhc
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE-DWHNA 539 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~-~~~~~ 539 (734)
.-.++..||..|++|.+.|++. ...+.|+||++||..+.. ..|. .++.+|+++||.|+.+|+||++|... .+...
T Consensus 6 ~h~~~~~dg~~l~~w~~~p~~~-~~~~~~~Vvi~HG~~~~~--~~~~-~~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~~~ 81 (302)
T d1thta_ 6 AHVLRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARRM--DHFA-GLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEF 81 (302)
T ss_dssp EEEEEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGGG--GGGH-HHHHHHHTTTCCEEEECCCBCC--------CC
T ss_pred eeEEEcCCCCEEEEEEecCcCC-CCCCCCEEEEeCCCcchH--HHHH-HHHHHHHHCCCEEEEecCCCCCCCCCCcccCC
Confidence 3446778999999999999874 345788999999964433 2343 46678888999999999999644332 11111
Q ss_pred cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcc---
Q psy4818 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYY--- 616 (734)
Q Consensus 540 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~--- 616 (734)
. .....+|+.+++++|.++ ++++++|+|+||||.+++.++... .++++|+.+|+.++..+........
T Consensus 82 ~----~~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~~--~v~~li~~~g~~~~~~~~~~~~~~~~~~ 152 (302)
T d1thta_ 82 T----MTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISDL--ELSFLITAVGVVNLRDTLEKALGFDYLS 152 (302)
T ss_dssp C----HHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTTS--CCSEEEEESCCSCHHHHHHHHHSSCGGG
T ss_pred C----HHHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhccc--ccceeEeecccccHHHHHHHHHhhccch
Confidence 1 112367888899999776 456899999999999998887643 3689999999887654321111000
Q ss_pred ----cccc---c-CCCCCHHHH-HHHHhC------CccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q psy4818 617 ----SESE---F-GSPNNKTHF-HNLLSY------SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681 (734)
Q Consensus 617 ----~~~~---~-g~~~~~~~~-~~~~~~------sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~ 681 (734)
...+ + +.......+ ...... ++...+.. ++.| +|++||++|..|++.++.++++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P-vLii~G~~D~~V~~~~~~~l~~~i~--- 224 (302)
T d1thta_ 153 LPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVAN----TSVP-LIAFTANNDDWVKQEEVYDMLAHIR--- 224 (302)
T ss_dssp SCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTT----CCSC-EEEEEETTCTTSCHHHHHHHHTTCT---
T ss_pred hhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhh----cCCC-EEEEEeCCCCccCHHHHHHHHHhCC---
Confidence 0000 0 000000111 111111 12233443 6777 9999999999999999998888774
Q ss_pred CCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 682 GSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+...++.+++|++|.+..........++.+..++.
T Consensus 225 ------s~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~ 259 (302)
T d1thta_ 225 ------TGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAI 259 (302)
T ss_dssp ------TCCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHH
T ss_pred ------CCCceEEEecCCCcccccChHHHHHHHHHHHHHHh
Confidence 33678999999999987654432334444444443
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=8.5e-20 Score=178.87 Aligned_cols=227 Identities=15% Similarity=0.053 Sum_probs=146.1
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 537 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~ 537 (734)
..|++++ .| ++.....|+ ++.|+||++||..+... .|. .++..|+++||+|+++|+||+|+....+.
T Consensus 4 ~~~~~~l---~g--~~~~~~~p~-----~~~~~vl~lHG~~~~~~--~~~-~~~~~la~~G~~V~~~D~~g~g~s~~~~~ 70 (238)
T d1ufoa_ 4 RTERLTL---AG--LSVLARIPE-----APKALLLALHGLQGSKE--HIL-ALLPGYAERGFLLLAFDAPRHGEREGPPP 70 (238)
T ss_dssp EEEEEEE---TT--EEEEEEEES-----SCCEEEEEECCTTCCHH--HHH-HTSTTTGGGTEEEEECCCTTSTTSSCCCC
T ss_pred EEEEEEE---CC--EEEEecCCC-----CCCeEEEEeCCCCCCHH--HHH-HHHHHHHHCCCEEEEecCCCCCCCccccc
Confidence 4566655 34 455555564 46799999999766543 222 23455677899999999999765432221
Q ss_pred hccccccCCC---chhH-HHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccccc
Q psy4818 538 NAGRLLKKQN---CFDD-FQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI 613 (734)
Q Consensus 538 ~~~~~~~~~~---~~~D-~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~ 613 (734)
.......... ...+ +.++...+...+.+++.+++++|+|+||++++.++.++|+. +++++..+..+....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~-~~~~~~~~~~~~~~~----- 144 (238)
T d1ufoa_ 71 SSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRP-RGVLAFIGSGFPMKL----- 144 (238)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCC-SCEEEESCCSSCCCC-----
T ss_pred ccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcch-hheeeeeeecccccc-----
Confidence 1111000001 1112 22223333334557888999999999999999999999876 455554444332211
Q ss_pred CcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCC--cE
Q psy4818 614 AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN--PL 691 (734)
Q Consensus 614 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~--~~ 691 (734)
.+...+..+. ...+...++..+... ..+.| +||+||++|..||++++.+++++|++. +. .+
T Consensus 145 -----~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~P-~li~~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~ 207 (238)
T d1ufoa_ 145 -----PQGQVVEDPG-VLALYQAPPATRGEA---YGGVP-LLHLHGSRDHIVPLARMEKTLEALRPH-------YPEGRL 207 (238)
T ss_dssp -----CTTCCCCCHH-HHHHHHSCGGGCGGG---GTTCC-EEEEEETTCTTTTHHHHHHHHHHHGGG-------CTTCCE
T ss_pred -----cccccccccc-ccchhhhhhhhhhhh---hcCCC-eEEEEcCCCCccCHHHHHHHHHHHHhc-------CCCceE
Confidence 1122223333 334456677766554 24556 999999999999999999999999988 54 47
Q ss_pred EEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcC
Q psy4818 692 LLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 726 (734)
.+.+++|+||.+.. +....+.+||.++|.
T Consensus 208 ~~~~~~g~gH~~~~------~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 208 ARFVEEGAGHTLTP------LMARVGLAFLEHWLE 236 (238)
T ss_dssp EEEEETTCCSSCCH------HHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCccCH------HHHHHHHHHHHHHhc
Confidence 88999999998752 334567899999874
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=1.7e-19 Score=182.32 Aligned_cols=253 Identities=13% Similarity=0.066 Sum_probs=174.8
Q ss_pred CCceEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH--HHHHHHHhcCeEEEEEecccCCC
Q psy4818 455 TLFQTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI--SRCMFLRHFNGIYAIPNIRGGGE 531 (734)
Q Consensus 455 ~~~~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~~~ 531 (734)
..+.++.+++.|. .|.+|++.|+.| .+++|+|+++||+.+......|.. ...+++++.|+++++++..+++.
T Consensus 5 ~~~~v~~~~~~s~~~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (288)
T d1sfra_ 5 PGLPVEYLQVPSPSMGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSF 79 (288)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCT
T ss_pred CCCEEEEEEEECCCCCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCC
Confidence 3445677777764 678888888765 368999999999765443333322 24578888899999999988765
Q ss_pred CCchhhhcc-ccccCCCchhHH--HHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 532 LGEDWHNAG-RLLKKQNCFDDF--QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 532 ~g~~~~~~~-~~~~~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
++..+.... ........++++ ...+.+|.++..+|++|++|+|+|+||++++.++.++|++|+++++.+|.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~ 159 (288)
T d1sfra_ 80 YSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQA 159 (288)
T ss_dssp TCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTST
T ss_pred CccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccccc
Confidence 554433321 112223344444 34678888888899999999999999999999999999999999999999876543
Q ss_pred cccccC---------cccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC------------
Q psy4818 609 NKFTIA---------YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP------------ 667 (734)
Q Consensus 609 ~~~~~~---------~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~------------ 667 (734)
...... ......+|.+.. ..+.+++|+.++... ..+.+++++.+|..|..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~~--~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~ 233 (288)
T d1sfra_ 160 MGPTLIGLAMGDAGGYKASDMWGPKED----PAWQRNDPLLNVGKL--IANNTRVWVYCGNGKPSDLGGNNLPAKFLEGF 233 (288)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTTS----THHHHSCTTTTHHHH--HHHTCEEEEECCCSCCBTTBCCSHHHHHHHHH
T ss_pred ccchhhhhhhhhcccccHhhhcCCcch----hhhHhcCHHHHHHHh--hhcCCeEEEEeCCCCCCCccccccccchhHHH
Confidence 211100 000111233332 234578888876531 01223489999999987774
Q ss_pred --hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCC-CCCCCCchHHhHHHHHHHHHHHHHHcCCCC
Q psy4818 668 --LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDA-GHGQGTPLMKSIEEMTDIYVFLMKSLGLKY 729 (734)
Q Consensus 668 --~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~-gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 729 (734)
.+++++.++|+++ |.+..+..++++ +|.+.. ..+...+.+.||.+.||..+
T Consensus 234 ~~~~~~~l~~~l~~~-------g~~~~~~~~~~~G~H~w~~----w~~~l~~~l~~l~~alg~~~ 287 (288)
T d1sfra_ 234 VRTSNIKFQDAYNAG-------GGHNGVFDFPDSGTHSWEY----WGAQLNAMKPDLQRALGATP 287 (288)
T ss_dssp HHHHHHHHHHHHHHT-------TCCSEEEECCSCCCSSHHH----HHHHHHHTHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHC-------CCCeEEEEECCCCccChhH----HHHHHHHHHHHHHHhcCCCC
Confidence 5678899999998 888888888875 597632 13445667999999998653
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.80 E-value=9.6e-19 Score=184.90 Aligned_cols=256 Identities=13% Similarity=0.090 Sum_probs=176.4
Q ss_pred CCCCCCCceEEEEEEEcC-----CCc--EEeEEEEEeccccCCCCCcEEEEecCCCCC----------------------
Q psy4818 450 PEFEPTLFQTKQVYFRSK-----DGT--RVPMYIIHRVGALRNRRNPVIIYGYGGYGV---------------------- 500 (734)
Q Consensus 450 ~~~~~~~~~~~~~~~~s~-----dg~--~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~---------------------- 500 (734)
|.|+...+..|.+++.+. ||+ .|.+.|++|++ .++.|+|+..+--+..
T Consensus 14 ~~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~---~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (405)
T d1lnsa3 14 ATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTS 90 (405)
T ss_dssp SCSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCS
T ss_pred ceecCCCceEeEEEEeCCCCCCCCCCEeEEEEEEEccCC---CCCceEEEEeCCcCCCCccccccccccccccccccccc
Confidence 346666667788888775 898 59999999987 4688999864331100
Q ss_pred ----------------------------cCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHH
Q psy4818 501 ----------------------------SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDF 552 (734)
Q Consensus 501 ----------------------------~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~ 552 (734)
.....+.....++++++||+|+.+|.||.|+.+..|... ...+.+|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~-----~~~e~~D~ 165 (405)
T d1lnsa3 91 HEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSG-----DYQQIYSM 165 (405)
T ss_dssp EECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTT-----SHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCccccC-----ChhhhhhH
Confidence 000111222346777889999999999988887665543 23457899
Q ss_pred HHHHHHHHHcCCCCC--------------CcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccccc-----
Q psy4818 553 QAAAEYMINKKYTKP--------------KYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTI----- 613 (734)
Q Consensus 553 ~~~~~~l~~~~~~d~--------------~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~----- 613 (734)
.++|+||..+...++ .|||++|.||||++..++|++.|..++|+|+.+++.|+.......-
T Consensus 166 ~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~ 245 (405)
T d1lnsa3 166 TAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSP 245 (405)
T ss_dssp HHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCC
T ss_pred HHHHHHHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccc
Confidence 999999976533222 4899999999999999999988888899999999999864321100
Q ss_pred Cccccccc-------CC---------------------------CCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEec
Q psy4818 614 AYYSESEF-------GS---------------------------PNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTG 659 (734)
Q Consensus 614 ~~~~~~~~-------g~---------------------------~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g 659 (734)
...|.... .. ......-+.+.+.+|..++.+ +++| +|+++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~----I~vP-~L~i~G 320 (405)
T d1lnsa3 246 GGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDK----VKAD-VLIVHG 320 (405)
T ss_dssp TTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGG----CCSE-EEEEEE
T ss_pred cchhhhhhhhhhccccccccccchhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhc----CCCC-EEEEEe
Confidence 00000000 00 000000134566788777776 8888 999999
Q ss_pred CCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCCC
Q psy4818 660 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 660 ~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
..|..|++.++.+++++|++ +.+..|++.| .+|....... ..+....+++||+++|+..
T Consensus 321 w~D~~v~~~~~~~~y~al~~--------~~~~~Lilgp-w~H~~~~~~~-~~d~~~~~~~wFD~~LkG~ 379 (405)
T d1lnsa3 321 LQDWNVTPEQAYNFWKALPE--------GHAKHAFLHR-GAHIYMNSWQ-SIDFSETINAYFVAKLLDR 379 (405)
T ss_dssp TTCCSSCTHHHHHHHHHSCT--------TCCEEEEEES-CSSCCCTTBS-SCCHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCHHHHHHHHHHHHh--------CCCcEEEEeC-CCCCCCcccc-cchHHHHHHHHHHHHhCCC
Confidence 99999999999999998863 5577888877 5887543221 1345566789999999653
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.80 E-value=3.7e-19 Score=184.99 Aligned_cols=243 Identities=15% Similarity=0.075 Sum_probs=164.4
Q ss_pred EEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCC--CcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchh
Q psy4818 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYG--VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 459 ~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~--~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~ 536 (734)
.+.+.++.+||++|.+.|++|++ +++.|+||..||... ......+.... +.++++||+|+++|.||.|+.+..|
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~---~~~~P~il~~~pyg~~~~~~~~~~~~~~-~~~a~~GY~vv~~d~RG~g~S~G~~ 80 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNW-LEFVRDGYAVVIQDTRGLFASEGEF 80 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC---SSCEEEEEEEESSCTTCCHHHHTTSCCT-HHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred EeCeEEECCCCCEEEEEEEEcCC---CCCEEEEEEEcCCCCccccCcCcccHHH-HHHHHCCCEEEEEeeCCccccCCcc
Confidence 45699999999999999999986 578999999987322 21112222222 4456689999999999988877554
Q ss_pred hhccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC-c
Q psy4818 537 HNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA-Y 615 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~-~ 615 (734)
. .......|..++++|+.++.+.| .||+++|+|+||+++.++|++.|..++|+|+.++..|+........+ .
T Consensus 81 ~------~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~ 153 (347)
T d1ju3a2 81 V------PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGA 153 (347)
T ss_dssp C------TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCC
T ss_pred c------cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCc
Confidence 3 23344578899999999999987 69999999999999999999989889999999999987532111000 0
Q ss_pred c-------cccc--------cCC--CCC-------------------------------------------HHHHHHHHh
Q psy4818 616 Y-------SESE--------FGS--PNN-------------------------------------------KTHFHNLLS 635 (734)
Q Consensus 616 ~-------~~~~--------~g~--~~~-------------------------------------------~~~~~~~~~ 635 (734)
. |... ... +.. +..-.++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 233 (347)
T d1ju3a2 154 LSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQS 233 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHHT
T ss_pred cchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhhc
Confidence 0 0000 000 000 000013344
Q ss_pred CCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCc---------
Q psy4818 636 YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTP--------- 706 (734)
Q Consensus 636 ~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~--------- 706 (734)
.+|+.++.+ ++.| +|+++|..|..+ ..+.+++.+++. +.+..+++.|. +|+....
T Consensus 234 ~~~~~~~~~----i~vP-~L~i~G~~D~~~--~~~~~~~~~~~~--------~~~~~liigpw-~H~~~~~~~~~~~~g~ 297 (347)
T d1ju3a2 234 ISLFERLGG----LATP-ALITAGWYDGFV--GESLRTFVAVKD--------NADARLVVGPW-SHSNLTGRNADRKFGI 297 (347)
T ss_dssp TCCHHHHTT----CCCC-EEEEEEEECTTH--HHHHHHHHHHTT--------TSCEEEEEEEE-ESSCCSSEETTEECCG
T ss_pred CCHHHHhhc----CCCC-EEEeccccCCCc--chhHHHHHHhhc--------cCCceEEEcCc-cccCcccccCCCCCCc
Confidence 456555554 7788 999999999754 456778877764 45677777664 5543210
Q ss_pred --hHHhHHHHHHHHHHHHHHcCCC
Q psy4818 707 --LMKSIEEMTDIYVFLMKSLGLK 728 (734)
Q Consensus 707 --~~~~~~~~~~~~~fl~~~l~~~ 728 (734)
.....+.....+.||+++|+..
T Consensus 298 ~~~~~~~~~~~~~l~wfD~~LKg~ 321 (347)
T d1ju3a2 298 AATYPIQEATTMHKAFFDRHLRGE 321 (347)
T ss_dssp GGSCCHHHHHHHHHHHHHHHTSCC
T ss_pred cccccHHHHHHHHHHHHHHHhCCC
Confidence 0112455667899999999754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=9.2e-17 Score=159.93 Aligned_cols=262 Identities=14% Similarity=0.112 Sum_probs=178.2
Q ss_pred CeEEEEEEcC-CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCC
Q psy4818 101 NNYFYFHNKG-LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179 (734)
Q Consensus 101 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~ 179 (734)
.++.|+.+.. ++....||+++..+...++|++... .+..++|||||++|||.....+. ..+++++..++.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~-------~~~sP~wSPDGk~IAf~~~~~~~--~~~~~~~~~~~~ 74 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGA 74 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS-------CEEEEEECTTSSEEEEEECTTSS--CEEEEEETTTCC
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCC-------ceeeeEECCCCCEEEEEEeeccC--cceeeeecccCc
Confidence 3577887764 3444579999988888888886542 26789999999999999887655 679999999988
Q ss_pred cccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEec
Q psy4818 180 DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTD 259 (734)
Q Consensus 180 ~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp 259 (734)
....+........+.|||||+.|++..... ....+......... .............+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~spdg~~i~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 136 (269)
T d2hqsa1 75 VRQVASFPRHNGAPAFSPDGSKLAFALSKT-------------GSLNLYVMDLASGQ-----IRQVTDGRSNNTEPTWFP 136 (269)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECTT-------------SSCEEEEEETTTCC-----EEECCCCSSCEEEEEECT
T ss_pred eeEEeeeecccccceecCCCCeeeEeeecC-------------Cccceeeccccccc-----ceeeeecccccccccccc
Confidence 654444433336789999999999987532 11233333333221 111111222345678999
Q ss_pred CCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce-EEEEEecCCeEEEEeCCCCCCceEEEEecCCC
Q psy4818 260 CGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH-HEIIANNGPELIVKTTKNAPKGKVVTINLNNP 338 (734)
Q Consensus 260 DG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 338 (734)
+++.+++..... ....|++.+++++. ...+....... ...|+|||+.+++.++..+ ...++.++..++
T Consensus 137 ~~~~~~~~~~~~-g~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~-~~~i~~~~~~~~ 205 (269)
T d2hqsa1 137 DSQNLAFTSDQA-GRPQVYKVNINGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG 205 (269)
T ss_dssp TSSEEEEEECTT-SSCEEEEEETTSSC---------CEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETTTC
T ss_pred ccccceeccccc-CCceEeeeeccccc---------ceeeecccccccccccccccceeEEEeecCC-ceeeeEeecccc
Confidence 999999887654 34689999998832 22222222222 2349999999999887654 566999998766
Q ss_pred CCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCc
Q psy4818 339 CEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 406 (734)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~ 406 (734)
. ..++... .........++++.|+|....++...|+++++. |...++|+...+.+..++++|
T Consensus 206 ~----~~~~~~~-~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d-g~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 206 G----VQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp C----EEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred c----ceEeecC-ccccceEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEeCCCCcEEeEEeCC
Confidence 5 4455443 233333445677889999888888899999994 555577877777776777776
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.79 E-value=3.2e-18 Score=179.84 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=118.3
Q ss_pred CCCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCC----CCcCCcccc-----HHHHHHHHhcCeEEEEE
Q psy4818 454 PTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY----GVSVLPTFS-----ISRCMFLRHFNGIYAIP 524 (734)
Q Consensus 454 ~~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~----~~~~~~~~~-----~~~~~~l~~~G~~v~~~ 524 (734)
...+..+.+.++.+||++|.+.||+|++ .++.|+||..|.-. .......+. .....+|+++||+|+.+
T Consensus 23 ~~~~~~~~v~ipmrDG~~L~~~v~~P~~---~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~ 99 (385)
T d2b9va2 23 QRDYIKREVMVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 99 (385)
T ss_dssp CCSEEEEEEEEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred CCCCeEeEEEEECCCCCEEEEEEEEcCC---CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEE
Confidence 4456788899999999999999999986 57899999865311 111111111 11345677789999999
Q ss_pred ecccCCCCCchhhhccc-----cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 525 NIRGGGELGEDWHNAGR-----LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 525 ~~rG~~~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
|+||.|+.+..|..... ......+.+|..++++||.++...+.+||+++|+||||+++++++++.|..++|+|..
T Consensus 100 d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~ 179 (385)
T d2b9va2 100 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPE 179 (385)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEe
Confidence 99998888877765422 2344567899999999999998778899999999999999999999989999999999
Q ss_pred CCcchhcc
Q psy4818 600 VGALDMLR 607 (734)
Q Consensus 600 ~~~~d~~~ 607 (734)
+++.|+..
T Consensus 180 ~~~~d~~~ 187 (385)
T d2b9va2 180 SPMVDGWM 187 (385)
T ss_dssp EECCCTTT
T ss_pred cccccccc
Confidence 99887654
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.78 E-value=3e-18 Score=163.13 Aligned_cols=194 Identities=10% Similarity=0.058 Sum_probs=135.8
Q ss_pred EEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc-ccc----CCCch
Q psy4818 475 YIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR-LLK----KQNCF 549 (734)
Q Consensus 475 ~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~-~~~----~~~~~ 549 (734)
.++.|.. +++.|+||++||+.+... .|. .+...+++ ++.|++|+....+..+..|..... ... .....
T Consensus 4 ~i~~~~~---~~~~P~vi~lHG~g~~~~--~~~-~~~~~l~~-~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (202)
T d2h1ia1 4 HVFQKGK---DTSKPVLLLLHGTGGNEL--DLL-PLAEIVDS-EASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRT 76 (202)
T ss_dssp EEEECCS---CTTSCEEEEECCTTCCTT--TTH-HHHHHHHT-TSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHH
T ss_pred ccCCCCC---CCCCCEEEEECCCCCCHH--HHH-HHHHHhcc-CCceeeecccccCCCCccccccCCCCCCchHHHHHHH
Confidence 3555543 467899999999643322 232 34566775 889988865433322222222110 000 11234
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHH
Q psy4818 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTH 629 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~ 629 (734)
+++...++++.++..+|++||+++|+|+||++++.++.++|+.++++++..|.....
T Consensus 77 ~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~----------------------- 133 (202)
T d2h1ia1 77 KELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR----------------------- 133 (202)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS-----------------------
T ss_pred HHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc-----------------------
Confidence 557777777777888999999999999999999999999999999999888764210
Q ss_pred HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHH
Q psy4818 630 FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMK 709 (734)
Q Consensus 630 ~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 709 (734)
+...... ... +++++||++|++||+.++.+++++|++. |.+++++.||+ ||.+.
T Consensus 134 --------~~~~~~~----~~~-~~~i~~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~~~g-gH~~~----- 187 (202)
T d2h1ia1 134 --------GMQLANL----AGK-SVFIAAGTNDPICSSAESEELKVLLENA-------NANVTMHWENR-GHQLT----- 187 (202)
T ss_dssp --------SCCCCCC----TTC-EEEEEEESSCSSSCHHHHHHHHHHHHTT-------TCEEEEEEESS-TTSCC-----
T ss_pred --------ccccccc----ccc-hhhcccccCCCccCHHHHHHHHHHHHHC-------CCCEEEEEECC-CCcCC-----
Confidence 0000011 223 3999999999999999999999999998 99999999986 89874
Q ss_pred hHHHHHHHHHHHHHHc
Q psy4818 710 SIEEMTDIYVFLMKSL 725 (734)
Q Consensus 710 ~~~~~~~~~~fl~~~l 725 (734)
.+....+.+||.+.+
T Consensus 188 -~~~~~~~~~wl~k~f 202 (202)
T d2h1ia1 188 -MGEVEKAKEWYDKAF 202 (202)
T ss_dssp -HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhC
Confidence 234556899998864
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.77 E-value=2.6e-17 Score=158.08 Aligned_cols=213 Identities=17% Similarity=0.149 Sum_probs=155.1
Q ss_pred EEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCC--CCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 461 QVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGY--GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 461 ~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~--~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
++++...+| +|++++..++ .+..|++|+.||.+ +.++........+..|.++||.++.+|+||-|...
T Consensus 2 ev~i~g~~G-~Le~~~~~~~----~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~----- 71 (218)
T d2i3da1 2 EVIFNGPAG-RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQ----- 71 (218)
T ss_dssp EEEEEETTE-EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCC-----
T ss_pred cEEEeCCCc-cEEEEEeCCC----CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCc-----
Confidence 477888888 7999865433 35578999999853 44444433344566678889999999999965443
Q ss_pred ccccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccc
Q psy4818 539 AGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618 (734)
Q Consensus 539 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 618 (734)
+....+....+|..++++|+..+...+ .++.+.|+|+||.+++.++.+.+.. .++++.+|.......
T Consensus 72 -G~~~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~~~~-~~~~~~~~~~~~~~~---------- 138 (218)
T d2i3da1 72 -GEFDHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRRPEI-EGFMSIAPQPNTYDF---------- 138 (218)
T ss_dssp -SCCCSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHCTTE-EEEEEESCCTTTSCC----------
T ss_pred -cccccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhhccc-cceeeccccccccch----------
Confidence 333444556789999999998876544 4689999999999999999887654 566666654422110
Q ss_pred cccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCC
Q psy4818 619 SEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698 (734)
Q Consensus 619 ~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 698 (734)
..+.. ...| +|+++|..|..++..+..+++++++.. + +..+++.+++|
T Consensus 139 ---------------------~~~~~----~~~p-~l~i~g~~D~~~~~~~~~~l~~~~~~~----~--~~~~~~~vi~g 186 (218)
T d2i3da1 139 ---------------------SFLAP----CPSS-GLIINGDADKVAPEKDVNGLVEKLKTQ----K--GILITHRTLPG 186 (218)
T ss_dssp ---------------------TTCTT----CCSC-EEEEEETTCSSSCHHHHHHHHHHHTTS----T--TCCEEEEEETT
T ss_pred ---------------------hhccc----cCCC-ceeeecccceecChHHHHHHHHHHhhc----c--CCCccEEEeCC
Confidence 11111 3344 999999999999999999999998764 1 55688999999
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHcCCCCCC
Q psy4818 699 AGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731 (734)
Q Consensus 699 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 731 (734)
++|.|.... .+..+.+.+||.++|.....|
T Consensus 187 AdHfF~g~~---~~l~~~v~~~l~~~l~~~~~p 216 (218)
T d2i3da1 187 ANHFFNGKV---DELMGECEDYLDRRLNGELVP 216 (218)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHHHTTCSSC
T ss_pred CCCCCcCCH---HHHHHHHHHHHHHhcCCCCCC
Confidence 999997543 345566899999999877665
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.9e-16 Score=170.02 Aligned_cols=312 Identities=10% Similarity=0.041 Sum_probs=190.4
Q ss_pred cEEeCCeEEEEEEcCCC----CeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEE
Q psy4818 96 PQRQENNYFYFHNKGLQ----NHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 171 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~ 171 (734)
.++||.+++|..+.... ....+|+.+...+..+.|.....- ...+..+.|||||++|||+.+ .+||
T Consensus 68 ~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~----~~~l~~~~wSPDG~~iafv~~------~nl~ 137 (465)
T d1xfda1 68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS----NAKLQYAGWGPKGQQLIFIFE------NNIY 137 (465)
T ss_dssp ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC----SCCCSBCCBCSSTTCEEEEET------TEEE
T ss_pred ECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC----ccccceeeeccCCceEEEEec------ceEE
Confidence 45899998887653211 124566667666666665443211 123567999999999999874 3699
Q ss_pred EEECCCCCccccccccc-------------------ccCeeEEEcCCcEEEEEEEecCCCCC------CCC--cc-----
Q psy4818 172 IKDVDTGKDYPEVLKNV-------------------KFPSISWTHDHKGFFYNQYCDINGTA------DGT--ET----- 219 (734)
Q Consensus 172 v~dl~~g~~~~~~~~~~-------------------~~~~~~wSpDg~~l~y~~~~~~~~~~------~~~--~~----- 219 (734)
+++..++...+.+..+. ...++.|||||++|+|.+.++..... .+. ..
T Consensus 138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~ 217 (465)
T d1xfda1 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (465)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence 99998877544332211 01367799999999999987653210 000 00
Q ss_pred -----cccCCcEEEEEECCCCCCCCeeEEe--cCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC
Q psy4818 220 -----TAHMGQKIYYHVLGTEQDKDIPVVE--FPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG 292 (734)
Q Consensus 220 -----~~~~~~~l~~~~l~t~~~~~~~v~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 292 (734)
+.+...+|+++++.++......+-. ......+...+.|+||++.++...++......|+++|..+|..
T Consensus 218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~----- 292 (465)
T d1xfda1 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC----- 292 (465)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE-----
T ss_pred ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE-----
Confidence 1111236888888765432111000 0112335677899999998888777766667899999988532
Q ss_pred CCCceeeecccc-------ceEEEEEecCCeEEEE--eCCCCCCceEEEEecCCC----CCCCceEeecCCCCceeEEEE
Q psy4818 293 KFPLKTVIPGMD-------HHHEIIANNGPELIVK--TTKNAPKGKVVTINLNNP----CEKNWKTLIPEDENRTLDVVA 359 (734)
Q Consensus 293 ~~~~~~l~~~~~-------~~~~~~s~dg~~l~~~--s~~~~~~~~l~~~d~~~~----~~~~~~~l~~~~~~~~~~~~~ 359 (734)
..+..... .....|++||+.++|+ +.+++ ...+|.+.+.+. .....+.|+.+. ..+.....
T Consensus 293 ----~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g-~~~ly~~~~~~~~~~~~~~~~~~LT~G~-w~V~~i~~ 366 (465)
T d1xfda1 293 ----TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG-RGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILA 366 (465)
T ss_dssp ----EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS-SSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEE
T ss_pred ----EEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecc-cCceEEEEeccccccCCCceeEEeccCC-ceEEEEEE
Confidence 22222111 1223599999988776 34433 334777654321 111235555543 66554444
Q ss_pred Ee-eCCEEEEEEEeCC--ceeEEEEECCCCceeeeeCC---CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 360 AV-ANNKLIVHYIQNV--RSVMDLHDLNTGKRLHSFPL---DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 360 ~~-~~~~l~~~~~~~~--~~~l~~~dl~~g~~~~~l~~---~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+. +++.|||.+..+. ..+||.+++..+...+.++. ..+...++++|++++.++..|+++..|. +.+++.
T Consensus 367 ~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~ 441 (465)
T d1xfda1 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM-VTVHNT 441 (465)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC-EEEEET
T ss_pred EcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCe-EEEEEC
Confidence 43 3468888887654 35799999954444444542 2344557888999999999999998887 566666
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3.6e-18 Score=170.11 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=145.2
Q ss_pred ceEEEEEEEcCCCc-EEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCch
Q psy4818 457 FQTKQVYFRSKDGT-RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535 (734)
Q Consensus 457 ~~~~~~~~~s~dg~-~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~ 535 (734)
+..+.+.+.+.||. ++.++|++|+++++++++|+|+++||+........ ....++.+.+|++|+++++|+...++..
T Consensus 11 ~~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~~--~~~~~~~~~~~~~vV~v~~~~~~~~~~~ 88 (265)
T d2gzsa1 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDD--ELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (265)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCCH--HHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceeEEEEEEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHHH--HHHHHHHhcCCCeEEEecCCCCCcCccc
Confidence 46889999999984 79999999999988899999999999743322111 1123455677999999999998877654
Q ss_pred hhhccc--------cc-------cC---CCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeE
Q psy4818 536 WHNAGR--------LL-------KK---QNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 595 (734)
Q Consensus 536 ~~~~~~--------~~-------~~---~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a 595 (734)
...... .. .. ...+.++. .++.++.++..+|+++++|+|+|+||++++.++.+ ++.|.+
T Consensus 89 ~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~ 167 (265)
T d2gzsa1 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (265)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCE
Confidence 321100 00 00 11122322 24555555666899999999999999999998876 567788
Q ss_pred EEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCC--------CCCCCC
Q psy4818 596 ALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH--------DDRVPP 667 (734)
Q Consensus 596 ~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~--------D~~v~~ 667 (734)
+++.+|...+. .... +...+++..... ...| +++.+|.. |.++++
T Consensus 168 ~~a~s~~~~~~-------------------~~~~---~~~~~~~~~~~~----~~~~-~~~~~g~~~~~~~~~~d~~~~~ 220 (265)
T d2gzsa1 168 YYSASPSLGRG-------------------YDAL---LSRVTAVEPLQF----CTKH-LAIMEGSATQGDNRETHAVGVL 220 (265)
T ss_dssp EEEESGGGSTT-------------------HHHH---HHHHHTSCTTTT----TTCE-EEEEECCC-----------CHH
T ss_pred EEEECCccccc-------------------chhh---hhcccccccccc----CCCc-EEEEcCCcccccccccccchhH
Confidence 88888765321 1112 222334333332 3333 88888866 778899
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~ 703 (734)
.++.+++++|+++ |+++++.+|||++|+.
T Consensus 221 ~~~~~l~~~L~~~-------g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 221 SKIHTTLTILKDK-------GVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHHHHHHT-------TCCEEEEECTTCCHHH
T ss_pred HHHHHHHHHHHHC-------CCCEEEEEcCCCCcch
Confidence 9999999999999 9999999999999963
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.73 E-value=9.2e-16 Score=166.04 Aligned_cols=288 Identities=11% Similarity=0.047 Sum_probs=176.4
Q ss_pred EEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC----CCceEEEEEEECCCCCcccccccccccCe
Q psy4818 117 LYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS----GSDWNTLHIKDVDTGKDYPEVLKNVKFPS 192 (734)
Q Consensus 117 l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~----g~~~~~l~v~dl~~g~~~~~~~~~~~~~~ 192 (734)
+++.+..++...++++...+... ...+.+++|||||++|||..+.. .+...++|++|+++|+..+.+........
T Consensus 38 ~~~~~~~t~~~~~~~~~~~~~~~-~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~ 116 (470)
T d2bgra1 38 ILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQW 116 (470)
T ss_dssp EEEEETTTCCEEEEECTTTTTTS-SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEE
T ss_pred EEEEECCCCCEEEEEchhhhhhc-cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccc
Confidence 67778778888899998776533 23477899999999999987532 12346899999999987655544444468
Q ss_pred eEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCee-------EEecCCC-------CeeEEEEEEe
Q psy4818 193 ISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIP-------VVEFPNG-------RSLGLHSEVT 258 (734)
Q Consensus 193 ~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~-------v~~~~~~-------~~~~~~~~~S 258 (734)
+.|||||+.|+|++.. .+|++++.++....+. ++....+ ......+.||
T Consensus 117 ~~~SPDG~~ia~~~~~-----------------~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS 179 (470)
T d2bgra1 117 VTWSPVGHKLAYVWNN-----------------DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS 179 (470)
T ss_dssp EEECSSTTCEEEEETT-----------------EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred cccccCcceeeEeecc-----------------cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC
Confidence 9999999999997631 5777777665432111 1110000 0112346799
Q ss_pred cCCcEEEEEEecCCC--------------------------------CceEEEEeCCCCCCCcccCC-------------
Q psy4818 259 DCGRYLLVSTSNNTQ--------------------------------GSDLHYFDLHSLPDGKISGK------------- 293 (734)
Q Consensus 259 pDG~~l~~~~~~~~~--------------------------------~~~i~~~d~~~~~~~~l~~~------------- 293 (734)
|||++|++....... ...++++++.++....+...
T Consensus 180 PDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (470)
T d2bgra1 180 PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD 259 (470)
T ss_dssp TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSC
T ss_pred CCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCC
Confidence 999999986532110 02456666655322111000
Q ss_pred ----------------------CCc--eeeec--c------------------------ccceEEEEEecCCe-EEEEeC
Q psy4818 294 ----------------------FPL--KTVIP--G------------------------MDHHHEIIANNGPE-LIVKTT 322 (734)
Q Consensus 294 ----------------------~~~--~~l~~--~------------------------~~~~~~~~s~dg~~-l~~~s~ 322 (734)
... ..+.. . .......++++++. +++.+.
T Consensus 260 ~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~ 339 (470)
T d2bgra1 260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN 339 (470)
T ss_dssp EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred ceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEec
Confidence 000 00000 0 00011124555554 455566
Q ss_pred CCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC----ceeEEEEECCCCceeeeeCC----
Q psy4818 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV----RSVMDLHDLNTGKRLHSFPL---- 394 (734)
Q Consensus 323 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~l~~~dl~~g~~~~~l~~---- 394 (734)
+++ ...||+++.+++. ...++.+. ..+. .+...+++.+||.+...+ ..+||.+++..+...+.|+.
T Consensus 340 ~dg-~~~ly~~~~~g~~---~~~lt~g~-~~v~-~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (470)
T d2bgra1 340 EEG-YRHICYFQIDKKD---CTFITKGT-WEVI-GIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNP 413 (470)
T ss_dssp TTS-CEEEEEEETTCSC---CEESCCSS-SCEE-EEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTST
T ss_pred cCc-CceeEEEeccCCc---eeeeccCC-eeEE-EEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccC
Confidence 655 4469999988765 35555443 4444 444455588888776433 23799999965555566653
Q ss_pred CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 395 DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 395 ~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+.+.++++|||++.++..|+++.+|.. .+++.
T Consensus 414 ~~~~~~s~~fSpdgky~~~~~s~~~~P~~-~l~~~ 447 (470)
T d2bgra1 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLY-TLHSS 447 (470)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEE-EEEET
T ss_pred CCCCEEEEEECCCCCEEEEEecCCCCCeE-EEEEC
Confidence 24456688899999999999999999974 56666
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=5e-18 Score=168.79 Aligned_cols=194 Identities=12% Similarity=0.060 Sum_probs=125.5
Q ss_pred CCCCcEEEEecCCCCCcC---Ccccc---HHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSV---LPTFS---ISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~---~~~~~---~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 558 (734)
.++.|+|||+|||..... ...|. ..+..++.++||.|+.+|||++++.. ....++|+.++++|
T Consensus 28 ~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~-----------~~~~~~d~~~~~~~ 96 (263)
T d1vkha_ 28 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITR 96 (263)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchh-----------hhHHHHhhhhhhhc
Confidence 357799999999843221 12222 22345556779999999999977643 12347899999999
Q ss_pred HHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC-----------------ceeEEEEcCCcchhccccccccCcccc--c
Q psy4818 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPE-----------------LYGAALILVGALDMLRFNKFTIAYYSE--S 619 (734)
Q Consensus 559 l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-----------------~~~a~v~~~~~~d~~~~~~~~~~~~~~--~ 619 (734)
+.++ .++.+|+|+|+|+||.+++.++...++ ..++.+...++.++...........+. .
T Consensus 97 l~~~--~~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (263)
T d1vkha_ 97 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRL 174 (263)
T ss_dssp HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHHH
T ss_pred cccc--ccccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhhc
Confidence 9887 467899999999999999998875443 346666666666554332110000000 0
Q ss_pred ccCC-CCC-HHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeC
Q psy4818 620 EFGS-PNN-KTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697 (734)
Q Consensus 620 ~~g~-~~~-~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 697 (734)
.++. +.. ......... .....+.. ...| +||+||++|++||+.++.+|+++|++. |+++++++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~P-~lii~G~~D~~vp~~~s~~l~~~L~~~-------g~~~~~~~~~ 241 (263)
T d1vkha_ 175 AFPDGIQMYEEEPSRVMP-YVKKALSR----FSID-MHLVHSYSDELLTLRQTNCLISCLQDY-------QLSFKLYLDD 241 (263)
T ss_dssp HCTTCGGGCCCCHHHHHH-HHHHHHHH----HTCE-EEEEEETTCSSCCTHHHHHHHHHHHHT-------TCCEEEEEEC
T ss_pred ccccccccccccccccCc-cccccccc----cCCC-eeeeecCCCcccCHHHHHHHHHHHHHC-------CCCEEEEEEC
Confidence 0111 100 000000000 00111111 3334 999999999999999999999999999 9999999999
Q ss_pred CCCCCCC
Q psy4818 698 DAGHGQG 704 (734)
Q Consensus 698 ~~gH~~~ 704 (734)
+++|...
T Consensus 242 ~~~H~~~ 248 (263)
T d1vkha_ 242 LGLHNDV 248 (263)
T ss_dssp CCSGGGG
T ss_pred CCCchhh
Confidence 9999653
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.72 E-value=3.3e-17 Score=161.95 Aligned_cols=203 Identities=14% Similarity=0.051 Sum_probs=131.8
Q ss_pred ceEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcc----ccHHHHHHHHhcC----eEEEEEecc
Q psy4818 457 FQTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPT----FSISRCMFLRHFN----GIYAIPNIR 527 (734)
Q Consensus 457 ~~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~----~~~~~~~~l~~~G----~~v~~~~~r 527 (734)
-..+.+.+.|. +|++++++|++|+++++++++|+|+++||+.+...... ........+...+ +.+...+..
T Consensus 20 g~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (255)
T d1jjfa_ 20 GQVVNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTN 99 (255)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCC
T ss_pred eEEEEEEEEecCCCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeecccc
Confidence 36778878775 78999999999999988899999999999865543321 1111222222223 233333322
Q ss_pred cCCCCCchhhhccccccCCCchh-HHHHHHHHHHHc--CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcch
Q psy4818 528 GGGELGEDWHNAGRLLKKQNCFD-DFQAAAEYMINK--KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604 (734)
Q Consensus 528 G~~~~g~~~~~~~~~~~~~~~~~-D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d 604 (734)
........ ......+ .+...+.++.++ ..+|++|+++.|+|+||++++.++.++|++|+++++.+|..+
T Consensus 100 ~~~~~~~~--------~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~ 171 (255)
T d1jjfa_ 100 AAGPGIAD--------GYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 171 (255)
T ss_dssp CCCTTCSC--------HHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTT
T ss_pred cccccccc--------cccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcC
Confidence 21111100 0001111 222334444443 448999999999999999999999999999999999988665
Q ss_pred hccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCC
Q psy4818 605 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSL 684 (734)
Q Consensus 605 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~ 684 (734)
...... ..+.... ... ...|+++|.||+.|..++ ...+++++|+++
T Consensus 172 ~~~~~~-----------~~~~~~~------------~~~-----~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~---- 217 (255)
T d1jjfa_ 172 TYPNER-----------LFPDGGK------------AAR-----EKLKLLFIACGTNDSLIG--FGQRVHEYCVAN---- 217 (255)
T ss_dssp SCCHHH-----------HCTTTTH------------HHH-----HHCSEEEEEEETTCTTHH--HHHHHHHHHHHT----
T ss_pred Cccccc-----------ccccHHH------------Hhh-----ccCCcceEEeCCCCCCch--HHHHHHHHHHHC----
Confidence 321110 0000000 001 223359999999998876 467899999999
Q ss_pred CCCCCcEEEEEeCCCCCCCC
Q psy4818 685 PYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 685 ~~~~~~~~~~~~~~~gH~~~ 704 (734)
|.++++.+++++||.+.
T Consensus 218 ---g~~~~~~~~~~ggH~~~ 234 (255)
T d1jjfa_ 218 ---NINHVYWLIQGGGHDFN 234 (255)
T ss_dssp ---TCCCEEEEETTCCSSHH
T ss_pred ---CCCEEEEEECCCCcCHH
Confidence 99999999999999763
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7e-17 Score=156.50 Aligned_cols=195 Identities=17% Similarity=0.138 Sum_probs=127.0
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEeccc------CCCCCchhhhcccccc-CCCchhHHHH---H
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRG------GGELGEDWHNAGRLLK-KQNCFDDFQA---A 555 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG------~~~~g~~~~~~~~~~~-~~~~~~D~~~---~ 555 (734)
+..++||++||..+... .|.. ....+...|+.+++++-+. .+..+..|+....... ...+.+++.. .
T Consensus 19 ~~~~~VI~lHG~G~~~~--~~~~-~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~ 95 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDTGH--GWAE-AFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAEN 95 (229)
T ss_dssp CCSEEEEEECCSSSCHH--HHHH-HHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHH--HHHH-HHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHH
Confidence 45678999999533321 2222 2233445689999876321 2233445654322111 1222222332 2
Q ss_pred HHHHHH---cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHH
Q psy4818 556 AEYMIN---KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHN 632 (734)
Q Consensus 556 ~~~l~~---~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 632 (734)
++.+++ +..++++||+|+|+|+||.+++.++.++|+.|+++|+.+|.+-......
T Consensus 96 l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~---------------------- 153 (229)
T d1fj2a_ 96 IKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP---------------------- 153 (229)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC----------------------
T ss_pred HHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccccc----------------------
Confidence 222222 2348999999999999999999999999999999999887542111000
Q ss_pred HHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHH
Q psy4818 633 LLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIE 712 (734)
Q Consensus 633 ~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 712 (734)
.++..... .+.| +|++||++|++||+.++++.++.|++.. .+..+++++|++.||.+. .+
T Consensus 154 ---~~~~~~~~-----~~~P-vli~hG~~D~~vp~~~~~~~~~~L~~~~-----~~~~v~~~~~~g~gH~i~------~~ 213 (229)
T d1fj2a_ 154 ---QGPIGGAN-----RDIS-ILQCHGDCDPLVPLMFGSLTVEKLKTLV-----NPANVTFKTYEGMMHSSC------QQ 213 (229)
T ss_dssp ---SSCCCSTT-----TTCC-EEEEEETTCSSSCHHHHHHHHHHHHHHS-----CGGGEEEEEETTCCSSCC------HH
T ss_pred ---cccccccc-----ccCc-eeEEEcCCCCeeCHHHHHHHHHHHHhcC-----CCCceEEEEeCCCCCccC------HH
Confidence 01111111 2345 9999999999999999999999999851 167899999999999874 24
Q ss_pred HHHHHHHHHHHHc
Q psy4818 713 EMTDIYVFLMKSL 725 (734)
Q Consensus 713 ~~~~~~~fl~~~l 725 (734)
+..++.+||.++|
T Consensus 214 ~~~~~~~wL~~~L 226 (229)
T d1fj2a_ 214 EMMDVKQFIDKLL 226 (229)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhHC
Confidence 4567899999998
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.71 E-value=6.6e-18 Score=166.07 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=139.4
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchh
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDW 536 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~ 536 (734)
.++++++.|. .|.+++++++.|++++ ++++|+||++||+....... ... .+..+.++|....++.+...++.+..
T Consensus 14 ~~~~~~~~S~~lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~~-~~~-~l~~l~~~~~~~~~i~v~~~~~~~~~- 89 (246)
T d3c8da2 14 PAKEIIWKSERLKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSMP-VWP-VLTSLTHRQQLPPAVYVLIDAIDTTH- 89 (246)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCCCEEEESSHHHHHHTSC-CHH-HHHHHHHTTSSCSCEEEEECCCSHHH-
T ss_pred CcEEEEEECCCCCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccCc-HHH-HHHHHHHhCCCCceEEeecccccccc-
Confidence 5677888875 5889999999999875 46799999999975433322 222 23334445643222222211111111
Q ss_pred hhccccccCCCchhHHH-H-HHHHHHHc--CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc
Q psy4818 537 HNAGRLLKKQNCFDDFQ-A-AAEYMINK--KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612 (734)
Q Consensus 537 ~~~~~~~~~~~~~~D~~-~-~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 612 (734)
... .......+.+++ . .+.++.++ ..+|+++++|+|+|+||++++.++.++|++|+++++.+|..++....
T Consensus 90 ~~~--~~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~--- 164 (246)
T d3c8da2 90 RAH--ELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG--- 164 (246)
T ss_dssp HHH--HSSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT---
T ss_pred ccc--ccCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCC---
Confidence 111 111111233332 2 22233332 34789999999999999999999999999999999999987654221
Q ss_pred cCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEE
Q psy4818 613 IAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLL 692 (734)
Q Consensus 613 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~ 692 (734)
...... ....++..+... ...| +++.+|..|+++ +.++++|+++|+++ |.++.
T Consensus 165 ----------~~~~~~----~~~~~~~~~~~~----~~~~-~~l~~G~~D~~~-~~~~~~l~~~L~~~-------g~~~~ 217 (246)
T d3c8da2 165 ----------GQQEGV----LLEKLKAGEVSA----EGLR-IVLEAGIREPMI-MRANQALYAQLHPI-------KESIF 217 (246)
T ss_dssp ----------SSSCCH----HHHHHHTTSSCC----CSCE-EEEEEESSCHHH-HHHHHHHHHHTGGG-------TTSEE
T ss_pred ----------ccchHH----HHHHhhhhhhhc----cCCC-eEEEecCCCcch-hHHHHHHHHHHHHC-------CCCEE
Confidence 111111 112223344433 3334 999999999877 47899999999999 99999
Q ss_pred EEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHc
Q psy4818 693 LRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSL 725 (734)
Q Consensus 693 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 725 (734)
+.++++ ||.+. -......+.+.||.+.|
T Consensus 218 ~~~~~G-gH~~~----~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 218 WRQVDG-GHDAL----CWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp EEEESC-CSCHH----HHHHHHHHHHHHHHGGG
T ss_pred EEEeCC-CCChH----HHHHHHHHHHHHHHHhh
Confidence 999997 89653 22345556677776544
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.70 E-value=1.1e-16 Score=152.80 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=126.2
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccccc-----CCCchhHHHHHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK-----KQNCFDDFQAAAEYM 559 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~-----~~~~~~D~~~~~~~l 559 (734)
.++.|+||++||..+... .|. .+...|.. ++.++.++.+.....+..|........ .....+++.+.++.+
T Consensus 20 ~~~~p~vv~lHG~g~~~~--~~~-~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 95 (209)
T d3b5ea1 20 KESRECLFLLHGSGVDET--TLV-PLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEA 95 (209)
T ss_dssp SSCCCEEEEECCTTBCTT--TTH-HHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHH--HHH-HHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHH
Confidence 356899999999755432 233 34556664 888888876543333333332111000 011235566667777
Q ss_pred HHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCcc
Q psy4818 560 INKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPL 639 (734)
Q Consensus 560 ~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~ 639 (734)
.++..+|++||+|+|+|+||++++.++.++|++|+++|+.+|..... ..+.
T Consensus 96 ~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~-----------------------------~~~~ 146 (209)
T d3b5ea1 96 AKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD-----------------------------HVPA 146 (209)
T ss_dssp HHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS-----------------------------SCCC
T ss_pred HHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc-----------------------------cccc
Confidence 77767899999999999999999999999999999999988854210 0011
Q ss_pred CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHH
Q psy4818 640 HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYV 719 (734)
Q Consensus 640 ~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~ 719 (734)
.+. .+.| +|++||+.|++++ ..+.++++.|++. |.++++.+|++ ||++.. +..+.+.+
T Consensus 147 ~~~------~~~p-~~~~~G~~D~~~~-~~~~~~~~~l~~~-------G~~v~~~~~~g-gH~i~~------~~~~~~~~ 204 (209)
T d3b5ea1 147 TDL------AGIR-TLIIAGAADETYG-PFVPALVTLLSRH-------GAEVDARIIPS-GHDIGD------PDAAIVRQ 204 (209)
T ss_dssp CCC------TTCE-EEEEEETTCTTTG-GGHHHHHHHHHHT-------TCEEEEEEESC-CSCCCH------HHHHHHHH
T ss_pred ccc------ccch-heeeeccCCCccC-HHHHHHHHHHHHC-------CCCeEEEEECC-CCCCCH------HHHHHHHH
Confidence 111 3344 9999999999987 6788999999998 99999999987 799852 22344567
Q ss_pred HHH
Q psy4818 720 FLM 722 (734)
Q Consensus 720 fl~ 722 (734)
||.
T Consensus 205 wl~ 207 (209)
T d3b5ea1 205 WLA 207 (209)
T ss_dssp HHH
T ss_pred HhC
Confidence 774
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.68 E-value=1.1e-16 Score=167.47 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=96.1
Q ss_pred CCceEEEEEEEcCCCcEEeEEEEE--eccccCCCCCcEEEEecCCCCCcCCcccc---HHHHHHHHhcCeEEEEEecccC
Q psy4818 455 TLFQTKQVYFRSKDGTRVPMYIIH--RVGALRNRRNPVIIYGYGGYGVSVLPTFS---ISRCMFLRHFNGIYAIPNIRGG 529 (734)
Q Consensus 455 ~~~~~~~~~~~s~dg~~i~~~~~~--p~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG~ 529 (734)
..|..|+..+++.||..|..+-+. +......++.|+||++||.++++..+... ...+..|+++||.|+++|.||.
T Consensus 23 ~~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~ 102 (377)
T d1k8qa_ 23 WGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred cCCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCC
Confidence 467788889999999888776443 22333457789999999987766543221 2245677778999999999996
Q ss_pred CCCCchhh-hccccccC-----CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEE
Q psy4818 530 GELGEDWH-NAGRLLKK-----QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAAL 597 (734)
Q Consensus 530 ~~~g~~~~-~~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v 597 (734)
|.....-. ........ .....|+.++++++.+. ...+++.++|||+||.+++.++.++|+..+.++
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~--~g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~ 174 (377)
T d1k8qa_ 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIK 174 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEE
T ss_pred CCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHH--cCCCCEEEEEecchHHHHHHHHHhhhhhhhhce
Confidence 64331100 00000111 12356888899998765 234689999999999999999999998654433
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.67 E-value=1.8e-16 Score=150.65 Aligned_cols=184 Identities=17% Similarity=0.137 Sum_probs=124.1
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH---
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN--- 561 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~--- 561 (734)
.+..|+||++||+.+... .|. .+.+.+.. ++.|+.++.+..+ .|..+... ....+....+|+...++.+..
T Consensus 14 ~~~~P~vi~lHG~G~~~~--~~~-~~~~~l~~-~~~v~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 14 VAGAPLFVLLHGTGGDEN--QFF-DFGARLLP-QATILSPVGDVSE-HGAARFFR-RTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CTTSCEEEEECCTTCCHH--HHH-HHHHHHST-TSEEEEECCSEEE-TTEEESSC-BCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHH--HHH-HHHHHhcc-CCeEEEecccccc-cccccccc-ccCccccchhHHHHHHHHHHHHHH
Confidence 466899999999644322 232 23455554 7888888655322 11111111 112233344455444444322
Q ss_pred c--CCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCcc
Q psy4818 562 K--KYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPL 639 (734)
Q Consensus 562 ~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~ 639 (734)
. ..+++++++++|+|+||.++..++.++|+.+.++++..|.......
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~------------------------------- 136 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK------------------------------- 136 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC-------------------------------
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc-------------------------------
Confidence 1 2368899999999999999999999999999999998886521100
Q ss_pred CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHH
Q psy4818 640 HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYV 719 (734)
Q Consensus 640 ~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~ 719 (734)
... . ...++++++||++|++||++++.+++++|++. |.++++++|++ ||++.. +....+.+
T Consensus 137 ~~~-~----~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~-------g~~v~~~~~~g-gH~~~~------~~~~~~~~ 197 (203)
T d2r8ba1 137 ISP-A----KPTRRVLITAGERDPICPVQLTKALEESLKAQ-------GGTVETVWHPG-GHEIRS------GEIDAVRG 197 (203)
T ss_dssp CCC-C----CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHH-------SSEEEEEEESS-CSSCCH------HHHHHHHH
T ss_pred ccc-c----cccchhhccccCCCCcccHHHHHHHHHHHHHC-------CCCEEEEEECC-CCcCCH------HHHHHHHH
Confidence 000 0 11234999999999999999999999999999 99999999986 799752 33556789
Q ss_pred HHHHH
Q psy4818 720 FLMKS 724 (734)
Q Consensus 720 fl~~~ 724 (734)
||.++
T Consensus 198 wl~~~ 202 (203)
T d2r8ba1 198 FLAAY 202 (203)
T ss_dssp HHGGG
T ss_pred HHHhc
Confidence 98764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=2.2e-14 Score=142.30 Aligned_cols=240 Identities=15% Similarity=0.134 Sum_probs=158.2
Q ss_pred cEEEEEEeCCC-CceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEEC
Q psy4818 154 KHFAYCLSKSG-SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVL 232 (734)
Q Consensus 154 ~~la~~~~~~g-~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l 232 (734)
++|||++..+| +..++|||+|.+++.....+.......+++|||||++|+|++... ....++..+.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~-------------~~~~~~~~~~ 70 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------------GRSALVIQTL 70 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-------------SSCEEEEEET
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeec-------------cCcceeeeec
Confidence 78999998864 446789999999887655544443346899999999999998532 2346888888
Q ss_pred CCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce-EEEEE
Q psy4818 233 GTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH-HEIIA 311 (734)
Q Consensus 233 ~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~s 311 (734)
.+.... .+... ......+.|||||+.|++...... ...+........ ............ ...++
T Consensus 71 ~~~~~~--~~~~~---~~~~~~~~~spdg~~i~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 135 (269)
T d2hqsa1 71 ANGAVR--QVASF---PRHNGAPAFSPDGSKLAFALSKTG-SLNLYVMDLASG---------QIRQVTDGRSNNTEPTWF 135 (269)
T ss_dssp TTCCEE--EEECC---SSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTTC---------CEEECCCCSSCEEEEEEC
T ss_pred ccCcee--EEeee---ecccccceecCCCCeeeEeeecCC-ccceeecccccc---------cceeeeeccccccccccc
Confidence 776432 22222 223456899999999998875433 345555554441 111122222222 23488
Q ss_pred ecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeee
Q psy4818 312 NNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHS 391 (734)
Q Consensus 312 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~ 391 (734)
++++.+++.+.+.+ ...|+..+++++. ...++... ..........++..+++....++...+++++...+.. +.
T Consensus 136 ~~~~~~~~~~~~~g-~~~i~~~~~~~~~---~~~~~~~~-~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~ 209 (269)
T d2hqsa1 136 PDSQNLAFTSDQAG-RPQVYKVNINGGA---PQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QV 209 (269)
T ss_dssp TTSSEEEEEECTTS-SCEEEEEETTSSC---CEECCCSS-SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EE
T ss_pred cccccceecccccC-CceEeeeeccccc---ceeeeccc-ccccccccccccceeEEEeecCCceeeeEeecccccc-eE
Confidence 89999998888754 4569999998765 24444332 3333344445657788888888888999999865543 44
Q ss_pred eCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 392 FPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 392 l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+. ..+......++|||+.|+|... ......||++++
T Consensus 210 ~~-~~~~~~~p~~SPDG~~i~f~s~-~~~~~~l~~~~~ 245 (269)
T d2hqsa1 210 LS-STFLDETPSLAPNGTMVIYSSS-QGMGSVLNLVST 245 (269)
T ss_dssp CC-CSSSCEEEEECTTSSEEEEEEE-ETTEEEEEEEET
T ss_pred ee-cCccccceEECCCCCEEEEEEc-CCCCcEEEEEEC
Confidence 43 3333446788999999987643 344568999999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.66 E-value=5e-15 Score=153.17 Aligned_cols=183 Identities=10% Similarity=0.027 Sum_probs=125.0
Q ss_pred cEE-eCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEE
Q psy4818 96 PQR-QENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKD 174 (734)
Q Consensus 96 p~~-~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~d 174 (734)
.+| ||.++.|..+ ..+|+.+..++....+.. ...+..++|||||++|+++....| ..|++||
T Consensus 10 fSP~dG~~~a~~~~------g~v~v~d~~~~~~~~~~~--------~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d 72 (360)
T d1k32a3 10 FSPLDGDLIAFVSR------GQAFIQDVSGTYVLKVPE--------PLRIRYVRRGGDTKVAFIHGTREG---DFLGIYD 72 (360)
T ss_dssp EEECGGGCEEEEET------TEEEEECTTSSBEEECSC--------CSCEEEEEECSSSEEEEEEEETTE---EEEEEEE
T ss_pred ccCCCCCEEEEEEC------CeEEEEECCCCcEEEccC--------CCCEEEEEECCCCCEEEEEEcCCC---CEEEEEE
Confidence 468 8999998652 247887776665444321 234788999999999999887654 4699999
Q ss_pred CCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEE
Q psy4818 175 VDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLH 254 (734)
Q Consensus 175 l~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~ 254 (734)
+++|+.............++|||||+.|++...+. .++.+++.+.... .++... ......
T Consensus 73 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~--~~~~~~ 132 (360)
T d1k32a3 73 YRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF----------------EIMTVDLETGKPT--VIERSR--EAMITD 132 (360)
T ss_dssp TTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS----------------EEEEEETTTCCEE--EEEECS--SSCCCC
T ss_pred CCCCcEEEeeCCCceEEeeeecccccccceecccc----------------cccccccccccee--eeeecc--cccccc
Confidence 99998655443333346889999999999887533 6888888776432 233322 223456
Q ss_pred EEEecCCcEEEEEEecCCC------CceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEeCCC
Q psy4818 255 SEVTDCGRYLLVSTSNNTQ------GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKTTKN 324 (734)
Q Consensus 255 ~~~SpDG~~l~~~~~~~~~------~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~ 324 (734)
++|||||++|++....... ...++++++.++. ...++........ .|+|||+.|++.+++.
T Consensus 133 ~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---------IFAATTENSHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---------EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred hhhccceeeeeeeccccccceeeccccceeeeccccCc---------eeeecccccccccccccCCCCEEEEEeCCC
Confidence 8999999999987654322 2578899998731 2223333222333 4999999999988653
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.66 E-value=2.3e-15 Score=151.69 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=136.1
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+|.+|....+- ++..|.||++||...+.. .|...+...|.++||.|+++|.||.|...... ......
T Consensus 8 g~~~i~y~~~G------~~~~p~vvl~HG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~ 74 (297)
T d1q0ra_ 8 GDVELWSDDFG------DPADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTRD-----FAAHPY 74 (297)
T ss_dssp TTEEEEEEEES------CTTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCCC-----TTTSCC
T ss_pred CCEEEEEEEec------CCCCCEEEEECCCCcChh--HHHHHHHHHHHhCCCEEEEEeCCCCccccccc-----cccccc
Confidence 56666655443 234688999999865543 34444556666679999999999966443111 112234
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-------------ccccC
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN-------------KFTIA 614 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~-------------~~~~~ 614 (734)
.++|+...+..+++. ++.+++.++|||+||.+++.++.++|++++++|+.++........ .....
T Consensus 75 ~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
T d1q0ra_ 75 GFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPG 152 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSCC
T ss_pred ccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhhh
Confidence 677877766666655 345689999999999999999999999999999877653221110 00000
Q ss_pred ccc-----------------------------ccccCCCCCHHHHHHHH----hCC-------------------ccCCC
Q psy4818 615 YYS-----------------------------ESEFGSPNNKTHFHNLL----SYS-------------------PLHNI 642 (734)
Q Consensus 615 ~~~-----------------------------~~~~g~~~~~~~~~~~~----~~s-------------------p~~~~ 642 (734)
... ......+.....+..+. ... ....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (297)
T d1q0ra_ 153 PQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAEL 232 (297)
T ss_dssp CCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGGG
T ss_pred hhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhhh
Confidence 000 00001122222111110 000 00111
Q ss_pred CCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 643 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 643 ~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+ ++++| +|+++|++|..+++.++.++.+.+.. .++++++++||.+..... .+..+.+++||.
T Consensus 233 ~----~i~~P-vlvi~G~~D~~~~~~~~~~~~~~~p~-----------~~~~~i~~~gH~~~~e~p--~~~~~~i~~~l~ 294 (297)
T d1q0ra_ 233 R----EVTVP-TLVIQAEHDPIAPAPHGKHLAGLIPT-----------ARLAEIPGMGHALPSSVH--GPLAEVILAHTR 294 (297)
T ss_dssp G----GCCSC-EEEEEETTCSSSCTTHHHHHHHTSTT-----------EEEEEETTCCSSCCGGGH--HHHHHHHHHHHH
T ss_pred h----ccCCc-eEEEEeCCCCCCCHHHHHHHHHhCCC-----------CEEEEECCCCCcchhhCH--HHHHHHHHHHHH
Confidence 2 26777 99999999999999988777665543 478899999999865444 344445566655
Q ss_pred H
Q psy4818 723 K 723 (734)
Q Consensus 723 ~ 723 (734)
+
T Consensus 295 ~ 295 (297)
T d1q0ra_ 295 S 295 (297)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=9.8e-16 Score=152.04 Aligned_cols=221 Identities=12% Similarity=0.101 Sum_probs=144.6
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc--HHHHHHHHhcCeEEEEEecccCCCCCc
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS--ISRCMFLRHFNGIYAIPNIRGGGELGE 534 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~rG~~~~g~ 534 (734)
++|+++++|. .|..|+..++.+ ..|+|++.||..+......|. ....+.++..|++|++||- |.+.+..
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~-------~~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g-~~~~~y~ 74 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAG-------GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAG-GAYSMYT 74 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECC-------SSSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECC-CTTSTTS
T ss_pred ceEEEEEecccCCceeeEEEECC-------CCCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECC-CCCcCCc
Confidence 3577888875 567888877643 348999999965433222222 2245677788999999984 2233444
Q ss_pred hhhhccccccCCCchhHHHH--HHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc
Q psy4818 535 DWHNAGRLLKKQNCFDDFQA--AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612 (734)
Q Consensus 535 ~~~~~~~~~~~~~~~~D~~~--~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 612 (734)
+|... +...+++++. .+.++.++..+|++|++|+|.||||++++.++.++|++|+++++.+|.+++.......
T Consensus 75 ~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~ 149 (267)
T d1r88a_ 75 NWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNG 149 (267)
T ss_dssp BCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHH
T ss_pred ccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchh
Confidence 44332 2334666654 5777777777899999999999999999999999999999999999988754321100
Q ss_pred c---------CcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC-----------hHHHH
Q psy4818 613 I---------AYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP-----------LHSYK 672 (734)
Q Consensus 613 ~---------~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~-----------~~~~~ 672 (734)
. +......||.+.. ..+.+++|+.+++.. ....+++++.+|.+|..+.. .++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~~--~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~ 223 (267)
T d1r88a_ 150 AIAAGMQQFGGVDTNGMWGAPQL----GRWKWHDPWVHASLL--AQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRM 223 (267)
T ss_dssp HHHHHHHHHHCCCTHHHHCCGGG----STTGGGCTTTTHHHH--HHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHH
T ss_pred hhhhHHhhhcCCcHhhccCCcch----HhHHhcCHHHHHHhc--cccCceEEEEecCCCcccccchhhhhHHHhhhhHHH
Confidence 0 0001112333221 123456777665431 01223489999998876654 23566
Q ss_pred HHHHHHhhhCCCCCCCCcEEEEEeCCCCCCC
Q psy4818 673 FIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 703 (734)
Q Consensus 673 ~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~ 703 (734)
+.++|++. .+.++.+.+.++++|.+
T Consensus 224 ~~~~l~~~------~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 224 FYNQYRSV------GGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHT------TCCSEEEECCSSCCSSH
T ss_pred HHHHHHHc------CCCcEEEEEcCCCeECh
Confidence 77788776 26788888888899975
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.4e-17 Score=155.28 Aligned_cols=193 Identities=13% Similarity=0.011 Sum_probs=121.9
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.+|.+|......|.. +...|.||++||..+....+.... ....|+++||.|+++|+||.| ..-..........
T Consensus 13 v~G~~i~y~~~~~~~---~~~~~~vvllHG~~~~~~~w~~~~-~~~~la~~gy~via~D~~G~G---~S~~~~~~~~~~~ 85 (208)
T d1imja_ 13 VQGQALFFREALPGS---GQARFSVLLLHGIRFSSETWQNLG-TLHRLAQAGYRAVAIDLPGLG---HSKEAAAPAPIGE 85 (208)
T ss_dssp ETTEEECEEEEECSS---SCCSCEEEECCCTTCCHHHHHHHT-HHHHHHHTTCEEEEECCTTSG---GGTTSCCSSCTTS
T ss_pred ECCEEEEEEEecCCC---CCCCCeEEEECCCCCChhHHhhhH-HHHHHHHcCCeEEEeeccccc---CCCCCCcccccch
Confidence 488889887777653 356788999999866544322111 235567789999999999944 2211111111111
Q ss_pred Cc-hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccCcccccccCCCC
Q psy4818 547 NC-FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPN 625 (734)
Q Consensus 547 ~~-~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~ 625 (734)
.. .+++.+.++.+ +.+++.|+|+|+||.+++.++.++|++++++|+.+|+.. .++
T Consensus 86 ~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~--------------~~~---- 141 (208)
T d1imja_ 86 LAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICT--------------DKI---- 141 (208)
T ss_dssp CCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCG--------------GGS----
T ss_pred hhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCcccc--------------ccc----
Confidence 12 22333344433 346789999999999999999999999999999887431 111
Q ss_pred CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4818 626 NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 626 ~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 705 (734)
..+. + .+ +++| +|+++|++|+.+|.. . +.++. -...++.+++++||...-
T Consensus 142 ~~~~---~------~~-------i~~P-~Lii~G~~D~~~~~~--~---~~~~~--------~~~~~~~~i~~~gH~~~~ 191 (208)
T d1imja_ 142 NAAN---Y------AS-------VKTP-ALIVYGDQDPMGQTS--F---EHLKQ--------LPNHRVLIMKGAGHPCYL 191 (208)
T ss_dssp CHHH---H------HT-------CCSC-EEEEEETTCHHHHHH--H---HHHTT--------SSSEEEEEETTCCTTHHH
T ss_pred cccc---c------cc-------cccc-cccccCCcCcCCcHH--H---HHHHh--------CCCCeEEEECCCCCchhh
Confidence 1111 1 12 5566 999999999877643 1 22322 234678899999996422
Q ss_pred chHHhHHHHHHHHHHHH
Q psy4818 706 PLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 706 ~~~~~~~~~~~~~~fl~ 722 (734)
. +..+....+.+||.
T Consensus 192 ~--~p~~~~~~l~~Fl~ 206 (208)
T d1imja_ 192 D--KPEEWHTGLLDFLQ 206 (208)
T ss_dssp H--CHHHHHHHHHHHHH
T ss_pred h--CHHHHHHHHHHHHh
Confidence 1 12355666788886
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.65 E-value=2.4e-15 Score=149.42 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=128.6
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
.+++.||.+|..... +..|+||++||..++.. .|... ...|.++||.|+++|+||.|....
T Consensus 2 ~~~t~dG~~l~y~~~--------G~g~~ivlvHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~S~~-------- 62 (274)
T d1a8qa_ 2 ICTTRDGVEIFYKDW--------GQGRPVVFIHGWPLNGD--AWQDQ-LKAVVDAGYRGIAHDRRGHGHSTP-------- 62 (274)
T ss_dssp EEECTTSCEEEEEEE--------CSSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCC--------
T ss_pred eEECcCCCEEEEEEE--------CCCCeEEEECCCCCCHH--HHHHH-HHHHHHCCCEEEEEeCCCCccccc--------
Confidence 367889988775432 23467888999865543 34443 344555699999999999654321
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh-cCCCceeEEEEcCCcchhcccccc-ccCc-----
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN-QRPELYGAALILVGALDMLRFNKF-TIAY----- 615 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~-~~p~~~~a~v~~~~~~d~~~~~~~-~~~~----- 615 (734)
.......+++...+..+++. ...+++.++|||+||.+++.+++ ..|+++++++...+.......... ....
T Consensus 63 ~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (274)
T d1a8qa_ 63 VWDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVF 140 (274)
T ss_dssp CSSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred ccccccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHHH
Confidence 12234455555544444444 23467999999999998887655 458889988877654322111000 0000
Q ss_pred -------------cc---cccc---CCC---CCHHHHH-------------------HHHhCCccCCCCCCCCCccCCcE
Q psy4818 616 -------------YS---ESEF---GSP---NNKTHFH-------------------NLLSYSPLHNIKVPPNNTQYPAT 654 (734)
Q Consensus 616 -------------~~---~~~~---g~~---~~~~~~~-------------------~~~~~sp~~~~~~p~~~~~~P~~ 654 (734)
.+ ...+ ..+ ......+ .+...+....+.. +++| +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-v 215 (274)
T d1a8qa_ 141 DALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKK----FDIP-T 215 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTT----CCSC-E
T ss_pred HHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHh----ccce-e
Confidence 00 0000 000 0010000 0111111122233 6777 9
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 655 LVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 655 Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
|+++|++|..++++...+..+++. ..+++++++++||...-......+..+.+.+||.+
T Consensus 216 lii~G~~D~~~~~~~~~~~~~~~~----------~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 216 LVVHGDDDQVVPIDATGRKSAQII----------PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp EEEEETTCSSSCGGGTHHHHHHHS----------TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred eeeccCCCCCcCHHHHHHHHHHhC----------CCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 999999999999877554443331 12478999999997543222224556667888853
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1.1e-15 Score=152.92 Aligned_cols=227 Identities=13% Similarity=0.054 Sum_probs=146.9
Q ss_pred ceEEEEEEEcC-CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH--HHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 457 FQTKQVYFRSK-DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI--SRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 457 ~~~~~~~~~s~-dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
+.++.++++|. -|..|++.+. .++.|+|++.||..+......|.. ...+++++.|++|++|+-. .+.+.
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~~-------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~-~~~~~ 75 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQFQ-------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGG-QSSFY 75 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEEE-------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCC-TTCTT
T ss_pred cEEEEEEEecccCCCcceEEee-------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCC-CCCcC
Confidence 46777777775 5778888762 246799999999765433323322 2456788889999999953 33344
Q ss_pred chhhhccccc--cCCCchhHHH--HHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc
Q psy4818 534 EDWHNAGRLL--KKQNCFDDFQ--AAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 609 (734)
Q Consensus 534 ~~~~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 609 (734)
..|+...... .+...+++++ ..+.+|.++..+|++|++|+|+||||++++.++.++|++|+++++.+|.++.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~ 155 (280)
T d1dqza_ 76 TDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESW 155 (280)
T ss_dssp SBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTT
T ss_pred ccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccCc
Confidence 4555443222 2234455543 36677777777899999999999999999999999999999999999988754321
Q ss_pred ccc---------cCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCC-------------
Q psy4818 610 KFT---------IAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPP------------- 667 (734)
Q Consensus 610 ~~~---------~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~------------- 667 (734)
... .+.....-||.+..+ ...+++|+.+++... .+-+++++.+|..|.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~ 229 (280)
T d1dqza_ 156 WPTLIGLAMNDSGGYNANSMWGPSSDP----AWKRNDPMVQIPRLV--ANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLT 229 (280)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHCSTTSH----HHHHTCTTTTHHHHH--HHTCEEEEECCCSCCCTTCCCSHHHHHHHHHH
T ss_pred chhhhhhhHhhccCCCHhhccCCcchh----hhhhcCHHHHHHHhh--hcCCeEEEEeCCCCCccccccccccchhhHHH
Confidence 100 000011123444432 345678887765310 1223489999988765543
Q ss_pred -hHHHHHHHHHHhhhCCCCCCCCc-EEEEEeCCCCCCCC
Q psy4818 668 -LHSYKFIATLQEKIGSLPYQKNP-LLLRVEQDAGHGQG 704 (734)
Q Consensus 668 -~~~~~~~~~L~~~~~~~~~~~~~-~~~~~~~~~gH~~~ 704 (734)
..+.++.++|.++ +.+ +.+...+++||.+.
T Consensus 230 ~~~~~~~~~~l~~~-------g~~~~~~~~~~~GgH~W~ 261 (280)
T d1dqza_ 230 LRTNQTFRDTYAAD-------GGRNGVFNFPPNGTHSWP 261 (280)
T ss_dssp HHHHHHHHHHHHHT-------TCCSEEEECCSCCCSSHH
T ss_pred HHHHHHHHHHHHHc-------CCCeEEEEEcCCCccCch
Confidence 3467788888887 544 44444456789753
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.64 E-value=4.3e-16 Score=150.84 Aligned_cols=211 Identities=17% Similarity=0.147 Sum_probs=121.3
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+..+.||++||..++.. .|.. +++.|+++||.|+++|+||.|......... .......+...++..+...
T Consensus 9 ~~~~~vvliHG~~~~~~--~~~~-l~~~L~~~G~~v~~~D~~G~G~s~~~~~~~----~~~~~~~~~~~~~~~~~~~--- 78 (242)
T d1tqha_ 9 AGERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPPEELVHT----GPDDWWQDVMNGYEFLKNK--- 78 (242)
T ss_dssp CSSCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCHHHHTTC----CHHHHHHHHHHHHHHHHHH---
T ss_pred CCCCeEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEEeCCCCcccccccccc----chhHHHHHHHHHHhhhhhc---
Confidence 34567888999765543 3433 456777789999999999966433211111 1111233444444444433
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc----ccCccccc--------------ccCCC--C
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF----TIAYYSES--------------EFGSP--N 625 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~----~~~~~~~~--------------~~g~~--~ 625 (734)
..++++++|+|+||.++..++.++|.....++ ..+.......... .....+.. .+... .
T Consensus 79 ~~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (242)
T d1tqha_ 79 GYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTM-CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMK 157 (242)
T ss_dssp TCCCEEEEEETHHHHHHHHHHTTSCCSCEEEE-SCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCT
T ss_pred ccCceEEEEcchHHHHhhhhcccCcccccccc-cccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccc
Confidence 44689999999999999999999997644333 3332211000000 00000000 00000 0
Q ss_pred CHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4818 626 NKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 626 ~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 705 (734)
...... .........+.. +..| +|+++|++|..|+++.+.++++.++ +..+++++++++||....
T Consensus 158 ~~~~~~-~~~~~~~~~~~~----~~~p-~lii~g~~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gH~~~~ 222 (242)
T d1tqha_ 158 TLKALQ-ELIADVRDHLDL----IYAP-TFVVQARHDEMINPDSANIIYNEIE---------SPVKQIKWYEQSGHVITL 222 (242)
T ss_dssp THHHHH-HHHHHHHHTGGG----CCSC-EEEEEETTCSSSCTTHHHHHHHHCC---------CSSEEEEEETTCCSSGGG
T ss_pred hhhccc-ccccccccccce----eccc-cceeecccCCccCHHHHHHHHHHcC---------CCCcEEEEECCCCCcCcc
Confidence 000000 000111122332 5556 9999999999999999998887763 345789999999998654
Q ss_pred chHHhHHHHHHHHHHHHH
Q psy4818 706 PLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 706 ~~~~~~~~~~~~~~fl~~ 723 (734)
... ..+..+.+.+||.+
T Consensus 223 ~~~-~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 223 DQE-KDQLHEDIYAFLES 239 (242)
T ss_dssp STT-HHHHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHh
Confidence 322 23566778999875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=4.2e-15 Score=148.45 Aligned_cols=250 Identities=13% Similarity=0.115 Sum_probs=149.7
Q ss_pred EEeCCC--CcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 147 YAFSDN--GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 147 ~~~SPD--G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
+.+||| |++|||+.. | +||++|+++|+..+.+........++|||||++|+|++.... ....
T Consensus 4 ~~~sPdi~G~~v~f~~~--~----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~----------~~~~ 67 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--D----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS----------SLNT 67 (281)
T ss_dssp CCEEEEEETTEEEEEET--T----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST----------TCCE
T ss_pred cccCCCCCCCEEEEEeC--C----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCC----------CCCc
Confidence 467999 999999864 2 599999999997666555444478999999999999986541 1223
Q ss_pred cEEEEEECCCCCCCCeeEEec--CCCCeeEEEEEEecCCcEEEEEEecCCCC--ceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEF--PNGRSLGLHSEVTDCGRYLLVSTSNNTQG--SDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~--~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.+||++++.++....+..... .........+.|||||+.|++........ ..++.++.+++ ......
T Consensus 68 ~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 138 (281)
T d1k32a2 68 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI---------NFVPLN 138 (281)
T ss_dssp EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT---------EEEECC
T ss_pred eEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc---------eeEEec
Confidence 479999988775432211000 00011224678999999999876543332 45666776652 111111
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCC--------ceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 301 PGMDHHHEIIANNGPELIVKTTKNAPK--------GKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 301 ~~~~~~~~~~s~dg~~l~~~s~~~~~~--------~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
.......|.+++..+++........ ............ ...++... ... ....... +.+++....
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~ 210 (281)
T d1k32a2 139 --LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA---FKKIVDMS-THV-SSPVIVG-HRIYFITDI 210 (281)
T ss_dssp --SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE---EEEEECCS-SCC-EEEEEET-TEEEEEECT
T ss_pred --CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc---eeeccCCc-ccc-ceeeeec-cccceeccc
Confidence 1122234778888777765443211 111112221111 12222222 122 2223333 678887777
Q ss_pred CCceeEEEEECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEE
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIF 444 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~ 444 (734)
.+..+|+++|+. |+.+++|+.. ...+ ..+++|+++|++... ..||.+|+ +++ +.+.+
T Consensus 211 ~~~~~l~~~d~~-g~~~~~lt~~~~~~~--~~~SpDG~~I~f~~~-----~~l~~~d~-----~~g--~~~~i 268 (281)
T d1k32a2 211 DGFGQIYSTDLD-GKDLRKHTSFTDYYP--RHLNTDGRRILFSKG-----GSIYIFNP-----DTE--KIEKI 268 (281)
T ss_dssp TSSCEEEEEETT-SCSCEECCCCCSSCE--EEEEESSSCEEEEET-----TEEEEECT-----TTC--CEEEC
T ss_pred ccccceEEEeCC-CCceEEeecCCCccc--ccCcCCCCEEEEEeC-----CEEEEEEC-----CCC--CEEEe
Confidence 888899999995 5445777654 2223 346789999887543 47999999 566 44443
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.61 E-value=3.2e-16 Score=156.95 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=82.3
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
.-||.+|....+-. ....|+||++||+++.+.. |...+..++ ++||.|+++|+||.|... .. ...
T Consensus 8 ~~~g~~i~y~~~g~-----~~~~~~iv~lHG~~g~~~~--~~~~~~~~~-~~~~~vi~~D~~G~G~S~---~~----~~~ 72 (290)
T d1mtza_ 8 KVNGIYIYYKLCKA-----PEEKAKLMTMHGGPGMSHD--YLLSLRDMT-KEGITVLFYDQFGCGRSE---EP----DQS 72 (290)
T ss_dssp EETTEEEEEEEECC-----SSCSEEEEEECCTTTCCSG--GGGGGGGGG-GGTEEEEEECCTTSTTSC---CC----CGG
T ss_pred EECCEEEEEEEcCC-----CCCCCeEEEECCCCCchHH--HHHHHHHHH-HCCCEEEEEeCCCCcccc---cc----ccc
Confidence 35888887655432 2346889999998776543 333333444 469999999999955432 11 112
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
..+++++...+..++++- ...+++.++|||+||.+++.++.++|++++++|+..++.
T Consensus 73 ~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (290)
T d1mtza_ 73 KFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLS 129 (290)
T ss_dssp GCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCS
T ss_pred cccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeeccccc
Confidence 234555555455444331 123589999999999999999999999999999888764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-14 Score=155.83 Aligned_cols=302 Identities=13% Similarity=0.076 Sum_probs=178.1
Q ss_pred CCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC----CceEE
Q psy4818 94 SAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG----SDWNT 169 (734)
Q Consensus 94 ~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g----~~~~~ 169 (734)
..|..++.++| +.+.+ .+++.+..++..++|++...+..- .+..+.|||||++|+|..+... +....
T Consensus 22 ~~W~~~~~~~~--~~~~g----~i~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~ 92 (465)
T d1xfda1 22 AKWISDTEFIY--REQKG----TVRLWNVETNTSTVLIEGKKIESL---RAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (465)
T ss_dssp CCBSSSSCBCC--CCSSS----CEEEBCGGGCCCEEEECTTTTTTT---TCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred CEEeCCCcEEE--EeCCC----cEEEEECCCCCEEEEEcCcccccc---ccceeEECCCCCeEEEEEcccceeEeecccc
Confidence 44555665443 22222 267777777888899998766432 2457899999999999886432 12247
Q ss_pred EEEEECCCCCcccccc---cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC
Q psy4818 170 LHIKDVDTGKDYPEVL---KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP 246 (734)
Q Consensus 170 l~v~dl~~g~~~~~~~---~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~ 246 (734)
++++|+++|...+... .......+.|||||+.|+|++.. .||+.+..++... .++....
T Consensus 93 ~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~-----------------nl~~~~~~~~~~~-~lt~~g~ 154 (465)
T d1xfda1 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-----------------NIYYCAHVGKQAI-RVVSTGK 154 (465)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-----------------EEEEESSSSSCCE-EEECCCB
T ss_pred EEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecc-----------------eEEEEecCCCceE-EEecccC
Confidence 9999999998544322 22223468999999999999842 5787776654321 1122111
Q ss_pred CCC---------------eeEEEEEEecCCcEEEEEEecCCCC------------------------------ceEEEEe
Q psy4818 247 NGR---------------SLGLHSEVTDCGRYLLVSTSNNTQG------------------------------SDLHYFD 281 (734)
Q Consensus 247 ~~~---------------~~~~~~~~SpDG~~l~~~~~~~~~~------------------------------~~i~~~d 281 (734)
.+. ....++.|||||++|+|........ ..++++|
T Consensus 155 ~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d 234 (465)
T d1xfda1 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (465)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred cceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEe
Confidence 111 0124678999999999975321110 2577888
Q ss_pred CCCCCCCcccCCCCceeeeccccceE--E-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCcee---
Q psy4818 282 LHSLPDGKISGKFPLKTVIPGMDHHH--E-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTL--- 355 (734)
Q Consensus 282 ~~~~~~~~l~~~~~~~~l~~~~~~~~--~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~--- 355 (734)
++++...... .+.. ... ....+ . .|++|++.+++..++......|+.+|..++. ++.++.+....-+
T Consensus 235 ~~~~~~~~~~--~~~~-~~~-~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~---~~~~~~e~~~~wv~~~ 307 (465)
T d1xfda1 235 LNGPTHDLEM--MPPD-DPR-MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQ 307 (465)
T ss_dssp SSSSCCCEEC--CCCC-CGG-GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCC
T ss_pred cCCCcEEEEE--eccC-cCc-cccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc---EEEEEEEcCCceEecc
Confidence 8763211100 0000 000 01111 2 2888887667777887777789999998876 4555543322111
Q ss_pred --EEEEEeeCCEEEEE--EEeCCceeEEEEECC------CCceeeeeCCCCceEEee-ccCcccceEEEEEecCCCCce-
Q psy4818 356 --DVVAAVANNKLIVH--YIQNVRSVMDLHDLN------TGKRLHSFPLDLGQITHI-SGRRKYNEVFYGFTSFLQPGT- 423 (734)
Q Consensus 356 --~~~~~~~~~~l~~~--~~~~~~~~l~~~dl~------~g~~~~~l~~~~g~v~~~-~~~~d~~~l~~~~ss~~~P~~- 423 (734)
......+++.+++. ...++..+++.+.+. +|+..+.|+.....|..+ .++.+++.++|..+ ...|.+
T Consensus 308 ~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~-~~~p~~~ 386 (465)
T d1xfda1 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST-EDLPRRR 386 (465)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES-SSCTTCC
T ss_pred CCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEe-CCCCCce
Confidence 12333454555443 345667778877542 344456777655555443 46677778887654 455654
Q ss_pred -EEEEeCC
Q psy4818 424 -IYHCNIP 430 (734)
Q Consensus 424 -~~~~d~~ 430 (734)
+|++++.
T Consensus 387 hly~v~l~ 394 (465)
T d1xfda1 387 QLYSANTV 394 (465)
T ss_dssp EEEEECSS
T ss_pred EEEEEECC
Confidence 7888873
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.60 E-value=2.3e-15 Score=150.46 Aligned_cols=224 Identities=15% Similarity=0.059 Sum_probs=125.0
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
++..++....-+ ...|+||++||..+.... ..|.. ....|++ ||.|+++|.||.|... ..........
T Consensus 12 ~~~~~h~~~~G~------~~~p~ivllHG~~~~~~~~~~~~~-~~~~L~~-~~~vi~~D~~G~G~S~---~~~~~~~~~~ 80 (281)
T d1c4xa_ 12 GTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRP-IIPDLAE-NFFVVAPDLIGFGQSE---YPETYPGHIM 80 (281)
T ss_dssp TTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGG-GHHHHHT-TSEEEEECCTTSTTSC---CCSSCCSSHH
T ss_pred CCEEEEEEEEec------CCCCEEEEECCCCCCCcHHHHHHH-HHHHHhC-CCEEEEEeCCCCcccc---ccccccccch
Confidence 445566554322 346899999997554332 22333 3456664 9999999999955332 1110000001
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc--------ccccCccc-
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN--------KFTIAYYS- 617 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~--------~~~~~~~~- 617 (734)
..+++....+..++++ ...+++.++|||+||.+++.++.++|++++++|+..+........ .......+
T Consensus 81 ~~~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
T d1c4xa_ 81 SWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLT 158 (281)
T ss_dssp HHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHH
T ss_pred hhHHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccc
Confidence 1233444333333333 233579999999999999999999999999999887753211110 00000000
Q ss_pred -----cccc-CCCCC----HHHHH----------------HH-Hh--------CCccCCCCCCCCCccCCcEEEEecCCC
Q psy4818 618 -----ESEF-GSPNN----KTHFH----------------NL-LS--------YSPLHNIKVPPNNTQYPATLVLTGDHD 662 (734)
Q Consensus 618 -----~~~~-g~~~~----~~~~~----------------~~-~~--------~sp~~~~~~p~~~~~~P~~Li~~g~~D 662 (734)
...+ ..+.. ..... .+ .. ..+...+. .++.| +|+++|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~P-~lii~G~~D 233 (281)
T d1c4xa_ 159 PYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLG----RLPHD-VLVFHGRQD 233 (281)
T ss_dssp HHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHT----TCCSC-EEEEEETTC
T ss_pred hhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhh----hhccc-eEEEEeCCC
Confidence 0001 11110 00000 00 00 00001122 26667 999999999
Q ss_pred CCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 663 DRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 663 ~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
..+|+..+.++.+.+. ..++++++++||...-... .+....+.+||.
T Consensus 234 ~~~~~~~~~~~~~~~~-----------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 234 RIVPLDTSLYLTKHLK-----------HAELVVLDRCGHWAQLERW--DAMGPMLMEHFR 280 (281)
T ss_dssp SSSCTHHHHHHHHHCS-----------SEEEEEESSCCSCHHHHSH--HHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHCC-----------CCEEEEECCCCCchHHhCH--HHHHHHHHHHhC
Confidence 9999988877766553 2478899999997643222 345566778875
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.60 E-value=1.5e-14 Score=138.73 Aligned_cols=191 Identities=17% Similarity=0.193 Sum_probs=121.8
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhc--CeEEEEEecc------cCCCCCchhhhcccccc-CCCchhHHHHH-
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPNIR------GGGELGEDWHNAGRLLK-KQNCFDDFQAA- 555 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~r------G~~~~g~~~~~~~~~~~-~~~~~~D~~~~- 555 (734)
.+.|+||++||..+.. ..|.. ....|.+. ++.+++++-+ +++..+..|+....... .....+++.+.
T Consensus 12 ~~~~~Vi~lHG~G~~~--~~~~~-~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 88 (218)
T d1auoa_ 12 PADACVIWLHGLGADR--YDFMP-VAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSA 88 (218)
T ss_dssp CCSEEEEEECCTTCCT--TTTHH-HHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCh--hhHHH-HHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHH
Confidence 4567999999953322 23332 33444432 4566655421 12222345665322211 12233334332
Q ss_pred --HHHHHH---cCCCCCCcEEEEEcChHHHHHHHHH-hcCCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHH
Q psy4818 556 --AEYMIN---KKYTKPKYITIMGGSNGGLLVGACL-NQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTH 629 (734)
Q Consensus 556 --~~~l~~---~~~~d~~ri~i~G~S~GG~~~~~~~-~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~ 629 (734)
+..+++ +..+|++|++++|+|+||.+++.++ .+.+..|+++|+.++....... .......
T Consensus 89 ~~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~--------------~~~~~~~ 154 (218)
T d1auoa_ 89 KMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGD--------------ELELSAS 154 (218)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCT--------------TCCCCHH
T ss_pred HHHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccc--------------ccccchh
Confidence 333322 2347999999999999999998875 4556789999998875421100 0000000
Q ss_pred HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHH
Q psy4818 630 FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMK 709 (734)
Q Consensus 630 ~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 709 (734)
. .+.| +|++||+.|.+||++++.++++.|+++ |.+++++.|+ .||.+.
T Consensus 155 --------------~----~~~p-vl~~hG~~D~vvp~~~~~~~~~~L~~~-------g~~~~~~~~~-~gH~i~----- 202 (218)
T d1auoa_ 155 --------------Q----QRIP-ALCLHGQYDDVVQNAMGRSAFEHLKSR-------GVTVTWQEYP-MGHEVL----- 202 (218)
T ss_dssp --------------H----HTCC-EEEEEETTCSSSCHHHHHHHHHHHHTT-------TCCEEEEEES-CSSSCC-----
T ss_pred --------------c----cCCC-EEEEecCCCCccCHHHHHHHHHHHHHC-------CCCEEEEEEC-CCCccC-----
Confidence 0 2334 999999999999999999999999998 9999999997 689875
Q ss_pred hHHHHHHHHHHHHHHcC
Q psy4818 710 SIEEMTDIYVFLMKSLG 726 (734)
Q Consensus 710 ~~~~~~~~~~fl~~~l~ 726 (734)
.+....+.+||.+.||
T Consensus 203 -~~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 203 -PQEIHDIGAWLAARLG 218 (218)
T ss_dssp -HHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhcC
Confidence 2446678999999886
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.60 E-value=7.6e-15 Score=145.73 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=132.0
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
++++.||.+|+...+-|+ ..|+||++||.++... .|... ...|.++||.|+++|+||.|....
T Consensus 2 ~i~~~dG~~l~y~~~G~~------~~~~vv~lHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~s~~-------- 64 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPR------DGLPVVFHHGWPLSAD--DWDNQ-MLFFLSHGYRVIAHDRRGHGRSDQ-------- 64 (275)
T ss_dssp EEECTTSCEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCC--------
T ss_pred EEEecCCCEEEEEEecCC------CCCeEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEEeccccccccc--------
Confidence 467899999988777653 2467889999876544 34433 345555799999999999554321
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcCh-HHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC-------
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN-GGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA------- 614 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~-GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~------- 614 (734)
.....+++++.+.+..+++. .+.+++.++|+|+ ||.++..++.++|++++.+|+..+.............
T Consensus 65 ~~~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 142 (275)
T d1a88a_ 65 PSTGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVF 142 (275)
T ss_dssp CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHH
T ss_pred cccccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 11234556665555555544 2445788889887 6666676788899999999887654211100000000
Q ss_pred ------------ccc-------ccccC--CC-CCHHHHH----------------H---HHhCCccCCCCCCCCCccCCc
Q psy4818 615 ------------YYS-------ESEFG--SP-NNKTHFH----------------N---LLSYSPLHNIKVPPNNTQYPA 653 (734)
Q Consensus 615 ------------~~~-------~~~~g--~~-~~~~~~~----------------~---~~~~sp~~~~~~p~~~~~~P~ 653 (734)
..+ ...+. .. ......+ . +........+.. ++.|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P- 217 (275)
T d1a88a_ 143 DEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKR----IDVP- 217 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHH----CCSC-
T ss_pred hhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHh----hccc-
Confidence 000 00000 00 0111110 0 111111112222 5677
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 654 TLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 654 ~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+|+++|++|..+|+.+..+..+++ ...+++++++++||....... .+..+.+.+||.
T Consensus 218 ~l~i~G~~D~~~~~~~~~~~~~~~----------~~~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 218 VLVAHGTDDQVVPYADAAPKSAEL----------LANATLKSYEGLPHGMLSTHP--EVLNPDLLAFVK 274 (275)
T ss_dssp EEEEEETTCSSSCSTTTHHHHHHH----------STTEEEEEETTCCTTHHHHCH--HHHHHHHHHHHH
T ss_pred cceeecCCCCCcCHHHHHHHHHHh----------CCCCEEEEECCCCCchHHhCH--HHHHHHHHHHHc
Confidence 999999999999988765554433 234688999999997644322 456677888875
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.60 E-value=9.5e-15 Score=148.71 Aligned_cols=125 Identities=16% Similarity=0.074 Sum_probs=89.2
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
++-.+++.||.+|....+-++ +.|.||++||++++...+... ..+...||.|+++|.||.|... ..
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~------~g~pvvllHG~~g~~~~~~~~----~~~l~~~~~Vi~~D~rG~G~S~---~~- 77 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNP------HGKPVVMLHGGPGGGCNDKMR----RFHDPAKYRIVLFDQRGSGRST---PH- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECT------TSEEEEEECSTTTTCCCGGGG----GGSCTTTEEEEEECCTTSTTSB---ST-
T ss_pred CCCEEEeCCCcEEEEEEecCC------CCCEEEEECCCCCCccchHHH----hHHhhcCCEEEEEeccccCCCC---cc-
Confidence 556667789988877655422 346678899998766554332 2223469999999999944321 11
Q ss_pred cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 540 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.......++++...+..++++ ...+++.|+|||+||.+++.++.++|++++++|+.++.
T Consensus 78 --~~~~~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 136 (313)
T d1azwa_ 78 --ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp --TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --ccccchhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccc
Confidence 123345677777777777766 34467999999999999999999999999999887764
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.60 E-value=3.3e-15 Score=139.52 Aligned_cols=179 Identities=13% Similarity=0.014 Sum_probs=112.6
Q ss_pred EEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCc
Q psy4818 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569 (734)
Q Consensus 490 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 569 (734)
.||++||..++... .|...+...|+++||.|+++|++|++.. ..+|++..++.+.. ....+
T Consensus 3 ~V~~vHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~p~~~~~---------------~~~~~~~~l~~~~~---~~~~~ 63 (186)
T d1uxoa_ 3 QVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQH---TLHEN 63 (186)
T ss_dssp EEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTGG---GCCTT
T ss_pred EEEEECCCCCCcch-hHHHHHHHHHHhCCCEEEEeccCCCCcc---------------hHHHHHHHHHHHHh---ccCCC
Confidence 48889997554433 3333456777888999999999985421 24566555555443 45578
Q ss_pred EEEEEcChHHHHHHHHHhcCCCce--eEEEEcCCcchhccccccccCccccccc-CCCCCHHHHHHHHhCCccCCCCCCC
Q psy4818 570 ITIMGGSNGGLLVGACLNQRPELY--GAALILVGALDMLRFNKFTIAYYSESEF-GSPNNKTHFHNLLSYSPLHNIKVPP 646 (734)
Q Consensus 570 i~i~G~S~GG~~~~~~~~~~p~~~--~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~p~ 646 (734)
+.++|||+||++++.++.++|+.. .++++.+|+........ ....+ ..+...... . .
T Consensus 64 ~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~---------~-- 123 (186)
T d1uxoa_ 64 TYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ------MLDEFTQGSFDHQKI---I---------E-- 123 (186)
T ss_dssp EEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCG------GGGGGTCSCCCHHHH---H---------H--
T ss_pred cEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhh------hhhhhhccccccccc---c---------c--
Confidence 999999999999999999988743 44445555443221110 00111 111211111 0 1
Q ss_pred CCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH-HhHHHHHHHHHHHH
Q psy4818 647 NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM-KSIEEMTDIYVFLM 722 (734)
Q Consensus 647 ~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~ 722 (734)
...| +|++||++|++||+++++++++++. .++++++++||....... ..-+....+.+||.
T Consensus 124 --~~~p-~lvi~g~~D~~vp~~~~~~l~~~~~------------~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~ 185 (186)
T d1uxoa_ 124 --SAKH-RAVIASKDDQIVPFSFSKDLAQQID------------AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 185 (186)
T ss_dssp --HEEE-EEEEEETTCSSSCHHHHHHHHHHTT------------CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred --CCCC-EEEEecCCCCCCCHHHHHHHHHHcC------------CEEEEeCCCCCcCccccCcccHHHHHHHHHHHc
Confidence 2334 9999999999999999999887662 268899999997643221 11234445666664
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.4e-14 Score=147.57 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=85.6
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
.++..||.+|+.... |..|+||++||.+++... |.. .+..|+++||.|+++|.||.|... .. .
T Consensus 15 ~v~~~~g~~i~y~~~--------G~gp~vlllHG~~~~~~~--~~~-~~~~L~~~g~~vi~~D~~G~G~S~---~~---~ 77 (322)
T d1zd3a2 15 YVTVKPRVRLHFVEL--------GSGPAVCLCHGFPESWYS--WRY-QIPALAQAGYRVLAMDMKGYGESS---AP---P 77 (322)
T ss_dssp EEEEETTEEEEEEEE--------CCSSEEEEECCTTCCGGG--GTT-HHHHHHHTTCEEEEEECTTSTTSC---CC---S
T ss_pred EEEECCCCEEEEEEE--------cCCCeEEEECCCCCCHHH--HHH-HHHHHHHCCCEEEEeccccccccc---cc---c
Confidence 345568988776432 234889999998766543 443 345666679999999999954321 11 1
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
......++++...+..++++ .+.+++.++|||+||.+++.++.++|++++++|+..+
T Consensus 78 ~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 78 EIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp CGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred ccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 11234567777777777665 3456899999999999999999999999999987653
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=6.7e-15 Score=145.98 Aligned_cols=220 Identities=15% Similarity=0.064 Sum_probs=131.3
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
.+|.++..... |..|.||++||..+.... ..|.. ....|+ .||.|+++|.||.|..... ...
T Consensus 10 ~~G~~~~Y~~~--------G~G~pvvllHG~~~~~~~~~~~~~-~~~~l~-~~~~vi~~Dl~G~G~S~~~-------~~~ 72 (271)
T d1uk8a_ 10 AAGVLTNYHDV--------GEGQPVILIHGSGPGVSAYANWRL-TIPALS-KFYRVIAPDMVGFGFTDRP-------ENY 72 (271)
T ss_dssp ETTEEEEEEEE--------CCSSEEEEECCCSTTCCHHHHHTT-THHHHT-TTSEEEEECCTTSTTSCCC-------TTC
T ss_pred ECCEEEEEEEE--------eeCCeEEEECCCCCCccHHHHHHH-HHHHHh-CCCEEEEEeCCCCCCcccc-------ccc
Confidence 47877764321 234678889997554322 12332 235565 4999999999996543211 122
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc-------ccccCccc-
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN-------KFTIAYYS- 617 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~-------~~~~~~~~- 617 (734)
...++++...+..+++. .+.+++.++|||+||.+++.++.++|+.++++|+..+........ ........
T Consensus 73 ~~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (271)
T d1uk8a_ 73 NYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENM 150 (271)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHH
T ss_pred cccccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHHH
Confidence 34567777777777766 345689999999999999999999999999999877643211100 00000000
Q ss_pred ---ccccCCC---CCHH-------------HHHHHHhCC-------------ccCCCCCCCCCccCCcEEEEecCCCCCC
Q psy4818 618 ---ESEFGSP---NNKT-------------HFHNLLSYS-------------PLHNIKVPPNNTQYPATLVLTGDHDDRV 665 (734)
Q Consensus 618 ---~~~~g~~---~~~~-------------~~~~~~~~s-------------p~~~~~~p~~~~~~P~~Li~~g~~D~~v 665 (734)
...+... .... ..+.+.... ....+.. ++.| +|+++|++|..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~ 225 (271)
T d1uk8a_ 151 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKT----LPNE-TLIIHGREDQVV 225 (271)
T ss_dssp HHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTT----CCSC-EEEEEETTCSSS
T ss_pred HHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHh----hccc-eeEEecCCCCCc
Confidence 0000000 0000 000111111 1112222 6677 999999999999
Q ss_pred CChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 666 PPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 666 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
|+..+..+.+.+. .+++++++++||....... .+..+.+.+||.+
T Consensus 226 ~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 226 PLSSSLRLGELID-----------RAQLHVFGRCGHWTQIEQT--DRFNRLVVEFFNE 270 (271)
T ss_dssp CHHHHHHHHHHCT-----------TEEEEEESSCCSCHHHHTH--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCC-----------CCEEEEECCCCCchHHHCH--HHHHHHHHHHHhc
Confidence 9988777766553 2478999999997543222 3556678888875
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.59 E-value=1e-14 Score=144.40 Aligned_cols=220 Identities=18% Similarity=0.125 Sum_probs=130.4
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCC-ccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVL-PTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
.||.++... .. |..|.||++||..+.... ..|... ...|+ +||.|+++|.||.|... ....
T Consensus 9 ~dg~~l~y~---~~-----G~g~~vvllHG~~~~~~~~~~~~~~-~~~l~-~~~~v~~~D~~G~G~S~--------~~~~ 70 (268)
T d1j1ia_ 9 AGGVETRYL---EA-----GKGQPVILIHGGGAGAESEGNWRNV-IPILA-RHYRVIAMDMLGFGKTA--------KPDI 70 (268)
T ss_dssp ETTEEEEEE---EE-----CCSSEEEEECCCSTTCCHHHHHTTT-HHHHT-TTSEEEEECCTTSTTSC--------CCSS
T ss_pred ECCEEEEEE---EE-----cCCCeEEEECCCCCCccHHHHHHHH-HHHHh-cCCEEEEEccccccccc--------CCcc
Confidence 489888643 22 234668899998654322 223332 35565 49999999999965432 1122
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccccc---ccCccc-----
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKF---TIAYYS----- 617 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~---~~~~~~----- 617 (734)
...++++...+..+++.-..+ +++.++|+|+||.+++.++.++|++++++|+..|..-....... .....+
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~~-~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNFD-GKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCCS-SCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhhc-ccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 345666666666655542222 46899999999999999999999999999987764221111000 000000
Q ss_pred ---cccc---CCCCCHHH--------------------HHHHHhCCcc----CCCCCCCCCccCCcEEEEecCCCCCCCC
Q psy4818 618 ---ESEF---GSPNNKTH--------------------FHNLLSYSPL----HNIKVPPNNTQYPATLVLTGDHDDRVPP 667 (734)
Q Consensus 618 ---~~~~---g~~~~~~~--------------------~~~~~~~sp~----~~~~~p~~~~~~P~~Li~~g~~D~~v~~ 667 (734)
...+ +.....+. ...+....-. ..++. ++.| +|+++|++|..+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~l~i~G~~D~~~~~ 224 (268)
T d1j1ia_ 150 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRK----VQVP-TLVVQGKDDKVVPV 224 (268)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTT----CCSC-EEEEEETTCSSSCH
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhh----CCCC-EEEEEeCCCCCCCH
Confidence 0000 00001000 0011111111 11222 6677 99999999999998
Q ss_pred hHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 668 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
+.+.++.+.+. .+++++++++||....... .+....+.+||.+
T Consensus 225 ~~~~~~~~~~~-----------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 225 ETAYKFLDLID-----------DSWGYIIPHCGHWAMIEHP--EDFANATLSFLSL 267 (268)
T ss_dssp HHHHHHHHHCT-----------TEEEEEESSCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----------CCEEEEECCCCCchHHhCH--HHHHHHHHHHHcC
Confidence 88777666553 3588999999998643222 3566678889875
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.58 E-value=3.1e-14 Score=141.07 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=130.2
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
+|++.||.+|..... |..|.||++||.++... .|... ...|.++||.|+++|.||.|....
T Consensus 2 ~f~~~dG~~i~y~~~--------G~g~pvvllHG~~~~~~--~~~~~-~~~l~~~~~~vi~~D~~G~G~S~~-------- 62 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW--------GSGQPIVFSHGWPLNAD--SWESQ-MIFLAAQGYRVIAHDRRGHGRSSQ-------- 62 (273)
T ss_dssp EEECTTSCEEEEEEE--------SCSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCC--------
T ss_pred EEEeeCCcEEEEEEE--------CCCCeEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEEechhcCcccc--------
Confidence 577889988865432 23466788999866544 34443 355555699999999999654321
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHH-HHhcCCCceeEEEEcCCcchhccccccccCcc-----
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA-CLNQRPELYGAALILVGALDMLRFNKFTIAYY----- 616 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~-~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~----- 616 (734)
.....+++++...+..+++. .+.++..++|+|+||.+++. ++.++|++++.+++..+...............
T Consensus 63 ~~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
T d1a8sa_ 63 PWSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVF 140 (273)
T ss_dssp CSSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred ccccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhh
Confidence 12234566666666655554 34456889999998765555 55567998888877665432111100000000
Q ss_pred -------------c--------ccccCCC---CCHHHHH-------------------HHHhCCccCCCCCCCCCccCCc
Q psy4818 617 -------------S--------ESEFGSP---NNKTHFH-------------------NLLSYSPLHNIKVPPNNTQYPA 653 (734)
Q Consensus 617 -------------~--------~~~~g~~---~~~~~~~-------------------~~~~~sp~~~~~~p~~~~~~P~ 653 (734)
. ...+..+ ......+ .+...+....++. ++.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~P- 215 (273)
T d1a8sa_ 141 DGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKK----IDVP- 215 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHT----CCSC-
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHh----hccc-
Confidence 0 0000001 1111111 1112222222333 6777
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 654 TLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 654 ~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+|+++|++|..+|+..+.++.+++. ..+++++++++||....... .+..+.+.+||.
T Consensus 216 vlii~g~~D~~~~~~~~~~~~~~~~----------~~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 216 TLVVHGDADQVVPIEASGIASAALV----------KGSTLKIYSGAPHGLTDTHK--DQLNADLLAFIK 272 (273)
T ss_dssp EEEEEETTCSSSCSTTTHHHHHHHS----------TTCEEEEETTCCSCHHHHTH--HHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCHHHHHHHHHHhC----------CCCEEEEECCCCCchHHhCH--HHHHHHHHHHcC
Confidence 9999999999999988777766552 23477889999997643322 355666788874
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.57 E-value=6.1e-15 Score=147.44 Aligned_cols=209 Identities=12% Similarity=0.007 Sum_probs=120.9
Q ss_pred CCcEEEEecCCCCCcCCcc-ccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPT-FSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
..|+||++||.......+. +...+..++. +||.|+++|.||.|.... . ........+..+.+..++++ .
T Consensus 29 ~G~~ivllHG~~~~~~~~~~~~~~l~~~~~-~g~~v~~~D~~G~G~S~~---~----~~~~~~~~~~~~~i~~li~~--l 98 (283)
T d2rhwa1 29 NGETVIMLHGGGPGAGGWSNYYRNVGPFVD-AGYRVILKDSPGFNKSDA---V----VMDEQRGLVNARAVKGLMDA--L 98 (283)
T ss_dssp CSSEEEEECCCSTTCCHHHHHTTTHHHHHH-TTCEEEEECCTTSTTSCC---C----CCSSCHHHHHHHHHHHHHHH--H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHHHH-CCCEEEEEeCCCCccccc---c----cccccccchhhhhccccccc--c
Confidence 3478899999765544321 1222334454 699999999999554321 1 11112222333344444443 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccccC------------c---cc---ccccC-CC--
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA------------Y---YS---ESEFG-SP-- 624 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~------------~---~~---~~~~g-~~-- 624 (734)
+.+++.++|||+||.+++.++.++|+.++++|+..|..-.......... . .+ ...+. .+
T Consensus 99 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (283)
T d2rhwa1 99 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 178 (283)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccccc
Confidence 3457999999999999999999999999999988764311111000000 0 00 00000 00
Q ss_pred CCHHH----HHHH-------------------HhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q psy4818 625 NNKTH----FHNL-------------------LSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681 (734)
Q Consensus 625 ~~~~~----~~~~-------------------~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~ 681 (734)
...+. +..+ ...+....+.. +++| +|+++|++|..+++.++.++.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~~~~~~~~~~~~~~--- 250 (283)
T d2rhwa1 179 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE----IKAK-TFITWGRDDRFVPLDHGLKLLWNID--- 250 (283)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGG----CCSC-EEEEEETTCSSSCTHHHHHHHHHSS---
T ss_pred CcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhh----CCCC-EEEEEeCCCCCcCHHHHHHHHHhCC---
Confidence 01110 0000 00111122222 6777 9999999999999999888776653
Q ss_pred CCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 682 GSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
.+++++++++||....... .+..+.+.+||.+
T Consensus 251 --------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 251 --------DARLHVFSKCGHWAQWEHA--DEFNRLVIDFLRH 282 (283)
T ss_dssp --------SEEEEEESSCCSCHHHHTH--HHHHHHHHHHHHH
T ss_pred --------CCEEEEECCCCCchHHhCH--HHHHHHHHHHHhC
Confidence 2478899999997643322 3556667888864
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.57 E-value=9.9e-15 Score=144.34 Aligned_cols=222 Identities=20% Similarity=0.171 Sum_probs=131.5
Q ss_pred EEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhcccc
Q psy4818 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL 542 (734)
Q Consensus 463 ~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~ 542 (734)
+|.+.||.+|..... |..|+||++||++++.. .|.. ....|+++||.|+++|+||.|... .
T Consensus 2 ~f~~~dG~~l~y~~~--------G~g~~vv~lHG~~~~~~--~~~~-~~~~l~~~g~~vi~~D~~G~G~S~--------~ 62 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW--------GSGKPVLFSHGWLLDAD--MWEY-QMEYLSSRGYRTIAFDRRGFGRSD--------Q 62 (271)
T ss_dssp EEECTTSCEEEEEEE--------SSSSEEEEECCTTCCGG--GGHH-HHHHHHTTTCEEEEECCTTSTTSC--------C
T ss_pred EEEeECCeEEEEEEE--------cCCCeEEEECCCCCCHH--HHHH-HHHHHHhCCCEEEEEecccccccc--------c
Confidence 466789998865322 23466788999866543 3443 345676679999999999955432 1
Q ss_pred ccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHH-HHhcCCCceeEEEEcCCcchhccccccc---cCcc--
Q psy4818 543 LKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA-CLNQRPELYGAALILVGALDMLRFNKFT---IAYY-- 616 (734)
Q Consensus 543 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~-~~~~~p~~~~a~v~~~~~~d~~~~~~~~---~~~~-- 616 (734)
......++++...+..+.+. ++.+++.++|+|.||.+++. ++.++|++++.+++..+........... ....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 140 (271)
T d1va4a_ 63 PWTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVF 140 (271)
T ss_dssp CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHH
T ss_pred cccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHH
Confidence 12234566666666665554 35568999999998876654 5667899999998877654322111000 0000
Q ss_pred -------------ccc-----ccC----CCCCHH----------------H---HHHHHhCCccCCCCCCCCCccCCcEE
Q psy4818 617 -------------SES-----EFG----SPNNKT----------------H---FHNLLSYSPLHNIKVPPNNTQYPATL 655 (734)
Q Consensus 617 -------------~~~-----~~g----~~~~~~----------------~---~~~~~~~sp~~~~~~p~~~~~~P~~L 655 (734)
+.. .++ ...... . ...+........+.. ++.| +|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-vl 215 (271)
T d1va4a_ 141 ARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAK----IDVP-TL 215 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHH----CCSC-EE
T ss_pred HHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhh----cccc-ee
Confidence 000 000 000000 0 001111111112222 5667 99
Q ss_pred EEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 656 VLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 656 i~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
+++|++|..+++..+.++.+++.. .+++++++++||....... .+..+.+.+||.
T Consensus 216 ~i~g~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fL~ 270 (271)
T d1va4a_ 216 VIHGDGDQIVPFETTGKVAAELIK----------GAELKVYKDAPHGFAVTHA--QQLNEDLLAFLK 270 (271)
T ss_dssp EEEETTCSSSCGGGTHHHHHHHST----------TCEEEEETTCCTTHHHHTH--HHHHHHHHHHHT
T ss_pred ecccCCCCCCCHHHHHHHHHHhCC----------CCEEEEECCCCCchHHhCH--HHHHHHHHHHHC
Confidence 999999999999888877765521 2478889999997643222 355566778875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=6.7e-13 Score=132.04 Aligned_cols=246 Identities=10% Similarity=0.056 Sum_probs=149.4
Q ss_pred EEe--CCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCc-eEEEEEE
Q psy4818 97 QRQ--ENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSD-WNTLHIK 173 (734)
Q Consensus 97 ~~~--g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~-~~~l~v~ 173 (734)
+|| |++++|++.. .||+.+..+++.+.|++.. .....++|||||++|||.....+.. ..+||++
T Consensus 7 sPdi~G~~v~f~~~~------dl~~~d~~~g~~~~Lt~~~-------~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~ 73 (281)
T d1k32a2 7 NPDIHGDRIIFVCCD------DLWEHDLKSGSTRKIVSNL-------GVINNARFFPDGRKIAIRVMRGSSLNTADLYFY 73 (281)
T ss_dssp EEEEETTEEEEEETT------EEEEEETTTCCEEEEECSS-------SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred CCCCCCCEEEEEeCC------cEEEEECCCCCEEEEecCC-------CcccCEEECCCCCEEEEEEeeCCCCCceEEEEE
Confidence 577 9999998632 3999998889988887743 2367899999999999998766554 4689999
Q ss_pred ECCCCCccccccccc-------ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC
Q psy4818 174 DVDTGKDYPEVLKNV-------KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP 246 (734)
Q Consensus 174 dl~~g~~~~~~~~~~-------~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~ 246 (734)
++.+|+..+.+.... ....+.|||||+.|+|+..... ......++.++..+... . ...
T Consensus 74 ~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~----~-~~~ 138 (281)
T d1k32a2 74 NGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP----------FSSMTCLYRVENDGINF----V-PLN 138 (281)
T ss_dssp ETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS----------STTCCEEEEEEGGGTEE----E-ECC
T ss_pred EecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCC----------CccceeeeeecCCCcee----E-Eec
Confidence 999998654432211 1246789999999999865331 12233456666554421 1 111
Q ss_pred CCCeeEEEEEEecCCcEEEEEEecCCCC--------ceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEE
Q psy4818 247 NGRSLGLHSEVTDCGRYLLVSTSNNTQG--------SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318 (734)
Q Consensus 247 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~--------~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~ 318 (734)
... ....|++||+.+++........ .......... ......+........ ....++.++
T Consensus 139 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~ 205 (281)
T d1k32a2 139 LGP---ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS---------GAFKKIVDMSTHVSS-PVIVGHRIY 205 (281)
T ss_dssp SCS---CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET---------TEEEEEECCSSCCEE-EEEETTEEE
T ss_pred CCc---cceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccc---------cceeeccCCccccce-eeeeccccc
Confidence 111 1346778887777665432211 1111111111 011222222222222 233456788
Q ss_pred EEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCC
Q psy4818 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL 394 (734)
Q Consensus 319 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~ 394 (734)
+..+..+ ..+||++|++++. .+.|+...... ...+ ..++++|++.. + .+||++|+++|+. ++|+.
T Consensus 206 ~~~~~~~-~~~l~~~d~~g~~---~~~lt~~~~~~-~~~~-SpDG~~I~f~~--~--~~l~~~d~~~g~~-~~i~~ 270 (281)
T d1k32a2 206 FITDIDG-FGQIYSTDLDGKD---LRKHTSFTDYY-PRHL-NTDGRRILFSK--G--GSIYIFNPDTEKI-EKIEI 270 (281)
T ss_dssp EEECTTS-SCEEEEEETTSCS---CEECCCCCSSC-EEEE-EESSSCEEEEE--T--TEEEEECTTTCCE-EECCC
T ss_pred eeccccc-ccceEEEeCCCCc---eEEeecCCCcc-cccC-cCCCCEEEEEe--C--CEEEEEECCCCCE-EEecc
Confidence 8777654 5579999999876 46666554322 3333 45667887754 3 3699999977765 66653
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.5e-14 Score=144.19 Aligned_cols=253 Identities=13% Similarity=0.064 Sum_probs=152.5
Q ss_pred eEEEEEEEcC-CCcEEeEEEEEecccc-----CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccC--
Q psy4818 458 QTKQVYFRSK-DGTRVPMYIIHRVGAL-----RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGG-- 529 (734)
Q Consensus 458 ~~~~~~~~s~-dg~~i~~~~~~p~~~~-----~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-- 529 (734)
...++++.|. -|.+++..+|+|+++. +++++|+|+++||..+....+........++.+.|.+|+.++.-..
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~ 92 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECCSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCCCccccc
Confidence 5677888886 5789999999999873 3567999999999765433221111234566777999999874210
Q ss_pred -----------CCCCchhhhcccc--ccCCCchhHHHH--HHHHHHHcCC-------CCCCcEEEEEcChHHHHHHHHHh
Q psy4818 530 -----------GELGEDWHNAGRL--LKKQNCFDDFQA--AAEYMINKKY-------TKPKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 530 -----------~~~g~~~~~~~~~--~~~~~~~~D~~~--~~~~l~~~~~-------~d~~ri~i~G~S~GG~~~~~~~~ 587 (734)
.+.+..|+..... ..+...++|++. .+.++.++-- .++++.+|+|+||||+.|+.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al 172 (299)
T d1pv1a_ 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHH
T ss_pred ccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHH
Confidence 0112223322110 012234555442 3444443322 23468999999999999999886
Q ss_pred c--CCCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCC
Q psy4818 588 Q--RPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRV 665 (734)
Q Consensus 588 ~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v 665 (734)
+ +|++|.++++.+|+.+........ ..+...+|... ....+++|+..++... ....|++++.+|.+|...
T Consensus 173 ~~~~p~~f~~~~s~s~~~~~~~~~~~~--~~~~~~~g~~~-----~~~~~~~~~~l~~~~~-~~~~~~i~~~~G~~D~~~ 244 (299)
T d1pv1a_ 173 KGYSGKRYKSCSAFAPIVNPSNVPWGQ--KAFKGYLGEEK-----AQWEAYDPCLLIKNIR-HVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCSTTSHHHH--HHHHHHSCC---------CGGGCHHHHGGGSC-CCTTCCEEEECCTTCTTT
T ss_pred HhcCCCceEEEeeccCcCCcccccchh--hhhhhhcccch-----hhhhhcCHHHHHHHhh-ccCCcceeEecCCCCcch
Confidence 5 589999999999987654321100 00111223221 1123344433222110 144566999999999876
Q ss_pred CCh-HHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHHcCC
Q psy4818 666 PPL-HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727 (734)
Q Consensus 666 ~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 727 (734)
... ....|.++++++. ...++++...+|.+|... . +.....+.+.|+.++||+
T Consensus 245 ~~~~~~~~f~~~~~~~g-----~~~~~~~~~~~G~~Hsw~---y-W~~~i~~~l~f~a~~lgl 298 (299)
T d1pv1a_ 245 EEHLKPELLLEAVKATS-----WQDYVEIKKVHGFDHSYY---F-VSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTTCCTHHHHHHHTTST-----TTTSEEEECCTTCCSSHH---H-HHHHHHHHHHHHHHHTTC
T ss_pred hhhhcHHHHHHHHHhcC-----CCcceEEEecCCCCcCHH---H-HHHHHHHHHHHHHHhcCC
Confidence 554 3567888887761 134578888888889752 1 234455678999999986
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.55 E-value=1.9e-15 Score=150.65 Aligned_cols=220 Identities=12% Similarity=-0.007 Sum_probs=132.1
Q ss_pred eEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCc-cccHHH-------HHHHHhcCeEEEEEecccC
Q psy4818 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP-TFSISR-------CMFLRHFNGIYAIPNIRGG 529 (734)
Q Consensus 458 ~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~-------~~~l~~~G~~v~~~~~rG~ 529 (734)
+.+.+++++.+|+ .++.||+|+++++++++|+|+++||+.+..... .+.... ........++|+.++.+++
T Consensus 26 ~v~~~~~~~~~~~-r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 104 (273)
T d1wb4a1 26 RIVKETYTGINGT-KSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGG 104 (273)
T ss_dssp EEEEEEEEETTEE-EEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCST
T ss_pred eEEEEEEecCCCe-EEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCCC
Confidence 7889999998885 599999999998888999999999987654322 111111 1111223689999999887
Q ss_pred CCCCchhhhccccccCCC-chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccc
Q psy4818 530 GELGEDWHNAGRLLKKQN-CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608 (734)
Q Consensus 530 ~~~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~ 608 (734)
...+..+........... ...++...++.+..+..+|++|++|+|+|+||++++.++.++|++|+++++.+|...+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~~~ 184 (273)
T d1wb4a1 105 NCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNS 184 (273)
T ss_dssp TCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBSSS
T ss_pred CCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccCCC
Confidence 766665544322111000 0011111122222333479999999999999999999999999999999999997643321
Q ss_pred cccccCcccccccCCCCCHHHHHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC---CCC
Q psy4818 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG---SLP 685 (734)
Q Consensus 609 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~---~~~ 685 (734)
.... . ......... + .... ....+++.+|..|. .......+...+.+... ...
T Consensus 185 ~~~~--------~-----~~~~~~~~~--~--~~~~-----~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (273)
T d1wb4a1 185 PQDK--------A-----NSIAEAINR--S--GLSK-----REYFVFAATGSEDI--AYANMNPQIEAMKALPHFDYTSD 240 (273)
T ss_dssp HHHH--------H-----HHHHHHHHH--H--TCCT-----TSCEEEEEEETTCT--THHHHHHHHHHHHTSTTCCBBSC
T ss_pred cccc--------c-----ccchhhhhh--h--hhcc-----cceEEEEecCCCCc--ccccchhHHHHHHHHHHHHHHHH
Confidence 1000 0 000001110 0 1111 11126666776664 44555555555544311 112
Q ss_pred CCCCcEEEEEeCCCCCC
Q psy4818 686 YQKNPLLLRVEQDAGHG 702 (734)
Q Consensus 686 ~~~~~~~~~~~~~~gH~ 702 (734)
..+..+.+.+++++||.
T Consensus 241 ~~~~~~~~~~~~~ggH~ 257 (273)
T d1wb4a1 241 FSKGNFYFLVAPGATHW 257 (273)
T ss_dssp TTTCCEEEEEETTCCSS
T ss_pred hcCCCEEEEEECCCccC
Confidence 33667888899999995
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.54 E-value=2.3e-13 Score=134.97 Aligned_cols=208 Identities=14% Similarity=0.057 Sum_probs=118.8
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
|..|.||++||.++.... |... ...|.++||.|+++|+||.|... ......+++++...+..++++ .
T Consensus 21 G~G~~ivllHG~~~~~~~--~~~~-~~~l~~~g~~vi~~D~~G~G~S~--------~~~~~~~~~~~~~dl~~~l~~--l 87 (277)
T d1brta_ 21 GTGQPVVLIHGFPLSGHS--WERQ-SAALLDAGYRVITYDRRGFGQSS--------QPTTGYDYDTFAADLNTVLET--L 87 (277)
T ss_dssp CSSSEEEEECCTTCCGGG--GHHH-HHHHHHTTCEEEEECCTTSTTSC--------CCSSCCSHHHHHHHHHHHHHH--H
T ss_pred ccCCeEEEECCCCCCHHH--HHHH-HHHHHhCCCEEEEEeCCCCCccc--------ccccccchhhhhhhhhhhhhc--c
Confidence 345778999998765543 4443 34455579999999999955432 112234566666655555554 2
Q ss_pred CCCcEEEEEcChHH-HHHHHHHhcCCCceeEEEEcCCcchhccccc-cccCcc------------------c----cccc
Q psy4818 566 KPKYITIMGGSNGG-LLVGACLNQRPELYGAALILVGALDMLRFNK-FTIAYY------------------S----ESEF 621 (734)
Q Consensus 566 d~~ri~i~G~S~GG-~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-~~~~~~------------------~----~~~~ 621 (734)
..+++.++|||+|| .++..++.++|++++++|+..++........ ...... + ...+
T Consensus 88 ~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T d1brta_ 88 DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDF 167 (277)
T ss_dssp TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhccccc
Confidence 34579999999996 5555567778999999998776432211100 000000 0 0000
Q ss_pred -------CCCCCHHHHH-------------HHHhCC-----ccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHH
Q psy4818 622 -------GSPNNKTHFH-------------NLLSYS-----PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIAT 676 (734)
Q Consensus 622 -------g~~~~~~~~~-------------~~~~~s-----p~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~ 676 (734)
......+... .+.... ....+. .++.| +|+++|++|..+++....++.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~P-~lii~g~~D~~~~~~~~~~~~~~ 242 (277)
T d1brta_ 168 YNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIP----RIDVP-ALILHGTGDRTLPIENTARVFHK 242 (277)
T ss_dssp TTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGG----GCCSC-EEEEEETTCSSSCGGGTHHHHHH
T ss_pred cccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHH----hcCcc-ceeEeecCCCCcCHHHHHHHHHH
Confidence 0000000000 000000 001112 25677 99999999999998775554433
Q ss_pred HHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 677 L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
+ ...+++++++++||...... ..+..+.+.+||.+
T Consensus 243 ~----------~~~~~~~~i~~~gH~~~~e~--p~~~~~~i~~fL~k 277 (277)
T d1brta_ 243 A----------LPSAEYVEVEGAPHGLLWTH--AEEVNTALLAFLAK 277 (277)
T ss_dssp H----------CTTSEEEEETTCCTTHHHHT--HHHHHHHHHHHHHC
T ss_pred h----------CCCCEEEEECCCCCchHHhC--HHHHHHHHHHHHCc
Confidence 2 22347889999999764322 23556678888863
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.53 E-value=1.1e-13 Score=138.66 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=83.2
Q ss_pred EEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc
Q psy4818 462 VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 462 ~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
..++. +|.+|+.... |..|+||++||.+++.. .|.. ....|++ ||.|+++|+||.|... ....
T Consensus 11 ~~~~~-~~~~l~y~~~--------G~gp~vv~lHG~~~~~~--~~~~-~~~~l~~-~~~vi~~D~~G~G~s~---~~~~- 73 (293)
T d1ehya_ 11 YEVQL-PDVKIHYVRE--------GAGPTLLLLHGWPGFWW--EWSK-VIGPLAE-HYDVIVPDLRGFGDSE---KPDL- 73 (293)
T ss_dssp EEEEC-SSCEEEEEEE--------ECSSEEEEECCSSCCGG--GGHH-HHHHHHT-TSEEEEECCTTSTTSC---CCCT-
T ss_pred eEEEE-CCEEEEEEEE--------CCCCeEEEECCCCCCHH--HHHH-HHHHHhc-CCEEEEecCCcccCCc---cccc-
Confidence 34443 5677764331 23578999999766543 3443 4566765 9999999999955322 1110
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
.......++++...+..++++ ...+++.|+|||+||.+++.++.++|+++.++|+..|..
T Consensus 74 ~~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 74 NDLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp TCGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred cccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccC
Confidence 112233456666666666554 344679999999999999999999999999999887753
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.53 E-value=5.1e-14 Score=137.33 Aligned_cols=207 Identities=10% Similarity=0.031 Sum_probs=124.0
Q ss_pred cEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCC
Q psy4818 489 PVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPK 568 (734)
Q Consensus 489 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 568 (734)
|.||++||.++.... |.. +...|+++||.|+++|+||.|.... . ......+++....+..++..... ..
T Consensus 3 ~~vvllHG~~~~~~~--w~~-~~~~L~~~g~~vi~~Dl~G~G~S~~---~----~~~~~~~~~~~~~~~~~~~~~~~-~~ 71 (258)
T d1xkla_ 3 KHFVLVHGACHGGWS--WYK-LKPLLEAAGHKVTALDLAASGTDLR---K----IEELRTLYDYTLPLMELMESLSA-DE 71 (258)
T ss_dssp CEEEEECCTTCCGGG--GTT-HHHHHHHTTCEEEECCCTTSTTCCC---C----GGGCCSHHHHHHHHHHHHHTSCS-SS
T ss_pred CcEEEECCCCCCHHH--HHH-HHHHHHhCCCEEEEecCCCCCCCCC---C----CCCCcchHHHHHHHhhhhhcccc-cc
Confidence 568889998665543 443 4467777899999999999654321 1 11223455655555554444332 34
Q ss_pred cEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhcccc------------ccc--cCccc---------cc------
Q psy4818 569 YITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN------------KFT--IAYYS---------ES------ 619 (734)
Q Consensus 569 ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~------------~~~--~~~~~---------~~------ 619 (734)
++.++|||+||.+++.++.++|+.++.+|...+..-..... ... ..... ..
T Consensus 72 ~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T d1xkla_ 72 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 151 (258)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred cccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccH
Confidence 78999999999999999999999999998877643211000 000 00000 00
Q ss_pred c-----cCCCCCHHHHH--------------HHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q psy4818 620 E-----FGSPNNKTHFH--------------NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680 (734)
Q Consensus 620 ~-----~g~~~~~~~~~--------------~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~ 680 (734)
+ .......+... .+........... +..| +|+++|++|..+|+..+..+.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~- 225 (258)
T d1xkla_ 152 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERF----GSVK-RVYIVCTEDKGIPEEFQRWQIDNIGV- 225 (258)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTG----GGSC-EEEEEETTCTTTTHHHHHHHHHHHCC-
T ss_pred HHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccc----cccc-eeEeeecCCCCCCHHHHHHHHHHCCC-
Confidence 0 00000111111 1111111222222 5667 99999999999998888777766543
Q ss_pred hCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
+++++++++||...-... .+..+.+.+|+.++
T Consensus 226 ----------~~~~~i~~~gH~~~~e~P--~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 226 ----------TEAIEIKGADHMAMLCEP--QKLCASLLEIAHKY 257 (258)
T ss_dssp ----------SEEEEETTCCSCHHHHSH--HHHHHHHHHHHHHC
T ss_pred ----------CEEEEECCCCCchHHhCH--HHHHHHHHHHHHhc
Confidence 378889999997543222 35566678887764
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.53 E-value=2.1e-14 Score=143.83 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=82.4
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
.||.+|+....-++ ..|+||++||.++.... |... ...|++ ||.|+++|.||.|... . ....
T Consensus 14 ~~g~~i~y~~~G~~------~~p~lvllHG~~~~~~~--~~~~-~~~L~~-~~~vi~~d~~G~G~S~---~-----~~~~ 75 (291)
T d1bn7a_ 14 VLGERMHYVDVGPR------DGTPVLFLHGNPTSSYL--WRNI-IPHVAP-SHRCIAPDLIGMGKSD---K-----PDLD 75 (291)
T ss_dssp ETTEEEEEEEESCS------SSSCEEEECCTTCCGGG--GTTT-HHHHTT-TSCEEEECCTTSTTSC---C-----CSCC
T ss_pred ECCEEEEEEEeCCC------CCCeEEEECCCCCCHHH--HHHH-HHHHhc-CCEEEEEeCCCCcccc---c-----cccc
Confidence 37888876654332 34678899998766543 4332 356664 9999999999955432 1 1223
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
...+++...+..++++ ++.+++.++|||+||.+++.++.++|+.++++|+..+
T Consensus 76 ~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~ 128 (291)
T d1bn7a_ 76 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 128 (291)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred cchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeecc
Confidence 4567777777776665 3446899999999999999999999999999887544
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.51 E-value=1e-13 Score=140.52 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=86.2
Q ss_pred cCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccC
Q psy4818 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKK 545 (734)
Q Consensus 466 s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~ 545 (734)
+.||.+++..-.-+ ....|+||++||.++.... |.... ..|.++||.|+++|.||.|... .. ....
T Consensus 30 ~~~g~~~~y~~~G~-----~~~~p~llllHG~~~~~~~--~~~~~-~~l~~~~~~vi~~Dl~G~G~S~---~~---~~~~ 95 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGN-----SDAEDVFLCLHGEPTWSYL--YRKMI-PVFAESGARVIAPDFFGFGKSD---KP---VDEE 95 (310)
T ss_dssp TCTTCEEEEEEEEC-----TTCSCEEEECCCTTCCGGG--GTTTH-HHHHHTTCEEEEECCTTSTTSC---EE---SCGG
T ss_pred CCCCEEEEEEEecC-----CCCCCEEEEECCCCCchHH--HHHHH-HHhhccCceEEEeeecCccccc---cc---cccc
Confidence 34888887543332 2356899999998766544 33333 4455579999999999955432 11 1122
Q ss_pred CCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 546 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
...++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 96 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~ 150 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150 (310)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred cccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCc
Confidence 34677777777777765 33457999999999999999999999999999987654
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.48 E-value=1.7e-13 Score=136.13 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
|..|.||++||.++... .|......++ ++||.|+++|.||.|.... .....+++++...+..+++. .
T Consensus 21 G~g~~illlHG~~~~~~--~~~~~~~~l~-~~~~~vi~~D~~G~G~S~~--------~~~~~~~~~~~~di~~~i~~--l 87 (279)
T d1hkha_ 21 GSGQPVVLIHGYPLDGH--SWERQTRELL-AQGYRVITYDRRGFGGSSK--------VNTGYDYDTFAADLHTVLET--L 87 (279)
T ss_dssp SSSEEEEEECCTTCCGG--GGHHHHHHHH-HTTEEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHH--H
T ss_pred ccCCeEEEECCCCCCHH--HHHHHHHHHH-HCCCEEEEEechhhCCccc--------cccccchhhhhhhhhhhhhh--c
Confidence 34577899999766554 3444443444 4699999999999654321 12234566766665555554 3
Q ss_pred CCCcEEEEEcChHH-HHHHHHHhcCCCceeEEEEcCCc
Q psy4818 566 KPKYITIMGGSNGG-LLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 566 d~~ri~i~G~S~GG-~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
+.+++.++|||+|| .++..++.++|++++++|+.++.
T Consensus 88 ~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~ 125 (279)
T d1hkha_ 88 DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASL 125 (279)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CcCccccccccccccchhhhhccccccccceeEEeecc
Confidence 44689999999996 55555677789999999887654
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.48 E-value=9.1e-14 Score=135.69 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=72.2
Q ss_pred EEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCCCcE
Q psy4818 491 IIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYI 570 (734)
Q Consensus 491 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 570 (734)
.|++||..+++. .|.. +...|+++||.|+++|+||.|.... . ......++++.+.+..++.+. ...+++
T Consensus 5 ~vliHG~~~~~~--~w~~-~~~~L~~~g~~Via~Dl~G~G~S~~---~----~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 73 (256)
T d3c70a1 5 FVLIHTICHGAW--IWHK-LKPLLEALGHKVTALDLAASGVDPR---Q----IEEIGSFDEYSEPLLTFLEAL-PPGEKV 73 (256)
T ss_dssp EEEECCTTCCGG--GGTT-HHHHHHHTTCEEEEECCTTSTTCSC---C----GGGCCSHHHHTHHHHHHHHHS-CTTCCE
T ss_pred EEEeCCCCCCHH--HHHH-HHHHHHhCCCEEEEEcCCCCCCCCC---C----CCCCCCHHHHHHHhhhhhhhh-ccccce
Confidence 477999866554 3443 4567777899999999999654321 1 112345667766665554432 234579
Q ss_pred EEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 571 TIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 571 ~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
.++|||+||++++.++.++|++++++|...+.
T Consensus 74 ~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 105 (256)
T d3c70a1 74 ILVGESCGGLNIAIAADKYCEKIAAAVFHNSV 105 (256)
T ss_dssp EEEEETTHHHHHHHHHHHHGGGEEEEEEESCC
T ss_pred eecccchHHHHHHHHhhcCchhhhhhheeccc
Confidence 99999999999999999999999999887654
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.47 E-value=9.5e-13 Score=132.32 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=87.3
Q ss_pred EEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhc
Q psy4818 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNA 539 (734)
Q Consensus 460 ~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~ 539 (734)
+.-++++.||.+|.....-++ ..|.||++||++++...+... ...|+ +||.|+++|.||.|... ..
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~------~g~pvvllHG~~~~~~~w~~~---~~~l~-~~~~vi~~D~rG~G~S~---~~- 77 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNP------NGKPAVFIHGGPGGGISPHHR---QLFDP-ERYKVLLFDQRGCGRSR---PH- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECT------TSEEEEEECCTTTCCCCGGGG---GGSCT-TTEEEEEECCTTSTTCB---ST-
T ss_pred cCCEEEeCCCcEEEEEEecCC------CCCeEEEECCCCCcccchHHH---HHHhh-cCCEEEEEeCCCccccc---cc-
Confidence 445566789999987665432 235678889988776654332 24455 59999999999955332 11
Q ss_pred cccccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcc
Q psy4818 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603 (734)
Q Consensus 540 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~ 603 (734)
.........++...+..+.++ ....++.++|+|+||.++..++...|+.++.+++..+..
T Consensus 78 --~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~ 137 (313)
T d1wm1a_ 78 --ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 137 (313)
T ss_dssp --TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --ccccccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccc
Confidence 122334455666555555554 345689999999999999999999999999888776543
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=4.4e-14 Score=138.85 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=115.2
Q ss_pred CCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCC
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTK 566 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 566 (734)
..|.||++||...... .|.. .+..|++ ||.|+++|.||.|... ......+.|+. +.+....
T Consensus 10 g~~~lvllHG~~~~~~--~~~~-~~~~L~~-~~~vi~~D~~G~G~S~---------~~~~~~~~d~~---~~~~~~~--- 70 (256)
T d1m33a_ 10 GNVHLVLLHGWGLNAE--VWRC-IDEELSS-HFTLHLVDLPGFGRSR---------GFGALSLADMA---EAVLQQA--- 70 (256)
T ss_dssp CSSEEEEECCTTCCGG--GGGG-THHHHHT-TSEEEEECCTTSTTCC---------SCCCCCHHHHH---HHHHTTS---
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHhC-CCEEEEEeCCCCCCcc---------ccccccccccc---ccccccc---
Confidence 3467788999765543 3443 3466764 9999999999965321 12223444544 3333322
Q ss_pred CCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCcchhccccccc-cC---------------cccccc------cCCC
Q psy4818 567 PKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT-IA---------------YYSESE------FGSP 624 (734)
Q Consensus 567 ~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-~~---------------~~~~~~------~g~~ 624 (734)
.+++.++|||+||.+++.++.++|+.++++++..+........... .. ..+... ++..
T Consensus 71 ~~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
T d1m33a_ 71 PDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTE 150 (256)
T ss_dssp CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTST
T ss_pred ccceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhcccc
Confidence 3578999999999999999999999999888765432111100000 00 000000 0110
Q ss_pred CC------------------HHH----HHHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q psy4818 625 NN------------------KTH----FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIG 682 (734)
Q Consensus 625 ~~------------------~~~----~~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~ 682 (734)
.. .+. ...+...+....++. +++| +|+++|++|..+|++.+..+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~P-~lii~G~~D~~~p~~~~~~l~~~~~---- 221 (256)
T d1m33a_ 151 TARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQN----VSMP-FLRLYGYLDGLVPRKVVPMLDKLWP---- 221 (256)
T ss_dssp THHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGG----CCSC-EEEEEETTCSSSCGGGCC-CTTTCT----
T ss_pred chhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHh----ccCC-ccccccccCCCCCHHHHHHHHHHCC----
Confidence 00 000 112222222223333 6777 9999999999999887665554332
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHHH
Q psy4818 683 SLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMK 723 (734)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 723 (734)
..++.+++++||...-... .+..+.+.+||.+
T Consensus 222 -------~~~~~~i~~~gH~~~~e~p--~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 222 -------HSESYIFAKAAHAPFISHP--AEFCHLLVALKQR 253 (256)
T ss_dssp -------TCEEEEETTCCSCHHHHSH--HHHHHHHHHHHTT
T ss_pred -------CCEEEEECCCCCchHHHCH--HHHHHHHHHHHHH
Confidence 3478889999997543222 3455556777653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.44 E-value=1.4e-10 Score=115.71 Aligned_cols=239 Identities=11% Similarity=0.091 Sum_probs=148.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..+++|||||++|+.+...+ ..|++||+++++.+...........+.|++|++.++.....
T Consensus 34 p~~va~spdG~~l~v~~~~~----~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 94 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHS----NDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA--------------- 94 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT---------------
T ss_pred ceEEEEeCCCCEEEEEECCC----CEEEEEECCCCceeeeeeccccccccccccccccccccccc---------------
Confidence 45789999999997665433 36999999999865433333334678999999988876532
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
...+.+++..+... ....... .......++|||+++++.... ...+++++..++ .....+...
T Consensus 95 ~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~dg~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~ 157 (301)
T d1l0qa2 95 SSTLSVIDTTSNTV--AGTVKTG---KSPLGLALSPDGKKLYVTNNG---DKTVSVINTVTK---------AVINTVSVG 157 (301)
T ss_dssp TTEEEEEETTTTEE--EEEEECS---SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTT---------EEEEEEECC
T ss_pred cceeeeccccccee--eeecccc---ccceEEEeecCCCeeeeeecc---ccceeeeecccc---------ceeeecccC
Confidence 23577777765431 1222222 134568899999999876533 256888888772 112222222
Q ss_pred cceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEE
Q psy4818 304 DHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382 (734)
Q Consensus 304 ~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~d 382 (734)
..... .++++++.+++.... ...+..++..... ........ ..........+++.+++.........|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 158 RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNS---VIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE---EEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred CCceEEEeeccccceeeeccc---cccccccccccee---eeeccccc-CCcceeeccccccccccccccceeeeeeeee
Confidence 22222 388998888776543 2345566655433 23333322 2222223334445666665555556899999
Q ss_pred CCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 383 LNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 383 l~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.+++.+..+... ..+.++.++||++.++++.+.. ..+.++|+
T Consensus 231 ~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~---~~i~v~D~ 273 (301)
T d1l0qa2 231 TGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC---NTVSVIDT 273 (301)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT---TEEEEEET
T ss_pred cCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCC---CeEEEEEC
Confidence 9989877777543 3356788899998887765433 37999999
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.38 E-value=3.6e-14 Score=144.32 Aligned_cols=228 Identities=12% Similarity=-0.019 Sum_probs=123.5
Q ss_pred EeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH----HHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 472 VPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI----SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 472 i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~----~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
+.+..+.|.+ .++.| ||++||++.+...+...+ .++++++++||.|+++|+||+|..+..............
T Consensus 46 ~~v~~~~p~~---~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~~~~~ 121 (318)
T d1qlwa_ 46 MYVRYQIPQR---AKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGKA 121 (318)
T ss_dssp EEEEEEEETT---CCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTTSS
T ss_pred EEEEEECCCC---CCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHHHHHH
Confidence 4555566764 34566 566899987765543322 255667778999999999998887754333221111111
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCc-eeEEEEcCCcchhcccccc-------------cc
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL-YGAALILVGALDMLRFNKF-------------TI 613 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~-~~a~v~~~~~~d~~~~~~~-------------~~ 613 (734)
..+ +++.-.....++++.|+|+||.++..++...+.. ...+++..++.+....... ..
T Consensus 122 ~~~--------~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (318)
T d1qlwa_ 122 PAS--------SLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL 193 (318)
T ss_dssp CGG--------GSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH
T ss_pred HHH--------HHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHhhh
Confidence 111 1111122345677789999998877776544321 1111111111111100000 00
Q ss_pred CcccccccCCCCCHHHHHHH------H---------hCCccCCCCCCCCCccCCcEEEEecCCCCCCCChH-----HHHH
Q psy4818 614 AYYSESEFGSPNNKTHFHNL------L---------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH-----SYKF 673 (734)
Q Consensus 614 ~~~~~~~~g~~~~~~~~~~~------~---------~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~-----~~~~ 673 (734)
.......+............ + ..++...... ++.| +|+++|++|.++|.+. +..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~P-~Lii~G~~D~~~p~~~~~~~~~~~~ 268 (318)
T d1qlwa_ 194 DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPL----TSIP-VLVVFGDHIEEFPRWAPRLKACHAF 268 (318)
T ss_dssp TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGG----TTSC-EEEEECSSCTTCTTTHHHHHHHHHH
T ss_pred ccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhh----ccCC-EEEEecCcCcccChhhhHHHHHHHH
Confidence 00000000000000000000 0 0122233332 5667 9999999999999654 5567
Q ss_pred HHHHHhhhCCCCCCCCcEEEEEeC-----CCCCCCCCchHHhHHHHHHHHHHHHHH
Q psy4818 674 IATLQEKIGSLPYQKNPLLLRVEQ-----DAGHGQGTPLMKSIEEMTDIYVFLMKS 724 (734)
Q Consensus 674 ~~~L~~~~~~~~~~~~~~~~~~~~-----~~gH~~~~~~~~~~~~~~~~~~fl~~~ 724 (734)
++.|+++ |.++++..+| |+||......+. .+..+.+.+||.++
T Consensus 269 ~~~l~~~-------g~~~~~~~lp~~gi~G~gH~~~~e~~~-~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 269 IDALNAA-------GGKGQLMSLPALGVHGNSHMMMQDRNN-LQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHT-------TCCEEEEEGGGGTCCCCCTTGGGSTTH-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-------CCCcEEEEecccccCCCcCccccCcCH-HHHHHHHHHHHHhc
Confidence 8888888 8899999977 466987544442 57778899999986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.37 E-value=9.3e-12 Score=127.95 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=118.2
Q ss_pred eEEeCC-CCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 146 LYAFSD-NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 146 ~~~~SP-DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
...||| ||+++||... | +|+++|+++|+.++.. .......++|||||+.|+++..+. .
T Consensus 7 ~~~fSP~dG~~~a~~~~--g----~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~--------------g 65 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR--G----QAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTRE--------------G 65 (360)
T ss_dssp EEEEEECGGGCEEEEET--T----EEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETT--------------E
T ss_pred cccccCCCCCEEEEEEC--C----eEEEEECCCCcEEEcc-CCCCEEEEEECCCCCEEEEEEcCC--------------C
Confidence 367999 9999999863 2 6999999999876543 333457899999999999988643 2
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc-
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM- 303 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~- 303 (734)
..|+++++.++... .+ ..+......++|||||++|++.... ..+++|++.++. ...+....
T Consensus 66 ~~v~v~d~~~~~~~--~~---~~~~~~v~~~~~spdg~~l~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~ 127 (360)
T d1k32a3 66 DFLGIYDYRTGKAE--KF---EENLGNVFAMGVDRNGKFAVVANDR----FEIMTVDLETGK---------PTVIERSRE 127 (360)
T ss_dssp EEEEEEETTTCCEE--EC---CCCCCSEEEEEECTTSSEEEEEETT----SEEEEEETTTCC---------EEEEEECSS
T ss_pred CEEEEEECCCCcEE--Ee---eCCCceEEeeeecccccccceeccc----cccccccccccc---------eeeeeeccc
Confidence 35889998876422 11 2233356679999999999975432 679999998832 22222222
Q ss_pred cceE-EEEEecCCeEEEEeCCC------CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEE
Q psy4818 304 DHHH-EIIANNGPELIVKTTKN------APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHY 370 (734)
Q Consensus 304 ~~~~-~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 370 (734)
.... ..|+|||++|++..... .....++.+++.++. ...++.+. .........++++.|++..
T Consensus 128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~-~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTEN-SHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSS-SBEEEEEECTTSCEEEEEE
T ss_pred ccccchhhccceeeeeeeccccccceeeccccceeeeccccCc---eeeecccc-cccccccccCCCCEEEEEe
Confidence 2222 24999999998876432 234568889988765 23344333 3333333344545555544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.36 E-value=3.6e-11 Score=129.20 Aligned_cols=275 Identities=11% Similarity=-0.000 Sum_probs=151.6
Q ss_pred cEEeCCeEEEEEEcCC----CCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEE
Q psy4818 96 PQRQENNYFYFHNKGL----QNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 171 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~ 171 (734)
.+|||.+++|.++... .....+|+.+..++....+...+ ..+..++|||||++|||+.+ .+||
T Consensus 69 ~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~-------~~~~~~~~SPDG~~ia~~~~------~~l~ 135 (470)
T d2bgra1 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP-------NNTQWVTWSPVGHKLAYVWN------NDIY 135 (470)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-------TTEEEEEECSSTTCEEEEET------TEEE
T ss_pred ECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCC-------ccccccccccCcceeeEeec------ccce
Confidence 4589999999876321 12345677666555433322211 22678999999999999764 3699
Q ss_pred EEECCCCCccccccccc-------------------ccCeeEEEcCCcEEEEEEEecCCCCC---------CC-Ccc---
Q psy4818 172 IKDVDTGKDYPEVLKNV-------------------KFPSISWTHDHKGFFYNQYCDINGTA---------DG-TET--- 219 (734)
Q Consensus 172 v~dl~~g~~~~~~~~~~-------------------~~~~~~wSpDg~~l~y~~~~~~~~~~---------~~-~~~--- 219 (734)
++++.+|+....+.... ....+.|||||++|+|.+.++..... .. ...
T Consensus 136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (470)
T d2bgra1 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (470)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence 99999987543322110 12457899999999999887543210 00 000
Q ss_pred -------cccCCcEEEEEECCCCCCCCeeEE--ec-----CCCCeeEEEEEEecCCcEEEEEEec---------------
Q psy4818 220 -------TAHMGQKIYYHVLGTEQDKDIPVV--EF-----PNGRSLGLHSEVTDCGRYLLVSTSN--------------- 270 (734)
Q Consensus 220 -------~~~~~~~l~~~~l~t~~~~~~~v~--~~-----~~~~~~~~~~~~SpDG~~l~~~~~~--------------- 270 (734)
..+....++++++.+........- .. .....++..+.|+++++.+++...+
T Consensus 216 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~ 295 (470)
T d2bgra1 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (470)
T ss_dssp EECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred eccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCC
Confidence 001122455555544332111100 00 0112233445555555544433322
Q ss_pred --------------------------------------------CCCCceEEEEeCCCCCCCcccCCCCceeeeccccce
Q psy4818 271 --------------------------------------------NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH 306 (734)
Q Consensus 271 --------------------------------------------~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~ 306 (734)
.....+||+++++++ ....++.+....
T Consensus 296 tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~---------~~~~lt~g~~~v 366 (470)
T d2bgra1 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK---------DCTFITKGTWEV 366 (470)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS---------CCEESCCSSSCE
T ss_pred CCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCC---------ceeeeccCCeeE
Confidence 122234555555442 122333332223
Q ss_pred EEEEEecCCeEEEEeCCCC---CCceEEEEecCCCCCCCceEeecCC---CCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 307 HEIIANNGPELIVKTTKNA---PKGKVVTINLNNPCEKNWKTLIPED---ENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 307 ~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
...+++|++.+||+++... ....||+++++++.. .+.|+... ...+....+.+++++++..++....+.+.+
T Consensus 367 ~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~--~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l 444 (470)
T d2bgra1 367 IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK--VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (470)
T ss_dssp EEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC--EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCc--eeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEE
Confidence 3347889999999987532 234599999987542 23343321 122333444466667777776666677888
Q ss_pred EECCCCceeeeeCC
Q psy4818 381 HDLNTGKRLHSFPL 394 (734)
Q Consensus 381 ~dl~~g~~~~~l~~ 394 (734)
++..+|+.++.|..
T Consensus 445 ~~~~~g~~v~~le~ 458 (470)
T d2bgra1 445 HSSVNDKGLRVLED 458 (470)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEec
Confidence 99889988777753
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.35 E-value=3.5e-10 Score=114.08 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=156.8
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
.|+|+.++|.. + + .+++.+........++. ++...+..++|||||++||-... + ..|++||+.
T Consensus 26 ~~~g~~l~~~~--~--~--~v~i~~~~~~~~~~~~~------~H~~~v~~~~~sp~g~~latg~~-d----g~i~iwd~~ 88 (311)
T d1nr0a1 26 TPAGDKIQYCN--G--T--SVYTVPVGSLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDV-H----GNVRIWDTT 88 (311)
T ss_dssp CTTSSEEEEEE--T--T--EEEEEETTCSSCCEEEC------CCSSCEEEEEECTTSSEEEEEET-T----SEEEEEESS
T ss_pred cCCCCEEEEEe--C--C--EEEEEECCCCceeEEEc------CCCCCEEEEEEeCCCCeEecccc-C----ceEeeeeee
Confidence 36788888753 1 1 24444444443333332 22345889999999999985543 2 479999999
Q ss_pred CCCccc-ccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEE
Q psy4818 177 TGKDYP-EVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGL 253 (734)
Q Consensus 177 ~g~~~~-~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~ 253 (734)
+++... ... ....+..+.|+|||+.|+....+. ...+.++++.+......+ ..+...+.
T Consensus 89 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~--------------~~~~~v~~~~~~~~~~~l----~~h~~~v~ 150 (311)
T d1nr0a1 89 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR--------------ERFGHVFLFDTGTSNGNL----TGQARAMN 150 (311)
T ss_dssp STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS--------------SCSEEEEETTTCCBCBCC----CCCSSCEE
T ss_pred ccccccccccccccCccccccccccccccccccccc--------------cccccccccccccccccc----cccccccc
Confidence 876432 111 122346789999999888776422 223556677665432221 12233567
Q ss_pred EEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEE
Q psy4818 254 HSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVT 332 (734)
Q Consensus 254 ~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~ 332 (734)
.+.|+|||++++++... ...|.+||+.++. ............... |+|+++.|+..+.. ..+.+
T Consensus 151 ~v~~~~~~~~~l~sgs~---d~~i~i~d~~~~~--------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d----~~v~~ 215 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSD---DNTVAIFEGPPFK--------FKSTFGEHTKFVHSVRYNPDGSLFASTGGD----GTIVL 215 (311)
T ss_dssp EEEECSSSSCEEEEEET---TSCEEEEETTTBE--------EEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEE
T ss_pred cccccccceeeeccccc---ccccccccccccc--------cccccccccccccccccCcccccccccccc----ccccc
Confidence 78999999987665543 2578999998721 111121222223333 89999877765543 35888
Q ss_pred EecCCCCCCCceEeecCC------CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCC---ceEEeec
Q psy4818 333 INLNNPCEKNWKTLIPED------ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDL---GQITHIS 403 (734)
Q Consensus 333 ~d~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~---g~v~~~~ 403 (734)
+++.++.. ...+... ....+..+.+..++..+++...++ .|++||+.+++.++.+.... ..+.++.
T Consensus 216 ~d~~~~~~---~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg--~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~ 290 (311)
T d1nr0a1 216 YNGVDGTK---TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGII 290 (311)
T ss_dssp EETTTCCE---EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred cccccccc---cccccccccccccccccccccccCCCCCEEEEEeCCC--eEEEEECCCCcEEEEEECCCCccceEEEEE
Confidence 88876541 1112111 112345555554456666666664 69999999998877775431 2232343
Q ss_pred cCcccceEEEEEecCCCCceEEEEeC
Q psy4818 404 GRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 404 ~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ +++.++ +.+.. +.+..+|+
T Consensus 291 ~--~~~~l~-s~s~d---G~i~~wd~ 310 (311)
T d1nr0a1 291 W--TKQALV-SISAN---GFINFVNP 310 (311)
T ss_dssp E--CSSCEE-EEETT---CCEEEEET
T ss_pred e--cCCEEE-EEECC---CEEEEEeC
Confidence 3 333343 33322 35677765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.34 E-value=2.4e-10 Score=115.28 Aligned_cols=237 Identities=9% Similarity=0.011 Sum_probs=148.6
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.+++||||+.|||.. |+ .++++|+++++......+ ...+..++|||||+.|+....+.
T Consensus 22 ~~a~~~~g~~l~~~~---~~---~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg--------------- 80 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG--------------- 80 (311)
T ss_dssp CCEECTTSSEEEEEE---TT---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTS---------------
T ss_pred EEEEcCCCCEEEEEe---CC---EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCc---------------
Confidence 578899999999975 22 489999998875432222 22346889999999887665432
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecccc
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMD 304 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~ 304 (734)
.|.+|++.+........+.. ....+..+.|+|||++|+..... ....+.+++++++. ....+.....
T Consensus 81 -~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~~s~d~~~l~~~~~~--~~~~~~v~~~~~~~--------~~~~l~~h~~ 147 (311)
T d1nr0a1 81 -NVRIWDTTQTTHILKTTIPV--FSGPVKDISWDSESKRIAAVGEG--RERFGHVFLFDTGT--------SNGNLTGQAR 147 (311)
T ss_dssp -EEEEEESSSTTCCEEEEEEC--SSSCEEEEEECTTSCEEEEEECC--SSCSEEEEETTTCC--------BCBCCCCCSS
T ss_pred -eEeeeeeecccccccccccc--ccCcccccccccccccccccccc--cccccccccccccc--------cccccccccc
Confidence 68899988765332222332 23346689999999998865432 22456777877632 1122222223
Q ss_pred ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEEC
Q psy4818 305 HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 305 ~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl 383 (734)
..... |+|+++.+++.+.. ++.|..+|+.+.. ........ ...+..+.+..++.++++...+ ..+.+||+
T Consensus 148 ~v~~v~~~~~~~~~l~sgs~---d~~i~i~d~~~~~---~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d--~~v~~~d~ 218 (311)
T d1nr0a1 148 AMNSVDFKPSRPFRIISGSD---DNTVAIFEGPPFK---FKSTFGEH-TKFVHSVRYNPDGSLFASTGGD--GTIVLYNG 218 (311)
T ss_dssp CEEEEEECSSSSCEEEEEET---TSCEEEEETTTBE---EEEEECCC-SSCEEEEEECTTSSEEEEEETT--SCEEEEET
T ss_pred ccccccccccceeeeccccc---ccccccccccccc---cccccccc-cccccccccCcccccccccccc--cccccccc
Confidence 33333 89998876554443 3458889988754 23333332 3445556565545666666555 46889999
Q ss_pred CCCceeeeeCC-------CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 384 NTGKRLHSFPL-------DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 384 ~~g~~~~~l~~-------~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+++....+.. ..+.|..+.++++++.++ +.+.. ..+++||+
T Consensus 219 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~-tgs~D---g~v~iwd~ 267 (311)
T d1nr0a1 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASAD---KTIKIWNV 267 (311)
T ss_dssp TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEETT---SEEEEEET
T ss_pred ccccccccccccccccccccccccccccCCCCCEEE-EEeCC---CeEEEEEC
Confidence 88776554432 135677888899887555 33332 36999999
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.33 E-value=6.4e-13 Score=132.47 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=84.4
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc-CCcchhccccccccCcccccccCCCC--CHHHHHHHHhCCccC
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL-VGALDMLRFNKFTIAYYSESEFGSPN--NKTHFHNLLSYSPLH 640 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~-~~~~d~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~sp~~ 640 (734)
-+||+||+|+|+|+||+|++.++..+|++|+++++. ++.. +.......... ...-+.+. .+.........+.+.
T Consensus 7 ~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p-~~ca~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (318)
T d2d81a1 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGP-YDCARNQYYTS--CMYNGYPSITTPTANMKSWSGNQIA 83 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCC-TTTTSSSCGGG--GSTTCCCCCHHHHHHHHHHBTTTBC
T ss_pred CCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCc-hhhhcccchHH--HhhcCCCCCcChhHHHHHHhhcCCc
Confidence 489999999999999999999999999999754432 2221 11110000000 00011121 122223333344444
Q ss_pred CCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCC
Q psy4818 641 NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704 (734)
Q Consensus 641 ~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~ 704 (734)
.+.. ...||+||+||.+|.+|++.++.+++++|++.. .+.++.++.++++||++.
T Consensus 84 ~~~~----~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~-----~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 84 SVAN----LGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFD-----NSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp CGGG----GGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTS-----CGGGEEEEEETTCCSSEE
T ss_pred chhc----cCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCc-----CCCceEEEEeCCCCCCCC
Confidence 4443 444569999999999999999999999998761 145789999999999884
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.31 E-value=1e-11 Score=120.96 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
+...|+||++||..+... .|.. +...|++.||.|+++|+||.|.... . ......+...+...+.....
T Consensus 13 ~~~~P~ivllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~Dl~G~G~s~~---~------~~~~~~~~~~~~~~~~~~~~ 80 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGSGA--DWQP-VLSHLARTQCAALTLDLPGHGTNPE---R------HCDNFAEAVEMIEQTVQAHV 80 (264)
T ss_dssp BTTBCEEEEECCTTCCGG--GGHH-HHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEeCCCCCCHH--HHHH-HHHHHHhCCCEEEEEeccccccccc---c------cccccchhhhhhhhcccccc
Confidence 456789999999876554 3443 4566776799999999999654321 1 11112222233333333334
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEc
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~ 599 (734)
....++.++|||+||.++..++.++|+....++..
T Consensus 81 ~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~ 115 (264)
T d1r3da_ 81 TSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA 115 (264)
T ss_dssp CTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred cccCceeeeeecchHHHHHHHHHhCchhccccccc
Confidence 45678999999999999999999999876666543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.30 E-value=5.1e-09 Score=107.86 Aligned_cols=297 Identities=11% Similarity=0.012 Sum_probs=155.0
Q ss_pred ccCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC-----CCc
Q psy4818 92 KYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS-----GSD 166 (734)
Q Consensus 92 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~-----g~~ 166 (734)
...+|+|||.++|............+|+.+...++...-++.. . ...+.|||||++|++..... +..
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~------~--~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG------F--LPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC------C--CccEEEcCCCCEEEEEeecCCccccccc
Confidence 4567889999998764333233356888876555533333321 1 12589999999999986543 233
Q ss_pred eEEEEEEECCCCCccccccc--------ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC
Q psy4818 167 WNTLHIKDVDTGKDYPEVLK--------NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~~--------~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~ 238 (734)
...|.+||+.+++.+..... ......+.|+|||+.+++...+. ...+..++..+..
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--------------~~~~~~~~~~~~~-- 159 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA--------------GPAVGLVVQGGSS-- 159 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC--------------CCceEEeeccCCe--
Confidence 46799999999986432211 01124679999999998876532 1234445544332
Q ss_pred CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec--cccceEEEEEecCCe
Q psy4818 239 DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP--GMDHHHEIIANNGPE 316 (734)
Q Consensus 239 ~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~--~~~~~~~~~s~dg~~ 316 (734)
.+ .... ....+.++|||+.+++.... ...+.+++..++...... ..... +.........++++.
T Consensus 160 --~~-~~~~---~~~~~~~s~~g~~~~v~~~~---dg~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T d2madh_ 160 --DD-QLLS---SPTCYHIHPGAPSTFYLLCA---QGGLAKTDHAGGAAGAGL-----VGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred --EE-EEec---cceeEEEecCCCcEEEEEcC---CCeEEEEEcCCceeeEEE-----eeeccccCccceeeeEEECCCc
Confidence 11 1111 12357899999998766543 246788888763211100 00000 000011112222222
Q ss_pred EEEEeCCCCCCceEEEEecCCCCCCCc---------eEeecCCCCceeEEEEEeeCCEEEEEEEe-------CCceeEEE
Q psy4818 317 LIVKTTKNAPKGKVVTINLNNPCEKNW---------KTLIPEDENRTLDVVAAVANNKLIVHYIQ-------NVRSVMDL 380 (734)
Q Consensus 317 l~~~s~~~~~~~~l~~~d~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~l~~ 380 (734)
.++.... ..+++.++..+...... .......+..........++..+++.... .....+.+
T Consensus 226 ~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 226 RIVWPVY---SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred eEEEecC---CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 2221111 22344555443220000 00000000000011111222333332211 12247889
Q ss_pred EECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
+|+.+++.+..+..+ ..+..+.+++|++.+++...+.. ..+++||+ +++
T Consensus 303 ~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~-----~tg 351 (373)
T d2madh_ 303 VTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGT--EVLHIYDA-----GAG 351 (373)
T ss_pred EECCCCcEEEEecCC-CCeeEEEECCCCCEEEEEEeCCC--CeEEEEEC-----CCC
Confidence 999999887777654 33557888999988766544432 57999999 677
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=1.1e-09 Score=112.10 Aligned_cols=292 Identities=16% Similarity=0.137 Sum_probs=162.6
Q ss_pred ccCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC-----CCc
Q psy4818 92 KYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS-----GSD 166 (734)
Q Consensus 92 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~-----g~~ 166 (734)
...+|.|||.++|..-...+.....+|+.+...+...-.++.. . ...++|||||++|+++.... |..
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g------~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~ 76 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG------F--LPNPVVADDGSFIAHASTVFSRIARGER 76 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC------S--SCEEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC------C--CCceEEcCCCCEEEEEeCCCccccccCC
Confidence 3567899999997664444444567888887655432223211 1 12589999999998765421 233
Q ss_pred eEEEEEEECCCCCcccccc--------cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC
Q psy4818 167 WNTLHIKDVDTGKDYPEVL--------KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~--------~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~ 238 (734)
...|++||+++++.+.... .......++|||||+.+++..... ...++.++..+....
T Consensus 77 d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--------------~~~~~~~~~~~~~~~ 142 (355)
T d2bbkh_ 77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP--------------APAVGVVDLEGKAFK 142 (355)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--------------SCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC--------------CceeeeeecCCCcEe
Confidence 4679999999998543211 011224689999999998765321 235666666554311
Q ss_pred CeeEEecCCCCe-----eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEec
Q psy4818 239 DIPVVEFPNGRS-----LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANN 313 (734)
Q Consensus 239 ~~~v~~~~~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~d 313 (734)
.....+.... -...+.+++||+.+++..... ..+...+..+... .....+ ....++.+
T Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~---~~~~~~~~~~~~~-------~~~~~~-----~~~~~~~~ 205 (355)
T d2bbkh_ 143 --RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFHP-------EDEFLI-----NHPAYSQK 205 (355)
T ss_dssp --EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCSC-------TTSCBC-----SCCEEETT
T ss_pred --eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC---CeEEEEecccccc-------eeccee-----eeccccCC
Confidence 1111111000 012367899999988754332 2344455544110 000000 11125566
Q ss_pred CCeEEEEeCCCCCCceEEEEecCCCCCCCceE------------eecCCCCceeEEEEEeeCCEEEEEEEeCC-------
Q psy4818 314 GPELIVKTTKNAPKGKVVTINLNNPCEKNWKT------------LIPEDENRTLDVVAAVANNKLIVHYIQNV------- 374 (734)
Q Consensus 314 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 374 (734)
+..+++.+.. .+++.+++.++....+.. ..+.. .. ......++..+++......
T Consensus 206 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~--~~~~~~d~~~~~~~~~~~~~~~~~~~ 278 (355)
T d2bbkh_ 206 AGRLVWPTYT----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG-WQ--QVAYHRALDRIYLLVDQRDEWRHKTA 278 (355)
T ss_dssp TTEEEEEBTT----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS-SS--CEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred CCeEEEecCC----CeEEEEecCCCcEEEEeccCCcccceEeeeeeccc-eE--EEEEeCCCCeEEEEeccCCceeecCC
Confidence 6666665432 357777776543100000 00111 01 1122234455555554332
Q ss_pred ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
...|.+||+.+++.+..+... ..+.++.++||++.+++..++. ...|++||+ +++
T Consensus 279 ~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~--d~~i~v~D~-----~tg 333 (355)
T d2bbkh_ 279 SRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTG--DKTLYIHDA-----ESG 333 (355)
T ss_dssp EEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETT--TTEEEEEET-----TTC
T ss_pred CCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECC--CCEEEEEEC-----CCC
Confidence 257999999989887777543 3456788899998766655443 358999999 677
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.25 E-value=4e-11 Score=119.23 Aligned_cols=118 Identities=10% Similarity=0.027 Sum_probs=76.4
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
||.+|+.... |..|+||++||.+++... |... ...|++ +|.|+++|.||.|.... ... ......
T Consensus 16 ~g~~i~y~~~--------G~g~~vvllHG~~~~~~~--~~~~-~~~L~~-~~~vi~~Dl~G~G~S~~---~~~-~~~~~~ 79 (298)
T d1mj5a_ 16 KGRRMAYIDE--------GTGDPILFQHGNPTSSYL--WRNI-MPHCAG-LGRLIACDLIGMGDSDK---LDP-SGPERY 79 (298)
T ss_dssp TTEEEEEEEE--------SCSSEEEEECCTTCCGGG--GTTT-GGGGTT-SSEEEEECCTTSTTSCC---CSS-CSTTSS
T ss_pred CCEEEEEEEE--------cCCCcEEEECCCCCCHHH--HHHH-HHHHhc-CCEEEEEeCCCCCCCCC---Ccc-cccccc
Confidence 7888875421 345788999998766543 3332 355664 89999999999554321 110 111122
Q ss_pred chhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
...+..+.+..++.+. ...+++.++|||+||.+++.++.++|+.+++++...+.
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~ 133 (298)
T d1mj5a_ 80 AYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAI 133 (298)
T ss_dssp CHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEEC
T ss_pred ccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeeccccc
Confidence 3344444444333321 23457999999999999999999999999988876543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.6e-09 Score=108.73 Aligned_cols=236 Identities=9% Similarity=0.045 Sum_probs=143.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc--c---cc-ccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE--V---LK-NVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~--~---~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
..+..++|||||++||-.. + ..|.|||++++..... . .. ...+..++|+|||+.|+....+.
T Consensus 52 ~~V~~v~fs~~g~~latg~-----d-g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg------ 119 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-----K-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS------ 119 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-----B-SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS------
T ss_pred CcEEEEEECCCCCEEEEEE-----C-CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc------
Confidence 3467899999999998542 2 2599999987653211 1 11 11235789999999887665432
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.|.+|++...... .......+........|+||+.+++... ....+.++++.++. .
T Consensus 120 ----------~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~----~d~~i~~~~~~~~~--------~ 175 (337)
T d1gxra_ 120 ----------TLSIWDLAAPTPR--IKAELTSSAPACYALAISPDSKVCFSCC----SDGNIAVWDLHNQT--------L 175 (337)
T ss_dssp ----------EEEEEECCCC--E--EEEEEECSSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTE--------E
T ss_pred ----------ccccccccccccc--cccccccccccccccccccccccccccc----cccccccccccccc--------c
Confidence 6888888765432 2222222223456788999999987543 22578999998721 1
Q ss_pred ceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCC
Q psy4818 296 LKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 296 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
.............. |++++..++..+. +..+..+|+.++. ........ ..+..+.+..++..+++...+
T Consensus 176 ~~~~~~~~~~v~~l~~s~~~~~~~~~~~----d~~v~i~d~~~~~---~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d- 245 (337)
T d1gxra_ 176 VRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGR---QLQQHDFT--SQIFSLGYCPTGEWLAVGMES- 245 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTE---EEEEEECS--SCEEEEEECTTSSEEEEEETT-
T ss_pred cccccccccccccccccccccccccccc----cccccccccccce---eecccccc--cceEEEEEcccccccceeccc-
Confidence 11122222223333 8889888776554 3468899987654 12222222 334445554445555555555
Q ss_pred ceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+++||+.+++.. ......+.+..+.++++++.++ +.+.. ..+..||+
T Consensus 246 -~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~-s~s~D---g~i~iwd~ 294 (337)
T d1gxra_ 246 -SNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFV-STGKD---NLLNAWRT 294 (337)
T ss_dssp -SCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEE-EEETT---SEEEEEET
T ss_pred -cccccccccccccc-cccccccccceEEECCCCCEEE-EEeCC---CeEEEEEC
Confidence 47889999777653 3333456677888899887554 33332 46899998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.2e-08 Score=103.71 Aligned_cols=234 Identities=12% Similarity=0.049 Sum_probs=144.2
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc--ccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD--YPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~--~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
..+..++|||||++|+.... . ..|++||+..... ... ...........|+||+..++....+.
T Consensus 98 ~~I~~v~~s~dg~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------- 163 (337)
T d1gxra_ 98 NYIRSCKLLPDGCTLIVGGE-A----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------- 163 (337)
T ss_dssp SBEEEEEECTTSSEEEEEES-S----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred CcEEEEEEcCCCCEEEEeec-c----ccccccccccccccccccccccccccccccccccccccccccccc---------
Confidence 45889999999999986543 2 3699999876542 111 11112235678999998877655322
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.|.++++.+.. +.............+.|+++|+.++.... ...+.+||+.++. ...
T Consensus 164 -------~i~~~~~~~~~----~~~~~~~~~~~v~~l~~s~~~~~~~~~~~----d~~v~i~d~~~~~--------~~~- 219 (337)
T d1gxra_ 164 -------NIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGR--------QLQ- 219 (337)
T ss_dssp -------CEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTE--------EEE-
T ss_pred -------ccccccccccc----ccccccccccccccccccccccccccccc----cccccccccccce--------eec-
Confidence 57888877643 12222222334567899999999886542 2679999998731 111
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCcee
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV 377 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (734)
........... |+|+++.++..+.. ..+..+++.++. ......+ ...+..+.+..++.++++...+ ..
T Consensus 220 ~~~~~~~i~~l~~~~~~~~l~~~~~d----~~i~i~d~~~~~---~~~~~~~--~~~i~~v~~s~~g~~l~s~s~D--g~ 288 (337)
T d1gxra_ 220 QHDFTSQIFSLGYCPTGEWLAVGMES----SNVEVLHVNKPD---KYQLHLH--ESCVLSLKFAYCGKWFVSTGKD--NL 288 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETT----SCEEEEETTSSC---EEEECCC--SSCEEEEEECTTSSEEEEEETT--SE
T ss_pred ccccccceEEEEEcccccccceeccc----cccccccccccc---ccccccc--ccccceEEECCCCCEEEEEeCC--Ce
Confidence 11222222333 88998887765543 458889987765 2222222 3445566665546666666665 47
Q ss_pred EEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 378 MDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 378 l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
|++||+.+++.+..+. ..+.+.++.++++++.++ +.+.. ..+.+||+
T Consensus 289 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~-t~s~D---~~I~vWdl 335 (337)
T d1gxra_ 289 LNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV-TGSGD---KKATVYEV 335 (337)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEE-EEETT---SCEEEEEE
T ss_pred EEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEE-EEeCC---CeEEEEEE
Confidence 9999998888766554 345677888888886554 33332 35777775
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.15 E-value=1.1e-08 Score=103.04 Aligned_cols=257 Identities=9% Similarity=0.011 Sum_probs=142.1
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCC------
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDIN------ 211 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~------ 211 (734)
+|...|..++|||||++||-... + ..|++||+.+++.+... .....+..++|+|||+.|+....+..-
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~-D----g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~ 127 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQ-D----GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET-T----TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCEEEEEEC-C----CceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence 44556889999999999985542 2 47999999999864322 122234688999999998877643210
Q ss_pred -CCCCCCccc--c--cCCc------------------EEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEE
Q psy4818 212 -GTADGTETT--A--HMGQ------------------KIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVST 268 (734)
Q Consensus 212 -~~~~~~~~~--~--~~~~------------------~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~ 268 (734)
......... . .... .......... .................+.+++..++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG----QQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccceecccccccccccccccccccccccccccccccccccc----cccccccccceeEeeeccccccceeEEee
Confidence 000000000 0 0000 0000000000 00000000111233455666777665322
Q ss_pred ecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee
Q psy4818 269 SNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 347 (734)
Q Consensus 269 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 347 (734)
....|.+||+.++ .....+.......... |+|+|+.|+..+. +..|..+++..... ...+.
T Consensus 204 ----~d~~v~i~d~~~~--------~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~~~~~--~~~~~ 265 (340)
T d1tbga_ 204 ----CDASAKLWDVREG--------MCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQE--LMTYS 265 (340)
T ss_dssp ----TTTEEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEE--EEEEC
T ss_pred ----cCceEEEEECCCC--------cEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeeccccc--ccccc
Confidence 2257899998872 1122222222223333 8999987776544 24588889876541 12222
Q ss_pred cCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEE
Q psy4818 348 PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
.......+..+.+..++.++++...+ ..|++||+.+++.+..+....+.|.++.+++++..++ +.+.. ..+.+|
T Consensus 266 ~~~~~~~i~~~~~s~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~-s~s~D---g~v~iW 339 (340)
T d1tbga_ 266 HDNIICGITSVSFSKSGRLLLAGYDD--FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA-TGSWD---SFLKIW 339 (340)
T ss_dssp CTTCCSCEEEEEECSSSCEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETT---SCEEEE
T ss_pred cccccCceEEEEECCCCCEEEEEECC--CEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE-EEccC---CEEEEe
Confidence 22223345556565556667766666 4699999989998888887677788899999887554 44433 246666
Q ss_pred e
Q psy4818 428 N 428 (734)
Q Consensus 428 d 428 (734)
|
T Consensus 340 d 340 (340)
T d1tbga_ 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.14 E-value=5.8e-09 Score=103.76 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=139.3
Q ss_pred CCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc--cccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 139 DGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL--KNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 139 ~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
+|...+..++|||||++||-... . ..|++||+++|+.+.... .......++|+|||+ ++.+..+.
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~s~-D----g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~------- 76 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSADA-E----GHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDD------- 76 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTT-------
T ss_pred CCCCCcEEEEECCCCCEEEEEcC-C----CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eeccccee-------
Confidence 45556889999999999885432 2 369999999998644322 122346789999997 33333222
Q ss_pred CcccccCCcEEEEEECCCCCCCC-eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFP 295 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 295 (734)
.+.++++....... ..+... .......+.++|||+.++.... ..+.+++...
T Consensus 77 ---------~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~~~~~~~-----~~i~~~~~~~----------- 129 (299)
T d1nr0a2 77 ---------HLKVVPAGGSGVDSSKAVANK--LSSQPLGLAVSADGDIAVAACY-----KHIAIYSHGK----------- 129 (299)
T ss_dssp ---------EEEEECSSSSSSCTTSCCEEE--CSSCEEEEEECTTSSCEEEEES-----SEEEEEETTE-----------
T ss_pred ---------eEEEeccCCcccccccccccc--cccccccccccccccccccccc-----cccccccccc-----------
Confidence 57777765433211 111111 1123456899999998765322 4677787543
Q ss_pred ceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc
Q psy4818 296 LKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375 (734)
Q Consensus 296 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (734)
............-.++|+++.++..+. +..|..+|+.+.. ...+........+..+.+..++..+++...+
T Consensus 130 ~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 200 (299)
T d1nr0a2 130 LTEVPISYNSSCVALSNDKQFVAVGGQ----DSKVHVYKLSGAS---VSEVKTIVHPAEITSVAFSNNGAFLVATDQS-- 200 (299)
T ss_dssp EEEEECSSCEEEEEECTTSCEEEEEET----TSEEEEEEEETTE---EEEEEEEECSSCEEEEEECTTSSEEEEEETT--
T ss_pred ccccccccccccccccccccccccccc----ccccccccccccc---ccccccccccccccccccccccccccccccc--
Confidence 111111111112238899887776554 3468889987654 2222111112334555555445556666555
Q ss_pred eeEEEEECCCCceeeee---CCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 376 SVMDLHDLNTGKRLHSF---PLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l---~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+++||+.++.....+ ..+...+..+.++++++.++. .+.. ..+++||+
T Consensus 201 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-gs~d---g~i~iwd~ 253 (299)
T d1nr0a2 201 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT-GSLD---NSVIVWNM 253 (299)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE-EETT---SCEEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccceEE-EcCC---CEEEEEEC
Confidence 46899998777654333 223456778888898865553 3322 36899998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=3.6e-09 Score=109.19 Aligned_cols=289 Identities=8% Similarity=-0.022 Sum_probs=148.9
Q ss_pred ccCCcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC-----CCCc
Q psy4818 92 KYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK-----SGSD 166 (734)
Q Consensus 92 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~-----~g~~ 166 (734)
....|.++|...|............+|..+..+++....+... + ...++|||||+.|+++... .|+.
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~------~--~~~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA------F--LSLAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC------T--TCEEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCC------C--CCcceECCCCCEEEEEcccCcccccccc
Confidence 3456778888766554332233356898887665543333321 1 1358999999999998753 3555
Q ss_pred eEEEEEEECCCCCcccccc--------cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC
Q psy4818 167 WNTLHIKDVDTGKDYPEVL--------KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 167 ~~~l~v~dl~~g~~~~~~~--------~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~ 238 (734)
...|++||+.+++.+.... .......++||||||+|++.... +..++++++.+....
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~---------------~~~v~~~d~~~~~~~ 159 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---------------SSAAAGLSVPGASDD 159 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS---------------SSCEEEEEETTTEEE
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC---------------CCeEEEEECCCCcEe
Confidence 6789999999998643211 11123578999999999877542 236777887765321
Q ss_pred CeeEEecCCCCee-----EEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEec
Q psy4818 239 DIPVVEFPNGRSL-----GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANN 313 (734)
Q Consensus 239 ~~~v~~~~~~~~~-----~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~d 313 (734)
.....+..... ...+.+++||+.+++...... ...+...... . .... .......+.++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~--~~~~~~~~~~-~--------~~~~----~~~~~~~~~~~ 222 (368)
T d1mdah_ 160 --QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP--AAAGIVGAQC-T--------GAQN----CSSQAAQANYP 222 (368)
T ss_dssp --EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC--CCCEECCCCS-C--------TTSC----BCSCCEEETTT
T ss_pred --EEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCc--eeeeeeeccc-c--------cccc----cceeecccccC
Confidence 12222211100 012456777776665433221 1122111110 0 0000 00000012222
Q ss_pred CCeEEEEeCCCCCCceEEEEecCCCCCCC--------ce----EeecCCCCceeEEEEEeeCCEEEEEEEeCC------c
Q psy4818 314 GPELIVKTTKNAPKGKVVTINLNNPCEKN--------WK----TLIPEDENRTLDVVAAVANNKLIVHYIQNV------R 375 (734)
Q Consensus 314 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~--------~~----~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~ 375 (734)
+. ++.+. ..+++.+++....... .. ...+.. .. ......+++.+++....+. .
T Consensus 223 g~--~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~--~~a~~~~~~~~~v~~~~~~~~~~~~~ 293 (368)
T d1mdah_ 223 GM--LVWAV----ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG-FQ--MVAKLKNTDGIMILTVEHSRSCLAAA 293 (368)
T ss_dssp TE--EEECB----SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS-SS--CEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred cE--EEEec----CCCEEEEeecCCceEEEeecccccceeeeeeecCCC-ce--eEEEcCCCCEEEEEecCCCceeecCC
Confidence 21 11111 1123344433222000 00 000111 01 1122234456666554432 2
Q ss_pred eeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCC
Q psy4818 376 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQD 437 (734)
Q Consensus 376 ~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~ 437 (734)
.+++++|+.+++.+..+... ..+.++.+++|++.++|...+.. ..+++||. +++
T Consensus 294 ~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~--~~v~v~D~-----~tg 347 (368)
T d1mdah_ 294 ENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGT--EVLDIYDA-----ASD 347 (368)
T ss_dssp EEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTT--TEEEEEES-----SSC
T ss_pred ceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCC--CeEEEEEC-----CCC
Confidence 57999999999877666533 34567888999987655554433 47999999 566
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.11 E-value=5.3e-09 Score=108.01 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=138.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cc--cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VL--KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~--~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
+...+|||||++||+... ...|++||+++++.... .. ....+..++||||++.|+-...+.
T Consensus 10 It~~~~s~dg~~la~~~~-----~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~----------- 73 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR----------- 73 (371)
T ss_dssp CCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS-----------
T ss_pred eEEEEECCCCCEEEEEeC-----CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC-----------
Confidence 578899999999997643 23699999988863221 11 112346889999999887665322
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~ 300 (734)
.|++|++.+........+. .....+..+.|+|||++|+..... ..+.+++++...... ......
T Consensus 74 -----~i~vWd~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~s~d----~~i~i~~~~~~~~~~-----~~~~~~ 137 (371)
T d1k8kc_ 74 -----NAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWW-----VCKHIK 137 (371)
T ss_dssp -----CEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEE-----EEEEEC
T ss_pred -----eEEEEeecccccccccccc--cccccccccccccccccceeeccc----Ccceeeeeecccccc-----cccccc
Confidence 5778887655432222222 223345678999999998865432 345555544411100 001111
Q ss_pred cccc-ceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCC-------------ceEeec-CCCCceeEEEEEeeCC
Q psy4818 301 PGMD-HHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKN-------------WKTLIP-EDENRTLDVVAAVANN 364 (734)
Q Consensus 301 ~~~~-~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-------------~~~l~~-~~~~~~~~~~~~~~~~ 364 (734)
.... ..... |+|||+.|+..+.. ..+..+++....... ...+.. ......+..+.+..++
T Consensus 138 ~~~~~~v~~v~~~p~~~~l~s~s~D----~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 213 (371)
T d1k8kc_ 138 KPIRSTVLSLDWHPNSVLLAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 213 (371)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred cccccccccccccccccceeccccC----cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc
Confidence 1111 22333 89999877654432 346667764322000 011111 1112233444444434
Q ss_pred EEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 365 KLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 365 ~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+++...+ ..|.+||+.+++.+..+......+.++.+++++. ++...+ ..-..++.++.
T Consensus 214 ~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~-~la~g~--d~~~~~~~~~~ 273 (371)
T d1k8kc_ 214 SRVAWVSHD--STVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGH--DCFPVLFTYDS 273 (371)
T ss_dssp SEEEEEETT--TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEET--TSSCEEEEEET
T ss_pred ccccccccC--CcceEEeeecccceeeeecccccceeeeecCCCC-EEEEEc--CCceEEEEeeC
Confidence 555555555 4799999988887777766555677788888874 433322 22345677776
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=6.2e-09 Score=105.04 Aligned_cols=268 Identities=11% Similarity=-0.018 Sum_probs=124.9
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcc-cc---cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PE---VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 219 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~-~~---~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~ 219 (734)
+..++|||||++|+.+.... ..|.+|++.++... .. .........++|||||++|+......
T Consensus 39 v~~la~spDG~~L~v~~~~d----~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~---------- 104 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA---------- 104 (333)
T ss_dssp CCCEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT----------
T ss_pred EeEEEEeCCCCEEEEEECCC----CeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCC----------
Confidence 56789999999996554323 25777777655421 11 11122235789999999988765322
Q ss_pred cccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 220 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 220 ~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
..+..+......... ............++.+||||++++..... ...+++++..+. .............
T Consensus 105 -----~~v~~~~~~~~~~~~--~~~~~~~~~~~~~v~~s~d~~~~~~~~~~---~~~i~~~~~~~~-~~~~~~~~~~~~~ 173 (333)
T d1ri6a_ 105 -----GNVSVTRLEDGLPVG--VVDVVEGLDGCHSANISPDNRTLWVPALK---QDRICLFTVSDD-GHLVAQDPAEVTT 173 (333)
T ss_dssp -----TEEEEEEEETTEEEE--EEEEECCCTTBCCCEECTTSSEEEEEEGG---GTEEEEEEECTT-SCEEEEEEEEEEC
T ss_pred -----Cceeeecccccccee--cccccCCCccceEEEeeecceeeeccccc---cceeeEEEeccC-Ccceeeeceeeee
Confidence 245555444332111 11111112223467899999998765432 256777777651 1111000000000
Q ss_pred eccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec--CC--CCceeEEEEE-eeCCEEEEEEEeCC
Q psy4818 300 IPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP--ED--ENRTLDVVAA-VANNKLIVHYIQNV 374 (734)
Q Consensus 300 ~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~--~~~~~~~~~~-~~~~~l~~~~~~~~ 374 (734)
..+.......+++++..++..... .....++.++...........+.. .. .........+ .+++.+++.....+
T Consensus 174 ~~g~~p~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~ 252 (333)
T d1ri6a_ 174 VEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 252 (333)
T ss_dssp STTCCEEEEEECTTSSEEEEEETT-TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred ecCCCccEEEEeccceeEEeeccc-cCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCC
Confidence 011111122378888776655443 222334443333222100111111 11 0111122223 34344554443333
Q ss_pred ceeEEEEECCCCceeeeeCC-C-CceEEeeccCcccceEEEEEecCCCCceEEEEeCCCCcCCCCCCceeEEee
Q psy4818 375 RSVMDLHDLNTGKRLHSFPL-D-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRE 446 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~-~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~ 446 (734)
...++.++. +++....... + .+...++.++||++.+++.. +...--.+|.+|. ++| .++.+..
T Consensus 253 ~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~-~~~~~v~v~~id~-----~tG--~l~~~~~ 317 (333)
T d1ri6a_ 253 LITVFSVSE-DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVG-----EQG--LLHEKGR 317 (333)
T ss_dssp EEEEEEECT-TSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC-TTTCEEEEEEEET-----TTT--EEEEEEE
T ss_pred eEEEEEEcC-CCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE-CCCCeEEEEEEEC-----CCC--cEEEEEe
Confidence 334444443 2322222211 1 22334677889998876653 2222234666677 577 4444443
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.06 E-value=4.1e-10 Score=117.67 Aligned_cols=119 Identities=15% Similarity=0.042 Sum_probs=84.5
Q ss_pred CCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcC------eEEEEEecccCCCCCchhhhccc
Q psy4818 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN------GIYAIPNIRGGGELGEDWHNAGR 541 (734)
Q Consensus 468 dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G------~~v~~~~~rG~~~~g~~~~~~~~ 541 (734)
||.+|+..-+... .+..|.||++||.+++...+ .. ....|++.| |.|++||.|| ||.+-. .
T Consensus 90 ~G~~iHf~h~~~~----~~~~~pLlLlHG~P~s~~~w--~~-vi~~La~~g~~~~~~f~VIaPDLpG---~G~S~~---P 156 (394)
T d1qo7a_ 90 EGLTIHFAALFSE----REDAVPIALLHGWPGSFVEF--YP-ILQLFREEYTPETLPFHLVVPSLPG---YTFSSG---P 156 (394)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCCGGGG--HH-HHHHHHHHCCTTTCCEEEEEECCTT---STTSCC---C
T ss_pred CCEEEEEEEEecc----CCCCCEEEEeccccccHHHH--HH-HHHhhccccCCcccceeeecccccc---cCCCCC---C
Confidence 8988887666543 34567889999999887654 33 346677667 9999999999 542211 1
Q ss_pred cccCCCchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 542 LLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.......+.++...+..|.+. ...++..++|+|+||.++..++.++|+..+++++...
T Consensus 157 ~~~~~y~~~~~a~~~~~l~~~--lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 157 PLDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp CSSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCccCHHHHHHHHHHHHhh--ccCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 122335566777777766665 2335688999999999999999999998887776543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.05 E-value=9.7e-08 Score=100.32 Aligned_cols=323 Identities=10% Similarity=0.027 Sum_probs=163.6
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT 177 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~ 177 (734)
.+...++++...+ ++. +.+.+...+...--++. + ..+.+++|||||++|+.+ +..| .|.+||+++
T Consensus 28 ~d~~~~~~V~~~~-dg~--v~vwD~~t~~~~~~l~~-----g--~~~~~vafSPDGk~l~~~-~~d~----~v~vwd~~t 92 (426)
T d1hzua2 28 LDLPNLFSVTLRD-AGQ--IALVDGDSKKIVKVIDT-----G--YAVHISRMSASGRYLLVI-GRDA----RIDMIDLWA 92 (426)
T ss_dssp CCGGGEEEEEETT-TTE--EEEEETTTCSEEEEEEC-----C--SSEEEEEECTTSCEEEEE-ETTS----EEEEEETTS
T ss_pred CCCCeEEEEEEcC-CCE--EEEEECCCCcEEEEEeC-----C--CCeeEEEECCCCCEEEEE-eCCC----CEEEEEccC
Confidence 4556666666554 223 44445444443222221 1 126789999999998644 4333 699999999
Q ss_pred CCcccc-c----cccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC-----
Q psy4818 178 GKDYPE-V----LKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP----- 246 (734)
Q Consensus 178 g~~~~~-~----~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~----- 246 (734)
++.... . .... ...++.|||||++|+...... ..+.+++..+..... +....
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~---------------~~v~i~d~~~~~~~~--~~~~~~~~~~ 155 (426)
T d1hzua2 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP---------------PQFAIMDGETLEPKQ--IVSTRGMTVD 155 (426)
T ss_dssp SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES---------------SEEEEEETTTCCEEE--EEECCEECSS
T ss_pred CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC---------------CeEEEEcCCccceeE--EeeccCCCcc
Confidence 874321 1 1111 113567889999988765432 256667766543211 11100
Q ss_pred ----CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEe
Q psy4818 247 ----NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKT 321 (734)
Q Consensus 247 ----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s 321 (734)
........+..|+|++.+++.... ...+..++..++.. . ....+........ .++++|++++...
T Consensus 156 ~~~~~~~~~~~~i~~s~d~~~~~~~~~~---~~~i~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~g~~~~~a~ 225 (426)
T d1hzua2 156 TQTYHPEPRVAAIIASHEHPEFIVNVKE---TGKVLLVNYKDIDN------L-TVTSIGAAPFLADGGWDSSHRYFMTAA 225 (426)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETT---TTEEEEEECSSSSS------C-EEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred ceeecCCCceeEEEECCCCCEEEEecCC---CCeEEEEEeccccc------e-eeEEeccCCccEeeeECCCCcEEEeee
Confidence 001123456778888887765432 25677777665211 1 1111222222222 3889988777655
Q ss_pred CCCCCCceEEEEecCCCCCCCceEeecCCC-Cc-eeEEEEEeeCCEEEEEEEeCCceeEEEEECCC-------Cceeeee
Q psy4818 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDE-NR-TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNT-------GKRLHSF 392 (734)
Q Consensus 322 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~-------g~~~~~l 392 (734)
.. ...+..++..+.. .....+... .. ........++...++.....+...+.+++... ++....+
T Consensus 226 ~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l 299 (426)
T d1hzua2 226 NN---SNKVAVIDSKDRR---LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 299 (426)
T ss_dssp TT---CSEEEEEETTTTE---EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEE
T ss_pred ec---ccceeeeeccccc---EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEE
Confidence 43 2457778877654 222222221 11 11111222223444444444445566665432 3444555
Q ss_pred CCCCceEEeeccCcccceEEEEEecC---CCCceEEEEeCCCCcCCCCCCceeEEeeccCCCCCCCCceEEEEEEEcCCC
Q psy4818 393 PLDLGQITHISGRRKYNEVFYGFTSF---LQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDG 469 (734)
Q Consensus 393 ~~~~g~v~~~~~~~d~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 469 (734)
......+..+.++||+..+++..+-. ..-..+.++|+ ++++...+++.......+....-.+-.+.| |.||
T Consensus 300 ~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~-----~t~~~~~~~~~~~~~~~~~~~~~rv~~~~f-SpDG 373 (426)
T d1hzua2 300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL-----KNLDAKYQVLPIAEWADLGEGAKRVVQPEY-NKRG 373 (426)
T ss_dssp ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET-----TCTTSCCEEECHHHHHCCCSSCCCEEEEEE-CSSS
T ss_pred ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC-----CCCCcCeEEeccchhcccCCCCccEEEEEE-CCCC
Confidence 55444456788899998887643211 01135889998 566322233221111112222223444445 6788
Q ss_pred cEEeE
Q psy4818 470 TRVPM 474 (734)
Q Consensus 470 ~~i~~ 474 (734)
+.|-.
T Consensus 374 k~i~v 378 (426)
T d1hzua2 374 DEVWF 378 (426)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87644
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.00 E-value=3.6e-07 Score=90.00 Aligned_cols=228 Identities=12% Similarity=0.087 Sum_probs=135.1
Q ss_pred EEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCC
Q psy4818 156 FAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTE 235 (734)
Q Consensus 156 la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~ 235 (734)
.||+...++ ..|.|+|+++++.+.....+....+++|||||++||.+... ..+|.++++.+.
T Consensus 3 ~~yV~~~~~---~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~---------------~~~i~v~d~~t~ 64 (301)
T d1l0qa2 3 FAYIANSES---DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAH---------------SNDVSIIDTATN 64 (301)
T ss_dssp EEEEEETTT---TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGG---------------GTEEEEEETTTT
T ss_pred EEEEEECCC---CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECC---------------CCEEEEEECCCC
Confidence 466665433 36999999999865433222233578999999998765432 237999999876
Q ss_pred CCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE-EEEEecC
Q psy4818 236 QDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH-EIIANNG 314 (734)
Q Consensus 236 ~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~-~~~s~dg 314 (734)
.. +..+.... ....+.+++||+++++.... ...+.+++..++. ....+....... ..+++||
T Consensus 65 ~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~dg 127 (301)
T d1l0qa2 65 NV--IATVPAGS---SPQGVAVSPDGKQVYVTNMA---SSTLSVIDTTSNT---------VAGTVKTGKSPLGLALSPDG 127 (301)
T ss_dssp EE--EEEEECSS---SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE---------EEEEEECSSSEEEEEECTTS
T ss_pred ce--eeeeeccc---cccccccccccccccccccc---cceeeecccccce---------eeeeccccccceEEEeecCC
Confidence 42 22222222 23578999999998875432 3578888987721 122222222222 2489999
Q ss_pred CeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCC
Q psy4818 315 PELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL 394 (734)
Q Consensus 315 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~ 394 (734)
+.+++....+ ..+..++..+.. ....+... .. ...+.+..++..++....+ ...+.+++....+....+..
T Consensus 128 ~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (301)
T d1l0qa2 128 KKLYVTNNGD---KTVSVINTVTKA---VINTVSVG-RS-PKGIAVTPDGTKVYVANFD-SMSISVIDTVTNSVIDTVKV 198 (301)
T ss_dssp SEEEEEETTT---TEEEEEETTTTE---EEEEEECC-SS-EEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEEC
T ss_pred Ceeeeeeccc---cceeeeeccccc---eeeecccC-CC-ceEEEeeccccceeeeccc-ccccccccccceeeeecccc
Confidence 9888776542 457778877654 23333333 22 2333343333333334333 24566777755555444443
Q ss_pred CCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 395 DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 395 ~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
. ....++.++++++.+++.... .....++++|+
T Consensus 199 ~-~~~~~~~~~~~g~~~~v~~~~-~~~~~v~v~D~ 231 (301)
T d1l0qa2 199 E-AAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDT 231 (301)
T ss_dssp S-SEEEEEEECTTSSEEEEEEEC-SSCCEEEEEET
T ss_pred c-CCcceeecccccccccccccc-ceeeeeeeeec
Confidence 3 334466777888887765443 33457999999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.00 E-value=1.2e-08 Score=103.11 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=66.3
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-cc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
++++|++|++|+..... .+|.|||+++++.+... .. .....+++|||||+.+|.+...
T Consensus 1 g~a~~~~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~--------------- 60 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--------------- 60 (346)
T ss_dssp CCCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT---------------
T ss_pred CccCCCCCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC---------------
Confidence 46899999999976642 37999999999875422 22 2233689999999988765431
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCC----eeEEEEEEecCCcEEEEEE
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGR----SLGLHSEVTDCGRYLLVST 268 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~----~~~~~~~~SpDG~~l~~~~ 268 (734)
...|+++++.++.. +..+...... ....++++||||+++++..
T Consensus 61 ~~~v~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 61 YGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp TTEEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CCcEEEEeCccCee--eeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence 23788899877532 1111111111 0113578999999998764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.00 E-value=1.1e-07 Score=97.44 Aligned_cols=171 Identities=12% Similarity=0.005 Sum_probs=103.6
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+...++||||+++++......+...++|++|.++|+.+.....+ ....++|||||++|++........ .....
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~~------~~~~~ 95 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSRI------AKGKR 95 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCcc------ccccc
Confidence 45688999999998775544444468999999999976533222 234789999999999987543110 00122
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCee-----EEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSL-----GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~-----~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
...|.++++.+.+.. .....+..... ...+.+++||+.+++..... ...+.+++..+. ....
T Consensus 96 ~~~v~v~D~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--~~~~~~~~~~~~---------~~~~ 162 (373)
T d2madh_ 96 TDYVEVFDPVTFLPI--ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA--GPAVGLVVQGGS---------SDDQ 162 (373)
T ss_pred ceEEEEEECCCCcEE--EEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC--CCceEEeeccCC---------eEEE
Confidence 346888888776432 11111111111 13478999999998765432 245667776651 1111
Q ss_pred eeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCC
Q psy4818 299 VIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 299 l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 339 (734)
.. .......++++|+.+++.... +..+.+++..+..
T Consensus 163 ~~--~~~~~~~~s~~g~~~~v~~~~---dg~~~~~~~~~~~ 198 (373)
T d2madh_ 163 LL--SSPTCYHIHPGAPSTFYLLCA---QGGLAKTDHAGGA 198 (373)
T ss_pred Ee--ccceeEEEecCCCcEEEEEcC---CCeEEEEEcCCce
Confidence 11 111222389999887765543 3458888887654
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.9e-09 Score=104.88 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=67.9
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhc--CeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
+| ||++||.+++.. .|.. ....|.+. ||.|+++|.||. |..-.. ....++++...+..++++.
T Consensus 3 ~P-vvllHG~~~~~~--~~~~-~~~~l~~~~~~~~v~~~d~~G~---g~S~~~------~~~~~~~~~~~l~~~l~~l-- 67 (268)
T d1pjaa_ 3 KP-VIVVHGLFDSSY--SFRH-LLEYINETHPGTVVTVLDLFDG---RESLRP------LWEQVQGFREAVVPIMAKA-- 67 (268)
T ss_dssp CC-EEEECCTTCCGG--GGHH-HHHHHHHHSTTCCEEECCSSCS---GGGGSC------HHHHHHHHHHHHHHHHHHC--
T ss_pred CC-EEEECCCCCCHH--HHHH-HHHHHHhhCCCeEEEEeCCCCC---CCCCCc------cccCHHHHHHHHHHHHhcc--
Confidence 45 567899876654 3433 33445443 899999999994 433111 1234566666666655553
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCC-ceeEEEEcCC
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPE-LYGAALILVG 601 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~~~ 601 (734)
. +++.++|||+||.++..++.++|+ .++.+|+..+
T Consensus 68 ~-~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 68 P-QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp T-TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred C-CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 3 689999999999999999999998 5888877665
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=2.8e-07 Score=90.96 Aligned_cols=239 Identities=9% Similarity=0.035 Sum_probs=140.2
Q ss_pred CcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCc
Q psy4818 140 GTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTE 218 (734)
Q Consensus 140 ~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~ 218 (734)
+...+..++|||||++||-+.. + ..|++||+.+++.+.... ....+..+.|+|++..++....+.
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~-D----g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~--------- 81 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASE-D----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM--------- 81 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEES-S----SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred CCCCeEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc---------
Confidence 4456889999999998875432 2 469999999998654322 122336789999999888765422
Q ss_pred ccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCcee
Q psy4818 219 TTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 298 (734)
Q Consensus 219 ~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 298 (734)
.+..++..... ................++|+++.++.... ...+.++|+.++. ....
T Consensus 82 -------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~--------~~~~ 138 (317)
T d1vyhc1 82 -------TIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQTGY--------CVKT 138 (317)
T ss_dssp -------CCCEEETTSSC----EEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCC--------EEEE
T ss_pred -------ccccccccccc----cccccccccccceeeeccCCCceEEeecc----CcceeEeecccce--------eeeE
Confidence 22333333221 11111122234567899999999875432 2578899998731 2222
Q ss_pred eeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEE------------------
Q psy4818 299 VIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVA------------------ 359 (734)
Q Consensus 299 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~------------------ 359 (734)
+.......... |++++..|+..+.. ..+..+++.+.. ....+... ...+..+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~d----~~v~~~~~~~~~---~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 210 (317)
T d1vyhc1 139 FTGHREWVRMVRPNQDGTLIASCSND----QTVRVWVVATKE---CKAELREH-RHVVECISWAPESSYSSISEATGSET 210 (317)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCC---EEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred EccCCCcceeeecccCCCEEEEEeCC----CeEEEEeeccce---eeEEEecC-CCCceEEEEeeccccceeecccccee
Confidence 32222222333 78888876654432 347777776543 11111111 11111111
Q ss_pred --EeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 360 --AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 360 --~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
....+.++++...+ ..+++|++.+++.+..+......+..+.++++++.++.. +.. ..+.+||+
T Consensus 211 ~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d---g~i~iwd~ 276 (317)
T d1vyhc1 211 KKSGKPGPFLLSGSRD--KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC-ADD---KTLRVWDY 276 (317)
T ss_dssp ------CCEEEEEETT--SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE-ETT---TEEEEECC
T ss_pred eeeccCCceeEeccCC--CEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEE-ECC---CeEEEEEC
Confidence 11113445555555 478899998898877777666677788888888766543 322 46999998
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.97 E-value=1.2e-09 Score=99.99 Aligned_cols=169 Identities=15% Similarity=-0.022 Sum_probs=101.8
Q ss_pred CcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCCCC
Q psy4818 488 NPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKP 567 (734)
Q Consensus 488 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 567 (734)
.| ||++||..+... .|. .+...|.++||.++.++.+|.+.....- ....+++...++.+.++ ...
T Consensus 3 ~P-Vv~vHG~~~~~~--~~~-~l~~~l~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~i~~~~~~--~~~ 67 (179)
T d1ispa_ 3 NP-VVMVHGIGGASF--NFA-GIKSYLVSQGWSRDKLYAVDFWDKTGTN---------YNNGPVLSRFVQKVLDE--TGA 67 (179)
T ss_dssp CC-EEEECCTTCCGG--GGH-HHHHHHHHTTCCGGGEEECCCSCTTCCH---------HHHHHHHHHHHHHHHHH--HCC
T ss_pred CC-EEEECCCCCCHH--HHH-HHHHHHHHcCCeEEEEecCCcccccccc---------chhhhhHHHHHHHHHHh--cCC
Confidence 35 466899765443 343 3456777889999999988844322110 11245566666666554 344
Q ss_pred CcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcchhccccccccCcccccccCCCCCHHHHHHHHhCCccCCCCCC
Q psy4818 568 KYITIMGGSNGGLLVGACLNQR--PELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 645 (734)
Q Consensus 568 ~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~p 645 (734)
+++.++|||+||.++..++.+. |++++.+|+.++-....... ..+ ....+
T Consensus 68 ~~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~------------~l~----------------~~~~~ 119 (179)
T d1ispa_ 68 KKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK------------ALP----------------GTDPN 119 (179)
T ss_dssp SCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB------------CCC----------------CSCTT
T ss_pred ceEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh------------hcC----------------Ccccc
Confidence 6899999999999999998765 56788888766532111000 000 01111
Q ss_pred CCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchHHhHHHHHHHHHHHH
Q psy4818 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722 (734)
Q Consensus 646 ~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 722 (734)
...| ++.++|..|..|++..+ ++. +. +.+..++.+|...... -+..+.+.+||.
T Consensus 120 ---~~~~-~~~i~~~~D~~v~~~~~-----~l~---------~~--~~~~~~~~~H~~l~~~---~~v~~~i~~~L~ 173 (179)
T d1ispa_ 120 ---QKIL-YTSIYSSADMIVMNYLS-----RLD---------GA--RNVQIHGVGHIGLLYS---SQVNSLIKEGLN 173 (179)
T ss_dssp ---CCCE-EEEEEETTCSSSCHHHH-----CCB---------TS--EEEEESSCCTGGGGGC---HHHHHHHHHHHT
T ss_pred ---cCce-EEEEEecCCcccCchhh-----cCC---------Cc--eEEEECCCCchhhccC---HHHHHHHHHHHh
Confidence 2334 89999999999987643 121 11 3456789999653222 134444556654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.96 E-value=5.9e-08 Score=97.54 Aligned_cols=246 Identities=13% Similarity=0.006 Sum_probs=129.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc------cccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL------KNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~------~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
...+++||||++|+.+.... ..|++||+++|+.+.... .......++|||||+.++..........
T Consensus 36 ~~~i~~spDg~~l~v~~~~~----~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~---- 107 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL---- 107 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS----
T ss_pred ccEEEECCCCCEEEEEECCC----CeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee----
Confidence 45789999999887654333 369999999998643211 1112357899999999988765431100
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCce
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
.........+..++..+... +..+.... ....+.+||||++++... .+++++|..++... .
T Consensus 108 ~~~~~~~~~~~~~d~~~~~~--~~~~~~~~---~~~~~~~s~dg~~l~~~~------~~~~~~d~~~~~~~--------~ 168 (337)
T d1pbyb_ 108 THFEVQPTRVALYDAETLSR--RKAFEAPR---QITMLAWARDGSKLYGLG------RDLHVMDPEAGTLV--------E 168 (337)
T ss_dssp SCEEECCCEEEEEETTTTEE--EEEEECCS---SCCCEEECTTSSCEEEES------SSEEEEETTTTEEE--------E
T ss_pred eeccccccceeeccccCCeE--EEeccccC---CceEEEEcCCCCEEEEEc------CCcceeeeecCcEE--------E
Confidence 00011234667777665532 22222222 234679999999998642 24566776652100 0
Q ss_pred eeeccccceEEEEEecCCeEE-------------EEeCC-------CCCCceEEEEecCCCCCCCceE-eecCCCCceeE
Q psy4818 298 TVIPGMDHHHEIIANNGPELI-------------VKTTK-------NAPKGKVVTINLNNPCEKNWKT-LIPEDENRTLD 356 (734)
Q Consensus 298 ~l~~~~~~~~~~~s~dg~~l~-------------~~s~~-------~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~ 356 (734)
.+..........+++++..++ ..... ......+..+++.++. +.. ..... .....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~ 244 (337)
T d1pbyb_ 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAMREVRIM-DVFYF 244 (337)
T ss_dssp EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEEC-SSCEE
T ss_pred EeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc---EEEEEecCC-CcceE
Confidence 000000000000111111111 11110 0112357777776554 121 11122 12222
Q ss_pred EEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 357 VVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+..++..++... ..+.+||+++++.+..+..+ ..+.++.+++|++.+++... -..+.+||+
T Consensus 245 ~~~~~~~~~~~~~~~----~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dG~~l~v~~~----~~~i~v~D~ 308 (337)
T d1pbyb_ 245 STAVNPAKTRAFGAY----NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA----LGDLAAYDA 308 (337)
T ss_dssp EEEECTTSSEEEEEE----SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB----SSEEEEEET
T ss_pred EEEecccceEEEEcc----ccEEEEECCCCcEEEEEcCC-CCEEEEEECCCCCEEEEEeC----CCcEEEEEC
Confidence 222333233333332 46999999999887777654 33457888999988876532 257999999
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=3.6e-08 Score=99.56 Aligned_cols=242 Identities=9% Similarity=0.082 Sum_probs=134.8
Q ss_pred EEEeeEEeCC--CCcEEEEEEeCCCCceEEEEEEECCCCCcccccc---------cccccCeeEEEcCCcEEEEEEEecC
Q psy4818 142 TALKLYAFSD--NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL---------KNVKFPSISWTHDHKGFFYNQYCDI 210 (734)
Q Consensus 142 ~~~~~~~~SP--DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~---------~~~~~~~~~wSpDg~~l~y~~~~~~ 210 (734)
..+..++||| ||++||-.. .+ .+|.+||+..++...... ....+..+.|+|||+.|+......
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs-~D----g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~- 137 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGD-ES----GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR- 137 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEE-TT----SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS-
T ss_pred CCEEEEEEeeCCCCCEEEEEe-CC----CCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc-
Confidence 3478899998 567776432 22 469999987765322111 111235789999999998877432
Q ss_pred CCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcc
Q psy4818 211 NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290 (734)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l 290 (734)
...+.+++..++. .+.....+......+.|+|++.+++++... ...+.+|++..+..
T Consensus 138 -------------~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~---d~~v~~~d~~~~~~--- 194 (325)
T d1pgua1 138 -------------DNFGVFISWDSGN----SLGEVSGHSQRINACHLKQSRPMRSMTVGD---DGSVVFYQGPPFKF--- 194 (325)
T ss_dssp -------------SCSEEEEETTTCC----EEEECCSCSSCEEEEEECSSSSCEEEEEET---TTEEEEEETTTBEE---
T ss_pred -------------cceEEEEeecccc----cceeeeecccccccccccccccceEEEeec---cccccccccccccc---
Confidence 1235556665542 233333334456778999999987776543 25788899876210
Q ss_pred cCCCCceeee---ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCC---ceeEEEEEeeC
Q psy4818 291 SGKFPLKTVI---PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDEN---RTLDVVAAVAN 363 (734)
Q Consensus 291 ~~~~~~~~l~---~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~ 363 (734)
..... ......... |+||+..+++....+ ..|..+|+.++. ....+..... ..+-...+.+
T Consensus 195 -----~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d---~~i~iwd~~~~~---~~~~l~~~~~~v~~~~~s~~~~d- 262 (325)
T d1pgua1 195 -----SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD---RKISCFDGKSGE---FLKYIEDDQEPVQGGIFALSWLD- 262 (325)
T ss_dssp -----EEEECSSSCTTCCEEEEEECSTTCCEEEEEETT---CCEEEEETTTCC---EEEECCBTTBCCCSCEEEEEESS-
T ss_pred -----ceecccccCCCCccEEeeeccccceeccccccc---cceeeeeecccc---ccccccccccccccceeeeeccC-
Confidence 01111 111112333 899876666554432 458889987665 2333332211 1122333455
Q ss_pred CEEEEEEEeCCceeEEEEECCCCceeeeeCCCCc--eEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 364 NKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLG--QITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g--~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..+++...++ .|++||+.+++.++.+..... ....+.+.+.++..+++.+.. ..+.+||+
T Consensus 263 g~~l~s~s~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~vwdl 325 (325)
T d1pgua1 263 SQKFATVGADA--TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD---GTLNFYEL 325 (325)
T ss_dssp SSEEEEEETTS--EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT---SCEEEEET
T ss_pred CCEEEEEeCCC--eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC---CEEEEEEC
Confidence 45556666663 699999988988777654311 111222223333344555433 35777764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.92 E-value=5.2e-08 Score=100.32 Aligned_cols=249 Identities=13% Similarity=0.090 Sum_probs=135.8
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV 175 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl 175 (734)
+.++|.+++....+ ..-.+|-.. ++..+.+... .++...+..++|||||++|+-... + ..|++||+
T Consensus 15 ~s~dg~~la~~~~~---~~i~iw~~~--~~~~~~~~~l----~gH~~~V~~l~fsp~~~~l~s~s~-D----~~i~vWd~ 80 (371)
T d1k8kc_ 15 WNKDRTQIAICPNN---HEVHIYEKS--GNKWVQVHEL----KEHNGQVTGVDWAPDSNRIVTCGT-D----RNAYVWTL 80 (371)
T ss_dssp ECTTSSEEEEECSS---SEEEEEEEE--TTEEEEEEEE----ECCSSCEEEEEEETTTTEEEEEET-T----SCEEEEEE
T ss_pred ECCCCCEEEEEeCC---CEEEEEECC--CCCEEEEEEe----cCCCCCEEEEEECCCCCEEEEEEC-C----CeEEEEee
Confidence 34677777654322 223455443 2332332211 123345889999999999885542 2 36999999
Q ss_pred CCCCcccc---cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeE
Q psy4818 176 DTGKDYPE---VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLG 252 (734)
Q Consensus 176 ~~g~~~~~---~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~ 252 (734)
.++..... ......+..+.|+||++.|+....+. .+.++.+...................+
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~----------------~i~i~~~~~~~~~~~~~~~~~~~~~~v 144 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR----------------VISICYFEQENDWWVCKHIKKPIRSTV 144 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS----------------SEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred cccccccccccccccccccccccccccccceeecccC----------------cceeeeeeccccccccccccccccccc
Confidence 87763221 11122346789999999888766422 344444443322222222222223356
Q ss_pred EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCC------Cc-eeee---ccccceEEE-EEecCCeEEEEe
Q psy4818 253 LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKF------PL-KTVI---PGMDHHHEI-IANNGPELIVKT 321 (734)
Q Consensus 253 ~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------~~-~~l~---~~~~~~~~~-~s~dg~~l~~~s 321 (734)
..+.|+|||++|+.... ...+.+|++..+......... +. ..+. ......... |+|+|+.|+..+
T Consensus 145 ~~v~~~p~~~~l~s~s~----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 220 (371)
T d1k8kc_ 145 LSLDWHPNSVLLAAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220 (371)
T ss_dssp EEEEECTTSSEEEEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred ccccccccccceecccc----CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence 67999999999875332 246788887652211100000 00 0011 111122233 899999887765
Q ss_pred CCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCc
Q psy4818 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 322 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
. +..|..+|+.++. ....+..+. ..+..+.+..++.+++.. .++...++.++...++
T Consensus 221 ~----d~~i~iwd~~~~~--~~~~~~~~~--~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 221 H----DSTVCLADADKKM--AVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK 277 (371)
T ss_dssp T----TTEEEEEEGGGTT--EEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred c----CCcceEEeeeccc--ceeeeeccc--ccceeeeecCCCCEEEEE-cCCceEEEEeeCCCce
Confidence 4 3469999997654 233343332 334555555557766654 4566677778764443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.89 E-value=2.8e-07 Score=94.82 Aligned_cols=237 Identities=11% Similarity=0.068 Sum_probs=132.7
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-------------------cccccCeeEEEcCCcEE
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-------------------KNVKFPSISWTHDHKGF 202 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-------------------~~~~~~~~~wSpDg~~l 202 (734)
..+..++|||||++||-.. . ..|.+||+.+|+.+.... ....+..++|||||+.|
T Consensus 63 ~~V~~l~fs~dg~~lasg~--d----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC--N----KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC--B----SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEe--C----CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 4478899999999998543 1 259999999887432110 11113568999999988
Q ss_pred EEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeC
Q psy4818 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDL 282 (734)
Q Consensus 203 ~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~ 282 (734)
+....+. .|.+++..+.. .+.....+...+..+.+++++..++.... ...+.+||.
T Consensus 137 ~s~~~dg----------------~v~i~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~----~~~i~~~d~ 192 (388)
T d1erja_ 137 ATGAEDR----------------LIRIWDIENRK----IVMILQGHEQDIYSLDYFPSGDKLVSGSG----DRTVRIWDL 192 (388)
T ss_dssp EEEETTS----------------CEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEET
T ss_pred eeccccc----------------ccccccccccc----ccccccccccccccccccccccccccccc----ceeeeeeec
Confidence 7765432 57778876543 22222223335667899999999875432 257899998
Q ss_pred CCCCCCcccCCCCceeeeccccceEE-EEE-ecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC-----CCcee
Q psy4818 283 HSLPDGKISGKFPLKTVIPGMDHHHE-IIA-NNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED-----ENRTL 355 (734)
Q Consensus 283 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~ 355 (734)
.+. .............. .+. ++++.|+..+. +..|..++..++.. ...+.... ....+
T Consensus 193 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v 257 (388)
T d1erja_ 193 RTG---------QCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFL--VERLDSENESGTGHKDSV 257 (388)
T ss_dssp TTT---------EEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCE--EEEEC------CCCSSCE
T ss_pred ccc---------ccccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCcc--ceeeccccccccCCCCCE
Confidence 872 11111111122222 244 45555554333 23588888876541 11221111 12334
Q ss_pred EEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee------------CCCCceEEeeccCcccceEEEEEecCCCCce
Q psy4818 356 DVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF------------PLDLGQITHISGRRKYNEVFYGFTSFLQPGT 423 (734)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l------------~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~ 423 (734)
..+.+..++..+++...+ ..+.+||+.+++..... ......+..+.++++++.++. .+.. ..
T Consensus 258 ~~l~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-g~~d---g~ 331 (388)
T d1erja_ 258 YSVVFTRDGQSVVSGSLD--RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSKD---RG 331 (388)
T ss_dssp EEEEECTTSSEEEEEETT--SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE-EETT---SE
T ss_pred EEEEECCCCCEEEEEECC--CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEE-EeCC---CE
Confidence 555555445566666655 47888988655432211 112344667788888765543 3332 47
Q ss_pred EEEEeC
Q psy4818 424 IYHCNI 429 (734)
Q Consensus 424 ~~~~d~ 429 (734)
++.||+
T Consensus 332 i~vwd~ 337 (388)
T d1erja_ 332 VLFWDK 337 (388)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999999
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.89 E-value=1.2e-08 Score=102.56 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCCCcCC------ccc-cHHH--HHHHHhcCeEEEEEecccCCCC--Cchhhhc--c---ccccCCCch
Q psy4818 486 RRNPVIIYGYGGYGVSVL------PTF-SISR--CMFLRHFNGIYAIPNIRGGGEL--GEDWHNA--G---RLLKKQNCF 549 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~------~~~-~~~~--~~~l~~~G~~v~~~~~rG~~~~--g~~~~~~--~---~~~~~~~~~ 549 (734)
.+.++||+.|+--+.+.. +.| ...+ ...++..-|-|+++|+-|++.- |..-... + .......++
T Consensus 37 ~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti 116 (357)
T d2b61a1 37 EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVV 116 (357)
T ss_dssp TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCH
T ss_pred CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCCCCCCCCCCCCcccccchh
Confidence 345899999986444322 122 1111 1345555799999999996521 1111000 0 012345678
Q ss_pred hHHHHHHHHHHHcCCCCCCcE-EEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 550 DDFQAAAEYMINKKYTKPKYI-TIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 550 ~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.|++++-.-|+++ ..-+|+ +|+|+||||+.++..+.++|+.+..+|+.++
T Consensus 117 ~D~v~aq~~Ll~~--LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~ 167 (357)
T d2b61a1 117 QDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCS 167 (357)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred HHHHHHHHHHHHH--hCcceEEEEecccHHHHHHHHHHHhhhHHHhhhccccc
Confidence 9999998888876 344567 7889999999999999999999998887766
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.84 E-value=5.1e-08 Score=102.69 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=111.5
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEe-cCC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVE-FPN 247 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~-~~~ 247 (734)
.|.+||+++++.+.....+....+++|||||++||....+ ..|.++++.+.....+.-.. ...
T Consensus 43 ~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~d----------------g~v~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 43 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRD----------------GKVNMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT----------------SEEEEEETTSSSCCEEEEEECCSE
T ss_pred EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCC----------------CCEEEEEeeCCCceEEEEEecCCC
Confidence 6999999999976543333335789999999999755422 26889998876543221111 111
Q ss_pred CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccC-CCC--ceeeeccccceEE-EEEecCCeEEEEeCC
Q psy4818 248 GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISG-KFP--LKTVIPGMDHHHE-IIANNGPELIVKTTK 323 (734)
Q Consensus 248 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~--~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 323 (734)
......++.|||||++|+..... ...+.+||.+++....... ... ...-......... .+++||+.+++....
T Consensus 107 ~~~~~~s~~~SpDG~~l~vs~~~---~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~ 183 (432)
T d1qksa2 107 ARSIETSKMEGWEDKYAIAGAYW---PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183 (432)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEE---TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCeEEecccCCCCCEEEEEcCC---CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence 22344556788999999876543 2679999998842111000 000 0000001111112 378998887776543
Q ss_pred CCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 324 NAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 324 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
...+..++..+.+...... ++.. .....+.+..+++.++....+ ...+.+++..+++....+.
T Consensus 184 ---~~~i~~~d~~~~~~~~~~~-i~~g--~~~~~~~~spdg~~~~va~~~-~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 184 ---TGKILLVDYTDLNNLKTTE-ISAE--RFLHDGGLDGSHRYFITAANA-RNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp ---TTEEEEEETTCSSEEEEEE-EECC--SSEEEEEECTTSCEEEEEEGG-GTEEEEEETTTTEEEEEEE
T ss_pred ---CCeEEEEEccCCCcceEEE-Eccc--CccccceECCCCCEEEEeccc-cceEEEeecccceEEEEec
Confidence 3468889887654111111 2222 233445454445544444433 2578889987777655443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.82 E-value=6e-06 Score=86.33 Aligned_cols=197 Identities=12% Similarity=0.082 Sum_probs=111.4
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT 177 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~ 177 (734)
.+.+.++++-.++. + .+.+.+...+....-+.. + ..+.+++|||||++|+.+ +..| .+.+||+.+
T Consensus 28 ~~~~~~~~v~~~d~-g--~v~v~D~~t~~v~~~~~~------g-~~~~~v~fSpDG~~l~~~-s~dg----~v~~~d~~t 92 (432)
T d1qksa2 28 WDLENLFSVTLRDA-G--QIALIDGSTYEIKTVLDT------G-YAVHISRLSASGRYLFVI-GRDG----KVNMIDLWM 92 (432)
T ss_dssp CCGGGEEEEEETTT-T--EEEEEETTTCCEEEEEEC------S-SCEEEEEECTTSCEEEEE-ETTS----EEEEEETTS
T ss_pred CCCCcEEEEEEcCC-C--EEEEEECCCCcEEEEEeC------C-CCeeEEEECCCCCEEEEE-cCCC----CEEEEEeeC
Confidence 34455666655542 2 244445444443332321 1 236789999999999755 3333 699999998
Q ss_pred CCcccc-c----cccc-ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC----C
Q psy4818 178 GKDYPE-V----LKNV-KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP----N 247 (734)
Q Consensus 178 g~~~~~-~----~~~~-~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~----~ 247 (734)
++.... . .... -..++.|||||++|+.+...+ ..|.+++..+++... ++... .
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~---------------~~v~i~d~~t~~~~~--~~~~~~~~~~ 155 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP---------------PQYVIMDGETLEPKK--IQSTRGMTYD 155 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET---------------TEEEEEETTTCCEEE--EEECCEECTT
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC---------------CeEEEEeCcccccee--eeccCCcccc
Confidence 874211 1 1111 113456788999988766532 268888877654221 11110 0
Q ss_pred -----CCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEEecCCeEEEEe
Q psy4818 248 -----GRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGPELIVKT 321 (734)
Q Consensus 248 -----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s 321 (734)
.......+.+||||+.+++.... ...|++++..++.. .....+-.+ ..... .++|||+++++.+
T Consensus 156 ~~~~~~~~~~~~v~~s~dg~~~~vs~~~---~~~i~~~d~~~~~~------~~~~~i~~g-~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 156 EQEYHPEPRVAAILASHYRPEFIVNVKE---TGKILLVDYTDLNN------LKTTEISAE-RFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp TCCEESCCCEEEEEECSSSSEEEEEETT---TTEEEEEETTCSSE------EEEEEEECC-SSEEEEEECTTSCEEEEEE
T ss_pred ceeccCCCceeEEEECCCCCEEEEEEcc---CCeEEEEEccCCCc------ceEEEEccc-CccccceECCCCCEEEEec
Confidence 01123457889999998876533 36899999877211 011111111 11222 3999999888776
Q ss_pred CCCCCCceEEEEecCCCC
Q psy4818 322 TKNAPKGKVVTINLNNPC 339 (734)
Q Consensus 322 ~~~~~~~~l~~~d~~~~~ 339 (734)
.. ...+..++.++..
T Consensus 226 ~~---~~~v~v~d~~~~~ 240 (432)
T d1qksa2 226 NA---RNKLVVIDTKEGK 240 (432)
T ss_dssp GG---GTEEEEEETTTTE
T ss_pred cc---cceEEEeecccce
Confidence 54 2358888887654
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.80 E-value=1.5e-08 Score=109.57 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=123.8
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc-cc--cCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR-LL--KKQ 546 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~-~~--~~~ 546 (734)
-+..-|+.|+....+++.||+||+|||.... ....+......+..+.+.+||.+|||-|. +| |-.... .. .+-
T Consensus 80 CL~LnI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~-~G--Fl~~~~~~~~~~~N 156 (517)
T d1ukca_ 80 CLFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGA-LG--FLASEKVRQNGDLN 156 (517)
T ss_dssp CCEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHH-HH--HCCCHHHHHSSCTT
T ss_pred CCEEEEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccc-ee--ecCccccccccccc
Confidence 4677788898755567789999999984322 22233332222334457899999999642 11 111000 01 112
Q ss_pred CchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc----CCCceeEEEEcCCcchhcccccccc--Cccc
Q psy4818 547 NCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ----RPELYGAALILVGALDMLRFNKFTI--AYYS 617 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~----~p~~~~a~v~~~~~~d~~~~~~~~~--~~~~ 617 (734)
..+.|++.|++|+.++ --.||++|.|+|+|+||..+.+.+.. ...+|+.+|+.+|............ ....
T Consensus 157 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~~~~~~~~~~~~~~~~ 236 (517)
T d1ukca_ 157 AGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERF 236 (517)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeecccccccccchhhHHHHHHHH
Confidence 3578999999999876 12699999999999999999877643 2349999999998543221111000 0001
Q ss_pred ccccCCCCCHHHHHHHHhCCcc-----------CCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCC
Q psy4818 618 ESEFGSPNNKTHFHNLLSYSPL-----------HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPY 686 (734)
Q Consensus 618 ~~~~g~~~~~~~~~~~~~~sp~-----------~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~ 686 (734)
....|.....+..+-|++.+.. ..... ...| .+...-.-|..+-+.+..++++. . ..
T Consensus 237 a~~lg~~~~~~~l~cLr~~~~~~L~~a~~~~~~~~~~~----~~~~-~~~~~pv~Dg~~lp~~p~~~~~~---g----~~ 304 (517)
T d1ukca_ 237 VNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSS----SPLP-DWYFLPVTDGSLVPDELYNAFDA---G----NF 304 (517)
T ss_dssp HHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCS----SSCC-SCCSCCCCCSSSSCSCHHHHHHH---T----CS
T ss_pred HhhhcccchhhhHhhhccCCHHHHHHhhhccccccccc----cccc-cccccceecccccccChHHHhhc---C----Cc
Confidence 1223433333333444433321 11100 0111 11122334655666666544433 2 22
Q ss_pred CCCcEEEEEeCCCCCCCCC
Q psy4818 687 QKNPLLLRVEQDAGHGQGT 705 (734)
Q Consensus 687 ~~~~~~~~~~~~~gH~~~~ 705 (734)
..+|+.+=...+||..+..
T Consensus 305 ~~vplliG~t~~Eg~~f~~ 323 (517)
T d1ukca_ 305 IKVPVLVGDDTDEGSNFAY 323 (517)
T ss_dssp CCCCEEEEEETBGGGGTSC
T ss_pred cccceEEeeccCchhhhhc
Confidence 2788888888889887653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.78 E-value=5.5e-08 Score=98.96 Aligned_cols=127 Identities=11% Similarity=0.002 Sum_probs=78.0
Q ss_pred EeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEE
Q psy4818 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 227 (734)
Q Consensus 148 ~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l 227 (734)
+.||||+++++.....+....++|++|+++|+.+.....+. ...++|||||++||+....... .....+...|
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~~l~v~~~~~~~------~~~g~~d~~v 80 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHASTVFSR------IARGERTDYV 80 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SCEEEECTTSSCEEEEEEEEEE------TTEEEEEEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-CCceEEcCCCCEEEEEeCCCcc------ccccCCCCEE
Confidence 56999999965544444455789999999998755332222 3578999999999887542210 0000112368
Q ss_pred EEEECCCCCCCCeeEEecCCCCe-----eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 228 YYHVLGTEQDKDIPVVEFPNGRS-----LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 228 ~~~~l~t~~~~~~~v~~~~~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
+++++.++..... + ..+.... ....+.|||||+++++.... ....+++++..++
T Consensus 81 ~v~D~~t~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--~~~~~~~~~~~~~ 139 (355)
T d2bbkh_ 81 EVFDPVTLLPTAD-I-ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--PAPAVGVVDLEGK 139 (355)
T ss_dssp EEECTTTCCEEEE-E-EETTCCCCCBSCCGGGEEECTTSSEEEEEECS--SSCEEEEEETTTT
T ss_pred EEEECCCCCEEEE-E-ecCCcceeecCCCCceEEEecCCCeeEEecCC--CCceeeeeecCCC
Confidence 8888877643211 1 1111110 01246899999999875432 2357888898873
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=1e-06 Score=90.29 Aligned_cols=247 Identities=14% Similarity=0.064 Sum_probs=136.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..++|||||++|+.... . ..|++||..+++.+..... ......+.|++++..++....+.
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~-d----g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~----------- 185 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAE-D----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR----------- 185 (388)
T ss_dssp CBEEEEEECTTSSEEEEEET-T----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------
T ss_pred CCEEEEEECCCCCcceeccc-c----cccccccccccccccccccccccccccccccccccccccccce-----------
Confidence 44788999999999986553 2 3599999998876443322 22235789999999887765422
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEE-ecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV-TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
.+.++++.+... ...... .. ......+ ++||++|+.... ...|+++++.++..... ........
T Consensus 186 -----~i~~~d~~~~~~--~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~-~~~~~~~~ 250 (388)
T d1erja_ 186 -----TVRIWDLRTGQC--SLTLSI--ED-GVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVER-LDSENESG 250 (388)
T ss_dssp -----EEEEEETTTTEE--EEEEEC--SS-CEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEE-EC------
T ss_pred -----eeeeeecccccc--cccccc--cc-ccccccccCCCCCeEEEEcC----CCeEEEeecccCcccee-eccccccc
Confidence 677888765431 111221 12 2233444 557888775332 25789999887321000 00000001
Q ss_pred eccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCc--------eEeecCCCCceeEEEEEeeCCEEEEEE
Q psy4818 300 IPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNW--------KTLIPEDENRTLDVVAAVANNKLIVHY 370 (734)
Q Consensus 300 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~l~~~~ 370 (734)
.......... |+|+|+.|+..+. +..|..+|+.+...... ...........+..+.+..++.++++.
T Consensus 251 ~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg 326 (388)
T d1erja_ 251 TGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326 (388)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred cCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEE
Confidence 1111222333 8899987775443 24688888865431000 001111112233445454445666666
Q ss_pred EeCCceeEEEEECCCCceeeeeCCCCceEEee------ccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 371 IQNVRSVMDLHDLNTGKRLHSFPLDLGQITHI------SGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 371 ~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~------~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+ ..|++||+.+|+.+..+....+.|..+ .++|+++ ++++.+.. ..+.+|++
T Consensus 327 ~~d--g~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~D---g~I~iW~~ 385 (388)
T d1erja_ 327 SKD--RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGD---CKARIWKY 385 (388)
T ss_dssp ETT--SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETT---SEEEEEEE
T ss_pred eCC--CEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCC---CEEEEEee
Confidence 666 479999999999888887665555444 3456664 44444443 36888877
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.75 E-value=2.2e-08 Score=99.00 Aligned_cols=103 Identities=13% Similarity=-0.008 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
.+.| ||++||.........|. .+..+|.++||.|+.+|++|.| ++ ......+++.+.++++.+. +
T Consensus 30 ~~~P-VvlvHG~~~~~~~~~~~-~~~~~L~~~Gy~v~~~d~~g~g-~~----------d~~~sae~la~~i~~v~~~--~ 94 (317)
T d1tcaa_ 30 VSKP-ILLVPGTGTTGPQSFDS-NWIPLSTQLGYTPCWISPPPFM-LN----------DTQVNTEYMVNAITALYAG--S 94 (317)
T ss_dssp CSSE-EEEECCTTCCHHHHHTT-THHHHHHTTTCEEEEECCTTTT-CS----------CHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCc-EEEECCCCCCCcchhHH-HHHHHHHhCCCeEEEecCCCCC-CC----------chHhHHHHHHHHHHHHHHh--c
Confidence 4455 56789964433322222 3567788889999999999843 11 1122356788888888775 3
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCC---ceeEEEEcCCcc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPE---LYGAALILVGAL 603 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~---~~~a~v~~~~~~ 603 (734)
..++|.|+|||+||+++.+++.++|+ ..+.+|...|-.
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~ 135 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY 135 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCT
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCC
Confidence 34689999999999999999998885 577777776643
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.73 E-value=1.8e-08 Score=95.95 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=57.9
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 565 (734)
++.|+||++||+.+... .|.. ++..|. +|.|..+|++|.++ ..+++.+.++.+.
T Consensus 15 ~~~~~l~~lhg~~g~~~--~~~~-la~~L~--~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~----- 68 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYGL--MYQN-LSSRLP--SYKLCAFDFIEEED----------------RLDRYADLIQKLQ----- 68 (230)
T ss_dssp TCSEEEEEECCTTCCGG--GGHH-HHHHCT--TEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----
T ss_pred CCCCeEEEEcCCCCCHH--HHHH-HHHHCC--CCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----
Confidence 56789999999877664 3443 455663 89999999997431 2456666555542
Q ss_pred CCCcEEEEEcChHHHHHHHHHhcCCCc
Q psy4818 566 KPKYITIMGGSNGGLLVGACLNQRPEL 592 (734)
Q Consensus 566 d~~ri~i~G~S~GG~~~~~~~~~~p~~ 592 (734)
...++.|+|||+||.++..++.+.|+.
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~ 95 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQ 95 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhh
Confidence 235689999999999999998776543
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.72 E-value=4.8e-08 Score=98.91 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=86.7
Q ss_pred EEcCCCcEEe-EEEEEec-cccCCCCCcEEEEecCCCCCcCCccccHHH---HHHHHhcCeEEEEEecccCCCCCchhhh
Q psy4818 464 FRSKDGTRVP-MYIIHRV-GALRNRRNPVIIYGYGGYGVSVLPTFSISR---CMFLRHFNGIYAIPNIRGGGELGEDWHN 538 (734)
Q Consensus 464 ~~s~dg~~i~-~~~~~p~-~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~---~~~l~~~G~~v~~~~~rG~~~~g~~~~~ 538 (734)
|+-..|..++ +.|.+-- +.....+.++||+.|+-.+.+....|-..+ ...++-.-|-|+++|+-|++ +|..-..
T Consensus 18 F~le~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p~ 96 (376)
T d2vata1 18 FTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGPC 96 (376)
T ss_dssp EECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSSTT
T ss_pred EEeCCCCCcCCceEEEEeecccCCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCCC
Confidence 4445566664 4444421 111124578999999976665544432111 13455568999999999875 3322111
Q ss_pred cc------c----cccCCCchhHHHHHHHHHHHcCCCCCCcE-EEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 539 AG------R----LLKKQNCFDDFQAAAEYMINKKYTKPKYI-TIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 539 ~~------~----~~~~~~~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.. . ......++.|.+.+-.-|+++ ..-+|+ +|+|+||||+.++..+.++|+++..+|+.++
T Consensus 97 s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~--LGI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~ 168 (376)
T d2vata1 97 SPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIAT 168 (376)
T ss_dssp SBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESC
T ss_pred CCCcccccCCcccccCCcchhHHHHHHHHHHHHH--hCcceEEEeecccHHHHHHHHHHHhchHHHhhhccccc
Confidence 10 0 123346789999987777765 233466 7889999999999999999999988887765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.72 E-value=1.3e-07 Score=99.41 Aligned_cols=232 Identities=13% Similarity=0.053 Sum_probs=125.0
Q ss_pred CeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEE
Q psy4818 126 STEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYN 205 (734)
Q Consensus 126 ~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~ 205 (734)
.++++++++.+.. .+.+++|.+.+.++.... ..+|.+||+++++.+.....+....+++||||||+||..
T Consensus 10 s~~~~~~~~~~p~-------~~~~~~d~~~~~~V~~~~---dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~ 79 (426)
T d1hzua2 10 SWKVLVKPEDRPK-------KQLNDLDLPNLFSVTLRD---AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI 79 (426)
T ss_dssp HCEESSCGGGSCS-------SCCSCCCGGGEEEEEETT---TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred hheeeCCcccCCC-------cccccCCCCeEEEEEEcC---CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEE
Confidence 3566666554432 245788888776655432 247999999999976543333334689999999988654
Q ss_pred EEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecC-CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 206 QYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFP-NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
..+ ..|.++++.+.....+.-.... .......++.|||||++|+..... ...+.++|..+
T Consensus 80 ~~d----------------~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~---~~~v~i~d~~~ 140 (426)
T d1hzua2 80 GRD----------------ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW---PPQFAIMDGET 140 (426)
T ss_dssp ETT----------------SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---SSEEEEEETTT
T ss_pred eCC----------------CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC---CCeEEEEcCCc
Confidence 321 2688999988754322211111 112344567889999999865433 25788899887
Q ss_pred CCCCcccCC-C-Cc-eeeeccccc-eEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE
Q psy4818 285 LPDGKISGK-F-PL-KTVIPGMDH-HHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA 360 (734)
Q Consensus 285 ~~~~~l~~~-~-~~-~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~ 360 (734)
+....+... . .. ......... .....++|+..+++.... ...+..++....... ....++.. ..+..+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~---~~~i~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 214 (426)
T d1hzua2 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---TGKVLLVNYKDIDNL-TVTSIGAA--PFLADGGW 214 (426)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---TTEEEEEECSSSSSC-EEEEEECC--SSEEEEEE
T ss_pred cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC---CCeEEEEEeccccce-eeEEeccC--CccEeeeE
Confidence 321110000 0 00 000000011 111356676665554332 234666655443311 11223332 23344444
Q ss_pred eeCCEEEEEEEeCCceeEEEEECCCCceeeeeC
Q psy4818 361 VANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP 393 (734)
Q Consensus 361 ~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~ 393 (734)
..+++.++....+ ...+.+++..+++....+.
T Consensus 215 ~~~g~~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 246 (426)
T d1hzua2 215 DSSHRYFMTAANN-SNKVAVIDSKDRRLSALVD 246 (426)
T ss_dssp CTTSCEEEEEETT-CSEEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEeeeec-ccceeeeecccccEEEEec
Confidence 4445544444433 3567888988887655554
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.72 E-value=5.5e-09 Score=112.09 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=88.6
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCC---cCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc-cccCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGV---SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR-LLKKQ 546 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~-~~~~~ 546 (734)
-+.+-|+.|+. ..++.||+||+|||... .....+.. ..++.+.+.+||.+|||-|- +|--...... ...+-
T Consensus 81 CL~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~--~~~~~~~~vVvV~~nYRlg~-~GFl~~~~~~~~~~gN 155 (483)
T d1qe3a_ 81 CLYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGP-FGFLHLSSFDEAYSDN 155 (483)
T ss_dssp CCEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHH-HHSCCCTTTCTTSCSC
T ss_pred CCEEEEEECCC--CCCCCceEEEEeecccccCCcccccccc--ccccccCceEEEeecccccc-hhhccccccccccccc
Confidence 57788888975 35789999999998432 22333332 24455568999999999743 2210001111 11122
Q ss_pred CchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcc
Q psy4818 547 NCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGAL 603 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~ 603 (734)
..+.|++.|++|+.++- -.||++|.|+|+|+||..+..++.. ...+|+.+|+.+|..
T Consensus 156 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 156 LGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred cccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 35889999999998761 2599999999999999999998763 234999999998854
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.72 E-value=5e-07 Score=90.78 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCCCcCC----------ccccHHH---HHHHHhcCeEEEEEecccCCCCCchhhhccc--------ccc
Q psy4818 486 RRNPVIIYGYGGYGVSVL----------PTFSISR---CMFLRHFNGIYAIPNIRGGGELGEDWHNAGR--------LLK 544 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~----------~~~~~~~---~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~--------~~~ 544 (734)
.+.++||+.|+-.+.+.. +.|-..+ ...++-.-|-|+++|.-|++. |..-..... ...
T Consensus 40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~-~ss~~~s~~p~~~~~yg~~f 118 (362)
T d2pl5a1 40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCK-GSSGPLSIHPETSTPYGSRF 118 (362)
T ss_dssp TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSS-SSSSTTSBCTTTSSBCGGGS
T ss_pred CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcc-cccCccccccccccccCcCC
Confidence 345899999986554321 2221100 123455579999999998653 321111100 123
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcE-EEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 545 KQNCFDDFQAAAEYMINKKYTKPKYI-TIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 545 ~~~~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
...++.|++++-+-|.++--+ +|+ +|+|+||||+.++..+.++|+.++.+|+.++
T Consensus 119 P~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~ 174 (362)
T d2pl5a1 119 PFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAS 174 (362)
T ss_dssp CCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred ccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhccccc
Confidence 346788998888777776323 345 5889999999999999999999999988876
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=7.7e-06 Score=80.15 Aligned_cols=244 Identities=10% Similarity=0.078 Sum_probs=136.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+..+.|+|+|.+++...... .+.+++....+..... ..........|+||++.|+....+.
T Consensus 60 ~~V~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------- 123 (317)
T d1vyhc1 60 DSVQDISFDHSGKLLASCSADM-----TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK----------- 123 (317)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTS-----------
T ss_pred CcEEEEeeeccccccccccccc-----ccccccccccccccccccccccceeeeccCCCceEEeeccCc-----------
Confidence 4578899999999998766432 4566676665532211 1122235788999999887665432
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCC-cccCCCC-cee
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG-KISGKFP-LKT 298 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~-~~~ 298 (734)
.+.++++.++.. ...+.. .......+.|+|||++|+.... ...|.++++.++... .+..... ...
T Consensus 124 -----~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~~~~~~~~~~i~~ 190 (317)
T d1vyhc1 124 -----TIKMWEVQTGYC--VKTFTG--HREWVRMVRPNQDGTLIASCSN----DQTVRVWVVATKECKAELREHRHVVEC 190 (317)
T ss_dssp -----EEEEEETTTCCE--EEEEEC--CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred -----ceeEeeccccee--eeEEcc--CCCcceeeecccCCCEEEEEeC----CCeEEEEeeccceeeEEEecCCCCceE
Confidence 677888876542 223332 2335567899999999875432 256888888762110 0000000 000
Q ss_pred ee----------ccccc-eEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEE
Q psy4818 299 VI----------PGMDH-HHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLI 367 (734)
Q Consensus 299 l~----------~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 367 (734)
+. ..... .......++..++..+ . +..|..+++.++.. ...+..+ ...+..+.+..++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---d~~i~~~~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l 262 (317)
T d1vyhc1 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-R---DKTIKMWDVSTGMC--LMTLVGH--DNWVRGVLFHSGGKFI 262 (317)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEE-T---TSEEEEEETTTTEE--EEEEECC--SSCEEEEEECSSSSCE
T ss_pred EEEeeccccceeeccccceeeeeccCCceeEecc-C---CCEEEEEECCCCcE--EEEEeCC--CCCEEEEEECCCCCEE
Confidence 00 00000 0011223333333222 2 34688889876541 2223222 2344555555446666
Q ss_pred EEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEe
Q psy4818 368 VHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCN 428 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d 428 (734)
++...+ ..|++||+.+++.+..+....+.|..+.++++++.++ +.+.. ..+.+||
T Consensus 263 ~s~~~d--g~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~-s~s~D---g~i~iWd 317 (317)
T d1vyhc1 263 LSCADD--KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVD---QTVKVWE 317 (317)
T ss_dssp EEEETT--TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE-EEETT---SEEEEEC
T ss_pred EEEECC--CeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEeCC---CeEEEeC
Confidence 666666 4799999988988788876667788888999887655 33332 3566654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3.5e-07 Score=91.97 Aligned_cols=244 Identities=11% Similarity=-0.006 Sum_probs=131.1
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc--cccccc--ccccCeeEEEcC--CcEEEEEEEecCCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD--YPEVLK--NVKFPSISWTHD--HKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~--~~~~~~--~~~~~~~~wSpD--g~~l~y~~~~~~~~~~~~~ 217 (734)
...++|+|+|++|||.... ...|+.+|....+. +....+ ......++|||+ |+.|+-...+
T Consensus 20 ~t~l~~~~~~~~la~~~~~----~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D--------- 86 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGK----SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES--------- 86 (325)
T ss_dssp CCCCEEETTTTEEEEEETT----EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT---------
T ss_pred eEEEEECCCCCEEEEEeCC----CEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC---------
Confidence 3467899999999997532 23566666544432 111111 112467899985 4444433322
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEec----CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCC
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVEF----PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGK 293 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 293 (734)
..|.+|++........+-... .....-+..+.|++||++|+...... ...+.+++.+++.
T Consensus 87 -------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~--~~~~~~~~~~~~~------- 150 (325)
T d1pgua1 87 -------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR--DNFGVFISWDSGN------- 150 (325)
T ss_dssp -------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS--SCSEEEEETTTCC-------
T ss_pred -------CCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc--cceEEEEeecccc-------
Confidence 256677665432211111100 01122355789999999998765432 2456667776621
Q ss_pred CCceeeeccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeec-CCCCceeEEEEEee-CCEEEEEE
Q psy4818 294 FPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP-EDENRTLDVVAAVA-NNKLIVHY 370 (734)
Q Consensus 294 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~~-~~~l~~~~ 370 (734)
....+.......... |+++++.+++.... +..+..++....+. ...+.. ......+..+.+.. .+.++++.
T Consensus 151 -~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~---d~~v~~~d~~~~~~--~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~ 224 (325)
T d1pgua1 151 -SLGEVSGHSQRINACHLKQSRPMRSMTVGD---DGSVVFYQGPPFKF--SASDRTHHKQGSFVRDVEFSPDSGEFVITV 224 (325)
T ss_dssp -EEEECCSCSSCEEEEEECSSSSCEEEEEET---TTEEEEEETTTBEE--EEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred -cceeeeecccccccccccccccceEEEeec---cccccccccccccc--ceecccccCCCCccEEeeeccccceecccc
Confidence 122222222223333 88988876665443 34588888765431 111211 12233345555543 35677766
Q ss_pred EeCCceeEEEEECCCCceeeeeCCCCceE----EeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 371 IQNVRSVMDLHDLNTGKRLHSFPLDLGQI----THISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 371 ~~~~~~~l~~~dl~~g~~~~~l~~~~g~v----~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+ ..|.+||+.+++.+..+..+...+ .++.+ ++++.+ ++.+.. ..+.+||+
T Consensus 225 ~~d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l-~s~s~D---~~i~iwd~ 280 (325)
T d1pgua1 225 GSD--RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF-ATVGAD---ATIRVWDV 280 (325)
T ss_dssp ETT--CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSSEE-EEEETT---SEEEEEET
T ss_pred ccc--cceeeeeeccccccccccccccccccceeeeec-cCCCEE-EEEeCC---CeEEEEEC
Confidence 666 468899999998877776543222 22222 455444 444433 46899999
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.69 E-value=2.1e-08 Score=100.77 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCCCCcCCc----cccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSVLP----TFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~----~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 560 (734)
..++|+| ++||..+..... .|. .+...|+++||.|+++|+||.|... ......+++.+.++.++
T Consensus 6 ~~k~Pvv-lvHG~~g~~~~~~~~~~~~-~~~~~L~~~G~~V~~~~~~g~g~s~----------~~~~~~~~l~~~i~~~~ 73 (319)
T d1cvla_ 6 ATRYPVI-LVHGLAGTDKFANVVDYWY-GIQSDLQSHGAKVYVANLSGFQSDD----------GPNGRGEQLLAYVKQVL 73 (319)
T ss_dssp CCSSCEE-EECCTTBSSEETTTEESST-THHHHHHHTTCCEEECCCBCSSCTT----------STTSHHHHHHHHHHHHH
T ss_pred CCCCCEE-EECCCCCCcchhhhhhhHH-HHHHHHHHCCCEEEEecCCCCCCCC----------CCcccHHHHHHHHHHHH
Confidence 3467865 579976654321 233 3557788889999999999844221 11123456666666665
Q ss_pred HcCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 561 ~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
+. ...+++.++|||+||.++..++.++|++++.+|+.++
T Consensus 74 ~~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~ 112 (319)
T d1cvla_ 74 AA--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112 (319)
T ss_dssp HH--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred HH--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECC
Confidence 54 3457899999999999999999999999999998765
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.68 E-value=6.3e-09 Score=112.98 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=88.7
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHH---HHHHHhcCeEEEEEecccCCCCCchhhhcc--c-cc
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISR---CMFLRHFNGIYAIPNIRGGGELGEDWHNAG--R-LL 543 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~---~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~--~-~~ 543 (734)
-+.+-|+.|+....+.+.|||||+|||.... ....|.... ...+..++.+||.+|||.|- +| |-... . ..
T Consensus 97 CL~LnI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~-~G--Fl~~~~~~~~~ 173 (534)
T d1llfa_ 97 CLTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVAS-WG--FLAGDDIKAEG 173 (534)
T ss_dssp CCEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHH-HH--HCCSHHHHHHT
T ss_pred CCEEEEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCc-cc--ccCCccccccc
Confidence 4678888898766678899999999985332 222233321 23345679999999999642 22 11110 0 11
Q ss_pred cCCCchhHHHHHHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc-----CC---CceeEEEEcCCc
Q psy4818 544 KKQNCFDDFQAAAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ-----RP---ELYGAALILVGA 602 (734)
Q Consensus 544 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~-----~p---~~~~a~v~~~~~ 602 (734)
.+-..+.|++.|++|+.++= -.||++|.|+|+|+||..+.+.+.. .| .+|+.+|+.+|.
T Consensus 174 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 174 SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 22345789999999998761 2699999999999999999877641 12 379999999874
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=8.6e-09 Score=112.05 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=90.4
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCc-CCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccc-cccCCCc
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR-LLKKQNC 548 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~-~~~~~~~ 548 (734)
-+..-|+.|++...+.+.||+||+|||.... ....+.. ..++++.+.+||.+|||-|- +| |...+. ...+-..
T Consensus 96 CL~LnI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~--~~~~~~~~vIvVt~nYRLg~-~G--Fl~~~~~~~~gN~G 170 (532)
T d2h7ca1 96 CLYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGI-WG--FFSTGDEHSRGNWG 170 (532)
T ss_dssp CCEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHH-HH--HCCCSSTTCCCCHH
T ss_pred CCEEEEEECCCCCCCCCcEEEEEEeCCcccccccccCCc--hhhhhcCceEEEEEeeccCC-Cc--cccccccccccccc
Confidence 4677888898766667899999999984332 2223332 23456679999999999742 22 111111 1112235
Q ss_pred hhHHHHHHHHHHHc--C-CCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcc
Q psy4818 549 FDDFQAAAEYMINK--K-YTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGAL 603 (734)
Q Consensus 549 ~~D~~~~~~~l~~~--~-~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~ 603 (734)
+.|.+.|++|+.++ . --||++|-|+|+|+||..+..++.. ...+|+.+|+.+|..
T Consensus 171 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 171 HLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred cHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 88999999999875 1 2699999999999999999988753 345999999988754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.66 E-value=1.9e-06 Score=85.54 Aligned_cols=251 Identities=10% Similarity=0.018 Sum_probs=131.2
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+.+++++|||+. .+ .+..+ .+|+.+|..+......... ....+++|+|||+ |+.+....
T Consensus 30 ~e~iAv~pdG~l-~v-t~~~~---~~I~~i~p~g~~~~~~~~~-~~~~gla~~~dG~-l~v~~~~~-------------- 88 (302)
T d2p4oa1 30 LENLASAPDGTI-FV-TNHEV---GEIVSITPDGNQQIHATVE-GKVSGLAFTSNGD-LVATGWNA-------------- 88 (302)
T ss_dssp EEEEEECTTSCE-EE-EETTT---TEEEEECTTCCEEEEEECS-SEEEEEEECTTSC-EEEEEECT--------------
T ss_pred cCCEEECCCCCE-EE-EeCCC---CEEEEEeCCCCEEEEEcCC-CCcceEEEcCCCC-eEEEecCC--------------
Confidence 678999999984 33 44333 3799999765432211112 2346899999997 55555422
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee-cc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI-PG 302 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~-~~ 302 (734)
..++.+.+.+.......+...+. .....++.+.+||+.++ . . .....+|.++..++............... ..
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~i~~~~~g~~~v-~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (302)
T d2p4oa1 89 -DSIPVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLT-A-D--SYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 162 (302)
T ss_dssp -TSCEEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEE-E-E--TTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred -ceEEEEEecccccceeeccccCC-ccccceeEEccCCCEEe-e-c--cccccceeeeccCCcceeEecCCccceeeccC
Confidence 13444444433333333444333 23456788999997644 2 1 22368888888763110000000000000 00
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEE
Q psy4818 303 MDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382 (734)
Q Consensus 303 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~d 382 (734)
......-++.+++.+|+.... ..+|++++.+.........+..+. ....++.+..++.+++....+ .+|.+++
T Consensus 163 ~~~~~ngi~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~--~~V~~i~ 235 (302)
T d2p4oa1 163 VFPAANGLKRFGNFLYVSNTE---KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIY--NSVVRIA 235 (302)
T ss_dssp CSCSEEEEEEETTEEEEEETT---TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTT--CCEEEEC
T ss_pred cccccccccccCCceeeecCC---CCeEEeccccccccccccccccCC--CCCcceEECCCCCEEEEEcCC--CcEEEEC
Confidence 011111256678888876543 457999998754311111222221 122345555556777665444 5799998
Q ss_pred CCCCceeeeeC--CCCceEEeecc---CcccceEEEEEec--------CCCCceEEEEeC
Q psy4818 383 LNTGKRLHSFP--LDLGQITHISG---RRKYNEVFYGFTS--------FLQPGTIYHCNI 429 (734)
Q Consensus 383 l~~g~~~~~l~--~~~g~v~~~~~---~~d~~~l~~~~ss--------~~~P~~~~~~d~ 429 (734)
. +|+.....+ .+.....++.+ ++|++.|++..+. ...|..++++++
T Consensus 236 p-~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~~~~~~~~~~~~~~ 294 (302)
T d2p4oa1 236 P-DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVRLEV 294 (302)
T ss_dssp T-TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCCEEEEEEEC
T ss_pred C-CCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCCccCCCcCCcCCCeEEEEeC
Confidence 8 576533333 22222334444 4677788876542 345667777776
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=8.9e-09 Score=112.18 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=87.9
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCC---CCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGY---GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
-+.+-|+.|.. ...++.||+||+|||. ++...+.+... .+.++.+.+||.+|||-|. +|--.........+-.
T Consensus 96 CL~LnI~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~--~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~~~gN~ 171 (542)
T d2ha2a1 96 CLYLNVWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGR--FLAQVEGAVLVSMNYRVGT-FGFLALPGSREAPGNV 171 (542)
T ss_dssp CCEEEEEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTH--HHHHHHCCEEEEECCCCHH-HHHCCCTTCSSCCSCH
T ss_pred CCEEEEEecCC-CCCCCCcEEEEEEECccccccCcccccCch--hhhhhccceeEeeeeeccc-eeeecccccccCCCcC
Confidence 46777888875 3456889999999984 23333444432 2344569999999999632 2200001011112233
Q ss_pred chhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhcC--CCceeEEEEcCCcc
Q psy4818 548 CFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQR--PELYGAALILVGAL 603 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~--p~~~~a~v~~~~~~ 603 (734)
.+.|++.|++|+.++ ---||++|-|+|+|+||..+..++... ..+|..+|+.+|..
T Consensus 172 Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 172 GLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 588999999999875 126999999999999999999887642 24899999988743
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.63 E-value=6.3e-06 Score=82.26 Aligned_cols=253 Identities=12% Similarity=0.068 Sum_probs=140.4
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCccc
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETT 220 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~ 220 (734)
..+.++.|.+||+ |.| ++..+ ..|+.++.++++...... ......++++++||+ |+.+....
T Consensus 40 ~~lEG~~~D~~G~-Ly~-~D~~~---g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~----------- 102 (319)
T d2dg1a1 40 LQLEGLNFDRQGQ-LFL-LDVFE---GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGD----------- 102 (319)
T ss_dssp CCEEEEEECTTSC-EEE-EETTT---CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTT-----------
T ss_pred cCcEeCEECCCCC-EEE-EECCC---CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCC-----------
Confidence 3467999999998 555 44433 368999998876433211 112235889999996 54443211
Q ss_pred ccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC---CceEEEEeCCCCCCCcccCCCCce
Q psy4818 221 AHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ---GSDLHYFDLHSLPDGKISGKFPLK 297 (734)
Q Consensus 221 ~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~ 297 (734)
......+...+..+... ..+...........++.+++||+ |++....... ...+++++.+++ .+.
T Consensus 103 ~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~---------~~~ 170 (319)
T d2dg1a1 103 FKSTGGIFAATENGDNL--QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR---------TVT 170 (319)
T ss_dssp SSSCCEEEEECTTSCSC--EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC---------CEE
T ss_pred CccceeEEEEcCCCcee--eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc---------eeE
Confidence 11123455555544322 12222211122345688999997 5555432211 256888887762 233
Q ss_pred eeeccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCC--c-eE-eecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 298 TVIPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKN--W-KT-LIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 298 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~-~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
.+..+...... .|++|++.||+.-.. ..+|++++++...... . .. ...........++.+..++.|+++...
T Consensus 171 ~~~~~~~~pnGia~s~dg~~lyvad~~---~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~ 247 (319)
T d2dg1a1 171 PIIQNISVANGIALSTDEKVLWVTETT---ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG 247 (319)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred EEeeccceeeeeeeccccceEEEeccc---CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC
Confidence 33333322222 399999988876432 4579999886432100 0 01 111111122345555555677776644
Q ss_pred CCceeEEEEECCCCceeeeeCCCC---c---eEEeeccCcccceEEEEEecCCCC--ceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDL---G---QITHISGRRKYNEVFYGFTSFLQP--GTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~---g---~v~~~~~~~d~~~l~~~~ss~~~P--~~~~~~d~ 429 (734)
+ ..|.++|. +|+.+..|..|. + .+.++.+.++.+.+++..++...+ ..+|.++.
T Consensus 248 ~--g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 248 Q--GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp T--TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred C--CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 3 58999997 799888887652 1 233455556666676665544333 45777776
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.63 E-value=4.4e-08 Score=96.25 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCcCC--c-cccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH
Q psy4818 485 NRRNPVIIYGYGGYGVSVL--P-TFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~--~-~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 561 (734)
..++| ||++||..+.... . .|.. ....|.++||.|+++|++| +|..+..+ +++.+.++.+.+
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~-i~~~L~~~G~~v~~~~~~~---~~~~~~~a----------~~l~~~i~~~~~ 69 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFG-IPSALRRDGAQVYVTEVSQ---LDTSEVRG----------EQLLQQVEEIVA 69 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTT-HHHHHHHTTCCEEEECCCS---SSCHHHHH----------HHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHH-HHHHHHhCCCEEEEeCCCC---CCCcHHHH----------HHHHHHHHHHHH
Confidence 35788 5788996655422 1 2443 4567788899999999998 55444432 345555555544
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 562 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
. ...+++.++|||+||+++..++.++|++++.+|..+.
T Consensus 70 ~--~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~t 107 (285)
T d1ex9a_ 70 L--SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107 (285)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred H--cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECC
Confidence 3 2346799999999999999999999999999987654
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.62 E-value=1.5e-08 Score=110.12 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=88.4
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCCCcC-Ccccc--HHH-HHHHHhcCeEEEEEecccCCCCCchhhhccc-cccC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYGVSV-LPTFS--ISR-CMFLRHFNGIYAIPNIRGGGELGEDWHNAGR-LLKK 545 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~--~~~-~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~-~~~~ 545 (734)
-+..-|+.|++...+++.||+||+|||..... ...+. ... ..+++..+.+||.+|||-|- +|---..... ...+
T Consensus 105 CL~LnI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~-~Gfl~~~~~~~~~~g 183 (544)
T d1thga_ 105 CLYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAITAEGNT 183 (544)
T ss_dssp CCEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHHHHTCT
T ss_pred CCEEEEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEeccccccc-ccccCCchhhccccc
Confidence 46778888987766788999999999843322 11222 112 23445668999999999632 1100000000 0122
Q ss_pred CCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc--------CCCceeEEEEcCCc
Q psy4818 546 QNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ--------RPELYGAALILVGA 602 (734)
Q Consensus 546 ~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--------~p~~~~a~v~~~~~ 602 (734)
-..+.|.+.|++|+.++ ---||++|-|+|+|+||..+..++.- ...+|+.+|+.+|.
T Consensus 184 N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 184 NAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp THHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred cHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 33578999999999876 12699999999999999999888752 22499999998874
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.61 E-value=2.3e-08 Score=98.68 Aligned_cols=209 Identities=10% Similarity=-0.045 Sum_probs=108.8
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHH-HHHHHHcC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA-AEYMINKK 563 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~ 563 (734)
.+..|.||++||.........|.. ++..|.. ++.|+.++++|.+... ... ......+++++.+. ++.+...
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~-la~~L~~-~~~V~al~~pG~~~~~---~~~--~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLR-LSTSFQE-ERDFLAVPLPGYGTGT---GTG--TALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHH-HHHTTTT-TCCEEEECCTTCCBC------C--BCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCceEEEeCCCCCCCCHHHHHH-HHHhcCC-CceEEEEeCCCCCCCC---CCc--cccccCCHHHHHHHHHHHHHHh-
Confidence 456789999998543333334443 4566664 7999999999943211 111 11112345555543 4444433
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcC----CCceeEEEEcCCcchhcccc----ccccCcccccccCCCCCHHHH-----
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQR----PELYGAALILVGALDMLRFN----KFTIAYYSESEFGSPNNKTHF----- 630 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~----p~~~~a~v~~~~~~d~~~~~----~~~~~~~~~~~~g~~~~~~~~----- 630 (734)
.....+.|+|||+||.++..++.+. ++...++|+..+..-..... ..............+......
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~ 207 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGR 207 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHH
Confidence 2235699999999999999888754 34556666654422111000 000000000000111111111
Q ss_pred --HHHHhCCccCCCCCCCCCccCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCCCCCCCcEEEEEeCCCCCCCCCchH
Q psy4818 631 --HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM 708 (734)
Q Consensus 631 --~~~~~~sp~~~~~~p~~~~~~P~~Li~~g~~D~~v~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~ 708 (734)
..+..+. ... +++| +|+++|+.|..++..+...+.+.+ ...++++.+++ +|...-..+
T Consensus 208 ~~~~~~~~~----~~~----~~~P-vl~i~g~~d~~~~~~~~~~w~~~~----------~~~~~~~~v~G-~H~~ml~e~ 267 (283)
T d2h7xa1 208 YARFLAGPR----PGR----SSAP-VLLVRASEPLGDWQEERGDWRAHW----------DLPHTVADVPG-DHFTMMRDH 267 (283)
T ss_dssp HHHHHHSCC----CCC----CCSC-EEEEEESSCSSCCCGGGCCCSCCC----------SSCSEEEEESS-CTTHHHHTT
T ss_pred HHHHHhhcc----ccc----cCCC-eEEEEeCCCCCCCHHHHHHHHHhC----------CCCcEEEEEcC-CCcccccCC
Confidence 1122221 122 6777 999999999999887654332211 33457778886 786321111
Q ss_pred HhHHHHHHHHHHHHH
Q psy4818 709 KSIEEMTDIYVFLMK 723 (734)
Q Consensus 709 ~~~~~~~~~~~fl~~ 723 (734)
.....+.+-+||+.
T Consensus 268 -~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 268 -APAVAEAVLSWLDA 281 (283)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHh
Confidence 12344557778764
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.59 E-value=1.4e-08 Score=110.20 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=87.5
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCC---CCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGY---GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
-+..-|+.|+.. .++.||+||+|||. ++...+.+... .++++.+.+||.+|||-|- +|--.........+-.
T Consensus 91 CL~LnI~~P~~~--~~~lPV~v~ihGG~~~~g~~~~~~~~~~--~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~~~gN~ 165 (532)
T d1ea5a_ 91 CLYLNIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGK--YLAYTEEVVLVSLSYRVGA-FGFLALHGSQEAPGNV 165 (532)
T ss_dssp CCEEEEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTH--HHHHHHTCEEEECCCCCHH-HHHCCCTTCSSSCSCH
T ss_pred CCEEEEEeCCCC--CCCCcEEEEEEcCCcccccCCccccCcc--hhhcccCccEEEEeecccc-ccccccccccCCCCcc
Confidence 466777788753 46799999999983 33333444432 3455679999999999642 2200001011112223
Q ss_pred chhHHHHHHHHHHHc--C-CCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcc
Q psy4818 548 CFDDFQAAAEYMINK--K-YTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGAL 603 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~--~-~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~ 603 (734)
.+.|.+.|++|+.++ . --||++|.|+|+|+||..+..++.. ...+|..+|+.++..
T Consensus 166 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 166 GLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred cchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 689999999999876 1 2699999999999999999988763 124899999887654
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.5e-08 Score=108.02 Aligned_cols=128 Identities=22% Similarity=0.205 Sum_probs=85.9
Q ss_pred EEeEEEEEeccccCCCCCcEEEEecCCCC---CcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCC
Q psy4818 471 RVPMYIIHRVGALRNRRNPVIIYGYGGYG---VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQN 547 (734)
Q Consensus 471 ~i~~~~~~p~~~~~~~~~P~vv~~hGg~~---~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~ 547 (734)
-+.+-|+.|.. ..++.||+||+|||.. +.....+... .+.++.+.+||.+|||-|- +|---........+-.
T Consensus 89 CL~lnI~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~--~~~~~~~vVvVt~nYRlg~-~Gfl~~~~~~~~~gN~ 163 (526)
T d1p0ia_ 89 CLYLNVWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGK--FLARVERVIVVSMNYRVGA-LGFLALPGNPEAPGNM 163 (526)
T ss_dssp CCEEEEEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTH--HHHHHHCCEEEEECCCCHH-HHHCCCTTCTTSCSCH
T ss_pred CCEEEEEeCCC--CCCCCceEEEEECCCcccccCcccccCcc--ccccccceeEEeccccccc-ccccCCCCcccccccc
Confidence 46777788875 3467899999999843 3333334432 2334569999999999642 1100000011112233
Q ss_pred chhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcc
Q psy4818 548 CFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGAL 603 (734)
Q Consensus 548 ~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~ 603 (734)
.+.|++.|++|+.++ ---||++|-|+|+|+||..+..++.. ...+|+.+|+.++-.
T Consensus 164 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 164 GLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 688999999999775 12699999999999999999877652 234899999877643
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.55 E-value=1.8e-05 Score=82.53 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=153.4
Q ss_pred CcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC----------
Q psy4818 95 APQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG---------- 164 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g---------- 164 (734)
.++|+|.+++|.-..+|.+...|++++..+++.....-++ ...+++.|++|++.|.|+.....
T Consensus 131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-------~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-------ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence 3568999999999988899999999987666422111011 11257899999999999874321
Q ss_pred -CceEEEEEEECCCCCccccc-----ccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCC
Q psy4818 165 -SDWNTLHIKDVDTGKDYPEV-----LKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDK 238 (734)
Q Consensus 165 -~~~~~l~v~dl~~g~~~~~~-----~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~ 238 (734)
.....++...+.+...-... .....+.....|.||+.++...... ......+|..++......
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~-----------~~~~~~~~~~d~~~~~~~ 272 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-----------CDPVNRLWYCDLQQESNG 272 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-----------SSSCCEEEEEEGGGSSSS
T ss_pred cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeecc-----------CCccEEEEEeeCCCcccc
Confidence 11247888888776432111 1111223456789999888766532 122346888876643321
Q ss_pred ------CeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE--EE
Q psy4818 239 ------DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE--II 310 (734)
Q Consensus 239 ------~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~ 310 (734)
.+.+....... + .. ..-+|..+++..+.......|..++++... ...|+.++...+.... .+
T Consensus 273 ~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~------~~~w~~vi~~~~~~~~~~~~ 342 (430)
T d1qfma1 273 ITGILKWVKLIDNFEGE-Y--DY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPE------ESKWKVLVPEHEKDVLEWVA 342 (430)
T ss_dssp SCSSCCCEEEECSSSSC-E--EE-EEEETTEEEEEECTTCTTCEEEEEETTBCC------GGGCEEEECCCSSCEEEEEE
T ss_pred cccccceeEeecccccc-e--EE-EecCCceeecccCcccccceeEEecCCCCc------cccceEEecccCcceeeeEE
Confidence 12233222111 1 11 223555556665554445789999988721 2346667754443222 35
Q ss_pred EecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeC-CceeEEEEECCCCce
Q psy4818 311 ANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQN-VRSVMDLHDLNTGKR 388 (734)
Q Consensus 311 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~l~~~dl~~g~~ 388 (734)
+..++.|++....+ ...+|.+++++++. +..+.+... ..+..... ..++.+.+.++.- ..+.+|.+|+++|+.
T Consensus 343 ~~~~~~lvl~~~~~-~~~~l~v~~~~~~~---~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 343 CVRSNFLVLCYLHD-VKNTLQLHDLATGA---LLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EETTTEEEEEEEET-TEEEEEEEETTTCC---EEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEECCEEEEEEEcC-CEeEEEEEECCCCc---EEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 55667776655443 46679999998776 566655543 33333332 2234677666543 346899999988863
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.51 E-value=1.8e-05 Score=77.74 Aligned_cols=242 Identities=10% Similarity=0.062 Sum_probs=138.5
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.++.|.++...|.|+--.. ..|+.+|+++|+....... ...+.+++.+||+ |++...
T Consensus 21 Egp~wd~~~~~l~wvDi~~----~~I~r~d~~~g~~~~~~~~-~~~~~i~~~~dg~-l~va~~----------------- 77 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILE----RELHELHLASGRKTVHALP-FMGSALAKISDSK-QLIASD----------------- 77 (295)
T ss_dssp EEEEEETTTTEEEEEEGGG----TEEEEEETTTTEEEEEECS-SCEEEEEEEETTE-EEEEET-----------------
T ss_pred eCCeEECCCCEEEEEECCC----CEEEEEECCCCeEEEEECC-CCcEEEEEecCCC-EEEEEe-----------------
Confidence 4799999888887754333 3699999999975332222 2236788888885 544431
Q ss_pred cEEEEEECCCCCCCCeeEEecCC-C-CeeEEEEEEecCCcEEEEEEecCC-CC--ceEEEEeCCCCCCCcccCCCCceee
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPN-G-RSLGLHSEVTDCGRYLLVSTSNNT-QG--SDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~-~-~~~~~~~~~SpDG~~l~~~~~~~~-~~--~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
..|++.+..++.. ..+..... . .....+....|+|+.. +...... .. ..+|.++ ++ ....+
T Consensus 78 ~gl~~~d~~tg~~--~~l~~~~~~~~~~~~nd~~vd~~G~iw-~~~~~~~~~~~~g~l~~~~--~g---------~~~~~ 143 (295)
T d2ghsa1 78 DGLFLRDTATGVL--TLHAELESDLPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVA--KG---------KVTKL 143 (295)
T ss_dssp TEEEEEETTTCCE--EEEECSSTTCTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEE--TT---------EEEEE
T ss_pred CccEEeeccccee--eEEeeeecCCCcccceeeEECCCCCEE-EEeccccccccceeEeeec--CC---------cEEEE
Confidence 1588888776642 22222111 1 1235567889999854 4433221 11 3444443 31 12333
Q ss_pred eccccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCC--C-CCceEeec-CCCCceeEEEEEeeCCEEEEEEEeCC
Q psy4818 300 IPGMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPC--E-KNWKTLIP-EDENRTLDVVAAVANNKLIVHYIQNV 374 (734)
Q Consensus 300 ~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~-~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (734)
..+...... .|+++++.+|+.-.. ..+|++++++... . .+....+. ........++....++.|++..-..
T Consensus 144 ~~~~~~~Ng~~~s~d~~~l~~~dt~---~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~- 219 (295)
T d2ghsa1 144 FADISIPNSICFSPDGTTGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE- 219 (295)
T ss_dssp EEEESSEEEEEECTTSCEEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-
T ss_pred eeccCCcceeeecCCCceEEEeecc---cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-
Confidence 332222222 389999998886543 4569888875321 1 11122221 1223344555555556676655433
Q ss_pred ceeEEEEECCCCceeeeeCCCCceEEeeccC-cccceEEEEEecCCC----------CceEEEEeC
Q psy4818 375 RSVMDLHDLNTGKRLHSFPLDLGQITHISGR-RKYNEVFYGFTSFLQ----------PGTIYHCNI 429 (734)
Q Consensus 375 ~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~-~d~~~l~~~~ss~~~----------P~~~~~~d~ 429 (734)
..|.++|. +|+.+..+..|...++++++- +|.++|+++..+... .+.||.+++
T Consensus 220 -g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~ 283 (295)
T d2ghsa1 220 -GAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGI 283 (295)
T ss_dssp -TEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred -CceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcC
Confidence 57999997 799888888874445555443 677888887655332 246777765
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.50 E-value=9.8e-08 Score=104.32 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=80.5
Q ss_pred CCCCCcEEEEecCCC---CCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhh-----hc-cccccCCCchhHHHH
Q psy4818 484 RNRRNPVIIYGYGGY---GVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH-----NA-GRLLKKQNCFDDFQA 554 (734)
Q Consensus 484 ~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~-----~~-~~~~~~~~~~~D~~~ 554 (734)
..++.||+||+|||. ++...+.+... .+.++.+.+||.+|||-|- +|--.. .. .....+-..+.|.+.
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~--~l~~~~~vVvVtinYRlg~-fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~ 211 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNAD--IMAAVGNVIVASFQYRVGA-FGFLHLAPEMPSEFAEEAPGNVGLWDQAL 211 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCH--HHHHHHTCEEEEECCCCTH-HHHCCCGGGSCGGGTTSSCSCHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchh--hhhhcCCeeEEeecceecc-ccccccccccccccccCCCCcccchHHHH
Confidence 357899999999984 33444455543 2334446999999999743 221000 00 011122335899999
Q ss_pred HHHHHHHcC---CCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcch
Q psy4818 555 AAEYMINKK---YTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGALD 604 (734)
Q Consensus 555 ~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~d 604 (734)
|++|+.++= --||++|-|+|+|+||..+..++.. ...+|+.+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 999998861 2599999999999999999987753 2348999998887543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.49 E-value=9.1e-06 Score=80.80 Aligned_cols=249 Identities=12% Similarity=0.111 Sum_probs=135.4
Q ss_pred EeeEEeCCCCcEEEEEEeCC---CCceEEEEEEECCCCCcccccc-----cccccCeeEEEcCCcEEEEEEEecCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKS---GSDWNTLHIKDVDTGKDYPEVL-----KNVKFPSISWTHDHKGFFYNQYCDINGTAD 215 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~---g~~~~~l~v~dl~~g~~~~~~~-----~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~ 215 (734)
..+++|.|||+. .++.... +....+|+.+|.+++....... ......++.+++||+.|+....
T Consensus 20 ~EGpa~d~dG~l-y~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------- 90 (314)
T d1pjxa_ 20 AEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------- 90 (314)
T ss_dssp CEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET--------
T ss_pred CeEeEEeCCCCE-EEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC--------
Confidence 457899999984 3333221 1112369999999887422111 1111247899999987665431
Q ss_pred CCcccccCCcEEEEEECCCCCCCCeeEEecCCCCe--eEEEEEEecCCcEEEEEEecCC------------CCceEEEEe
Q psy4818 216 GTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRS--LGLHSEVTDCGRYLLVSTSNNT------------QGSDLHYFD 281 (734)
Q Consensus 216 ~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~--~~~~~~~SpDG~~l~~~~~~~~------------~~~~i~~~d 281 (734)
...|.+.+.++.... ++....+... ...++.+.+||+. +++..... ....||.++
T Consensus 91 --------~~~i~~~~~~g~~~~--~~~~~~~g~~~~~pndl~~d~~G~l-yvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 91 --------RLGLLVVQTDGTFEE--IAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp --------TTEEEEEETTSCEEE--CCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred --------CCeEEEEeCCCcEEE--EEeccccccccCCCcEEEECCCCCE-EEecCccCcccccccceeccCCceEEEEe
Confidence 125777776543211 1111111110 1135788999964 45432211 013688887
Q ss_pred CCCCCCCcccCCCCceeeeccccceEE-EEEecCC----eEEEEeCCCCCCceEEEEecCCCCCCCceEeecC---CCCc
Q psy4818 282 LHSLPDGKISGKFPLKTVIPGMDHHHE-IIANNGP----ELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE---DENR 353 (734)
Q Consensus 282 ~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s~dg~----~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~ 353 (734)
.++ ....+..+...... .|+++++ .||+.-. ...+|++++++....-....++.. ....
T Consensus 160 ~dg----------~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T d1pjxa_ 160 TDG----------QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp TTS----------CEEEEEEEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred ecC----------ceeEeeCCcceeeeeEECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccc
Confidence 665 12233332222222 3888775 4555432 346799988764321011222221 1122
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCC
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIP 430 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~ 430 (734)
...++.+..++.|+++.. +..+|+++|.++|+.+..+..+.....++++.+|+++|+++.+.- ..++++++.
T Consensus 227 ~pdGiavD~~GnlyVa~~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~ 298 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp EEEEEEEBTTCCEEEEEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECS
T ss_pred cceeeEEecCCcEEEEEc--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECC
Confidence 344566655577777653 336899999966665556666534455677778888888865432 589999983
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.49 E-value=2.4e-06 Score=84.03 Aligned_cols=195 Identities=10% Similarity=0.071 Sum_probs=112.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
+..+.+||||+.++...+ ..+.+++....... ........++|+||++.|+....+.
T Consensus 102 ~~~~~~s~~g~~~~~~~~------~~i~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg-------------- 158 (299)
T d1nr0a2 102 PLGLAVSADGDIAVAACY------KHIAIYSHGKLTEV---PISYNSSCVALSNDKQFVAVGGQDS-------------- 158 (299)
T ss_dssp EEEEEECTTSSCEEEEES------SEEEEEETTEEEEE---ECSSCEEEEEECTTSCEEEEEETTS--------------
T ss_pred cccccccccccccccccc------cccccccccccccc---ccccccccccccccccccccccccc--------------
Confidence 567899999998876543 25778874322111 1111225789999999887665322
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
.|.++++.+.......... +...+..+.|+|+|++|+.... ...|++||+.++.. +. ....+....
T Consensus 159 --~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~--~~---~~~~~~~h~ 224 (299)
T d1nr0a2 159 --KVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANNFE--LA---HTNSWTFHT 224 (299)
T ss_dssp --EEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGTTE--ES---CCCCCCCCS
T ss_pred --ccccccccccccccccccc---cccccccccccccccccccccc----cccccccccccccc--cc---ccccccccc
Confidence 6788887654322111111 2235667899999999875432 25799999876211 10 011111122
Q ss_pred cceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEE
Q psy4818 304 DHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382 (734)
Q Consensus 304 ~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~d 382 (734)
...... |+|+|+.|+..+.. +.|..||+.++..... ..........+..+.+.+++ .+++...| ..|.+||
T Consensus 225 ~~v~~l~~s~~~~~l~sgs~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~s~s~D--~~i~iWd 296 (299)
T d1nr0a2 225 AKVACVSWSPDNVRLATGSLD----NSVIVWNMNKPSDHPI-IIKGAHAMSSVNSVIWLNET-TIVSAGQD--SNIKFWN 296 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETT----SCEEEEETTCTTSCCE-EETTSSTTSCEEEEEEEETT-EEEEEETT--SCEEEEE
T ss_pred cccccccccccccceEEEcCC----CEEEEEECCCCCcceE-EEecCCCCCcEEEEEECCCC-EEEEEeCC--CEEEEEe
Confidence 223333 89999887765543 4599999987542211 12222223445556666644 45555555 4788898
Q ss_pred C
Q psy4818 383 L 383 (734)
Q Consensus 383 l 383 (734)
+
T Consensus 297 l 297 (299)
T d1nr0a2 297 V 297 (299)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=4e-06 Score=83.59 Aligned_cols=258 Identities=11% Similarity=0.057 Sum_probs=121.2
Q ss_pred cEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEEC
Q psy4818 96 PQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV 175 (734)
Q Consensus 96 p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl 175 (734)
.+|||.++|..-... +.-.+|..+..+...++..... . ......++|||||++|+...... ..+.+++.
T Consensus 44 ~spDG~~L~v~~~~d--~~i~~~~i~~~~~~~~~~~~~~-~----~~~p~~l~~spDg~~l~v~~~~~----~~v~~~~~ 112 (333)
T d1ri6a_ 44 VSPDKRYLYVGVRPE--FRVLAYRIAPDDGALTFAAESA-L----PGSLTHISTDHQGQFVFVGSYNA----GNVSVTRL 112 (333)
T ss_dssp ECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEE-C----SSCCSEEEECTTSSEEEEEETTT----TEEEEEEE
T ss_pred EeCCCCEEEEEECCC--CeEEEEEEeCCCCcEEEeeecc-c----CCCceEEEEcCCCCEEeecccCC----Cceeeecc
Confidence 458898887554322 2334566554333333322211 0 11234689999999988765333 24666665
Q ss_pred CCCCccc---ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeE---EecCCCC
Q psy4818 176 DTGKDYP---EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPV---VEFPNGR 249 (734)
Q Consensus 176 ~~g~~~~---~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v---~~~~~~~ 249 (734)
+.+.... .........++.+|||++.++...... ..++.++..+........ ..... .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~-g 176 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ---------------DRICLFTVSDDGHLVAQDPAEVTTVE-G 176 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG---------------TEEEEEEECTTSCEEEEEEEEEECST-T
T ss_pred ccccceecccccCCCccceEEEeeecceeeecccccc---------------ceeeEEEeccCCcceeeeceeeeeec-C
Confidence 5543211 111222235789999999887766422 256666655433211111 11111 1
Q ss_pred eeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee---ccccceE-EEEEecCCeEEEEeCCCC
Q psy4818 250 SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI---PGMDHHH-EIIANNGPELIVKTTKNA 325 (734)
Q Consensus 250 ~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~---~~~~~~~-~~~s~dg~~l~~~s~~~~ 325 (734)
.....+.+++++++++..... . ....+++... ....+........+. ....... ..+++|++.++..... .
T Consensus 177 ~~p~~i~~~~~~~~~~~~~~~-~--~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~-~ 251 (333)
T d1ri6a_ 177 AGPRHMVFHPNEQYAYCVNEL-N--SSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-A 251 (333)
T ss_dssp CCEEEEEECTTSSEEEEEETT-T--TEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-T
T ss_pred CCccEEEEeccceeEEeeccc-c--CceEEEeecc-cccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc-C
Confidence 133468899999998765433 2 3344444433 111110000000000 1111111 2388999877765543 2
Q ss_pred CCceEEEEecCCCCCCCceEeecCCCCceeEEEEE-eeCCEEEEEEEeCCceeEEEEECCCCce
Q psy4818 326 PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAA-VANNKLIVHYIQNVRSVMDLHDLNTGKR 388 (734)
Q Consensus 326 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~dl~~g~~ 388 (734)
....++..+.++... ......+.. .. ...+.+ ++++++++....++.-.+|.+|.++|+.
T Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~-p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 252 SLITVFSVSEDGSVL-SKEGFQPTE-TQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp TEEEEEEECTTSCCE-EEEEEEECS-SS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CeEEEEEEcCCCCEE-EEEEEeCCC-CC-eeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 233455554433220 111112221 11 223334 4545555543333333566668778864
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.45 E-value=5.9e-08 Score=106.21 Aligned_cols=130 Identities=25% Similarity=0.223 Sum_probs=84.9
Q ss_pred EEeEEEEEecccc-CCCCCcEEEEecCCC---CCcCCccccHH----HHHHHHhcCeEEEEEecccCCCCCchhhhccc-
Q psy4818 471 RVPMYIIHRVGAL-RNRRNPVIIYGYGGY---GVSVLPTFSIS----RCMFLRHFNGIYAIPNIRGGGELGEDWHNAGR- 541 (734)
Q Consensus 471 ~i~~~~~~p~~~~-~~~~~P~vv~~hGg~---~~~~~~~~~~~----~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~- 541 (734)
-+..-|+.|.... .+++.||+||+|||. |+.....+... -..+....+.+||.+|||-|- +| |-....
T Consensus 80 CL~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~G--Fl~~~~~ 156 (579)
T d2bcea_ 80 CLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LG--FLSTGDS 156 (579)
T ss_dssp CCEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HH--HCCCSST
T ss_pred CCEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-cc--ccccccc
Confidence 4778888887643 345789999999983 22222222111 012334447999999999642 22 111111
Q ss_pred cccCCCchhHHHHHHHHHHHc---CCCCCCcEEEEEcChHHHHHHHHHhc--CCCceeEEEEcCCcc
Q psy4818 542 LLKKQNCFDDFQAAAEYMINK---KYTKPKYITIMGGSNGGLLVGACLNQ--RPELYGAALILVGAL 603 (734)
Q Consensus 542 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~~~a~v~~~~~~ 603 (734)
...+-.-+.|.+.|++|+.++ ---||++|-|+|+|+||..+..++.. ...+|+.+|+.+|..
T Consensus 157 ~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 157 NLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred CCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 111223588999999999876 12699999999999999999987653 345999999998743
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.45 E-value=5.1e-07 Score=92.53 Aligned_cols=127 Identities=9% Similarity=-0.093 Sum_probs=78.4
Q ss_pred eEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCc
Q psy4818 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ 225 (734)
Q Consensus 146 ~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 225 (734)
..+.+|||+..............+||++|.++++.+.....+. ...++|||||+.|++........ ....+..
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~------~~g~~d~ 96 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARS------AKGKRTD 96 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTT------TSSSEEE
T ss_pred ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccc------cccccCC
Confidence 3567899998655544333333789999999998765433333 25799999999999876422100 0001233
Q ss_pred EEEEEECCCCCCCCeeEEecCCCCe-----eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 226 KIYYHVLGTEQDKDIPVVEFPNGRS-----LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 226 ~l~~~~l~t~~~~~~~v~~~~~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
.|.+++..+..... ....+.... .-..++||||||+|++.... ...++++|+++
T Consensus 97 ~v~v~D~~t~~~~~--~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~---~~~v~~~d~~~ 155 (368)
T d1mdah_ 97 YVEVFDPVTFLPIA--DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---SSAAAGLSVPG 155 (368)
T ss_dssp EEEEECTTTCCEEE--EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS---SSCEEEEEETT
T ss_pred eEEEEECCCCcEee--eecCCccceecccCCccceEECCCCCEEEEEeCC---CCeEEEEECCC
Confidence 58888887764211 111111110 01247899999999876432 25789999988
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=0.00019 Score=71.06 Aligned_cols=238 Identities=9% Similarity=0.044 Sum_probs=128.5
Q ss_pred EeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccc-cccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcE
Q psy4818 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVL-KNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQK 226 (734)
Q Consensus 148 ~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~-~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 226 (734)
.+++||++||-... + ..|++||+.+++.+.... ....+..++|+||+ .|+....+ ..
T Consensus 18 c~~~~~~~l~tgs~-D----g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D----------------~~ 75 (355)
T d1nexb2 18 CLQFEDNYVITGAD-D----KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD----------------RT 75 (355)
T ss_dssp EEEEETTEEEEEET-T----TEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETT----------------CC
T ss_pred EEEECCCEEEEEeC-C----CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecc----------------cc
Confidence 46778998885432 2 479999999998654322 12234688999976 45444332 25
Q ss_pred EEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc--ee------
Q psy4818 227 IYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL--KT------ 298 (734)
Q Consensus 227 l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~------ 298 (734)
|+++++..... .................+++++++++.... ...|.+|++.+............ ..
T Consensus 76 i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d1nexb2 76 VRVWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSR----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 149 (355)
T ss_dssp EEEEETTTTEE--EEEECCCSSCEEEEEEEEETTEEEEEEEET----TSEEEEEECCC-----------CCCEEESCTTT
T ss_pred ccccccccccc--ccccccccccccccccccccccceeeeecC----CCcEEEEEccCCceeccccccceeccceecccc
Confidence 77777765431 112222222333445678899998876442 25788898876321110000000 00
Q ss_pred ------eeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEe
Q psy4818 299 ------VIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQ 372 (734)
Q Consensus 299 ------l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (734)
...........+.++++.++.... +..+..+|+.+.. ........ ........+...+..++....
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----d~~i~~~d~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 221 (355)
T d1nexb2 150 NPYFVGVLRGHMASVRTVSGHGNIVVSGSY----DNTLIVWDVAQMK---CLYILSGH-TDRIYSTIYDHERKRCISASM 221 (355)
T ss_dssp CTTEEEEEECCSSCEEEEEEETTEEEEEET----TSCEEEEETTTTE---EEEEECCC-SSCEEEEEEETTTTEEEEEET
T ss_pred ccceeeeeeeccccccccccccceeeeecc----cceeeeeeccccc---ceeeeecc-ccccccccccccceeeecccc
Confidence 000001112235667776655433 2458888987654 12222222 222333333333445555555
Q ss_pred CCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 373 NVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 373 ~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ ..+++|++.+++.+..+....+.+..+.++ ++ ++++.+.. ..+..+|+
T Consensus 222 d--~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~~~~~d---g~i~iwd~ 270 (355)
T d1nexb2 222 D--TTIRIWDLENGELMYTLQGHTALVGLLRLS--DK-FLVSAAAD---GSIRGWDA 270 (355)
T ss_dssp T--SCEEEEETTTCCEEEEECCCSSCCCEEEEC--SS-EEEEECTT---SEEEEEET
T ss_pred c--ceEEeeeccccccccccccccccccccccc--cc-eeeeeecc---cccccccc
Confidence 5 468899998888877777665556566554 33 34443332 47899998
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.33 E-value=2e-05 Score=78.59 Aligned_cols=61 Identities=11% Similarity=-0.035 Sum_probs=42.4
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-------ccccCeeEEEcCCcEEEEEEEe
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-------NVKFPSISWTHDHKGFFYNQYC 208 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-------~~~~~~~~wSpDg~~l~y~~~~ 208 (734)
..+++|||||++|+.+...+ ..|++||+.+++.+..... .....+++|||||+.++....+
T Consensus 42 p~~l~~spDG~~l~v~~~~~----~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~ 109 (346)
T d1jmxb_ 42 PGTAMMAPDNRTAYVLNNHY----GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109 (346)
T ss_dssp SCEEEECTTSSEEEEEETTT----TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred cceEEECCCCCEEEEEECCC----CcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecC
Confidence 45789999999887654433 3699999999975431110 0123578999999998876543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=0.00014 Score=72.16 Aligned_cols=235 Identities=10% Similarity=0.067 Sum_probs=127.9
Q ss_pred EEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc----------------------cccCeeEEEcCC
Q psy4818 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN----------------------VKFPSISWTHDH 199 (734)
Q Consensus 142 ~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~----------------------~~~~~~~wSpDg 199 (734)
.......++|++++++..... ..|++||+.++..+...... ....-..+.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETT-----SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred ccccccccccccceeeeecCC-----CcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence 344567789999998876642 36899998876532211000 000123456677
Q ss_pred cEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEE
Q psy4818 200 KGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHY 279 (734)
Q Consensus 200 ~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~ 279 (734)
+.++....+ ..|..+++.+.. .+.... ..........++|++++++..... ..|++
T Consensus 172 ~~~~~~~~d----------------~~i~~~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d----~~i~i 227 (355)
T d1nexb2 172 NIVVSGSYD----------------NTLIVWDVAQMK--CLYILS--GHTDRIYSTIYDHERKRCISASMD----TTIRI 227 (355)
T ss_dssp TEEEEEETT----------------SCEEEEETTTTE--EEEEEC--CCSSCEEEEEEETTTTEEEEEETT----SCEEE
T ss_pred ceeeeeccc----------------ceeeeeeccccc--ceeeee--ccccccccccccccceeeeccccc----ceEEe
Confidence 766655432 257778876542 122222 223345678999999998865432 57899
Q ss_pred EeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEE
Q psy4818 280 FDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVA 359 (734)
Q Consensus 280 ~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~ 359 (734)
+++.++. ....+ .+.......+..+++.|+..+. +..|..+|+.+.. ..+..+. ..+.....
T Consensus 228 ~d~~~~~--------~~~~~-~~h~~~v~~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~~~~~~-~~~~~~~~ 289 (355)
T d1nexb2 228 WDLENGE--------LMYTL-QGHTALVGLLRLSDKFLVSAAA----DGSIRGWDANDYS----RKFSYHH-TNLSAITT 289 (355)
T ss_dssp EETTTCC--------EEEEE-CCCSSCCCEEEECSSEEEEECT----TSEEEEEETTTCC----EEEEEEC-TTCCCCCE
T ss_pred eeccccc--------ccccc-ccccccccccccccceeeeeec----ccccccccccccc----eeccccc-CCceEEEE
Confidence 9998731 12222 2222222235556666554332 3469999997654 3333332 22222222
Q ss_pred EeeCCEEEEEEEeCCceeEEEEECCCCceeee-eCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 360 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHS-FPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~-l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+..++.+++... + ..|++||+++|+.++. +..+.+.|.++.++++ .++++.+... --.++.+|.
T Consensus 290 ~~~~~~~l~~g~-d--~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg-~~~l~~~df 354 (355)
T d1nexb2 290 FYVSDNILVSGS-E--NQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDG-QSFLEILDF 354 (355)
T ss_dssp EEECSSEEEEEE-T--TEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSS-CEEEEEEEC
T ss_pred EcCCCCEEEEEe-C--CEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCC-cEEEEEEeC
Confidence 334466666654 4 3799999999987643 3334566777777654 4555544332 123555554
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.25 E-value=1e-06 Score=73.37 Aligned_cols=95 Identities=7% Similarity=-0.070 Sum_probs=64.5
Q ss_pred CCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCC
Q psy4818 467 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ 546 (734)
Q Consensus 467 ~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~ 546 (734)
-+|.+|..... +.-|.||++||... . | .+.|. .+|.|+++|.||.|... ...
T Consensus 8 ~~G~~l~y~~~--------G~G~pvlllHG~~~-~----w----~~~L~-~~yrvi~~DlpG~G~S~----------~p~ 59 (122)
T d2dsta1 8 LYGLNLVFDRV--------GKGPPVLLVAEEAS-R----W----PEALP-EGYAFYLLDLPGYGRTE----------GPR 59 (122)
T ss_dssp ETTEEEEEEEE--------CCSSEEEEESSSGG-G----C----CSCCC-TTSEEEEECCTTSTTCC----------CCC
T ss_pred ECCEEEEEEEE--------cCCCcEEEEecccc-c----c----ccccc-CCeEEEEEeccccCCCC----------Ccc
Confidence 36666655432 45678889998432 1 2 23455 49999999999954321 123
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhcCCC
Q psy4818 547 NCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPE 591 (734)
Q Consensus 547 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~ 591 (734)
...+++.+.+..+++. .+-++..|+|+|+||.++..+++..+.
T Consensus 60 ~s~~~~a~~i~~ll~~--L~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 60 MAPEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred cccchhHHHHHHHHHH--hCCCCcEEEEeCccHHHHHHHHhhccc
Confidence 4567777766666665 344678999999999999999987654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=8.3e-05 Score=73.21 Aligned_cols=248 Identities=12% Similarity=0.020 Sum_probs=126.1
Q ss_pred cEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc---c-ccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE---V-LKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 141 ~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~---~-~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
.-.|..++|||||++||-++. . ..|++||+.++..... . .....+..++|+|++..++++...+
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~-D----g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d------- 78 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSW-D----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ------- 78 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEET-T----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-------
T ss_pred CCCEEEEEEeCCCCEEEEEEC-C----CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc-------
Confidence 345899999999999987653 2 4799999877653211 1 1222346789999887776665422
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
..|+++++...... ..... ..........+.+++..++.... ...+.+||+.++..... ..
T Consensus 79 --------~~v~~w~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~wd~~~~~~~~~----~~ 139 (342)
T d1yfqa_ 79 --------GEILKVDLIGSPSF--QALTN-NEANLGICRICKYGDDKLIAASW----DGLIEVIDPRNYGDGVI----AV 139 (342)
T ss_dssp --------SCEEEECSSSSSSE--EECBS-CCCCSCEEEEEEETTTEEEEEET----TSEEEEECHHHHTTBCE----EE
T ss_pred --------cceeeeeccccccc--ccccc-ccccccccccccccccccccccc----ccccceeecccccccee----ee
Confidence 25778877665322 11111 11112233456667776654332 25678888754211000 00
Q ss_pred eeeec---cccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 297 KTVIP---GMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 297 ~~l~~---~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
..... ........+.+++..++..+.. ..+..+++...........................++..++....+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 215 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMNN----SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp EESCSSSSSSCCCEEEEEECSSEEEEEEST----TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred cccccccccceeeeeeeeccCCceeeecCC----CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCC
Confidence 00000 0011112366777766665543 4588888876542211222222212222222223334455555555
Q ss_pred CceeEEEEECCCCcee------eee---------CCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 374 VRSVMDLHDLNTGKRL------HSF---------PLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~------~~l---------~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+ .+.+++....... ..+ ......+.++.++|+++.++ +.+.. +.+..||+
T Consensus 216 g--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la-sg~~D---g~v~vWD~ 280 (342)
T d1yfqa_ 216 G--RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSD---GIISCWNL 280 (342)
T ss_dssp S--EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEETT---SCEEEEET
T ss_pred C--eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE-EECCC---CEEEEEEC
Confidence 4 3444444221110 000 01133456788889887554 44433 46999999
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.3e-06 Score=84.81 Aligned_cols=92 Identities=11% Similarity=-0.001 Sum_probs=56.0
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHH-HHHHHHHcCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA-AAEYMINKKY 564 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~ 564 (734)
.+.| ||++||++++... |. .++...++.|+.+|.+|-|... .++++.+ .++.+.+.
T Consensus 24 ~~~P-l~l~Hg~~gs~~~--~~----~l~~~L~~~v~~~d~~g~~~~~--------------~~~~~a~~~~~~~~~~-- 80 (286)
T d1xkta_ 24 SERP-LFLVHPIEGSTTV--FH----SLASRLSIPTYGLQCTRAAPLD--------------SIHSLAAYYIDCIRQV-- 80 (286)
T ss_dssp CSCC-EEEECCTTCCCGG--GH----HHHHTCSSCEEEECCCTTSCCS--------------CHHHHHHHHHHHHHHH--
T ss_pred CCCe-EEEECCCCccHHH--HH----HHHHHcCCeEEEEeCCCCCCCC--------------CHHHHHHHHHHHHHHh--
Confidence 3445 6788998877543 32 3444457889999999844321 1233322 22233322
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcC
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~ 600 (734)
...+++.++|||+||.++..++.++|++...++...
T Consensus 81 ~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 81 QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp CCSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 234679999999999999999999999877665544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=0.0022 Score=62.47 Aligned_cols=152 Identities=10% Similarity=0.112 Sum_probs=88.5
Q ss_pred EEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEe
Q psy4818 255 SEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTIN 334 (734)
Q Consensus 255 ~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 334 (734)
..+++||++|+.... ...|++||+..+. ... ...........++++++.|+..+. +..|..++
T Consensus 181 ~~~~~~~~~l~s~~~----dg~i~~~d~~~~~--------~~~-~~~~~~~~v~~~~~~~~~l~s~s~----d~~i~iwd 243 (342)
T d2ovrb2 181 YSLQFDGIHVVSGSL----DTSIRVWDVETGN--------CIH-TLTGHQSLTSGMELKDNILVSGNA----DSTVKIWD 243 (342)
T ss_dssp EEEEECSSEEEEEET----TSCEEEEETTTCC--------EEE-EECCCCSCEEEEEEETTEEEEEET----TSCEEEEE
T ss_pred ccccCCCCEEEEEeC----CCeEEEeecccce--------eee-EecccccceeEEecCCCEEEEEcC----CCEEEEEe
Confidence 467789998874332 2579999998721 112 222222333347778886665443 34588999
Q ss_pred cCCCCCCCceEeecCCC-CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-----CceEEeeccCccc
Q psy4818 335 LNNPCEKNWKTLIPEDE-NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-----LGQITHISGRRKY 408 (734)
Q Consensus 335 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-----~g~v~~~~~~~d~ 408 (734)
+..... ...+..... ...+..+. .+ +.++++...+ ..|++||+.+|+.++.+... .+.|..+.+++++
T Consensus 244 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~-~~~~~s~s~D--g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~ 317 (342)
T d2ovrb2 244 IKTGQC--LQTLQGPNKHQSAVTCLQ-FN-KNFVITSSDD--GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317 (342)
T ss_dssp TTTCCE--EEEECSTTSCSSCEEEEE-EC-SSEEEEEETT--SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred cccccc--cccccccceeeeceeecc-cC-CCeeEEEcCC--CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC
Confidence 876541 222222221 12222332 33 4456666666 47999999999887766421 3457788888876
Q ss_pred ceEEEEEecCCCCceEEEEeC
Q psy4818 409 NEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 409 ~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..++....+-+.-..++++|+
T Consensus 318 ~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 318 LVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp EEEEEECSSSSSCCEEEEEEC
T ss_pred CEEEEEeCCCCCeeEEEEEeC
Confidence 544433333334456888887
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=3.4e-06 Score=80.79 Aligned_cols=109 Identities=11% Similarity=-0.064 Sum_probs=60.9
Q ss_pred CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhc--CeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHH
Q psy4818 484 RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561 (734)
Q Consensus 484 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 561 (734)
|..+.|+ |++||-.++...+.-...+..++.++ |+.|.++++..+.. .....+. ...+++.+..+...++
T Consensus 2 p~~P~PV-VLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~---~~~~~~~----~~~~~~~~e~v~~~I~ 73 (279)
T d1ei9a_ 2 PPAPLPL-VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR---EDVENSF----FLNVNSQVTTVCQILA 73 (279)
T ss_dssp TTSSCCE-EEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH---HHHHHHH----HSCHHHHHHHHHHHHH
T ss_pred cCCCCcE-EEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc---cccccch----hhhHHHHHHHHHHHHH
Confidence 3445665 56699655443332223345666555 88899888643111 1011111 1123444444333333
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHhcCCC-ceeEEEEcC
Q psy4818 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPE-LYGAALILV 600 (734)
Q Consensus 562 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-~~~a~v~~~ 600 (734)
+-..-.+++-++|||+||+++-+++.+.++ .....|+..
T Consensus 74 ~~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLg 113 (279)
T d1ei9a_ 74 KDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVG 113 (279)
T ss_dssp SCGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEES
T ss_pred hccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEEC
Confidence 322234589999999999999999988775 345555543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.15 E-value=6.3e-06 Score=82.06 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=60.4
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC-------CceEE
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG-------SDWNT 169 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g-------~~~~~ 169 (734)
+|||.++|-.-... ..|++.+...++...-++..... ........+++||||++++....... .....
T Consensus 42 spDg~~l~v~~~~~----~~v~v~D~~t~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T d1pbyb_ 42 APGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPE-ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp CTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTT-EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred CCCCCEEEEEECCC----CeEEEEECCCCcEEEEEecCCCc-ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence 36777766543222 23555565555543333322110 01122346899999999987754211 11247
Q ss_pred EEEEECCCCCcccccccccccCeeEEEcCCcEEEEE
Q psy4818 170 LHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYN 205 (734)
Q Consensus 170 l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~ 205 (734)
+.++|..+++.+...........++|||||+.++..
T Consensus 117 ~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T d1pbyb_ 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp EEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred eeeccccCCeEEEeccccCCceEEEEcCCCCEEEEE
Confidence 889999998865433333334688999999988764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.14 E-value=1.2e-05 Score=82.52 Aligned_cols=105 Identities=11% Similarity=-0.009 Sum_probs=61.6
Q ss_pred CcEEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCC--------C--
Q psy4818 95 APQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKS--------G-- 164 (734)
Q Consensus 95 ~p~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~--------g-- 164 (734)
...+||.|+|-.- .. . ..+-+.+....+...++....- ....+.++||||+++....... |
T Consensus 78 ~gtpDGr~lfV~d-~~-~--~rVavIDl~t~k~~~ii~iP~g-----~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 78 DGRYDGKYLFIND-KA-N--TRVARIRLDIMKTDKITHIPNV-----QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp TTEEEEEEEEEEE-TT-T--TEEEEEETTTTEEEEEEECTTC-----CCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred cccCCCCEEEEEc-CC-C--CEEEEEECCCCcEeeEEecCCC-----CCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 3458887776433 33 1 3466777666655545542211 2366899999999644332111 0
Q ss_pred ----CceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEe
Q psy4818 165 ----SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYC 208 (734)
Q Consensus 165 ----~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~ 208 (734)
.....+..+|.++.+......-+.....+.++|||+++|.+..+
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence 11234567888887754322222234689999999998877754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=0.0022 Score=62.72 Aligned_cols=197 Identities=10% Similarity=0.075 Sum_probs=109.3
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
..++|+||++.|+-...|. .|.+|++.++. .+..+.. +...+..++|+|||++++.....
T Consensus 59 ~~l~~s~~~~~l~sgs~Dg----------------~v~iWd~~~~~--~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~d 118 (340)
T d1tbga_ 59 YAMHWGTDSRLLVSASQDG----------------KLIIWDSYTTN--KVHAIPL--RSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp EEEEECTTSSEEEEEETTT----------------EEEEEETTTTE--EEEEEEC--SCSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEECCCCCEEEEEECCC----------------ceeeeecccce--eEEEEec--ccccEEeeEeeccceeeeeeccc
Confidence 5789999999887665432 68999987753 2222332 33356789999999998865432
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCC
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED 350 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 350 (734)
..+.+++........ .....+..............+..+...... ............ ........
T Consensus 119 ----~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~ 183 (340)
T d1tbga_ 119 ----NICSIYNLKTREGNV----RVSRELAGHTGYLSCCRFLDDNQIVTSSGD----TTCALWDIETGQ---QTTTFTGH 183 (340)
T ss_dssp ----CCEEEEESSSSCSCC----CEEEEECCCSSCEEEEEEEETTEEEEEETT----TEEEEEETTTTE---EEEEEECC
T ss_pred ----ceeeccccccccccc----ccceeccccccccccccccccccccccccc----cccccccccccc---cccccccc
Confidence 457777765521100 011111111111112233333434333322 223344443322 11122222
Q ss_pred CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 351 ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
...+..........++++...+ ..+.+||+.+++.+..+....+.|.++.++|+++.++.. +.. ..+..+|+
T Consensus 184 -~~~~~~~~~~~~~~~~~~~~~d--~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d---~~i~~~~~ 255 (340)
T d1tbga_ 184 -TGDVMSLSLAPDTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDD---ATCRLFDL 255 (340)
T ss_dssp -SSCEEEEEECTTSSEEEEEETT--TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETT---SCEEEEET
T ss_pred -ceeEeeeccccccceeEEeecC--ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCC---CeEEEEee
Confidence 2223333333335566666555 478899998898877887666778888889988765543 332 36888888
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.00 E-value=0.00078 Score=67.87 Aligned_cols=169 Identities=8% Similarity=-0.001 Sum_probs=83.2
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
.+.+++||||++|.-+ .. + ....+.++.+++..... ...+.....+..+||++.++.......
T Consensus 42 ~s~la~s~d~~~ly~~-~~-~--~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~------------ 105 (365)
T d1jofa_ 42 ISWMTFDHERKNIYGA-AM-K--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQP------------ 105 (365)
T ss_dssp CSEEEECTTSSEEEEE-EB-T--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSST------------
T ss_pred CCEEEEcCCCCEEEEE-eC-C--cEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCC------------
Confidence 3568999999987544 32 2 24566666555432111 111112246778999998776654221
Q ss_pred CCcEEEEEECCC------------CCC-CC-eeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCC
Q psy4818 223 MGQKIYYHVLGT------------EQD-KD-IPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG 288 (734)
Q Consensus 223 ~~~~l~~~~l~t------------~~~-~~-~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~ 288 (734)
...++...+.. ... .. ....+... .....++.+||||++|+... . ....|++++... ..
T Consensus 106 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~h~h~v~~sPdG~~l~v~d-~--g~d~v~~~~~~~--~g 178 (365)
T d1jofa_ 106 -PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE-NTGIHGMVFDPTETYLYSAD-L--TANKLWTHRKLA--SG 178 (365)
T ss_dssp -TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEE-T--TTTEEEEEEECT--TS
T ss_pred -CCEEEEeEccCCCCcceeEeeeecceecCcccCcccCC-CCcceEEEECCCCCEEEEee-C--CCCEEEEEEccC--CC
Confidence 11232222111 000 00 00011111 12456789999999998653 2 225788877554 11
Q ss_pred cccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCC
Q psy4818 289 KISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNP 338 (734)
Q Consensus 289 ~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 338 (734)
.+...........+.....-.++|||+.+|+.... ...|.++++++.
T Consensus 179 ~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~---~~~V~v~~~~~~ 225 (365)
T d1jofa_ 179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA---GNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEEECTT
T ss_pred ceeeccceeecCCCCceEEEEECCCCceEEEeccC---CCEEEEEEecCC
Confidence 11100000000111222223489999988776544 235777776554
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.82 E-value=1.8e-05 Score=76.01 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=61.7
Q ss_pred CCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHH-HHHHHHcCC
Q psy4818 486 RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA-AEYMINKKY 564 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~ 564 (734)
+..|.|+++||.........|.. ++..|.. .+.|+.++.+|.+. + +....+++++.+. ++.+.+.
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~-La~~L~~-~~~V~al~~pG~~~-~---------e~~~~s~~~~a~~~~~~i~~~-- 105 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTR-LAGALRG-IAPVRAVPQPGYEE-G---------EPLPSSMAAVAAVQADAVIRT-- 105 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHH-HHHHHTT-TCCEEEECCTTSST-T---------CCEESSHHHHHHHHHHHHHHT--
T ss_pred CCCCeEEEECCCCCCCCHHHHHH-HHHhcCC-CceEEEEeCCCcCC-C---------CCCCCCHHHHHHHHHHHHHHh--
Confidence 45788999998543333334543 4556654 68999999998331 1 1112346666553 4444443
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcC---CCceeEEEEc
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQR---PELYGAALIL 599 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~---p~~~~a~v~~ 599 (734)
.....+.|+|||+||.++..++.+. .+....+|+.
T Consensus 106 ~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvll 143 (255)
T d1mo2a_ 106 QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLI 143 (255)
T ss_dssp TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEE
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEE
Confidence 2335699999999999999988653 3334555543
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.82 E-value=1e-05 Score=79.34 Aligned_cols=113 Identities=9% Similarity=-0.036 Sum_probs=73.6
Q ss_pred CCCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcC
Q psy4818 484 RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKK 563 (734)
Q Consensus 484 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 563 (734)
.+...|+++++||.-+.............+|.+.++.|+++|.+.+... .+..+.. .-...-+.+...+++|.++.
T Consensus 66 f~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~~--n~~~Vg~~ia~~i~~l~~~~ 141 (337)
T d1rp1a2 66 FQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAAN--NVRVVGAQVAQMLSMLSANY 141 (337)
T ss_dssp CCTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999765554433333344677766799999999764321 1222211 11111244555677777766
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCC
Q psy4818 564 YTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601 (734)
Q Consensus 564 ~~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~ 601 (734)
.+++++|.|+|||.|+.+++.+..+. .....++..-|
T Consensus 142 g~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDP 178 (337)
T d1rp1a2 142 SYSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDP 178 (337)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESC
T ss_pred CCChhheEEEeecHHHhhhHHHHHhh-ccccceeccCC
Confidence 68999999999999999999887754 34566665544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.80 E-value=4.5e-05 Score=78.22 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=74.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc-------ccccccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV-------LKNVKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~-------~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
+..++||||| +|| +.. ....|++||+.+++.+... .....+..++|||||+.|+....+..
T Consensus 187 ~~~v~~s~dg-~la-sgs----~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t------ 254 (393)
T d1sq9a_ 187 ATSVDISERG-LIA-TGF----NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------ 254 (393)
T ss_dssp CCEEEECTTS-EEE-EEC----TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------
T ss_pred EEEEEECCCC-EEE-EEe----CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC------
Confidence 4568899999 454 322 2357999999998753211 11112367899999999888776531
Q ss_pred CcccccCCcEEEEEECCCCCCCCee---------EEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCC
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIP---------VVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSL 285 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~---------v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~ 285 (734)
...|.+|++.++.....+ ......+...+..++|||||++|+- . +....|.+||+++|
T Consensus 255 -------~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S-~---s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 255 -------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-A---GWDGKLRFWDVKTK 321 (393)
T ss_dssp -------EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE-E---ETTSEEEEEETTTT
T ss_pred -------cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE-E---CCCCEEEEEECCCC
Confidence 224677777765321100 0000123346788999999999862 2 22368999999883
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.0079 Score=56.77 Aligned_cols=226 Identities=11% Similarity=0.079 Sum_probs=117.0
Q ss_pred EeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEE
Q psy4818 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 227 (734)
Q Consensus 148 ~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l 227 (734)
++++||++||-... ...|++||+.+++.+....+... .-.+.++|++.|+-...+. .|
T Consensus 20 c~~~d~~~l~sgs~-----Dg~i~vWd~~~~~~~~~l~~H~~-~V~~v~~~~~~l~s~s~D~----------------~i 77 (293)
T d1p22a2 20 CLQYDDQKIVSGLR-----DNTIKIWDKNTLECKRILTGHTG-SVLCLQYDERVIITGSSDS----------------TV 77 (293)
T ss_dssp EEECCSSEEEEEES-----SSCEEEEESSSCCEEEEECCCSS-CEEEEECCSSEEEEEETTS----------------CE
T ss_pred EEEEcCCEEEEEeC-----CCeEEEEECCCCcEEEEEecCCC-CEeeeecccceeecccccc----------------cc
Confidence 47889999885443 24699999999986543222111 2234566888776555332 57
Q ss_pred EEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceE
Q psy4818 228 YYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH 307 (734)
Q Consensus 228 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~ 307 (734)
.++++..+... ...... .. ....+.+....++.... ...+.+++..+.... .............
T Consensus 78 ~~~~~~~~~~~--~~~~~~-~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~v 141 (293)
T d1p22a2 78 RVWDVNTGEML--NTLIHH-CE---AVLHLRFNNGMMVTCSK----DRSIAVWDMASPTDI------TLRRVLVGHRAAV 141 (293)
T ss_dssp EEEESSSCCEE--EEECCC-CS---CEEEEECCTTEEEEEET----TSCEEEEECSSSSCC------EEEEEECCCSSCE
T ss_pred ccccccccccc--cccccc-cc---ccccccccccceeeccc----ccceeEeeccccccc------ccccccccccccc
Confidence 78887765321 111111 11 12345555555554322 245677787662110 0111111112222
Q ss_pred EEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCc
Q psy4818 308 EIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGK 387 (734)
Q Consensus 308 ~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~ 387 (734)
.........++..+. +..+..+++.+.+ ....+... ...+..+.+ ++.. +++...+ ..+++||+.+++
T Consensus 142 ~~~~~~~~~~~~~s~----d~~i~~~d~~~~~---~~~~~~~~-~~~v~~~~~-~~~~-l~~~~~d--g~i~i~d~~~~~ 209 (293)
T d1p22a2 142 NVVDFDDKYIVSASG----DRTIKVWNTSTCE---FVRTLNGH-KRGIACLQY-RDRL-VVSGSSD--NTIRLWDIECGA 209 (293)
T ss_dssp EEEEEETTEEEEEET----TSEEEEEETTTCC---EEEEEECC-SSCEEEEEE-ETTE-EEEEETT--SCEEEEETTTCC
T ss_pred ccceecccccccccC----CCceeeecCCCCc---EEEEEccc-ccccccccC-CCCe-EEEecCC--CEEEEEecccce
Confidence 234445555554443 3468889987664 22223332 223333333 3344 4445455 368899998887
Q ss_pred eeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 388 RLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 388 ~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+.........+..+. .+...+ ++.+.. ..+.++|+
T Consensus 210 ~~~~~~~~~~~v~~~~--~~~~~l-~sg~~d---g~i~iwd~ 245 (293)
T d1p22a2 210 CLRVLEGHEELVRCIR--FDNKRI-VSGAYD---GKIKVWDL 245 (293)
T ss_dssp EEEEECCCSSCEEEEE--CCSSEE-EEEETT---SCEEEEEH
T ss_pred eeeeecccceeeeecc--ccceEE-EEEcCC---CEEEEEEC
Confidence 7666655444443433 344433 343332 46888887
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.72 E-value=0.013 Score=51.41 Aligned_cols=269 Identities=13% Similarity=0.094 Sum_probs=146.1
Q ss_pred EeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeC-CCCceEEEEEEECC
Q psy4818 98 RQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSK-SGSDWNTLHIKDVD 176 (734)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~-~g~~~~~l~v~dl~ 176 (734)
.+++-+.|+....+. -.+|... +++ .+.+.-.-++ .....-+.=.+|.|..|. .|.|...||..+++
T Consensus 23 l~~d~ll~~~~seG~--vni~~l~--g~~-~vkLtkePI~-------~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk 90 (313)
T d2hu7a1 23 VDGDKLLVVGFSEGS--VNAYLYD--GGE-TVKLNREPIN-------SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTS 90 (313)
T ss_dssp ETTTEEEEEEEETTE--EEEEEES--SSS-CEECCSSCCS-------EECEECTTBSEEEEEEECSTTSCCEEEEEEETT
T ss_pred ecCCcEEEEEeccce--EEEEEEe--CCE-EEEEeccccc-------CcCCCccCcceEEEEeehhcCcceeeEEEEccC
Confidence 456666666654433 2344433 333 3333322221 223444445678888875 68889999999998
Q ss_pred -CCCccc-ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEE
Q psy4818 177 -TGKDYP-EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLH 254 (734)
Q Consensus 177 -~g~~~~-~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~ 254 (734)
.|+..+ ......+..+.+. |++.++|+...+ ....+|..+ .+.- ..+...|. -.|+
T Consensus 91 ~~GEE~~i~spk~vRI~S~~y--ddk~vvF~Gase-------------d~~~LYvie--gGkl--rkL~~vPp-FsFV-- 148 (313)
T d2hu7a1 91 RPGEEQRLEAVKPMRILSGVD--TGEAVVFTGATE-------------DRVALYALD--GGGL--RELARLPG-FGFV-- 148 (313)
T ss_dssp STTCEEECTTSCSBEEEEEEE--CSSCEEEEEECS-------------SCEEEEEEE--TTEE--EEEEEESS-CEEE--
T ss_pred CCCeeeEecCCceEEEEEeee--cCceEEEecccC-------------CceEEEEEe--CCce--eeeccCCC-cceE--
Confidence 244332 2333355445544 899999998643 123455554 3321 12223321 1122
Q ss_pred EEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE--EEEecCCeEEEEeCC-CCCCceEE
Q psy4818 255 SEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE--IIANNGPELIVKTTK-NAPKGKVV 331 (734)
Q Consensus 255 ~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~-~~~~~~l~ 331 (734)
-.=.|++|+=..--......+++.|+.+| .++.++. .+.... +.+++.+ + .++- +.....+.
T Consensus 149 --tDI~~d~I~G~g~~~g~~~sfF~adl~SG---------~lri~tp-keGS~~~ay~~~gnK-V--~sdyEt~gEsywi 213 (313)
T d2hu7a1 149 --SDIRGDLIAGLGFFGGGRVSLFTSNLSSG---------GLRVFDS-GEGSFSSASISPGMK-V--TAGLETAREARLV 213 (313)
T ss_dssp --EEEETTEEEEEEEEETTEEEEEEEETTTE---------EEEEECC-SSEEEEEEEECTTSC-E--EEEEEESSCEEEE
T ss_pred --EeccCCeEEEEeeecCCcceEEEEecccC---------CEEEecC-CCCcccceeEccCce-e--eeccCCCCceEEE
Confidence 22246777633322233345888898663 2333333 232222 3555444 4 2221 12223355
Q ss_pred EEecCCCCCCCceEe-ecCCC-----CceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccC
Q psy4818 332 TINLNNPCEKNWKTL-IPEDE-----NRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGR 405 (734)
Q Consensus 332 ~~d~~~~~~~~~~~l-~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~ 405 (734)
.+|+.++. ...+ +|+.+ ...+.|.....++++++.+.++|.+.|+ + +|+. +..|.|.+.....
T Consensus 214 t~D~~s~~---yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF---~-nGk~---in~p~G~~~gat~- 282 (313)
T d2hu7a1 214 TVDPRDGS---VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF---I-DGER---VEAPQGNHGRVVL- 282 (313)
T ss_dssp EECTTTCC---EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE---E-TTEE---ECCCSSEEEEEEE-
T ss_pred EEecccCc---eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchhee---e-cceE---ecCCCCcccceEE-
Confidence 77887654 3332 23332 2334455455568898889999988776 2 6865 5556777765543
Q ss_pred cccceEEEEEecCCCCceEEEE
Q psy4818 406 RKYNEVFYGFTSFLQPGTIYHC 427 (734)
Q Consensus 406 ~d~~~l~~~~ss~~~P~~~~~~ 427 (734)
-+++++++++|..+|..+..+
T Consensus 283 -i~~~iyfshsSL~tP~kI~~~ 303 (313)
T d2hu7a1 283 -WRGKLVTSHTSLSTPPRIVSL 303 (313)
T ss_dssp -ETTEEEEEEEETTEEEEEEEE
T ss_pred -ECCEEEEeecccCCCceeEEc
Confidence 256899999999999987764
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.019 Score=54.35 Aligned_cols=218 Identities=10% Similarity=0.008 Sum_probs=119.5
Q ss_pred EEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC--CCeeEEecC
Q psy4818 169 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD--KDIPVVEFP 246 (734)
Q Consensus 169 ~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~--~~~~v~~~~ 246 (734)
.|+.+++++..............++.|.+..+.||++... ...|++.++..... ....+....
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~---------------~~~I~~~~l~~~~~~~~~~~~~~~~ 75 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------------QRMICSTQLDRAHGVSSYDTVISRD 75 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT---------------TTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECC---------------CCEEEEEEecCCCCCcceEEEEeCC
Confidence 4888899877643322121123568888889999886421 23688877754221 112222211
Q ss_pred CCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc-ccceEE-EEEecCCeEEEEeCCC
Q psy4818 247 NGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG-MDHHHE-IIANNGPELIVKTTKN 324 (734)
Q Consensus 247 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~ 324 (734)
.....++++.+-++.|+++.. ....|.++++++. ....+... ...-.. .+.|....+|+...
T Consensus 76 --~~~p~glAvD~~~~~lY~~d~---~~~~I~v~~~~g~---------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~-- 139 (266)
T d1ijqa1 76 --IQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDW-- 139 (266)
T ss_dssp --CSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEEC--
T ss_pred --CCCcceEEEeeccceEEEEec---CCCEEEeEecCCc---------eEEEEEcCCCCCcceEEEEcccCeEEEecc--
Confidence 112236788888999887542 3368999999872 11222221 121122 26676777777642
Q ss_pred CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECCCCceeeee-CCCC--ceEE
Q psy4818 325 APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF-PLDL--GQIT 400 (734)
Q Consensus 325 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l-~~~~--g~v~ 400 (734)
+...+|+++++++.. .+.++... -....++.+. .+++||++- .....|...++ +|...+.+ .... ....
T Consensus 140 ~~~~~I~r~~~dGs~---~~~l~~~~-~~~p~gl~iD~~~~~lYw~d--~~~~~I~~~~~-dG~~~~~~~~~~~~~~~p~ 212 (266)
T d1ijqa1 140 GTPAKIKKGGLNGVD---IYSLVTEN-IQWPNGITLDLLSGRLYWVD--SKLHSISSIDV-NGGNRKTILEDEKRLAHPF 212 (266)
T ss_dssp SSSCEEEEEETTSCC---EEEEECSS-CSCEEEEEEETTTTEEEEEE--TTTTEEEEEET-TSCSCEEEEECTTTTSSEE
T ss_pred CCCcceeEeccCCCc---eecccccc-cceeeEEEeeccccEEEEec--CCcCEEEEEEC-CCCCEEEEEeCCCcccccE
Confidence 234679999998765 35555443 2333455444 347888874 33468999999 56533333 2211 1222
Q ss_pred eeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 401 HISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 401 ~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+++. +++.++++-. ....+++++.
T Consensus 213 ~lav--~~~~ly~td~---~~~~I~~~~~ 236 (266)
T d1ijqa1 213 SLAV--FEDKVFWTDI---INEAIFSANR 236 (266)
T ss_dssp EEEE--ETTEEEEEET---TTTEEEEEET
T ss_pred EEEE--ECCEEEEEEC---CCCeEEEEEC
Confidence 3443 3556766432 2457899887
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.70 E-value=2e-05 Score=77.01 Aligned_cols=114 Identities=11% Similarity=-0.010 Sum_probs=75.4
Q ss_pred CCCCcEEEEecCCCCCcCCccccHHHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHHHHHHcCC
Q psy4818 485 NRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKY 564 (734)
Q Consensus 485 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 564 (734)
+...|+++++||.-+.............+|.+..+.|+++|...+... .+..+.. +-...-+.+...+++|..+..
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~--n~~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASY--NTRVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHH--hHHHHHHHHHHHHHHHHHhcC
Confidence 567899999999755544433333345677766799999999764322 2222211 101111233445666666656
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhcCCCceeEEEEcCCc
Q psy4818 565 TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602 (734)
Q Consensus 565 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~~~a~v~~~~~ 602 (734)
+++++|.++|||.|+.+++.+..+-+.....++..-|.
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA 180 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccC
Confidence 89999999999999999999988776666777765553
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=0.00047 Score=70.25 Aligned_cols=148 Identities=8% Similarity=0.112 Sum_probs=83.1
Q ss_pred eEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEE-EEecCCeEEEEeCCCCCCce
Q psy4818 251 LGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEI-IANNGPELIVKTTKNAPKGK 329 (734)
Q Consensus 251 ~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~ 329 (734)
+...++||||| +|+ +.+ ....|.+||+.++.. +..-.....+..+....... |+|||+.|+..++. .....
T Consensus 186 ~~~~v~~s~dg-~la-sgs---~Dg~i~iwd~~~~~~--~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D-~t~~~ 257 (393)
T d1sq9a_ 186 FATSVDISERG-LIA-TGF---NNGTVQISELSTLRP--LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-NSFGC 257 (393)
T ss_dssp CCCEEEECTTS-EEE-EEC---TTSEEEEEETTTTEE--EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-TTEEE
T ss_pred cEEEEEECCCC-EEE-EEe---CCCcEEEEeeccccc--ccccccccccccccceEEEcccccccceeeeecCC-CCcce
Confidence 45578999998 443 332 236799999987321 10000001112222233333 99999988766543 22345
Q ss_pred EEEEecCCCCCCCceEeecC-----------CCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCce
Q psy4818 330 VVTINLNNPCEKNWKTLIPE-----------DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQ 398 (734)
Q Consensus 330 l~~~d~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~ 398 (734)
+..+|++++.. ...+... .....+..+.+..++.++++...| ..|++||+++|+.+..+..+...
T Consensus 258 i~lwd~~~g~~--~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D--~~v~vWd~~~g~~~~~l~gH~~~ 333 (393)
T d1sq9a_ 258 ITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--GKLRFWDVKTKERITTLNMHCDD 333 (393)
T ss_dssp EEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT--SEEEEEETTTTEEEEEEECCGGG
T ss_pred eeeccccccee--eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC--CEEEEEECCCCCEEEEECCcCCc
Confidence 77788876541 1222110 112334556665556777887776 58999999999988888765433
Q ss_pred EE----eeccCcccce
Q psy4818 399 IT----HISGRRKYNE 410 (734)
Q Consensus 399 v~----~~~~~~d~~~ 410 (734)
|. .+.+++++..
T Consensus 334 v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 334 IEIEEDILAVDEHGDS 349 (393)
T ss_dssp CSSGGGCCCBCTTSCB
T ss_pred ccCCccEEEECCCCCE
Confidence 32 2445566543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.62 E-value=0.00091 Score=67.34 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=64.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC-CCCccc-----ccccccccCeeEEEcCCcEEEEEEEecCCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD-TGKDYP-----EVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGT 217 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~-~g~~~~-----~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~ 217 (734)
+.++.|||||++|+.. +. |.+ .|++++.. +|.... ....+.....++|+|||+.+|.+...
T Consensus 147 ~h~v~~sPdG~~l~v~-d~-g~d--~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~--------- 213 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSA-DL-TAN--KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--------- 213 (365)
T ss_dssp EEEEEECTTSSEEEEE-ET-TTT--EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT---------
T ss_pred ceEEEECCCCCEEEEe-eC-CCC--EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC---------
Confidence 5689999999998654 43 332 46666543 333211 11112223568999999866554421
Q ss_pred cccccCCcEEEEEECCCCCCCCeeEEe-c--------------CCCCeeEEEEEEecCCcEEEEEEecCCCC--ceEEEE
Q psy4818 218 ETTAHMGQKIYYHVLGTEQDKDIPVVE-F--------------PNGRSLGLHSEVTDCGRYLLVSTSNNTQG--SDLHYF 280 (734)
Q Consensus 218 ~~~~~~~~~l~~~~l~t~~~~~~~v~~-~--------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~--~~i~~~ 280 (734)
..+|..+++++.....+.... . .........+.+||||++|+......... ..|..+
T Consensus 214 ------~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~ 287 (365)
T d1jofa_ 214 ------GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF 287 (365)
T ss_dssp ------TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred ------CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEE
Confidence 235666666544321111000 0 00112345678999999987654321111 346556
Q ss_pred eCCC
Q psy4818 281 DLHS 284 (734)
Q Consensus 281 d~~~ 284 (734)
++..
T Consensus 288 ~~~~ 291 (365)
T d1jofa_ 288 KLRD 291 (365)
T ss_dssp EECT
T ss_pred EecC
Confidence 6544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.0069 Score=58.76 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=112.3
Q ss_pred EeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcE
Q psy4818 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQK 226 (734)
Q Consensus 148 ~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 226 (734)
.+++||++||-.. .. ..|++||+.+|+.+..... ...+..+.|+|+ .|+-...+. .
T Consensus 22 ~~~~~g~~l~sgs-~D----g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~----------------~ 78 (342)
T d2ovrb2 22 CLQFCGNRIVSGS-DD----NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR----------------T 78 (342)
T ss_dssp EEEEETTEEEEEE-TT----SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS----------------C
T ss_pred EEEECCCEEEEEe-CC----CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc----------------c
Confidence 4788999987443 22 4699999999986542221 122357889875 444333221 4
Q ss_pred EEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccce
Q psy4818 227 IYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHH 306 (734)
Q Consensus 227 l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~ 306 (734)
+..++...... ............ .....+..+.... ....+.+++..++. ...........
T Consensus 79 ~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~----~d~~i~~~~~~~~~---------~~~~~~~~~~~ 139 (342)
T d2ovrb2 79 LKVWNAETGEC----IHTLYGHTSTVR--CMHLHEKRVVSGS----RDATLRVWDIETGQ---------CLHVLMGHVAA 139 (342)
T ss_dssp EEEEETTTTEE----EEEECCCSSCEE--EEEEETTEEEEEE----TTSEEEEEESSSCC---------EEEEEECCSSC
T ss_pred ccccccccccc----eecccccceeEe--eeecccccccccc----cceeEEEeeccccc---------ceeeeeccccc
Confidence 55566554321 111111111111 1222333333222 12568888887721 11111112222
Q ss_pred EEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCC
Q psy4818 307 HEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTG 386 (734)
Q Consensus 307 ~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g 386 (734)
..........++..+. ...+..+++.... ....+... ....... ..+ +..+++...+ ..|++||+.++
T Consensus 140 ~~~~~~~~~~~~~~~~----d~~i~~~d~~~~~---~~~~~~~~-~~~~~~~-~~~-~~~l~s~~~d--g~i~~~d~~~~ 207 (342)
T d2ovrb2 140 VRCVQYDGRRVVSGAY----DFMVKVWDPETET---CLHTLQGH-TNRVYSL-QFD-GIHVVSGSLD--TSIRVWDVETG 207 (342)
T ss_dssp EEEEEECSSCEEEEET----TSCEEEEEGGGTE---EEEEECCC-SSCEEEE-EEC-SSEEEEEETT--SCEEEEETTTC
T ss_pred ceeeccccceeeeecC----CCeEEEeecccce---eeEEEcCc-ccccccc-cCC-CCEEEEEeCC--CeEEEeecccc
Confidence 2234455555554443 2357788876543 12222222 1222222 234 4455555555 46899999888
Q ss_pred ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 387 KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 387 ~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+.++.+......+..++++ ++ ++++.+.. ..++.+|+
T Consensus 208 ~~~~~~~~~~~~v~~~~~~--~~-~l~s~s~d---~~i~iwd~ 244 (342)
T d2ovrb2 208 NCIHTLTGHQSLTSGMELK--DN-ILVSGNAD---STVKIWDI 244 (342)
T ss_dssp CEEEEECCCCSCEEEEEEE--TT-EEEEEETT---SCEEEEET
T ss_pred eeeeEecccccceeEEecC--CC-EEEEEcCC---CEEEEEec
Confidence 8777776665556566544 44 34444432 46889998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=0.012 Score=56.73 Aligned_cols=276 Identities=10% Similarity=0.041 Sum_probs=132.5
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECC
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~ 176 (734)
.|+|.+++-...+ ..-.+|-........+++... ++...+..++|+|++..+.++....| .|++|++.
T Consensus 20 sp~~~~L~s~s~D---g~v~iwd~~~~~~~~~~~~~~-----~h~~~V~~v~f~~~~~~~l~sg~~d~----~v~~w~~~ 87 (342)
T d1yfqa_ 20 IPSKSLLLITSWD---GSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTVQG----EILKVDLI 87 (342)
T ss_dssp EGGGTEEEEEETT---SEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEETTS----CEEEECSS
T ss_pred eCCCCEEEEEECC---CeEEEEEccCCCcceEEEEec-----CCCCCEEEEEEeCCCCCEEEEccccc----ceeeeecc
Confidence 3677776654322 334566544322222222111 12234788999998876666655444 59999998
Q ss_pred CCCcccccccc--cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCC--CeeE
Q psy4818 177 TGKDYPEVLKN--VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG--RSLG 252 (734)
Q Consensus 177 ~g~~~~~~~~~--~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~--~~~~ 252 (734)
++......... .......+.+++..++....+. .+.++++.+.............. ....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T d1yfqa_ 88 GSPSFQALTNNEANLGICRICKYGDDKLIAASWDG----------------LIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151 (342)
T ss_dssp SSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS----------------EEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred ccccccccccccccccccccccccccccccccccc----------------ccceeeccccccceeeeccccccccccee
Confidence 77643322111 1112345566766666555322 56666654433222222221110 1112
Q ss_pred EEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEE-ecCCeEEEEeCCCCCCceE
Q psy4818 253 LHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIA-NNGPELIVKTTKNAPKGKV 330 (734)
Q Consensus 253 ~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l 330 (734)
....+++++..++.... ...|.+|++.+..... .............. .+. .++..++..+. + +++
T Consensus 152 ~~~~~~~~~~~~~~~~~----d~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d---g~~ 218 (342)
T d1yfqa_ 152 KIFTMDTNSSRLIVGMN----NSQVQWFRLPLCEDDN-----GTIEESGLKYQIRDVALLPKEQEGYACSSI-D---GRV 218 (342)
T ss_dssp CEEEEEECSSEEEEEES----TTEEEEEESSCCTTCC-----CEEEECSCSSCEEEEEECSGGGCEEEEEET-T---SEE
T ss_pred eeeeeeccCCceeeecC----CCcEEEEecccCcccc-----eeeeecccccceeeeEeecCCCCEEEeecC-C---CeE
Confidence 23567788888775432 2578899987632110 00111111111111 122 33333333332 2 234
Q ss_pred EEEecCCCCC----CCceEeec------CC-CCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCC-Cce
Q psy4818 331 VTINLNNPCE----KNWKTLIP------ED-ENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQ 398 (734)
Q Consensus 331 ~~~d~~~~~~----~~~~~l~~------~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~-~g~ 398 (734)
..++...... .....+.. .. ....+..+.+..++.++++...++ .|++||+.+++.+..+... ...
T Consensus 219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg--~v~vWD~~~~~~l~~~~~~~~~~ 296 (342)
T d1yfqa_ 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG--IISCWNLQTRKKIKNFAKFNEDS 296 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS--CEEEEETTTTEEEEECCCCSSSE
T ss_pred EEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC--EEEEEECCCCcEEEEecCCCCCE
Confidence 4444432210 00011100 00 112234455554466777777664 7999999888877776543 333
Q ss_pred EEeeccCcccceEEEEEec
Q psy4818 399 ITHISGRRKYNEVFYGFTS 417 (734)
Q Consensus 399 v~~~~~~~d~~~l~~~~ss 417 (734)
+ ++++++++.+++..++
T Consensus 297 ~--~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 297 V--VKIACSDNILCLATSD 313 (342)
T ss_dssp E--EEEEECSSEEEEEEEC
T ss_pred E--EEEEeCCCEEEEEEcC
Confidence 3 4455677767665544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.54 E-value=0.0024 Score=61.20 Aligned_cols=192 Identities=10% Similarity=0.036 Sum_probs=103.3
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
.....+++||..++...+ ..+.+++..+++.+...... ....+.+|+++.++....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~-------------- 140 (287)
T d1pgua2 83 PKVASANNDGFTAVLTND------DDLLILQSFTGDIIKSVRLN--SPGSAVSLSQNYVAVGLEEG-------------- 140 (287)
T ss_dssp EEEEEECSSSEEEEEETT------SEEEEEETTTCCEEEEEECS--SCEEEEEECSSEEEEEETTT--------------
T ss_pred eeeeeeccCCceEEEeec------ccceeeeccceeeeeecccc--ceeeeeeccCcceeeecccc--------------
Confidence 456788999987765332 24788888888754432222 24567889998888766432
Q ss_pred CcEEEEEECCCCCCCCeeEEec-CCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEF-PNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
..+.++++.... ..... .........++|||||++|+.... ...|.+||+.++.. +. ......
T Consensus 141 -~~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~--~~-----~~~~~h 204 (287)
T d1pgua2 141 -NTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDLQSREV--KT-----SRWAFR 204 (287)
T ss_dssp -SCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEE--EE-----CCSCCC
T ss_pred -ceeeeeeccccc----eeeeeeeccCCceeEEEeccCccccccccc----cccccceeeccccc--cc-----cccccc
Confidence 146666654321 11111 112234567899999999885432 25789999987311 00 000111
Q ss_pred ccceEEE-EEecC----------CeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEE
Q psy4818 303 MDHHHEI-IANNG----------PELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYI 371 (734)
Q Consensus 303 ~~~~~~~-~s~dg----------~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (734)
....... |+|++ +.++ .... +..|+.|++..+. ......... ...+..+.+.+++. +++..
T Consensus 205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~-sgs~---D~~i~iw~~~~~~--~~~~~~~~h-~~~V~~v~~~~~~~-l~s~g 276 (287)
T d1pgua2 205 TSKINAISWKPAEKGANEEEIEEDLVA-TGSL---DTNIFIYSVKRPM--KIIKALNAH-KDGVNNLLWETPST-LVSSG 276 (287)
T ss_dssp SSCEEEEEECCCC------CCSCCEEE-EEET---TSCEEEEESSCTT--CCEEETTSS-TTCEEEEEEEETTE-EEEEE
T ss_pred ccccceeeecccccccccccCCCCeeE-eecC---CCeEEEEECCCCC--eEEEEeCCC-CCCeEEEEECCCCE-EEEEE
Confidence 1111122 55443 3333 2222 3468999987643 122222222 33456666666555 55565
Q ss_pred eCCceeEEEEEC
Q psy4818 372 QNVRSVMDLHDL 383 (734)
Q Consensus 372 ~~~~~~l~~~dl 383 (734)
.++ .+.+|++
T Consensus 277 ~D~--~v~iW~i 286 (287)
T d1pgua2 277 ADA--CIKRWNV 286 (287)
T ss_dssp TTS--CEEEEEE
T ss_pred CCC--eEEEEEE
Confidence 664 6777764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=0.0012 Score=63.30 Aligned_cols=239 Identities=11% Similarity=0.062 Sum_probs=121.0
Q ss_pred EeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEec
Q psy4818 130 FLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCD 209 (734)
Q Consensus 130 l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~ 209 (734)
+.|.+....++...+..+.+++++..+..+. . ..|.+|++.+.+.. .......+++|+..++... +
T Consensus 35 ~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~--D----~~v~~w~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~- 100 (287)
T d1pgua2 35 EWSSSSMHQDHSNLIVSLDNSKAQEYSSISW--D----DTLKVNGITKHEFG------SQPKVASANNDGFTAVLTN-D- 100 (287)
T ss_dssp ETTTTEEECCCCSCEEEEECCSTTCCEEEET--T----TEEEETTEEEEECS------SCEEEEEECSSSEEEEEET-T-
T ss_pred EEECCCCCCCCCCCEEEEEecCCCeEEEEee--c----cccccccccccccc------cceeeeeeccCCceEEEee-c-
Confidence 3343333233344567777887766433221 1 24666665432210 1113456777775544322 1
Q ss_pred CCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCc
Q psy4818 210 INGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGK 289 (734)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 289 (734)
..+..++..+... +..+... . ....++++++.+++.... .+.+.+|++.+..
T Consensus 101 ---------------~~~~~~~~~~~~~--~~~~~~~--~---~~~~~~~~~~~~~v~~~~---~~~v~~~~~~~~~--- 152 (287)
T d1pgua2 101 ---------------DDLLILQSFTGDI--IKSVRLN--S---PGSAVSLSQNYVAVGLEE---GNTIQVFKLSDLE--- 152 (287)
T ss_dssp ---------------SEEEEEETTTCCE--EEEEECS--S---CEEEEEECSSEEEEEETT---TSCEEEEETTEEE---
T ss_pred ---------------ccceeeeccceee--eeecccc--c---eeeeeeccCcceeeeccc---cceeeeeeccccc---
Confidence 1466666655431 1222211 1 135678999988876533 2467888876511
Q ss_pred ccCCCCceeeeccc-cceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe------
Q psy4818 290 ISGKFPLKTVIPGM-DHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV------ 361 (734)
Q Consensus 290 l~~~~~~~~l~~~~-~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~------ 361 (734)
....+.... ...... |+|+|+.|+..+.. +.|..+|+.++.. ........ ...+..+.+.
T Consensus 153 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~--~~~~~~~h-~~~v~~~~~~p~~~~~ 220 (287)
T d1pgua2 153 -----VSFDLKTPLRAKPSYISISPSETYIAAGDVM----GKILLYDLQSREV--KTSRWAFR-TSKINAISWKPAEKGA 220 (287)
T ss_dssp -----EEEECSSCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEE--EECCSCCC-SSCEEEEEECCCC---
T ss_pred -----eeeeeeeccCCceeEEEeccCcccccccccc----ccccceeeccccc--cccccccc-ccccceeeeccccccc
Confidence 011111111 122233 89999877765443 4588899876531 01111111 2223333321
Q ss_pred ----eCCEEEEEEEeCCceeEEEEECCCC-ceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 362 ----ANNKLIVHYIQNVRSVMDLHDLNTG-KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 362 ----~~~~l~~~~~~~~~~~l~~~dl~~g-~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.++.++++...+ ..|++||+.++ +.++.+....+.|.++.+++++ . +++.++. ..+.+||+
T Consensus 221 ~~~~~~~~~l~sgs~D--~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~-l~s~g~D---~~v~iW~i 286 (287)
T d1pgua2 221 NEEEIEEDLVATGSLD--TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGAD---ACIKRWNV 286 (287)
T ss_dssp ---CCSCCEEEEEETT--SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETT---SCEEEEEE
T ss_pred ccccCCCCeeEeecCC--CeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-E-EEEEECC---CeEEEEEE
Confidence 224456666666 47999998653 4445555555667788877765 3 4455443 35666653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.46 E-value=0.011 Score=57.90 Aligned_cols=198 Identities=11% Similarity=0.116 Sum_probs=105.3
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.+++|.+||+ |||+.. ...+|++++.++... ..++... .....++++++||+.++.....
T Consensus 43 EG~~~D~~G~-Ly~~D~---------------~~g~I~ri~p~g~~~--~~~~~~~--~~~p~gla~~~dG~l~va~~~~ 102 (319)
T d2dg1a1 43 EGLNFDRQGQ-LFLLDV---------------FEGNIFKINPETKEI--KRPFVSH--KANPAAIKIHKDGRLFVCYLGD 102 (319)
T ss_dssp EEEEECTTSC-EEEEET---------------TTCEEEEECTTTCCE--EEEEECS--SSSEEEEEECTTSCEEEEECTT
T ss_pred EeCEECCCCC-EEEEEC---------------CCCEEEEEECCCCeE--EEEEeCC--CCCeeEEEECCCCCEEEEecCC
Confidence 3789999997 877642 123788888766432 1222221 1234578999999865533221
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccccc----eEEEEEecCCeEEEEeCCC---CCCceEEEEecCCCCCCCc
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDH----HHEIIANNGPELIVKTTKN---APKGKVVTINLNNPCEKNW 343 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~----~~~~~s~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~ 343 (734)
......++..+..++. ...+...... ....++++|+ ||+..... .....+++++.++.. +
T Consensus 103 ~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~ 169 (319)
T d2dg1a1 103 FKSTGGIFAATENGDN---------LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---V 169 (319)
T ss_dssp SSSCCEEEEECTTSCS---------CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---E
T ss_pred CccceeEEEEcCCCce---------eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---e
Confidence 1122567777776621 1222211111 1113778885 77764322 224569999887654 3
Q ss_pred eEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEECC-CCceeeee------CCC-CceEEeeccCcccceEEEE
Q psy4818 344 KTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDLN-TGKRLHSF------PLD-LGQITHISGRRKYNEVFYG 414 (734)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl~-~g~~~~~l------~~~-~g~v~~~~~~~d~~~l~~~ 414 (734)
+.+.... ....++.+. +++.+|++.... .+|+++++. +|...... ... .+.-.++.++.+++ ++++
T Consensus 170 ~~~~~~~--~~pnGia~s~dg~~lyvad~~~--~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va 244 (319)
T d2dg1a1 170 TPIIQNI--SVANGIALSTDEKVLWVTETTA--NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVA 244 (319)
T ss_dssp EEEEEEE--SSEEEEEECTTSSEEEEEEGGG--TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEE
T ss_pred EEEeecc--ceeeeeeeccccceEEEecccC--CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEE
Confidence 4444332 223455554 445677665433 578888874 23221111 111 12233566666664 6665
Q ss_pred EecCCCCceEEEEeC
Q psy4818 415 FTSFLQPGTIYHCNI 429 (734)
Q Consensus 415 ~ss~~~P~~~~~~d~ 429 (734)
... ...|.++|.
T Consensus 245 ~~~---~g~V~~~~p 256 (319)
T d2dg1a1 245 MYG---QGRVLVFNK 256 (319)
T ss_dssp EET---TTEEEEECT
T ss_pred EcC---CCEEEEECC
Confidence 443 357899987
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.054 Score=50.94 Aligned_cols=235 Identities=7% Similarity=0.048 Sum_probs=132.5
Q ss_pred eEEEEEEcCCCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCc-
Q psy4818 102 NYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD- 180 (734)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~- 180 (734)
+++|..... |.+.+..+.....++.. + ..+.++.+.+.+++|.|+-... ..|+..++.+...
T Consensus 3 fLl~s~~~~------I~~~~l~~~~~~~~~~~--~-----~~~~~id~d~~~~~lYw~D~~~----~~I~~~~l~~~~~~ 65 (266)
T d1ijqa1 3 YLFFTNRHE------VRKMTLDRSEYTSLIPN--L-----RNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGV 65 (266)
T ss_dssp EEEEECBSS------EEEEETTSCCCEEEECS--C-----SSEEEEEEETTTTEEEEEETTT----TEEEEEEC------
T ss_pred EEEEECCCe------EEEEECCCCcceeeeCC--C-----CceEEEEEEeCCCEEEEEECCC----CEEEEEEecCCCCC
Confidence 566655322 55666555554555431 1 1245678888999997754322 2577777654221
Q ss_pred ---ccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEE
Q psy4818 181 ---YPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256 (734)
Q Consensus 181 ---~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 256 (734)
......+ ....+++.-+-++.||++.. ...+|.+.++++... ..++..... .-.+++
T Consensus 66 ~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~---------------~~~~I~v~~~~g~~~-~~~~~~~~~---~P~~l~ 126 (266)
T d1ijqa1 66 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---------------VLGTVSVADTKGVKR-KTLFRENGS---KPRAIV 126 (266)
T ss_dssp --CEEEECSSCSCCCEEEEETTTTEEEEEET---------------TTTEEEEEETTSSSE-EEEEECTTC---CEEEEE
T ss_pred cceEEEEeCCCCCcceEEEeeccceEEEEec---------------CCCEEEeEecCCceE-EEEEcCCCC---CcceEE
Confidence 1111111 12356777777888888642 234788888876542 222222222 235788
Q ss_pred EecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc-ccceEE-EEEecCCeEEEEeCCCCCCceEEEEe
Q psy4818 257 VTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG-MDHHHE-IIANNGPELIVKTTKNAPKGKVVTIN 334 (734)
Q Consensus 257 ~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d 334 (734)
..|...+|+++... ....|+..++++. ....++.. ...... .+++.+++||+.-. ....|..++
T Consensus 127 vd~~~g~ly~~~~~--~~~~I~r~~~dGs---------~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~ 192 (266)
T d1ijqa1 127 VDPVHGFMYWTDWG--TPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSID 192 (266)
T ss_dssp EETTTTEEEEEECS--SSCEEEEEETTSC---------CEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEE
T ss_pred EEcccCeEEEeccC--CCcceeEeccCCC---------ceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEE
Confidence 89999998886532 3368999999872 22333322 111122 27777889998743 245799999
Q ss_pred cCCCCCCCceEeecCCCC-ceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeee
Q psy4818 335 LNNPCEKNWKTLIPEDEN-RTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392 (734)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l 392 (734)
+++.. ...++..... ....++... +++||++-. ....|++++..+|+..+.+
T Consensus 193 ~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td~--~~~~I~~~~~~~g~~~~~~ 245 (266)
T d1ijqa1 193 VNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANRLTGSDVNLL 245 (266)
T ss_dssp TTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEET--TTTEEEEEETTTCCCCEEE
T ss_pred CCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEEC--CCCeEEEEECCCCcceEEE
Confidence 98765 2444443311 122344445 478887643 3368999998777654444
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.36 E-value=0.062 Score=50.43 Aligned_cols=205 Identities=10% Similarity=0.045 Sum_probs=123.0
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccc-cccCeeEEEcCCcEEEEEEEecCCCCCCCCccccc
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN-VKFPSISWTHDHKGFFYNQYCDINGTADGTETTAH 222 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~-~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~ 222 (734)
+.++.+-+..++|.|+-... ..|+..++.++........+ ....+++...-++.||++..
T Consensus 38 ~~~ld~D~~~~~iywsd~~~----~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~--------------- 98 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISE----PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--------------- 98 (263)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET---------------
T ss_pred EEEEEEEeCCCEEEEEECCC----CeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc---------------
Confidence 45677788888887754332 36999998877543222111 12245666555778887652
Q ss_pred CCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc
Q psy4818 223 MGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG 302 (734)
Q Consensus 223 ~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~ 302 (734)
....|.+.++++... ..+.... .....+++..|.+.+|+++... .....|+..++++. . ...+...
T Consensus 99 ~~~~I~~~~~dg~~~--~~l~~~~--l~~p~~l~vdp~~g~ly~t~~~-~~~~~I~r~~~dG~-~--------~~~i~~~ 164 (263)
T d1npea_ 99 QLDRIEVAKMDGTQR--RVLFDTG--LVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT-N--------RRILAQD 164 (263)
T ss_dssp TTTEEEEEETTSCSC--EEEECSS--CSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC-C--------CEEEECT
T ss_pred CCCEEEEEecCCceE--EEEeccc--ccCCcEEEEecccCcEEEeecC-CCCcEEEEecCCCC-C--------ceeeeee
Confidence 134788888876542 2233221 1134578899999999877543 22357999999872 1 2223321
Q ss_pred -ccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 303 -MDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 303 -~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
...... .+++.+++||+.... ..+|..+++++.. .+.++... ... .++... ++++|++-. +...|++
T Consensus 165 ~~~~P~glaiD~~~~~lYw~d~~---~~~I~~~~~~g~~---~~~v~~~~-~~P-~~lav~-~~~lYwtd~--~~~~I~~ 233 (263)
T d1npea_ 165 NLGLPNGLTFDAFSSQLCWVDAG---THRAECLNPAQPG---RRKVLEGL-QYP-FAVTSY-GKNLYYTDW--KTNSVIA 233 (263)
T ss_dssp TCSCEEEEEEETTTTEEEEEETT---TTEEEEEETTEEE---EEEEEECC-CSE-EEEEEE-TTEEEEEET--TTTEEEE
T ss_pred cccccceEEEeecCcEEEEEeCC---CCEEEEEECCCCC---eEEEECCC-CCc-EEEEEE-CCEEEEEEC--CCCEEEE
Confidence 111112 266778889986432 3579999998765 34555543 233 345454 488887654 3357999
Q ss_pred EECCCCceeeee
Q psy4818 381 HDLNTGKRLHSF 392 (734)
Q Consensus 381 ~dl~~g~~~~~l 392 (734)
+|..+|+.++.+
T Consensus 234 ~~~~~g~~~~~~ 245 (263)
T d1npea_ 234 MDLAISKEMDTF 245 (263)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCccceEE
Confidence 999888765444
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.34 E-value=0.016 Score=55.89 Aligned_cols=189 Identities=10% Similarity=0.010 Sum_probs=104.7
Q ss_pred EEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCC--CceEEEEEEECCCCCcccccccccccCee
Q psy4818 116 ILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG--SDWNTLHIKDVDTGKDYPEVLKNVKFPSI 193 (734)
Q Consensus 116 ~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g--~~~~~l~v~dl~~g~~~~~~~~~~~~~~~ 193 (734)
.+++.+..++..+.+.++..-. .........+.|+|+. .|+..... .....++. +..|+.......-....++
T Consensus 79 gl~~~d~~tg~~~~l~~~~~~~--~~~~~nd~~vd~~G~i-w~~~~~~~~~~~~g~l~~--~~~g~~~~~~~~~~~~Ng~ 153 (295)
T d2ghsa1 79 GLFLRDTATGVLTLHAELESDL--PGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYH--VAKGKVTKLFADISIPNSI 153 (295)
T ss_dssp EEEEEETTTCCEEEEECSSTTC--TTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEE--EETTEEEEEEEEESSEEEE
T ss_pred ccEEeecccceeeEEeeeecCC--CcccceeeEECCCCCE-EEEeccccccccceeEee--ecCCcEEEEeeccCCccee
Confidence 3777777778878887754221 2356778899999984 44433211 11233443 3455532221111122589
Q ss_pred EEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCC----CCeeEEecCCCCeeEEEEEEecCCcEEEEEEe
Q psy4818 194 SWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQD----KDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTS 269 (734)
Q Consensus 194 ~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~----~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~ 269 (734)
+||||++.++++... ...||+++++.... +.......+.......++....+|.. ++...
T Consensus 154 ~~s~d~~~l~~~dt~---------------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl-Wva~~ 217 (295)
T d2ghsa1 154 CFSPDGTTGYFVDTK---------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-WNARW 217 (295)
T ss_dssp EECTTSCEEEEEETT---------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-EEEEE
T ss_pred eecCCCceEEEeecc---------------cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE-Eeeee
Confidence 999999998887532 34788888754321 12222233333445567888889873 33322
Q ss_pred cCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEE-EEE-ecCCeEEEEeCCCCC----------CceEEEEecCC
Q psy4818 270 NNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE-IIA-NNGPELIVKTTKNAP----------KGKVVTINLNN 337 (734)
Q Consensus 270 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~----------~~~l~~~d~~~ 337 (734)
. ...|+++|.++ . ....+.-....... .|. +|.+.||++|.+.+. .+.||++++..
T Consensus 218 ~---~g~V~~~dp~G-~--------~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~~~ 285 (295)
T d2ghsa1 218 G---EGAVDRYDTDG-N--------HIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIEV 285 (295)
T ss_dssp T---TTEEEEECTTC-C--------EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSSCC
T ss_pred C---CCceEEecCCC-c--------EeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcCCC
Confidence 2 25789998765 1 11111111111122 254 788999998765422 24688877653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.32 E-value=0.03 Score=54.33 Aligned_cols=250 Identities=13% Similarity=0.078 Sum_probs=122.7
Q ss_pred CeEEEEEEcC---CCCeeEEEEEeCCCCCeEEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy4818 101 NNYFYFHNKG---LQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT 177 (734)
Q Consensus 101 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~ 177 (734)
+.+|++.... ......|++.+..++....+..+......+ .-.++.++|||+.|..+ +.. ..|.++|.++
T Consensus 29 G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g--~P~Gl~~~~dg~~l~va-d~~----~~i~~~~~~g 101 (314)
T d1pjxa_ 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGG--IPAGCQCDRDANQLFVA-DMR----LGLLVVQTDG 101 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEEC--CEEEEEECSSSSEEEEE-ETT----TEEEEEETTS
T ss_pred CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCC--cceeEEEeCCCCEEEEE-ECC----CeEEEEeCCC
Confidence 3566654332 111235888877666666655443211111 13478999999977654 322 2488889887
Q ss_pred CCccc--cccccc---ccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeE
Q psy4818 178 GKDYP--EVLKNV---KFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLG 252 (734)
Q Consensus 178 g~~~~--~~~~~~---~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~ 252 (734)
+.... ....+. ....+++.||| .||++....................+||+++.+.. ...+...-. .-
T Consensus 102 ~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~---~~~~~~~~~---~p 174 (314)
T d1pjxa_ 102 TFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ---MIQVDTAFQ---FP 174 (314)
T ss_dssp CEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC---EEEEEEEES---SE
T ss_pred cEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceeccCCceEEEEeecCc---eeEeeCCcc---ee
Confidence 65321 111111 12467889998 47666432110000000001122347888765432 112222111 22
Q ss_pred EEEEEecCCc----EEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeee---ccccceEE---EEEecCCeEEEEeC
Q psy4818 253 LHSEVTDCGR----YLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI---PGMDHHHE---IIANNGPELIVKTT 322 (734)
Q Consensus 253 ~~~~~SpDG~----~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~---~~~~~~~~---~~s~dg~~l~~~s~ 322 (734)
.+++|+||+. +|++.. .....||.+++.. . ..+. ...+. ........ .+..+|. ||+...
T Consensus 175 NGi~~~~d~d~~~~~lyv~d---~~~~~i~~~d~~~-~-g~~~----~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~ 244 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAE---TPTKKLWSYDIKG-P-AKIE----NKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW 244 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEE---TTTTEEEEEEEEE-T-TEEE----EEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE
T ss_pred eeeEECCCCCcceeEEEEEe---ecccceEEeeccC-c-cccc----eeeEEEEccccccccceeeEEecCCc-EEEEEc
Confidence 4688999875 455432 2336899988764 1 1111 11111 11111111 2566665 665443
Q ss_pred CCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeC-CEEEEEEEeCCceeEEEEEC
Q psy4818 323 KNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVAN-NKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 323 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~dl 383 (734)
. ..+|++++.+++. ....+... ......+.+..+ +.||++...+ .+|+++++
T Consensus 245 ~---~g~I~~~dp~~g~---~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~~--g~i~~~~~ 297 (314)
T d1pjxa_ 245 G---SSHIEVFGPDGGQ---PKMRIRCP-FEKPSNLHFKPQTKTIFVTEHEN--NAVWKFEW 297 (314)
T ss_dssp T---TTEEEEECTTCBS---CSEEEECS-SSCEEEEEECTTSSEEEEEETTT--TEEEEEEC
T ss_pred C---CCEEEEEeCCCCE---EEEEEECC-CCCEEEEEEeCCCCEEEEEECCC--CcEEEEEC
Confidence 2 3579999988765 22222221 122334444433 4677765443 57888876
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.32 E-value=0.069 Score=50.07 Aligned_cols=227 Identities=7% Similarity=0.041 Sum_probs=127.2
Q ss_pred CcEEEEEEeCCCCceEEEEEEECCCCCcccc------cccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcE
Q psy4818 153 GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE------VLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQK 226 (734)
Q Consensus 153 G~~la~~~~~~g~~~~~l~v~dl~~g~~~~~------~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 226 (734)
|.+|.|+.. ..|..+++++...... ........++++.+-+++||++.. ....
T Consensus 1 ~~fLl~s~~------~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~---------------~~~~ 59 (263)
T d1npea_ 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI---------------SEPS 59 (263)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET---------------TTTE
T ss_pred CCEEEEeCC------CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEEC---------------CCCe
Confidence 678888764 5788888876542210 111111245777778888887642 1347
Q ss_pred EEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeecc-ccc
Q psy4818 227 IYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPG-MDH 305 (734)
Q Consensus 227 l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~-~~~ 305 (734)
|++..+++...+ .+.... .....++++..-++.|++... ....|.++++++. . ...+... ...
T Consensus 60 I~~~~l~g~~~~--~v~~~~--~~~p~~iAvD~~~~~lY~~d~---~~~~I~~~~~dg~-~--------~~~l~~~~l~~ 123 (263)
T d1npea_ 60 IGRASLHGGEPT--TIIRQD--LGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDGT-Q--------RRVLFDTGLVN 123 (263)
T ss_dssp EEEEESSSCCCE--EEECTT--CCCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC-S--------CEEEECSSCSS
T ss_pred EEEEEcccCCcE--EEEEec--cccccEEEEeccCCeEEEecc---CCCEEEEEecCCc-e--------EEEEecccccC
Confidence 999998765432 233221 112356777777888887642 2368999999872 1 1223222 122
Q ss_pred eEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEe-eCCEEEEEEEeCCceeEEEEEC
Q psy4818 306 HHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAV-ANNKLIVHYIQNVRSVMDLHDL 383 (734)
Q Consensus 306 ~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~dl 383 (734)
... .+.|....+|+... +....+|+++++++.. .+.++... -....++.+. .+++||++- .+...|...++
T Consensus 124 p~~l~vdp~~g~ly~t~~-~~~~~~I~r~~~dG~~---~~~i~~~~-~~~P~glaiD~~~~~lYw~d--~~~~~I~~~~~ 196 (263)
T d1npea_ 124 PRGIVTDPVRGNLYWTDW-NRDNPKIETSHMDGTN---RRILAQDN-LGLPNGLTFDAFSSQLCWVD--AGTHRAECLNP 196 (263)
T ss_dssp EEEEEEETTTTEEEEEEC-CSSSCEEEEEETTSCC---CEEEECTT-CSCEEEEEEETTTTEEEEEE--TTTTEEEEEET
T ss_pred CcEEEEecccCcEEEeec-CCCCcEEEEecCCCCC---ceeeeeec-ccccceEEEeecCcEEEEEe--CCCCEEEEEEC
Confidence 222 37777777777543 3335579999998765 24444333 2223344443 346788764 34468999999
Q ss_pred CCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 384 NTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 384 ~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
+|...+.+........+++. +++.++++-.. -..++++|.
T Consensus 197 -~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~---~~~I~~~~~ 236 (263)
T d1npea_ 197 -AQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWK---TNSVIAMDL 236 (263)
T ss_dssp -TEEEEEEEEECCCSEEEEEE--ETTEEEEEETT---TTEEEEEET
T ss_pred -CCCCeEEEECCCCCcEEEEE--ECCEEEEEECC---CCEEEEEEC
Confidence 56544433222111223433 34566654322 236888887
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.20 E-value=0.00013 Score=74.68 Aligned_cols=119 Identities=12% Similarity=-0.018 Sum_probs=63.4
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-ccc-ccccCeeEEEcCCcEEEEEEEecCCCC--CCCCc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLK-NVKFPSISWTHDHKGFFYNQYCDINGT--ADGTE 218 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~--~~~~~ 218 (734)
.++....+||||+|. +.+... .+|.++|+++++.... .+. .....++.++|||+++|.....+.... .++..
T Consensus 73 ~~s~t~gtpDGr~lf-V~d~~~---~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 73 HISMTDGRYDGKYLF-INDKAN---TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp EEEEETTEEEEEEEE-EEETTT---TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred CcceecccCCCCEEE-EEcCCC---CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 345566789999874 444433 3799999999985432 222 222357899999998776554321100 01111
Q ss_pred ccc-cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 219 TTA-HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 219 ~~~-~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.+. .....+-.++..+...... + ....++ ..+.++|||++++++...
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~q-I-~v~~~p---~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQ-V-IVDGNL---DNTDADYTGKYATSTCYN 196 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEE-E-EESSCC---CCEEECSSSSEEEEEESC
T ss_pred cccccccceEEeecCccceeeEE-E-ecCCCc---cceEECCCCCEEEEEecC
Confidence 111 1112233344443321100 1 111122 358999999999876543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.90 E-value=0.049 Score=52.35 Aligned_cols=191 Identities=9% Similarity=0.037 Sum_probs=95.5
Q ss_pred CeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 191 PSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 191 ~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
.+++++|||+ ||++.. ...+|++++.++. ...+...+ ....+++++|||+.++ ....
T Consensus 31 e~iAv~pdG~-l~vt~~---------------~~~~I~~i~p~g~---~~~~~~~~---~~~~gla~~~dG~l~v-~~~~ 87 (302)
T d2p4oa1 31 ENLASAPDGT-IFVTNH---------------EVGEIVSITPDGN---QQIHATVE---GKVSGLAFTSNGDLVA-TGWN 87 (302)
T ss_dssp EEEEECTTSC-EEEEET---------------TTTEEEEECTTCC---EEEEEECS---SEEEEEEECTTSCEEE-EEEC
T ss_pred CCEEECCCCC-EEEEeC---------------CCCEEEEEeCCCC---EEEEEcCC---CCcceEEEcCCCCeEE-EecC
Confidence 5789999996 665543 1347988876543 22233322 2456899999999544 3322
Q ss_pred CCCCceEEEEeCCCCCCCcccCCCCceeeeccc--cceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEee
Q psy4818 271 NTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM--DHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 347 (734)
Q Consensus 271 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~--~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 347 (734)
. ..++.+++.+.. .....+.... ...... +.++| .+|+... ...++++++..++. ..+.
T Consensus 88 ~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~---~~~~i~~~~~~~~~----~~~~ 149 (302)
T d2p4oa1 88 A---DSIPVVSLVKSD-------GTVETLLTLPDAIFLNGITPLSDT-QYLTADS---YRGAIWLIDVVQPS----GSIW 149 (302)
T ss_dssp T---TSCEEEEEECTT-------SCEEEEEECTTCSCEEEEEESSSS-EEEEEET---TTTEEEEEETTTTE----EEEE
T ss_pred C---ceEEEEEecccc-------cceeeccccCCccccceeEEccCC-CEEeecc---ccccceeeeccCCc----ceeE
Confidence 1 345555554411 1112222111 111112 55665 4554332 24568888877653 1111
Q ss_pred cC----------CCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeC--CCCceEEeeccCcccceEEEEE
Q psy4818 348 PE----------DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFP--LDLGQITHISGRRKYNEVFYGF 415 (734)
Q Consensus 348 ~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~--~~~g~v~~~~~~~d~~~l~~~~ 415 (734)
.. ........+.. +++.+++.... ..+++++++.......... .......++.++++++ +++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~ngi~~-~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~ 225 (302)
T d2p4oa1 150 LEHPMLARSNSESVFPAANGLKR-FGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGAT 225 (302)
T ss_dssp EECGGGSCSSTTCCSCSEEEEEE-ETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEEC
T ss_pred ecCCccceeeccCcccccccccc-cCCceeeecCC--CCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEE
Confidence 11 10111233433 44777776543 3689999885432211111 0111223456667774 66554
Q ss_pred ecCCCCceEEEEeC
Q psy4818 416 TSFLQPGTIYHCNI 429 (734)
Q Consensus 416 ss~~~P~~~~~~d~ 429 (734)
... .++++++.
T Consensus 226 ~~~---~~V~~i~p 236 (302)
T d2p4oa1 226 HIY---NSVVRIAP 236 (302)
T ss_dssp BTT---CCEEEECT
T ss_pred cCC---CcEEEECC
Confidence 332 46889987
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.73 E-value=0.16 Score=44.33 Aligned_cols=204 Identities=10% Similarity=0.018 Sum_probs=107.8
Q ss_pred CCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEE
Q psy4818 152 NGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHV 231 (734)
Q Consensus 152 DG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (734)
|+..|.|.....|. ..++++ .+|+.+..+.....+ ...=-+.=..|.|.++-.. ....+.||..+
T Consensus 24 ~~d~ll~~~~seG~--vni~~l--~g~~~vkLtkePI~~-~~~Pk~~ldfi~f~RDV~k----------GkE~Hai~~~N 88 (313)
T d2hu7a1 24 DGDKLLVVGFSEGS--VNAYLY--DGGETVKLNREPINS-VLDPHYGVGRVILVRDVSK----------GAEQHALFKVN 88 (313)
T ss_dssp TTTEEEEEEEETTE--EEEEEE--SSSSCEECCSSCCSE-ECEECTTBSEEEEEEECST----------TSCCEEEEEEE
T ss_pred cCCcEEEEEeccce--EEEEEE--eCCEEEEEecccccC-cCCCccCcceEEEEeehhc----------CcceeeEEEEc
Confidence 34445555444443 455554 566665555554421 1111122237888887543 13356788888
Q ss_pred CCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccccceEEEE-
Q psy4818 232 LGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEII- 310 (734)
Q Consensus 232 l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~- 310 (734)
+..+.++..+ +.+ -+..+ .+..-|++.++|+..+. +...+|+++ +| .+++|.. -..+.++
T Consensus 89 lk~~GEE~~i--~sp-k~vRI--~S~~yddk~vvF~Gase-d~~~LYvie--gG---------klrkL~~--vPpFsFVt 149 (313)
T d2hu7a1 89 TSRPGEEQRL--EAV-KPMRI--LSGVDTGEAVVFTGATE-DRVALYALD--GG---------GLRELAR--LPGFGFVS 149 (313)
T ss_dssp TTSTTCEEEC--TTS-CSBEE--EEEEECSSCEEEEEECS-SCEEEEEEE--TT---------EEEEEEE--ESSCEEEE
T ss_pred cCCCCeeeEe--cCC-ceEEE--EEeeecCceEEEecccC-CceEEEEEe--CC---------ceeeecc--CCCcceEE
Confidence 8743332111 111 12223 34556999999988653 224556554 42 2344432 1122222
Q ss_pred EecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceee
Q psy4818 311 ANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH 390 (734)
Q Consensus 311 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~ 390 (734)
.-.|+.|.=++--.+....++..|+.++. ++ ++.+.++. +.......++++..-+..-+.+....+|+.+++. .
T Consensus 150 DI~~d~I~G~g~~~g~~~sfF~adl~SG~---lr-i~tpkeGS-~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~y-e 223 (313)
T d2hu7a1 150 DIRGDLIAGLGFFGGGRVSLFTSNLSSGG---LR-VFDSGEGS-FSSASISPGMKVTAGLETAREARLVTVDPRDGSV-E 223 (313)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTEE---EE-EECCSSEE-EEEEEECTTSCEEEEEEESSCEEEEEECTTTCCE-E
T ss_pred eccCCeEEEEeeecCCcceEEEEecccCC---EE-EecCCCCc-ccceeEccCceeeeccCCCCceEEEEEecccCce-e
Confidence 23466655443333445569999997776 34 44444343 4444445557776555566667666889988875 5
Q ss_pred eeCCC
Q psy4818 391 SFPLD 395 (734)
Q Consensus 391 ~l~~~ 395 (734)
++.+|
T Consensus 224 rve~P 228 (313)
T d2hu7a1 224 DLELP 228 (313)
T ss_dssp ECCCS
T ss_pred eeecC
Confidence 56555
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.69 E-value=0.24 Score=45.93 Aligned_cols=235 Identities=9% Similarity=0.066 Sum_probs=110.4
Q ss_pred EEeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccccc-ccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccc
Q psy4818 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-NVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA 221 (734)
Q Consensus 143 ~~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~-~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~ 221 (734)
+-.++++++||+.. ++ +... ...+..++..+......... .....++++++||+ |+ ++...
T Consensus 15 ~P~~vavd~dG~i~-v~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~-v~d~~------------ 76 (260)
T d1rwia_ 15 SPSGVAVDSAGNVY-VT-SEGM--YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VY-VTDFN------------ 76 (260)
T ss_dssp CEEEEEECTTCCEE-EE-ECSS--SCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EE-EEETT------------
T ss_pred CCCEEEEcCCCCEE-EE-EcCC--CCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EE-Eeeee------------
Confidence 34578999999833 32 2221 13455555444332221111 12235789999986 54 43311
Q ss_pred cCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeec
Q psy4818 222 HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301 (734)
Q Consensus 222 ~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~ 301 (734)
...+.+.+-++. . .+... .......+++++++|+..+ . .. ....++.++..+. .. ......
T Consensus 77 --~~~i~~~~~~~~--~--~~~~~-~~~~~p~~iavd~~g~i~v-~-d~--~~~~~~~~~~~~~-~~-------~~~~~~ 137 (260)
T d1rwia_ 77 --NRVVTLAAGSNN--Q--TVLPF-DGLNYPEGLAVDTQGAVYV-A-DR--GNNRVVKLAAGSK-TQ-------TVLPFT 137 (260)
T ss_dssp --TEEEEECTTCSC--C--EECCC-CSCCSEEEEEECTTCCEEE-E-EG--GGTEEEEECTTCS-SC-------EECCCC
T ss_pred --eceeeeeeeccc--e--eeeee-eeeeecccccccccceeEe-e-cc--ccccccccccccc-ee-------eeeeec
Confidence 123333222211 1 12211 1112345788999998543 2 22 2256777777651 11 111111
Q ss_pred cccceEE-EEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEE
Q psy4818 302 GMDHHHE-IIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380 (734)
Q Consensus 302 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 380 (734)
+...... .++++|+ +|+.... ..+|++++.++.. ...+.........++.+..++.|+++... ..+|+.
T Consensus 138 ~~~~p~~i~~~~~g~-~~v~~~~---~~~i~~~d~~~~~----~~~~~~~~~~~p~gi~~d~~g~l~vsd~~--~~~i~~ 207 (260)
T d1rwia_ 138 GLNDPDGVAVDNSGN-VYVTDTD---NNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHN--TNQVVK 207 (260)
T ss_dssp SCCSCCEEEECTTCC-EEEEEGG---GTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETT--TTEEEE
T ss_pred ccCCcceeeecCCCC-Eeeeccc---cccccccccccce----eeeeeccccCCCccceeeeeeeeeeeecC--CCEEEE
Confidence 1121122 2567765 5554332 3579999987654 33333222223345555555677766533 357888
Q ss_pred EECCCCceeeeeCCC-CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 381 HDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 381 ~dl~~g~~~~~l~~~-~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
++. ++.....+... .....++..++++ .++++-.. . .+|.+++.
T Consensus 208 ~~~-~~~~~~~~~~~~~~~P~~i~~d~~g-~l~vad~~-~--~rI~~i~~ 252 (260)
T d1rwia_ 208 LLA-GSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRG-N--DRVVKLTS 252 (260)
T ss_dssp ECT-TCSCCEECCCCSCCCEEEEEECTTC-CEEEEEGG-G--TEEEEECC
T ss_pred EeC-CCCeEEEEccCCCCCeEEEEEeCCC-CEEEEECC-C--CEEEEEeC
Confidence 887 44433333222 2223456566655 45554221 1 25666654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.44 E-value=0.36 Score=44.91 Aligned_cols=208 Identities=13% Similarity=0.205 Sum_probs=120.5
Q ss_pred eeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccCC
Q psy4818 145 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 224 (734)
Q Consensus 145 ~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~ 224 (734)
.+.-..|..+-||... | ..|.++|+++.+.+....-....--..| -+.+.|+++..
T Consensus 66 dsAIMhP~~~IiALra---g---~~LQiFnletK~klks~~~~e~VvfWkW-is~~~L~lVT~----------------- 121 (327)
T d1utca2 66 DSAIMNPASKVIALKA---G---KTLQIFNIEMKSKMKAHTMTDDVTFWKW-ISLNTVALVTD----------------- 121 (327)
T ss_dssp SEEEECSSSSEEEEEE---T---TEEEEEETTTTEEEEEEECSSCCCEEEE-SSSSEEEEECS-----------------
T ss_pred hhhhcCCCCcEEEEec---C---CeEEEEehhHhhhhceEEcCCCcEEEEe-cCCCEEEEEcC-----------------
Confidence 4577889999999875 3 3699999999886654333223356688 45568888873
Q ss_pred cEEEEEECCCCCCCCeeEEecCCC--CeeEEEEEEecCCcEEEEEEecCCCC---ceEEEEeCCCCCCCcccCCCCceee
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNG--RSLGLHSEVTDCGRYLLVSTSNNTQG---SDLHYFDLHSLPDGKISGKFPLKTV 299 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~---~~i~~~d~~~~~~~~l~~~~~~~~l 299 (734)
..||-|++.+. .+.+.+|+.... ..-+.+...++|+||+++..-..... ..+-++..+. ...+.
T Consensus 122 taVYHW~~~g~-s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er----------~~sQ~ 190 (327)
T d1utca2 122 NAVYHWSMEGE-SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----------KVSQP 190 (327)
T ss_dssp SEEEEEESSSS-CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT----------TEEEE
T ss_pred CceEEEcccCC-CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc----------CcCcc
Confidence 26999999654 346677875321 22456788999999999876432221 4555566554 12334
Q ss_pred eccccceEEEEEecCC----eEEEEeCCCCCCceEEEEecCCCCC--CCc----eEe-ecCC-CCceeEEEEEeeCCEEE
Q psy4818 300 IPGMDHHHEIIANNGP----ELIVKTTKNAPKGKVVTINLNNPCE--KNW----KTL-IPED-ENRTLDVVAAVANNKLI 367 (734)
Q Consensus 300 ~~~~~~~~~~~s~dg~----~l~~~s~~~~~~~~l~~~d~~~~~~--~~~----~~l-~~~~-~~~~~~~~~~~~~~~l~ 367 (734)
+.+....+..+--+|. .++-..+++....+|..+++..+.. ... .++ ++++ .++-.-.+.....-.++
T Consensus 191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii 270 (327)
T d1utca2 191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 270 (327)
T ss_dssp ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE
T ss_pred ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE
Confidence 4444433333322222 3444444545567899999865321 111 122 2222 11112233333323344
Q ss_pred EEEEeCCceeEEEEECCCCcee
Q psy4818 368 VHYIQNVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 368 ~~~~~~~~~~l~~~dl~~g~~~ 389 (734)
+..+.. +-++++|+++|..+
T Consensus 271 yviTK~--G~i~lyDleTgt~i 290 (327)
T d1utca2 271 FLITKY--GYIHLYDLETGTCI 290 (327)
T ss_dssp EEEETT--SEEEEEETTTCCEE
T ss_pred EEEecC--cEEEEEEcccccEE
Confidence 444444 47999999999864
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.41 E-value=0.39 Score=44.94 Aligned_cols=223 Identities=9% Similarity=0.037 Sum_probs=110.7
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCccccc--c---cc--cccCeeEEEcCCcEEEEEEEecCCCCCCC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEV--L---KN--VKFPSISWTHDHKGFFYNQYCDINGTADG 216 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~--~---~~--~~~~~~~wSpDg~~l~y~~~~~~~~~~~~ 216 (734)
-.+++++|||+ .|..+... ..|.++|.++ +.+... . .. ......++.++...+++....
T Consensus 25 P~gvavd~dg~--i~VaD~~n---~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------- 90 (279)
T d1q7fa_ 25 PSGVAVNAQND--IIVADTNN---HRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-------- 90 (279)
T ss_dssp EEEEEECTTCC--EEEEEGGG---TEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--------
T ss_pred ccEEEEcCCCC--EEEEECCC---CEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccC--------
Confidence 46889999998 35555432 4688999764 322110 0 00 011234555555555544421
Q ss_pred CcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCc
Q psy4818 217 TETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPL 296 (734)
Q Consensus 217 ~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 296 (734)
...+|.+.+.... ....+... ......+++..++|+.++.. .....+++++.++. ..
T Consensus 91 ------~~~~i~~~~~~g~---~~~~~~~~-~~~~p~~~avd~~G~i~v~~----~~~~~~~~~~~~g~---------~~ 147 (279)
T d1q7fa_ 91 ------PTHQIQIYNQYGQ---FVRKFGAT-ILQHPRGVTVDNKGRIIVVE----CKVMRVIIFDQNGN---------VL 147 (279)
T ss_dssp ------GGCEEEEECTTSC---EEEEECTT-TCSCEEEEEECTTSCEEEEE----TTTTEEEEECTTSC---------EE
T ss_pred ------Ccccccccccccc---ceeecCCC-cccccceeccccCCcEEEEe----eccceeeEeccCCc---------ee
Confidence 1235665554322 11222211 11234567888899855532 12357777776551 11
Q ss_pred eeee--ccccceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC
Q psy4818 297 KTVI--PGMDHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373 (734)
Q Consensus 297 ~~l~--~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (734)
...- ......... ++++| .+|+.... ...|++++.++.. +..+-.........++.+..++.++++-. .
T Consensus 148 ~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~---~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~i~Vad~-~ 219 (279)
T d1q7fa_ 148 HKFGCSKHLEFPNGVVVNDKQ-EIFISDNR---AHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADN-H 219 (279)
T ss_dssp EEEECTTTCSSEEEEEECSSS-EEEEEEGG---GTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEEC-S
T ss_pred ecccccccccccceeeeccce-eEEeeecc---ccceeeeecCCce---eeeecccccccCCcccccccCCeEEEEEC-C
Confidence 1110 111111122 44544 46665443 4578889876542 22222222122334555555567776543 2
Q ss_pred CceeEEEEECCCCceeeeeCCC--CceEEeeccCcccceEEE
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLD--LGQITHISGRRKYNEVFY 413 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~--~g~v~~~~~~~d~~~l~~ 413 (734)
....|.+++. +|+.++.+..+ .....+++..+++ .+++
T Consensus 220 ~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG-~l~V 259 (279)
T d1q7fa_ 220 NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG-SVVL 259 (279)
T ss_dssp SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT-EEEE
T ss_pred CCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC-cEEE
Confidence 2346888887 79876666433 2234566667776 3544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.33 E-value=0.25 Score=45.85 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=93.8
Q ss_pred EeeEEeCCCCcEEEEEEeCCCCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCCCCCcccccC
Q psy4818 144 LKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHM 223 (734)
Q Consensus 144 ~~~~~~SPDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~ 223 (734)
..++++++||+. |..+..+ ..+++.+..++..+..........++++.++|+ |++....
T Consensus 59 p~gvav~~~g~i--~v~d~~~---~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~--------------- 117 (260)
T d1rwia_ 59 PQGLAVDGAGTV--YVTDFNN---RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG--------------- 117 (260)
T ss_dssp CCCEEECTTCCE--EEEETTT---EEEEECTTCSCCEECCCCSCCSEEEEEECTTCC-EEEEEGG---------------
T ss_pred ceEEEEcCCCCE--EEeeeee---ceeeeeeeccceeeeeeeeeeecccccccccce-eEeeccc---------------
Confidence 356889999973 4455443 356665544444322111111235788999986 5444321
Q ss_pred CcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCCCCCCcccCCCCceeeeccc
Q psy4818 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGM 303 (734)
Q Consensus 224 ~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~ 303 (734)
..++++.+.++... .++... ......+++++++|+ |++... ....|+.++.++.. .........
T Consensus 118 ~~~~~~~~~~~~~~---~~~~~~-~~~~p~~i~~~~~g~-~~v~~~---~~~~i~~~d~~~~~--------~~~~~~~~~ 181 (260)
T d1rwia_ 118 NNRVVKLAAGSKTQ---TVLPFT-GLNDPDGVAVDNSGN-VYVTDT---DNNRVVKLEAESNN--------QVVLPFTDI 181 (260)
T ss_dssp GTEEEEECTTCSSC---EECCCC-SCCSCCEEEECTTCC-EEEEEG---GGTEEEEECTTTCC--------EEECCCSSC
T ss_pred ccccccccccccee---eeeeec-ccCCcceeeecCCCC-Eeeecc---ccccccccccccce--------eeeeecccc
Confidence 22566665544321 121111 111223678899998 443322 23678999887621 011011122
Q ss_pred cceEEE-EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEE
Q psy4818 304 DHHHEI-IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHD 382 (734)
Q Consensus 304 ~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~d 382 (734)
...... ++++|. ||+.... +.+|++++.++.. ..++....-....++.+..++.|+++-.. ..+|.+++
T Consensus 182 ~~p~gi~~d~~g~-l~vsd~~---~~~i~~~~~~~~~----~~~~~~~~~~~P~~i~~d~~g~l~vad~~--~~rI~~i~ 251 (260)
T d1rwia_ 182 TAPWGIAVDEAGT-VYVTEHN---TNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSDRTVYVADRG--NDRVVKLT 251 (260)
T ss_dssp CSEEEEEECTTCC-EEEEETT---TTEEEEECTTCSC----CEECCCCSCCCEEEEEECTTCCEEEEEGG--GTEEEEEC
T ss_pred CCCccceeeeeee-eeeeecC---CCEEEEEeCCCCe----EEEEccCCCCCeEEEEEeCCCCEEEEECC--CCEEEEEe
Confidence 222222 566664 6554332 4579999876543 33333332222334444444566654322 24566665
Q ss_pred C
Q psy4818 383 L 383 (734)
Q Consensus 383 l 383 (734)
.
T Consensus 252 ~ 252 (260)
T d1rwia_ 252 S 252 (260)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.0071 Score=62.48 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=87.8
Q ss_pred CCCCCC-CCceEEEEEEEcCCCcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCcccc----------------HHHH
Q psy4818 449 VPEFEP-TLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFS----------------ISRC 511 (734)
Q Consensus 449 ~~~~~~-~~~~~~~~~~~s~dg~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~----------------~~~~ 511 (734)
+|++.. -.++...-.++..++..+.-|++..++ + ....|+++++-||||++...... ..-.
T Consensus 10 lPg~~~~~~~~~ysGyl~~~~~~~lffw~~~s~~-~-~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~ 87 (452)
T d1ivya_ 10 LPGLAKQPSFRQYSGYLKSSGSKHLHYWFVESQK-D-PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPY 87 (452)
T ss_dssp CTTCSSCCSSCEEEEEEECSTTEEEEEEEECCSS-C-GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTT
T ss_pred CcCcCCCCCccceeeeeecCCCceEEEEEEEcCC-C-CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCc
Confidence 455431 233344444555677777777765443 2 24679999999999986432110 0011
Q ss_pred HHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHH-HHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc--
Q psy4818 512 MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAA-EYMINKKYTKPKYITIMGGSNGGLLVGACLNQ-- 588 (734)
Q Consensus 512 ~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~-- 588 (734)
.|.. =..++.+|.+-|.||...-.. .....-.....|+..++ +++.........++.|+|.||||..+..++..
T Consensus 88 SW~~--~anllfIDqPvGtGfS~~~~~-~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~ 164 (452)
T d1ivya_ 88 SWNL--IANVLYLESPAGVGFSYSDDK-FYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM 164 (452)
T ss_dssp CGGG--SSEEEEECCSTTSTTCEESSC-CCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHT
T ss_pred chhc--ccCEEEEecCCCcccccCCCC-CCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHH
Confidence 3443 356888898766666532100 00000011234554544 34444333445689999999999988887642
Q ss_pred -CCC-ceeEEEEcCCcchh
Q psy4818 589 -RPE-LYGAALILVGALDM 605 (734)
Q Consensus 589 -~p~-~~~a~v~~~~~~d~ 605 (734)
.+. .++++++..|++|.
T Consensus 165 ~~~~i~l~Gi~igng~~d~ 183 (452)
T d1ivya_ 165 QDPSMNLQGLAVGNGLSSY 183 (452)
T ss_dssp TCTTSCEEEEEEESCCSBH
T ss_pred hcCcccccceEcCCCccCc
Confidence 333 47999999998774
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.27 E-value=0.43 Score=46.88 Aligned_cols=111 Identities=10% Similarity=-0.031 Sum_probs=56.9
Q ss_pred CCCcEEEEEEeCCCCceEEEEEEECCCCCcccc-ccccc-ccCeeEEEcCCcEEEEEEEecCCC--CCCCCc-cc-ccCC
Q psy4818 151 DNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE-VLKNV-KFPSISWTHDHKGFFYNQYCDING--TADGTE-TT-AHMG 224 (734)
Q Consensus 151 PDG~~la~~~~~~g~~~~~l~v~dl~~g~~~~~-~~~~~-~~~~~~wSpDg~~l~y~~~~~~~~--~~~~~~-~~-~~~~ 224 (734)
+|||+|...-..+ ..|.++|+++-+..+. ++.+. ...++.-++++++.|.....+... ..+|.. .+ ....
T Consensus 97 yDGrylFVNDkan----~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 97 YDGRFLFMNDKAN----TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp EEEEEEEEEETTT----TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred cceeEEEEEcCCC----ceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 4899876443222 4799999998875332 22222 224556667777766554432110 011111 11 1223
Q ss_pred cEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEec
Q psy4818 225 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSN 270 (734)
Q Consensus 225 ~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 270 (734)
..+..++..+.......... .+ .....+|+||||+++++..
T Consensus 173 ~~~t~ID~~tm~V~~QV~V~--g~---ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 173 NVFTAVDADKWEVAWQVLVS--GN---LDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp EEEEEEETTTTEEEEEEEES--SC---CCCEEECSSSSEEEEEESC
T ss_pred eEEEEEecCCceEEEEeeeC--CC---hhccccCCCCCEEEEEecc
Confidence 34556666554321111111 11 2357999999999987643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.47 Score=43.54 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=96.0
Q ss_pred EEEcCCcEEEEEEEecCCCCCCCCcccccCCcEEEEEECCCCCCCCeeEEecCCCCeeEEEEEEecCCcEEEEEEecCCC
Q psy4818 194 SWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQ 273 (734)
Q Consensus 194 ~wSpDg~~l~y~~~~~~~~~~~~~~~~~~~~~~l~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 273 (734)
++++||+.|+-...|. .|.+|++.+.+ .+..+.. +...+. ++++|+++|+-.. .
T Consensus 20 c~~~d~~~l~sgs~Dg----------------~i~vWd~~~~~--~~~~l~~--H~~~V~--~v~~~~~~l~s~s----~ 73 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDN----------------TIKIWDKNTLE--CKRILTG--HTGSVL--CLQYDERVIITGS----S 73 (293)
T ss_dssp EEECCSSEEEEEESSS----------------CEEEEESSSCC--EEEEECC--CSSCEE--EEECCSSEEEEEE----T
T ss_pred EEEEcCCEEEEEeCCC----------------eEEEEECCCCc--EEEEEec--CCCCEe--eeecccceeeccc----c
Confidence 6889999877666443 68888987754 2233332 232343 4556888876322 2
Q ss_pred CceEEEEeCCCCCCCcccCCCCceeeeccccceEEEEEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCc
Q psy4818 274 GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENR 353 (734)
Q Consensus 274 ~~~i~~~d~~~~~~~~l~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 353 (734)
...|.+|++..+. ..............+......++..... ..+..++..+............. ..
T Consensus 74 D~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (293)
T d1p22a2 74 DSTVRVWDVNTGE---------MLNTLIHHCEAVLHLRFNNGMMVTCSKD----RSIAVWDMASPTDITLRRVLVGH-RA 139 (293)
T ss_dssp TSCEEEEESSSCC---------EEEEECCCCSCEEEEECCTTEEEEEETT----SCEEEEECSSSSCCEEEEEECCC-SS
T ss_pred ccccccccccccc---------ccccccccccccccccccccceeecccc----cceeEeecccccccccccccccc-cc
Confidence 2578899988731 1111111111222244444545444332 23666676554321111222222 23
Q ss_pred eeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
.+....+.. ..+ +....+ ..+.+||+.+++.+..+......+..+.. ++..++... .. ..+..+|+
T Consensus 140 ~v~~~~~~~-~~~-~~~s~d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d---g~i~i~d~ 205 (293)
T d1p22a2 140 AVNVVDFDD-KYI-VSASGD--RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SD---NTIRLWDI 205 (293)
T ss_dssp CEEEEEEET-TEE-EEEETT--SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TT---SCEEEEET
T ss_pred ccccceecc-ccc-ccccCC--CceeeecCCCCcEEEEEcccccccccccC--CCCeEEEec-CC---CEEEEEec
Confidence 333333332 343 334344 47899999888877777655444544443 344444333 22 35888898
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.69 E-value=0.34 Score=47.60 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=86.2
Q ss_pred EEeCCeEEEEEEcCCCCeeEEEEEeCCCCCe-EEEeCCCCcCCCCcEEEeeEEeCCCCcEEEEEE--eC------C----
Q psy4818 97 QRQENNYFYFHNKGLQNHSILYVQRNLTGST-EVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCL--SK------S---- 163 (734)
Q Consensus 97 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~l~d~~~~~~~~~~~~~~~~~SPDG~~la~~~--~~------~---- 163 (734)
..||.|+|-.-+. ...+.|.+...-+- +++.-||.- ...+++.+++++...... .. .
T Consensus 96 tyDGrylFVNDka----n~RVAvIdl~~fkt~kIi~iPn~~------~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l 165 (459)
T d1fwxa2 96 KYDGRFLFMNDKA----NTRVARVRCDVMKCDAILEIPNAK------GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 165 (459)
T ss_dssp EEEEEEEEEEETT----TTEEEEEETTTTEEEEEEECSSCC------SEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred ccceeEEEEEcCC----CceEEEEECcceeeeEEEecCCCC------CCceeecccCCCeEEEEccCccccccCCCCccc
Confidence 3567666643322 25577776544332 233334421 244566776666533222 10 1
Q ss_pred ---CCceEEEEEEECCCCCcccccccccccCeeEEEcCCcEEEEEEEecCCCCC----CCCccc---------------c
Q psy4818 164 ---GSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTA----DGTETT---------------A 221 (734)
Q Consensus 164 ---g~~~~~l~v~dl~~g~~~~~~~~~~~~~~~~wSpDg~~l~y~~~~~~~~~~----~~~~~~---------------~ 221 (734)
......+.++|.++.+......-+.......++||||++++++.+.+.+.. ...+.+ .
T Consensus 166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~ 245 (459)
T d1fwxa2 166 EDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 245 (459)
T ss_dssp TCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence 112346778999988754322222233678999999999998865432210 000000 0
Q ss_pred c---CCcEEEEEECCCCCCCCee-EEecCCCCeeEEEEEEecCCcEEEEEEecCCCCceEEEEeCCC
Q psy4818 222 H---MGQKIYYHVLGTEQDKDIP-VVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 284 (734)
Q Consensus 222 ~---~~~~l~~~~l~t~~~~~~~-v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~i~~~d~~~ 284 (734)
+ .-..+-+.+.........+ ....+..+ .++..||||+|+++... -...+-++|++.
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsP---HGV~vSPDGKyi~VaGK---Ls~tVSViD~~K 306 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIPIANNP---HGCNMAPDKKHLCVAGK---LSPTVTVLDVTR 306 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEEEESSC---CCEEECTTSSEEEEECT---TSSBEEEEEGGG
T ss_pred CCcEEeCCceeecccccCCcceeEEEecCCCC---CceEECCCCCEEEEeCC---cCCcEEEEEehh
Confidence 0 0011233333321111111 12223333 36899999999987532 226788888764
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.58 E-value=0.035 Score=54.95 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=50.3
Q ss_pred CCCcEEEEecCCCCCc--C---CccccH---HHHHHHHhcCeEEEEEecccCCCCCchhhhccccccCCCchhHHHHHHH
Q psy4818 486 RRNPVIIYGYGGYGVS--V---LPTFSI---SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAE 557 (734)
Q Consensus 486 ~~~P~vv~~hGg~~~~--~---~~~~~~---~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~~~ 557 (734)
.++|+| ++||-.|.. . ...|.. .+.+.|.+.|+.|+++.+.. ++..|.++. ++.+-++
T Consensus 6 ~~yPIV-LvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p---~~S~~~RA~----------eL~~~I~ 71 (388)
T d1ku0a_ 6 NDAPIV-LLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP---LSSNWDRAC----------EAYAQLV 71 (388)
T ss_dssp CCCCEE-EECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCS---SBCHHHHHH----------HHHHHHH
T ss_pred CCCCEE-EeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccCC---ccCHHHHHH----------HHHHHHh
Confidence 467764 559965542 1 223432 25567878899999999754 333333321 1222111
Q ss_pred H---------HHHcC--------------CCCCCcEEEEEcChHHHHHHHHHhc
Q psy4818 558 Y---------MINKK--------------YTKPKYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 558 ~---------l~~~~--------------~~d~~ri~i~G~S~GG~~~~~~~~~ 588 (734)
- -.+.+ +-..++|-|+|||+||.-+=.++..
T Consensus 72 ~~~~d~G~~hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 72 GGTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp CEEEECCHHHHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHH
T ss_pred hhhhhhhHhHHhhhcccccCccCcccccccccCCceeEeecccccHHHHHHHHH
Confidence 1 00000 1123589999999999988887754
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.053 Score=54.98 Aligned_cols=132 Identities=16% Similarity=0.131 Sum_probs=75.9
Q ss_pred CcEEeEEEEEeccccCCCCCcEEEEecCCCCCcCCccccH---------------HHHHHHHhcCeEEEEEecccCCCCC
Q psy4818 469 GTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSI---------------SRCMFLRHFNGIYAIPNIRGGGELG 533 (734)
Q Consensus 469 g~~i~~~~~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------------~~~~~l~~~G~~v~~~~~rG~~~~g 533 (734)
+..+.-+++...+ + ....|+||++-||||++...++.. .-..|.. =..++.+|.+=|.||.
T Consensus 27 ~~~lfyw~~~s~~-~-~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~--~anllfiD~PvGtGfS 102 (421)
T d1wpxa1 27 DKHFFFWTFESRN-D-PAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNS--NATVIFLDQPVNVGFS 102 (421)
T ss_dssp CCEEEEEEECCSS-C-TTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGG--SSEEEEECCSTTSTTC
T ss_pred CceEEEEEEEeCC-C-CCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccc--ccCEEEEecCCCCCce
Confidence 4567666654433 2 356799999999999865422111 0012332 3568888977666666
Q ss_pred chhhhccccccCCCchhHHHHHHHHHHHc-CC-C-CCCcEEEEEcChHHHHHHHHHhc---CC---CceeEEEEcCCcch
Q psy4818 534 EDWHNAGRLLKKQNCFDDFQAAAEYMINK-KY-T-KPKYITIMGGSNGGLLVGACLNQ---RP---ELYGAALILVGALD 604 (734)
Q Consensus 534 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~-~-d~~ri~i~G~S~GG~~~~~~~~~---~p---~~~~a~v~~~~~~d 604 (734)
..=... ........+|+..+++...+. .. . ....+.|+|.||||..+..++.+ +. -.++++++..|++|
T Consensus 103 y~~~~~--~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 103 YSGSSG--VSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp BCSSCC--CCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred ecCCcc--ccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 321111 111112234555554433332 21 1 23469999999999988877632 12 24789999999887
Q ss_pred hc
Q psy4818 605 ML 606 (734)
Q Consensus 605 ~~ 606 (734)
..
T Consensus 181 p~ 182 (421)
T d1wpxa1 181 PL 182 (421)
T ss_dssp HH
T ss_pred ch
Confidence 54
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=92.95 E-value=0.071 Score=55.00 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCCCcCCccccH---------------HHHHHHHhcCeEEEEEecccCCCCCchhhhc-ccccc--CCCc
Q psy4818 487 RNPVIIYGYGGYGVSVLPTFSI---------------SRCMFLRHFNGIYAIPNIRGGGELGEDWHNA-GRLLK--KQNC 548 (734)
Q Consensus 487 ~~P~vv~~hGg~~~~~~~~~~~---------------~~~~~l~~~G~~v~~~~~rG~~~~g~~~~~~-~~~~~--~~~~ 548 (734)
..|+||++-||||++...++.. .-..|.. =..++.+|.+-|.||...=... +.... ...+
T Consensus 66 ~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~--~an~lfIDqPvGvGfSy~~~~~~~~~~~~~~~~~ 143 (483)
T d1ac5a_ 66 DRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWIS--KGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDED 143 (483)
T ss_dssp SCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGG--TSEEEEECCSTTSTTCSSCCSSGGGSCTTSSCCS
T ss_pred CCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCcccc--cCCEEEEeCCCCcCeeecCCCCccccccccccCC
Confidence 3599999999999875321100 0012322 3568888987666665221100 00000 1112
Q ss_pred ----hhHHHHHHH-HHHHcCCCCCCcEEEEEcChHHHHHHHHHhcC-----------C-CceeEEEEcCCcchh
Q psy4818 549 ----FDDFQAAAE-YMINKKYTKPKYITIMGGSNGGLLVGACLNQR-----------P-ELYGAALILVGALDM 605 (734)
Q Consensus 549 ----~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-----------p-~~~~a~v~~~~~~d~ 605 (734)
..|+...++ |+.........++.|+|.||||..+-.++..- + =.++++++..|++|.
T Consensus 144 ~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi~IGNg~~d~ 217 (483)
T d1ac5a_ 144 LEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDP 217 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEEEEEEECCCH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccceeeeecCCccCh
Confidence 223333322 33333333456899999999998887776421 1 147999988887665
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.82 E-value=11 Score=34.18 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=58.4
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCceeEEEEECCCCcee
Q psy4818 310 IANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRL 389 (734)
Q Consensus 310 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~dl~~g~~~ 389 (734)
+.++|+ +|+.... ..++..++.++.. ...+-..........+....++.+++..... ..|+++|. +|+.+
T Consensus 121 vd~~G~-i~v~~~~---~~~~~~~~~~g~~---~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~--~~V~~~d~-~G~~~ 190 (279)
T d1q7fa_ 121 VDNKGR-IIVVECK---VMRVIIFDQNGNV---LHKFGCSKHLEFPNGVVVNDKQEIFISDNRA--HCVKVFNY-EGQYL 190 (279)
T ss_dssp ECTTSC-EEEEETT---TTEEEEECTTSCE---EEEEECTTTCSSEEEEEECSSSEEEEEEGGG--TEEEEEET-TCCEE
T ss_pred cccCCc-EEEEeec---cceeeEeccCCce---eecccccccccccceeeeccceeEEeeeccc--cceeeeec-CCcee
Confidence 555554 4444332 3467777765432 1222122222333445455556777665433 57999998 78877
Q ss_pred eeeCCC--CceEEeeccCcccceEEEEEecCCCCceEEEEeC
Q psy4818 390 HSFPLD--LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNI 429 (734)
Q Consensus 390 ~~l~~~--~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~ 429 (734)
..+..+ .....+++.+++++ ++++- +.. -..+.+++.
T Consensus 191 ~~~g~~g~~~~P~giavD~~G~-i~Vad-~~~-~~~v~~f~~ 229 (279)
T d1q7fa_ 191 RQIGGEGITNYPIGVGINSNGE-ILIAD-NHN-NFNLTIFTQ 229 (279)
T ss_dssp EEESCTTTSCSEEEEEECTTCC-EEEEE-CSS-SCEEEEECT
T ss_pred eeecccccccCCcccccccCCe-EEEEE-CCC-CcEEEEECC
Confidence 776432 22345677778775 66542 222 235778876
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=82.40 E-value=20 Score=33.60 Aligned_cols=113 Identities=7% Similarity=-0.029 Sum_probs=60.0
Q ss_pred EecCCeEEEEeCCCCCCc--eEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeC---------------
Q psy4818 311 ANNGPELIVKTTKNAPKG--KVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN--------------- 373 (734)
Q Consensus 311 s~dg~~l~~~s~~~~~~~--~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------- 373 (734)
..||...+++.|....+. .++.++.++.. -.|..-+....-.....+...+++.+|++-...
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~-l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCe-EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcC
Confidence 356766666666533333 44555543322 112222333323445666666668888874211
Q ss_pred CceeEEEEECCCCceeeeeCCCCceEEeeccCcccceEEEEEecCCCCceEEEEeCC
Q psy4818 374 VRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIP 430 (734)
Q Consensus 374 ~~~~l~~~dl~~g~~~~~l~~~~g~v~~~~~~~d~~~l~~~~ss~~~P~~~~~~d~~ 430 (734)
....++.+|. ++. +.+........++..++|++.++++.+.. .++++|++.
T Consensus 186 ~~g~v~~~~~--~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~---~~i~~y~~~ 236 (340)
T d1v04a_ 186 AWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLA---HKIHVYEKH 236 (340)
T ss_dssp CCEEEEEECS--SCE-EEEEEEESSEEEEEECTTSSEEEEEEGGG---TEEEEEEEC
T ss_pred CceeEEEEcC--Cce-EEEcCCCCccceeEECCCCCEEEEEeCCC---CeEEEEEeC
Confidence 1234555654 332 33222222335777889998888876654 478889884
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.25 E-value=17 Score=32.61 Aligned_cols=118 Identities=8% Similarity=-0.007 Sum_probs=57.5
Q ss_pred CCeEEEEeCCC--CCCceEEEEecCCCCCCCceEeecCCCCceeEEEEEeeCCEEEEEEEeCCc---eeEEEEECCCCce
Q psy4818 314 GPELIVKTTKN--APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR---SVMDLHDLNTGKR 388 (734)
Q Consensus 314 g~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~l~~~dl~~g~~ 388 (734)
.+.+++..... .....++.+|..+.. |..................+ +.+++....++. ..++.+|..+.+.
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 223 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNE---WRMITAMNTIRSGAGVCVLH-NCIYAAGGYDGQDQLNSVERYDVETETW 223 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred eecceEecCcccccccceEEEeeccccc---ccccccccccccccccccee-eeEEEecCccccccccceeeeeecceee
Confidence 35566654332 223468888886544 44332222111112232333 667666543332 4678889866654
Q ss_pred eeeeC-CC--CceEEeeccCcccceEEEEE--ecCCCCceEEEEeCCCCcCCCCCCceeEEee
Q psy4818 389 LHSFP-LD--LGQITHISGRRKYNEVFYGF--TSFLQPGTIYHCNIPENITDQDDFKPTIFRE 446 (734)
Q Consensus 389 ~~~l~-~~--~g~v~~~~~~~d~~~l~~~~--ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~ 446 (734)
..+. .+ ........ .+ +++++.. +....-..++.||+ .++ +++.+..
T Consensus 224 -~~~~~~p~~r~~~~~~~--~~-~~l~v~GG~~~~~~~~~v~~yd~-----~~~--~W~~~~~ 275 (288)
T d1zgka1 224 -TFVAPMKHRRSALGITV--HQ-GRIYVLGGYDGHTFLDSVECYDP-----DTD--TWSEVTR 275 (288)
T ss_dssp -EECCCCSSCCBSCEEEE--ET-TEEEEECCBCSSCBCCEEEEEET-----TTT--EEEEEEE
T ss_pred -ecccCccCcccceEEEE--EC-CEEEEEecCCCCeecceEEEEEC-----CCC--EEEECCC
Confidence 3332 22 11111121 23 4565542 22233356899999 566 6777754
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=81.33 E-value=0.71 Score=42.67 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 587 (734)
.+++..+++.++++. ...+|.+.|||+||.+|..++.
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 152 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGM 152 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHH
Confidence 445666666655542 2358999999999999988765
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=80.39 E-value=0.84 Score=42.28 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 588 (734)
.+++...++.++++. ..-+|.+.|||+||.+|..++..
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHH
Confidence 345666666655542 22489999999999999888753
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=80.33 E-value=0.72 Score=42.79 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHhc
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 588 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 588 (734)
..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 445666666655542 23489999999999999987653
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=80.24 E-value=0.83 Score=42.08 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEcChHHHHHHHHHh
Q psy4818 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 587 (734)
Q Consensus 549 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 587 (734)
.+++...++.++++. ...+|.+.|||+||.+|..++.
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~ 144 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAA 144 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHH
Confidence 345666666666542 2248999999999999987764
|